Query 007768
Match_columns 590
No_of_seqs 1169 out of 2438
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0282 mRNA splicing factor [ 100.0 1.5E-86 3.3E-91 657.3 28.2 461 67-590 41-503 (503)
2 KOG0271 Notchless-like WD40 re 100.0 1.3E-44 2.8E-49 349.0 26.2 324 242-589 113-478 (480)
3 KOG0271 Notchless-like WD40 re 100.0 7.7E-44 1.7E-48 343.7 25.5 293 289-590 105-437 (480)
4 KOG0286 G-protein beta subunit 100.0 3.4E-40 7.4E-45 309.0 35.9 292 290-590 46-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-41 9.4E-46 328.9 24.2 284 295-590 171-458 (459)
6 KOG0272 U4/U6 small nuclear ri 100.0 4E-38 8.7E-43 308.1 24.5 282 243-547 174-458 (459)
7 KOG0265 U5 snRNP-specific prot 100.0 2E-37 4.4E-42 291.5 27.3 293 291-588 39-334 (338)
8 KOG0285 Pleiotropic regulator 100.0 1.1E-36 2.3E-41 292.0 26.7 293 283-589 135-436 (460)
9 KOG0293 WD40 repeat-containing 100.0 7.4E-37 1.6E-41 297.9 24.2 295 285-589 210-510 (519)
10 KOG0279 G protein beta subunit 100.0 3.4E-35 7.4E-40 274.0 31.5 289 290-590 6-311 (315)
11 KOG0295 WD40 repeat-containing 100.0 2.2E-36 4.8E-41 291.0 23.3 289 290-590 99-404 (406)
12 KOG0315 G-protein beta subunit 100.0 6.5E-35 1.4E-39 267.8 29.5 270 312-590 10-286 (311)
13 cd00200 WD40 WD40 domain, foun 100.0 7.1E-34 1.5E-38 282.7 38.3 287 292-590 2-289 (289)
14 KOG0318 WD40 repeat stress pro 100.0 3.3E-34 7.2E-39 287.2 35.1 295 287-590 178-558 (603)
15 KOG0273 Beta-transducin family 100.0 1.1E-34 2.3E-39 287.4 30.2 313 258-590 193-521 (524)
16 KOG0315 G-protein beta subunit 100.0 5.2E-34 1.1E-38 261.9 30.4 294 254-570 8-309 (311)
17 KOG0316 Conserved WD40 repeat- 100.0 2.4E-34 5.1E-39 262.1 27.9 288 287-589 5-296 (307)
18 KOG0279 G protein beta subunit 100.0 1.1E-33 2.5E-38 263.8 29.0 280 256-549 28-313 (315)
19 KOG0296 Angio-associated migra 100.0 4E-33 8.6E-38 268.7 33.4 286 292-590 57-396 (399)
20 KOG0284 Polyadenylation factor 100.0 1.1E-34 2.5E-39 282.7 18.7 291 287-590 83-378 (464)
21 KOG0266 WD40 repeat-containing 100.0 4.9E-33 1.1E-37 298.2 33.3 291 292-590 151-452 (456)
22 KOG0291 WD40-repeat-containing 100.0 3.3E-32 7.1E-37 282.8 34.3 271 282-557 333-620 (893)
23 KOG0273 Beta-transducin family 100.0 2.6E-32 5.6E-37 270.6 29.5 293 285-590 165-480 (524)
24 KOG0263 Transcription initiati 100.0 2E-32 4.3E-37 287.4 29.4 278 284-571 363-695 (707)
25 KOG0319 WD40-repeat-containing 100.0 1E-32 2.2E-37 286.5 26.4 328 243-590 104-575 (775)
26 KOG0291 WD40-repeat-containing 100.0 2.3E-31 5E-36 276.5 34.9 299 285-590 131-506 (893)
27 KOG0281 Beta-TrCP (transducin 100.0 1.5E-33 3.3E-38 269.3 14.4 268 298-590 196-475 (499)
28 KOG0263 Transcription initiati 100.0 3.4E-32 7.4E-37 285.6 23.3 247 334-590 369-647 (707)
29 KOG0643 Translation initiation 100.0 1.3E-31 2.8E-36 248.5 24.1 284 294-589 5-314 (327)
30 KOG0286 G-protein beta subunit 100.0 8.8E-31 1.9E-35 245.8 29.9 256 284-547 82-343 (343)
31 PLN00181 protein SPA1-RELATED; 100.0 2.2E-30 4.8E-35 297.3 40.0 286 295-590 479-791 (793)
32 KOG0645 WD40 repeat protein [G 100.0 2.6E-30 5.7E-35 240.4 32.3 286 290-590 5-309 (312)
33 KOG0278 Serine/threonine kinas 100.0 6E-32 1.3E-36 248.3 18.3 283 293-589 8-294 (334)
34 KOG0275 Conserved WD40 repeat- 100.0 4.1E-32 8.8E-37 257.3 16.0 295 287-590 200-507 (508)
35 KOG0313 Microtubule binding pr 100.0 1.4E-30 3.1E-35 252.1 25.8 289 287-589 94-415 (423)
36 KOG0319 WD40-repeat-containing 100.0 1E-30 2.2E-35 271.6 26.3 290 289-589 313-616 (775)
37 KOG0295 WD40 repeat-containing 100.0 1.4E-30 3.1E-35 251.0 22.2 282 245-548 109-405 (406)
38 KOG0292 Vesicle coat complex C 100.0 7.8E-30 1.7E-34 268.6 27.8 284 294-586 4-316 (1202)
39 KOG0276 Vesicle coat complex C 100.0 1.3E-29 2.9E-34 258.4 28.0 286 291-588 5-295 (794)
40 KOG0306 WD40-repeat-containing 100.0 1.2E-29 2.6E-34 263.7 28.1 316 254-590 75-620 (888)
41 KOG0288 WD40 repeat protein Ti 100.0 8.8E-31 1.9E-35 256.0 18.1 294 285-589 161-458 (459)
42 KOG1407 WD40 repeat protein [F 100.0 2.5E-29 5.5E-34 232.6 26.4 277 293-583 14-293 (313)
43 KOG0772 Uncharacterized conser 100.0 3E-29 6.6E-34 250.9 26.6 298 286-589 154-484 (641)
44 KOG0285 Pleiotropic regulator 100.0 8.4E-30 1.8E-34 244.8 20.4 247 332-590 140-387 (460)
45 KOG0318 WD40 repeat stress pro 100.0 4.9E-28 1.1E-32 243.1 33.4 295 289-590 49-348 (603)
46 KOG0640 mRNA cleavage stimulat 100.0 2E-29 4.3E-34 238.1 22.0 294 291-589 104-423 (430)
47 KOG0276 Vesicle coat complex C 100.0 1.3E-29 2.8E-34 258.5 22.3 245 337-590 7-255 (794)
48 KOG0266 WD40 repeat-containing 100.0 3E-28 6.5E-33 261.3 31.1 280 251-549 166-454 (456)
49 KOG0268 Sof1-like rRNA process 100.0 4.8E-30 1E-34 247.0 15.2 288 286-589 53-342 (433)
50 KOG0284 Polyadenylation factor 100.0 2.6E-30 5.7E-35 252.3 13.1 254 284-548 123-379 (464)
51 KOG0283 WD40 repeat-containing 100.0 8E-29 1.7E-33 262.5 25.2 253 290-550 257-577 (712)
52 KOG0316 Conserved WD40 repeat- 100.0 8.5E-29 1.8E-33 225.9 21.3 243 334-590 8-255 (307)
53 KOG0292 Vesicle coat complex C 100.0 5.7E-28 1.2E-32 254.7 30.0 317 246-585 11-389 (1202)
54 KOG1446 Histone H3 (Lys4) meth 100.0 7.9E-27 1.7E-31 222.3 35.0 286 291-589 6-300 (311)
55 KOG0265 U5 snRNP-specific prot 100.0 2.7E-28 5.8E-33 230.1 24.3 283 241-546 44-335 (338)
56 KOG0645 WD40 repeat protein [G 100.0 1.9E-27 4.1E-32 221.4 29.0 282 245-549 15-311 (312)
57 PLN00181 protein SPA1-RELATED; 100.0 3.2E-27 7E-32 271.2 37.6 288 250-548 489-792 (793)
58 cd00200 WD40 WD40 domain, foun 100.0 4.4E-27 9.6E-32 233.7 33.6 281 243-547 8-289 (289)
59 KOG0277 Peroxisomal targeting 100.0 4.8E-28 1E-32 223.4 22.4 281 303-590 12-307 (311)
60 KOG0274 Cdc4 and related F-box 100.0 2.8E-27 6.1E-32 253.7 32.0 277 293-590 201-480 (537)
61 KOG0305 Anaphase promoting com 100.0 1.8E-27 3.9E-32 246.5 28.9 273 303-590 181-459 (484)
62 KOG0647 mRNA export protein (c 100.0 2.9E-27 6.3E-32 223.2 26.5 282 297-583 25-315 (347)
63 KOG0299 U3 snoRNP-associated p 100.0 1.2E-27 2.6E-32 237.2 25.1 308 263-585 112-449 (479)
64 KOG0306 WD40-repeat-containing 100.0 6.4E-27 1.4E-31 243.5 28.9 283 293-590 367-662 (888)
65 KOG0277 Peroxisomal targeting 100.0 1.4E-27 3.1E-32 220.3 19.9 268 266-548 36-308 (311)
66 KOG0281 Beta-TrCP (transducin 100.0 1.6E-28 3.4E-33 235.0 13.9 253 284-554 222-482 (499)
67 KOG0310 Conserved WD40 repeat- 100.0 1.1E-26 2.3E-31 232.2 26.3 277 299-588 26-305 (487)
68 KOG4283 Transcription-coupled 100.0 1.8E-26 3.9E-31 216.8 26.0 292 296-589 40-362 (397)
69 PTZ00421 coronin; Provisional 100.0 1.5E-25 3.2E-30 240.1 35.4 264 300-571 21-313 (493)
70 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-25 3.2E-30 213.7 29.6 249 334-590 5-260 (311)
71 KOG0288 WD40 repeat protein Ti 99.9 7.2E-27 1.6E-31 228.7 18.9 253 283-546 201-458 (459)
72 KOG0641 WD40 repeat protein [G 99.9 2.1E-24 4.5E-29 195.9 33.1 290 291-589 25-346 (350)
73 KOG0289 mRNA splicing factor [ 99.9 1.8E-25 3.8E-30 220.1 28.3 256 285-548 247-505 (506)
74 KOG1273 WD40 repeat protein [G 99.9 2.2E-25 4.8E-30 211.3 25.7 296 287-590 13-320 (405)
75 KOG0973 Histone transcription 99.9 1.6E-25 3.4E-30 243.0 27.1 285 295-589 8-352 (942)
76 KOG2055 WD40 repeat protein [G 99.9 1.4E-24 3E-29 215.4 31.5 283 299-589 213-509 (514)
77 KOG0274 Cdc4 and related F-box 99.9 2.3E-25 4.9E-30 239.1 27.9 261 282-561 231-494 (537)
78 PTZ00420 coronin; Provisional 99.9 1.8E-24 3.9E-29 232.9 33.9 238 287-531 62-318 (568)
79 PTZ00421 coronin; Provisional 99.9 4.6E-24 1E-28 228.6 35.4 230 294-530 70-314 (493)
80 KOG0300 WD40 repeat-containing 99.9 1.3E-25 2.9E-30 212.7 20.7 292 289-590 138-474 (481)
81 KOG0282 mRNA splicing factor [ 99.9 3E-26 6.5E-31 228.6 17.1 283 242-547 212-503 (503)
82 KOG0300 WD40 repeat-containing 99.9 1.9E-25 4E-30 211.7 21.6 288 241-551 145-478 (481)
83 KOG0643 Translation initiation 99.9 2.4E-24 5.2E-29 200.3 26.7 285 242-549 8-317 (327)
84 PTZ00420 coronin; Provisional 99.9 9.8E-24 2.1E-28 227.2 35.5 247 318-572 50-317 (568)
85 KOG0289 mRNA splicing factor [ 99.9 1.4E-24 3.1E-29 213.7 26.2 280 299-589 219-503 (506)
86 KOG1407 WD40 repeat protein [F 99.9 2.6E-24 5.7E-29 199.5 25.7 271 247-540 23-293 (313)
87 KOG0294 WD40 repeat-containing 99.9 3.1E-24 6.6E-29 203.9 26.3 263 315-590 4-279 (362)
88 KOG1036 Mitotic spindle checkp 99.9 3.1E-24 6.6E-29 203.7 26.1 273 299-582 13-294 (323)
89 KOG0296 Angio-associated migra 99.9 2.2E-24 4.7E-29 208.5 25.6 278 246-549 108-398 (399)
90 KOG2096 WD40 repeat protein [G 99.9 3.4E-24 7.3E-29 203.6 26.2 295 286-588 73-398 (420)
91 KOG0310 Conserved WD40 repeat- 99.9 6.4E-25 1.4E-29 219.5 22.2 247 291-548 60-308 (487)
92 KOG1408 WD40 repeat protein [F 99.9 4.7E-25 1E-29 227.9 21.8 294 293-589 363-710 (1080)
93 KOG0308 Conserved WD40 repeat- 99.9 2.4E-25 5.3E-30 228.7 19.1 314 258-590 39-391 (735)
94 KOG0293 WD40 repeat-containing 99.9 4.7E-25 1E-29 215.7 20.1 280 248-550 228-514 (519)
95 KOG0301 Phospholipase A2-activ 99.9 3.6E-24 7.7E-29 221.8 26.8 278 289-589 4-285 (745)
96 KOG0639 Transducin-like enhanc 99.9 5.9E-25 1.3E-29 219.4 20.3 278 297-589 417-701 (705)
97 KOG0268 Sof1-like rRNA process 99.9 3.6E-25 7.8E-30 213.5 17.9 285 242-554 64-350 (433)
98 KOG4328 WD40 protein [Function 99.9 3.1E-24 6.8E-29 212.8 24.2 299 289-589 176-492 (498)
99 KOG0308 Conserved WD40 repeat- 99.9 4.1E-25 8.9E-30 227.1 18.3 285 297-589 19-324 (735)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.2E-23 2E-27 206.8 34.8 269 313-590 2-277 (300)
101 KOG0278 Serine/threonine kinas 99.9 3.8E-25 8.2E-30 203.6 15.3 243 242-504 57-299 (334)
102 KOG1539 WD repeat protein [Gen 99.9 3.5E-23 7.5E-28 218.3 32.0 296 283-589 186-645 (910)
103 KOG0313 Microtubule binding pr 99.9 3.1E-24 6.6E-29 208.4 22.1 239 341-590 103-374 (423)
104 KOG1332 Vesicle coat complex C 99.9 1.4E-24 3.1E-29 199.5 18.5 249 296-548 8-285 (299)
105 KOG1274 WD40 repeat protein [G 99.9 2.7E-23 5.9E-28 221.4 29.8 274 297-586 11-294 (933)
106 KOG0646 WD40 repeat protein [G 99.9 2.1E-24 4.6E-29 214.7 19.8 250 284-572 66-330 (476)
107 KOG0264 Nucleosome remodeling 99.9 4.7E-24 1E-28 211.9 21.7 254 296-590 121-402 (422)
108 KOG0305 Anaphase promoting com 99.9 1E-23 2.2E-28 218.6 25.1 255 285-551 203-463 (484)
109 KOG0321 WD40 repeat-containing 99.9 5.6E-24 1.2E-28 218.3 22.7 278 310-590 62-389 (720)
110 KOG0283 WD40 repeat-containing 99.9 4.2E-24 9E-29 226.8 22.3 254 242-502 265-576 (712)
111 KOG0294 WD40 repeat-containing 99.9 4.9E-23 1.1E-27 195.8 26.8 267 285-569 29-305 (362)
112 KOG0772 Uncharacterized conser 99.9 2.9E-24 6.4E-29 215.3 19.3 253 334-590 158-443 (641)
113 KOG0641 WD40 repeat protein [G 99.9 2.4E-22 5.1E-27 182.6 27.2 254 287-549 77-349 (350)
114 KOG0299 U3 snoRNP-associated p 99.9 2.4E-23 5.2E-28 206.8 22.1 243 286-538 191-444 (479)
115 KOG0973 Histone transcription 99.9 6.3E-23 1.4E-27 222.9 27.2 289 252-550 21-356 (942)
116 KOG0650 WD40 repeat nucleolar 99.9 4.1E-23 8.9E-28 210.4 24.1 292 285-589 386-732 (733)
117 KOG0647 mRNA export protein (c 99.9 1E-22 2.2E-27 192.6 23.8 238 341-590 25-279 (347)
118 KOG0275 Conserved WD40 repeat- 99.9 8.9E-24 1.9E-28 200.8 16.6 289 243-547 212-507 (508)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.5E-21 1.4E-25 193.2 36.1 267 290-571 22-300 (300)
120 KOG1036 Mitotic spindle checkp 99.9 2.9E-22 6.3E-27 190.3 24.1 236 342-590 12-260 (323)
121 KOG1539 WD repeat protein [Gen 99.9 1.2E-21 2.7E-26 206.7 31.3 285 300-590 160-604 (910)
122 KOG0640 mRNA cleavage stimulat 99.9 1E-22 2.3E-27 192.8 20.4 297 245-548 113-425 (430)
123 KOG1063 RNA polymerase II elon 99.9 4E-22 8.8E-27 206.5 26.6 293 288-589 180-645 (764)
124 KOG0269 WD40 repeat-containing 99.9 5.4E-23 1.2E-27 215.3 18.5 279 301-587 41-335 (839)
125 KOG0646 WD40 repeat protein [G 99.9 4.1E-22 8.9E-27 198.4 23.3 256 322-590 18-305 (476)
126 KOG2445 Nuclear pore complex c 99.9 6.5E-21 1.4E-25 180.8 26.7 254 296-589 10-315 (361)
127 KOG0269 WD40 repeat-containing 99.9 8.1E-23 1.8E-27 214.0 14.3 245 301-551 89-342 (839)
128 KOG2055 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 194.7 21.7 287 245-549 214-512 (514)
129 KOG2048 WD40 repeat protein [G 99.9 4.6E-20 9.9E-25 191.2 32.1 277 298-588 24-315 (691)
130 KOG2106 Uncharacterized conser 99.9 1.6E-20 3.4E-25 188.3 27.4 290 291-590 279-624 (626)
131 KOG0301 Phospholipase A2-activ 99.9 3.6E-21 7.9E-26 199.6 22.3 240 333-590 4-247 (745)
132 KOG1274 WD40 repeat protein [G 99.9 1.8E-20 3.9E-25 200.1 26.8 244 340-590 10-260 (933)
133 KOG1332 Vesicle coat complex C 99.9 3.7E-21 8E-26 177.1 18.5 246 339-589 7-283 (299)
134 KOG2106 Uncharacterized conser 99.9 1.4E-19 3.1E-24 181.5 30.1 276 294-590 240-519 (626)
135 KOG0264 Nucleosome remodeling 99.9 6E-21 1.3E-25 189.9 19.3 212 290-503 168-405 (422)
136 KOG1408 WD40 repeat protein [F 99.9 2.2E-20 4.7E-25 193.7 23.5 284 302-590 327-669 (1080)
137 KOG1063 RNA polymerase II elon 99.9 3.7E-20 8.1E-25 192.1 25.1 293 290-589 45-388 (764)
138 KOG0267 Microtubule severing p 99.9 5E-22 1.1E-26 206.6 10.8 237 294-541 23-260 (825)
139 KOG1034 Transcriptional repres 99.9 3.1E-20 6.8E-25 177.6 21.5 291 294-590 33-381 (385)
140 KOG0267 Microtubule severing p 99.9 5.2E-22 1.1E-26 206.5 10.2 254 312-582 4-258 (825)
141 KOG2048 WD40 repeat protein [G 99.9 1.6E-19 3.4E-24 187.3 28.2 242 342-589 24-272 (691)
142 KOG0302 Ribosome Assembly prot 99.9 3.5E-20 7.5E-25 180.1 20.3 249 294-585 146-432 (440)
143 KOG4378 Nuclear protein COP1 [ 99.9 3.6E-20 7.9E-25 185.2 20.1 259 301-571 36-303 (673)
144 KOG0322 G-protein beta subunit 99.8 1.5E-20 3.4E-25 174.7 15.3 298 287-590 2-321 (323)
145 KOG2919 Guanine nucleotide-bin 99.8 3.6E-19 7.8E-24 169.9 23.9 272 302-582 52-360 (406)
146 KOG0270 WD40 repeat-containing 99.8 1.6E-19 3.5E-24 179.0 21.9 240 346-590 176-447 (463)
147 KOG0650 WD40 repeat nucleolar 99.8 1.3E-19 2.9E-24 185.0 21.7 246 334-589 391-677 (733)
148 KOG2096 WD40 repeat protein [G 99.8 4.3E-19 9.2E-24 169.1 22.8 245 337-589 80-357 (420)
149 KOG0639 Transducin-like enhanc 99.8 4.8E-20 1.1E-24 184.5 16.9 236 341-589 417-660 (705)
150 KOG4227 WD40 repeat protein [G 99.8 5E-19 1.1E-23 172.4 22.9 291 293-589 50-384 (609)
151 KOG1538 Uncharacterized conser 99.8 4.2E-19 9.2E-24 182.8 23.1 272 301-590 14-291 (1081)
152 KOG0270 WD40 repeat-containing 99.8 1.8E-19 3.9E-24 178.7 18.8 245 303-554 177-454 (463)
153 KOG1240 Protein kinase contain 99.8 1.5E-18 3.2E-23 190.0 26.3 304 287-590 1036-1431(1431)
154 KOG1334 WD40 repeat protein [G 99.8 6.3E-20 1.4E-24 183.6 14.3 296 290-589 133-463 (559)
155 COG2319 FOG: WD40 repeat [Gene 99.8 1.5E-16 3.3E-21 166.3 40.5 289 289-590 145-440 (466)
156 KOG1188 WD40 repeat protein [G 99.8 3.3E-19 7.1E-24 171.6 18.0 272 313-589 41-343 (376)
157 KOG0302 Ribosome Assembly prot 99.8 3.3E-19 7.1E-24 173.4 17.5 221 339-590 147-376 (440)
158 KOG0307 Vesicle coat complex C 99.8 7.5E-20 1.6E-24 200.0 14.2 280 304-589 11-324 (1049)
159 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-16 2.8E-21 166.8 37.8 287 294-590 60-357 (466)
160 KOG4378 Nuclear protein COP1 [ 99.8 6.3E-19 1.4E-23 176.4 17.8 220 302-531 82-305 (673)
161 KOG1034 Transcriptional repres 99.8 1.8E-19 4E-24 172.4 13.1 245 285-549 121-383 (385)
162 KOG0321 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 179.4 19.9 253 292-551 93-393 (720)
163 KOG1009 Chromatin assembly com 99.8 5.5E-18 1.2E-22 166.5 23.1 282 299-588 13-368 (434)
164 KOG0642 Cell-cycle nuclear pro 99.8 6.2E-19 1.3E-23 179.6 16.0 263 291-590 286-559 (577)
165 KOG0303 Actin-binding protein 99.8 4.7E-18 1E-22 166.2 19.5 208 294-504 76-296 (472)
166 KOG4283 Transcription-coupled 99.8 1.2E-17 2.5E-22 157.8 21.5 209 340-552 40-279 (397)
167 KOG0307 Vesicle coat complex C 99.8 4.2E-19 9E-24 194.2 12.9 248 300-552 65-330 (1049)
168 KOG1007 WD repeat protein TSSC 99.8 2E-17 4.3E-22 155.9 21.4 259 321-588 39-357 (370)
169 KOG0649 WD40 repeat protein [G 99.8 1E-16 2.2E-21 147.8 25.2 272 301-589 12-313 (325)
170 KOG1517 Guanine nucleotide bin 99.8 4.9E-17 1.1E-21 175.6 26.3 261 288-551 1095-1383(1387)
171 KOG1310 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 167.7 20.4 209 292-503 43-304 (758)
172 KOG1517 Guanine nucleotide bin 99.8 3.8E-17 8.3E-22 176.5 23.5 286 297-589 1062-1378(1387)
173 KOG1445 Tumor-specific antigen 99.8 2.8E-17 6.2E-22 168.7 21.2 152 258-418 94-249 (1012)
174 KOG4328 WD40 protein [Function 99.8 2.5E-17 5.4E-22 164.1 20.1 253 291-549 226-495 (498)
175 KOG1273 WD40 repeat protein [G 99.8 3.4E-17 7.3E-22 156.0 19.9 203 380-590 20-224 (405)
176 PRK11028 6-phosphogluconolacto 99.8 1.1E-15 2.3E-20 158.1 32.2 270 315-590 5-302 (330)
177 KOG1009 Chromatin assembly com 99.8 7.4E-17 1.6E-21 158.6 21.3 283 258-554 28-377 (434)
178 KOG2445 Nuclear pore complex c 99.8 2.2E-16 4.7E-21 150.3 22.2 233 260-502 29-318 (361)
179 KOG2919 Guanine nucleotide-bin 99.7 1.1E-16 2.3E-21 153.2 19.9 238 346-590 52-325 (406)
180 KOG1587 Cytoplasmic dynein int 99.7 2.4E-16 5.2E-21 168.4 23.3 246 299-550 242-517 (555)
181 KOG1963 WD40 repeat protein [G 99.7 1.1E-15 2.4E-20 163.5 28.0 287 297-590 203-536 (792)
182 KOG0290 Conserved WD40 repeat- 99.7 1.5E-15 3.2E-20 143.5 25.6 313 259-582 8-356 (364)
183 KOG1587 Cytoplasmic dynein int 99.7 1.5E-15 3.2E-20 162.4 27.6 262 321-590 221-514 (555)
184 PRK01742 tolB translocation pr 99.7 4.8E-16 1E-20 166.2 22.4 234 321-571 183-425 (429)
185 KOG0642 Cell-cycle nuclear pro 99.7 9.2E-17 2E-21 163.9 15.8 250 247-506 297-565 (577)
186 KOG0303 Actin-binding protein 99.7 4.7E-16 1E-20 152.4 19.6 227 321-553 56-298 (472)
187 KOG0644 Uncharacterized conser 99.7 3.6E-18 7.8E-23 180.2 5.1 241 288-590 179-424 (1113)
188 PRK11028 6-phosphogluconolacto 99.7 1.5E-14 3.2E-19 149.6 31.7 251 291-549 27-304 (330)
189 KOG2110 Uncharacterized conser 99.7 3.7E-14 8.1E-19 138.4 30.6 236 299-549 5-248 (391)
190 KOG1007 WD repeat protein TSSC 99.7 1.8E-15 3.9E-20 142.8 20.0 253 293-550 57-362 (370)
191 KOG0771 Prolactin regulatory e 99.7 3.9E-15 8.4E-20 147.7 23.2 196 388-588 148-350 (398)
192 KOG1523 Actin-related protein 99.7 5.5E-15 1.2E-19 141.6 21.8 245 293-583 4-269 (361)
193 KOG1538 Uncharacterized conser 99.7 1.1E-15 2.4E-20 157.9 18.3 242 290-549 44-293 (1081)
194 KOG0771 Prolactin regulatory e 99.7 8.3E-16 1.8E-20 152.4 14.9 198 303-503 148-355 (398)
195 KOG1188 WD40 repeat protein [G 99.7 2.2E-15 4.7E-20 145.5 17.2 256 289-548 60-345 (376)
196 KOG1524 WD40 repeat-containing 99.7 2.4E-15 5.2E-20 152.3 16.0 209 312-546 75-283 (737)
197 KOG0322 G-protein beta subunit 99.6 2.2E-15 4.7E-20 140.7 12.9 276 260-548 18-322 (323)
198 PRK03629 tolB translocation pr 99.6 1.7E-13 3.7E-18 146.4 29.3 235 322-571 179-427 (429)
199 KOG0290 Conserved WD40 repeat- 99.6 2.4E-14 5.3E-19 135.4 19.3 240 297-540 94-357 (364)
200 KOG1963 WD40 repeat protein [G 99.6 6.8E-14 1.5E-18 150.1 24.8 276 304-588 21-318 (792)
201 KOG2321 WD40 repeat protein [G 99.6 8E-14 1.7E-18 142.6 23.9 277 297-588 49-339 (703)
202 KOG4227 WD40 repeat protein [G 99.6 5.2E-14 1.1E-18 137.7 21.1 297 238-548 50-386 (609)
203 PF02239 Cytochrom_D1: Cytochr 99.6 8.8E-13 1.9E-17 137.2 31.7 276 312-590 5-345 (369)
204 KOG2110 Uncharacterized conser 99.6 1.6E-12 3.4E-17 127.2 30.8 251 302-560 49-343 (391)
205 KOG1272 WD40-repeat-containing 99.6 4.5E-15 9.8E-20 148.3 12.1 264 299-580 129-397 (545)
206 KOG1445 Tumor-specific antigen 99.6 9.1E-15 2E-19 150.5 13.4 232 318-553 599-848 (1012)
207 KOG2111 Uncharacterized conser 99.6 2.8E-12 6E-17 123.2 29.3 270 302-586 8-316 (346)
208 KOG1310 WD40 repeat protein [G 99.6 1.8E-14 3.9E-19 146.4 15.2 218 337-555 44-309 (758)
209 PRK04922 tolB translocation pr 99.6 4.1E-13 8.9E-18 143.9 26.2 235 322-571 184-432 (433)
210 KOG2394 WD40 protein DMR-N9 [G 99.6 1.3E-13 2.8E-18 140.2 20.7 217 347-570 127-383 (636)
211 PRK02889 tolB translocation pr 99.6 5.7E-13 1.2E-17 142.4 26.2 235 322-571 176-424 (427)
212 KOG1240 Protein kinase contain 99.6 2.7E-13 5.8E-18 149.4 23.6 254 327-590 1034-1332(1431)
213 KOG3881 Uncharacterized conser 99.6 3.3E-13 7.2E-18 132.7 21.0 263 299-571 55-341 (412)
214 PRK05137 tolB translocation pr 99.6 2.3E-12 5E-17 138.3 29.6 234 322-571 182-432 (435)
215 KOG4497 Uncharacterized conser 99.6 1.3E-13 2.9E-18 132.4 16.9 273 300-589 49-388 (447)
216 KOG2111 Uncharacterized conser 99.5 4.4E-12 9.6E-17 121.9 25.5 178 322-504 75-258 (346)
217 KOG2139 WD40 repeat protein [G 99.5 5.1E-12 1.1E-16 123.2 25.9 280 301-589 100-428 (445)
218 KOG1272 WD40-repeat-containing 99.5 3.7E-14 8E-19 141.8 11.0 228 346-589 132-359 (545)
219 KOG2139 WD40 repeat protein [G 99.5 3.1E-12 6.7E-17 124.6 23.3 242 299-548 140-430 (445)
220 KOG1524 WD40 repeat-containing 99.5 6.2E-13 1.3E-17 135.0 19.1 262 297-588 12-282 (737)
221 PF02239 Cytochrom_D1: Cytochr 99.5 3.7E-11 8.1E-16 125.1 33.1 264 288-558 25-356 (369)
222 PRK01742 tolB translocation pr 99.5 1.2E-12 2.7E-17 140.0 21.9 219 293-530 197-426 (429)
223 KOG0644 Uncharacterized conser 99.5 2.9E-14 6.3E-19 151.1 8.8 232 265-504 199-470 (1113)
224 KOG0649 WD40 repeat protein [G 99.5 4.7E-12 1E-16 117.2 22.0 231 345-589 12-271 (325)
225 KOG4497 Uncharacterized conser 99.5 2.8E-13 6.1E-18 130.2 12.8 222 348-589 13-237 (447)
226 KOG1334 WD40 repeat protein [G 99.5 5.5E-13 1.2E-17 134.3 14.2 256 334-590 133-422 (559)
227 KOG1354 Serine/threonine prote 99.5 1.3E-11 2.7E-16 119.7 22.3 273 299-590 25-357 (433)
228 KOG3881 Uncharacterized conser 99.5 6.7E-12 1.5E-16 123.6 20.4 209 294-507 100-325 (412)
229 KOG1523 Actin-related protein 99.5 3.4E-12 7.4E-17 122.6 17.8 203 343-589 10-233 (361)
230 TIGR02800 propeller_TolB tol-p 99.4 4.5E-11 9.7E-16 127.8 28.1 233 322-569 170-416 (417)
231 PF10282 Lactonase: Lactonase, 99.4 9.6E-10 2.1E-14 114.3 36.4 273 315-590 2-320 (345)
232 PRK00178 tolB translocation pr 99.4 9.1E-11 2E-15 125.9 29.0 234 323-571 180-427 (430)
233 KOG2315 Predicted translation 99.4 7.2E-11 1.6E-15 121.3 26.1 269 299-590 34-388 (566)
234 PRK04792 tolB translocation pr 99.4 1E-10 2.2E-15 125.7 28.8 234 323-571 199-446 (448)
235 KOG2394 WD40 protein DMR-N9 [G 99.4 4.1E-12 8.9E-17 129.4 15.7 196 309-528 183-383 (636)
236 KOG1409 Uncharacterized conser 99.4 2.8E-11 6.1E-16 117.4 20.3 312 260-590 40-392 (404)
237 PF08662 eIF2A: Eukaryotic tra 99.4 2.9E-11 6.3E-16 114.6 18.6 147 433-590 9-177 (194)
238 PRK04922 tolB translocation pr 99.4 9.5E-11 2.1E-15 125.7 24.8 203 293-504 197-413 (433)
239 PF08662 eIF2A: Eukaryotic tra 99.4 7E-11 1.5E-15 111.9 20.9 118 428-557 58-186 (194)
240 PF10282 Lactonase: Lactonase, 99.4 3.8E-09 8.2E-14 109.8 35.4 265 300-569 37-345 (345)
241 PRK05137 tolB translocation pr 99.4 2.1E-10 4.5E-15 123.2 26.8 204 292-504 194-414 (435)
242 PRK03629 tolB translocation pr 99.4 2.3E-10 5E-15 122.4 26.8 221 294-529 193-427 (429)
243 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.2E-09 6.9E-14 108.4 32.6 259 322-590 27-328 (352)
244 KOG2314 Translation initiation 99.3 3.4E-10 7.4E-15 116.0 23.4 267 302-585 213-560 (698)
245 KOG2321 WD40 repeat protein [G 99.3 1.4E-10 3E-15 119.3 20.5 243 341-590 49-300 (703)
246 PRK02889 tolB translocation pr 99.3 5.5E-10 1.2E-14 119.5 24.8 200 293-502 189-403 (427)
247 TIGR03300 assembly_YfgL outer 99.3 3.4E-09 7.4E-14 111.7 29.8 258 312-589 105-376 (377)
248 KOG1064 RAVE (regulator of V-A 99.3 3E-11 6.5E-16 137.5 14.6 252 312-585 2180-2439(2439)
249 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.8E-08 3.9E-13 102.9 33.3 252 290-557 38-338 (352)
250 KOG0280 Uncharacterized conser 99.3 1.5E-09 3.3E-14 103.5 23.3 259 320-589 44-330 (339)
251 KOG4190 Uncharacterized conser 99.3 5.2E-11 1.1E-15 121.4 13.6 173 291-467 727-914 (1034)
252 KOG0974 WD-repeat protein WDR6 99.3 2.6E-10 5.6E-15 124.9 19.3 200 344-550 88-289 (967)
253 PRK01029 tolB translocation pr 99.2 7.5E-09 1.6E-13 110.4 29.6 237 323-571 166-424 (428)
254 TIGR03300 assembly_YfgL outer 99.2 8.3E-09 1.8E-13 108.8 28.6 258 312-590 65-336 (377)
255 KOG2041 WD40 repeat protein [G 99.2 1E-09 2.2E-14 115.2 20.8 277 299-588 14-333 (1189)
256 KOG0974 WD-repeat protein WDR6 99.2 6.7E-10 1.4E-14 121.7 19.6 182 400-590 100-286 (967)
257 PLN02919 haloacid dehalogenase 99.2 3.5E-08 7.6E-13 115.8 34.3 246 303-553 571-892 (1057)
258 KOG2315 Predicted translation 99.2 3.3E-09 7.2E-14 109.3 22.3 252 303-572 129-411 (566)
259 KOG4547 WD40 repeat-containing 99.2 5.5E-09 1.2E-13 108.5 23.8 209 353-569 3-244 (541)
260 TIGR02800 propeller_TolB tol-p 99.2 6.4E-09 1.4E-13 111.1 25.4 201 293-502 183-397 (417)
261 KOG1912 WD40 repeat protein [G 99.2 8.2E-09 1.8E-13 109.7 24.2 212 287-502 43-304 (1062)
262 COG5354 Uncharacterized protei 99.2 3.3E-08 7.2E-13 100.9 27.2 273 300-590 72-393 (561)
263 PRK00178 tolB translocation pr 99.2 1.4E-08 3E-13 109.0 26.5 202 293-503 192-407 (430)
264 KOG4532 WD40-like repeat conta 99.1 1.6E-08 3.5E-13 95.4 22.6 246 321-574 51-315 (344)
265 KOG1409 Uncharacterized conser 99.1 1.7E-09 3.6E-14 105.2 15.8 246 334-590 15-268 (404)
266 KOG4547 WD40 repeat-containing 99.1 1.9E-08 4.2E-13 104.5 24.2 190 309-503 2-221 (541)
267 PRK01029 tolB translocation pr 99.1 1.6E-08 3.5E-13 107.9 24.3 218 365-590 165-401 (428)
268 COG5354 Uncharacterized protei 99.1 3.1E-08 6.6E-13 101.2 24.3 273 297-590 30-346 (561)
269 KOG1064 RAVE (regulator of V-A 99.1 6.9E-10 1.5E-14 126.8 13.2 192 295-507 2204-2403(2439)
270 PF04762 IKI3: IKI3 family; I 99.1 7.1E-08 1.5E-12 111.2 29.3 274 297-589 73-376 (928)
271 KOG1354 Serine/threonine prote 99.1 6.5E-09 1.4E-13 101.1 16.5 200 300-504 85-361 (433)
272 PRK04792 tolB translocation pr 99.1 5E-08 1.1E-12 104.9 25.1 201 294-503 212-426 (448)
273 PF13360 PQQ_2: PQQ-like domai 99.0 2E-07 4.4E-12 91.3 27.2 221 321-556 2-237 (238)
274 KOG0882 Cyclophilin-related pe 99.0 7.2E-09 1.6E-13 104.1 15.8 257 297-557 7-313 (558)
275 KOG0309 Conserved WD40 repeat- 99.0 3.1E-09 6.8E-14 112.2 13.8 285 299-589 24-336 (1081)
276 PLN02919 haloacid dehalogenase 99.0 2.4E-07 5.3E-12 108.8 30.8 239 347-590 571-886 (1057)
277 COG2706 3-carboxymuconate cycl 99.0 1.5E-06 3.3E-11 86.0 31.2 266 321-589 15-318 (346)
278 PRK04043 tolB translocation pr 99.0 3.5E-07 7.6E-12 97.2 29.0 207 345-566 189-416 (419)
279 PF08450 SGL: SMP-30/Gluconola 99.0 5E-07 1.1E-11 89.3 28.3 223 348-580 4-244 (246)
280 COG2706 3-carboxymuconate cycl 99.0 3E-06 6.6E-11 83.9 32.7 269 297-570 37-345 (346)
281 PRK11138 outer membrane biogen 99.0 3.5E-07 7.7E-12 97.0 28.4 260 312-589 120-391 (394)
282 COG5170 CDC55 Serine/threonine 99.0 2.4E-08 5.2E-13 95.9 17.1 271 299-588 26-363 (460)
283 KOG0280 Uncharacterized conser 99.0 7.3E-08 1.6E-12 92.2 20.2 202 298-504 68-286 (339)
284 COG4946 Uncharacterized protei 98.9 1.5E-06 3.2E-11 88.2 27.4 176 307-491 327-507 (668)
285 KOG4190 Uncharacterized conser 98.9 2.8E-09 6.1E-14 109.0 7.3 156 402-559 750-916 (1034)
286 PF04762 IKI3: IKI3 family; I 98.9 2.4E-06 5.3E-11 98.7 31.8 247 298-550 119-457 (928)
287 KOG0309 Conserved WD40 repeat- 98.9 1.6E-08 3.5E-13 107.0 12.3 259 285-550 55-340 (1081)
288 KOG2041 WD40 repeat protein [G 98.9 1.7E-07 3.7E-12 99.0 19.5 244 291-547 63-335 (1189)
289 KOG1912 WD40 repeat protein [G 98.9 2.2E-07 4.8E-12 99.1 20.5 244 298-550 14-305 (1062)
290 KOG1645 RING-finger-containing 98.8 1.5E-07 3.3E-12 93.6 17.5 259 324-589 175-458 (463)
291 KOG4714 Nucleoporin [Nuclear s 98.8 3.9E-08 8.5E-13 92.5 11.8 165 293-460 83-255 (319)
292 PF07433 DUF1513: Protein of u 98.8 6.5E-06 1.4E-10 81.6 28.0 232 346-584 7-278 (305)
293 KOG3914 WD repeat protein WDR4 98.8 9.7E-08 2.1E-12 95.1 15.2 161 346-508 65-229 (390)
294 PF15492 Nbas_N: Neuroblastoma 98.8 4.2E-06 9.1E-11 80.6 25.4 238 305-562 3-272 (282)
295 PF13360 PQQ_2: PQQ-like domai 98.8 5.2E-06 1.1E-10 81.3 25.8 216 364-590 2-228 (238)
296 KOG2066 Vacuolar assembly/sort 98.8 3.3E-07 7.1E-12 98.6 17.7 186 299-502 39-233 (846)
297 KOG1832 HIV-1 Vpr-binding prot 98.8 4.2E-09 9E-14 113.1 3.4 263 288-579 1090-1376(1516)
298 PRK11138 outer membrane biogen 98.8 2.2E-06 4.8E-11 90.9 24.2 258 312-590 69-351 (394)
299 KOG2695 WD40 repeat protein [G 98.7 3.4E-08 7.4E-13 96.3 8.6 165 403-571 228-402 (425)
300 KOG1275 PAB-dependent poly(A) 98.7 2.5E-07 5.5E-12 100.4 14.7 185 354-547 146-340 (1118)
301 KOG1920 IkappaB kinase complex 98.7 6E-06 1.3E-10 92.8 25.4 271 300-589 69-362 (1265)
302 KOG4714 Nucleoporin [Nuclear s 98.7 8.2E-08 1.8E-12 90.4 9.3 158 427-590 87-252 (319)
303 KOG3914 WD repeat protein WDR4 98.6 3.7E-07 8E-12 91.1 13.2 155 431-590 64-221 (390)
304 PRK04043 tolB translocation pr 98.6 2.2E-05 4.7E-10 83.6 27.6 200 365-581 169-386 (419)
305 COG4946 Uncharacterized protei 98.6 3.4E-05 7.4E-10 78.6 27.0 252 313-580 237-506 (668)
306 KOG4532 WD40-like repeat conta 98.6 8.5E-06 1.8E-10 77.4 20.4 234 312-549 84-331 (344)
307 PF08450 SGL: SMP-30/Gluconola 98.6 0.00012 2.7E-09 72.1 30.1 217 304-537 4-243 (246)
308 KOG2314 Translation initiation 98.6 1.1E-05 2.4E-10 83.6 21.6 259 301-571 251-592 (698)
309 PF00400 WD40: WD domain, G-be 98.6 2.3E-07 5E-12 63.0 6.3 38 290-328 2-39 (39)
310 PF07433 DUF1513: Protein of u 98.5 0.00015 3.1E-09 72.1 27.7 231 303-547 8-283 (305)
311 KOG1275 PAB-dependent poly(A) 98.5 2.3E-06 5.1E-11 93.1 15.3 178 400-589 148-339 (1118)
312 PF00400 WD40: WD domain, G-be 98.5 4.3E-07 9.2E-12 61.7 6.4 39 333-371 1-39 (39)
313 KOG2695 WD40 repeat protein [G 98.5 5E-07 1.1E-11 88.4 8.6 150 316-470 228-387 (425)
314 cd00216 PQQ_DH Dehydrogenases 98.5 0.00012 2.5E-09 79.9 28.0 263 312-590 61-422 (488)
315 KOG1832 HIV-1 Vpr-binding prot 98.4 2.2E-07 4.8E-12 100.2 4.7 216 333-571 1091-1311(1516)
316 KOG2114 Vacuolar assembly/sort 98.4 9.2E-05 2E-09 80.8 24.1 222 301-563 27-258 (933)
317 PF06433 Me-amine-dh_H: Methyl 98.4 0.00099 2.2E-08 67.1 28.9 243 304-559 40-330 (342)
318 cd00216 PQQ_DH Dehydrogenases 98.3 0.00053 1.1E-08 74.8 29.1 240 313-561 111-436 (488)
319 KOG2066 Vacuolar assembly/sort 98.3 1.9E-05 4.1E-10 85.4 17.0 185 344-549 40-233 (846)
320 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00065 1.4E-08 64.7 25.1 186 307-500 18-205 (354)
321 COG5170 CDC55 Serine/threonine 98.3 5.3E-06 1.1E-10 80.1 11.1 239 251-501 33-366 (460)
322 PF15492 Nbas_N: Neuroblastoma 98.2 0.00029 6.2E-09 68.2 21.4 187 302-506 46-263 (282)
323 PF08553 VID27: VID27 cytoplas 98.2 0.00087 1.9E-08 75.2 28.1 144 355-501 493-646 (794)
324 KOG1008 Uncharacterized conser 98.2 7.6E-07 1.6E-11 93.5 3.5 198 299-502 56-275 (783)
325 KOG3617 WD40 and TPR repeat-co 98.2 3.1E-05 6.7E-10 83.8 15.2 262 302-578 62-371 (1416)
326 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0013 2.7E-08 62.8 23.7 143 355-502 23-165 (354)
327 PRK02888 nitrous-oxide reducta 98.2 0.0006 1.3E-08 73.9 24.5 205 354-561 140-426 (635)
328 PF06433 Me-amine-dh_H: Methyl 98.2 0.0013 2.8E-08 66.2 25.1 258 322-590 17-318 (342)
329 PF00780 CNH: CNH domain; Int 98.1 0.004 8.7E-08 62.4 28.6 230 312-561 7-267 (275)
330 KOG0882 Cyclophilin-related pe 98.1 1.9E-05 4.1E-10 80.0 10.4 212 342-557 8-239 (558)
331 PF14583 Pectate_lyase22: Olig 98.1 0.0082 1.8E-07 61.7 29.4 273 306-589 42-378 (386)
332 COG3391 Uncharacterized conser 98.1 0.0073 1.6E-07 63.6 30.5 262 301-571 32-308 (381)
333 PF03178 CPSF_A: CPSF A subuni 98.0 0.0011 2.3E-08 68.3 22.7 215 365-588 2-261 (321)
334 KOG1645 RING-finger-containing 98.0 0.00025 5.4E-09 71.2 16.8 81 294-376 188-269 (463)
335 KOG2114 Vacuolar assembly/sort 98.0 0.00024 5.3E-09 77.6 18.0 187 400-590 36-241 (933)
336 PRK02888 nitrous-oxide reducta 98.0 0.00059 1.3E-08 73.9 20.7 170 320-503 213-405 (635)
337 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.01 2.2E-07 65.2 30.4 273 312-590 69-488 (527)
338 COG0823 TolB Periplasmic compo 98.0 0.00099 2.1E-08 70.7 21.7 228 333-571 182-423 (425)
339 KOG1008 Uncharacterized conser 98.0 6.6E-06 1.4E-10 86.7 4.6 203 344-549 57-275 (783)
340 PF14727 PHTB1_N: PTHB1 N-term 98.0 0.029 6.2E-07 59.1 31.2 274 309-588 34-356 (418)
341 PF08596 Lgl_C: Lethal giant l 97.9 0.0028 6.2E-08 66.6 23.6 234 301-538 3-325 (395)
342 COG3391 Uncharacterized conser 97.9 0.026 5.6E-07 59.5 30.6 237 345-588 32-279 (381)
343 PF04053 Coatomer_WDAD: Coatom 97.9 0.0045 9.9E-08 66.0 24.7 222 297-549 30-262 (443)
344 PF11768 DUF3312: Protein of u 97.9 0.0033 7.1E-08 66.7 22.7 89 454-549 239-329 (545)
345 COG3386 Gluconolactonase [Carb 97.8 0.012 2.6E-07 59.7 25.1 224 350-582 31-276 (307)
346 PF11768 DUF3312: Protein of u 97.8 0.0017 3.7E-08 68.8 18.6 114 344-462 206-332 (545)
347 KOG1920 IkappaB kinase complex 97.7 0.0051 1.1E-07 70.1 22.6 232 343-589 68-319 (1265)
348 PF04841 Vps16_N: Vps16, N-ter 97.7 0.053 1.1E-06 57.7 29.3 168 323-503 62-247 (410)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.055 1.2E-06 59.5 29.5 241 312-561 120-502 (527)
350 PF08596 Lgl_C: Lethal giant l 97.7 0.0049 1.1E-07 64.8 20.2 231 345-589 3-287 (395)
351 PF04841 Vps16_N: Vps16, N-ter 97.7 0.026 5.7E-07 60.0 25.8 191 366-571 62-269 (410)
352 PF03178 CPSF_A: CPSF A subuni 97.6 0.013 2.9E-07 60.1 23.0 171 323-502 3-202 (321)
353 KOG4499 Ca2+-binding protein R 97.6 0.015 3.2E-07 55.0 20.5 215 356-578 28-270 (310)
354 KOG3621 WD40 repeat-containing 97.6 0.00038 8.2E-09 74.7 11.3 141 430-570 34-179 (726)
355 PF02897 Peptidase_S9_N: Proly 97.6 0.044 9.5E-07 58.5 27.6 242 301-554 125-409 (414)
356 KOG3617 WD40 and TPR repeat-co 97.6 0.00025 5.5E-09 77.0 9.7 194 347-558 19-228 (1416)
357 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.027 5.8E-07 58.8 23.7 244 321-582 22-301 (353)
358 PF08553 VID27: VID27 cytoplas 97.5 0.0051 1.1E-07 69.2 18.4 142 400-548 494-646 (794)
359 KOG1897 Damage-specific DNA bi 97.5 0.054 1.2E-06 60.9 25.7 281 299-590 530-854 (1096)
360 PF05096 Glu_cyclase_2: Glutam 97.5 0.09 2E-06 51.4 24.7 198 376-580 34-249 (264)
361 COG3490 Uncharacterized protei 97.5 0.07 1.5E-06 52.0 23.4 209 347-558 71-319 (366)
362 KOG2444 WD40 repeat protein [G 97.5 0.0002 4.4E-09 67.1 6.0 141 443-590 32-175 (238)
363 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.12 2.6E-06 53.9 27.5 262 299-582 42-348 (353)
364 smart00320 WD40 WD40 repeats. 97.4 0.00036 7.9E-09 45.4 5.4 38 290-328 3-40 (40)
365 PF06977 SdiA-regulated: SdiA- 97.4 0.15 3.3E-06 50.0 25.9 200 293-499 15-247 (248)
366 smart00320 WD40 WD40 repeats. 97.4 0.00063 1.4E-08 44.2 6.2 39 551-590 2-40 (40)
367 KOG2395 Protein involved in va 97.4 0.0074 1.6E-07 63.1 16.3 145 354-501 344-499 (644)
368 PF04053 Coatomer_WDAD: Coatom 97.4 0.014 3.1E-07 62.2 19.0 140 428-589 31-170 (443)
369 PF14870 PSII_BNR: Photosynthe 97.3 0.23 4.9E-06 50.2 27.5 273 298-589 15-301 (302)
370 COG3386 Gluconolactonase [Carb 97.3 0.1 2.2E-06 53.0 23.8 217 306-538 31-274 (307)
371 PF06977 SdiA-regulated: SdiA- 97.3 0.091 2E-06 51.5 22.4 196 387-588 24-246 (248)
372 KOG2395 Protein involved in va 97.3 0.0093 2E-07 62.4 16.0 141 400-548 347-499 (644)
373 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.023 5E-07 47.7 14.9 104 302-412 2-109 (111)
374 KOG3621 WD40 repeat-containing 97.2 0.0062 1.3E-07 65.7 14.3 116 342-460 32-155 (726)
375 KOG2444 WD40 repeat protein [G 97.2 0.00089 1.9E-08 62.9 6.6 144 314-460 32-178 (238)
376 KOG2079 Vacuolar assembly/sort 97.2 0.0026 5.6E-08 71.5 11.2 110 299-412 89-200 (1206)
377 PF02897 Peptidase_S9_N: Proly 97.2 0.35 7.5E-06 51.6 27.6 230 346-580 126-389 (414)
378 KOG4640 Anaphase-promoting com 97.2 0.002 4.2E-08 68.6 9.7 80 299-381 20-100 (665)
379 COG0823 TolB Periplasmic compo 97.1 0.025 5.5E-07 60.1 17.7 140 409-557 218-366 (425)
380 PF00780 CNH: CNH domain; Int 97.0 0.41 8.8E-06 47.8 24.5 217 354-590 6-253 (275)
381 KOG1897 Damage-specific DNA bi 97.0 0.53 1.1E-05 53.3 26.3 275 302-587 586-893 (1096)
382 PF05096 Glu_cyclase_2: Glutam 96.9 0.42 9E-06 46.9 22.7 197 335-537 35-249 (264)
383 PHA02713 hypothetical protein; 96.9 0.12 2.7E-06 57.3 21.8 199 354-561 303-545 (557)
384 PHA02713 hypothetical protein; 96.9 0.1 2.2E-06 57.9 20.4 181 400-590 305-531 (557)
385 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.087 1.9E-06 44.3 14.8 100 346-454 2-109 (111)
386 PF05694 SBP56: 56kDa selenium 96.8 0.86 1.9E-05 47.7 25.0 201 354-557 86-353 (461)
387 TIGR03074 PQQ_membr_DH membran 96.7 0.51 1.1E-05 54.0 24.7 237 312-558 194-486 (764)
388 PRK13616 lipoprotein LpqB; Pro 96.7 0.18 3.8E-06 56.1 20.4 189 341-545 347-564 (591)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 1.1 2.4E-05 47.3 24.4 41 522-562 310-350 (415)
390 PRK13616 lipoprotein LpqB; Pro 96.5 0.11 2.4E-06 57.7 17.7 175 408-589 328-522 (591)
391 KOG4640 Anaphase-promoting com 96.5 0.012 2.6E-07 62.8 9.4 94 385-482 21-115 (665)
392 KOG4441 Proteins containing BT 96.4 0.34 7.4E-06 53.8 20.5 228 312-551 285-548 (571)
393 KOG4441 Proteins containing BT 96.3 0.16 3.5E-06 56.3 17.4 216 354-585 284-534 (571)
394 PF05694 SBP56: 56kDa selenium 96.3 0.66 1.4E-05 48.5 20.0 153 308-462 138-345 (461)
395 KOG1916 Nuclear protein, conta 96.3 0.00072 1.6E-08 74.2 -1.4 199 320-554 109-328 (1283)
396 PRK10115 protease 2; Provision 96.2 3.1 6.8E-05 47.4 32.6 243 300-552 127-397 (686)
397 KOG2079 Vacuolar assembly/sort 96.2 0.016 3.5E-07 65.4 8.3 104 440-547 98-201 (1206)
398 COG3204 Uncharacterized protei 96.1 1 2.2E-05 44.5 19.3 163 339-504 81-265 (316)
399 PHA03098 kelch-like protein; P 96.0 0.32 6.9E-06 53.8 17.8 182 312-503 295-512 (534)
400 TIGR03118 PEPCTERM_chp_1 conse 95.9 2.1 4.5E-05 42.7 21.7 227 302-529 25-307 (336)
401 COG3204 Uncharacterized protei 95.9 0.42 9.2E-06 47.1 15.7 161 427-587 83-258 (316)
402 PF10647 Gmad1: Lipoprotein Lp 95.9 0.73 1.6E-05 45.6 17.9 145 431-582 25-185 (253)
403 PF14583 Pectate_lyase22: Olig 95.7 3.1 6.8E-05 43.1 22.3 222 350-583 42-303 (386)
404 PF14727 PHTB1_N: PTHB1 N-term 95.5 4 8.6E-05 43.3 27.9 145 355-501 37-203 (418)
405 PRK13684 Ycf48-like protein; P 95.5 3.5 7.6E-05 42.6 29.4 272 299-590 45-329 (334)
406 TIGR03074 PQQ_membr_DH membran 95.5 3.1 6.6E-05 47.8 23.4 113 355-468 194-353 (764)
407 PRK10115 protease 2; Provision 95.4 6.7 0.00015 44.8 27.9 112 344-458 127-254 (686)
408 COG5276 Uncharacterized conser 95.3 3.4 7.3E-05 40.9 22.8 152 342-504 85-243 (370)
409 KOG3630 Nuclear pore complex, 95.2 0.19 4.2E-06 57.4 12.0 144 345-491 102-262 (1405)
410 PHA03098 kelch-like protein; P 95.1 1.1 2.4E-05 49.5 18.2 190 354-552 294-514 (534)
411 COG1520 FOG: WD40-like repeat 95.0 5.6 0.00012 41.6 23.4 197 354-560 68-279 (370)
412 KOG3630 Nuclear pore complex, 94.9 0.28 6.1E-06 56.1 12.4 129 406-537 121-261 (1405)
413 PF12894 Apc4_WD40: Anaphase-p 94.8 0.073 1.6E-06 37.5 4.9 34 519-553 11-44 (47)
414 COG3490 Uncharacterized protei 94.8 1.8 3.8E-05 42.6 15.8 196 293-501 113-347 (366)
415 PHA02790 Kelch-like protein; P 94.8 1.9 4.1E-05 47.0 18.4 171 312-493 272-456 (480)
416 PF10168 Nup88: Nuclear pore c 94.7 10 0.00022 43.2 24.5 94 344-462 85-182 (717)
417 PF12894 Apc4_WD40: Anaphase-p 94.5 0.11 2.4E-06 36.6 5.3 34 343-377 11-44 (47)
418 KOG2280 Vacuolar assembly/sort 94.3 2.6 5.7E-05 46.7 17.4 196 299-507 43-251 (829)
419 COG5167 VID27 Protein involved 94.3 0.49 1.1E-05 49.8 11.4 145 354-502 478-632 (776)
420 KOG1916 Nuclear protein, conta 94.0 0.18 3.8E-06 56.3 8.0 131 426-562 129-283 (1283)
421 TIGR02604 Piru_Ver_Nterm putat 93.9 2.4 5.2E-05 44.4 16.3 146 430-581 14-202 (367)
422 TIGR03548 mutarot_permut cycli 93.9 7.6 0.00016 39.7 19.8 104 400-504 74-196 (323)
423 PF12234 Rav1p_C: RAVE protein 93.8 1.7 3.7E-05 48.2 15.2 100 400-501 42-155 (631)
424 PF08728 CRT10: CRT10; InterP 93.7 1.2 2.5E-05 50.0 13.8 117 473-590 101-244 (717)
425 PF14870 PSII_BNR: Photosynthe 93.6 9.4 0.0002 38.7 25.0 230 342-587 15-256 (302)
426 PF15390 DUF4613: Domain of un 93.3 1.9 4.2E-05 46.5 14.0 151 430-590 20-184 (671)
427 PF14761 HPS3_N: Hermansky-Pud 93.3 7.6 0.00016 36.9 17.2 101 402-504 31-165 (215)
428 PF15390 DUF4613: Domain of un 93.3 4.4 9.5E-05 43.9 16.5 154 343-503 19-187 (671)
429 PHA02790 Kelch-like protein; P 93.2 6.1 0.00013 43.1 18.5 144 354-503 271-424 (480)
430 PF14781 BBS2_N: Ciliary BBSom 93.2 4.3 9.4E-05 35.4 13.5 119 304-425 3-133 (136)
431 COG3823 Glutamine cyclotransfe 93.1 5.5 0.00012 37.5 14.9 176 400-581 57-248 (262)
432 PF08728 CRT10: CRT10; InterP 92.9 4.7 0.0001 45.3 16.9 103 398-501 113-245 (717)
433 PF03022 MRJP: Major royal jel 92.8 12 0.00025 37.8 18.6 170 366-537 35-253 (287)
434 COG5167 VID27 Protein involved 92.8 2 4.4E-05 45.4 12.9 142 399-549 480-632 (776)
435 COG5276 Uncharacterized conser 92.6 12 0.00025 37.2 27.8 273 299-590 86-367 (370)
436 PF10168 Nup88: Nuclear pore c 92.6 11 0.00023 43.1 19.6 29 299-329 84-112 (717)
437 PF12234 Rav1p_C: RAVE protein 92.5 3.3 7.1E-05 46.0 15.0 116 430-548 30-155 (631)
438 PLN02193 nitrile-specifier pro 92.1 20 0.00044 38.9 23.2 192 354-553 175-414 (470)
439 COG3292 Predicted periplasmic 91.9 21 0.00046 38.7 21.0 199 344-551 290-493 (671)
440 PF07995 GSDH: Glucose / Sorbo 91.8 17 0.00038 37.4 23.2 71 473-544 253-330 (331)
441 PF10313 DUF2415: Uncharacteri 91.8 0.75 1.6E-05 31.5 5.7 31 300-330 1-33 (43)
442 COG1520 FOG: WD40-like repeat 91.6 19 0.00042 37.5 29.2 192 313-510 69-276 (370)
443 PF07995 GSDH: Glucose / Sorbo 91.5 18 0.0004 37.2 25.6 236 345-587 3-330 (331)
444 PF14655 RAB3GAP2_N: Rab3 GTPa 91.3 2.1 4.6E-05 45.2 11.5 90 337-426 301-407 (415)
445 PLN02153 epithiospecifier prot 91.2 20 0.00044 36.9 22.4 146 354-504 85-286 (341)
446 TIGR03548 mutarot_permut cycli 90.9 20 0.00044 36.6 20.9 106 354-463 72-198 (323)
447 KOG2063 Vacuolar assembly/sort 90.9 23 0.0005 41.0 19.8 235 312-558 26-277 (877)
448 PF13449 Phytase-like: Esteras 90.9 15 0.00031 37.8 17.2 149 428-578 18-230 (326)
449 PLN02153 epithiospecifier prot 90.8 22 0.00047 36.7 22.2 63 400-462 87-170 (341)
450 KOG2280 Vacuolar assembly/sort 90.8 7 0.00015 43.5 14.8 177 300-484 84-271 (829)
451 PF02333 Phytase: Phytase; In 90.8 23 0.00051 36.9 20.9 196 389-590 58-288 (381)
452 KOG1898 Splicing factor 3b, su 90.7 39 0.00084 39.4 23.3 108 313-420 550-676 (1205)
453 TIGR03547 muta_rot_YjhT mutatr 90.6 23 0.00049 36.6 21.0 51 400-450 65-128 (346)
454 COG3823 Glutamine cyclotransfe 90.4 16 0.00035 34.5 15.1 171 312-489 56-245 (262)
455 TIGR02604 Piru_Ver_Nterm putat 90.2 26 0.00057 36.6 25.6 144 300-450 14-204 (367)
456 KOG4460 Nuclear pore complex, 90.2 7 0.00015 41.7 13.7 96 345-464 105-203 (741)
457 KOG3616 Selective LIM binding 90.0 2.6 5.7E-05 46.4 10.8 66 301-371 16-81 (1636)
458 KOG4659 Uncharacterized conser 89.9 27 0.00058 41.5 18.9 81 296-380 344-434 (1899)
459 KOG2377 Uncharacterized conser 89.4 11 0.00023 39.7 14.1 142 432-578 25-169 (657)
460 PF10647 Gmad1: Lipoprotein Lp 89.1 24 0.00053 34.7 21.5 151 386-542 25-188 (253)
461 PF07250 Glyoxal_oxid_N: Glyox 88.9 9.5 0.00021 37.3 13.0 147 411-559 48-207 (243)
462 PF10433 MMS1_N: Mono-function 88.4 43 0.00093 36.7 28.4 251 310-571 220-503 (504)
463 KOG4499 Ca2+-binding protein R 88.4 25 0.00054 33.9 17.8 143 343-489 108-271 (310)
464 PLN00033 photosystem II stabil 88.3 38 0.00081 35.9 32.1 151 432-589 241-396 (398)
465 PF05935 Arylsulfotrans: Aryls 88.3 43 0.00092 36.5 21.5 151 407-561 126-313 (477)
466 KOG2247 WD40 repeat-containing 88.1 0.093 2E-06 54.8 -1.5 149 428-586 33-182 (615)
467 PF10214 Rrn6: RNA polymerase 87.6 25 0.00054 40.8 17.7 158 299-458 145-328 (765)
468 PF07569 Hira: TUP1-like enhan 87.5 3.1 6.6E-05 40.1 8.7 71 479-550 17-96 (219)
469 PF10313 DUF2415: Uncharacteri 87.3 2.3 4.9E-05 29.2 5.3 32 430-461 1-35 (43)
470 PRK14131 N-acetylneuraminic ac 87.1 42 0.00092 35.1 19.7 51 400-450 86-149 (376)
471 PRK13684 Ycf48-like protein; P 86.9 40 0.00087 34.7 24.2 141 401-547 185-329 (334)
472 TIGR03606 non_repeat_PQQ dehyd 86.8 20 0.00044 38.4 15.1 114 427-540 27-166 (454)
473 KOG1900 Nuclear pore complex, 86.6 8.9 0.00019 45.4 12.8 176 286-503 66-273 (1311)
474 PLN02193 nitrile-specifier pro 86.4 53 0.0012 35.6 24.2 147 354-504 228-412 (470)
475 KOG2377 Uncharacterized conser 86.3 12 0.00025 39.4 12.2 150 307-460 29-186 (657)
476 COG4590 ABC-type uncharacteriz 86.0 4.3 9.4E-05 42.4 9.0 168 333-505 210-389 (733)
477 PF07569 Hira: TUP1-like enhan 85.5 5.1 0.00011 38.6 9.1 65 437-502 18-95 (219)
478 KOG1898 Splicing factor 3b, su 85.3 53 0.0011 38.4 17.6 174 366-548 854-1047(1205)
479 PF08801 Nucleoporin_N: Nup133 84.8 36 0.00077 36.3 16.1 30 521-550 191-220 (422)
480 TIGR02276 beta_rpt_yvtn 40-res 84.7 4.6 0.0001 27.0 6.1 40 353-392 1-41 (42)
481 PF11635 Med16: Mediator compl 84.4 71 0.0015 37.0 19.1 72 473-544 260-345 (753)
482 COG5290 IkappaB kinase complex 84.2 11 0.00023 42.3 11.4 95 344-442 247-349 (1243)
483 COG3292 Predicted periplasmic 83.4 74 0.0016 34.7 18.4 116 459-580 362-482 (671)
484 PF11715 Nup160: Nucleoporin N 83.3 6.1 0.00013 43.8 9.8 72 312-383 158-258 (547)
485 PF08801 Nucleoporin_N: Nup133 83.0 36 0.00079 36.2 15.3 31 473-503 190-220 (422)
486 PF02333 Phytase: Phytase; In 82.9 65 0.0014 33.7 23.9 201 354-558 67-300 (381)
487 PF03022 MRJP: Major royal jel 82.9 55 0.0012 32.9 19.1 160 409-571 34-243 (287)
488 PF05935 Arylsulfotrans: Aryls 82.5 79 0.0017 34.4 25.3 113 349-468 153-310 (477)
489 TIGR02276 beta_rpt_yvtn 40-res 81.7 7.4 0.00016 25.9 6.2 40 529-569 1-41 (42)
490 PF14781 BBS2_N: Ciliary BBSom 81.2 37 0.00081 29.7 13.0 114 349-464 4-130 (136)
491 PF14761 HPS3_N: Hermansky-Pud 81.1 41 0.00089 32.0 12.7 52 442-493 29-80 (215)
492 PF11715 Nup160: Nucleoporin N 80.8 7 0.00015 43.3 9.1 77 482-558 156-257 (547)
493 smart00036 CNH Domain found in 80.6 69 0.0015 32.5 28.1 234 312-559 13-280 (302)
494 KOG1900 Nuclear pore complex, 80.5 12 0.00026 44.3 10.7 137 449-590 97-270 (1311)
495 PRK14131 N-acetylneuraminic ac 80.4 80 0.0017 33.1 22.8 26 354-379 84-120 (376)
496 PF13449 Phytase-like: Esteras 80.2 74 0.0016 32.6 19.1 161 299-490 19-232 (326)
497 TIGR03118 PEPCTERM_chp_1 conse 79.8 72 0.0016 32.2 25.5 233 346-582 25-323 (336)
498 KOG1896 mRNA cleavage and poly 79.6 1.4E+02 0.0031 35.6 19.2 214 352-569 991-1241(1366)
499 KOG1983 Tomosyn and related SN 79.6 66 0.0014 38.4 16.7 32 297-329 33-64 (993)
500 COG5290 IkappaB kinase complex 79.5 63 0.0014 36.6 15.0 261 298-580 75-355 (1243)
No 1
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-86 Score=657.31 Aligned_cols=461 Identities=51% Similarity=0.914 Sum_probs=432.3
Q ss_pred cccccCCCCceeeeCcChhhhcCCCCCCCCCCCcccccccccccccceeeeeccCchhhhhhccceeeeeeeeCCCCCcc
Q 007768 67 QSRPIDPSQHFIAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGNNY 146 (590)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (590)
....+||+.++|.|||+|++||+|+.||+|||++.++ .+|
T Consensus 41 ~v~~~dp~~ke~~~np~~~~l~~p~~Gp~n~f~s~q~----------------------------------------~~~ 80 (503)
T KOG0282|consen 41 QVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQ----------------------------------------TRF 80 (503)
T ss_pred cccccCCcchhhccCCchhhhcccccCCCCcchhhhh----------------------------------------hhh
Confidence 3567999999999999999999999999999996643 568
Q ss_pred cCChhhhhhcCCcceeecchhHHHHHHHHHhhhhccccCCcccCCCCCCCCCCCcccccccCCCCCCCCccCccccccHH
Q 007768 147 VGDFEALEKNNGVSVYNIRQNEQKKRKLEKKQEAEEVDGTAVDVDPAEFNNPATDTWLMKNRKSPWAGKKEGVQTELSEE 226 (590)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 226 (590)
||+.+.++++.|.++|+..++++++||++++ ++.+.+++|.|||.++.+ |....+++++
T Consensus 81 vg~~~~ae~~~g~t~fe~~~k~~~~Rk~~~~-------------dd~~~idg~~gpWsr~~d--------E~~vak~~~~ 139 (503)
T KOG0282|consen 81 VGDVKKAEAEKGVSLFESKKKGGEQRKRVGN-------------DDSADIDGYSGPWSRYVD--------EKTVAKPTPE 139 (503)
T ss_pred ccchhhhhcccCceeecccccccchhhhccC-------------CChhhccCCCCCcccccc--------cccccCCCcc
Confidence 9999999999999999998888877776541 234558999999999887 5566778888
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcccCCcceeecccccccccceeecCCcccccc--CCCccCCcceEEEecCCCCCeeE
Q 007768 227 QKKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAA--NDHCYIPKRLVHTWSGHTKGVSA 304 (590)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~--~~~~~~p~~~i~~l~gH~~~V~~ 304 (590)
+++.++++..++++++...+.......+.+++|+++..|||+|+|+++|.+.... ...||+|++++++|.||+.+|++
T Consensus 140 ~~~~~de~~~k~~e~~~~~e~~~~~~ee~s~~h~k~~~dyq~r~~l~~P~dv~vnlR~~rc~~Pkk~~~~~~gH~kgvsa 219 (503)
T KOG0282|consen 140 EQKQMDEIVKKRQEKKKEKEDSEHMAEESSTLHGKSLFDYQGRSYLQKPKDVGVNLREERCYLPKKLSHNLSGHTKGVSA 219 (503)
T ss_pred hhhhhhhhhhhhhhhccccccccccccccccccccchhhccccccccCCcccCCccccceeeccHhheeeccCCccccch
Confidence 9999999988888887766667777889999999999999999999999987543 46999999999999999999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC
Q 007768 305 IRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 305 l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~ 384 (590)
+.|+|..+++|++|++|+.|+||+++..+.++++|.+|..+|.+++|+++|..|+|+|+|+.|++||+++|+++..|..+
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~ 299 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD 299 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC
Confidence 99999669999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 007768 385 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
..+.|+.+.|++ .++|++|+.|+.|+.||+|++++++++..|.++|..|.|.++|++|+++++|++++||+.+.+..+
T Consensus 300 ~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 300 KVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred CCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence 999999999987 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 544 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~ 544 (590)
+.+....++.++++..+|+++++++.+.|+.|.+|.+....+++..+.+.||...++.+.+.|||||++|++|+.+|.++
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 545 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 545 iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+||+++.+++..+++|.++|+.+.|||...+.|||||+||.|+|||
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999999999997
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-44 Score=349.05 Aligned_cols=324 Identities=23% Similarity=0.418 Sum_probs=282.8
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007768 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~D 321 (590)
++.+..-...+.+++..+.+++.|.+.|.|-. ....+.++.+||...|.||+|+|+ |..||+|+.|
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~-------------~TeTp~~t~KgH~~WVlcvawsPD-gk~iASG~~d 178 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDL-------------DTETPLFTCKGHKNWVLCVAWSPD-GKKIASGSKD 178 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeecc-------------CCCCcceeecCCccEEEEEEECCC-cchhhccccC
Confidence 44455555678888888999999999999933 344677899999999999999999 9999999999
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEcc-----CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 396 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-----dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
|.|++||........+.+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+..+ ...+.++.+-+
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VTCvrwGG 257 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVTCVRWGG 257 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceEEEEEcC
Confidence 99999999666677889999999999999977 5789999999999999999999999888554 33344444433
Q ss_pred CCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEe-----------CCC------------------------
Q 007768 397 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-----------DSN------------------------ 441 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~-----------p~~------------------------ 441 (590)
..++++|+.|++|++|+...|.+...+.+|...|+.|+++ |.+
T Consensus 258 --~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 258 --EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred --CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 3689999999999999999999999999999999999887 222
Q ss_pred -CEEEEEeCCCcEEEEECCCCc-EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007768 442 -RRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 442 -~~l~s~s~Dg~I~iwdl~~~~-~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
.+|++||+|.++.+|+-.... ++..+ .+|..-|..+.|+|+++++|+++.|..|++|+.++++.+ ..|+||.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l---asfRGHv-- 409 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL---ASFRGHV-- 409 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh---hhhhhcc--
Confidence 359999999999999976544 44444 468899999999999999999999999999999998665 6788884
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
..|..++||.|.++|++|+.|.++++|++++.++..-+.+|...|.++.|+| ++..+++||.|..+++|
T Consensus 410 ~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 410 AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLW 478 (480)
T ss_pred ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEee
Confidence 6688999999999999999999999999999999999999999999999999 77899999999999999
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-44 Score=343.69 Aligned_cols=293 Identities=23% Similarity=0.419 Sum_probs=257.4
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
.++-..+.||.++|.|++|+|+ +..|++|+.|.++++||+ .+..++.+.++|...|.|++|+|||+.|++|+.||.|+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~-~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDL-DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred ceeccccCCCCCcEEEEEecCC-CceEEecCCCceEEeecc-CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 3566788999999999999998 999999999999999999 68899999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEecCCCcc--eEEEEecCC--CCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007768 369 YWDTETGQVIRTFSTGKIP--YVVKLNPDD--DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~~~--~~~~~~~~~--~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
+||..+|+++..--.+|.. .+++|.|.. ....+|++++.||.|+|||+..+.++..+.+|..+|+|+.|--+| +|
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LI 261 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eE
Confidence 9999999887665555544 455555432 223589999999999999999999999999999999999997554 99
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEc-----------CCCC-------------------------EEE
Q 007768 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH-----------PNTN-------------------------WLA 488 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~s-----------p~g~-------------------------~la 488 (590)
+++|.|++|++|+...+.++..+. +|.+.|+.++++ |.++ .|+
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 999999999999998888777765 588888888876 3233 499
Q ss_pred EEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEE
Q 007768 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 489 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+|+.|.++.+|+..... ..+....+| ...|+.+.||||+++|++++-|..|++||.++|+.+.+|++|-+.|..++
T Consensus 341 SgsDd~tlflW~p~~~k--kpi~rmtgH--q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSK--KPITRMTGH--QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred EecCCceEEEecccccc--cchhhhhch--hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 99999999999865432 234567778 56788999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEcC
Q 007768 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|+. +.++|++|+.|.+|++||
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEE
Confidence 999 788999999999999997
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.4e-40 Score=308.97 Aligned_cols=292 Identities=23% Similarity=0.361 Sum_probs=258.0
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
+..++|+||.+.|.++.|+++ .++|++++.||.+.|||.. +...+..+.-....|..++|+|.|+++++|+.|+...|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~-TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSF-TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcc-cccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 445899999999999999999 9999999999999999994 55666677778899999999999999999999999999
Q ss_pred EECCCC--c---EEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC-CCCE
Q 007768 370 WDTETG--Q---VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRR 443 (590)
Q Consensus 370 Wd~~t~--~---~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p-~~~~ 443 (590)
|++.+. + .+...-.++..+..++.+.++ ..|++++.|.++.+||+++++.++.|.+|.+.|.++.++| +++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 999855 2 222233455555444444333 5699999999999999999999999999999999999999 9999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceE
Q 007768 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
|++|+.|+..+|||++.+.+.+.+. .|...|.+++|+|+|.-|++|+.|++.++||++....+.. +........|+
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~---ys~~~~~~git 277 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV---YSHDSIICGIT 277 (343)
T ss_pred EEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee---eccCcccCCce
Confidence 9999999999999999998888875 6999999999999999999999999999999998766643 33444457789
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+++||..|++|++|..|..+.+||.-.++.+..+.+|...|.++..+| ++.-|+||++|.+||||.
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999 788999999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-41 Score=328.88 Aligned_cols=284 Identities=24% Similarity=0.400 Sum_probs=260.4
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccC--CCEEEEEecCCeEEEEEC
Q 007768 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 295 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~I~vWd~ 372 (590)
--|-+.+|..+.|+++ +..|+|||.+|.++||+. .+...+.++.+|...|.++.|+|. +..++||+.||++++|++
T Consensus 171 Q~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~-~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSV-PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred hccCCCcceeeEeecC-CCeEEEeecCCceeEeec-CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 3478899999999999 999999999999999999 577999999999999999999995 679999999999999999
Q ss_pred CCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC
Q 007768 373 ETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK 451 (590)
Q Consensus 373 ~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg 451 (590)
++...+..+..+ ..+..++|+|++ .+|.+++.|.+-++||++++..+....+|...|.+|+|.++|..+++|+.|.
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG---~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSG---KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCC---ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence 998888888654 334566777755 7999999999999999999998888899999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-C
Q 007768 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-D 530 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-d 530 (590)
.-+|||++++.++..+.. |...|.+|.|+|+|..||+|+.|++++|||++....+ ..+.+| ...|+.|.|+| .
T Consensus 326 ~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l---y~ipAH--~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL---YTIPAH--SNLVSQVKYSPQE 399 (459)
T ss_pred hhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccccc---eecccc--cchhhheEecccC
Confidence 999999999999998875 9999999999999999999999999999999987653 556666 56688999999 7
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 531 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 531 g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|.+|++++.|++++||...++.+++++.+|.+.|.++.+++ ++..++|++.|.+|++|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 89999999999999999999999999999999999999999 788999999999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-38 Score=308.12 Aligned_cols=282 Identities=24% Similarity=0.393 Sum_probs=251.0
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCC-CCCEEEEEeCC
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMD 321 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~-~g~~L~sgs~D 321 (590)
..++.....+...+....+++.+...+.|-.+. ...+++|.||+..|.++.|+|. ++..|+||+.|
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~-------------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-------------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCC-------------cceeEEEeccccceeeEEEccCCCccceeeeccC
Confidence 334555566788888889999999999995542 3678999999999999999998 57899999999
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCc
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQN 400 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~ 400 (590)
|++++|++ ....++..+.+|...|..++|+|+|++|+|+|+|.+-++||++++..+..... ...+..++|.+++ .
T Consensus 241 gtvklw~~-~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG---S 316 (459)
T KOG0272|consen 241 GTVKLWKL-SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG---S 316 (459)
T ss_pred Cceeeecc-CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC---c
Confidence 99999999 56689999999999999999999999999999999999999999987765544 3456678888866 6
Q ss_pred EEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEE
Q 007768 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 401 ~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
++++|+.|..-+|||++++.++..+.+|..+|.++.|+|+|..|++||.|++++|||++....+..+. .|..-|+.+.|
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~ 395 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKY 395 (459)
T ss_pred eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEe
Confidence 89999999999999999999999999999999999999999999999999999999999888866664 69999999999
Q ss_pred cC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 481 HP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 481 sp-~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
+| .|.+|++++.|++++||...+..++ +.+.|| .+.|.++++++++++|++++.|.++++|.
T Consensus 396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~---ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 396 SPQEGYFLVTASYDNTVKIWSTRTWSPL---KSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCCeEEEEcccCcceeeecCCCcccc---hhhcCC--ccceEEEEeccCCceEEEeccCceeeecc
Confidence 99 7889999999999999998886554 677888 67799999999999999999999999995
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-37 Score=291.48 Aligned_cols=293 Identities=24% Similarity=0.481 Sum_probs=258.7
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
++..+.||.+.|+.+.|+|+ |.+|+||+.|..|.+|+++...+....+++|+++|..+.|.+|++.|++|+.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 34566799999999999997 99999999999999999977778888999999999999999999999999999999999
Q ss_pred ECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
|+++|++++.+..+.. .+-.+.|...+..++.+|+.|+++++||+|+...++.+. ..-+++++.|...+..+++|+-|
T Consensus 118 D~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 9999999999866543 344444776777899999999999999999998888774 45689999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc-cccccCcccc--cceEEEEE
Q 007768 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVA--GYACQVNF 527 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~--~~v~~v~~ 527 (590)
+.|++||++.......+. +|...|+.+..+|+|.++.+-+.|+++++||++......+ ...+.++... .....++|
T Consensus 196 n~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred CceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999888776664 6999999999999999999999999999999986544433 4556665543 33456899
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
||+++++.+|+.|..+++||..+...+..+.+|.+.|.++.|+| ...+|.+|+.|.+|.+
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYL 334 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEe
Confidence 99999999999999999999999999999999999999999999 6789999999999976
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=292.02 Aligned_cols=293 Identities=26% Similarity=0.468 Sum_probs=260.4
Q ss_pred CCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEe
Q 007768 283 DHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 283 ~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s 362 (590)
+..-.|.++.+.++||.+.|.||++.|- ..+|++|+.|++|+|||+ .++++..++.||-..|+.+++++-..+|++|+
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDl-atg~LkltltGhi~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDL-ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEc-ccCeEEEeecchhheeeeeeecccCceEEEec
Confidence 3456788999999999999999999998 899999999999999999 79999999999999999999999999999999
Q ss_pred cCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 363 YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
.|+.|+.||++..+.++.+..+ ..++++.++|.- ..|++|+.|..+++||+++...+..+.+|..+|.++.+.|-+
T Consensus 213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl---dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL---DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD 289 (460)
T ss_pred CCCeeEEEechhhhhHHHhccccceeEEEeccccc---eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC
Confidence 9999999999999999988654 345677777755 579999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
..+++||.|++|++||++.++....+.. |...+.+++.+|....||+++.|+ |+.|++..+..+. .+.+| ...
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~---nlsgh--~~i 362 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQ---NLSGH--NAI 362 (460)
T ss_pred CceEEecCCceEEEeeeccCceeEeeec-ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhh---ccccc--cce
Confidence 9999999999999999999998888764 888999999999999999988765 8999998776553 35666 466
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec--------CCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~--------h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+.+++...|| ++++|+.+|.|.+||+++|-.++.+.. ....|.+.+|.. .+..|+||..|.+|++|
T Consensus 363 intl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 363 INTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMY 436 (460)
T ss_pred eeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEE
Confidence 7778888776 788999999999999999987766632 234688899987 78899999999999999
No 9
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-37 Score=297.90 Aligned_cols=295 Identities=23% Similarity=0.407 Sum_probs=259.8
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--eeEEEeccCCCCeEEEEEccCCCEEEEEe
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s 362 (590)
.-+|.+..+++..|+..|.-+.|+++ |++|||++.|.+..||.+.... +...++.+|..+|..+.||||.++|++|+
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 34778888999999999999999999 9999999999999999985444 46788999999999999999999999999
Q ss_pred cCCeEEEEECCCCcEEEEecCC--CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCc-CCceeEEEEeC
Q 007768 363 YDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVD 439 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h-~~~V~~i~~~p 439 (590)
.|..+.+||+.+|.+...+..+ ..+.+++|.|++. .+++|+.|+.|..||+.... .....+- ...|.+++..+
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC
Confidence 9999999999999999988776 5667888888764 59999999999999997543 3333332 35699999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
+|+++++.+.|..|++++.........+. ...+|++++++.+++++++.-.+..|.+||+..... ...+.||...
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l---v~kY~Ghkq~ 439 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL---VRKYFGHKQG 439 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH---HHHhhccccc
Confidence 99999999999999999998777665553 567899999999999999999999999999985433 4567888888
Q ss_pred cceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 520 GYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 520 ~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.++..-||-- +..++++|+.|+.|+||+..+++++..+.+|...|.+++|+|.+..++|++|+||+||||
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 8888888865 458999999999999999999999999999999999999999999999999999999999
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-35 Score=274.01 Aligned_cols=289 Identities=24% Similarity=0.400 Sum_probs=243.5
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC----CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN----SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~----~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+.-++++|++.|+.++..+.+...|+++++|.++.+|++.. .+..++.+.||+..|..+..+++|+++++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 355688999999999999999889999999999999999843 3467899999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC-cCCceeEEEEeCC--C
Q 007768 366 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDS--N 441 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~-h~~~V~~i~~~p~--~ 441 (590)
.+++||+.+++..+.|..+ ....++++++++ ..+++|+.|.+|.+|++-.......... +...|+|++|+|+ .
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn---~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDN---RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCC---ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999999988888654 345577777765 5699999999999999976543333322 3789999999998 6
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
.+|++++.|++|++||+++.+....+. +|.+.++.++++|||.++++|+.||.+.+||++.+..+..+. + ...
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a--~~~ 235 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----A--FDI 235 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----C--CCe
Confidence 799999999999999999887666554 699999999999999999999999999999999876653322 2 466
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec----C-----CCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC----H-----EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~----h-----~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|.+++|+|+.-.|+.+. +-.|+|||+.++.++..++. . .-.+.+++|++ ++..|++|-.|+.|++|.
T Consensus 236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEE
Confidence 88999999876666665 44599999999988777652 1 33578899999 788999999999999993
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-36 Score=290.95 Aligned_cols=289 Identities=27% Similarity=0.454 Sum_probs=261.1
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
.+.+.+.||..+|+.+-|+|. -.++++++.|++|++||. .++++.+.++||...|.+|+|+..|++|++|+.|-.+++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~-~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDT-ETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEc-cchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 566778899999999999999 889999999999999999 788999999999999999999999999999999999999
Q ss_pred EECCC-CcEEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007768 370 WDTET-GQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 370 Wd~~t-~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
||..+ .++++... ..+.+.++++.|.+ .++++++.|.+|+.|++.++.++.++.+|...|..+..+.||..++++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecC---CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 99987 44554443 34566778888875 689999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC---------------CCEEEEEEcCCeEEEEEcCCceeeccccc
Q 007768 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN---------------TNWLAAQSLDNQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~---------------g~~la~~s~dg~I~iwd~~~~~~~~~~~~ 512 (590)
+.|.+|++|-+.+..+...+. .|.++|.+++|.|. +.++.+++.|++|++||+.++..+ .+
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL---~t 329 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL---FT 329 (406)
T ss_pred CCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE---EE
Confidence 999999999999886665554 48899999999872 358999999999999999998666 55
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+.+| ..+|+.++|+|.|+||+++..|++|++||+++++++.++.+|...|+++.|+. ...+++||+-|.++++|.
T Consensus 330 L~gh--dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 330 LVGH--DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred Eecc--cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeee
Confidence 6677 68899999999999999999999999999999999999999999999999998 677999999999999994
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.5e-35 Score=267.81 Aligned_cols=270 Identities=20% Similarity=0.405 Sum_probs=239.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc--EEEEecCC-Ccce
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--VIRTFSTG-KIPY 388 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--~~~~~~~~-~~~~ 388 (590)
.-+|+++|.|.+|++|.. .++.|.++++...+.|+.+...|+++.|++++. ..|++||++++. ++.+|..+ +.+.
T Consensus 10 ~viLvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 458999999999999999 799999999988899999999999999999886 689999999876 46777665 5667
Q ss_pred EEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007768 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~ 468 (590)
++.|..++ ..+++|+.||.++|||+|...+.+.+ .|..+|+++..+|+...|++|..+|.|++||+....+...+.
T Consensus 88 aVgF~~dg---rWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 88 AVGFQCDG---RWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEEEeecC---eEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 77887755 79999999999999999997666666 477999999999999999999999999999999988877777
Q ss_pred cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce---eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007768 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 545 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i 545 (590)
.....+|.++++.|+|.+|+.+...|..++|++.+.. .+.++..+..| .+++..+.+|||+++|++++.|.+++|
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEE
Confidence 6677899999999999999999999999999986533 33444556666 678999999999999999999999999
Q ss_pred EeCCCC-eEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 546 WDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 546 wd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|+..+. +....+.+|..-+..++|+. ++.+|+|++.|+.+++||
T Consensus 242 wn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWD 286 (311)
T ss_pred EecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecc
Confidence 999988 77788899999999999999 788999999999999997
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.1e-34 Score=282.73 Aligned_cols=287 Identities=30% Similarity=0.569 Sum_probs=251.3
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
++++++|.++|++++|+|+ +++|++++.||.|++|++ ..+.....+..|...+..+.|++++++|++++.+|.|++|+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEe-eCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 4567899999999999999 899999999999999999 56667788889999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 372 TETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 372 ~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
+.+++.+..+.... .+.++.+.+. ..++++++.++.|.+||+++++....+..|...|.++.|+|++.++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 99987777776543 4566666665 3577777779999999999999899998899999999999998888888889
Q ss_pred CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007768 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
+.|++||++....+..+. .+...+.++.|+|+++.+++++.++.|++||+........ +..+ ...+.++.|+|+
T Consensus 157 ~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~---~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 157 GTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT---LRGH--ENGVNSVAFSPD 230 (289)
T ss_pred CcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc---hhhc--CCceEEEEEcCC
Confidence 999999998877776665 4777899999999999999999999999999987554433 3233 347888999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 531 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 531 g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+.++++++.+|.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.||.|++||
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 99999998899999999999999999999999999999999 678999999999999997
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-34 Score=287.21 Aligned_cols=295 Identities=22% Similarity=0.345 Sum_probs=249.5
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec---cCCCCeEEEEEccCCCEEEEEec
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fspdg~~l~s~s~ 363 (590)
.|.+.-++++.|+.-|+|++|+|+ |.++++.+.||+|.|||- .+++.+..+. +|.+.|.+|+|+||++.|++++.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDG-ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDG-KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcC-CCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 467888999999999999999999 999999999999999998 6888888887 89999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCcc--eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 364 DKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
|.+++|||+.+.++++++..+... ..+.+.+.. ..|++.+.+|.|.+++.........+.+|...|++++.++++
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk---d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK---DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeC---CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence 999999999999999999887662 333334433 359999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEE-----------EEee------------------------------------------
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVI-----------KYIS------------------------------------------ 468 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~-----------~~~~------------------------------------------ 468 (590)
.+|++|+.||.|.-|+...+..- ..+.
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la 412 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA 412 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence 99999999999999997542211 0000
Q ss_pred ---------------------------cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 469 ---------------------------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 469 ---------------------------~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
.+......+++++|++..+++|+.|+.|+||.+....... ......| .+.
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e-e~~~~~h--~a~ 489 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE-EAKLLEH--RAA 489 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc-eeeeecc--cCC
Confidence 0011234578899999999999999999999997754322 2223334 577
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEE-EEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR-TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~-~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++.++||||+.||++|+..+.+.+||+.+.+... .+.-|+..|.+++|+| +..+||||+.|-+|.||+
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEE
Confidence 9999999999999999999999999999887743 3345999999999999 677999999999999995
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-34 Score=287.45 Aligned_cols=313 Identities=22% Similarity=0.402 Sum_probs=265.5
Q ss_pred eecccccccccceeecCCccccccCCCccCCcceEEE--ecC----CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC
Q 007768 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHT--WSG----HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN 331 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~--l~g----H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~ 331 (590)
++...+.|...|.|......-. |-....+.|. +-+ -+..|++|+|+.+ |.+||+|+.||.++||+.
T Consensus 193 llasg~~~s~ari~~l~e~~~~-----~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~LatG~~~G~~riw~~-- 264 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNI-----GSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLATGSEDGEARIWNK-- 264 (524)
T ss_pred hhhccCCccceeeeeehhhccc-----cchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeEEEeecCcEEEEEec--
Confidence 5567778888898866541110 0000011111 112 2467999999999 999999999999999997
Q ss_pred CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc-eEEEEecCCCCCcEEEEEECCCe
Q 007768 332 SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 332 ~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
.+.++.++..|.++|.+|.|+..|++|++++.|+++.+||..++...+.|.....+ .-+.|..+. .|++++.|+.
T Consensus 265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~----~F~ts~td~~ 340 (524)
T KOG0273|consen 265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND----EFATSSTDGC 340 (524)
T ss_pred CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc----eEeecCCCce
Confidence 88999999999999999999999999999999999999999999999999887777 446666543 4999999999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCC------
Q 007768 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT------ 484 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g------ 484 (590)
|+++-+....++.++.+|.++|++|.|+|.+.+|+++|+|++++||..........+. .|...|..+.|+|.|
T Consensus 341 i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~ 419 (524)
T KOG0273|consen 341 IHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNP 419 (524)
T ss_pred EEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCC
Confidence 9999999999999999999999999999999999999999999999998887777765 588889999999954
Q ss_pred ---CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC
Q 007768 485 ---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 485 ---~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
..+++++.|++|++||+..+.++.. +..| ..+|.+++|||+|+|+++|+.||.|++|+.+++++++.+.+.
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~gv~i~~---f~kH--~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~- 493 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESGVPIHT---LMKH--QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT- 493 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCCceeEe---eccC--CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-
Confidence 5799999999999999998876644 5555 567889999999999999999999999999999999999865
Q ss_pred CcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 562 GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 562 ~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+.|..++|+. .+.+|..+-.||.+++-|
T Consensus 494 ~~Ifel~Wn~-~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 494 GGIFELCWNA-AGDKLGACASDGSVCVLD 521 (524)
T ss_pred CeEEEEEEcC-CCCEEEEEecCCCceEEE
Confidence 4599999999 668899999999998864
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.2e-34 Score=261.87 Aligned_cols=294 Identities=20% Similarity=0.360 Sum_probs=254.6
Q ss_pred CcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC
Q 007768 254 DKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG 333 (590)
Q Consensus 254 ~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~ 333 (590)
....++.+.++|..+|.|-+ ...+|.++++-..+.|+.|.+.|+ ++.|++++. ..|++||+....
T Consensus 8 d~~viLvsA~YDhTIRfWqa-------------~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~n 72 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQA-------------LTGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNN 72 (311)
T ss_pred CCceEEEeccCcceeeeeeh-------------hcCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCC
Confidence 35678999999999999955 456889999988999999999999 888888875 579999995444
Q ss_pred -eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEE
Q 007768 334 -KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 334 -~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
.++.+|.+|.+.|+++.|..+|+++++||.||+++|||++...+.+.+.....+.++.++|+. ..|++|..+|.|+
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ---teLis~dqsg~ir 149 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ---TELISGDQSGNIR 149 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc---ceEEeecCCCcEE
Confidence 389999999999999999999999999999999999999998888889888888888888865 5699999999999
Q ss_pred EEeCCCCceEEEEc-CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc------EEEEeecCCCCceeEEEEcCCCC
Q 007768 413 QWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV------VIKYISEPHMHSMPSISLHPNTN 485 (590)
Q Consensus 413 iwD~~t~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~------~~~~~~~~~~~~i~~i~~sp~g~ 485 (590)
+||+....+...+. ....+|.+++..|+|.+++.+...|.+++|++-... ++..+ ..|...+..+.++|+++
T Consensus 150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~-~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF-QAHNGHILRCLLSPDVK 228 (311)
T ss_pred EEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe-ecccceEEEEEECCCCc
Confidence 99999886665553 345689999999999999999999999999986532 22222 35888899999999999
Q ss_pred EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEE
Q 007768 486 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI 565 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~ 565 (590)
+|++++.|.+++||++.+. +.....+.+| ..++..++||.||+||++|+.|+.+++|++..++.+....+|.....
T Consensus 229 ~lat~ssdktv~iwn~~~~--~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~v 304 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDF--FKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAV 304 (311)
T ss_pred EEEeecCCceEEEEecCCc--eeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccE
Confidence 9999999999999999876 3334566777 57899999999999999999999999999999999999999998877
Q ss_pred EEEEc
Q 007768 566 GCEWH 570 (590)
Q Consensus 566 ~v~~s 570 (590)
|++..
T Consensus 305 c~~ln 309 (311)
T KOG0315|consen 305 CVALN 309 (311)
T ss_pred EEEee
Confidence 77764
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=262.08 Aligned_cols=288 Identities=25% Similarity=0.432 Sum_probs=252.8
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCe
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
+|.+-.+.+..|.++|..++|+-+ |++.++|+.|.+|++|+. ..+.+++++.+|...|.+++.+.|+..|++|+.|+.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred CcchhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecc-cccceeeeecCCCceeeeccccccccccccCCCCce
Confidence 466778899999999999999999 999999999999999999 789999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEeCCCCE
Q 007768 367 IKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~--~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
|.+||+++|+.++.+..+. .+..+.|+.. ..++++|+.|.++++||.++. ++++.+......|.+|... +..
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee---sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEE---SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE 157 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCc---ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE
Confidence 9999999999999997643 3445666543 368999999999999999875 7889998888999999986 568
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceE
Q 007768 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
|++||.||+++.||++.+...... ..++|++++|+++++.+++++.|++|++.|-.+++.+ +.+.||.+..+-.
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL---~sYkGhkn~eykl 231 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL---KSYKGHKNMEYKL 231 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHH---HHhcccccceeee
Confidence 999999999999999998765443 5679999999999999999999999999999888655 6788888888888
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCc-EEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV-CIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~-V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
..+++.....+++|+.||.|++||+.....+..+..|... |+++.++|... .|++++ ++.+.+|
T Consensus 232 dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~-~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 232 DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD-DFITAT-GHGDLFW 296 (307)
T ss_pred eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc-ceeEec-CCceece
Confidence 8899999999999999999999999999999999999887 89999999544 455554 3344444
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-33 Score=263.84 Aligned_cols=280 Identities=21% Similarity=0.384 Sum_probs=234.1
Q ss_pred ceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCee
Q 007768 256 STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC 335 (590)
Q Consensus 256 s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~ 335 (590)
..++.+...|...=.|.....+ ..-..+++.|.||+..|..+..+++ +++.++++.|+++++||+ ..++.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd--------~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl-~~g~~ 97 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDD--------IKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDL-ATGES 97 (315)
T ss_pred CceEEEcccceEEEEEEeccCc--------cccCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEe-cCCcE
Confidence 3445566777777777554442 2234678999999999999999999 999999999999999999 67899
Q ss_pred EEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC--CCcceEEEEecCCCCCcEEEEEECCCeEEE
Q 007768 336 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 413 (590)
.+.|.+|...|.+++|++|.+.|++|+.|++|++|++-.......... ..-+.+++|+|... ..+|++++.|+.|++
T Consensus 98 t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~-~p~Ivs~s~DktvKv 176 (315)
T KOG0279|consen 98 TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES-NPIIVSASWDKTVKV 176 (315)
T ss_pred EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC-CcEEEEccCCceEEE
Confidence 999999999999999999999999999999999999986555444443 34566888888753 478999999999999
Q ss_pred EeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC
Q 007768 414 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 414 wD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d 493 (590)
||+++-++...+.+|.+.++.++++|||..+++|+.||.+.+||++.++.+..+ .+...|.+++|+|+.-+|+.+. +
T Consensus 177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~ 253 (315)
T KOG0279|consen 177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-A 253 (315)
T ss_pred EccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-C
Confidence 999999999999999999999999999999999999999999999999987766 6888999999999987777665 4
Q ss_pred CeEEEEEcCCceeeccccc-ccC---cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 494 NQILIYSTRERFQLNKKKR-FAG---HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 494 g~I~iwd~~~~~~~~~~~~-~~~---~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
..|+|||+.++..+..+.. +.+ ........+++||+||+.|++|..|+.|++|.+.
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 5599999988765543321 111 1113446689999999999999999999999864
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4e-33 Score=268.74 Aligned_cols=286 Identities=21% Similarity=0.347 Sum_probs=243.2
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
+.+|..|+..|.+++.+|+ .++++||+.|..-.||++ .++..+..+.+|...|+++.|+.+|.+|+||+.+|.|+||.
T Consensus 57 ~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~-~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDI-STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred eeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEc-cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 5788999999999999996 999999999999999999 68889999999999999999999999999999999999999
Q ss_pred CCCCcEEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 372 TETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 372 ~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
..++.....+. ......-+.|+| ..++|++|+.||.|.+|.+.++...+.+.+|..++++-.|.|+|++++++..|
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp---~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHP---RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred cccCceEEEeecccCceEEEEecc---cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 99999888775 344455566666 45899999999999999999988899999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCceeEEE------------------------------EcC------------------
Q 007768 451 KSLRVWEFGIPVVIKYISEPHMHSMPSIS------------------------------LHP------------------ 482 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~------------------------------~sp------------------ 482 (590)
|+|++|++.+..++..+........+++. ..+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 99999999999888777521111111111 111
Q ss_pred -----CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE
Q 007768 483 -----NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 483 -----~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
.-.++|+|+.||+|.|||+...... ..-.| ...|+.+.|-+ ..+|++++.+|.|++||.++|+++.++
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R----~~c~h--e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLR----HICEH--EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhh----eeccC--CCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence 1135678888999999998754322 12223 35588999998 789999999999999999999999999
Q ss_pred ecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 558 KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 558 ~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+|...|.+++++| +.++++|+|.|++.+||+
T Consensus 365 ~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 365 TGHQMGILDFALSP-QKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ecCchheeEEEEcC-CCcEEEEecCCCeEEEEe
Confidence 99999999999999 788999999999999985
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=282.66 Aligned_cols=291 Identities=19% Similarity=0.396 Sum_probs=249.3
Q ss_pred CCcceEEEe-cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 287 IPKRLVHTW-SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 287 ~p~~~i~~l-~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
++.+.+++- ..-..+|..|+|.|+ |+.|++|+..|.+.+|+. ..-..-..++.|..+|+++.|+++|.+++||+.+|
T Consensus 83 ~~tKf~h~s~NKvkc~V~~v~WtPe-GRRLltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG 160 (464)
T KOG0284|consen 83 FTTKFVHTSSNKVKCPVNVVRWTPE-GRRLLTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGG 160 (464)
T ss_pred cccceEeccccccccceeeEEEcCC-CceeEeecccccEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCc
Confidence 344455543 345668999999999 999999999999999997 34344445678999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEecCC--CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007768 366 NIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
.|++|+..-... +.+... ..+.+++|+|.+ ..|++++.||.|+|||....+....+.+|.-.|.++.|+|....
T Consensus 161 ~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnD---skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 161 MIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPND---SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred eEEecccchhhh-HHhhHhhhhhhheeccCCCC---ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce
Confidence 999999764433 333333 467788888854 56999999999999999998888888999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceE
Q 007768 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
++++|.|..|++||.+++.++..+. .|...|..+.|.|++++|++++.|..+++||+++. ..+..+++| ...++
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~H--kkdv~ 310 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGH--KKDVT 310 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcc--hhhhe
Confidence 9999999999999999999998886 48999999999999999999999999999999854 344667778 46688
Q ss_pred EEEEcC-CCCEEEEEcCCCcEEEEeCCCCeEEEEE-ecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 524 QVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 524 ~v~~sp-dg~~l~sgs~dg~I~iwd~~t~~~~~~l-~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++.|+| ...+|.+|+.||.|.+|.+...+++..+ .+|.+.|++++|+| =+.+|++|+.|.++++|.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWT 378 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeec
Confidence 999999 5668889999999999999866666655 48999999999999 678999999999999993
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-33 Score=298.23 Aligned_cols=291 Identities=27% Similarity=0.558 Sum_probs=249.7
Q ss_pred EEEecCC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe--eEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 292 VHTWSGH-TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 292 i~~l~gH-~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
..++.+| ...|+|+.|+++ |..|++++.++.+++|+. ...+ .++.+.+|...|++++|+|++.++++++.|++|+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~-~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKL-EGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeec-ccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 5666665 889999999999 888999999999999999 4555 7778899999999999999999999999999999
Q ss_pred EEEC-CCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007768 369 YWDT-ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 369 vWd~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
|||+ ..+.+++++. +|...+.++.+.+.. +++++|+.|+.|++||+++++++..+.+|.+.|++++|++++++|+++
T Consensus 229 iwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 9999 5558888886 444443444444344 799999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCc--EEEEeecCCCC-ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc-cceE
Q 007768 448 SDDKSLRVWEFGIPV--VIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA-GYAC 523 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~--~~~~~~~~~~~-~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~v~ 523 (590)
+.|+.|+|||+.+.. +...+...... ++.++.|+|++.+|++++.|+.+++|++...... ..+.+|... ..+.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~---~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV---GTYTGHSNLVRCIF 383 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce---eeecccCCcceeEe
Confidence 999999999999988 44555543333 6999999999999999999999999999876554 344455433 2334
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC-CCcEEEEEEcCCCCCEEEEEe--CCCcEEEcC
Q 007768 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCG--WDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g--~Dg~I~iWD 590 (590)
+..+++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.|+| ...++++++ .|+.|++|.
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEec
Confidence 4566889999999999999999999999999999999 88999999999 788999998 689999993
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=282.83 Aligned_cols=271 Identities=22% Similarity=0.427 Sum_probs=229.7
Q ss_pred CCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEE
Q 007768 282 NDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 282 ~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~ 361 (590)
..|......-+...+||...|+|++++|| |+++++|+.||.|+|||. ..+-|+.+|..|+..|+.+.|+..|+.++++
T Consensus 333 lVweWqsEsYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~-~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 333 LVWEWQSESYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNT-QSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred EEEEeeccceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEec-cCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 34555666677788899999999999999 999999999999999999 7899999999999999999999999999999
Q ss_pred ecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC-eEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007768 362 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
|.||+|+.||+...+..++|..+......++..++. +.++++|+.|. .|.+|++.+|+++..+.+|.++|.+++|+|.
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 999999999999999999999888877666655543 35777777764 6999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc----cccC
Q 007768 441 NRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK----RFAG 515 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~----~~~~ 515 (590)
+..|+++|.|++|++||+-.. ..+..+ ...+.+..++|+|+|+.|++++.||+|.+||+........+. ...+
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~g 567 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGG 567 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceeeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccc
Confidence 999999999999999998443 334444 356779999999999999999999999999987655442111 1111
Q ss_pred -----------cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE
Q 007768 516 -----------HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 516 -----------~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
.......+.+++|+||.+|++|+....|+||++.++-+++.+
T Consensus 568 R~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 568 RKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 112356788999999999999999999999999877655554
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-32 Score=270.56 Aligned_cols=293 Identities=23% Similarity=0.380 Sum_probs=246.9
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCeeEE--Ee------c----cCCCCeEEEEE
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMR--TY------M----GHSKAVRDISF 351 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~--~~------~----~h~~~V~~l~f 351 (590)
.-+|+..++.+. |..+|.+.+|+|-...+|++|+.|-+.++|++.. ...+.. .+ . ..+..|++++|
T Consensus 165 ~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred ccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence 346777777887 9999999999998555999999999999999953 111111 01 1 12467999999
Q ss_pred ccCCCEEEEEecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC
Q 007768 352 CNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG 430 (590)
Q Consensus 352 spdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~ 430 (590)
+.+|+.|++|++||.+++|+.. |..+.++.. ..++..+.|+-. +++|++++.|+++.+||..+++..+.+.-|..
T Consensus 244 n~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~---G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKK---GTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred cCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCC---CCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 9999999999999999999976 555555544 344556666653 47999999999999999999999999999999
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc
Q 007768 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~ 510 (590)
+-..+.|.. ...|++++.|+.|+|+.+....++..+.. |.+.|.++.|+|.+.+|++++.|++++||+.......
T Consensus 320 ~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~--- 394 (524)
T KOG0273|consen 320 PALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV--- 394 (524)
T ss_pred CccceEEec-CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch---
Confidence 888899974 45899999999999999999999998876 9999999999999999999999999999998765444
Q ss_pred ccccCcccccceEEEEEcCCC---------CEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEe
Q 007768 511 KRFAGHIVAGYACQVNFSPDG---------RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg---------~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
..+..| ...|..+.|+|.| ..|++++.|++|++||+..+.++++|..|..+|.+++|+| ++.+|++|+
T Consensus 395 ~~l~~H--skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs 471 (524)
T KOG0273|consen 395 HDLQAH--SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGS 471 (524)
T ss_pred hhhhhh--ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecC
Confidence 344455 4456678898864 4789999999999999999999999999999999999999 889999999
Q ss_pred CCCcEEEcC
Q 007768 582 WDGLIKYWD 590 (590)
Q Consensus 582 ~Dg~I~iWD 590 (590)
.||.|.||+
T Consensus 472 ~dg~V~iws 480 (524)
T KOG0273|consen 472 LDGCVHIWS 480 (524)
T ss_pred CCCeeEecc
Confidence 999999996
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-32 Score=287.38 Aligned_cols=278 Identities=20% Similarity=0.406 Sum_probs=243.0
Q ss_pred CccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC------------------------------CC
Q 007768 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN------------------------------SG 333 (590)
Q Consensus 284 ~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~------------------------------~~ 333 (590)
..-+|.-+..++..-...++|..|+++ +.+||.|..|..|++|.+.. ..
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 344667777888877889999999999 78999999999999999842 11
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEE
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
...+++.||.++|..+.|+|+.++|++||.|++||+|.+.+..++-.+..+. +++.+.|+|. +.+|++++.|++-+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~---GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR---GYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC---ceEEEecCCCceee
Confidence 2345688999999999999999999999999999999999999999888554 3456777765 48999999999999
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc
Q 007768 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 413 iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~ 492 (590)
+|......+.+.+.+|.+.|.|+.|+|+..++++||.|.+|++||+.++..++.+. +|..+|.+++|+|+|++|++|+.
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeeccc
Confidence 99999999999999999999999999999999999999999999999999988775 69999999999999999999999
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe--------------------
Q 007768 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-------------------- 552 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~-------------------- 552 (590)
||.|.+||+.++..+ ..+.+| .+.+.++.||.+|..|++|+.|.+|++||+..-.
T Consensus 598 d~~I~iWDl~~~~~v---~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLV---KQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENN 672 (707)
T ss_pred CCcEEEEEcCCCcch---hhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCC
Confidence 999999999987655 556677 6789999999999999999999999999985322
Q ss_pred ----EEEEEecCCCcEEEEEEcC
Q 007768 553 ----VFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 553 ----~~~~l~~h~~~V~~v~~sp 571 (590)
++.++.....+|.++.|..
T Consensus 673 ~~~~llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 673 ASSLLLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred CCcceeeeeeecCceEEEEEEec
Confidence 4455555566889999987
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=286.51 Aligned_cols=328 Identities=20% Similarity=0.350 Sum_probs=256.0
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCC-CEEEEEeCC
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYG-HLILSAGMD 321 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g-~~L~sgs~D 321 (590)
+.++.....++++.+++.+++.|...|.| +|--..+.|.|+||.+.|.++.|+|+-. .+|++|..|
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VW-------------di~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVW-------------DIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEE-------------EeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 55667777889999999999999999999 4455678999999999999999999732 358999999
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCC----
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD---- 397 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~---- 397 (590)
++|++||+.....++.++..|.+.|++++|++|+..+++++.|..|.|||+.+.+....+........+.+.+...
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 9999999965666788999999999999999999999999999999999997655444433322222222222211
Q ss_pred --------------------------------------------------------------------------------
Q 007768 398 -------------------------------------------------------------------------------- 397 (590)
Q Consensus 398 -------------------------------------------------------------------------------- 397 (590)
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence
Q ss_pred ----CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE----------
Q 007768 398 ----KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---------- 463 (590)
Q Consensus 398 ----~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~---------- 463 (590)
..+.+++++..+.+++|++.+..+. .+.+|...|.++....+|-+|++||.|+++++|.++....
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 1233444445555555554444333 4557888888888555667888888888888886521100
Q ss_pred --------------------------EEE-------------------eecCCCCceeEEEEcCCCCEEEEEEcCCeEEE
Q 007768 464 --------------------------IKY-------------------ISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 464 --------------------------~~~-------------------~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~i 498 (590)
++. ....|...|.+++++|+.+++|+||.|.+.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 000 01235667899999999999999999999999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEE
Q 007768 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
|++... .....+.|| ...+.++.|+|..+.++++|.|++|+||.+.+..++.+|.+|...|..+.|.. ++..|+
T Consensus 490 W~le~~---~l~~vLsGH--~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qli 563 (775)
T KOG0319|consen 490 WDLEQL---RLLGVLSGH--TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLI 563 (775)
T ss_pred ecccCc---eEEEEeeCC--ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEE
Confidence 999843 334678888 45688999999999999999999999999999999999999999999999998 778999
Q ss_pred EEeCCCcEEEcC
Q 007768 579 TCGWDGLIKYWD 590 (590)
Q Consensus 579 s~g~Dg~I~iWD 590 (590)
||+.||.|+||+
T Consensus 564 S~~adGliKlWn 575 (775)
T KOG0319|consen 564 SAGADGLIKLWN 575 (775)
T ss_pred eccCCCcEEEEe
Confidence 999999999996
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-31 Score=276.51 Aligned_cols=299 Identities=17% Similarity=0.370 Sum_probs=242.7
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe-eEEEeccCCCCeEEEEEccCCCEEEEEec
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-CMRTYMGHSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~~h~~~V~~l~fspdg~~l~s~s~ 363 (590)
-|.|..+.+++.||-..|++|.|+.| .++|++|+.|.+++||.+..... ....+.+|...|..+-|..+...+++.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk 209 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK 209 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec
Confidence 58899999999999999999999999 89999999999999999943222 35678899999999999999999999999
Q ss_pred CCeEEEEECCC-----------------------CcE-----EE----E--ec-CCCcceEEEEecC-------------
Q 007768 364 DKNIKYWDTET-----------------------GQV-----IR----T--FS-TGKIPYVVKLNPD------------- 395 (590)
Q Consensus 364 Dg~I~vWd~~t-----------------------~~~-----~~----~--~~-~~~~~~~~~~~~~------------- 395 (590)
||.|.+|.... ++. .. . +. ......+..+++.
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f 289 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEF 289 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCee
Confidence 99999997761 110 00 0 00 0011111111111
Q ss_pred --------------------------CCCCcEEEEEECC-CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007768 396 --------------------------DDKQNILLAGMSD-KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 396 --------------------------~~~~~~lvsg~~d-g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
+..+..++.|+.. |.+.+|+..+...+...++|...+++++++|||.++++|+
T Consensus 290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence 0112344444443 6777777777777777789999999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007768 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
+||.|+|||...+-++.++.. |...++.+.|+..|+.+++.+.||+|+.||+...... +++.... .....+++..
T Consensus 370 eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~-p~QfscvavD 444 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPE-PIQFSCVAVD 444 (893)
T ss_pred CCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee---eeecCCC-ceeeeEEEEc
Confidence 999999999999999999975 9999999999999999999999999999999765444 3444432 2334578999
Q ss_pred CCCCEEEEEcCCC-cEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 529 PDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs~dg-~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|.|.++++|+.|. .|++|++++|+++-.+.+|.++|.+++|+| .++.|+|++||.+||+||
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWD 506 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEE
Confidence 9999999999876 599999999999999999999999999999 677999999999999997
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=269.30 Aligned_cols=268 Identities=24% Similarity=0.468 Sum_probs=229.1
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
..++|+|+.+. ...+++|..|.+|+|||. ++..+++.+.||++.|.|+.|. .+.|++|+.|.+|+|||+++|++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~-n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDK-NSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEecc-ccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch
Confidence 56789999985 458999999999999999 7889999999999999999995 56999999999999999999999
Q ss_pred EEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc---eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007768 378 IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~---~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
+.++-.+ ...++.+...+ .++++++.|..|.+||+.+.. +...+.+|..+|+.+.|+ .++++++|.|.+|+
T Consensus 270 l~tlihH-ceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 270 LNTLIHH-CEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred hhHHhhh-cceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 9887543 33444444433 689999999999999998753 345667999999999996 56999999999999
Q ss_pred EEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007768 455 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
+|++.+...++.+. +|...|.|+.+ .++++++|+.|++|++||+..+..+ ..+.|| ...|.++.| |.+.|
T Consensus 344 vW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL---RvLeGH--EeLvRciRF--d~krI 413 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL---RVLEGH--EELVRCIRF--DNKRI 413 (499)
T ss_pred EEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEeccccHHH---HHHhch--HHhhhheee--cCcee
Confidence 99999999988875 58888888776 6899999999999999999988765 556777 566778888 67799
Q ss_pred EEEcCCCcEEEEeCCCCe---------EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 535 MSGDGEGKCWFWDWKSCK---------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~---------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++|..||+|++||+.++. ++.++..|++.|..+.|. ...+++++.|.+|-|||
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD---~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD---EFQIISSSHDDTILIWD 475 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec---ceEEEeccCCCeEEEEE
Confidence 999999999999997653 455666799999999994 46899999999999997
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-32 Score=285.61 Aligned_cols=247 Identities=24% Similarity=0.485 Sum_probs=217.5
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc--------------------------------EEEEe
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--------------------------------VIRTF 381 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--------------------------------~~~~~ 381 (590)
.++.++......++|..|++++.+||.|..|..|++|.+...+ ...-.
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 4455555566789999999999999999999999999887321 01111
Q ss_pred cCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 007768 382 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~ 461 (590)
.+..+++.+.|+|+. ++|++++.|+++++|.+.+..++-.+.+|..+|.++.|+|.|-+|+++|.|++.++|.....
T Consensus 449 GH~GPVyg~sFsPd~---rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDR---RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred cCCCceeeeeecccc---cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 223445566777654 68999999999999999999999999999999999999999999999999999999999887
Q ss_pred cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007768 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
.+.+.+. +|...+.|+.|||+..|+++||.|.+|++||+.++..+ ..|.|| .++|.+++|||+|++|++|+.||
T Consensus 526 ~PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V---RiF~GH--~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 526 KPLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV---RIFTGH--KGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred Cchhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEE---EEecCC--CCceEEEEEcCCCceEeecccCC
Confidence 7776665 58999999999999999999999999999999988665 567888 68899999999999999999999
Q ss_pred cEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 542 KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 542 ~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.|.+||+.+++++..+.+|.+.|.++.|+. ++..||+||.|.+|++||
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWD 647 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999999999 788999999999999998
No 29
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-31 Score=248.49 Aligned_cols=284 Identities=19% Similarity=0.309 Sum_probs=244.6
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
.++||..+++.|.++.+ |.+|++|+.|.++.||-. ..++.+-++.||.+.|+|+..+.+.+++++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s-~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYS-LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCC-CcEEEEecCCCCceEEEe-cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 46799999999999999 999999999999999987 6899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCcceEEEEecCCCCCcEEEEEEC-----CCeEEEEeCC-------CCceEEEEcCcCCceeEEEEeCCC
Q 007768 374 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMN-------TKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 374 t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~-----dg~I~iwD~~-------t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
+|+++..+..+.....+.|.+.+ +++++... .+.|.++|++ ..++...+..+...++.+-|.|-+
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~g---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGG---NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCC---cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 99999999999999999999876 45555543 3679999998 456677888888999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
..|++|..||.|.+||++++.........|...|+.+.++++..++++++.|.+-++||..+...+. ++.. ..+
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K---ty~t---e~P 233 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK---TYTT---ERP 233 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE---Eeee---ccc
Confidence 9999999999999999999877777767799999999999999999999999999999998865543 3332 467
Q ss_pred eEEEEEcCCCCEEEEEcCCCc--------------EEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 522 ACQVNFSPDGRFVMSGDGEGK--------------CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~--------------I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
+++.+++|-..+++.|+.... -++|++-..+.+..+++|-++|++++||| ++...++||.||.|+
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVR 312 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEE
Confidence 888999998888777764321 22333333446778899999999999999 677899999999999
Q ss_pred Ec
Q 007768 588 YW 589 (590)
Q Consensus 588 iW 589 (590)
+.
T Consensus 313 ~h 314 (327)
T KOG0643|consen 313 LH 314 (327)
T ss_pred EE
Confidence 73
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.8e-31 Score=245.85 Aligned_cols=256 Identities=24% Similarity=0.384 Sum_probs=221.6
Q ss_pred CccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC--C---eeEEEeccCCCCeEEEEEccCCCEE
Q 007768 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS--G---KCMRTYMGHSKAVRDISFCNDGTKF 358 (590)
Q Consensus 284 ~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~--~---~~~~~~~~h~~~V~~l~fspdg~~l 358 (590)
|.-....-+|.+.-.+..|..++|+|. ++++|+|+.|+...||++... . +..+.+.+|.+.+.|+.|.+| ..|
T Consensus 82 WDs~TtnK~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~i 159 (343)
T KOG0286|consen 82 WDSFTTNKVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHI 159 (343)
T ss_pred EEcccccceeEEecCceeEEEEEECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-Cce
Confidence 344555566777778889999999999 999999999999999999422 1 456789999999999999974 579
Q ss_pred EEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007768 359 LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~ 438 (590)
+++|.|.+..+||+++++.+..|. +|..-++++...+...+.|++|+.|+..++||+|.+.+++.|.+|...|++++|.
T Consensus 160 lT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff 238 (343)
T KOG0286|consen 160 LTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF 238 (343)
T ss_pred EecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEc
Confidence 999999999999999999999996 4444454444444466899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcc
Q 007768 439 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
|+|.-|++|++|+++++||++....+..+.. ....+|++++|+..|++|++|..|.++.+||.-.+... ..+.||
T Consensus 239 P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v---g~L~GH- 314 (343)
T KOG0286|consen 239 PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV---GVLAGH- 314 (343)
T ss_pred cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceE---EEeecc-
Confidence 9999999999999999999999877766643 44568999999999999999999999999998776554 456678
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
...|.++..+|||.-|++|+.|..|+||.
T Consensus 315 -eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 -ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 67799999999999999999999999994
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.2e-30 Score=297.34 Aligned_cols=286 Identities=15% Similarity=0.285 Sum_probs=229.9
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC---CC----eeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCe
Q 007768 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SG----KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 366 (590)
Q Consensus 295 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---~~----~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~ 366 (590)
+.+|...|++++|+|+ +++|++|+.|+.|+||++.. .+ .+...+. +...|.+++|++ ++.+|++++.||.
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 3459999999999999 89999999999999999732 11 1223333 356799999988 5789999999999
Q ss_pred EEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEe-CCCCEE
Q 007768 367 IKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-DSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~-p~~~~l 444 (590)
|+|||+.+++.+..+..+ ..+.++.|++. .+.+|++|+.|+.|++||++++..+..+..+ ..|.++.|+ +++.+|
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSL 633 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEE
Confidence 999999999988887643 34556666653 3468999999999999999999888888754 689999995 568999
Q ss_pred EEEeCCCcEEEEECCCCcE-EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce---eecccccccCccccc
Q 007768 445 VTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAG 520 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~ 520 (590)
++|+.|+.|++||++.... +..+ ..|...|.++.|. ++.+|++++.|+.|++||++... .......+.+| ..
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~ 709 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TN 709 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CC
Confidence 9999999999999987653 3333 4688899999997 67899999999999999997432 11223456666 45
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE-------------ecCCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-------------KCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l-------------~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
.+..++|+|++.+|++|+.||.|++|+.....++..+ ..|...|.+++|+| ++..|++|+.||.|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~ 788 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIK 788 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEE
Confidence 6778999999999999999999999998766544332 22445799999999 778999999999999
Q ss_pred EcC
Q 007768 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
|||
T Consensus 789 i~~ 791 (793)
T PLN00181 789 ILE 791 (793)
T ss_pred EEe
Confidence 997
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-30 Score=240.42 Aligned_cols=286 Identities=20% Similarity=0.391 Sum_probs=232.6
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC--CeeEEEe-ccCCCCeEEEEEccCCCEEEEEecCCe
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS--GKCMRTY-MGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~--~~~~~~~-~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
-.+++++||.+.|..++|+|-.|.+|+||+.|..|+||+.... -.+...+ .+|...|++++|+|.|++|++||+|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 3568899999999999999986779999999999999998421 2333333 369999999999999999999999999
Q ss_pred EEEEECCCC--cEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCC
Q 007768 367 IKYWDTETG--QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 367 I~vWd~~t~--~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~---~~~~~~~~h~~~V~~i~~~p~ 440 (590)
+.||.-..+ +++..+..+ ....+++|+.++ ++|++++.|+.|.||.+..+ ++...+..|..-|..+.|+|.
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG---~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASG---NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCC---CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 999987654 566666554 345677777655 79999999999999999754 577889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC---CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcc
Q 007768 441 NRRFVTSSDDKSLRVWEFGI---PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~---~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
..+|+++|.|.+|++|.-.. -.+...+. .|...|.+++|++.|..|++++.|++|+||-....- . +.
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--------~-~~ 231 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--------S-GM 231 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeeccCc--------c-hh
Confidence 99999999999999998652 24455553 577799999999999999999999999999865321 1 11
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC------eEE-EEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC------KVF-RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~------~~~-~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
....+..+.|. ...|++++.|+.|++|.-... +++ ..-.+|...|++++|.|....+|++||.||.|++|.
T Consensus 232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 232 HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 24556668887 458999999999999976542 122 233578899999999996688999999999999993
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6e-32 Score=248.29 Aligned_cols=283 Identities=23% Similarity=0.407 Sum_probs=252.2
Q ss_pred EEecCCCCCeeEEEEcC--CCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 293 HTWSGHTKGVSAIRFFP--KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp--~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
.+..||+.+|..++|+| ..|-+|++++.||.-.+-+- .++.-+-+|.+|.+.|+...++.+..+-++++.|=+-+||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g-~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG-DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccC-CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 35679999999999986 23889999999999888776 6888999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
|.-+|..+..|...+.+..++|..+. +.|++|+.+..+++||++.. .+..++.+|.+.|..+.|....+.|+++++
T Consensus 87 ~a~tgdelhsf~hkhivk~~af~~ds---~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 87 DAVTGDELHSFEHKHIVKAVAFSQDS---NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhhhheeeeEEecccc---hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 99999999999999999999998765 67999999999999999876 466788999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|++||+||.+++..++.+. ...+|+++.++++|.+|.++ ..+.|.+||..+-..+...+ ....|.+..++|
T Consensus 164 d~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k------~P~nV~SASL~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK------MPCNVESASLHP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc------CccccccccccC
Confidence 9999999999999999885 56789999999999887664 46789999998754443222 235577789999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEE-ecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l-~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+..++++|+.|+.++.||..++..+..+ ++|.++|.|+.|+| ++...++|+.||+|+||
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLW 294 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEE
Confidence 9999999999999999999999999886 89999999999999 78899999999999999
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=4.1e-32 Score=257.28 Aligned_cols=295 Identities=25% Similarity=0.429 Sum_probs=249.5
Q ss_pred CCcceEEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE--------EeccCCCCeEEEEEccCCCE
Q 007768 287 IPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR--------TYMGHSKAVRDISFCNDGTK 357 (590)
Q Consensus 287 ~p~~~i~~l~-gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~--------~~~~h~~~V~~l~fspdg~~ 357 (590)
.|..+.++++ |....+-|..|+|+ |++|++|+.||.|.+|+. .+++..+ .+.-+..+|.|++|+.|...
T Consensus 200 ~Pt~l~r~IKFg~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny-~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 200 YPTQLARSIKFGQKSHVECARFSPD-GQYLVSGSVDGFIEVWNY-TTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred chHHhhhheecccccchhheeeCCC-CceEeeccccceeeeehh-ccchhhhhhhhhhhcceeecccceEEEeecccHHH
Confidence 4555555554 56677899999999 999999999999999998 4555433 34568899999999999999
Q ss_pred EEEEecCCeEEEEECCCCcEEEEecCCCc--ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEE
Q 007768 358 FLTASYDKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 435 (590)
Q Consensus 358 l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i 435 (590)
|++|+.||.|+||.+++|.|++.|...+. +.++.|+.++ ..+++++.|..+++.-+.+|+++.++.+|.+.|+..
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~---SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN---SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc---chhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 99999999999999999999999986554 4455555544 458899999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccc
Q 007768 436 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 436 ~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
.|.++|.++++++.||+|++|+..+..++.++.. +...+|.++-.-|. ...+++|...++|+|.++... .+..+ .
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsf--s 431 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSF--S 431 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeee--c
Confidence 9999999999999999999999999988877754 34557888887775 468889999999999998653 23222 1
Q ss_pred cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 514 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 514 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.|....+...+.++||.|.++++.+.|+.++.|.+.+|++.+++..|...|..++-|| ..++|++-+.||.+++|-
T Consensus 432 SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 2333345566688999999999999999999999999999999999999999999999 688999999999999993
No 35
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.4e-30 Score=252.12 Aligned_cols=289 Identities=20% Similarity=0.400 Sum_probs=240.3
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCC---EEEEEec
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT---KFLTASY 363 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~---~l~s~s~ 363 (590)
.|++..+.+ -|...|.+|... +..|++|+.||.++|||. .|++..++.||.++|.+++|..... .|++++.
T Consensus 94 ~aP~pl~~~-~hdDWVSsv~~~---~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 94 TAPKPLQCF-LHDDWVSSVKGA---SKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCCccccc-cchhhhhhhccc---CceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 344444443 588999999887 569999999999999997 8999999999999999999866433 5999999
Q ss_pred CCeEEEEECCCCcEEEEe-c--CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC-----------------------
Q 007768 364 DKNIKYWDTETGQVIRTF-S--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN----------------------- 417 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~-~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~----------------------- 417 (590)
|.++++|-++.+...... . .+|...+-++.... .+..+++|+.|..|.+|+..
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 999999999877643322 1 14444444444333 23789999999999999932
Q ss_pred --CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCe
Q 007768 418 --TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 495 (590)
Q Consensus 418 --t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~ 495 (590)
++.++..+.+|..+|.++.|++ ...++++|.|.+|+.||+.++..+..+. ...++.++.++|..++|++|+.|..
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred ccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCc
Confidence 1234567789999999999998 6799999999999999999999888774 5668999999999999999999999
Q ss_pred EEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCCe-EEEEEecCCCcEEEEEEcCCC
Q 007768 496 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLE 573 (590)
Q Consensus 496 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~-~~~~l~~h~~~V~~v~~sp~~ 573 (590)
|++||.+++.--.....+.+| ...|..+.|+|... +|++|+.|+++++||+++.+ ++..+.+|...|.++.|..
T Consensus 324 irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-- 399 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-- 399 (423)
T ss_pred eeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--
Confidence 999999987666667788899 45899999999654 57899999999999999988 9999999999999999985
Q ss_pred CCEEEEEeCCCcEEEc
Q 007768 574 QSKVATCGWDGLIKYW 589 (590)
Q Consensus 574 ~~~l~s~g~Dg~I~iW 589 (590)
+.+|++||.|.+|+|+
T Consensus 400 ~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIF 415 (423)
T ss_pred CceEEeccCcceEEEe
Confidence 5689999999999986
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1e-30 Score=271.64 Aligned_cols=290 Identities=20% Similarity=0.325 Sum_probs=245.9
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
-+++..+-|.++.|..++|--...++|+.++..+.++++++ .+..+. .+.||...|.++....+|.+|+||+.|.+++
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~-~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL-PTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEec-CCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 35667778999999999987655799999999999999988 344444 8899999999999666788999999999999
Q ss_pred EEECCCCcEEEEe---cCCCc--ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce-----EE----EEcCcCCceeE
Q 007768 369 YWDTETGQVIRTF---STGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQ----EYDQHLGAVNT 434 (590)
Q Consensus 369 vWd~~t~~~~~~~---~~~~~--~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-----~~----~~~~h~~~V~~ 434 (590)
+|.++.+...... ..++. ..++++ ......+|++++.|++|++|++...+. +. ....|...|+|
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeee--cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 9988554332211 12333 334444 444558999999999999999976211 11 22469999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007768 435 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 435 i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
++++|+...|++||.|++.+||++........+. +|...+.++.|+|..+.++++|.|++|+||.+.+..++ +++.
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl---kT~e 544 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL---KTFE 544 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccceee---eeec
Confidence 9999999999999999999999999777776665 69999999999999999999999999999999987665 7788
Q ss_pred CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 515 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
|| ...|..+.|-.+|..|++++.||-|++|+++++.|+.++.+|...|++++.++ ...+++|||.||.|.+|
T Consensus 545 GH--~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 545 GH--TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP-LLDMFVTGGGDGRIIFW 616 (775)
T ss_pred Cc--cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC-ccceeEecCCCeEEEEe
Confidence 88 56688899999999999999999999999999999999999999999999999 66699999999999999
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-30 Score=250.95 Aligned_cols=282 Identities=18% Similarity=0.372 Sum_probs=245.7
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007768 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I 324 (590)
.......+++.-.+...+..|+..+.| .+...++...++||+..|..|+|+.. |.+|++++.|-.+
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~-------------D~~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVF-------------DTETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSA 174 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEE-------------EccchhhhhhhhccccceeEEEEecC-ccEEEecCCccch
Confidence 334444566666676777788888887 45667788999999999999999998 9999999999999
Q ss_pred EEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEE
Q 007768 325 KIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 325 ~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs 404 (590)
++||......+++.+.+|...|.++.|-|.|.+|++++.|.+|+.|++.+|-++.++..+.. .+-.+.+.. ++.++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~-DGti~As 252 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQ-DGTIIAS 252 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecC-CeeEEEe
Confidence 99999655789999999999999999999999999999999999999999999999976544 444444443 3479999
Q ss_pred EECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC---------------CCEEEEEeCCCcEEEEECCCCcEEEEeec
Q 007768 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---------------NRRFVTSSDDKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 405 g~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~---------------~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~ 469 (590)
++.|.+|++|-+.++++...+..|.-+|-|++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~- 331 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV- 331 (406)
T ss_pred cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-
Confidence 999999999999999999999999999999999763 2589999999999999999999998886
Q ss_pred CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 470 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
+|...|..++|+|.|+||+++..|+++++||+++..++..+. .| ...+++++|+.+..++++|+-|..+++|.-
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~---ah--~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE---AH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC---CC--cceeEEEecCCCCceEEeccccceeeeeec
Confidence 599999999999999999999999999999999987775443 44 466889999999999999999999999964
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.8e-30 Score=268.62 Aligned_cols=284 Identities=20% Similarity=0.331 Sum_probs=246.9
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
.|...+..|..|+|+|. ..+++++-..|.|++||. .-+.++..|..|.++|+.++|+|++.+|+||+.|-.|+||+..
T Consensus 4 kfEskSsRvKglsFHP~-rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhhcccccccceecCCC-CCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 45566788999999999 899999999999999999 7889999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007768 374 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 374 t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+.+|+.++..+- .+..+.|++. -..+++++.|.+|+||+..+++++..+.+|..-|.|..|+|....++++|-|.+
T Consensus 82 ~rrclftL~GHlDYVRt~~FHhe---yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHE---YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred cceehhhhccccceeEEeeccCC---CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence 999998885432 2334444443 268999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCC----------------------------CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007768 453 LRVWEFGI----------------------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 453 I~iwdl~~----------------------------~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~ 504 (590)
|||||+.. ...++.+..+|...|.-++|||.-.+|++|+.|..|++|.+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 99999841 12356667789999999999999999999999999999998654
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
. .....+..|| ...|.++-|+|...+|++.+.|++|++||+...+.+++++...+.-+.++-|| ..+++++|-+.|
T Consensus 239 K-aWEvDtcrgH--~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 239 K-AWEVDTCRGH--YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLFAAGHDSG 314 (1202)
T ss_pred c-ceeehhhhcc--cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-CcceeeeecCCc
Confidence 3 3445677888 46688999999999999999999999999999999999998788899999999 676666655444
Q ss_pred cE
Q 007768 585 LI 586 (590)
Q Consensus 585 ~I 586 (590)
.+
T Consensus 315 m~ 316 (1202)
T KOG0292|consen 315 MI 316 (1202)
T ss_pred eE
Confidence 43
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-29 Score=258.40 Aligned_cols=286 Identities=20% Similarity=0.352 Sum_probs=256.9
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
..+++..|+..|.||.|+|. ..+++++-.+|.|.||+. ++...++.+.-..-+|++..|-+.-+++++|+.|..|+||
T Consensus 5 ~krk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWny-etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNY-ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhhHhhccCCceeeeecCCC-CceEEEeeecCeeEEEec-ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 34566779999999999999 899999999999999999 7888999999889999999999999999999999999999
Q ss_pred ECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC-CCCEEEEE
Q 007768 371 DTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVTS 447 (590)
Q Consensus 371 d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p-~~~~l~s~ 447 (590)
+..+++.+..|..+ ..+.++..+|.. .++++++.|-.|++||...+ .+.+++.+|..-|.+++|+| |.+.|+++
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 99999999999764 456678888765 58999999999999999876 78899999999999999999 46789999
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCC--CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007768 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT--NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g--~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
|-|++|+||.+..+.+..++. +|...|.|+.+-+.| .+|++|+.|..|+|||..+..++ .++.|| ...|..+
T Consensus 160 sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV---~TLeGH--t~Nvs~v 233 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV---QTLEGH--TNNVSFV 233 (794)
T ss_pred eccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH---HHhhcc--cccceEE
Confidence 999999999999999988886 799999999998865 59999999999999999987665 667788 4558889
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 526 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
+|+|.-.+|++|+.||+|+||+..+-++..++.-.-..|+|++-.+ +...++.|.+.|.|.|
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 9999999999999999999999999999999988888999999998 6677888888888754
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=263.70 Aligned_cols=316 Identities=24% Similarity=0.421 Sum_probs=240.6
Q ss_pred CcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC
Q 007768 254 DKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG 333 (590)
Q Consensus 254 ~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~ 333 (590)
+...+++-+-.|..+|.|-. .......+|.||...|+++.|... |.+|+|||.|+.|.+||+ -..
T Consensus 75 ~d~l~lAVGYaDGsVqif~~-------------~s~~~~~tfngHK~AVt~l~fd~~-G~rlaSGskDt~IIvwDl-V~E 139 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSL-------------ESEEILITFNGHKAAVTTLKFDKI-GTRLASGSKDTDIIVWDL-VGE 139 (888)
T ss_pred CCcceEEEEecCceEEeecc-------------CCCceeeeecccccceEEEEEccc-CceEeecCCCccEEEEEe-ccc
Confidence 44445566677888998833 333567789999999999999999 999999999999999999 455
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC------------------------------
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST------------------------------ 383 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~------------------------------ 383 (590)
.-+..+.||...|+.+-|..+.++++++|.|+.|++||+++..|..+...
T Consensus 140 ~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~ 219 (888)
T KOG0306|consen 140 EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELA 219 (888)
T ss_pred eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEee
Confidence 56667888888888888888778888888888888888774332221000
Q ss_pred --------------------------------------------------------------------------------
Q 007768 384 -------------------------------------------------------------------------------- 383 (590)
Q Consensus 384 -------------------------------------------------------------------------------- 383 (590)
T Consensus 220 ~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~ 299 (888)
T KOG0306|consen 220 FEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEEN 299 (888)
T ss_pred cccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccc
Confidence
Q ss_pred --------------------CCcceEEEEecCCC----------------------------------------------
Q 007768 384 --------------------GKIPYVVKLNPDDD---------------------------------------------- 397 (590)
Q Consensus 384 --------------------~~~~~~~~~~~~~~---------------------------------------------- 397 (590)
......+.+.+.+.
T Consensus 300 ~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl 379 (888)
T KOG0306|consen 300 EDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSL 379 (888)
T ss_pred ccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEE
Confidence 00000000000000
Q ss_pred ---CCcEEEEEECCCeEEEEeCCCCceEE----------------------------------------EEcCcCCceeE
Q 007768 398 ---KQNILLAGMSDKKIVQWDMNTKEITQ----------------------------------------EYDQHLGAVNT 434 (590)
Q Consensus 398 ---~~~~lvsg~~dg~I~iwD~~t~~~~~----------------------------------------~~~~h~~~V~~ 434 (590)
..+.++..+..+.|.+|+..+.++++ ++..|.+.|.+
T Consensus 380 ~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWs 459 (888)
T KOG0306|consen 380 CVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWS 459 (888)
T ss_pred EeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceee
Confidence 01223344445667777666555443 33469999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCc-----EEEEee------cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 435 ITFVDSNRRFVTSSDDKSLRVWEFGIPV-----VIKYIS------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 435 i~~~p~~~~l~s~s~Dg~I~iwdl~~~~-----~~~~~~------~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
|+.+|++..+++||.|.+|++||+.-.. ..+.+. ......|.|+.++|+|++|+++-.|++|+||-+.+
T Consensus 460 i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc
Confidence 9999999999999999999999973211 111111 12345799999999999999999999999999987
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCC
Q 007768 504 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
. .-+..+.|| .-+|.++.+|||++++++|+.|.+|+||-+.-|.|.+.+-+|...|.++.|.| ...++.|||.|
T Consensus 540 l---KFflsLYGH--kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD 613 (888)
T KOG0306|consen 540 L---KFFLSLYGH--KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKD 613 (888)
T ss_pred e---eeeeeeccc--ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCc
Confidence 4 334667888 56799999999999999999999999999999999999999999999999999 78899999999
Q ss_pred CcEEEcC
Q 007768 584 GLIKYWD 590 (590)
Q Consensus 584 g~I~iWD 590 (590)
+.|+-||
T Consensus 614 ~kvKqWD 620 (888)
T KOG0306|consen 614 GKVKQWD 620 (888)
T ss_pred ceEEeec
Confidence 9999997
No 41
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=8.8e-31 Score=255.98 Aligned_cols=294 Identities=21% Similarity=0.362 Sum_probs=248.8
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe--eEEEeccCCCCeEEEEEccCCCEEEEEe
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s 362 (590)
..+|.+....+..|.+.|..+.|-++ ...|++|+.|..|++|++ ...+ .+.++.|..+.|+++.|.+++.++++++
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v-~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNV-LGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred cccchhhhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhc-ccchhhhhhhhhccCCCcceeeecCCCceEEeec
Confidence 45788889999999999999999998 789999999999999999 3444 6778888999999999999999999999
Q ss_pred cCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC
Q 007768 363 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
.|+.+++|++...+...++.. |...+.+....-.. ..+++|+.|.+|++||+....+..++. ....++.|... ..
T Consensus 239 ~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~ 313 (459)
T KOG0288|consen 239 NDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--IS 313 (459)
T ss_pred CCCceeeeeccchhhhhhhcc-cccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ce
Confidence 999999999999999998877 44444444333222 239999999999999999988877664 44566777775 56
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007768 443 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
.+++|-.|+.|++||++...+...+ +..+.|+++..++++..|.+++.|.++.++|+++........ -.+.......
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDw 390 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKTRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDW 390 (459)
T ss_pred eeeecccccceEEEeccCCceeeEe--ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee-cccccccccc
Confidence 7899999999999999999888877 455699999999999999999999999999999865544332 2233334457
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCC--cEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+| .++.|++++.++.+.+|
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 7899999999999999999999999999999999986554 499999999 78899999999999999
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=232.64 Aligned_cols=277 Identities=21% Similarity=0.318 Sum_probs=241.5
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeE--EEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEE
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM--RTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKY 369 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~v 369 (590)
+.+++|.+.|.+|+|+-+ |..|++|+.|+++.+|++. ..+.. ..+.+|.+.|-.++|+| +..+|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e-~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLE-RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEec-chhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 567799999999999999 9999999999999999994 33333 24678999999999998 6789999999999999
Q ss_pred EECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
||++.++++..+........+.|.|++ .+++++..|..|.+.|.++.+.+...+ ....++-++|+-++.+|+....
T Consensus 92 wd~r~~k~~~~i~~~~eni~i~wsp~g---~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENINITWSPDG---EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred EEeccCcEEEEeeccCcceEEEEcCCC---CEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecC
Confidence 999999999999988888889999876 589999999999999999988777664 4567888999988888888888
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
.|.|.|..+...+++..+. .|.....||.|+|+|++||+|+.|..+.+||+...-+...+. .+ .-+|..+.||.
T Consensus 168 lG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---Rl--dwpVRTlSFS~ 241 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RL--DWPVRTLSFSH 241 (313)
T ss_pred CceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cc--cCceEEEEecc
Confidence 8999999998888888775 588889999999999999999999999999998754443333 33 45688899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCC
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
||++||+|+.|..|-|=++++|..+..++ +.++...++||| ...+||-++.|
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 99999999999999999999999999998 678889999999 67788877764
No 43
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=3e-29 Score=250.90 Aligned_cols=298 Identities=20% Similarity=0.351 Sum_probs=233.8
Q ss_pred cCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeE---EEec-cCCCCeEEEEEccCCCEEEEE
Q 007768 286 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM---RTYM-GHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 286 ~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~---~~~~-~h~~~V~~l~fspdg~~l~s~ 361 (590)
.+|..+--.|++|+..|+++++.|. |-.|++|+.|-+|++||+..-.... +.+. .....|+++.|++.|..|++.
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE
Confidence 4666777789999999999999999 9999999999999999994322222 2222 345679999999999999999
Q ss_pred ecCCeEEEEECCCCcEEEEec-----------CCCcce--EEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEc-
Q 007768 362 SYDKNIKYWDTETGQVIRTFS-----------TGKIPY--VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYD- 426 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~- 426 (590)
+.....+|+|-.....+.... .+|... +.+|+|. ....|++++.||++++||+... +..+.+.
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~--~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD--NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC--cccceEEecCCCcEEEEecCCchhheeEEee
Confidence 999999999966544433322 234333 4555554 4578999999999999999764 3334432
Q ss_pred ----CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC--cEEEEeecCCCC--ceeEEEEcCCCCEEEEEEcCCeEEE
Q 007768 427 ----QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMH--SMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 427 ----~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~~~--~i~~i~~sp~g~~la~~s~dg~I~i 498 (590)
+..-++++++|++++++|++|+.||+|.+|+.+.. .+...+...|.. .|+||+|+++|++|++-+.|+.+++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 23347899999999999999999999999998543 334445556766 8999999999999999999999999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCC
Q 007768 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 572 (590)
||++..... +....+....-.-+.++|||+.++|++|.+ .|.++|||..+...+.++......|..+.|||
T Consensus 391 WDLrq~kkp--L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp- 467 (641)
T KOG0772|consen 391 WDLRQFKKP--LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP- 467 (641)
T ss_pred eeccccccc--hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-
Confidence 999875432 233334333444567899999999999864 57899999999999999988888999999999
Q ss_pred CCCEEEEEeCCCcEEEc
Q 007768 573 EQSKVATCGWDGLIKYW 589 (590)
Q Consensus 573 ~~~~l~s~g~Dg~I~iW 589 (590)
.-+.|+.|+.||+++||
T Consensus 468 kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred hhhheeeecCCCceEEE
Confidence 66678888889999885
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=8.4e-30 Score=244.75 Aligned_cols=247 Identities=21% Similarity=0.362 Sum_probs=220.2
Q ss_pred CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCe
Q 007768 332 SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 332 ~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
..++.+.+.+|.+.|+|+++.|...+|++|+.|++|+|||+.+|+...++..+ ....-++++... .++++++.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH---pYlFs~gedk~ 216 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH---PYLFSAGEDKQ 216 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC---ceEEEecCCCe
Confidence 44677888999999999999999999999999999999999999999888643 334455665543 68999999999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEE
Q 007768 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~ 490 (590)
|+.||+...+.++.+.+|...|.|+..+|.-..|++|+.|.+++|||+++...+..+. +|..+|.++.+.|-...+++|
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCCceEEe
Confidence 9999999999999999999999999999999999999999999999999999988885 599999999999999999999
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEc
Q 007768 491 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~s 570 (590)
+.|++|++||++.+.... .+..| ...+.+++.+|....+++++.| .|+-|++..|..+..+.+|...|.+++..
T Consensus 296 S~D~tvrlWDl~agkt~~---tlt~h--kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMI---TLTHH--KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred cCCceEEEeeeccCceeE---eeecc--cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec
Confidence 999999999999876553 33444 4668899999999999999887 69999999999999999999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEcC
Q 007768 571 PLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 571 p~~~~~l~s~g~Dg~I~iWD 590 (590)
. + .++++|++.|.|.+||
T Consensus 370 s-D-~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 370 S-D-GVLVSGGDNGSIMFWD 387 (460)
T ss_pred c-C-ceEEEcCCceEEEEEe
Confidence 6 3 4899999999999997
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=4.9e-28 Score=243.07 Aligned_cols=295 Identities=15% Similarity=0.262 Sum_probs=241.9
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCee-EEEeccCCCCeEEEEEccCCCEEEEEecC--C
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC-MRTYMGHSKAVRDISFCNDGTKFLTASYD--K 365 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~-~~~~~~h~~~V~~l~fspdg~~l~s~s~D--g 365 (590)
...+..+..|...++-.+|+|. |.++++|...|+|+|||....... ...++...++|.+|+|+.++++|+..+.. +
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred ccceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence 3446788899999999999999 899999999999999999654443 34577788999999999999999988753 3
Q ss_pred eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007768 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
..+++-.++|..+..+..+ ...+..+...+.....+++|+.|+.|.+|+-.-.+....+..|..-|+|+.|+|+|.+|+
T Consensus 128 fg~~F~~DSG~SvGei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred eeEEEEecCCCccceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 3334434456666666443 333333333345558899999999999999887788888889999999999999999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEee--cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceE
Q 007768 446 TSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
+++.||.|.+||-.++..+..+. .+|.+.|.+++|+|++..|++++.|.+++|||+.+......+.. .... .....
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~-~~~v-~dqqv 284 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM-GSTV-EDQQV 284 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec-CCch-hceEE
Confidence 99999999999999999888876 37999999999999999999999999999999988765544332 2221 22233
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+-|. ...|++.+.+|.|.+++...+.++..+.+|...|+++..+| ++.+|++|+.||.|.-||
T Consensus 285 G~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 285 GCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEe
Confidence 35554 56899999999999999999999999999999999999999 668999999999999997
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=238.08 Aligned_cols=294 Identities=20% Similarity=0.332 Sum_probs=244.8
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC-----------------CCeeEEEeccCCCCeEEEEEcc
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-----------------SGKCMRTYMGHSKAVRDISFCN 353 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-----------------~~~~~~~~~~h~~~V~~l~fsp 353 (590)
....+..|..++.+.+|+|+ |.++++|+.|..|+|.|+.. ....++++..|...|+++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34567799999999999999 99999999999999999941 1257889999999999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEE---EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE---cC
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVI---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQ 427 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~---~~ 427 (590)
....|++|+.|++|+++|+...... +.|...+...++.|+|.+ .++++|.....+++||+.+-++...- .+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG---efllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG---EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC---ceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999765443 345556777888888876 58999999999999999998765543 46
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC-ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007768 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~ 506 (590)
|.+.|+++.+++.+++.+++|.||.|+|||--+.+++..+...|.+ .|.+..|..+++|+++.+.|..+++|.+.++..
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 9999999999999999999999999999999999999888877765 588899999999999999999999999998876
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCCCeEEEEEe-cCCCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
+.....-........-+...|.....|++.-+. .+.++-||.++...+..+. +|.+.|..+.-+| ...-++|||.|-
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDF 418 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccc
Confidence 643322100011122334667777778877664 5789999999987766664 7999999999999 677899999999
Q ss_pred cEEEc
Q 007768 585 LIKYW 589 (590)
Q Consensus 585 ~I~iW 589 (590)
.+++|
T Consensus 419 raRFW 423 (430)
T KOG0640|consen 419 RARFW 423 (430)
T ss_pred eeeee
Confidence 99999
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-29 Score=258.51 Aligned_cols=245 Identities=22% Similarity=0.438 Sum_probs=220.5
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc-eEEEEecCCCCCcEEEEEECCCeEEEEe
Q 007768 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD 415 (590)
+++..|+..|.++.|+|...+++++-++|.|.||+.++...++.|.....+ ....|.. ..+.+++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia---RknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA---RKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee---ccceEEEecCCceEEEEe
Confidence 456668999999999999999999999999999999999999999765544 4455554 237899999999999999
Q ss_pred CCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC-CCEEEEEEcCC
Q 007768 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDN 494 (590)
Q Consensus 416 ~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~la~~s~dg 494 (590)
..+++.+..+..|..-|.||+.+|...+++++|+|-+|++||+...-.......+|.+.|.+++|.|. .+.|++++.|+
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 99999999999999999999999999999999999999999999988888888899999999999995 67999999999
Q ss_pred eEEEEEcCCceeecccccccCcccccceEEEEEcCCC--CEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCC
Q 007768 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg--~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 572 (590)
+|++|.+.+.... .++.+| ...|.+++|-+.| .+|++|+.|..|+|||.++..|++++.+|...|..+.|||
T Consensus 164 TVKVWslgs~~~n---fTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp- 237 (794)
T KOG0276|consen 164 TVKVWSLGSPHPN---FTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP- 237 (794)
T ss_pred cEEEEEcCCCCCc---eeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-
Confidence 9999999775433 566788 4568889997744 6999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEcC
Q 007768 573 EQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 573 ~~~~l~s~g~Dg~I~iWD 590 (590)
.-.+++|||.||+||||+
T Consensus 238 ~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWN 255 (794)
T ss_pred CCcEEEEecCCccEEEec
Confidence 788999999999999995
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3e-28 Score=261.29 Aligned_cols=280 Identities=23% Similarity=0.442 Sum_probs=232.9
Q ss_pred ccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecC
Q 007768 251 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV 330 (590)
Q Consensus 251 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~ 330 (590)
.+.....+......|..++.|...... + .+.+.+.+|...|++++|+|+ +.++++|+.|++|+|||+.
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~-------~----~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIK-------S----NLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeeccccc-------c----hhhccccccccceeeeEECCC-CcEEEEecCCceEEEeecc
Confidence 445555556777778888888662211 0 466777899999999999999 8999999999999999996
Q ss_pred CCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCc-ceEEEEecCCCCCcEEEEEECCC
Q 007768 331 NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDK 409 (590)
Q Consensus 331 ~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg 409 (590)
..+.+++++.+|...|++++|+|+|+++++|+.|++|+|||+++++++..+..+.. +..+.|.+++ ++|++++.|+
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~---~~l~s~s~d~ 310 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG---NLLVSASYDG 310 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC---CEEEEcCCCc
Confidence 66799999999999999999999999999999999999999999999999987664 4456666544 6899999999
Q ss_pred eEEEEeCCCCc--eEEEEcCcCCc--eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC--ceeEEEEcCC
Q 007768 410 KIVQWDMNTKE--ITQEYDQHLGA--VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--SMPSISLHPN 483 (590)
Q Consensus 410 ~I~iwD~~t~~--~~~~~~~h~~~--V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~--~i~~i~~sp~ 483 (590)
.|++||+.++. ++..+..+... ++++.|+|++.+|++++.|+.+++||++.............. .+.+...++.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 99999999998 56677666555 999999999999999999999999999998888777653333 4555566789
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCC
Q 007768 484 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWK 549 (590)
Q Consensus 484 g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~ 549 (590)
+.++++++.|+.|.+|++.+...+ ..+.+|. ...+..+.++|..+++++++ .|+.|++|...
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~---~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGIL---QRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchh---hhhcCCC-CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999999999875444 4455564 46678899999999999998 78889999753
No 49
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.8e-30 Score=247.00 Aligned_cols=288 Identities=18% Similarity=0.326 Sum_probs=237.5
Q ss_pred cCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 286 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 286 ~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+.+..+..|.||..+|.|++=+|..-..++||+.||.|+|||+ ....+++++..|.+.|..|++.. ..+++++.|.
T Consensus 53 ~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnl-sqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 53 VFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNL-SQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred HhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEeh-hhhhhhheeecccCceeeEEecc--cceEEecCCc
Confidence 34556677889999999999999996688999999999999999 78899999999999999999986 6899999999
Q ss_pred eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-EE
Q 007768 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RF 444 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~-~l 444 (590)
+|+.|-++. ..++++.......-+..+... +.+++++ -.|.|||..-..+++.+.--...|.++.|+|... .|
T Consensus 130 tvK~wk~~~-~p~~tilg~s~~~gIdh~~~~---~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 130 TVKQWKIDG-PPLHTILGKSVYLGIDHHRKN---SVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL 203 (433)
T ss_pred ceeeeeccC-Ccceeeecccccccccccccc---ccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence 999999875 466666554444444443322 4566665 4699999998889999887888999999999765 56
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007768 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
++++.|++|.|||++...+++.+.. ...-..|+|+|.+-.|++++.|..++.||++... .....+.+| ...|.+
T Consensus 204 as~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dh--vsAV~d 277 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDH--VSAVMD 277 (433)
T ss_pred eeeccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhc--ccchhhccc--ceeEEE
Confidence 6777999999999999998887753 3456789999988889999999999999998653 345677788 456899
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec-CCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
++|||-|+-+++|+.|.+|+||.+..+.....+.. -...|.++.|+. +..++++||.|+.|++|
T Consensus 278 VdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 278 VDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLW 342 (433)
T ss_pred eccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeee
Confidence 99999999999999999999999887654333211 124699999999 78899999999999999
No 50
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.6e-30 Score=252.26 Aligned_cols=254 Identities=19% Similarity=0.335 Sum_probs=214.4
Q ss_pred CccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCC-CCeEEEEEccCCCEEEEEe
Q 007768 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 284 ~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s 362 (590)
|+-.....-..++.|..+|.++.|+++ +.+++||+.+|.|++|+. ....+..+..|. ..|++++|+|+...|++|+
T Consensus 123 WNg~~fnFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqp--nmnnVk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 123 WNGTSFNFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQP--NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred ecCceeeHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEeccc--chhhhHHhhHhhhhhhheeccCCCCceeEEec
Confidence 333333334456799999999999999 999999999999999997 445555555554 9999999999999999999
Q ss_pred cCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 363 YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
.||+|+|||....+..+.+..+ -.+.++.|+|.. .++++|+.|..|++||.+++.++.++..|...|..+.|++++
T Consensus 200 dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k---gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~ 276 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK---GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG 276 (464)
T ss_pred CCCeEEEEeccCCchhheeccCCCCcceeccCCcc---ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC
Confidence 9999999999888777776543 346678888754 589999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
++|+++|.|..++++|+++.+.+..+. .|...+++++|+|- ..+|.+|+.||.|..|.+.....+. ..-.+| ..
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~--~i~~AH--d~ 351 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG--EIPPAH--DG 351 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEecccccccc--CCCccc--cc
Confidence 999999999999999999776666554 58899999999995 5789999999999999987433332 122233 67
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 521 YACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.|.+++|+|-|.+|++|+.|.++++|.-
T Consensus 352 ~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ceeeeeccccceeEeecCCCcceeeecc
Confidence 8999999999999999999999999964
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8e-29 Score=262.46 Aligned_cols=253 Identities=22% Similarity=0.431 Sum_probs=212.0
Q ss_pred ceEEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC-------------------------------------
Q 007768 290 RLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN------------------------------------- 331 (590)
Q Consensus 290 ~~i~~l~-gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~------------------------------------- 331 (590)
...+.+. .|.+.|.++.|+++ |++||+||.||.|+||.+.+
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred EEeeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3455666 89999999999999 99999999999999998843
Q ss_pred ----------------------CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceE
Q 007768 332 ----------------------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 389 (590)
Q Consensus 332 ----------------------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~ 389 (590)
..++++.|.||.+.|.+|.|+.+ ++|++++.|.+|+||++....|++.|.+...++|
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 01234556799999999999975 5899999999999999999999999999999999
Q ss_pred EEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec
Q 007768 390 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 390 ~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~ 469 (590)
++|+|.++ ++|++|+-||+|+||++...+.+.-...+ .-|++++|.|+|+..++|+.+|.+++|+....+.......
T Consensus 415 VaFnPvDD--ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDD--RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEecccCC--CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99999876 79999999999999999988777665544 7899999999999999999999999999987665544321
Q ss_pred -------CCCCceeEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007768 470 -------PHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 470 -------~~~~~i~~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
.....|+.+.+.|.. ..+++.+.|..|+|||.++...+.+ |+|......-....|+.||++|++++.|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K---fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK---FKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh---hcccccCCcceeeeEccCCCEEEEeecCc
Confidence 112379999999854 3577889999999999987666544 44444444555689999999999999999
Q ss_pred cEEEEeCCC
Q 007768 542 KCWFWDWKS 550 (590)
Q Consensus 542 ~I~iwd~~t 550 (590)
.|+||+...
T Consensus 569 ~VYiW~~~~ 577 (712)
T KOG0283|consen 569 WVYIWKNDS 577 (712)
T ss_pred eEEEEeCCC
Confidence 999999744
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.5e-29 Score=225.86 Aligned_cols=243 Identities=23% Similarity=0.407 Sum_probs=207.5
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEE
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
+.++.+.+|.++|+.+.|+-+|++.++|+.|++|++|+...|.+++++..+ +.+.-.....++ ..|++|+.|..|.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn---skf~s~GgDk~v~ 84 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN---SKFASCGGDKAVQ 84 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc---cccccCCCCceEE
Confidence 456778899999999999999999999999999999999999999999754 344445555544 4599999999999
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC--cEEEEeecCCCCceeEEEEcCCCCEEEEE
Q 007768 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 413 iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~g~~la~~ 490 (590)
+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++. .+++.+. .....|.++.+. +..|++|
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999999999999999999999999999764 4555554 356678887774 6789999
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcE--EEEE
Q 007768 491 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC--IGCE 568 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V--~~v~ 568 (590)
+.||+++.||++.+.... .+ ...+|++++|++||+.+++++.|++|++.|-.+|+++..+++|...- ..++
T Consensus 162 S~DGtvRtydiR~G~l~s---Dy----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSS---DY----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred ccCCcEEEEEeecceeeh---hh----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 999999999999875442 22 24568899999999999999999999999999999999999998643 4456
Q ss_pred EcCCCCCEEEEEeCCCcEEEcC
Q 007768 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++. ....+++|+.||.|.+||
T Consensus 235 l~q-sdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 235 LNQ-SDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ecc-cceeEEeccCCceEEEEE
Confidence 665 566899999999999997
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.7e-28 Score=254.67 Aligned_cols=317 Identities=19% Similarity=0.336 Sum_probs=244.0
Q ss_pred CCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 007768 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~ 325 (590)
..++.+++++.++.-+.-.-..++ -|.|--..+++.|..|.++|..|+|+|. +.+++|||.|-.|+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQ-------------lWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQ-------------LWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIK 76 (1202)
T ss_pred cccceecCCCCCEEEEeecCceee-------------eehhhhhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEE
Confidence 455667777766444444333444 4577777899999999999999999999 99999999999999
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEE
Q 007768 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvs 404 (590)
||+. ...+|+.++.||-..|+.+.|++.-.+|+|+|.|.+|+||++.+++++..+..+ |.+.|..|+|.. .++++
T Consensus 77 VWnY-k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE---DlIVS 152 (1202)
T KOG0292|consen 77 VWNY-KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE---DLIVS 152 (1202)
T ss_pred EEec-ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc---ceEEE
Confidence 9999 789999999999999999999999999999999999999999999999988643 334455555544 58999
Q ss_pred EECCCeEEEEeCCCCc-----------------------------eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007768 405 GMSDKKIVQWDMNTKE-----------------------------ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 405 g~~dg~I~iwD~~t~~-----------------------------~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
++-|.+|++||+..-+ ..+.+.+|...|+-++|+|.-..|++|++|..|++
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence 9999999999985210 12346789999999999999999999999999999
Q ss_pred EECCCCcEE-EEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007768 456 WEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 456 wdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
|.+...+.. .....+|...|.++-|||..+++++.+.|+.|+|||+..+..+..+.. . ......++.+|..+++
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr---e--ndRFW~laahP~lNLf 307 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR---E--NDRFWILAAHPELNLF 307 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec---c--CCeEEEEEecCCccee
Confidence 998755432 222347999999999999999999999999999999987766544332 2 3445668888988888
Q ss_pred EEEcCCCc--------------------------EEEEeCCCCe--EEEEEecC---CCcEEEEEEcCCCCCEEEEEeCC
Q 007768 535 MSGDGEGK--------------------------CWFWDWKSCK--VFRTLKCH---EGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 535 ~sgs~dg~--------------------------I~iwd~~t~~--~~~~l~~h---~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
++|-..|. |+.+|+.+.+ .+..++.. -.++.++.++|..+..|++...|
T Consensus 308 AAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~ 387 (1202)
T KOG0292|consen 308 AAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLD 387 (1202)
T ss_pred eeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccC
Confidence 88765553 2222333321 12222222 24678899999666666665555
Q ss_pred Cc
Q 007768 584 GL 585 (590)
Q Consensus 584 g~ 585 (590)
+.
T Consensus 388 n~ 389 (1202)
T KOG0292|consen 388 NG 389 (1202)
T ss_pred CC
Confidence 43
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.9e-27 Score=222.31 Aligned_cols=286 Identities=17% Similarity=0.327 Sum_probs=234.6
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec--CCeEE
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY--DKNIK 368 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~--Dg~I~ 368 (590)
..+.|..-.+.|++|.|+++ |.+|++++.|.+++|||. ..++.++++..+.-.|..++|....+.++.++. |.+|+
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~-~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDS-LSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEc-CCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 34455667788999999999 999999999999999999 789999999999889999999988888888777 88999
Q ss_pred EEECCCCcEEEEecCCCc-ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007768 369 YWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
..++.+.+.++.|..++. +..++.+|-+ ..+++++.|++|++||++..++...+.. ..-..++|.|+|-+||++
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALA 158 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEe
Confidence 999999999999976543 4466666655 5799999999999999998877766643 334457999999999999
Q ss_pred eCCCcEEEEECCCC--cE--EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc-ce
Q 007768 448 SDDKSLRVWEFGIP--VV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-YA 522 (590)
Q Consensus 448 s~Dg~I~iwdl~~~--~~--~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v 522 (590)
.....|++||++.- .+ ...+..+.....+.|.|+|+|++|+.++..+.+++.|.-++..+... .++.... .-
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf---s~~~~~~~~~ 235 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF---SGYPNAGNLP 235 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE---eeccCCCCcc
Confidence 98889999999763 22 22333345677899999999999999999999999998887755433 3333222 22
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec-CCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
...+|+||++++++|+.||+|.+|++.++..+..+.+ +.+++.++.|+| ...+++|+ +..+.+|
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFVSA--SSNLVFW 300 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeeeec--CceEEEE
Confidence 4688999999999999999999999999999999998 788999999999 44455555 4567777
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=2.7e-28 Score=230.08 Aligned_cols=283 Identities=22% Similarity=0.367 Sum_probs=241.0
Q ss_pred hccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007768 241 KGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~ 320 (590)
.++.+.+...++.+..++.++++.|.++=+|..-. -.+...+++||++.|..+.|.++ +..|++++.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g------------dceN~~~lkgHsgAVM~l~~~~d-~s~i~S~gt 110 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG------------DCENFWVLKGHSGAVMELHGMRD-GSHILSCGT 110 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccc------------cccceeeeccccceeEeeeeccC-CCEEEEecC
Confidence 35666777788899999999999999999995422 22344577899999999999999 999999999
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCC
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 399 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (590)
|.+|+.||+ .++++++.+++|...|+.+.-+.-| .++.+++.||+++|||+++...++++........+.|.-..+
T Consensus 111 Dk~v~~wD~-~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~-- 187 (338)
T KOG0265|consen 111 DKTVRGWDA-ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD-- 187 (338)
T ss_pred CceEEEEec-ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccc--
Confidence 999999999 7999999999999999999955545 456688889999999999999999998877778888876554
Q ss_pred cEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC----cEEEEeecCCCC--
Q 007768 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP----VVIKYISEPHMH-- 473 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~----~~~~~~~~~~~~-- 473 (590)
.+++|+-|+.|++||++.+.....+.+|..+|+.|..+++|.++++-+.|.++++||++-. .++..+. ++.+
T Consensus 188 -qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~-g~~hnf 265 (338)
T KOG0265|consen 188 -QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ-GHIHNF 265 (338)
T ss_pred -ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee-cchhhh
Confidence 5999999999999999999999999999999999999999999999999999999999743 2233332 2322
Q ss_pred --ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007768 474 --SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 474 --~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
....++|+|++..+.+|+.|..+++||......+ ..+.|| .+.|.+++|+|...+|.+++.|.+|++=
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l---yklpGh--~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL---YKLPGH--YGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEE---EEcCCc--ceeEEEeeecCCCcEEEEeccCceeEee
Confidence 3457899999999999999999999998775443 456777 6789999999999999999999999873
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=221.41 Aligned_cols=282 Identities=21% Similarity=0.350 Sum_probs=223.5
Q ss_pred CCCCCcccCCc-ceeecccccccccceeecCCccccccCCCccCCcceEEEe-cCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007768 245 GGEKGEHVEDK-STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW-SGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 245 ~~~~~~~~~~~-s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l-~gH~~~V~~l~~sp~~g~~L~sgs~Dg 322 (590)
+.....+.++. ..++++++.|..+|.|-....+ ...+...+ .+|+..|.+++|+|. |++|++||.|.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~----------s~~ck~vld~~hkrsVRsvAwsp~-g~~La~aSFD~ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD----------SWTCKTVLDDGHKRSVRSVAWSPH-GRYLASASFDA 83 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCC----------cEEEEEeccccchheeeeeeecCC-CcEEEEeeccc
Confidence 33444555555 5678999999999999654321 12344445 379999999999999 89999999999
Q ss_pred cEEEEecC-CCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC---cEEEEecCC-CcceEEEEecCCC
Q 007768 323 KVKIWDVV-NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFSTG-KIPYVVKLNPDDD 397 (590)
Q Consensus 323 ~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~---~~~~~~~~~-~~~~~~~~~~~~~ 397 (590)
++.||.-. ...+++.++.||...|.|++|+++|++||+|+.|+.|-||.+..+ .++..+..+ +....+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~- 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE- 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-
Confidence 99999763 233789999999999999999999999999999999999999754 345555443 445677888865
Q ss_pred CCcEEEEEECCCeEEEEeCCC---CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCc
Q 007768 398 KQNILLAGMSDKKIVQWDMNT---KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 474 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t---~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~ 474 (590)
.+|++++.|.+|++|+-.. -++++++.+|...|.++.|.+.|.+|+++++|++|+||-+.. .+...|...
T Consensus 163 --dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~ 235 (312)
T KOG0645|consen 163 --DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRA 235 (312)
T ss_pred --ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccchhcccc
Confidence 5899999999999998762 368999999999999999999999999999999999998652 233346778
Q ss_pred eeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee---ecccc-cccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCC
Q 007768 475 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKK-RFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 475 i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~---~~~~~-~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~ 549 (590)
+..+.|. ...|++++.|+.|++|....... .+.+. .-..| ...|+++.|.|. .++|++|+.||.|++|.+.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH--e~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH--EVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc--ccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 8999998 56899999999999997654211 11111 12223 457899999995 7889999999999999864
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.2e-27 Score=271.21 Aligned_cols=288 Identities=17% Similarity=0.259 Sum_probs=226.7
Q ss_pred cccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 007768 250 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
..+.+...+..+++.|..+++|-...... ... .....+..+.+ ...|.+++|+|..+.+|++++.||+|+|||+
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~----~~~-~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIK----DGR-DIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccc----ccc-ccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 44666667778888899999996432100 000 01112334444 4679999999876889999999999999999
Q ss_pred CCCCeeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC
Q 007768 330 VNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 330 ~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
..++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.++.++..+.....+.++.|.+ ..+.+|++|+.|
T Consensus 563 -~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~--~~g~~latgs~d 639 (793)
T PLN00181 563 -ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPS--ESGRSLAFGSAD 639 (793)
T ss_pred -CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeC--CCCCEEEEEeCC
Confidence 57788899999999999999997 78999999999999999999999988887665566666644 334789999999
Q ss_pred CeEEEEeCCCCc-eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC------cEEEEeecCCCCceeEEEEc
Q 007768 409 KKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLH 481 (590)
Q Consensus 409 g~I~iwD~~t~~-~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~------~~~~~~~~~~~~~i~~i~~s 481 (590)
|.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.|++|++||++.. ..+..+ ..|...+.+++|+
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s 717 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLS 717 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEc
Confidence 999999998875 567788999999999997 6789999999999999999743 344444 3578889999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCceeecccc-----cc---cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 482 PNTNWLAAQSLDNQILIYSTRERFQLNKKK-----RF---AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 482 p~g~~la~~s~dg~I~iwd~~~~~~~~~~~-----~~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
|++.+|++|+.|+.|++|+........... .. ........|.+++|+|++.+|++|+.+|.|+||++
T Consensus 718 ~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999976542221110 00 01112356889999999999999999999999986
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4.4e-27 Score=233.74 Aligned_cols=281 Identities=26% Similarity=0.507 Sum_probs=230.6
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg 322 (590)
+..........+...+......|...+.|-.. ..+....+.+|...|.++.|+|+ +++|++++.+|
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~ 73 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-------------TGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDK 73 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEee-------------CCCcEEEEecCCcceeEEEECCC-CCEEEEEcCCC
Confidence 33344444555555555555667777777443 22356778899999999999999 78999999999
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcE
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 401 (590)
.|++|++ ..++.+..+..|...|.++.|++++.++++++.++.|.+||+.+++.+..+.. ...+..+.+.+. ..+
T Consensus 74 ~i~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~ 149 (289)
T cd00200 74 TIRLWDL-ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD---GTF 149 (289)
T ss_pred eEEEEEc-CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc---CCE
Confidence 9999999 56677888889999999999999988888888899999999998888888763 334566777665 356
Q ss_pred EEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEc
Q 007768 402 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 481 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~s 481 (590)
+++++.++.|++||+++++.+..+..|...|.++.|+|+++.+++++.++.|++||++....+..+. .+...+.++.|+
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~ 228 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFS 228 (289)
T ss_pred EEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEc
Confidence 7777779999999999999888898999999999999999999999999999999998877766653 466789999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 482 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 482 p~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
|++.++++++.++.|++|++......... ..+ ...+.+++|+|++++|++++.||.|++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTL---SGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEc---ccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99888888888999999999876544333 344 45688999999999999999999999996
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.8e-28 Score=223.38 Aligned_cols=281 Identities=22% Similarity=0.368 Sum_probs=224.0
Q ss_pred eEEEEcCCCCCEEEEEe-------CCCcEEEEecCCCCeeEEEe--ccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEEC
Q 007768 303 SAIRFFPKYGHLILSAG-------MDTKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 303 ~~l~~sp~~g~~L~sgs-------~Dg~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~ 372 (590)
.++.|+|--.++|+.+. ..|++.|-++. ..+-+..+ ..-...+.+++|++ ..+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~-~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVT-DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecC-CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 67889997666666553 36889999983 33333322 23567899999999 4578889999999999996
Q ss_pred CCC-cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CCEEEEEeCC
Q 007768 373 ETG-QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDD 450 (590)
Q Consensus 373 ~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~-~~~l~s~s~D 450 (590)
... .++..++. +...+..+.+.......+++++-|++|++|+...++.++++.+|...|....|+|. .+.|+++|.|
T Consensus 91 ~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCcchhHHHh-hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 432 45555543 33334444444455578889999999999999999999999999999999999985 6789999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCceeEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
+++++||++.+.....+ ..|...|.++.|+. +.+.|++|+.|+.|++||+++... ++..+.+| .-.|..+.|||
T Consensus 170 ~~l~lwdvr~~gk~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--pl~eL~gh--~~AVRkvk~Sp 244 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSI-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--PLFELNGH--GLAVRKVKFSP 244 (311)
T ss_pred ceEEEEEecCCCceeEE-EeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--cceeecCC--ceEEEEEecCc
Confidence 99999999887555554 35778999999987 567899999999999999987542 24556777 45588999999
Q ss_pred C-CCEEEEEcCCCcEEEEeCCC-CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 530 D-GRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 d-g~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
. ..+|++++.|-+++|||... -.++.+...|+..|..+.|++..+.++|++|+|+.++||+
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6 45789999999999999874 4566677789999999999999999999999999999996
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=253.72 Aligned_cols=277 Identities=24% Similarity=0.424 Sum_probs=236.2
Q ss_pred EEecC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEE-eccCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 293 HTWSG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 293 ~~l~g-H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
..+.+ |...|.|..|. ..++++++.|++|++|+. ..+..+.. +.+|.+.|.+++|..-+.+|++|+.|.+++||
T Consensus 201 ~~~~~~~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~-~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH---DGFFKSGSDDSTLHLWDL-NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee---cCeEEecCCCceeEEeec-ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 34444 67789999998 458999999999999999 56777766 99999999999998778899999999999999
Q ss_pred ECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
|+.+|+|...+.. +...+.++.... ..+++|+.|.+|++|++.++..+..+.+|.++|+++.+. +.++++|+.|
T Consensus 277 d~~sg~C~~~l~g-h~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 277 DCSTGECTHSLQG-HTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred ecCCCcEEEEecC-CCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 9999999999974 333333433322 468889999999999999999999999999999999997 7899999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007768 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
++|++||+.+.+++..+.. |...|.++.+.+. ..+++|+.|+.|++||+.+.. .....+.+|. ..+. .+...
T Consensus 351 ~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~--~~v~--~l~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHT--SLVS--SLLLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCc--cccc--ccccc
Confidence 9999999999999998875 9999999988765 899999999999999999873 3345666663 3333 33447
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeEEEEEec-CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 531 GRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 531 g~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+++|++++.||.|++||..+++++.++.+ |.+.|..+++. ...+++++.||.+++||
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEe
Confidence 88999999999999999999999999998 67888888885 35799999999999997
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-27 Score=246.45 Aligned_cols=273 Identities=17% Similarity=0.316 Sum_probs=234.0
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec
Q 007768 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 303 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
+-+.|+. .+.|++|. ...|++|+. ..+........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 181 nlldWss--~n~laVal-g~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 181 NLLDWSS--ANVLAVAL-GQSVYLWSA-SSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hHhhccc--CCeEEEEe-cceEEEEec-CCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 4456774 46677665 457999998 5666555555558999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 007768 383 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~-~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~ 461 (590)
.++...+.++.+.. ..+.+|+.++.|.++|++..+.... +.+|...|..+.|++++++|++|+.|+.+.|||....
T Consensus 257 ~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 257 GSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 87887777777763 6899999999999999998865555 8889999999999999999999999999999999877
Q ss_pred cEEEEeecCCCCceeEEEEcCC-CCEEEEE--EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE-
Q 007768 462 VVIKYISEPHMHSMPSISLHPN-TNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG- 537 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~-g~~la~~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg- 537 (590)
.+...+. .|...|.+++|+|- ..+||+| +.|++|++|+..++..+..... ...||.+.|++..+-|+++
T Consensus 334 ~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt------gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 334 EPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT------GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred cccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc------CCceeeEEEcCCCCEEEEec
Confidence 7777776 59999999999995 5678876 4789999999998776654432 5789999999998777654
Q ss_pred -cCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 538 -DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 538 -s~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+..|.||++.+.+++..+.+|...|..++++| ++..|++|+.|.++++|+
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWN 459 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEecc
Confidence 4677899999999999999999999999999999 688999999999999996
No 62
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.9e-27 Score=223.19 Aligned_cols=282 Identities=20% Similarity=0.345 Sum_probs=228.5
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeE-EEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
.-...|.+|+|+|....+|+.||.||+|++|++...+..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3457799999999757788899999999999996655443 445679999999999999999999999999999999999
Q ss_pred cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007768 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
+....-.+...+.++.|..... ...|++|+.|++|+.||+|...++.++. -...+.++..- ..+++++..++.|.+
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred CeeeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 8877777777777777776553 4689999999999999999998888775 34556666553 568889999999999
Q ss_pred EECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccc-------ccceEEEEE
Q 007768 456 WEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV-------AGYACQVNF 527 (590)
Q Consensus 456 wdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~-------~~~v~~v~~ 527 (590)
|+++.+ ...+.+..+....+.||++.++....+.|+-+|.+.|..+..... .....|+.|.. --.|.+|+|
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEe
Confidence 999654 445566667788899999999998889999999999999877533 22233444431 124778999
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCC
Q 007768 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
+|....|++.++||++.+||-.....+.+...|..+|+++.|+.++.-+....|.|
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 99999999999999999999988888888889999999999999444344455555
No 63
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=237.17 Aligned_cols=308 Identities=18% Similarity=0.293 Sum_probs=240.7
Q ss_pred ccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeE------
Q 007768 263 ETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM------ 336 (590)
Q Consensus 263 ~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~------ 336 (590)
..+.+||.+........... ... +..+..|.-+|+||+++|+ ..++++++.+|+|.-|++. .++..
T Consensus 112 ~le~~Gr~~r~~a~~v~~~~-----s~~-~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~-tgk~~~~i~~~ 183 (479)
T KOG0299|consen 112 VLEQSGRVRRLVADKVQAPE-----SSD-FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVL-TGKKDRYIIER 183 (479)
T ss_pred HHHhcceeehhhhhhccccc-----ccc-ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehh-cCccccccccc
Confidence 34566777655444332221 122 5677899999999999999 8999999999999999984 33211
Q ss_pred -----------EEe-ccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCc-ceEEEEecCCCCCcEEE
Q 007768 337 -----------RTY-MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILL 403 (590)
Q Consensus 337 -----------~~~-~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lv 403 (590)
..- .+|...|.+++.++||++|++|+.|..|.||+.++.+.++.+..+.. +..++|... .+-++
T Consensus 184 ~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---t~~ly 260 (479)
T KOG0299|consen 184 DEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---TSELY 260 (479)
T ss_pred chhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC---cccee
Confidence 111 37889999999999999999999999999999999999999765443 445555543 35699
Q ss_pred EEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC
Q 007768 404 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 404 sg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
+++.|+.|++|++.....+.++-+|...|..|....-++.+-+|+.|+++++|++... .+.+..++...+.|++|- +
T Consensus 261 s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~I-n 337 (479)
T KOG0299|consen 261 SASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFI-N 337 (479)
T ss_pred eeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEe-c
Confidence 9999999999999999999999999999999999988888888889999999999444 344445788899999998 4
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecccccccCcccc-------cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----e
Q 007768 484 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA-------GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----K 552 (590)
Q Consensus 484 g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~----~ 552 (590)
...|++|+.+|.|.+|++.....+.....-.+-... .+|++++..|...++++|+.+|.|++|-+..+ .
T Consensus 338 ~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 338 DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence 567999999999999999877666544433322221 38999999999999999999999999998776 4
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCc
Q 007768 553 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 553 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
++..+. -.+.|++++|++++..+++.+|..-.
T Consensus 418 ~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 418 LLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred eeeecc-cccEEEEEEEccCCCEEEEecccccc
Confidence 555555 56789999999955445665555433
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=6.4e-27 Score=243.50 Aligned_cols=283 Identities=18% Similarity=0.311 Sum_probs=242.7
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
-++.||...|.+++++.+ ...++||+ .+.|+||+. .+.++++++... .+.+..|.|.++++++|...|.+.++|+
T Consensus 367 i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~-~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNR-DTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeeccchhheeEEEeecC-ceeeeecC-CCcEEEEEc-cCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEe
Confidence 356799999999999988 55555554 678999999 689999998754 8999999999999999999999999999
Q ss_pred CCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-----Cce--EEEEc-----CcCCceeEEEEeC
Q 007768 373 ETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEI--TQEYD-----QHLGAVNTITFVD 439 (590)
Q Consensus 373 ~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-----~~~--~~~~~-----~h~~~V~~i~~~p 439 (590)
.+...+.++.. ....+.+...|++. .+++|+.|.+|++||..- +.. +..+. .-...|.|+.++|
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~---g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNK---GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCC---ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 99888877764 34567788887764 599999999999999742 111 11111 2346799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
++++|+++--|.+|+||-+++.+....+. +|.-+|.||.++|+++.+++|+.|.+|+||-+.-+.+- +.+-+| .
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~fAH--d 592 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSFFAH--D 592 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhhhcc--c
Confidence 99999999999999999999887766664 69999999999999999999999999999998766544 455566 5
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..|+++.|-|+..++++++.||.|+-||-...++++++.+|...|++++.+| ++++++|+|.|.+|++|.
T Consensus 593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeee
Confidence 6789999999999999999999999999999999999999999999999999 788999999999999994
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=220.27 Aligned_cols=268 Identities=18% Similarity=0.342 Sum_probs=216.3
Q ss_pred cccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCC
Q 007768 266 YQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA 345 (590)
Q Consensus 266 ~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~ 345 (590)
..||+++....+.+.+.+ ...+ .-..++..++|++...+.+++++.||+++|||+.....+++.++.|...
T Consensus 36 G~G~L~ile~~~~~gi~e--------~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E 106 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQE--------CQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE 106 (311)
T ss_pred cCceEEEEecCCCCCeEE--------EEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh
Confidence 467888876653322211 1222 3467899999999989999999999999999997777899999999999
Q ss_pred eEEEEEcc-CCCEEEEEecCCeEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE
Q 007768 346 VRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 423 (590)
Q Consensus 346 V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~ 423 (590)
|.++.|++ ....++++|.|++|++|+....+.+.+|..+. .++...|+|. .++++++++.|+.+++||++......
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~--~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH--IPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC--CCCeEEEccCCceEEEEEecCCCcee
Confidence 99999999 67788899999999999999999999986633 2345555554 45899999999999999999765555
Q ss_pred EEcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEc
Q 007768 424 EYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYST 501 (590)
Q Consensus 424 ~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~ 501 (590)
.+..|...|.|+.|+.- .+.+++|+.|+.|++||++.-+.......+|...|..+.|+|. ..+|++++.|-+++|||.
T Consensus 185 ~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 185 SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 58899999999999974 4578899999999999998765443333679999999999997 468999999999999998
Q ss_pred CCceeecccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeC
Q 007768 502 RERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~ 548 (590)
...... +.+...| ...++.+.||+ ++.++++.+.|+.++||+-
T Consensus 265 ~~~ds~--~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSA--IETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhh--hhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 754333 2233334 56788899998 6779999999999999983
No 66
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=235.03 Aligned_cols=253 Identities=21% Similarity=0.418 Sum_probs=207.5
Q ss_pred CccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec
Q 007768 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 284 ~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~ 363 (590)
|......+++.+.||++.|.|+.|. ..+|++|+.|.+|+|||+ ++++++.++.+|...|..+.|+. .++++++.
T Consensus 222 WD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv-~tge~l~tlihHceaVLhlrf~n--g~mvtcSk 295 (499)
T KOG0281|consen 222 WDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDV-NTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSK 295 (499)
T ss_pred eccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEec-cCCchhhHHhhhcceeEEEEEeC--CEEEEecC
Confidence 3445567888999999999999996 569999999999999999 89999999999999999999974 59999999
Q ss_pred CCeEEEEECCCCcEEE--EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 364 DKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
|.+|.|||+....-+. ..-.++...+-.+.++. .++++++.|.+|++|++.+++.+..+.+|...|.|+.+ .+
T Consensus 296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~ 370 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RD 370 (499)
T ss_pred CceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cC
Confidence 9999999998654221 11223433333333333 58999999999999999999999999999999999998 48
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc------cccccC
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK------KKRFAG 515 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~------~~~~~~ 515 (590)
+++++||.|.+|++||+..+.+++.+. +|..-|.++.|. .+.+++|..||.|++||+........ +..+..
T Consensus 371 rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~ 447 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 447 (499)
T ss_pred eEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence 899999999999999999999887764 688899999994 67899999999999999976543211 112222
Q ss_pred cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEE
Q 007768 516 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
| .+.|..+.| |...|++++.|.+|.|||+.++.+-
T Consensus 448 h--sgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 448 H--SGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred c--cceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 3 567777888 6778999999999999999776543
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=232.19 Aligned_cols=277 Identities=20% Similarity=0.302 Sum_probs=231.7
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
...|++|+|+|...+-+++.+. -.+.||+. ......+++......|.+++|..||++|++|...|.|+|+|+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~-~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSS-VTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEec-chhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3579999999986666666654 46899998 566677777778899999999999999999999999999997775566
Q ss_pred EEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-EEEEEeCCCcEEEE
Q 007768 379 RTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVW 456 (590)
Q Consensus 379 ~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iw 456 (590)
+.+..+ .+...+.|++... .+|++|+.|+.+++||+.+......+.+|...|.|.+|+|.+. .+++||.||.|++|
T Consensus 104 R~~~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHhhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 666554 4455677777654 7899999999999999999987668999999999999999765 78999999999999
Q ss_pred ECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007768 457 EFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 457 dl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
|++.. ..+..+ .|..+|.++.+-|.|..+++++ .+.|++||+.++.++. .....| ...|+|+++..++..|+
T Consensus 182 DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll--~~~~~H--~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 182 DTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL--TSMFNH--NKTVTCLRLASDSTRLL 254 (487)
T ss_pred EeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh--hhhhcc--cceEEEEEeecCCceEe
Confidence 99987 444444 6899999999999999999876 6789999998654442 223335 46799999999999999
Q ss_pred EEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 536 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 536 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
+|+-||.|++||+.+.+.+..+. -.++|.+++.+| +...++.|..||.+.+
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred ecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeee
Confidence 99999999999999999999998 567899999999 6778999999998754
No 68
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.8e-26 Score=216.83 Aligned_cols=292 Identities=20% Similarity=0.328 Sum_probs=235.4
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-----------eeE---EEeccCCCCeEEEEEcc-CCCEEEE
Q 007768 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-----------KCM---RTYMGHSKAVRDISFCN-DGTKFLT 360 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-----------~~~---~~~~~h~~~V~~l~fsp-dg~~l~s 360 (590)
+.|.+.|+++...+..|+++++|+.||.|.|||+.+.. +++ ..-.+|.-.|.++.|-| |.-.|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999999989999999999999999995432 111 01236888999999999 6678999
Q ss_pred EecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007768 361 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
++.|.+++|||+.+.+....|.....++..+++|-.....++++|..+-+|++.|+.+|.....+.+|.+.|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 99999999999999999999999999999999998887788999999999999999999999999999999999999998
Q ss_pred CCE-EEEEeCCCcEEEEECCCC-cEEEEe-------------ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007768 441 NRR-FVTSSDDKSLRVWEFGIP-VVIKYI-------------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 441 ~~~-l~s~s~Dg~I~iwdl~~~-~~~~~~-------------~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~ 505 (590)
..+ |++|+.||.|++||++.. .+...+ ...|.+.+..++|..++.++++++.|..+++|+..++.
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 775 678999999999999754 222222 23466789999999999999999999999999987764
Q ss_pred eecccccccCcc-cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 506 QLNKKKRFAGHI-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 506 ~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
..........|. ..+....+. +.+...++---.++.+.++++-++..+..+..|-..|.++++-| +-..+.++..|+
T Consensus 280 ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNG 357 (397)
T ss_pred ccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCC
Confidence 332111100010 011111122 33333444444568999999999999999999988999999999 666799999999
Q ss_pred cEEEc
Q 007768 585 LIKYW 589 (590)
Q Consensus 585 ~I~iW 589 (590)
.|..|
T Consensus 358 ni~~w 362 (397)
T KOG4283|consen 358 NIYMW 362 (397)
T ss_pred ccccc
Confidence 99988
No 69
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.5e-25 Score=240.14 Aligned_cols=264 Identities=16% Similarity=0.201 Sum_probs=200.0
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeE-------------EEeccCCCCeEEEEEcc-CCCEEEEEecCC
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM-------------RTYMGHSKAVRDISFCN-DGTKFLTASYDK 365 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-------------~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg 365 (590)
..|.....+++ +..+++++.+.....|+.. .+..+ ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 21 ~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~-gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 21 LNVTPSTALWD-CSNTIACNDRFIAVPWQQL-GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eccccccccCC-CCCcEeECCceEEEEEecC-CceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 34555555666 5556777777777777652 22111 24678999999999999 889999999999
Q ss_pred eEEEEECCCCc-------EEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEE
Q 007768 366 NIKYWDTETGQ-------VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF 437 (590)
Q Consensus 366 ~I~vWd~~t~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~ 437 (590)
+|++||+.++. .+..+..+ ..+.++.|+|.. .++|++|+.|+.|++||+++++.+..+..|...|.+++|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 99999997653 34444432 345567777653 368999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC-ceeEEEEcCCCCEEEEEE----cCCeEEEEEcCCceeeccccc
Q 007768 438 VDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQS----LDNQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-~i~~i~~sp~g~~la~~s----~dg~I~iwd~~~~~~~~~~~~ 512 (590)
+|++.+|++++.|+.|+|||++++..+..+.. |.. .+..+.|.+++..|++++ .|+.|++||+++..... ..
T Consensus 177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~--~~ 253 (493)
T PTZ00421 177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY--ST 253 (493)
T ss_pred ECCCCEEEEecCCCEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce--eE
Confidence 99999999999999999999999888776653 444 345678899888777654 47899999998643221 11
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEec-CCCcEEEEEEcC
Q 007768 513 FAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHP 571 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp 571 (590)
...+ ....+....|++++++|++|+ .||.|++||+.+++++..+.. +..++.+++|.|
T Consensus 254 ~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 254 VDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred eccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 1111 123455578999999999887 599999999999998877654 345677888887
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-25 Score=213.66 Aligned_cols=249 Identities=18% Similarity=0.319 Sum_probs=206.6
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc-eEEEEecCCCCCcEEEEEEC--CCe
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMS--DKK 410 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~--dg~ 410 (590)
++.+.+......|++|.|+.+|.++++++.|..|+|||..+++.++++...+.. ..++|.... +.++.++. |..
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~---~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS---NTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC---ceEEEccCCCCCc
Confidence 344455556788999999999999999999999999999999999999876544 355555433 45666666 889
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEE
Q 007768 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~ 490 (590)
|+..++.+.+.++.+.+|...|++|+.+|-+..|++++.|++|++||++...+...+. ...-..++|+|.|-++|++
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGLIFALA 158 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999888877763 3445678999999999999
Q ss_pred EcCCeEEEEEcCCceeecccccccCc-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCc---EEE
Q 007768 491 SLDNQILIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV---CIG 566 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~---V~~ 566 (590)
...+.|++||++.-.. .+...+.-. ........+.|||||++|+.++..+.+++.|.-+|....++..+... -.+
T Consensus 159 ~~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred cCCCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 9888999999986421 111111111 12355678999999999999999999999999999999999887653 267
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 567 CEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 567 v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..|.| ++.+|++|+.||+|.+|+
T Consensus 238 a~ftP-ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 238 ATFTP-DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EEECC-CCcEEEEecCCCcEEEEE
Confidence 89999 788999999999999996
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=7.2e-27 Score=228.68 Aligned_cols=253 Identities=19% Similarity=0.324 Sum_probs=218.5
Q ss_pred CCccCCcc--eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEE
Q 007768 283 DHCYIPKR--LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 283 ~~~~~p~~--~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
.|+..+.+ ++.+|.|-.++|+++.|.++ ++.+++++.|+.+++|++ ...+...++.+|+..|+++.|......+++
T Consensus 201 ~W~v~~~k~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnv-d~~r~~~TLsGHtdkVt~ak~~~~~~~vVs 278 (459)
T KOG0288|consen 201 LWNVLGEKSELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNV-DSLRLRHTLSGHTDKVTAAKFKLSHSRVVS 278 (459)
T ss_pred hhhcccchhhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeec-cchhhhhhhcccccceeeehhhccccceee
Confidence 34555555 78899999999999999999 889999999999999999 788999999999999999999987777999
Q ss_pred EecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007768 361 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
|+.|.+|++||+....|.+++-.......+.+.. ..+++|..|++|++||+++..++.....+. .|+++..+++
T Consensus 279 gs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~ 352 (459)
T KOG0288|consen 279 GSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMD 352 (459)
T ss_pred ccccchhhhhhhhhhheeccccccccccceEecc-----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccC
Confidence 9999999999999999988877666555555542 469999999999999999999999987665 9999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeecC---CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcc
Q 007768 441 NRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
+..+++++.|.++.+.|+++......+... ..+..+.+.|+|++.|+++|+.||.|+||++.+++..........
T Consensus 353 g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s-- 430 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS-- 430 (459)
T ss_pred CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC--
Confidence 999999999999999999998877766532 233488999999999999999999999999998876644443322
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007768 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
...|+++.|+|.|..|++++.++.+.+|
T Consensus 431 -~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 431 -NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -CcceEEEEEcCCCchhhcccCCcceEec
Confidence 2368999999999999999999999999
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.1e-24 Score=195.91 Aligned_cols=290 Identities=18% Similarity=0.284 Sum_probs=226.4
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC--------------CCeeEEEeccCCCCeEEEEEccCCC
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN--------------SGKCMRTYMGHSKAVRDISFCNDGT 356 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~--------------~~~~~~~~~~h~~~V~~l~fspdg~ 356 (590)
++.++ ..+..|.+++|+|. |.+.++|+...+++|.-... .....+.-+.|.+.|.|.+|+|+|.
T Consensus 25 ~i~~l-~dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 25 AINIL-EDSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred EEEEe-cchhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 34444 45678999999999 89999999999999875411 0112233456899999999999999
Q ss_pred EEEEEecCCeEEEEECCCCcE------EEEecCCCcceEEEEecCCCCC-cEEEEE-ECCCeEEEEeCCCCceEEEEcCc
Q 007768 357 KFLTASYDKNIKYWDTETGQV------IRTFSTGKIPYVVKLNPDDDKQ-NILLAG-MSDKKIVQWDMNTKEITQEYDQH 428 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~------~~~~~~~~~~~~~~~~~~~~~~-~~lvsg-~~dg~I~iwD~~t~~~~~~~~~h 428 (590)
+|++|+.|.+|++.-.+...+ +..-.....+..++|..++..+ .+|+++ ..|.+|++-|...|+..+.+.+|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 999999999999986653322 2112234455667776655433 444443 45788999999999999999999
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC------CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~------~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
.+-|.++-- =++-.|++|+.|.+|++||++-+.++..+... ....|.++++.|.|++|++|..|....+||++
T Consensus 183 tghilalys-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 183 TGHILALYS-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred cccEEEEEE-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 999987632 25779999999999999999999988877532 23568999999999999999999999999999
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eEEEEEecCCCcEEEEEEcCCCCCEEE
Q 007768 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~----~~~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
.+..+ +.+..| ...|.++.|||...|+++++.|..|++-|++.. -++.....|...+..+.|+|++- -++
T Consensus 262 g~r~i---q~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~-sfi 335 (350)
T KOG0641|consen 262 GGRMI---QRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF-SFI 335 (350)
T ss_pred CCcee---eeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc-eee
Confidence 88666 445555 567889999999999999999999999998642 23444556888999999999544 577
Q ss_pred EEeCCCcEEEc
Q 007768 579 TCGWDGLIKYW 589 (590)
Q Consensus 579 s~g~Dg~I~iW 589 (590)
+.+.|.++.+|
T Consensus 336 sssadkt~tlw 346 (350)
T KOG0641|consen 336 SSSADKTATLW 346 (350)
T ss_pred eccCcceEEEe
Confidence 88889999999
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=220.07 Aligned_cols=256 Identities=21% Similarity=0.367 Sum_probs=221.8
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
.+...+++.+|+||+..|+.+.|+|+ ...+++++.|-.|+||.+ ....+......|..+|+.+..+|.|.||++++.|
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~-~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d 324 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSV-PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASND 324 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecc-ccccCccccccccccceeeeeccCCcEEEEecCC
Confidence 34566789999999999999999999 889999999999999999 4555677778999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEecCCC---cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 365 KNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
++..+.|++++.++....... ...+..|+|++ .+|.+|..|+.|++||+.++..+..|.+|.++|..|.|+.+|
T Consensus 325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG 401 (506)
T ss_pred ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc
Confidence 999999999999988776642 24567777765 789999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
-+|+++++|+.|++||++..+..+.+.......+.++.|.+.|.+|+.++.+=+|++++-.+ ........+..| .+.
T Consensus 402 Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~--sg~ 478 (506)
T KOG0289|consen 402 YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADH--SGL 478 (506)
T ss_pred eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhc--ccc
Confidence 99999999999999999999988888877777899999999999999998777777776433 223333444444 467
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.+.+.|....+++++++.|..++++.+
T Consensus 479 st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 479 STGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeeecccceEEeeccchhheEEeec
Confidence 778999999999999999999888754
No 74
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-25 Score=211.35 Aligned_cols=296 Identities=17% Similarity=0.305 Sum_probs=233.1
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCe
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
.|.++-+++..-. -.|+.|++. |.+||+|+.||.|.|||+ .+...-+.+.+|..+|.+++||++|+.|+|+|.|..
T Consensus 13 ~PEel~~tld~~~--a~~~~Fs~~-G~~lAvGc~nG~vvI~D~-~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 13 YPEELTHTLDNPL--AECCQFSRW-GDYLAVGCANGRVVIYDF-DTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred ChHhhceeccCCc--cceEEeccC-cceeeeeccCCcEEEEEc-cccchhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 4667777775433 889999999 999999999999999999 577788899999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCc----CCceeEEEEeCCCC
Q 007768 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH----LGAVNTITFVDSNR 442 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h----~~~V~~i~~~p~~~ 442 (590)
|.+||+..|.+++.+....++....++|... +.+++.-.+..-.+.++..+.....-... .....+..|.+.|+
T Consensus 89 i~lwDl~~gs~l~rirf~spv~~~q~hp~k~--n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR--NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred eEEEeccCCCceeEEEccCccceeeeccccC--CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC
Confidence 9999999999999999999999999998654 55666655555555555543211110111 11223446889999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee------ecccccccCc
Q 007768 443 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ------LNKKKRFAGH 516 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~------~~~~~~~~~~ 516 (590)
++++|...|.+.++|..+.+++..+.......|..+.++..|..|+..+.|..|+.|+++.-.. +.....+..-
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 9999999999999999999888777655557899999999999999999999999999863211 1111222222
Q ss_pred ccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCCCeEEEEEecCC-CcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 517 IVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+...-.+++||.+|.|++.|+. ...++||.-..|.+++.+.+.. .....+.|+| -...+++. ..|.|+||.
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWA 320 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEE
Confidence 33334456899999999998874 4569999999999999999877 4678899999 45566666 689999993
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.6e-25 Score=243.02 Aligned_cols=285 Identities=21% Similarity=0.384 Sum_probs=227.3
Q ss_pred ecCC-CCCeeEEEEcCCCCCEEEEEe--CCCcEEEEecCC-----------CCeeEEEeccCCCCeEEEEEccCCCEEEE
Q 007768 295 WSGH-TKGVSAIRFFPKYGHLILSAG--MDTKVKIWDVVN-----------SGKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 295 l~gH-~~~V~~l~~sp~~g~~L~sgs--~Dg~I~iWd~~~-----------~~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
|-+| ...|.+|..+|+ +..++||+ .||.+.||+... -.+.+.+...|.+.|+|+.|++||.+||+
T Consensus 8 wv~H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 4455 467999999999 99999999 999999998731 13456677889999999999999999999
Q ss_pred EecCCeEEEEECCC------------------CcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce
Q 007768 361 ASYDKNIKYWDTET------------------GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~ 421 (590)
||.|+.|.||.... .+++..+..+ ..+..++|.|+ ..+|++++.|++|.+|+.++.+.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~---~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD---DSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC---ccEEEEecccceEEEEcccccee
Confidence 99999999998762 1233444332 23344555553 37999999999999999999999
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC-----CCceeEEEEcCCCCEEEEEEc----
Q 007768 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-----MHSMPSISLHPNTNWLAAQSL---- 492 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-----~~~i~~i~~sp~g~~la~~s~---- 492 (590)
+..+.+|.+.|-.+.|.|-|++|++-++|++|+||.+..-...+.+..+. ...+..+.|+|+|.+|++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 99999999999999999999999999999999999987766666665543 335788999999999998642
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCC-------------CC----EEEEEcCCCcEEEEeCCCCeEEE
Q 007768 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-------------GR----FVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-------------g~----~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
-..+.|.+-.+. ..-..+-|| ...+.++.|+|. .. .+|+|+.|++|-||.....+++.
T Consensus 244 ~~~~~IieR~tW---k~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 244 KSTIAIIERGTW---KVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred cceeEEEecCCc---eeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 245777665432 334567788 467888999982 11 57899999999999998877765
Q ss_pred EEe-cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 556 TLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 556 ~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.+. .....|.+++|+| ++..|+.|+.||+|.+.
T Consensus 319 vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALI 352 (942)
T ss_pred hhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEE
Confidence 553 2356899999999 78889999999999874
No 76
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=215.36 Aligned_cols=283 Identities=18% Similarity=0.289 Sum_probs=231.5
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-eeEEEeccCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCc
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQ 376 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~ 376 (590)
.++|++|.|+|. ..+|++|+.|++++||.+.... ..+..+.--..+|.+.+|.|+|. .+++++....+..||+++.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 468999999999 8999999999999999993222 34555656678999999999998 89999999999999999987
Q ss_pred EEEEecCC--C--cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007768 377 VIRTFSTG--K--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 377 ~~~~~~~~--~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
....-... . ......+++++ ++|+..+..|.|.+....+++.+..++ ..+.|..++|+.+++.|++++.+|.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~---~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDS---NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred cccccCCCCcccchhheeEecCCC---CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCce
Confidence 65543221 1 22334444443 689999999999999999999998886 5788999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee---ecccccccCcccccceEEEEEcC
Q 007768 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|.+||++...++..+.....-.-++++.++++.|||+|+..|.|.|||..+... ..+.+.+.. ....|+++.|++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~ 445 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--LTTAITSLQFNH 445 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--hheeeeeeeeCc
Confidence 999999999999888766666677889999999999999999999999765322 222222222 245688999999
Q ss_pred CCCEEEEEcC--CCcEEEEeCCCCeEEEEEecCC---CcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 530 DGRFVMSGDG--EGKCWFWDWKSCKVFRTLKCHE---GVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 530 dg~~l~sgs~--dg~I~iwd~~t~~~~~~l~~h~---~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
|+++|+.++. ...+++-.+.+......+.... +.|+|++|+| ++.+|+.|..+|.|.+|
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLF 509 (514)
T ss_pred chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeE
Confidence 9999988874 6679999999988888776433 4689999999 77799999999999999
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=239.08 Aligned_cols=261 Identities=23% Similarity=0.410 Sum_probs=217.5
Q ss_pred CCCccCCcceEEE-ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEE
Q 007768 282 NDHCYIPKRLVHT-WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 282 ~~~~~~p~~~i~~-l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
..|+-.....+.+ +.||.+.|.+++|.. .+.+|++|+.|.+++|||+ .++.|..++.+|...|.++... ..++++
T Consensus 231 ~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~--~~~~~s 306 (537)
T KOG0274|consen 231 HLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTID--PFLLVS 306 (537)
T ss_pred EEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEcc--CceEee
Confidence 3456667777777 999999999999987 4899999999999999997 8999999999999999999985 457888
Q ss_pred EecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC
Q 007768 361 ASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p 439 (590)
|+.|.+|++|++.++.++..+.. ...+.++.+. ..++++|+.|+.|.+||+.+++++..+.+|...|.++.+..
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS 381 (537)
T ss_pred ccCCceEEEEeccCcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC
Confidence 99999999999999999999984 3444444444 36899999999999999999999999999999999998865
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccc
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
. .++++|+.|++|++||+++. .++..+. .|..-+..+ ...+++|++++.|+.|++||...+..+...... +
T Consensus 382 ~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~-- 453 (537)
T KOG0274|consen 382 E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--H-- 453 (537)
T ss_pred c-ceEEeeeeccceEeecCCchhhhhhhhc-CCccccccc--ccccceeEeccccccEEEeecccCceeeeeccC--C--
Confidence 5 89999999999999999999 7777664 355555444 346889999999999999999988776544432 2
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC
Q 007768 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
.+.+..+++. ...+++++.+|.+.+||++++++.+.+-.+.
T Consensus 454 ~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 454 VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred cccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 3445556554 4688899999999999999999988774443
No 78
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.8e-24 Score=232.88 Aligned_cols=238 Identities=16% Similarity=0.243 Sum_probs=183.5
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-------eeEEEeccCCCCeEEEEEccCCCE-E
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------KCMRTYMGHSKAVRDISFCNDGTK-F 358 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-------~~~~~~~~h~~~V~~l~fspdg~~-l 358 (590)
.....+..+.+|.+.|.+|+|+|+.+++|++|+.||+|+|||+...+ .++..+.+|...|.+++|+|++.. |
T Consensus 62 ~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 62 MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIM 141 (568)
T ss_pred CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEE
Confidence 34457889999999999999999868899999999999999995332 234567899999999999998875 5
Q ss_pred EEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEE--
Q 007768 359 LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT-- 436 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~-- 436 (590)
++++.|++|+|||+++++.+..+.....+.++.|++++ .+|++++.|+.|++||+++++.+..+.+|.+.+.+..
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG---~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG---NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC---CEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 78999999999999999988777666667777787754 5888899999999999999999999999988754433
Q ss_pred ---EeCCCCEEEEEeCCC----cEEEEECCC-CcEEEEeecC-CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007768 437 ---FVDSNRRFVTSSDDK----SLRVWEFGI-PVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 437 ---~~p~~~~l~s~s~Dg----~I~iwdl~~-~~~~~~~~~~-~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~ 507 (590)
|++++.+|++++.++ +|+|||++. ..++..+... +...+......+++.++++|+.|+.|++|++..+. +
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~ 297 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-I 297 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-E
Confidence 347888999988774 799999985 4445443221 22223333335568899999999999999997653 2
Q ss_pred cccccccCcccccceEEEEEcCCC
Q 007768 508 NKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
..+..+. ...+...++|.|+.
T Consensus 298 ~~l~~~~---s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 298 RKVNEYK---SCSPFRSFGFLPKQ 318 (568)
T ss_pred Eeecccc---cCCCccceEEcccc
Confidence 2222222 34556678898864
No 79
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4.6e-24 Score=228.60 Aligned_cols=230 Identities=16% Similarity=0.218 Sum_probs=180.3
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC------eeEEEeccCCCCeEEEEEccCC-CEEEEEecCCe
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKN 366 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~ 366 (590)
.+.||.+.|++++|+|.++++|++|+.|++|+|||+...+ .++..+.+|...|.+++|+|++ ++|++|+.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4679999999999999448899999999999999994332 3577889999999999999975 69999999999
Q ss_pred EEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEE
Q 007768 367 IKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~-V~~i~~~p~~~~l 444 (590)
|+|||+++++.+..+..+ ..+.++.|++++ .+|++|+.|+.|++||+++++.+..+..|.+. +..+.|.+++..|
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG---~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDG---SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCC---CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999999988887643 456678887754 68999999999999999999999999888765 4567888888888
Q ss_pred EEEe----CCCcEEEEECCCCcE-EEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCccc
Q 007768 445 VTSS----DDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 445 ~s~s----~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
++++ .|+.|++||++.... +..........+....|++++++|++++ .|+.|++||+.++....... +. .
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~-~~---s 302 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS-YS---S 302 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee-cc---C
Confidence 7764 478999999987543 3322222334566677899999999887 49999999998765433211 11 1
Q ss_pred ccceEEEEEcCC
Q 007768 519 AGYACQVNFSPD 530 (590)
Q Consensus 519 ~~~v~~v~~spd 530 (590)
......++|.|.
T Consensus 303 ~~~~~g~~~~pk 314 (493)
T PTZ00421 303 VEPHKGLCMMPK 314 (493)
T ss_pred CCCCcceEeccc
Confidence 233445777774
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=212.67 Aligned_cols=292 Identities=22% Similarity=0.391 Sum_probs=235.5
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
.++++.|.||..+|..++.... ...+.+++.|.+.+||.+ +.+.|+.+|.||.+.|++|.|++.+.++++++.|++-.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~-Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADST-QPICGTASADHTARIWSL-ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred EeehhhhcccccceeeehhhcC-CcceeecccccceeEEee-ccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 4677888999999999998877 679999999999999999 79999999999999999999999999999999999999
Q ss_pred EEECC------C------------------------------C----cEEEEecCCCcceEEEEecCCCCCcEEEEEECC
Q 007768 369 YWDTE------T------------------------------G----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 369 vWd~~------t------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
||... . + .++..+. ++...+++..+.. ++..+++++.|
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~-gg~Q~vTaSWD 293 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLA-GGQQMVTASWD 293 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhc-Ccceeeeeecc
Confidence 99621 0 0 0111121 2222233333322 34569999999
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEE
Q 007768 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la 488 (590)
.+-.+||++++++++.+.+|....+.++-+|..+++++.+.|.+.++||++..........+|...|+++.|..+. .++
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-cee
Confidence 9999999999999999999999999999999999999999999999999996655555667899999999998654 588
Q ss_pred EEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEE----EEecCCCcE
Q 007768 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR----TLKCHEGVC 564 (590)
Q Consensus 489 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~----~l~~h~~~V 564 (590)
+|+.|.+|++||+++.... +.++. ....+..++.+..+..|+.--.+..|++||+...++-+ .-++|...|
T Consensus 373 SgSDDrTvKvWdLrNMRsp--lATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSP--LATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred ecCCCceEEEeeeccccCc--ceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence 9999999999999875432 22222 24667789999999999999999999999987654422 335899999
Q ss_pred EEEEEcCCC-CCEEEEEeCCCcEEEcC
Q 007768 565 IGCEWHPLE-QSKVATCGWDGLIKYWD 590 (590)
Q Consensus 565 ~~v~~sp~~-~~~l~s~g~Dg~I~iWD 590 (590)
+|++|...- -.-|++||.|..+.=|.
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeccccCcccccccccccceeeeeE
Confidence 999997521 12488999999988773
No 81
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=3e-26 Score=228.56 Aligned_cols=283 Identities=20% Similarity=0.330 Sum_probs=224.2
Q ss_pred ccCCCCCCcccCC-cceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007768 242 GNAGGEKGEHVED-KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 242 ~~~~~~~~~~~~~-~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~ 320 (590)
++..+.....+-+ +.-++.+++.|..+.+|-. |-..+++++|.||+.+|..++|+++ |..++|+|.
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v------------y~~~~~lrtf~gH~k~Vrd~~~s~~-g~~fLS~sf 278 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV------------YDDRRCLRTFKGHRKPVRDASFNNC-GTSFLSASF 278 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEE------------ecCcceehhhhcchhhhhhhhcccc-CCeeeeeec
Confidence 3444444444444 5556678889999999844 3346899999999999999999999 999999999
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCC
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDK 398 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~ 398 (590)
|+.|++||+ ++|+++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..+ ..+..+.|.+.+
T Consensus 279 D~~lKlwDt-ETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g-- 354 (503)
T KOG0282|consen 279 DRFLKLWDT-ETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG-- 354 (503)
T ss_pred ceeeeeecc-ccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC--
Confidence 999999999 7899888875 34568999999988 89999999999999999999988877543 334556666654
Q ss_pred CcEEEEEECCCeEEEEeCCCCceEEEE-cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE--EEeecCCCC--
Q 007768 399 QNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEPHMH-- 473 (590)
Q Consensus 399 ~~~lvsg~~dg~I~iwD~~t~~~~~~~-~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~--~~~~~~~~~-- 473 (590)
..+++.+.|+.++||+.+..-.+... ..+.-...||..+|++++++.-+.|+.|.+|.+...-.. +....+|..
T Consensus 355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 57999999999999999988655443 223345778999999999999999999999987543221 111223332
Q ss_pred ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEe
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd 547 (590)
.-..+.|+|+|.+|++|+.||.+.+||.++...+ ..+..| ...++.+.|+|. ...+|+++.+|.|++|+
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~---~~lkah--~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV---SKLKAH--DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEeechhhhhh---hccccC--CcceEEEEecCCCcceeEecccCceeEecC
Confidence 3456889999999999999999999999886555 344455 567888999995 45689999999999996
No 82
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=211.69 Aligned_cols=288 Identities=19% Similarity=0.365 Sum_probs=234.2
Q ss_pred hccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007768 241 KGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~ 320 (590)
.+++.+++..+...+.++.++...|...|+|- +...+|+.++.||.+.|+||+|++. +.++++++.
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs-------------~Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSG 210 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWS-------------LESGACLATYTGHTGSVNSIKFHNS-GLLLLTASG 210 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEe-------------eccccceeeecccccceeeEEeccc-cceEEEccC
Confidence 45666777777788888999999999999993 4456788899999999999999998 999999999
Q ss_pred CCcEEEEec------CC-----------------------------C----CeeEEEeccCCCCeEEEEEccCCCEEEEE
Q 007768 321 DTKVKIWDV------VN-----------------------------S----GKCMRTYMGHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 321 Dg~I~iWd~------~~-----------------------------~----~~~~~~~~~h~~~V~~l~fspdg~~l~s~ 361 (590)
|++..||.. .. + ..++..+.+|...|.+..|...|+.++++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTa 290 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTA 290 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeee
Confidence 999999972 00 1 12456788999999999999999999999
Q ss_pred ecCCeEEEEECCCCcEEEEecCCCcce-EEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC
Q 007768 362 SYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p 439 (590)
+.|++..+||+++|.++..+..+.... .++.+| .+.++++.+.|.+.++||++.. ..+..|.+|...|+++.|.-
T Consensus 291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp---tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHP---TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred eccccceeeeeccCceeccccCcchhccccccCC---cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 999999999999999999987654433 233333 4589999999999999999854 46778999999999999986
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc--cccCc
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK--RFAGH 516 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~-~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~--~~~~~ 516 (590)
+ ..+++|++|.+|++||+++.. ++..+ ....++..++++..+..|+.-..+.+|++||+... ++..+. .-.+|
T Consensus 368 d-d~vVSgSDDrTvKvWdLrNMRsplATI--RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgH 443 (481)
T KOG0300|consen 368 D-DRVVSGSDDRTVKVWDLRNMRSPLATI--RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGH 443 (481)
T ss_pred C-CceeecCCCceEEEeeeccccCcceee--ecCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCccccccc
Confidence 5 479999999999999998764 34444 25678999999988889999998999999999653 344443 23344
Q ss_pred ccccceEEEEEcCCC--CEEEEEcCCCcEEEEeCCCC
Q 007768 517 IVAGYACQVNFSPDG--RFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 517 ~~~~~v~~v~~spdg--~~l~sgs~dg~I~iwd~~t~ 551 (590)
...|++++|..+. .-|++++-|..+.-|.+...
T Consensus 444 --rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 444 --RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred --ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 5678999997654 34778889999999987653
No 83
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-24 Score=200.28 Aligned_cols=285 Identities=19% Similarity=0.293 Sum_probs=225.9
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007768 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~D 321 (590)
++..+.-..+......++.++..|.....|.. +....+-++.||++.|.|+...-+ ...|++|+.|
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s-------------~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD 73 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYS-------------LNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSAD 73 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEe-------------cCCceeeeecCCCceEEEEEecCC-cceeeecccc
Confidence 34445555666666777888888888888854 234567899999999999999998 8999999999
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec-----CCeEEEEECC-------CCcEEEEecC-CCcce
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----DKNIKYWDTE-------TGQVIRTFST-GKIPY 388 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-----Dg~I~vWd~~-------t~~~~~~~~~-~~~~~ 388 (590)
.+++|||+ ..++++.++. ...+|..+.|+++|++++.+.. .+.|.++|++ ...++..+.. ...+.
T Consensus 74 ~t~kLWDv-~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 74 QTAKLWDV-ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred ceeEEEEc-CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999 7899988876 5678999999999998887754 4789999998 3444555544 34455
Q ss_pred EEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 007768 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~ 467 (590)
...|.+.+ ..|++|..+|.|.+||++++ +.+.....|...|+.|+++++..+|+++|.|.+-++||..+...++.+
T Consensus 152 ~a~Wg~l~---~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 152 SALWGPLG---ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeecccC---CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 66666654 68999999999999999998 566677889999999999999999999999999999999999998888
Q ss_pred ecCCCCceeEEEEcCCCCEEEEEEcCCeEEE--EEcCCce---------eecccccccCcccccceEEEEEcCCCCEEEE
Q 007768 468 SEPHMHSMPSISLHPNTNWLAAQSLDNQILI--YSTRERF---------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 468 ~~~~~~~i~~i~~sp~g~~la~~s~dg~I~i--wd~~~~~---------~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
. ...++.+.+++|...+++.|+.....-+ -+.+.++ ....+..+++| -++|++++|+|+|+..++
T Consensus 229 ~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 229 T--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSYSS 304 (327)
T ss_pred e--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCccccc
Confidence 4 5678999999998887777654322222 2222221 01223456777 688999999999999999
Q ss_pred EcCCCcEEEEeCC
Q 007768 537 GDGEGKCWFWDWK 549 (590)
Q Consensus 537 gs~dg~I~iwd~~ 549 (590)
|+.||.|++.-+.
T Consensus 305 GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 305 GGEDGYVRLHHFD 317 (327)
T ss_pred CCCCceEEEEEec
Confidence 9999999987554
No 84
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.8e-24 Score=227.21 Aligned_cols=247 Identities=11% Similarity=0.178 Sum_probs=186.9
Q ss_pred EeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCc--------EEEEecC-CCcc
Q 007768 318 AGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ--------VIRTFST-GKIP 387 (590)
Q Consensus 318 gs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~--------~~~~~~~-~~~~ 387 (590)
|+.++.|++|+. .....+..+.+|...|.+++|+|+ +.+|++|+.|+.|+|||+.++. ++..+.. ...+
T Consensus 50 GG~~gvI~L~~~-~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQ-MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeec-CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 667889999998 455778889999999999999996 7899999999999999998642 1223332 2345
Q ss_pred eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 007768 388 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 388 ~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~ 467 (590)
.++.|+|.. ..++++++.|+.|++||+++++.+..+. |...|.+++|+++|.+|++++.|+.|+|||++++..+..+
T Consensus 129 ~sVaf~P~g--~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMN--YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCC--CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 567777654 3567899999999999999998877775 5678999999999999999999999999999999887766
Q ss_pred ecCCCCceeE-----EEEcCCCCEEEEEEcCC----eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 468 SEPHMHSMPS-----ISLHPNTNWLAAQSLDN----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 468 ~~~~~~~i~~-----i~~sp~g~~la~~s~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
. .|.+.+.+ ..|++++.+|++++.++ .|+|||++...... .....+...+.+......++|.++++|+
T Consensus 206 ~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl--~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 206 H-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL--VTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred e-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce--EEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 4 46554332 23458889999988774 79999998633221 2222222233333344456799999999
Q ss_pred CCCcEEEEeCCCCeEEEEEe--cCCCcEEEEEEcCC
Q 007768 539 GEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEWHPL 572 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~--~h~~~V~~v~~sp~ 572 (590)
.|+.|++|++..+.+ ..+. .+..++.+++|.|.
T Consensus 283 GD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 283 GDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 999999999987743 2232 25567889999994
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=213.70 Aligned_cols=280 Identities=19% Similarity=0.315 Sum_probs=235.9
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
..+|+++...|. ...+++|+.|..+.++|. ...+.+.++.||...|+.+.|+++...+++++.|..|+||......+.
T Consensus 219 ~pgi~ald~~~s-~~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIPS-SSKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCeeEEeecCC-CCcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 356888988887 789999999999999999 688999999999999999999999999999999999999998776654
Q ss_pred EEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC--cCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007768 379 RTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--HLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 379 ~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~--h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..... ...+..+..++.+ .+|++++.|+...+.|++++..+..... ..-.+++..|+|||..|.+|..|+.|+|
T Consensus 297 ~~~~~h~~~V~~ls~h~tg---eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG---EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cccccccccceeeeeccCC---cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 44433 3344556666654 6999999999999999999987776643 2345899999999999999999999999
Q ss_pred EECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007768 456 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
||+..+..+..+. +|.++|..++|+.+|-||++++.|+.|++||++..... +.+.-.. ...+.++.|.+.|.+|+
T Consensus 374 wdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~---kt~~l~~-~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 374 WDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF---KTIQLDE-KKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc---ceeeccc-cccceeEEEcCCCCeEE
Confidence 9999988777775 59999999999999999999999999999999875533 3332222 12477899999999999
Q ss_pred EEcCCCcEEEEeC--CCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 536 SGDGEGKCWFWDW--KSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 536 sgs~dg~I~iwd~--~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.++.+=.|++++- +++.++..+..|.+..+++.|.. ...+++++|.|..++++
T Consensus 449 ~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLY 503 (506)
T ss_pred eecceeEEEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEe
Confidence 9988877777763 36788888888998889999988 67799999999998875
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.6e-24 Score=199.47 Aligned_cols=271 Identities=18% Similarity=0.225 Sum_probs=227.6
Q ss_pred CCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 247 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 326 (590)
Q Consensus 247 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~i 326 (590)
.......-..+.++....|...+.|...+... .. -...+||.+.|-.++|+|....+|++++.|.+|++
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--~~---------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--RK---------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhh--hh---------hhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 34445556666778888899999997655421 11 12456999999999999998999999999999999
Q ss_pred EecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEE
Q 007768 327 WDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 406 (590)
Q Consensus 327 Wd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~ 406 (590)
||+ ..++++.......+. .-+.|+|+|.+++.++.|..|.+.|.++.+.+..........-++|+.++ ++|+...
T Consensus 92 wd~-r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n---d~Fflt~ 166 (313)
T KOG1407|consen 92 WDI-RSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN---DLFFLTN 166 (313)
T ss_pred EEe-ccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC---CEEEEec
Confidence 999 577777766544443 45889999999999999999999999999998888777776667777433 6777778
Q ss_pred CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCE
Q 007768 407 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 407 ~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
..|.|.|......++++.++.|.....||.|+|+|++|++|+.|..+.+||+....+.+.+.. +..+|..+.|+.+|++
T Consensus 167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-ldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-LDWPVRTLSFSHDGRM 245 (313)
T ss_pred CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-ccCceEEEEeccCcce
Confidence 889999999999999999999999999999999999999999999999999999988888875 8889999999999999
Q ss_pred EEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC
Q 007768 487 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 487 la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
||+++.|..|-|=++.++.++..++. .+....++|+|...+||-++.|
T Consensus 246 lASaSEDh~IDIA~vetGd~~~eI~~------~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 246 LASASEDHFIDIAEVETGDRVWEIPC------EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccCccceEEeEecccCCeEEEeec------cCCceeEEecCCCceeeEEecC
Confidence 99999999999999999887755543 4556679999999999877654
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-24 Score=203.91 Aligned_cols=263 Identities=18% Similarity=0.269 Sum_probs=206.3
Q ss_pred EEEEeCCCcEEEEecCCCC-----------eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC
Q 007768 315 ILSAGMDTKVKIWDVVNSG-----------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 315 L~sgs~Dg~I~iWd~~~~~-----------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
|++|+....|.-+++.... .++..+..|.++|++++.+ +.++++||.|-+|+|||+.+...+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 5566666666555552211 2355678899999999994 88999999999999999998887776644
Q ss_pred -CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 007768 384 -GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 384 -~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
...+.++.|.+.... +.|++|+.||.|.+|+....+++..+++|.+.|+.++++|.+++-++.+.|+.+++|++-.++
T Consensus 82 HagsitaL~F~~~~S~-shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSK-SHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred cccceEEEEecCCcch-hheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 345566666665432 469999999999999999999999999999999999999999999999999999999997776
Q ss_pred EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCc
Q 007768 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 542 (590)
Q Consensus 463 ~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~ 542 (590)
.-.... .....+.+.|+|.|.+|+++..+ .|-||.+.+...+..... ...+.++.|- ++..|++|..|+.
T Consensus 161 ~a~v~~--L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~------~~r~l~~~~l-~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 161 VAFVLN--LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN------PKRILCATFL-DGSELLVGGDNEW 230 (362)
T ss_pred cceeec--cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc------cccceeeeec-CCceEEEecCCce
Confidence 554443 23344559999999999887754 589998876443322111 1223334443 5778999999999
Q ss_pred EEEEeCCCCeEEEEEecCCCcEEEEEEcC-CCCCEEEEEeCCCcEEEcC
Q 007768 543 CWFWDWKSCKVFRTLKCHEGVCIGCEWHP-LEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 543 I~iwd~~t~~~~~~l~~h~~~V~~v~~sp-~~~~~l~s~g~Dg~I~iWD 590 (590)
|.+||..+..++..+.+|...|-++.+-- ....+|+|+|.||.|+|||
T Consensus 231 i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99999999999999999999999998432 2567999999999999997
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.1e-24 Score=203.70 Aligned_cols=273 Identities=18% Similarity=0.263 Sum_probs=220.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
...|++|.|+|. +..|+.++.||.+++|++. .. .++....|..++.+++|.+ ...+++|+.||.|+++|+.++...
T Consensus 13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~-~~-~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDVP-AN-SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCc-CCcEEEEeccCcEEEEecc-ch-hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 467999999988 6677777799999999993 33 4444456999999999997 567999999999999999999988
Q ss_pred EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007768 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
..-.+...+.++...+.. ..+++|+.|++|++||.+....+..+.. ...|.++... ++.|++|+.+..|.+||+
T Consensus 89 ~igth~~~i~ci~~~~~~---~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEV---GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred eeccCCCceEEEEeeccC---CeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 888788888888888644 5799999999999999998666666543 3488888875 779999999999999999
Q ss_pred CCCcEEEEe-ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCc-eeecccccccCcc-------cccceEEEEEcC
Q 007768 459 GIPVVIKYI-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER-FQLNKKKRFAGHI-------VAGYACQVNFSP 529 (590)
Q Consensus 459 ~~~~~~~~~-~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~-~~~~~~~~~~~~~-------~~~~v~~v~~sp 529 (590)
++....... .......+.++++-|++.=+++++-||.|.+=.+... ....+...|+.|. ..-+|.+++|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 886544322 2345667999999999888999999999988655543 1122223344442 234688999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
-...|++|+.||.|.+||+.+.+.+..+......|.+++|+. ++..||.++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 999999999999999999999999999887777899999999 7778888764
No 89
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=208.55 Aligned_cols=278 Identities=14% Similarity=0.225 Sum_probs=229.4
Q ss_pred CCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 007768 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~ 325 (590)
......+.-..+|++++..+.+.+.|...... ....+..--..|.-++|+|. ++.|+.|+.||.|.
T Consensus 108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~-------------~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvW 173 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG-------------EQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVW 173 (399)
T ss_pred ceEEEEEccCceEEEecCCCccEEEEEcccCc-------------eEEEeecccCceEEEEeccc-ccEEEeecCCCcEE
Confidence 34445678888999999999999999776543 33444455667889999998 99999999999999
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC--cceEEEEecCCCCCcEEE
Q 007768 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lv 403 (590)
+|.+ ..+...+.+.||+.++++=.|.|+|++++++..||+|++|+..+++++..+.... ...++.+... +..++
T Consensus 174 mw~i-p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~---~~~~~ 249 (399)
T KOG0296|consen 174 MWQI-PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLA---GSTLT 249 (399)
T ss_pred EEEC-CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccc---cceeE
Confidence 9999 4557888999999999999999999999999999999999999999998887433 2334444443 36799
Q ss_pred EEECCCeEEEEeCCCCceEEEEc--------CcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCC
Q 007768 404 AGMSDKKIVQWDMNTKEITQEYD--------QHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 472 (590)
Q Consensus 404 sg~~dg~I~iwD~~t~~~~~~~~--------~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~ 472 (590)
.|..++.+++....+++.+.... .+...+.|+.+.| .-.++++|+-||+|.|||+......... .|.
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he 327 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHE 327 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cCC
Confidence 99999999999999998887766 3444455555544 4567899999999999999877665544 588
Q ss_pred CceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 473 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 473 ~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.+|+.+.|.+ ..+|++++.+|.|+.||.+++... ..+.|| ...|..++++|+++++++++.|+..+||+..
T Consensus 328 ~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~---~~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 328 DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK---FTYTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CceEEEEEcC-cchheeeccCceEEeeeccccceE---EEEecC--chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 8899999998 889999999999999999998665 567788 4568889999999999999999999999864
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.4e-24 Score=203.59 Aligned_cols=295 Identities=16% Similarity=0.271 Sum_probs=217.1
Q ss_pred cCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC----CCeeEEEeccCCCCeEEEEEccCCCEEEEE
Q 007768 286 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN----SGKCMRTYMGHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 286 ~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~----~~~~~~~~~~h~~~V~~l~fspdg~~l~s~ 361 (590)
+.-+-.+.+|+||.+.|++++|+.+ |+.|++++.|++|+||++.. ..++++.-.. -+.-+.+.|+||.+-++..
T Consensus 73 f~Hpl~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 73 FVHPLNVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred cccchhhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEE
Confidence 3334456788999999999999999 99999999999999999942 1123332211 1245789999988766554
Q ss_pred -ecCCeEEEEECCCC---cEEE--------EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC
Q 007768 362 -SYDKNIKYWDTETG---QVIR--------TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL 429 (590)
Q Consensus 362 -s~Dg~I~vWd~~t~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~ 429 (590)
-....+++|.+... .... .|...+...++.+-.- ++..++++++.|..|.+|+++ |+.++.+....
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 44567999976422 1111 1222233333333322 345789999999999999999 99999998877
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCC---C-----cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 430 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---P-----VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~---~-----~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
..-+..+.+|+|+++++++-.--|++|.+-- + ..+.. ..+|...|..++|+++...+++.+.||.++|||+
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe-eccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 7888899999999999999999999998621 1 11112 2468999999999999999999999999999998
Q ss_pred CCceee----cccccc--cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe-cCCCcEEEEEEcCCCC
Q 007768 502 RERFQL----NKKKRF--AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 502 ~~~~~~----~~~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~ 574 (590)
.-.... ..++.. .-+...+..+.+.+||.|+.|+... ...|.++..++|+.+..+. .|...|.+++|++ ++
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g 385 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DG 385 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CC
Confidence 643221 112222 1122234456899999999988765 4479999999998887775 7999999999999 78
Q ss_pred CEEEEEeCCCcEEE
Q 007768 575 SKVATCGWDGLIKY 588 (590)
Q Consensus 575 ~~l~s~g~Dg~I~i 588 (590)
.+++||| |..+++
T Consensus 386 ~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 386 KYIATCG-DRYVRV 398 (420)
T ss_pred cEEeeec-ceeeee
Confidence 8999999 556665
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.4e-25 Score=219.47 Aligned_cols=247 Identities=22% Similarity=0.341 Sum_probs=204.5
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEE
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKY 369 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~v 369 (590)
.++++.-....|+++.|..| |.+|+.|...|.|+|||. .+...++.+.+|+.+|..+.|+| ++..|++|+.|+.+++
T Consensus 60 ~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred hhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 34455567788999999999 999999999999999996 67778899999999999999999 5667888999999999
Q ss_pred EECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007768 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
||+.+......+ .++..++-+....+...+++++|+.||.|++||+++. ..+.++ .|..+|..+.+.|.|..|++++
T Consensus 138 ~d~s~a~v~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 138 WDLSTAYVQAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred EEcCCcEEEEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC
Confidence 999998863344 4444444444444455589999999999999999987 666666 4999999999999999999988
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007768 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
. ..|++||+.++.........|...|+|+++..++..|++++.|+.|++||+.+.+..... ...++|.+++.+
T Consensus 216 G-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~------~~~~pvLsiavs 288 (487)
T KOG0310|consen 216 G-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW------KYPGPVLSIAVS 288 (487)
T ss_pred C-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee------ecccceeeEEec
Confidence 5 679999998666555544458899999999999999999999999999997664443322 225778899999
Q ss_pred CCCCEEEEEcCCCcEEEEeC
Q 007768 529 PDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~ 548 (590)
|+++.++.|-.+|.+.+-+.
T Consensus 289 ~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 289 PDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred CCCceEEEecccceeeeehh
Confidence 99999999999999887744
No 92
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4.7e-25 Score=227.90 Aligned_cols=294 Identities=15% Similarity=0.257 Sum_probs=233.9
Q ss_pred EEecCCCCCeeEEEEcCCC----------CCEEEEEeCCCcEEEEecCC--CCeeEE-----------------------
Q 007768 293 HTWSGHTKGVSAIRFFPKY----------GHLILSAGMDTKVKIWDVVN--SGKCMR----------------------- 337 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~----------g~~L~sgs~Dg~I~iWd~~~--~~~~~~----------------------- 337 (590)
+.+--|+..|+.|.-.|-+ ...+++|+.|++|++|++.. .+...+
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 3444688888888776621 24689999999999999832 001100
Q ss_pred -----------EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEE
Q 007768 338 -----------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAG 405 (590)
Q Consensus 338 -----------~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg 405 (590)
...+....|++++.+|+|++|++|..-|+|+||++...+....+..+ ..+.|+.++...-...+|+++
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence 00123446999999999999999999999999999887776665443 344566666555556789999
Q ss_pred ECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCC--CEEEEEeCCCcEEEEECCCCcEEEEee----cCCCCceeEE
Q 007768 406 MSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSN--RRFVTSSDDKSLRVWEFGIPVVIKYIS----EPHMHSMPSI 478 (590)
Q Consensus 406 ~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~--~~l~s~s~Dg~I~iwdl~~~~~~~~~~----~~~~~~i~~i 478 (590)
+.|..|++||+... .+++++.+|...|+++.|...| ..+++++.|+.|.+--.+.......+. ......+..+
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 99999999999654 7888999999999999999877 789999999988654433222112221 1234468899
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe
Q 007768 479 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 479 ~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
++.|..+++++++.|..|+||++.+++....++.-.+| .+....+...|.|.||++.+.|.+|.|+|+.+|+++..+.
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~--eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH--EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccC--CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 99999999999999999999999998887666665555 5777889999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 559 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 559 ~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+|...|+.+.|.+ +-..|++.+.||+|.||
T Consensus 681 GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLN-DCKHLISVSGDGCIFVW 710 (1080)
T ss_pred Ccchheeeeeecc-cchhheeecCCceEEEE
Confidence 9999999999999 67789999999999999
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.4e-25 Score=228.74 Aligned_cols=314 Identities=18% Similarity=0.300 Sum_probs=240.2
Q ss_pred eecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-eeE
Q 007768 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCM 336 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-~~~ 336 (590)
++-+++.|.++|.|-...... ......+.+++.|+..|+.+...-+ ++.|+|+|.|-+|++|+..... -|+
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~-------~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSN-------EPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred eEEecCCCceEEEeccccccC-------CcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhH
Confidence 677889999999996543221 1222256788999999999999988 8899999999999999994443 788
Q ss_pred EEeccCCCCeEEEEE-ccCCCEEEEEecCCeEEEEECCCC--cEEEEecC--------C--CcceEEEEecCCCCCcEEE
Q 007768 337 RTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETG--QVIRTFST--------G--KIPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 337 ~~~~~h~~~V~~l~f-spdg~~l~s~s~Dg~I~vWd~~t~--~~~~~~~~--------~--~~~~~~~~~~~~~~~~~lv 403 (590)
.++..|...|.|+++ .++..++|+||.|+.|.|||++++ +.+.++.. + ..++.++.++.+ .+|+
T Consensus 111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~---t~iv 187 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG---TIIV 187 (735)
T ss_pred hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc---eEEE
Confidence 899999999999999 778899999999999999999988 33333211 2 233445554433 6899
Q ss_pred EEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC
Q 007768 404 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 404 sg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
+|+..+.|++||.++++.+..+.+|...|.++..+++|.+++++|.||+|++||++...++..+.. |...+.++..+|+
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~e~VWaL~~~~s 266 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HKEGVWALQSSPS 266 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-ccCceEEEeeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999988764 7778999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-------CeEEE-
Q 007768 484 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-------CKVFR- 555 (590)
Q Consensus 484 g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-------~~~~~- 555 (590)
-.++++|+.||.|..=|+++......+..- ..++..+..+.+.+-+.+++.|+.|.-|-..- +.+..
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~-----daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~ 341 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKE-----DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFF 341 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecC-----CCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcc
Confidence 999999999999999999874222111111 12233445554444456777788888886432 11111
Q ss_pred -----------------EEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 556 -----------------TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 556 -----------------~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+.+ ...|...+... +.+.++|=...|.+.+||
T Consensus 342 ~T~~~~~~~~~~~tp~~vi~G-g~ai~k~~mL~-dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 342 STDSNNHSCDLTNTPDSVIPG-GAAIKKHAMLN-DKRHVLTKDAKGNVALWD 391 (735)
T ss_pred cccCCCccccccCCCceeccC-chhhhhhhhhc-CcceEeeecCCCCEEEEE
Confidence 1111 11233344444 678899999999999998
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.7e-25 Score=215.70 Aligned_cols=280 Identities=19% Similarity=0.345 Sum_probs=219.0
Q ss_pred CCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 007768 248 KGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW 327 (590)
Q Consensus 248 ~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iW 327 (590)
+-..+.....+++++..|.+.-.|...+.. -.++.+++.||..+|.-|.|+|+ .++|++|+.|..+.+|
T Consensus 228 Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~----------~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 228 WFLQFSHNGKYLASASKDSTAIIWIVVYDV----------HFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLW 296 (519)
T ss_pred EEEEEcCCCeeEeeccCCceEEEEEEecCc----------ceeeeeeeecccCceEEEEECCC-CCeEEecCchHheeec
Confidence 334566777777888888877777664432 14678999999999999999999 8999999999999999
Q ss_pred ecCCCCeeEEEec-cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCc--ceEEEEecCCCCCcEEEE
Q 007768 328 DVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 328 d~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvs 404 (590)
|+ .++.+...+. +|...+.+++|.|||..|++|+.|+.|..||+... .+.....-.. ...+++.+++ ..+++
T Consensus 297 Dv-~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dg---k~vl~ 371 (519)
T KOG0293|consen 297 DV-DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDG---KYVLL 371 (519)
T ss_pred cC-CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCC---cEEEE
Confidence 99 6777766654 35688999999999999999999999999999743 3333333333 3455555544 56778
Q ss_pred EECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC--ceeEEEEcC
Q 007768 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--SMPSISLHP 482 (590)
Q Consensus 405 g~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~--~i~~i~~sp 482 (590)
.+.|..|++|+..+......+ ....+|++++.+.+++++++.-.+..|++||+.....+..... |.. .+..-||--
T Consensus 372 v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~G-hkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFG-HKQGHFIIRSCFGG 449 (519)
T ss_pred Eecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhc-ccccceEEEeccCC
Confidence 889999999999876554433 3457899999999999999999999999999997766655532 332 233444543
Q ss_pred -CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCC
Q 007768 483 -NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 483 -~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~t 550 (590)
+..++++|+.|+.|+||+..++..+ ..+.|| ...|.+++|+| +-.++|+++.||+|+||-...
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll---~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLL---AVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCcee---EeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 4589999999999999999887655 667888 57799999999 456789999999999997653
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.6e-24 Score=221.76 Aligned_cols=278 Identities=18% Similarity=0.336 Sum_probs=226.5
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCee--EEEeccCCCCeEE-EEEcc-CCCEEEEEecC
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC--MRTYMGHSKAVRD-ISFCN-DGTKFLTASYD 364 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~--~~~~~~h~~~V~~-l~fsp-dg~~l~s~s~D 364 (590)
.++-+.+.||...|..+++.+. -.++++|.||++++|+-. .... ...+.+|.+.|.. +++.+ ++-.|++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEecCC--eEEeecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 3577899999999999988765 589999999999999973 3332 3457778888887 88886 55569999999
Q ss_pred CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007768 365 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
.+|.+|.+....++..+..+.. .+++++...+ ..+++|+.|.++++|-. +++...+.+|...|.++...|++ .+
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~s-nVC~ls~~~~--~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKS-NVCSLSIGED--GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred ceEEEEecCCCCchhhhhcccc-ceeeeecCCc--CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cE
Confidence 9999999999999988865544 4455554433 23899999999999965 45667799999999999999988 99
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007768 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
++||.|++|++|.- +..++.+. +|...|+.+++-+++ .|++++.||.|++|++.. ..+ ..+.+| ..++.+
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-e~l---~~~~gh--tn~vYs 224 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-EVL---LEMHGH--TNFVYS 224 (745)
T ss_pred EeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-cee---eeeecc--ceEEEE
Confidence 99999999999985 55666665 599999999999765 478889999999999944 333 445666 566778
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+...+++..+++++.|++++||+.. .+.+.+......|+++.+.+ ++ -|++|+.||.||||
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-Ng-DIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NG-DIVVGGSDGRVRVF 285 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CC-CEEEeccCceEEEE
Confidence 8888888999999999999999876 77788876666899999887 44 38889999999998
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=5.9e-25 Score=219.40 Aligned_cols=278 Identities=15% Similarity=0.306 Sum_probs=228.1
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--eeEEEec--cCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~--~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
.|..-|.++.++.. .+.++||+. |.|+|||+...+ .++..+. .....|+++.+.|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 68888999999988 788999885 779999995433 2333333 24567999999999999999999999999999
Q ss_pred CCCcEEEEecCCC---cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 373 ETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 373 ~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
......-...... ..+.++++++. ++.++++.||.|.|||+.+..+++.|.+|...+.||.++++|..|.+|+-
T Consensus 495 AapTprikaeltssapaCyALa~spDa---kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDA---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCcc---ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 8665433322221 22345555543 68999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|.+||.||++....+... .....|.++.++|++.+|++|-.++.+.|....... .+.-|.....|.++.|++
T Consensus 572 DntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLHLHESCVLSLKFAY 643 (705)
T ss_pred ccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCcc------ceeecccccEEEEEEecc
Confidence 999999999988766543 356679999999999999999999999998876532 223344477899999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.|+++++.+.|..+..|...-|..+...+ ....|.+|.++. +.++|+||+.|..-.||
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATVY 701 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEEE
Confidence 99999999999999999999888877766 355799999998 77899999999876665
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.6e-25 Score=213.51 Aligned_cols=285 Identities=20% Similarity=0.320 Sum_probs=227.3
Q ss_pred ccCCCCCCcccCCcc-eeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007768 242 GNAGGEKGEHVEDKS-TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s-~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~ 320 (590)
+++.+....+-++.. ....+++.|.++|.|- +-...++.+|+.|.+.|..|++.. ..+++++.
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWn-------------lsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgd 127 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWN-------------LSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGD 127 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEe-------------hhhhhhhheeecccCceeeEEecc---cceEEecC
Confidence 344444444444443 4457889999999994 345567899999999999999975 57899999
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC-cceEEEEecCCCCC
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQ 399 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~ 399 (590)
|.+|+.|.+ .+.+++++.+ ...+..|.-+..+..|+|||. .|.|||.+...+++.+..+. .+.++.++|...
T Consensus 128 DKtvK~wk~--~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-- 200 (433)
T KOG0268|consen 128 DKTVKQWKI--DGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-- 200 (433)
T ss_pred Ccceeeeec--cCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--
Confidence 999999998 4457777764 345777887777889999985 69999999999999887654 456778887654
Q ss_pred cEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEE
Q 007768 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~ 479 (590)
.+|++|.+|+.|.+||++++.++..+. ....-+.|+|+|..-.|++++.|..++.||++...........|.+.|..+.
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred hheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence 789999999999999999998877663 3445688999998889999999999999999887666556667999999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEE
Q 007768 480 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 480 ~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
|+|.|+-|++||.|.+|+||..+.+.......+ . ....|.++.||.|.+||++||.|+.|++|.....+.+
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---k-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---K-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhH---h-hhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999999999876543221111 1 1345778999999999999999999999987654433
No 98
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=212.78 Aligned_cols=299 Identities=16% Similarity=0.224 Sum_probs=220.1
Q ss_pred cceEEEecCCCCCeeEEEEcCCCC-CEEEEEeCCCcEEEEecC---CCCeeEEEeccCCCCeEEEEEcc-CCCEEEEEec
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVV---NSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASY 363 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g-~~L~sgs~Dg~I~iWd~~---~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~ 363 (590)
-.....++-|.+.|++++|+|... +++++|..-|.|-+||+. ....-+..+..|+.+|.+|.|+| +...+++.|+
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 344556677899999999999855 789999999999999993 33445667889999999999999 6678999999
Q ss_pred CCeEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCCC
Q 007768 364 DKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-~~~~~~h~~~V~~i~~~p~~ 441 (590)
||+|++-|++++..-..+.... ......+.....+ ..++.|..=|.+.+||++++.. ...+.-|...|++|+++|..
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 9999999999875443333321 1222222222223 4566666667999999998754 55667788899999999976
Q ss_pred C-EEEEEeCCCcEEEEECCCCcEEE---EeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC---Cceeeccccccc
Q 007768 442 R-RFVTSSDDKSLRVWEFGIPVVIK---YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKRFA 514 (590)
Q Consensus 442 ~-~l~s~s~Dg~I~iwdl~~~~~~~---~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~---~~~~~~~~~~~~ 514 (590)
. +|+++|.|++++|||++...... ....+|...|.+..|+|.+..|++.+.|+.|+|||.. ....... ....
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~-~I~H 413 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG-TIPH 413 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc-eeec
Confidence 5 68899999999999997643222 2223799999999999998889999999999999984 1111110 0111
Q ss_pred Ccccc--cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCC-cEEE-EEEcCCCCCEEEEEeCCCcEEEc
Q 007768 515 GHIVA--GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG-VCIG-CEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 515 ~~~~~--~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~-~V~~-v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.+... -......|.|+..+|++|..-..|-|+|-..++++..+..... .|.+ ..|||.+..+++-++..|.|.||
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 11111 1233478999999999999999999999999998887754433 4444 48999544456666678889888
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.1e-25 Score=227.06 Aligned_cols=285 Identities=21% Similarity=0.355 Sum_probs=227.4
Q ss_pred CCCCCee---EEEEcCCCCCEEEEEeCCCcEEEEecCCCCe-----eEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 297 GHTKGVS---AIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-----CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 297 gH~~~V~---~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-----~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
.|...|. .+..+..++++|+|||.||.|++|++..... .+..+..|...|+++....+++.|++||.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3445555 5666666688999999999999999854333 4777889999999999999999999999999999
Q ss_pred EEECCCC--cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC--ceEEE--------Ec-CcCCceeEE
Q 007768 369 YWDTETG--QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQE--------YD-QHLGAVNTI 435 (590)
Q Consensus 369 vWd~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~--~~~~~--------~~-~h~~~V~~i 435 (590)
+|+...+ -++.++.. |..++-++.+...+..++++|+-|+.|.+||++++ +++.. +. ++..+|.++
T Consensus 99 ~W~~~~~~~~c~stir~-H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRT-HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EeecccCcchhHhhhhc-ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 9999877 45555533 33444444443344578999999999999999987 23322 22 678899999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC
Q 007768 436 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 436 ~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~ 515 (590)
+.++.+..|++|+..+.|++||.++...+..+. +|...|.++..+++|..++++++||+|++||+....++.. +..
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T---~~v 253 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT---YIV 253 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee---EEe
Confidence 999999999999999999999999998888887 7999999999999999999999999999999988766643 444
Q ss_pred cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 516 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
| ...+.++..+|+=..+++|+.||.|+.=|+.+......+-....+|..+..+.++.. +-++..|+.|+-|
T Consensus 254 H--~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~-~WvtTtds~I~rW 324 (735)
T KOG0308|consen 254 H--KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNS-VWVTTTDSSIKRW 324 (735)
T ss_pred c--cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCC-ceeeeccccceec
Confidence 5 344888999999999999999999999999885433333334556777777754444 3666778888887
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=9.2e-23 Score=206.78 Aligned_cols=269 Identities=17% Similarity=0.202 Sum_probs=201.5
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEE-EEEecCCeEEEEECCCCcEEEEecCCCcceEEE
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
.++++++.|+.|++||+ .+++++..+..+. .+.+++|+|++..+ ++++.++.|++||+.+++.+..+..+..+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~-~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDT-ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEEC-CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 57889999999999999 5677788877654 47889999999876 566788999999999999888776655566666
Q ss_pred EecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC-cEEEEECCCCcEEEEeecC
Q 007768 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg-~I~iwdl~~~~~~~~~~~~ 470 (590)
+.+++ ..+++++..++.|++||+++++.+..+.. ...+.++.|+|++.++++++.++ .+.+||..+......+.
T Consensus 80 ~~~~g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-- 154 (300)
T TIGR03866 80 LHPNG--KILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-- 154 (300)
T ss_pred ECCCC--CEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--
Confidence 66654 24455566789999999999887777653 34568899999999999988775 46778988776665543
Q ss_pred CCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeccccccc-C-cccccceEEEEEcCCCCEEEEE-cCCCcEEEE
Q 007768 471 HMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFA-G-HIVAGYACQVNFSPDGRFVMSG-DGEGKCWFW 546 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~-~-~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iw 546 (590)
....+.+++|+|++.+|++++ .++.|.+||+.+...+....... + +........++|+|+|++++++ ..++.|.+|
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 233457899999999886554 68999999998765443322110 0 1011223468899999986554 456789999
Q ss_pred eCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEE-eCCCcEEEcC
Q 007768 547 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 590 (590)
Q Consensus 547 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~-g~Dg~I~iWD 590 (590)
|..+++.+..+. +...+.+++|+| ++.+|+++ +.+|.|++||
T Consensus 235 d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 235 DAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEE
Confidence 999998877664 445789999999 55666665 5799999997
No 101
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=3.8e-25 Score=203.65 Aligned_cols=243 Identities=17% Similarity=0.365 Sum_probs=212.5
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007768 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~D 321 (590)
+++|..+........+..++...|..++.|-+... ..+++| .|..-|.+++|+.+ .++|++|+.+
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tg-------------delhsf-~hkhivk~~af~~d-s~~lltgg~e 121 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG-------------DELHSF-EHKHIVKAVAFSQD-SNYLLTGGQE 121 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhh-------------hhhhhh-hhhheeeeEEeccc-chhhhccchH
Confidence 34455555555566666677888999999966443 334555 58888999999999 8999999999
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcE
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
..++|||+.....+...+.+|.+.|+.+.|....+.|++++.|++||+||.+++..++++...+.+.++.++.++.
T Consensus 122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~---- 197 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR---- 197 (334)
T ss_pred HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC----
Confidence 9999999977777888999999999999999999999999999999999999999999999999999999998775
Q ss_pred EEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEc
Q 007768 402 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 481 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~s 481 (590)
+++-...+.|.+||..+..++..++. ...|.+..++|+...|++|+.|..++.||+.++..+.....+|.++|.|+.|+
T Consensus 198 ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 198 ILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS 276 (334)
T ss_pred EEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence 77777788999999999998888863 45789999999999999999999999999999999888767899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCc
Q 007768 482 PNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 482 p~g~~la~~s~dg~I~iwd~~~~ 504 (590)
|+|...++|+.||+|++|.+..+
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCCceeeccCCCceEEEEEecCC
Confidence 99999999999999999987654
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.5e-23 Score=218.30 Aligned_cols=296 Identities=21% Similarity=0.342 Sum_probs=243.5
Q ss_pred CCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCE-EEEE
Q 007768 283 DHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTK-FLTA 361 (590)
Q Consensus 283 ~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~-l~s~ 361 (590)
.|++-..+++++|+++...|+++.=+|- -..++.|..+|+|.|+++ ..++.+.+++...+.|+.++|..||+. +++|
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNl-K~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNL-KFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEc-ccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 4577788999999999999999999998 889999999999999999 688888888765799999999999975 4566
Q ss_pred ecCCeEEEEECCCCcEEEEecCC------------------------------------------------CcceEEEEe
Q 007768 362 SYDKNIKYWDTETGQVIRTFSTG------------------------------------------------KIPYVVKLN 393 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~------------------------------------------------~~~~~~~~~ 393 (590)
+..|.+.+||++..+.+...... .++.++.+.
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 66699999999743322111000 000011110
Q ss_pred --------------------------------------------------------------------------------
Q 007768 394 -------------------------------------------------------------------------------- 393 (590)
Q Consensus 394 -------------------------------------------------------------------------------- 393 (590)
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence
Q ss_pred -----cC--------------------------CCCCcEEEEEECCCeEEEEeCCCCceEEEE---cCcCCceeEEEEeC
Q 007768 394 -----PD--------------------------DDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVD 439 (590)
Q Consensus 394 -----~~--------------------------~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~---~~h~~~V~~i~~~p 439 (590)
.. ..-+++.+.|.+.|.|-+|++.+|-....| ..|.++|+.++...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 00 001355778888999999999999888888 58999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
-++.+++++.+|.+.+||+.....+..+. ...+++++..+.....++++..|-.|+++|..+.... ..+.|| .
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv---R~f~gh--~ 576 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV---REFWGH--G 576 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh---HHhhcc--c
Confidence 89999999999999999999988777774 5668899999999999999999999999999875443 567777 5
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCC-CcEEEc
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD-GLIKYW 589 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D-g~I~iW 589 (590)
..++.++|||||++|++++.|++|++||+.++.++-.+. -..+++++.|+| ++.+|||...| .-|++|
T Consensus 577 nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP-ngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 577 NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP-NGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC-CCCEEEEEEecCceEEEE
Confidence 779999999999999999999999999999999998886 456789999999 88899999998 569998
No 103
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3.1e-24 Score=208.37 Aligned_cols=239 Identities=20% Similarity=0.334 Sum_probs=195.9
Q ss_pred cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC
Q 007768 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~ 419 (590)
.|...|.++... +.+|++|++||.+++||.. |+++..+..+. ....+.+...+.....|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488888888887 7799999999999999976 66666665543 4444555555555568999999999999998876
Q ss_pred ce----EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-------------------------CcEEEEeecC
Q 007768 420 EI----TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-------------------------PVVIKYISEP 470 (590)
Q Consensus 420 ~~----~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-------------------------~~~~~~~~~~ 470 (590)
+. +....+|...|-++...+++.+|++||.|.+|.||+... ..++. ...+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v-tl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV-TLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE-Eecc
Confidence 43 333459999999999999999999999999999999321 11222 2347
Q ss_pred CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
|..+|.++.|++ ...+++++.|.+|+.||+.++.....+.. ...+.++.++|..++|++|+.|..|++||.++
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec------CcceeEeecccccceeeecCCCCceeecCCCC
Confidence 999999999998 77899999999999999988765543332 34567899999999999999999999999987
Q ss_pred Ce---EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 551 CK---VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 ~~---~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+. ...+|.+|.+-|.++.|+|.+..+|++++.|+++++||
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 53 46788899999999999999899999999999999998
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=199.45 Aligned_cols=249 Identities=21% Similarity=0.363 Sum_probs=200.3
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--eeEEEeccCCCCeEEEEEcc--CCCEEEEEecCCeEEEEE
Q 007768 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd 371 (590)
..|...|..+...-- |.+|+||+.|++|+|+.+.+.+ .++.++.||.++|..++|.. .|.+|++|++||.|.||.
T Consensus 8 t~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 478888888777666 8999999999999999997766 68889999999999999977 899999999999999999
Q ss_pred CCCCcEEEEec---CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCC---C-
Q 007768 372 TETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDS---N- 441 (590)
Q Consensus 372 ~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~---~~~~~~~~h~~~V~~i~~~p~---~- 441 (590)
-+.++-.+... ......++++.|+.. +.+|+++++||.|.+++.+.. ........|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred cCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 98885433222 244567888888864 478999999999999998764 223345679999999999986 4
Q ss_pred ----------CEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCceeEEEEcCCC----CEEEEEEcCCeEEEEEcCCcee
Q 007768 442 ----------RRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNT----NWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 442 ----------~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g----~~la~~s~dg~I~iwd~~~~~~ 506 (590)
++|++|+.|..|+||+.....-+ ......|..-|+.++|.|.- .+|++++.||++.||..+....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 57999999999999999875322 12234689999999999964 5799999999999998774322
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
......+.. ....+..+.||..|++|++++.|..|.+|.-
T Consensus 246 ~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 246 PWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 222222322 2456888999999999999999999999964
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-23 Score=221.42 Aligned_cols=274 Identities=17% Similarity=0.301 Sum_probs=216.7
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 376 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~ 376 (590)
+|+.+-+.|+|.|+ |.+|++|+.||.|++|+.......-.++.-+...|.+++.. +++|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 79999999999999 88999999999999999844434444444477888887774 5599999999999999998776
Q ss_pred EE---EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcE
Q 007768 377 VI---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSL 453 (590)
Q Consensus 377 ~~---~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I 453 (590)
.- ..|. -+..++++.-++ .++++|+.|-.|++.++.+......+.+|.++|.++.|+|.+++|++.+.||.|
T Consensus 88 ~~~iL~Rft--lp~r~~~v~g~g---~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 88 EDTILARFT--LPIRDLAVSGSG---KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred ccceeeeee--ccceEEEEecCC---cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence 43 3333 344566666544 689999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeecC-------CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEE
Q 007768 454 RVWEFGIPVVIKYISEP-------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~-------~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
++||+..+.....+... ....+..++|+|++..|++.+.|+.|.+|+..+...... +........++.++
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~---Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK---LRDKLSSSKFSDLQ 239 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee---ecccccccceEEEE
Confidence 99999987766655321 134567899999999999999999999999988765533 33333344488899
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 527 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
|||+|.|||+++.+|.|.|||+.+-.. .-....|++++|.|+.+ .+-....-|..
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n-~it~~~~~g~~ 294 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN-AITLITALGTL 294 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC-eeEEEeecccc
Confidence 999999999999999999999998222 12235799999999544 33333334433
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=214.67 Aligned_cols=250 Identities=20% Similarity=0.371 Sum_probs=208.2
Q ss_pred CccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec
Q 007768 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 284 ~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~ 363 (590)
|.+.++...+..---.++|.||+-+|. |.+|+.|+..|.|++|.+ .+|.++..+..|-..|+|+.|+.||.+|+|||.
T Consensus 66 w~i~k~~~~~q~~v~Pg~v~al~s~n~-G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 66 WEILKKDQVVQYIVLPGPVHALASSNL-GYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred cccCchhhhhhhcccccceeeeecCCC-ceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 444444444433344678999999999 999999999999999999 799999999999999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC--C
Q 007768 364 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--N 441 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~--~ 441 (590)
||.|.+|.+.. ++....++ +-++...+..|.-+|+++...+. .
T Consensus 144 Dg~V~vW~l~~---------------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~ 188 (476)
T KOG0646|consen 144 DGAVLVWLLTD---------------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTN 188 (476)
T ss_pred CccEEEEEEEe---------------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCcc
Confidence 99999998631 33333332 34567778889999999988764 4
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce-------------eec
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF-------------QLN 508 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~-------------~~~ 508 (590)
.+++++|.|.++++||+..+..+..+. ...++.+++++|.+..+++|+.+|.|.+.++.... ...
T Consensus 189 ~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 189 ARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred ceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 589999999999999999999888885 55689999999999999999999999998875322 112
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCC
Q 007768 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 572 (590)
....+.||.....|+|++++-||.+|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 3455778876678999999999999999999999999999999999999877789999999664
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=4.7e-24 Score=211.91 Aligned_cols=254 Identities=19% Similarity=0.325 Sum_probs=200.9
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe---------eEEEeccCCCCeEEEEEcc-CCCEEEEEecCC
Q 007768 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---------CMRTYMGHSKAVRDISFCN-DGTKFLTASYDK 365 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~---------~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg 365 (590)
--|.+.|+.+++-|++..++++++..+.|.|||...... +-..+.+|.+.-.+|+|++ ..-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 469999999999999899999999999999999843221 2226778888777888888 334778888888
Q ss_pred eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC-CEE
Q 007768 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN-RRF 444 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~-~~l 444 (590)
.|++||+...... + ..-.....+.+|...|..++|++-. ..|
T Consensus 201 ~i~lwdi~~~~~~-----------------------------~--------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 201 TICLWDINAESKE-----------------------------D--------KVVDPKTIFSGHEDVVEDVAWHPLHEDLF 243 (422)
T ss_pred cEEEEeccccccC-----------------------------C--------ccccceEEeecCCcceehhhccccchhhh
Confidence 8888887642211 0 0012345567899999999999854 578
Q ss_pred EEEeCCCcEEEEECCC-CcEEEEeecCCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007768 445 VTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
+++++|+.+.|||+++ ..........|...+.|++|+|- +.+||+|+.|++|.+||+++... .+..+.+| ...|
T Consensus 244 ~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H--~dev 319 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGH--EDEV 319 (422)
T ss_pred eeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCC--Ccce
Confidence 8999999999999996 33333344578999999999995 56789999999999999998544 46677777 5778
Q ss_pred EEEEEcCC-CCEEEEEcCCCcEEEEeCCCC--------------eEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 523 CQVNFSPD-GRFVMSGDGEGKCWFWDWKSC--------------KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 523 ~~v~~spd-g~~l~sgs~dg~I~iwd~~t~--------------~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
.+|.|||+ ...|++++.|+.+.+||+..- +++..-.+|...|..+.|+|.....|+|++.|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 99999996 557888999999999998642 234555689999999999999999999999999999
Q ss_pred EcC
Q 007768 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
||.
T Consensus 400 IW~ 402 (422)
T KOG0264|consen 400 IWQ 402 (422)
T ss_pred Eee
Confidence 995
No 108
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-23 Score=218.62 Aligned_cols=255 Identities=21% Similarity=0.312 Sum_probs=211.0
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc-CCCCeEEEEEccCCCEEEEEec
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspdg~~l~s~s~ 363 (590)
+.....+......+...|+++.|+++ |.+|++|..+|.|.|||. ...+.++.+.+ |...|-+++|+ +..+.+|+.
T Consensus 203 ~~~s~~v~~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~-~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr 278 (484)
T KOG0305|consen 203 SASSGSVTELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDV-KEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR 278 (484)
T ss_pred ecCCCceEEeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEeh-hhccccccccCCcCceeEEEecc--CceEEEecC
Confidence 33444444555555899999999999 999999999999999999 67788888888 99999999998 678999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CC
Q 007768 364 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NR 442 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~-~~ 442 (590)
|+.|..+|++..+.......+|...++.+.+..+ ..++++|+.|+.+.|||....++...+..|..+|..++|+|- ..
T Consensus 279 ~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred CCcEEEEEEecchhhhhhhhcccceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccC
Confidence 9999999999887665533344444444444332 378999999999999999888999999999999999999995 45
Q ss_pred EEEEE--eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEE--EcCCeEEEEEcCCceeecccccccCccc
Q 007768 443 RFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 443 ~l~s~--s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
.||+| +.|+.|++||..++..+..+. ....|.++.|++..+-|+++ ..++.|.||+..+. .....+.+|
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH-- 430 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGH-- 430 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCC--
Confidence 67776 469999999999999888873 56789999999998777664 45688999999873 445667788
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
...|..+++||||..|++|+.|.+++||++-..
T Consensus 431 ~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 431 TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466999999999999999999999999998664
No 109
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=5.6e-24 Score=218.33 Aligned_cols=278 Identities=18% Similarity=0.360 Sum_probs=214.2
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCC-----eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE--e-
Q 007768 310 KYGHLILSAGMDTKVKIWDVVNSG-----KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--F- 381 (590)
Q Consensus 310 ~~g~~L~sgs~Dg~I~iWd~~~~~-----~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~--~- 381 (590)
...++|+.+..||.|.++|..... ..+..+..|...|.++.|.|....|++++.|.++++||+.++.++.. +
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 346899999999999999983211 12455678999999999999777999999999999999999988765 2
Q ss_pred cCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce---------------------------EEEEcCcCCceeE
Q 007768 382 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---------------------------TQEYDQHLGAVNT 434 (590)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~---------------------------~~~~~~h~~~V~~ 434 (590)
.+......++|.+.+ ...|++|+.||.|.|||++-... +.....+...|.+
T Consensus 142 GH~~SvkS~cf~~~n--~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTN--PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ccccccchhhhccCC--CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 222344566777654 47999999999999999973220 1111234444444
Q ss_pred ---EEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEeec----------CCCCceeEEEEcCCCCEEEEEEcCCeEEEEE
Q 007768 435 ---ITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISE----------PHMHSMPSISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 435 ---i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~~~~~~~~----------~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd 500 (590)
+.+..|...|++++. |+.|+|||++.......... .....+.++.....|.+|++.+.|+.|++|+
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 555567788998887 99999999987654433211 1134578888888899999999999999999
Q ss_pred cCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE-EEEEecCCCcEEEEEEcCCCCCEEEE
Q 007768 501 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
+... .+.....+.++.....-..-..+||+.+|++|+.|...++|.+.+... ...+.+|.-.|++++|.|-...-++|
T Consensus 300 m~s~-s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 300 MRSL-SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred cccc-CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 9764 334455666666555555677899999999999999999999988654 56677999999999999976778999
Q ss_pred EeCCCcEEEcC
Q 007768 580 CGWDGLIKYWD 590 (590)
Q Consensus 580 ~g~Dg~I~iWD 590 (590)
|+.|..++||+
T Consensus 379 cSdD~~~kiW~ 389 (720)
T KOG0321|consen 379 CSDDFRVKIWR 389 (720)
T ss_pred eccCcceEEEe
Confidence 99999999996
No 110
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.2e-24 Score=226.79 Aligned_cols=254 Identities=16% Similarity=0.325 Sum_probs=211.9
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCc----------------------------cc-----------cccC
Q 007768 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPK----------------------------DA-----------KAAN 282 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~----------------------------~~-----------~~~~ 282 (590)
.+.|.++..++....-|+++++.|..+|+|..... .. +...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 67788999999999999999999999999965540 00 0001
Q ss_pred CCc--------cCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc-
Q 007768 283 DHC--------YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN- 353 (590)
Q Consensus 283 ~~~--------~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp- 353 (590)
..| .+..++++.|.||.+.|..|.|+.+ ++|+++++|.+|+||++ ....|+++|. |..-|+||+|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~-~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHP-GRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecC-CCcceeeEEe-cCCeeEEEEeccc
Confidence 122 1335688999999999999999987 79999999999999999 6788999884 999999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC--c---
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--H--- 428 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~--h--- 428 (590)
|.++|++|+-||.|+||++...+++.-......+..+++.|++ ...++|+.+|.+++|++...++.....- |
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG---k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG---KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC---ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 8899999999999999999999999888888999999999975 6799999999999999998876655421 1
Q ss_pred ---CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCC-CCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 429 ---LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 429 ---~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
...|+.+.|.|... .+++++.|..|+|||++....+..+...+ ...-....|+.+|++|++++.|..|+||+..
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 22799999997543 68889999999999998777776665433 3345677899999999999999999999974
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.9e-23 Score=195.76 Aligned_cols=267 Identities=14% Similarity=0.272 Sum_probs=208.8
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCC--EEEEEe
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT--KFLTAS 362 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~--~l~s~s 362 (590)
+-..-..+..+..|.++|++++.+ +.+++|||.|-+|+|||+ .....+..+..|.+.|+++.|.+.-. .|++|+
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm-~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDM-RKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred cceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEec-cchhhhcceeccccceEEEEecCCcchhheeeec
Confidence 333445578889999999999996 889999999999999999 67778888889999999999998654 899999
Q ss_pred cCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 363 YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
.||.|.+|+.....++..+..+ +.+..+.++|.+ .+.++.+.|+.+++||+-.|+.-..+.- ....+.+.|+|.|
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~---KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~G 180 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG---KLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQG 180 (362)
T ss_pred CCCcEEEEEcCCeEEeeeecccccccceeEecCCC---ceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCC
Confidence 9999999999999999988764 345667777765 6889999999999999988875554432 2223449999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
.+|+.++.++ |-+|.+........+..+ ..+.++.|. ++..|++|..|+.|.+||..+... ...+.+|. ..
T Consensus 181 d~F~v~~~~~-i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~---~~~~~AH~--~R 251 (362)
T KOG0294|consen 181 DHFVVSGRNK-IDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTP---LTEFLAHE--NR 251 (362)
T ss_pred CEEEEEeccE-EEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCcc---ceeeecch--hh
Confidence 9999998765 889999887776666433 345666665 577899999999999999987443 34566663 34
Q ss_pred eEEEE--EcCCCCEEEEEcCCCcEEEEeCCCC-----eEEEEEecCCCcEEEEEE
Q 007768 522 ACQVN--FSPDGRFVMSGDGEGKCWFWDWKSC-----KVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 522 v~~v~--~spdg~~l~sgs~dg~I~iwd~~t~-----~~~~~l~~h~~~V~~v~~ 569 (590)
|-.+. -.|++.||+++++||.|++||+... +++..+.. ...++|+..
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 44454 3678899999999999999999765 45555554 334555544
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=2.9e-24 Score=215.34 Aligned_cols=253 Identities=18% Similarity=0.262 Sum_probs=194.1
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE----EEEec--CCCcceEEEEecCCCCCcEEEEEEC
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV----IRTFS--TGKIPYVVKLNPDDDKQNILLAGMS 407 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~----~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~ 407 (590)
..-..+.+|+..|.++++.|.|..|++|+.|-+|++||+..... .+.+. ..+.+.++.+++.+ ..|++.+.
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg---~~iLvvsg 234 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG---DQILVVSG 234 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC---CeEEEEec
Confidence 34456778999999999999999999999999999999975432 22222 24667788888755 46777777
Q ss_pred CCeEEEEeCCCCceEEE------------EcCcCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEee-----c
Q 007768 408 DKKIVQWDMNTKEITQE------------YDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYIS-----E 469 (590)
Q Consensus 408 dg~I~iwD~~t~~~~~~------------~~~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~-----~ 469 (590)
....+++|-...+.+.. .++|...++|.+|+|..+ .|++++.||+++|||+...+....+. .
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 88899999664443332 257999999999999765 79999999999999997654322221 2
Q ss_pred CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 470 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
+..-++++++|++++++||+|+.||.|.+|+..+...-.....-..|.....|++|.||+||++|++-+.|+++++||++
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 34557899999999999999999999999998765544444555667666689999999999999999999999999998
Q ss_pred CC-eEEEEEecCC--CcEEEEEEcCCCCCEEEEEeC------CCcEEEcC
Q 007768 550 SC-KVFRTLKCHE--GVCIGCEWHPLEQSKVATCGW------DGLIKYWD 590 (590)
Q Consensus 550 t~-~~~~~l~~h~--~~V~~v~~sp~~~~~l~s~g~------Dg~I~iWD 590 (590)
.. +++....+-. -+-+.|+|+| +..+|+||.. -|++.+||
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEe
Confidence 75 4555554322 3557899999 6778888864 35566654
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-22 Score=182.57 Aligned_cols=254 Identities=20% Similarity=0.298 Sum_probs=202.3
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe-----eEEEeccCCCCeEEEEEcc----CCCE
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-----CMRTYMGHSKAVRDISFCN----DGTK 357 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-----~~~~~~~h~~~V~~l~fsp----dg~~ 357 (590)
.|.-+.+.-+.|.+.|+|.+|+|. |.+|++|+.|.+|++.-+. ... .-..+.-|.+.|++++|-. .|..
T Consensus 77 pp~v~~kr~khhkgsiyc~~ws~~-geliatgsndk~ik~l~fn-~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 77 PPSVLCKRNKHHKGSIYCTAWSPC-GELIATGSNDKTIKVLPFN-ADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred CCeEEeeeccccCccEEEEEecCc-cCeEEecCCCceEEEEecc-cccccccCcceeeeecCCceeeeEEecCCCcCceE
Confidence 344455556778999999999999 9999999999999998763 222 2234667999999999965 3557
Q ss_pred EEEEec-CCeEEEEECCCCcEEEEecCCCcceEEEE-ecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC-------c
Q 007768 358 FLTASY-DKNIKYWDTETGQVIRTFSTGKIPYVVKL-NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------H 428 (590)
Q Consensus 358 l~s~s~-Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~-------h 428 (590)
|++++. |..|.+-|..+|+....+..+. ..++++ .+++ -+|++|+.|.+|++||++-..++..+.. .
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sght-ghilalyswn~---~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHT-GHILALYSWNG---AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCc-ccEEEEEEecC---cEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 777654 6788888999999988886543 344443 4433 6899999999999999999888877642 2
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee-
Q 007768 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL- 507 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~- 507 (590)
...|.+++..|.|++|++|-.|.+..+||++.+..++.+. +|...|.++.|+|...|+++++.|..|++-|+.....-
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence 3579999999999999999999999999999999998875 69999999999999999999999999999998653211
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 508 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
........| ...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 310 l~~~vv~eh--kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 310 LPIMVVAEH--KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEec--cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 111222333 4556779999999899999999999999753
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.4e-23 Score=206.79 Aligned_cols=243 Identities=19% Similarity=0.394 Sum_probs=197.5
Q ss_pred cCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 286 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 286 ~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
+.|.+.-+ ++|.+.|.+++.+++ +++|++|+.|..|.||+. .+.+.+..+.+|.+.|.+++|-.....|++++.|+
T Consensus 191 ~~~~k~~r--~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~-~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 191 GNPLKESR--KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDC-DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred cCCCCccc--ccccceeEEEEEcCC-CcEEEecCCCceEEEecC-cccchhhcccccccceeeeeeecCccceeeeecCC
Confidence 44444443 599999999999999 999999999999999999 78899999999999999999999888999999999
Q ss_pred eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007768 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
.|++|+++....+.++.. |...+..+.... ....+.+|+.|+++++|++. .+....+.+|.+.+-|++|..+ ..|+
T Consensus 267 svkvw~~~~~s~vetlyG-Hqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~Hfv 342 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYG-HQDGVLGIDALS-RERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFV 342 (479)
T ss_pred ceEEEehhHhHHHHHHhC-Cccceeeechhc-ccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-ccee
Confidence 999999998777766643 333344444332 34677788899999999994 3344566788999999999854 5899
Q ss_pred EEeCCCcEEEEECCCCcEEEEeecCCC-----------CceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007768 446 TSSDDKSLRVWEFGIPVVIKYISEPHM-----------HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~~~~~~~~~~~~-----------~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
+||++|.|.+|++-..+++.....+|. ..|++++..|..+++++|+.+|.|++|-+..+.+. +..+.
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~--i~~l~ 420 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA--INLLY 420 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc--cceee
Confidence 999999999999988887766654332 26889999999999999999999999999877432 23333
Q ss_pred CcccccceEEEEEcCCCCEEEEEc
Q 007768 515 GHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
.-...+.|++++|+++|++|++|.
T Consensus 421 ~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 421 SLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ecccccEEEEEEEccCCCEEEEec
Confidence 333578899999999999877774
No 115
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=6.3e-23 Score=222.94 Aligned_cols=289 Identities=17% Similarity=0.262 Sum_probs=224.5
Q ss_pred cCCcceeecccc--cccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 007768 252 VEDKSTFHGKEE--TDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 252 ~~~~s~~~~~~~--~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
.++.-.-.++++ .|...|.|-..+-..... .++..-++.+.+...|.+.|+|++|+|+ |.+||+|+.|+.|.||..
T Consensus 21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~-~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE-EKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWER 98 (942)
T ss_pred ecCCceeEecCCccccccceeeccccccchhh-hhhcccchhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeee
Confidence 344444446666 788888997766543221 2233245667788899999999999999 999999999999999997
Q ss_pred CC-----------------CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCc-ceEEE
Q 007768 330 VN-----------------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVK 391 (590)
Q Consensus 330 ~~-----------------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~~~~~ 391 (590)
.. ..+++..+.+|...|.+++|+|++.+|++++.|++|.||+..+.+.+..+..+.. +.-+.
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs 178 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS 178 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceE
Confidence 41 1247788999999999999999999999999999999999999988887765432 33455
Q ss_pred EecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC------ceeEEEEeCCCCEEEEEeC----CCcEEEEECCCC
Q 007768 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG------AVNTITFVDSNRRFVTSSD----DKSLRVWEFGIP 461 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~------~V~~i~~~p~~~~l~s~s~----Dg~I~iwdl~~~ 461 (590)
|.|.+ .+|++-+.|++|++|++.+-.+...+..+.. -+..+.|+|+|.+|++.-. -.++.|.+-.+-
T Consensus 179 ~DP~G---ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW 255 (942)
T KOG0973|consen 179 WDPIG---KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW 255 (942)
T ss_pred ECCcc---CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCc
Confidence 65544 7999999999999999887767776655443 4678999999999998632 346777776655
Q ss_pred cEEEEeecCCCCceeEEEEcCC-------------CC----EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007768 462 VVIKYISEPHMHSMPSISLHPN-------------TN----WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~-------------g~----~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
..-..+. +|..++.++.|+|. .. .+|+|+.|+.|.||......++.....+. ...|..
T Consensus 256 k~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf----~~SI~D 330 (942)
T KOG0973|consen 256 KVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF----NKSIVD 330 (942)
T ss_pred eeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh----cCceee
Confidence 5444444 68889999999981 11 68899999999999986655554433332 456889
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 525 VNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
++|+|||..|++++.||+|.++.+..
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcch
Confidence 99999999999999999999999865
No 116
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.1e-23 Score=210.44 Aligned_cols=292 Identities=21% Similarity=0.345 Sum_probs=224.6
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCC-EEEEEec
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASY 363 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~ 363 (590)
.-+|..+-..++||++.|.||...|. |.+|++|+.||+|+||.+ .++.|++++. ..+.|.||+|+|.+. .++.+..
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi-~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEI-ATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEe-ecceEEEEEe-ecceeEEEEecCCCCceeEEEEe
Confidence 44677888899999999999999997 999999999999999999 7999999886 455899999999654 3333344
Q ss_pred CCeEEEEECCCCc--------------------------------------EEEEecCCCcceEEEEecCCCCCcEEEEE
Q 007768 364 DKNIKYWDTETGQ--------------------------------------VIRTFSTGKIPYVVKLNPDDDKQNILLAG 405 (590)
Q Consensus 364 Dg~I~vWd~~t~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~lvsg 405 (590)
..++.|-+..-|. +...+.....+..+.|+.. +.+|++.
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk---GDYlatV 539 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK---GDYLATV 539 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC---CceEEEe
Confidence 4445555433221 1112223334444555543 3577776
Q ss_pred EC---CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC
Q 007768 406 MS---DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 406 ~~---dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp 482 (590)
+. ...|.|+++.......-|....+.|.++.|+|...+|++++. ..|+|||+.....++.+.. ....|.++++||
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-g~kwiS~msihp 617 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-GSKWISSMSIHP 617 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-CCeeeeeeeecC
Confidence 55 357889999877666666667788999999999999888875 6799999988776666643 556789999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC------C---CeE
Q 007768 483 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK------S---CKV 553 (590)
Q Consensus 483 ~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~------t---~~~ 553 (590)
.|..|++++.|+.+..||+.-... ..+.+.-| ...+++++|++.-.++++|+.||.+.|+.-. . --+
T Consensus 618 ~GDnli~gs~d~k~~WfDldlssk--Pyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSK--PYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcc--hhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 999999999999999999975432 34455555 4567889999999999999999999998521 1 235
Q ss_pred EEEEecCCCc----EEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 554 FRTLKCHEGV----CIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 554 ~~~l~~h~~~----V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+..+++|... |..+.||| ...+|+++|.||+|++|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 6778888765 89999999 67899999999999998
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1e-22 Score=192.57 Aligned_cols=238 Identities=20% Similarity=0.304 Sum_probs=187.1
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCC-CcEEEEecC--CCcceEEEEecCCCCCcEEEEEECCCeEEEEeC
Q 007768 341 GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET-GQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 341 ~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 416 (590)
.....|.+|+||| ...+|+.+|.||+||+|+++. |..+..... ..++.+++|+-++ ..+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg---skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG---SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC---ceEEeeccCCceEEEEc
Confidence 4567899999999 556677999999999999986 455444333 4445555555443 67999999999999999
Q ss_pred CCCceEEEEcCcCCceeEEEEeCCCC--EEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC
Q 007768 417 NTKEITQEYDQHLGAVNTITFVDSNR--RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 417 ~t~~~~~~~~~h~~~V~~i~~~p~~~--~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg 494 (590)
.+++ +..+..|.++|.++.|.+... .|++||.|++|++||.+...++..+..+. .+.++.. -..+++++..+.
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv--~~pm~vVata~r 176 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADV--LYPMAVVATAER 176 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eeeehhc--cCceeEEEecCC
Confidence 9995 556678999999999998766 79999999999999999999988886543 3444333 356788999999
Q ss_pred eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC--eEEEEEecCCC---------c
Q 007768 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--KVFRTLKCHEG---------V 563 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~--~~~~~l~~h~~---------~ 563 (590)
.|.+|++++.... .+..... ..-.+.+|+..+|....+.|+-+|++.|..+..+ +.-.+|+.|.. .
T Consensus 177 ~i~vynL~n~~te--~k~~~Sp-Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 177 HIAVYNLENPPTE--FKRIESP-LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cEEEEEcCCCcch--hhhhcCc-ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 9999999765332 2222222 3455778999898888899999999999999876 55567777863 5
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 564 CIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 564 V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|.+++|+| -...|+|+|.||++.+||
T Consensus 254 VNsi~FhP-~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 254 VNSIAFHP-VHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ecceEeec-ccceEEEecCCceEEEec
Confidence 78899999 556899999999999998
No 118
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=8.9e-24 Score=200.78 Aligned_cols=289 Identities=16% Similarity=0.306 Sum_probs=230.6
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg 322 (590)
.+.-.+...+.+...|+.+++.|.-+..|......++.. +..+..-.|--|..+|.|+.|+.+ ..+|++|+.||
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD-----LkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDG 285 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD-----LKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDG 285 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhh-----hhhhhhcceeecccceEEEeeccc-HHHhhccCcCC
Confidence 333445566888999999999999888886654433211 111222344568899999999999 89999999999
Q ss_pred cEEEEecCCCCeeEEEec-cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc-eEEEEecCCCCCc
Q 007768 323 KVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQN 400 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~ 400 (590)
.|+||.+ .++.|++.|. .|+..|+|+.|+.|+..+++++.|.++++.-+.+|++++.|..+... .-..|..+ ++
T Consensus 286 kIKvWri-~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d---G~ 361 (508)
T KOG0275|consen 286 KIKVWRI-ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD---GH 361 (508)
T ss_pred cEEEEEE-ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC---CC
Confidence 9999999 7999999987 89999999999999999999999999999999999999999765432 23444443 47
Q ss_pred EEEEEECCCeEEEEeCCCCceEEEEcC--cCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEeecC--CCCce
Q 007768 401 ILLAGMSDKKIVQWDMNTKEITQEYDQ--HLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEP--HMHSM 475 (590)
Q Consensus 401 ~lvsg~~dg~I~iwD~~t~~~~~~~~~--h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~--~~~~i 475 (590)
.++++++||+|++|+..+.+++.+++. ...+|+++...|.+ ..|+++...++|+|.++. ++.++.+..+ ..+..
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 899999999999999999999998864 34578888888754 578899999999999985 4455555443 34457
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 476 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 476 ~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
.+++++|.|.++++.+.|+.++.|...++....... -| ...+..++-+|..++|++-+.||.+++|.
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~---Vh--EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP---VH--EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee---cc--cccccccccCcccchhhhhcccchhhhcC
Confidence 788899999999999999999999988775443222 23 34466789999999999999999999994
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=6.5e-21 Score=193.20 Aligned_cols=267 Identities=17% Similarity=0.205 Sum_probs=198.7
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEE-ecCCeE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNI 367 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L-~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I 367 (590)
+++.++.+|.. +.+++|+|+ +..+ ++++.++.|++||+ ..++.+..+..+.. +..++|+|+++.++++ +.++.|
T Consensus 22 ~~~~~~~~~~~-~~~l~~~~d-g~~l~~~~~~~~~v~~~d~-~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 22 EVTRTFPVGQR-PRGITLSKD-GKLLYVCASDSDTIQVIDL-ATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred ceEEEEECCCC-CCceEECCC-CCEEEEEECCCCeEEEEEC-CCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence 45667776654 678999999 6655 67788999999999 56677666655443 5788999999877654 568999
Q ss_pred EEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC-eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007768 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s 446 (590)
++||+.+++.+..+..+..+..+.+.+++ .+++++..++ .+.+||..+++....+.. ...+.++.|++++.+|++
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg---~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEPEGMAVSPDG---KIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWV 173 (300)
T ss_pred EEEECCCCeEEeEeeCCCCcceEEECCCC---CEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEE
Confidence 99999999888888766666777787755 4677776654 577889998877665432 335678999999998865
Q ss_pred E-eCCCcEEEEECCCCcEEEEeecC------CCCceeEEEEcCCCCEEEEE-EcCCeEEEEEcCCceeecccccccCccc
Q 007768 447 S-SDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 447 ~-s~Dg~I~iwdl~~~~~~~~~~~~------~~~~i~~i~~sp~g~~la~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
+ ..++.|++||+.+...+..+... .......++|+|++++++++ +.++.|.+||+.+........ .
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~---- 247 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--V---- 247 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--e----
Confidence 5 46899999999988776655321 11123468899999986554 456789999998755432211 1
Q ss_pred ccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcC
Q 007768 519 AGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
...+.+++|+|+|++|++++ .+|.|.+||+.+++++..++.. ...++++++|
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 23466899999999998874 6899999999999999999865 4458888875
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.9e-22 Score=190.30 Aligned_cols=236 Identities=19% Similarity=0.325 Sum_probs=194.8
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~ 421 (590)
....|.+|.|+|.+..|++++.||++++||+........+...++...++|... ..+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC----ceEEEeccCceEEEEEecCCcc
Confidence 357899999999999999999999999999999988888888888888888764 3599999999999999999865
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
.+ +..|..+|.||.+++....+++||.|++|++||.+.......+.. ...|.++.. .++.|++|+.+..|.+||+
T Consensus 88 ~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--~kkVy~~~v--~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 88 DQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--GKKVYCMDV--SGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred ee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--CceEEEEec--cCCEEEEeecCceEEEEEc
Confidence 43 457999999999999889999999999999999998665555533 336776665 5889999999999999999
Q ss_pred CCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eEEEEEecCCC---------cEEEEE
Q 007768 502 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEG---------VCIGCE 568 (590)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~----~~~~~l~~h~~---------~V~~v~ 568 (590)
++....... ......-.+.++++-|++.-.++++-||+|.+=.+... +.-..|++|.. +|.+++
T Consensus 163 Rn~~~~~q~---reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 163 RNLDEPFQR---RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred ccccchhhh---ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 986544321 12223456788999998888999999999988666554 44566777753 799999
Q ss_pred EcCCCCCEEEEEeCCCcEEEcC
Q 007768 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
||| -...|+|||.||.|.+||
T Consensus 240 Fhp-~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 240 FHP-IHGTFATGGSDGIVNIWD 260 (323)
T ss_pred ecc-ccceEEecCCCceEEEcc
Confidence 999 466899999999999998
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=206.67 Aligned_cols=285 Identities=18% Similarity=0.318 Sum_probs=231.7
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
+.|++|.--+..-+-++.|+..|.++||++ ..++.+.+++++...|+++.=+|-=..++.|..+|+|.++++..++.+.
T Consensus 160 ~~Ital~HP~TYLNKIvvGs~~G~lql~Nv-rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 160 DFITALLHPSTYLNKIVVGSSQGRLQLWNV-RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred CceeeEecchhheeeEEEeecCCcEEEEEe-ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 338888543344567899999999999999 7999999999999999999999977799999999999999999999999
Q ss_pred EecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc-CcCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007768 380 TFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 380 ~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
+|... ..+..+.|..++ ..++++|+..|.+.+||+...+++..+. .|.+.|+...|.+....+++++.|+++++|=
T Consensus 239 sFk~d~g~VtslSFrtDG--~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDG--NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEccccceeEEEeccCC--CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 99886 666667776654 4789999999999999999887776654 7889999999999988999999998888874
Q ss_pred CCCC-----------------cEEEEe-----------------------------------------------------
Q 007768 458 FGIP-----------------VVIKYI----------------------------------------------------- 467 (590)
Q Consensus 458 l~~~-----------------~~~~~~----------------------------------------------------- 467 (590)
.+++ .+++..
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 4310 000000
Q ss_pred ------------------------------------------ec-----CCCCceeEEEEcCCCCEEEEEEcCCeEEEEE
Q 007768 468 ------------------------------------------SE-----PHMHSMPSISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 468 ------------------------------------------~~-----~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd 500 (590)
.. .....+++++.++.|++.+.|+..|.|-+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 00 0114577899999999999999999999999
Q ss_pred cCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe----------------------------
Q 007768 501 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK---------------------------- 552 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~---------------------------- 552 (590)
+.++........-..| .+.|+.++...-++.+++++.+|.+.+||.+...
T Consensus 477 mQSGi~r~sf~~~~ah--~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAH--KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred cccCeeecccccCccc--cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC
Confidence 9987655443322344 6789999998888999999999999999976543
Q ss_pred -------------EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 553 -------------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 553 -------------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.++.|.+|.+.|++++||| ++++|++++.|++|++||
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWD 604 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEe
Confidence 2233567999999999999 889999999999999998
No 122
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=1e-22 Score=192.76 Aligned_cols=297 Identities=15% Similarity=0.270 Sum_probs=223.1
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCccccc----cC-CCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 007768 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKA----AN-DHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 319 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~----~~-~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs 319 (590)
+.-....+.....|.++++.|.++++.-.+.-..+. .. ...-..-.++++|-.|...|+++.|+|. ...|++|+
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~ILiS~s 191 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ETILISGS 191 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-hheEEecc
Confidence 334445677788888999999998876332111111 11 1111123579999999999999999999 89999999
Q ss_pred CCCcEEEEecCCCC--eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC--CCcceEEEEecC
Q 007768 320 MDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPD 395 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~--~~~~~~~~~~~~ 395 (590)
.|++|++||+.... +..+.+ ....+|++|.|+|.|.+|+.|.....+++||+++.++...-.. .+...+.++..+
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys 270 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS 270 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEec
Confidence 99999999994322 112222 3457899999999999999999999999999999998765543 222223333333
Q ss_pred CCCCcEEEEEECCCeEEEEeCCCCceEEEEc-CcCC-ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCC-
Q 007768 396 DDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLG-AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM- 472 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~-~h~~-~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~- 472 (590)
..+++.++|+.||.|++||--+++++.++. .|.+ .|.+..|..+++++++.+.|..+++|.+.++.++........
T Consensus 271 -~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t 349 (430)
T KOG0640|consen 271 -STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT 349 (430)
T ss_pred -CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc
Confidence 244799999999999999999999888874 4654 689999999999999999999999999999999888764311
Q ss_pred ---CceeEEEEcCCCCEEEEEEc-CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 473 ---HSMPSISLHPNTNWLAAQSL-DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 473 ---~~i~~i~~sp~g~~la~~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.--+...|+....|++.-.. .+.+.-||.++..+.... ..+| .+.+..+.-||.+.-+++|+.|-++++|--
T Consensus 350 grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~--slgH--n~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 350 GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL--SLGH--NGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc--ccCC--CCCceEEEeCCCCCceeeecccceeeeeee
Confidence 11234556667777766543 477999999987655332 3455 577888999999999999999999999964
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=4e-22 Score=206.52 Aligned_cols=293 Identities=22% Similarity=0.391 Sum_probs=223.7
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCC--CEEEEEeCCCcEEEEecCCCC--------------------eeE---------
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYG--HLILSAGMDTKVKIWDVVNSG--------------------KCM--------- 336 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g--~~L~sgs~Dg~I~iWd~~~~~--------------------~~~--------- 336 (590)
..+.+..+.||...|.+|+|...++ -+|+|+|.|..|+||.+...+ ...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3467789999999999999988744 478999999999999884222 111
Q ss_pred -EEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC--cEEEEecCCC----c--ceEEEEecCCCCCcEEEEEEC
Q 007768 337 -RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTGK----I--PYVVKLNPDDDKQNILLAGMS 407 (590)
Q Consensus 337 -~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--~~~~~~~~~~----~--~~~~~~~~~~~~~~~lvsg~~ 407 (590)
..+.||...|.++.|+|.+..|+++|.|.++.+|...+. --+.....+. . -+...|+++. +.+++-+.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~---~~ii~~g~ 336 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS---NVIIAHGR 336 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC---CEEEEecc
Confidence 123499999999999999999999999999999977654 3333333222 1 2345555544 68999999
Q ss_pred CCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC----------CC-------------
Q 007768 408 DKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG----------IP------------- 461 (590)
Q Consensus 408 dg~I~iwD~~t~---~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~----------~~------------- 461 (590)
.|..++|-.... .....+.+|...|..++|.|.|.+|++.|.|.+-|+|--- .+
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 999999984332 2334567899999999999999999999999888776421 00
Q ss_pred ------------cEEEEe--------------------------------------------------------------
Q 007768 462 ------------VVIKYI-------------------------------------------------------------- 467 (590)
Q Consensus 462 ------------~~~~~~-------------------------------------------------------------- 467 (590)
+.++.+
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 000000
Q ss_pred ------------------------ecCCCCceeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeecccccccCccc
Q 007768 468 ------------------------SEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 468 ------------------------~~~~~~~i~~i~~sp~g~~la~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
..+|...|.+++.+|+++++|+++.. ..|++|+..+-... ..+.+|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---~~L~~H-- 571 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---QELEGH-- 571 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---heeccc--
Confidence 02356678999999999999999865 45999998765433 456777
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe----EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~----~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.-.|+.++|||||+||++.+.|.++.+|...... ....++.|...|.++.|+| +..+++|+|.|.+|+||
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVW 645 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEE
Confidence 5669999999999999999999999999874422 2344789999999999999 67789999999999999
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.4e-23 Score=215.35 Aligned_cols=279 Identities=18% Similarity=0.372 Sum_probs=212.7
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC---eeEEEeccC---CCCeEEEEEcc-CCCEEEEEecCCeEEEEECC
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG---KCMRTYMGH---SKAVRDISFCN-DGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~---~~~~~~~~h---~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~ 373 (590)
...+|...++ -..|+.++. ..++|+.+.... ++...+... .-.+.+|.|+. +.++|++|+..|.|.+||+.
T Consensus 41 ~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 41 KANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccceEeecCC-cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 3455666677 555666554 467788774322 122222111 12456788886 67899999999999999998
Q ss_pred C---CcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CCEEEEEe
Q 007768 374 T---GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSS 448 (590)
Q Consensus 374 t---~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~-~~~l~s~s 448 (590)
. .+.+..|.. ......+.|++.. .++|++|+.||.|++||++..+-..++.+....|..+.|+|. +..|+++.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~te--p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTE--PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCC--ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 7 344444433 2344566666654 489999999999999999999989999888899999999984 67899999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007768 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
+.|.|.+||++.+.........|.++|.|+.|+|++.+||+|+.|+.|+||+..+.... ...+. ....++.++.|-
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-~~~tI---nTiapv~rVkWR 272 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-PKHTI---NTIAPVGRVKWR 272 (839)
T ss_pred CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-ceeEE---eecceeeeeeec
Confidence 99999999999887665555689999999999999999999999999999999764322 11111 123567889999
Q ss_pred CCCCE-EEEEc--CCCcEEEEeCCC-CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 529 PDGRF-VMSGD--GEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 529 pdg~~-l~sgs--~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
|..++ |++++ .|-.|+|||++. .-+..++..|...++.++|-..+...|.+|+.||+|.
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 98776 45544 477899999975 4568889999999999999876778999999999874
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.1e-22 Score=198.43 Aligned_cols=256 Identities=17% Similarity=0.263 Sum_probs=199.8
Q ss_pred CcEEEEecCCCCeeEEEeccCC-CCeEEEEEccCCCEEEEEecC-CeEEEEECCCCcEEE-EecCCCcceEEEEecCCCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYD-KNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s~D-g~I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~ 398 (590)
..+.+||+ .++....++++.. ..-.++..- .+.+++++... ..|.+|.+....... .+..+....++...+.+
T Consensus 18 ~~~~~~dl-~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G-- 93 (476)
T KOG0646|consen 18 INCIVWDL-RTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG-- 93 (476)
T ss_pred cceeEEec-CCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCc--
Confidence 45899999 6887777777652 211122111 33567766543 578999987654443 44455556666665544
Q ss_pred CcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC---------CCcEEEEeec
Q 007768 399 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG---------IPVVIKYISE 469 (590)
Q Consensus 399 ~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~---------~~~~~~~~~~ 469 (590)
.++++|+-.|.|++|.+.+|.++..+.+|-..|+|+.|+.++.+|++||.||.|.+|.+. +..++..+.
T Consensus 94 -~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~- 171 (476)
T KOG0646|consen 94 -YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS- 171 (476)
T ss_pred -eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-
Confidence 678888899999999999999999999999999999999999999999999999999873 234444443
Q ss_pred CCCCceeEEEEcCC--CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 470 PHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 470 ~~~~~i~~i~~sp~--g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
.|.-+|+.+.+.+. ..+|++++.|.++++||+..+..+.... ....+.+++++|-++.+++|+.+|.|.+.+
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 58889999988775 4689999999999999998876553322 245677899999999999999999999988
Q ss_pred CCCC----------------eEEEEEecCCC--cEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 548 WKSC----------------KVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 548 ~~t~----------------~~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+... ..+..+.+|.+ .|+|++.+- ++.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEe
Confidence 7432 34566788988 999999998 788999999999999998
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.5e-21 Score=180.82 Aligned_cols=254 Identities=19% Similarity=0.375 Sum_probs=193.2
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC---CeeEEEeccCCCCeEEEEEcc--CCCEEEEEecCCeEEEE
Q 007768 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYW 370 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~---~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vW 370 (590)
.+|..-|.|+.|.+. |+.+++|+.|++|+|||.... -.+....+.|.+.|..|.|.+ -|+.+++|++|+++.||
T Consensus 10 s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 489999999999999 999999999999999996322 256667889999999999977 68999999999999999
Q ss_pred ECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC--CCEEEEEe
Q 007768 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--NRRFVTSS 448 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~--~~~l~s~s 448 (590)
.-.. ..+..+. +-|- ....+....+.|+.|+|.|. |-.|++++
T Consensus 89 EE~~----~~~~~~~--------------------------~~Wv-----~~ttl~DsrssV~DV~FaP~hlGLklA~~~ 133 (361)
T KOG2445|consen 89 EEQE----KSEEAHG--------------------------RRWV-----RRTTLVDSRSSVTDVKFAPKHLGLKLAAAS 133 (361)
T ss_pred eecc----ccccccc--------------------------ceeE-----EEEEeecCCcceeEEEecchhcceEEEEec
Confidence 7431 1111000 0111 22334456678999999985 56889999
Q ss_pred CCCcEEEEECCCCcEEEEee------------cCCCCceeEEEEcCC---CCEEEEEEcC-----CeEEEEEcCCce-ee
Q 007768 449 DDKSLRVWEFGIPVVIKYIS------------EPHMHSMPSISLHPN---TNWLAAQSLD-----NQILIYSTRERF-QL 507 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~------------~~~~~~i~~i~~sp~---g~~la~~s~d-----g~I~iwd~~~~~-~~ 507 (590)
.||.||||+.-.+..+.... ..+..+..|+.|+|. ..+||+|+.+ +.+.||...... ..
T Consensus 134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw 213 (361)
T KOG2445|consen 134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW 213 (361)
T ss_pred cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee
Confidence 99999999976554333321 123456778899875 4678888766 578999865443 45
Q ss_pred cccccccCcccccceEEEEEcCC----CCEEEEEcCCCcEEEEeCCC--------------------CeEEEEEecCCCc
Q 007768 508 NKKKRFAGHIVAGYACQVNFSPD----GRFVMSGDGEGKCWFWDWKS--------------------CKVFRTLKCHEGV 563 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spd----g~~l~sgs~dg~I~iwd~~t--------------------~~~~~~l~~h~~~ 563 (590)
.....+.+| ..+|..++|.|+ -.+|++++.|| |+||.+.. -+.+..+..|.+.
T Consensus 214 ~kva~L~d~--~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 214 LKVAELPDH--TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred eeehhcCCC--CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 555666666 678999999995 35799999999 99999873 1245566789999
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 564 CIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 564 V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
|..+.|+- .+..|++.|.||+||+|
T Consensus 291 VWrv~wNm-tGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 291 VWRVRWNM-TGTILSSTGDDGCVRLW 315 (361)
T ss_pred eEEEEEee-eeeEEeecCCCceeeeh
Confidence 99999998 77899999999999999
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.1e-23 Score=214.04 Aligned_cols=245 Identities=16% Similarity=0.329 Sum_probs=198.9
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCC--CCeeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCcE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVN--SGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~--~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
.+..|+|..-..++||+++..|.|.+||+.. ..+.+..|..|...|+++.|++ ...+|++||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4667888877789999999999999999954 2466678899999999999999 667999999999999999998887
Q ss_pred EEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007768 378 IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 378 ~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..++.. ...+.-+.|+|.. ++.|+++...|.+++||+|.. ++...+..|.++|.|+.|+|++.+|++|+.|+.|+|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vki 246 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKI 246 (839)
T ss_pred cccccccchhhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEE
Confidence 777655 4556678888876 488999999999999999975 566778899999999999999999999999999999
Q ss_pred EECCCCcEEEEeecCCCCceeEEEEcCCCC-EEEEEE--cCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CC
Q 007768 456 WEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DG 531 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~~~~i~~i~~sp~g~-~la~~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg 531 (590)
||+..+............++.++.|-|... .|++++ .|-.|+|||++.... +...+..| ...++.++|.. |-
T Consensus 247 Wd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P~~t~~eH--~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 247 WDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--PYATFLEH--TDSVTGIAWDSGDR 322 (839)
T ss_pred EeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--cceeeecc--CccccceeccCCCc
Confidence 999866544333335677899999999765 466665 367899999986543 35566666 45577788855 55
Q ss_pred CEEEEEcCCCcEEEEeCCCC
Q 007768 532 RFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 532 ~~l~sgs~dg~I~iwd~~t~ 551 (590)
..|.+++.||.|..-.+++.
T Consensus 323 ~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeEeecCccHHHHhhhhcc
Confidence 67889999998876655543
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=194.72 Aligned_cols=287 Identities=14% Similarity=0.221 Sum_probs=230.5
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007768 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I 324 (590)
+++....++++.+++.+++.|...|.|....+. ...++.+.--..+|.+.+|.|++...+++++....+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-----------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-----------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCcc-----------ChhheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 456667899999999999999999998765542 235667767788999999999943499999999999
Q ss_pred EEEecCCCCee--EEEeccCC-CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcE
Q 007768 325 KIWDVVNSGKC--MRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 325 ~iWd~~~~~~~--~~~~~~h~-~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
+.||+ ...+. +....++. ..+.....++++++|+..+..|.|.|....+++.+..++.......++|..++ ..
T Consensus 283 ysyDl-e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds---k~ 358 (514)
T KOG2055|consen 283 YSYDL-ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS---KE 358 (514)
T ss_pred EEeec-cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC---cE
Confidence 99999 44433 23334443 46788899999999999999999999999999999999998888888888544 67
Q ss_pred EEEEECCCeEEEEeCCCCceEEEEcCcCC-ceeEEEEeCCCCEEEEEeCCCcEEEEECCC------CcEEEEeecCCCCc
Q 007768 402 LLAGMSDKKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMHS 474 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~------~~~~~~~~~~~~~~ 474 (590)
|++++.+|.|++||+++..++..+....+ .-++++.++++.+|++||..|.|.|||.++ ++++..+.. ....
T Consensus 359 l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-Ltt~ 437 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-LTTA 437 (514)
T ss_pred EEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh-hhee
Confidence 88888899999999999988888853322 236677789999999999999999999643 555655543 5668
Q ss_pred eeEEEEcCCCCEEEEEEc--CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 475 MPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 475 i~~i~~sp~g~~la~~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
|+++.|+|++.+||.+|. .+.+++-.+.+......+...... -+.++|++|||.|.+|+.|...|+|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~--vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK--VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc--ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999998875 477888887765544444433332 4679999999999999999999999999864
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.6e-20 Score=191.25 Aligned_cols=277 Identities=13% Similarity=0.223 Sum_probs=223.6
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccC-CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 376 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~ 376 (590)
-..+|.|++|+.+ .+.||.+-.+|.|.||++....-+...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.+++
T Consensus 24 ~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 4568999999999 7789999999999999997666666777766 4579999999 55678899999999999999999
Q ss_pred EEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE--EEcCcCCceeEEEEeCCCCEEEEEeCCCcE
Q 007768 377 VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQHLGAVNTITFVDSNRRFVTSSDDKSL 453 (590)
Q Consensus 377 ~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~--~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I 453 (590)
.+..+.. +..++.++.++.. ..+++|+.||.++.++...+.+.. .+....+.|.+++|+|++..+++|+.||.|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~---~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPEN---TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred eeEEecCCCcceeEEEeCCcc---ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence 9888765 6677889998876 579999999988888888876554 445667899999999999999999999999
Q ss_pred EEEECCCCcEEEEeec-------CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEE
Q 007768 454 RVWEFGIPVVIKYISE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~-------~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
++||...+..+..+.. ....-|.++.+- ....|++|...|.|.+||...+..+..... | ...|.+++
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~---h--~adVl~La 252 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSC---H--DADVLALA 252 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhh---h--hcceeEEE
Confidence 9999998877663221 122235666666 445799999999999999988766644433 3 45577899
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeE----EEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 527 FSPDGRFVMSGDGEGKCWFWDWKSCKV----FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~~----~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
..+++.++++++.|+.|..+...+.+. ......|...|.+++..+ ..|++||.|+.+.+
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAI 315 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEE
Confidence 999999999999999999998776543 233346888899999987 28999999998765
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=1.6e-20 Score=188.30 Aligned_cols=290 Identities=17% Similarity=0.263 Sum_probs=225.9
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC----------C----------------------------
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN----------S---------------------------- 332 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~----------~---------------------------- 332 (590)
..+....|.++|.+++...+ |. |+||+.|..|..||-.- .
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~-Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRD-GT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred EEeEeeecCCceEEEEEecC-cc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 34444499999999999988 65 55599999999998410 0
Q ss_pred -CeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeE
Q 007768 333 -GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 333 -~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 411 (590)
.....+..+|......++.+|+.+.|++|+.|+.+++|+ ..+++.+........+..|+|.+ .+++|...|..
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w 430 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG----VVAVGTATGRW 430 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc----eEEEeeccceE
Confidence 001112347888899999999999999999999999999 67788888788888899999865 59999999999
Q ss_pred EEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEE
Q 007768 412 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 412 ~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~ 490 (590)
.+.|.++..++..-.. ..+++++.|+|+|.+|+.|+.|+.|+||-+... .........+..+|+.+.|++++++|.+.
T Consensus 431 ~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 9999999777666555 889999999999999999999999999998653 34444444455899999999999999999
Q ss_pred EcCCeEEEEEcCCceeeccccccc-------------CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC---CeEE
Q 007768 491 SLDNQILIYSTRERFQLNKKKRFA-------------GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---CKVF 554 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~-------------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t---~~~~ 554 (590)
+.|-.|..|...........+... +......+..++-+.+.+++++|...|+|++|...- ..+.
T Consensus 510 S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~ 589 (626)
T KOG2106|consen 510 SGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS 589 (626)
T ss_pred cCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc
Confidence 999999999543222111111100 011122234455667788999999999999998753 3356
Q ss_pred EEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 555 RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 555 ~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+.+.+|.+.|.+++|.- +.+.|++.+.|.+|..|+
T Consensus 590 he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 590 HEYGGHSSHVTNVAFLC-KDSHLISTGKDTSIMQWR 624 (626)
T ss_pred eeeccccceeEEEEEee-CCceEEecCCCceEEEEE
Confidence 77889999999999998 666788888999999995
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=3.6e-21 Score=199.61 Aligned_cols=240 Identities=19% Similarity=0.313 Sum_probs=197.6
Q ss_pred CeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE--ecCCCcce-E-EEEecCCCCCcEEEEEECC
Q 007768 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--FSTGKIPY-V-VKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~--~~~~~~~~-~-~~~~~~~~~~~~lvsg~~d 408 (590)
-++.+.+.+|...|+.+++.+. ..++++|.||++++|+-...+.+.. +..+.... + +++.+ ...-.+++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEeeccc
Confidence 3566788999999999998754 4899999999999999876665542 33222222 2 34443 233469999999
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEE
Q 007768 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la 488 (590)
..|.+|.+.+..+...+.+|.+.|.|+....++. +++||.|.++++|-....... ..+|..+|.++..-|.+ .++
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~---l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS---LQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc---cCCcchheeeeeecCCC-cEE
Confidence 9999999999999999999999999999887776 999999999999986543322 45799999999999988 889
Q ss_pred EEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEE
Q 007768 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 489 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+|+.|..|++|.-.+ ..+++.+| ...|..+++-+++ .+++++.||.|++|++ +|.++..+.+|...|.++.
T Consensus 156 TgsaDKtIklWk~~~-----~l~tf~gH--tD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 156 TGSADKTIKLWKGGT-----LLKTFSGH--TDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred eccCcceeeeccCCc-----hhhhhccc--hhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 999999999997643 24678888 5778899998876 4668889999999998 8999999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEcC
Q 007768 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+ +...++|+|.|++++||+
T Consensus 227 ~~~-~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 227 MAL-SDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred ecC-CCCeEEEecCCceEEEee
Confidence 666 667999999999999995
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.8e-20 Score=200.11 Aligned_cols=244 Identities=17% Similarity=0.303 Sum_probs=200.7
Q ss_pred ccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC-cEEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC
Q 007768 340 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 417 (590)
Q Consensus 340 ~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~ 417 (590)
..|....+.|+|.|+|.+|++|+.||.|++|+.... ..-..+. .+..+.+++... +.|++|+.++.|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-----~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-----NHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-----cceEEeeccceEEEeeCC
Confidence 368888999999999999999999999999988665 2222332 333333333332 479999999999999999
Q ss_pred CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEE
Q 007768 418 TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 497 (590)
Q Consensus 418 t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~ 497 (590)
+++.-..+....-++++++|+.+|.+++.||+|-.|++-++........+. +|..+|.++.|+|++++||+.+.||.|+
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 887665666677899999999999999999999999999998777666664 6999999999999999999999999999
Q ss_pred EEEcCCceeeccccccc---CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec--CCCcEEEEEEcCC
Q 007768 498 IYSTRERFQLNKKKRFA---GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPL 572 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~ 572 (590)
||++.++.....+.... .......++.++|+|+|..++....|+.|.+|+..++.....+.. |...+..+.|+|
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP- 242 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP- 242 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-
Confidence 99998875544333221 222245677899999988888888999999999999999888864 445589999999
Q ss_pred CCCEEEEEeCCCcEEEcC
Q 007768 573 EQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 573 ~~~~l~s~g~Dg~I~iWD 590 (590)
.+.+||+++.||.|-|||
T Consensus 243 nG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWN 260 (933)
T ss_pred CCcEEeeeccCCcEEEEe
Confidence 688999999999999997
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.7e-21 Score=177.06 Aligned_cols=246 Identities=18% Similarity=0.285 Sum_probs=193.3
Q ss_pred eccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc---EEEEecCCCcc-eEEEEecCCCCCcEEEEEECCCeEEEE
Q 007768 339 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~---~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iw 414 (590)
-..|...|.++...--|.+|+||+.|++|+|+.++... .+..+..+..+ .-+.|. ++.-+.+|++++.||+|.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccccCcEeeEeecCceEEEE
Confidence 35688999998888889999999999999999998654 44555544433 334443 33456899999999999999
Q ss_pred eCCCCc--eEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCC--cEEEEeecCCCCceeEEEEcCC---C-
Q 007768 415 DMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPN---T- 484 (590)
Q Consensus 415 D~~t~~--~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~---g- 484 (590)
.-..++ ....+..|...|++|+|.|. |-.|++++.||.|.|.+++.. -....+...|.-.+++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 998884 34456789999999999986 558999999999999998765 3344555678889999999986 4
Q ss_pred ----------CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC----CEEEEEcCCCcEEEEeCCC
Q 007768 485 ----------NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG----RFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 485 ----------~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~dg~I~iwd~~t 550 (590)
+.|++|+.|+.|+||+..+. .......+.+| ...+..++|.|.- .+|++++.||+|.||-...
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H--~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGH--KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhc--chhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 56999999999999999875 33334457788 6889999999963 5799999999999997652
Q ss_pred C-e--EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 551 C-K--VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 551 ~-~--~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
. . ....+......+..+.|+. .+++|+.++.|+.|.+|
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLW 283 (299)
T ss_pred ccCcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEE
Confidence 1 1 1122333456899999999 78899999999999999
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=1.4e-19 Score=181.47 Aligned_cols=276 Identities=17% Similarity=0.308 Sum_probs=212.5
Q ss_pred EecCCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 007768 294 TWSGHT-KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 294 ~l~gH~-~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
.|.++. +-|.|++|.++ |. +++|.++|.|.||+. ...+..+....|.+.|.+++...+|. |++|+.|+.|..||
T Consensus 240 ~fek~ekk~Vl~v~F~en-gd-viTgDS~G~i~Iw~~-~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd- 314 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLEN-GD-VITGDSGGNILIWSK-GTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD- 314 (626)
T ss_pred ccccccceEEEEEEEcCC-CC-EEeecCCceEEEEeC-CCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-
Confidence 344433 56999999998 54 789999999999998 55566666669999999999999997 55599999999999
Q ss_pred CCCcEEEEecCCCcc-eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC
Q 007768 373 ETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK 451 (590)
Q Consensus 373 ~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg 451 (590)
..-+.++....+... .+-.+.+... . |++|...+.|..=.+..+-.+ ...+|......++.+|+...|++++.|+
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~--d-i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk 390 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKG--D-ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDK 390 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCC--c-EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcc
Confidence 444444444443322 2223333222 2 888888888887777766443 3347888999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007768 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
.+++|+ ..+.+-.. .-..+..|+.|+|.| .+++|+..|...+.|+.+...+.. |.....+..+.|+|+|
T Consensus 391 ~v~lW~--~~k~~wt~--~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~------~~d~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 391 HVRLWN--DHKLEWTK--IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI------HTDNEQLSVVRYSPDG 459 (626)
T ss_pred eEEEcc--CCceeEEE--EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE------EecCCceEEEEEcCCC
Confidence 999999 33333222 245678999999999 999999999999999988544322 2225678889999999
Q ss_pred CEEEEEcCCCcEEEEeCCC-CeEEEEEe-cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 532 RFVMSGDGEGKCWFWDWKS-CKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 532 ~~l~sgs~dg~I~iwd~~t-~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+||.|+.|+.|+||-+.. ++.+.... .|..+|+.+.|++ ++++|.+-+-|-.|-+|.
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEc
Confidence 9999999999999999864 45544443 4457999999999 788999999999999984
No 135
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=6e-21 Score=189.90 Aligned_cols=212 Identities=23% Similarity=0.410 Sum_probs=174.5
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe------eEEEeccCCCCeEEEEEcc-CCCEEEEEe
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK------CMRTYMGHSKAVRDISFCN-DGTKFLTAS 362 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~------~~~~~~~h~~~V~~l~fsp-dg~~l~s~s 362 (590)
++-.+|.||.+.=++|+|++...-.|++|+.|++|.+||+..... +...+.+|...|.+++|++ +..+|++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 344578899998899999998788999999999999999953332 4567889999999999999 667899999
Q ss_pred cCCeEEEEECCC--CcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEe
Q 007768 363 YDKNIKYWDTET--GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 363 ~Dg~I~vWd~~t--~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~ 438 (590)
.|+.+.|||+++ .++...... .....|+.|+|.+ ..+|++|+.|++|.+||+|+. +.+..+.+|...|.++.|+
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 999999999995 333333332 4556788888876 489999999999999999986 5788899999999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEECCCC-------------cEEEEeecCCCCceeEEEEcCCCCE-EEEEEcCCeEEEEEcCC
Q 007768 439 DSN-RRFVTSSDDKSLRVWEFGIP-------------VVIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTRE 503 (590)
Q Consensus 439 p~~-~~l~s~s~Dg~I~iwdl~~~-------------~~~~~~~~~~~~~i~~i~~sp~g~~-la~~s~dg~I~iwd~~~ 503 (590)
|.. ..|++++.|+.+.|||+..- ..+..+..+|...|..+.|+|+..+ |++.+.|+.+.||....
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 975 47889999999999998532 1233555689999999999999875 66678899999998863
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=2.2e-20 Score=193.66 Aligned_cols=284 Identities=19% Similarity=0.223 Sum_probs=219.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeE--EEeccCCCCeEEEEEccC-----------CCEEEEEecCCeEE
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM--RTYMGHSKAVRDISFCND-----------GTKFLTASYDKNIK 368 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~l~fspd-----------g~~l~s~s~Dg~I~ 368 (590)
..++.|.+. ...|.+.-.|..++|||+..-.+.- ..+.-|...|+++.--|- ...|++|+.|++|+
T Consensus 327 ~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCC-CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 446678888 7788888999999999995444332 334568888988876551 23699999999999
Q ss_pred EEECCCC---cEEEE-----------------------------------ecCCCcceEEEEecCCCCCcEEEEEECCCe
Q 007768 369 YWDTETG---QVIRT-----------------------------------FSTGKIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 369 vWd~~t~---~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
+||+..+ +..+. +.......+++++|++ ..|++|..-|.
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g---qhLAsGDr~Gn 482 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG---QHLASGDRGGN 482 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc---ceecccCccCc
Confidence 9999752 11111 0011223567777755 57999999999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCC--C
Q 007768 411 IVQWDMNTKEITQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT--N 485 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g--~ 485 (590)
|++|++...+....+..|...|.|+.|+. ..++|++++.|..|.|||+...-.+......|...|+++.|.-+| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 99999999999999999999999999984 256899999999999999987766655566799999999998877 6
Q ss_pred EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec---CCC
Q 007768 486 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEG 562 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~ 562 (590)
.+++++.|..|.+-..........+...........+..++..|..+++++++.|..|+|||+.+++..+.|++ |.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 78888999877654332111111112212222245677899999999999999999999999999999999985 667
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 563 VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
....+...| .+-+|+|...|.+|.++|
T Consensus 643 ~lIKv~lDP-SgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 643 DLIKVILDP-SGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred ceEEEEECC-CccEEEEeecCCceEEEE
Confidence 889999999 888999999999999987
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=3.7e-20 Score=192.06 Aligned_cols=293 Identities=18% Similarity=0.311 Sum_probs=216.5
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCC---EEEEEeCCCcEEEEecC-CCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGH---LILSAGMDTKVKIWDVV-NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~---~L~sgs~Dg~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
..+.++.||.+.|+|+.|-|. .. ++++|+.|+.|.+|.+. +.-.++.++.+|...+.|+ +.......+.+.|+
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADG 121 (764)
T ss_pred eeEEeccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCc
Confidence 457788999999999999998 55 79999999999999995 2235666777766555554 43322333337899
Q ss_pred eEEEEECCCCc--EEEEe--cCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEe
Q 007768 366 NIKYWDTETGQ--VIRTF--STG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 366 ~I~vWd~~t~~--~~~~~--~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~--~~~~~~~~h~~~V~~i~~~ 438 (590)
.+.+||.+..+ +...+ ..+ -.+.|+.+.+ ..+..++++|+.+..|.++.-.+. ..+..+.+|...|.+++|.
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 99999996555 22222 222 2344666666 345567778888888888876644 5677889999999999998
Q ss_pred CCCC---EEEEEeCCCcEEEEECCCCc------------------------EEE------EeecCCCCceeEEEEcCCCC
Q 007768 439 DSNR---RFVTSSDDKSLRVWEFGIPV------------------------VIK------YISEPHMHSMPSISLHPNTN 485 (590)
Q Consensus 439 p~~~---~l~s~s~Dg~I~iwdl~~~~------------------------~~~------~~~~~~~~~i~~i~~sp~g~ 485 (590)
..+. +|+++|.|..||||.+.... .+. .+..+|..-|.++.|+|.+.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 6554 78999999999999874322 011 11236888999999999999
Q ss_pred EEEEEEcCCeEEEEEcCCceee----cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC---CeEEEEEe
Q 007768 486 WLAAQSLDNQILIYSTRERFQL----NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---CKVFRTLK 558 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t---~~~~~~l~ 558 (590)
.|++++.|.++.+|......-+ .+.-...|. .+.....-|+|+++.+++-+..|..++|..+. ..+...+.
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~--a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS 358 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS--AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVIS 358 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccccc--ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccc
Confidence 9999999999999987654211 111222222 33456788999999999999999999998333 34556677
Q ss_pred cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 559 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 559 ~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+|...|.+++|+| .+.+|+|.|.|-+-||+
T Consensus 359 GH~~~V~dv~W~p-sGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 359 GHVDGVKDVDWDP-SGEFLLSVSLDQTTRLF 388 (764)
T ss_pred cccccceeeeecC-CCCEEEEeccccceeee
Confidence 9999999999999 78899999999998875
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5e-22 Score=206.65 Aligned_cols=237 Identities=20% Similarity=0.427 Sum_probs=205.5
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
.+..|...|.|+..-.. +..+++|+.|..+-||.+ .....+..|.+|..+|.+|.|++...+|++|+.+|+|++||++
T Consensus 23 ~~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAI-GKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhceeeeecc-ceeeccCCCceeeccccc-cCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 34579999999998444 899999999999999999 5566677799999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007768 374 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 374 t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
.++.++++.++. .+..+.|+|.. .+++.|+.|+.+.+||++...+...+.+|...|.++.|+|+|++++++++|.+
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~---~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYG---EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhhhhhhccccCcceeeeccce---EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 999998886654 34456677765 57789999999999999988899999999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
++|||+..++.+..+. .|...+.++.|||..-+++.|+.|++|++||+++...+...... ...|.+..|+|++.
T Consensus 178 vki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----TDGVRSLAFNPDGK 251 (825)
T ss_pred eeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----cCCceeeeecCCce
Confidence 9999999998887775 48889999999999999999999999999999876555433332 45577899999999
Q ss_pred EEEEEcCCC
Q 007768 533 FVMSGDGEG 541 (590)
Q Consensus 533 ~l~sgs~dg 541 (590)
.+++|....
T Consensus 252 ~~~~G~q~s 260 (825)
T KOG0267|consen 252 IVLSGEQIS 260 (825)
T ss_pred eeecCchhh
Confidence 999987654
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.1e-20 Score=177.61 Aligned_cols=291 Identities=18% Similarity=0.345 Sum_probs=214.8
Q ss_pred EecCCCCCeeEEEEcC----CCCCEEEEEeCCCcEEEEecCCCC--eeEEEec--cCCCCeEEEEEccC----CCEEEEE
Q 007768 294 TWSGHTKGVSAIRFFP----KYGHLILSAGMDTKVKIWDVVNSG--KCMRTYM--GHSKAVRDISFCND----GTKFLTA 361 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp----~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~--~h~~~V~~l~fspd----g~~l~s~ 361 (590)
...+|+.+|..++|.+ +....+++.+. ..+.||....++ ..+..+. .|......++|+-+ ..+++.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3458999999999985 22345666554 578999985555 4444443 36777888888763 3578899
Q ss_pred ecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE---cCcCCceeEEEE
Q 007768 362 SYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITF 437 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~---~~h~~~V~~i~~ 437 (590)
+.-|.|+|.|+.++++...+.. +..+.-+.+.|.. .+++++++.|..|++|++++..++..+ .+|.+.|.++.|
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~--~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR--PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCC--CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 9999999999999999887754 4556677787754 489999999999999999999988876 579999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEEe---------------------------ecCCCCceeEEEEcCCCCEEEEE
Q 007768 438 VDSNRRFVTSSDDKSLRVWEFGIPVVIKYI---------------------------SEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~---------------------------~~~~~~~i~~i~~sp~g~~la~~ 490 (590)
+.++.+|++++.|.+|++|++..+.....+ ...|...|.|+.|- |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 999999999999999999999743211111 11234444555553 6789999
Q ss_pred EcCCeEEEEEcC-Cceeeccc----------ccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEE--EEE
Q 007768 491 SLDNQILIYSTR-ERFQLNKK----------KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF--RTL 557 (590)
Q Consensus 491 s~dg~I~iwd~~-~~~~~~~~----------~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~--~~l 557 (590)
+-++.|..|... -...+... ..+.-.....+....+|.|-+++|+.|...|.|++||++...+. .++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 999999999862 11111111 11111222233445677888999999999999999999887652 222
Q ss_pred ec--CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 558 KC--HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 558 ~~--h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.. ....|...+|+. ++++|+...+|++|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWD 381 (385)
T ss_pred Eeccccceeeeeeecc-cCcEEEEEeCCCcEEEEE
Confidence 21 234789999999 788999999999999997
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.2e-22 Score=206.52 Aligned_cols=254 Identities=19% Similarity=0.388 Sum_probs=216.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVV 390 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~ 390 (590)
..++.....+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+..-..+..+..+ ..+.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 3455566666678888872 34468888888888778899999999999999999877777776554 455678
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~ 470 (590)
.|.+.. .+|++|+.+|.|++||+...+.++++.+|...+.++.|+|-+.++++|+.|+.+++||++...+...+..
T Consensus 77 ~f~~~E---~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s- 152 (825)
T KOG0267|consen 77 TFDTSE---RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS- 152 (825)
T ss_pred ecCcch---hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-
Confidence 887754 6899999999999999999999999999999999999999999999999999999999998888887765
Q ss_pred CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
|...+.++.|+|+|++++.++.|..++|||+..+..+ ..|.+| .+.+..+.|+|..-++++|+.|+.|+|||+++
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~---~ef~~~--e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS---KEFKSH--EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeecccccccc---cccccc--cccccccccCchhhhhccCCCCceeeeeccce
Confidence 8889999999999999999999999999999877655 455555 46677789999999999999999999999999
Q ss_pred CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 551 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 551 ~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
..++.........|.+..|+| ++..+++|..
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q 258 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNP-DGKIVLSGEQ 258 (825)
T ss_pred eEEeeccCCccCCceeeeecC-CceeeecCch
Confidence 999998888888999999999 5656666554
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.6e-19 Score=187.25 Aligned_cols=242 Identities=18% Similarity=0.276 Sum_probs=197.4
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE-ecC--CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~-~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t 418 (590)
-...|.+++|+.+.+.||.+-.+|.|-+|++..+=.... +.. ...+..++|+.. ..|++.+.+|.|.-||+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~----~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG----GRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC----CeEEeecCCceEEEEeccc
Confidence 457899999999999999999999999999988654433 333 334456777632 4588999999999999999
Q ss_pred CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCceeEEEEcCCCCEEEEEEcCCeEE
Q 007768 419 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQIL 497 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~la~~s~dg~I~ 497 (590)
++....+....++|.+|+.+|.+..++.|++||.++.++....+....... ...+.+.+++|+|++..|++|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 999999999999999999999999999999999888888877665544433 2447899999999999999999999999
Q ss_pred EEEcCCceeecccccccCcc---cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCC
Q 007768 498 IYSTRERFQLNKKKRFAGHI---VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
+||...+..+.....-.... ....|.++.|-.++ .|++|++.|.|.+||...+.++..+..|.+.|.+++..+ +.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~ 257 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NE 257 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CC
Confidence 99998876654211111110 13446667776554 789999999999999999999999999999999999998 67
Q ss_pred CEEEEEeCCCcEEEc
Q 007768 575 SKVATCGWDGLIKYW 589 (590)
Q Consensus 575 ~~l~s~g~Dg~I~iW 589 (590)
++|+++|.|+.|..+
T Consensus 258 d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQY 272 (691)
T ss_pred CeEEEccCCCceEEE
Confidence 899999999987643
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=180.11 Aligned_cols=249 Identities=18% Similarity=0.292 Sum_probs=186.5
Q ss_pred EecCCCCCeeEEEEcCCC-CCEEEEEeCCCcEEEEecCC---------------CCeeEEEeccCCCCeEEEEEcc-CCC
Q 007768 294 TWSGHTKGVSAIRFFPKY-GHLILSAGMDTKVKIWDVVN---------------SGKCMRTYMGHSKAVRDISFCN-DGT 356 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~-g~~L~sgs~Dg~I~iWd~~~---------------~~~~~~~~~~h~~~V~~l~fsp-dg~ 356 (590)
..-+|.+.|+.++-.+-+ ..++++-+..|.|+||++.. ..+++.++.+|...=+.|+||| ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 344788888888888762 45677778899999999832 2356677778888788888888 222
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEE
Q 007768 357 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT 436 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~ 436 (590)
.|++|..-+.|++|...+|.-. +. ...+.+|...|-.++
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~-------------------------------------vd----~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWK-------------------------------------VD----QRPFTGHTKSVEDLQ 264 (440)
T ss_pred ccccCccccceEeeeeccCcee-------------------------------------ec----Cccccccccchhhhc
Confidence 4666666667777765543211 00 112346999999999
Q ss_pred EeCCC-CEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007768 437 FVDSN-RRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 437 ~~p~~-~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
|+|.. ..|++||.||+|+|||++.+ +....+...|...|..|.|+....+||+|+.||+++|||++.-+.-.....|+
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk 344 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK 344 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE
Confidence 99964 58999999999999999987 22222335788899999999988899999999999999999866556666777
Q ss_pred CcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCCCe----------------EEEEEecCC--CcEEEEEEcCCCCC
Q 007768 515 GHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCK----------------VFRTLKCHE--GVCIGCEWHPLEQS 575 (590)
Q Consensus 515 ~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~t~~----------------~~~~l~~h~--~~V~~v~~sp~~~~ 575 (590)
-| ..+|++|.|+|. ...|++++.|..|.|||+..-. +-+.+-.|. ..|..+.||++-..
T Consensus 345 ~H--k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 345 YH--KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred ec--cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 77 678999999994 5678888899999999985311 111222353 36889999999999
Q ss_pred EEEEEeCCCc
Q 007768 576 KVATCGWDGL 585 (590)
Q Consensus 576 ~l~s~g~Dg~ 585 (590)
+|++.+.||.
T Consensus 423 ~lvsTa~dGf 432 (440)
T KOG0302|consen 423 LLVSTAIDGF 432 (440)
T ss_pred eEEEecccce
Confidence 9999999984
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.6e-20 Score=185.19 Aligned_cols=259 Identities=17% Similarity=0.268 Sum_probs=197.7
Q ss_pred CeeEEEEcCCCCCEEEEE--eCCCcEEEEecCCCCe---eEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 007768 301 GVSAIRFFPKYGHLILSA--GMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sg--s~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
+|.+++|... ++|+++ +.|..|++|.- .++ ..+.-......-.|++......++++|+..++|+|||++..
T Consensus 36 g~~s~~w~~~--n~lvvas~~gdk~~~~~~K--~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 36 GDFSFNWQRR--NFLVVASMAGDKVMRIKEK--DGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred cceeeecccc--ceEEEeecCCceeEEEecc--cCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence 4999999877 335444 55778999975 332 11111112224455555556689999999999999999955
Q ss_pred cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC-ceeEEEEeCCCCE-EEEEeCCCcE
Q 007768 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRR-FVTSSDDKSL 453 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~-~V~~i~~~p~~~~-l~s~s~Dg~I 453 (590)
.+.+.+. ++...+..+..+. ...+|++++..|.|.+..+.++.....|....+ .|.-+.|++..+. |.+++++|.|
T Consensus 112 l~hr~lk-dh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 112 LIHRFLK-DHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred HHhhhcc-CCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 5555444 4444444444333 236899999999999999999987777765534 5668999998775 5678999999
Q ss_pred EEEECCCCcEEEEeecCCCCceeEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 454 RVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
.+||+....++..+...|..+...|+|+|.. .+|++.+.|..|.+||++.......+. ...+...++|+++|.
T Consensus 190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------YSHPLSTVAFSECGT 263 (673)
T ss_pred EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee------ecCCcceeeecCCce
Confidence 9999999999888888999999999999964 678889999999999998654332221 234566899999999
Q ss_pred EEEEEcCCCcEEEEeCCC-CeEEEEEecCCCcEEEEEEcC
Q 007768 533 FVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp 571 (590)
+|++|+..|.|..||++. ..++..+.+|...|++++|-|
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 999999999999999986 457899999999999999988
No 144
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=1.5e-20 Score=174.75 Aligned_cols=298 Identities=13% Similarity=0.211 Sum_probs=205.9
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec-cCCCCeEEEEEccCCCEEEEEecCC
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
+|+.++..+++|.+.|+|+.|-.+ .+|++|..-|.|++|++ .+...+..+. .|...|+.+.--|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~l-qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVL-QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccc--hhhhcccccceEEEEEe-ecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 466778899999999999999876 46999999999999999 5666666676 57788999998887 5688899999
Q ss_pred eEEEEECCCCcEEEEec--CCCcceE-EEEecCCCCC-cEEEEEECC-CeEEEEeCCCCceEEEE----cCcCCceeEEE
Q 007768 366 NIKYWDTETGQVIRTFS--TGKIPYV-VKLNPDDDKQ-NILLAGMSD-KKIVQWDMNTKEITQEY----DQHLGAVNTIT 436 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~--~~~~~~~-~~~~~~~~~~-~~lvsg~~d-g~I~iwD~~t~~~~~~~----~~h~~~V~~i~ 436 (590)
.+.+|++.-+..+..-. ..+-..| ..+.+.+... .+++.-+.. ..+.+-|......++.. ....+.++|..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 99999998765543322 1111111 1111111111 111111110 01222232222222222 13456677776
Q ss_pred EeC-CCC--EEEEEeCCCcEEEEECCCCcEEEEee---------cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007768 437 FVD-SNR--RFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 437 ~~p-~~~--~l~s~s~Dg~I~iwdl~~~~~~~~~~---------~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~ 504 (590)
+.- .+. .+++|-.+|.+.+||+..+..+..+. ..|..++.++.+.+.-..=++++.+..+..|++...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 532 233 46788899999999998864333221 247778999999887666678888888999988643
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
...........- ....+..+.+-||++.+++++.||+|+||++++..++..++.|.+.|.+++|+| +..+++++|.|+
T Consensus 238 ~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 238 TGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDA 315 (323)
T ss_pred cCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCc
Confidence 111111111100 123355688999999999999999999999999999999999999999999999 677999999999
Q ss_pred cEEEcC
Q 007768 585 LIKYWD 590 (590)
Q Consensus 585 ~I~iWD 590 (590)
+|.+|+
T Consensus 316 rISLWk 321 (323)
T KOG0322|consen 316 RISLWK 321 (323)
T ss_pred eEEeee
Confidence 999996
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=3.6e-19 Score=169.95 Aligned_cols=272 Identities=18% Similarity=0.273 Sum_probs=206.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-----------eeEEEec-cCCCCeEEEEEc-------cCCCEEEEEe
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-----------KCMRTYM-GHSKAVRDISFC-------NDGTKFLTAS 362 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-----------~~~~~~~-~h~~~V~~l~fs-------pdg~~l~s~s 362 (590)
...+.|+|+ |..|++-+.|..+.+|++..+. +...++. .....|.+.+|- |+..++++.+
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 345789999 9999999999999999983211 0111111 234568888886 5778999999
Q ss_pred cCCeEEEEECCCCcEEEEecCC------CcceEEEEecCCCCCcEEEEEECCCeEEEEeC-CCCceEEE--E-----cCc
Q 007768 363 YDKNIKYWDTETGQVIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM-NTKEITQE--Y-----DQH 428 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~-~t~~~~~~--~-----~~h 428 (590)
.+.-|++||.-+|+....+..- ....+++|++++. .|++| ....|++||+ |.|.-... . .+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEeec-ccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999999988777542 2345788888764 45554 5789999999 66642221 1 234
Q ss_pred CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc-CCeEEEEEcCCcee
Q 007768 429 LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRERFQ 506 (590)
Q Consensus 429 ~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~-dg~I~iwd~~~~~~ 506 (590)
.+-|.|++|+|-.. .+++++....+-||.-....++..+. .|.+.|+.++|+++|+.|++|.. +..|.+||++....
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 67789999999665 88999999999888887777776665 69999999999999999999875 67899999986432
Q ss_pred ecccccccCccc-ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 507 LNKKKRFAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 507 ~~~~~~~~~~~~-~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
+ +..+..|.. ...-.-....|+|++|++|+.+|.|++||++. +..+..+..|...|+.++++| --.+++|++.
T Consensus 286 p--v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP-~mpilatssG 360 (406)
T KOG2919|consen 286 P--VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP-IMPILATSSG 360 (406)
T ss_pred h--hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc-ccceeeeccC
Confidence 2 233334432 22223467789999999999999999999998 787888889999999999999 4667777764
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=179.02 Aligned_cols=240 Identities=15% Similarity=0.227 Sum_probs=179.4
Q ss_pred eEEEEEcc-------CCCEEEEEecCCeEEEEECCCCcEEE---Ee-----------------cCCCcceEEEEecCCCC
Q 007768 346 VRDISFCN-------DGTKFLTASYDKNIKYWDTETGQVIR---TF-----------------STGKIPYVVKLNPDDDK 398 (590)
Q Consensus 346 V~~l~fsp-------dg~~l~s~s~Dg~I~vWd~~t~~~~~---~~-----------------~~~~~~~~~~~~~~~~~ 398 (590)
-.|+.|.. -|+++|.|+.|..|.|||+.-...+. .+ ..+|...++.+.++...
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35667654 36899999999999999986322110 00 01233334455555556
Q ss_pred CcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeE
Q 007768 399 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 399 ~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
.++|++|+.|.+|.+||+.++++...+..|.+.|.++.|+|. ...|++||.|++|.+.|.+.+....... ...+.|-.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEE
Confidence 689999999999999999999999999999999999999986 4588999999999999998643222111 25678999
Q ss_pred EEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCCCeE--
Q 007768 478 ISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCKV-- 553 (590)
Q Consensus 478 i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~t~~~-- 553 (590)
++|+|.. ..+++++.||+|+-+|+|... ........| ...|.++++++. -.+|++++.++.|++|++.....
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AH--d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAH--DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEec--cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 9999865 567788899999999999764 223444455 678888999885 44688999999999999864333
Q ss_pred EEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 554 FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 554 ~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+..-...-+...|.++.|+....|+.||..+.++|||
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccccccceeecccCCCcceEEEecCccceEEEee
Confidence 2221112234677888887788999999999999997
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.3e-19 Score=185.04 Aligned_cols=246 Identities=20% Similarity=0.304 Sum_probs=195.5
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEE
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 413 (590)
.+-..+.+|.+.|++|+..|.|.+|++|+.||+|+||.+.+|.|++++.....+.+++|+|.+.. .+|+++.. ..+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~-~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL-CVLAVAVG-ECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc-eeEEEEec-CceEE
Confidence 34556889999999999999999999999999999999999999999999999999999998764 33333333 33444
Q ss_pred EeCCCCc-------------------------------------eEEEEcCcCCceeEEEEeCCCCEEEEEeCC---CcE
Q 007768 414 WDMNTKE-------------------------------------ITQEYDQHLGAVNTITFVDSNRRFVTSSDD---KSL 453 (590)
Q Consensus 414 wD~~t~~-------------------------------------~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D---g~I 453 (590)
.+..-|. -+...-.|...|+.+.|+..|.+|++..-+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 4332110 012223477889999999999999987654 578
Q ss_pred EEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007768 454 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
.|+++........+. ...+.+.++.|||...+|++++ ...|+|||+.....+..+. .+ ...+..++++|.|.-
T Consensus 549 liHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~--tg---~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLL--TG---SKWISSMSIHPNGDN 621 (733)
T ss_pred EEEecccccccCchh-hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHh--cC---CeeeeeeeecCCCCe
Confidence 899987665544443 2566799999999999998877 4679999997754443332 22 356778999999999
Q ss_pred EEEEcCCCcEEEEeCCC-CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 534 VMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 534 l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
|+.|+.|+.++.+|+.- .+++++++.|...+++|+||+ .-.++++|+.||++.|+
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVF 677 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEE
Confidence 99999999999999974 578899999999999999999 77899999999999886
No 148
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.3e-19 Score=169.05 Aligned_cols=245 Identities=18% Similarity=0.313 Sum_probs=178.2
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc-----EEEEecCCCcceEEEEecCCCCCcEEEEEECCCeE
Q 007768 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 411 (590)
..+++|.+.|++++|+.||++|++++.|+.|+||+++... +++.--.-..+..+.|.|+-. .++++.-...+|
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~--s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK--SVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc--eEEEEEccCCEE
Confidence 4678999999999999999999999999999999997642 233222233667788888654 677777788899
Q ss_pred EEEeCCCC---ceEE---------EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEE
Q 007768 412 VQWDMNTK---EITQ---------EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 412 ~iwD~~t~---~~~~---------~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~ 479 (590)
++|-+... .... .-..|.-.|..+-....+.+|++++.|..|.+|+++ ++.+..+.. ....-+..+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-cccccccee
Confidence 99977432 1111 112356667777788888999999999999999998 777766643 445567789
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcC---Cc--eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----
Q 007768 480 LHPNTNWLAAQSLDNQILIYSTR---ER--FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---- 550 (590)
Q Consensus 480 ~sp~g~~la~~s~dg~I~iwd~~---~~--~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t---- 550 (590)
++|+|+++++++.--.|++|.+- .+ +...+...+.|| ...|..++||++...+++.+.||+++|||+.-
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH--~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH--QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc--hhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 99999999999999999999862 22 233444567788 56788999999999999999999999999742
Q ss_pred ---CeEEEEEe----cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 551 ---CKVFRTLK----CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 551 ---~~~~~~l~----~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.+.+.... +-.+.-..+..+| ++..|+.+. ...|+++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVF 357 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEE
Confidence 22333321 1223334789999 555444332 3345544
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=4.8e-20 Score=184.48 Aligned_cols=236 Identities=17% Similarity=0.295 Sum_probs=194.3
Q ss_pred cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC---cEEEEe---cCCCcceEEEEecCCCCCcEEEEEECCCeEEEE
Q 007768 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTF---STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~---~~~~~~---~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 414 (590)
.|..-|.++.++...++++||+. |.|+|||+... ..+..+ .....+..+.+.+++ +.|++|+.-.++.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg---rtLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG---RTLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC---ceEEeccccceeeee
Confidence 58888999999999999999986 89999999643 223333 234455667777765 579999999999999
Q ss_pred eCCCCce--EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc
Q 007768 415 DMNTKEI--TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 415 D~~t~~~--~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~ 492 (590)
|+..... ..++....-....++.+||.+..++++.||.|.|||+.+...++.+. +|...+.||.++++|..|.+|+.
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCceeecCCC
Confidence 9986543 33343334567788999999999999999999999999999888885 69999999999999999999999
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCC
Q 007768 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 572 (590)
|++|+.||++.+..+ ..|.....|.++.++|.+.+|++|-.++.+.|..... .....+..|...|.++.|.+
T Consensus 572 DntvRcWDlregrql------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~- 643 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQL------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAY- 643 (705)
T ss_pred ccceeehhhhhhhhh------hhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecc-
Confidence 999999999987544 3344467788899999999999999999999988544 44455667999999999999
Q ss_pred CCCEEEEEeCCCcEEEc
Q 007768 573 EQSKVATCGWDGLIKYW 589 (590)
Q Consensus 573 ~~~~l~s~g~Dg~I~iW 589 (590)
.+.++++.|.|..+..|
T Consensus 644 cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAW 660 (705)
T ss_pred cCceeeecCchhhhhhc
Confidence 78899999999998888
No 150
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5e-19 Score=172.37 Aligned_cols=291 Identities=15% Similarity=0.165 Sum_probs=216.3
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC-----CCeeEEEec-cCCCCeEEEEEccCCCEEEEEecCCe
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-----SGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-----~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
+-+.+|.+.|++|.|+.+ +++|++|+.|..++||++.. ..+++.... .|...|.|++|....++|++|+.+++
T Consensus 50 KD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 446699999999999999 99999999999999999832 224444433 35689999999999999999999999
Q ss_pred EEEEECCCCcEEEEecCCC---cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc-eE--EEEcCcCCceeEEEEeCC
Q 007768 367 IKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-IT--QEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~-~~--~~~~~h~~~V~~i~~~p~ 440 (590)
|.+.|+++.+.+..+.... .++.+..+|. .++|++.+.++.|.+||.+... .. ..+........++.|+|.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~---DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPT---DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCC---CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 9999999999998886654 5666777775 3789999999999999998754 21 122233456778899987
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEEEeec-----CC-CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc-cc-
Q 007768 441 NR-RFVTSSDDKSLRVWEFGIPVVIKYISE-----PH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KK- 511 (590)
Q Consensus 441 ~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~-----~~-~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~-~~- 511 (590)
.. +|++.+..+-+-+||++.+........ +. .....++.|+|+|+.|++.-....-.+||+.+..+... ..
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 55 567778888899999987643221110 11 12235678999999998877777777888866332211 11
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----------C-------------eEEEEEecCCCcEEEEE
Q 007768 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------C-------------KVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t----------~-------------~~~~~l~~h~~~V~~v~ 568 (590)
...|......+.+++|.-|- -+++|+.+-.|++|.+.. | +.+..+++|...+..+.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 11122233345567776554 489999999999998742 1 23567889999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEc
Q 007768 569 WHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 569 ~sp~~~~~l~s~g~Dg~I~iW 589 (590)
|+| ...+|++.|....|+||
T Consensus 365 F~~-H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 365 FSQ-HNNLLVSSGVENSFKLW 384 (609)
T ss_pred ecC-CcceEeccchhhheecc
Confidence 999 67799999999999999
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=4.2e-19 Score=182.84 Aligned_cols=272 Identities=16% Similarity=0.291 Sum_probs=209.9
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
.|..++|-|++..+++.+ +..+.|||. +++..+.++++|...|.|++|+.||.+|++|+.|..|.+|.-. -+-+..
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~-ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDT-SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeC-CCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee
Confidence 799999999944444444 357999999 7999999999999999999999999999999999999999854 334455
Q ss_pred ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 007768 381 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~ 460 (590)
++++..+.|+.|+|.. +.+++++ =...-+|......... . .....|.+++|..+|.+|+.|-.+|+|.|-+-..
T Consensus 90 YSH~D~IQCMsFNP~~---h~LasCs-LsdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT---HQLASCS-LSDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred eccCCeeeEeecCchH---HHhhhcc-hhhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 6677788888888865 3455544 3446678766543221 1 2345789999999999999999999999986533
Q ss_pred CcEEE-EeecCCCCceeEEEEcCCC-----CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007768 461 PVVIK-YISEPHMHSMPSISLHPNT-----NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 461 ~~~~~-~~~~~~~~~i~~i~~sp~g-----~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
...+. .-..+...+|.+++|+|+. ..+++.....++.+|.+.... +.+.+.+ .-..+++.+.++|.|+
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk~r~L-----~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGKDRAL-----NFDPCCISYFTNGEYI 237 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-ecccccC-----CCCchhheeccCCcEE
Confidence 32222 2223467789999999963 578888999999999886533 3222221 2224468999999999
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 535 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+.|+.|+.+.+|- +.|-.+.++-..+.-|+.++.+| ++..++.|+.||+|-.|+
T Consensus 238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhh
Confidence 9999999999996 67777888877778999999999 778999999999997764
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.8e-19 Score=178.67 Aligned_cols=245 Identities=20% Similarity=0.307 Sum_probs=183.6
Q ss_pred eEEEEcCC------CCCEEEEEeCCCcEEEEecCCCC--eeEEE------------------eccCCCCeEEEEEccC-C
Q 007768 303 SAIRFFPK------YGHLILSAGMDTKVKIWDVVNSG--KCMRT------------------YMGHSKAVRDISFCND-G 355 (590)
Q Consensus 303 ~~l~~sp~------~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~------------------~~~h~~~V~~l~fspd-g 355 (590)
.|+.|... -|+++|.|++|..|.|||+.-.. .+..+ -.+|+..|.+|+|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56666432 26899999999999999983111 11111 2369999999999884 4
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeE
Q 007768 356 TKFLTASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 434 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~ 434 (590)
+.|+|||.|.+|++||+.++++..++. .+..+.++.|++... .+|++|+.|++|.+.|+|........-...+.|-.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 688999999999999999999999997 466677888887654 79999999999999999954332222234678999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 435 ITFVDSN-RRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 435 i~~~p~~-~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
++|.|.. ..|+++..||+|+-+|+|.. +++..+ ..|..+|.++++++. ..++++++.|+.|++|++.......
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~--- 410 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS--- 410 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc---
Confidence 9999865 46888889999999999988 445444 469999999999886 4678999999999999986533211
Q ss_pred cccCcc-cccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCCeEE
Q 007768 512 RFAGHI-VAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 512 ~~~~~~-~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
...|. .-+..+|.++.|+-. +++.|+..+.++|||+.+...+
T Consensus 411 -v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 411 -VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred -cccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 11111 123355677777654 4677888888999999876654
No 153
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-18 Score=189.97 Aligned_cols=304 Identities=17% Similarity=0.258 Sum_probs=223.4
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC------CeeEEEeccCCCCeEEEEEccCCCEEEE
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~------~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
....++..+..|+..|..++.++..+.+++|||.||+|++|++.+- .+...++......+.++.+.+.++.||+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3456888999999999999999987799999999999999998421 1344455556788999999999999999
Q ss_pred EecCCeEEEEECCCC-------cEEEEecCCCcceEEEEec-C-CCCCcEEEEEECCCeEEEEeCCCCceEEEEc--CcC
Q 007768 361 ASYDKNIKYWDTETG-------QVIRTFSTGKIPYVVKLNP-D-DDKQNILLAGMSDKKIVQWDMNTKEITQEYD--QHL 429 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~-------~~~~~~~~~~~~~~~~~~~-~-~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~--~h~ 429 (590)
++.||.|++.+++-. .+.+.........++.+.. . ......++.+...+.|..||++.....+.++ ...
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 999999999998752 1222222233333333322 1 1222588899999999999999876655543 345
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCC---CEEEEEE--cCCeEEEEEcCCc
Q 007768 430 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT---NWLAAQS--LDNQILIYSTRER 504 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g---~~la~~s--~dg~I~iwd~~~~ 504 (590)
|.|++++.+|.+.++++|...|.+.+||++-..++..+..++..+|..+..+|-. ...++++ ..+.|.+|++.++
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 7899999999999999999999999999999999999988888999999988743 3444444 5688999999887
Q ss_pred eeecccccccCc--------------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEE----------------
Q 007768 505 FQLNKKKRFAGH--------------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF---------------- 554 (590)
Q Consensus 505 ~~~~~~~~~~~~--------------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~---------------- 554 (590)
.+...+..-.+. .........++...+.++++|++|+.|+.||.......
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~ 1355 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSE 1355 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccch
Confidence 544322221000 00111222344445678999999999999996431100
Q ss_pred --------------------------------EEE--------ecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 555 --------------------------------RTL--------KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 555 --------------------------------~~l--------~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+ ..|..+|+++++...+..+|++++.||.|+||-
T Consensus 1356 s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1356 SYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 001 136678999998887778999999999999993
No 154
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.3e-20 Score=183.57 Aligned_cols=296 Identities=22% Similarity=0.310 Sum_probs=230.7
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc--CCCEEEEEecCCeE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNI 367 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I 367 (590)
.+...|.+|.+.|..|.|+.. |..|++|+.|..|.+||.......+.-..+|...|....|-| +.+.|++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 456778899999999999998 999999999999999999655566666778999999988988 55789999999999
Q ss_pred EEEECC-CCcEEEE---ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE---cCcCC---ceeEEEE
Q 007768 368 KYWDTE-TGQVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLG---AVNTITF 437 (590)
Q Consensus 368 ~vWd~~-t~~~~~~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~---~~h~~---~V~~i~~ 437 (590)
++=.+. ++.+..+ ......+..+++.|... ..|.+++.|+.+.-+|++++.....+ ..+.. ...+|+.
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 998764 3433322 22334455566666544 67999999999999999987543322 23333 5678888
Q ss_pred eCCCC-EEEEEeCCCcEEEEECCCCcE------EEEee-----cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007768 438 VDSNR-RFVTSSDDKSLRVWEFGIPVV------IKYIS-----EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 438 ~p~~~-~l~s~s~Dg~I~iwdl~~~~~------~~~~~-----~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~ 505 (590)
.|.+. .|++++.|..+++||.+.-.. +..+. ......|++++++.++.-|++...|-.|++|.-.-+.
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 88766 799999999999999864221 12222 1234569999999888888888889999999543221
Q ss_pred e----------ecccccccCcccccceEEEEE-cCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCC
Q 007768 506 Q----------LNKKKRFAGHIVAGYACQVNF-SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 506 ~----------~~~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
- ......++||.+...|..+.| -|...|+++|+.-|.|.||+-++++++..+.+....|.|+.=||. -
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~-~ 448 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH-L 448 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC-C
Confidence 1 122334889988888887776 688899999999999999999999999999987779999999994 5
Q ss_pred CEEEEEeCCCcEEEc
Q 007768 575 SKVATCGWDGLIKYW 589 (590)
Q Consensus 575 ~~l~s~g~Dg~I~iW 589 (590)
.+|||+|.|..|+||
T Consensus 449 PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIW 463 (559)
T ss_pred chhhccCCccceeee
Confidence 599999999999999
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.5e-16 Score=166.31 Aligned_cols=289 Identities=28% Similarity=0.557 Sum_probs=226.4
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCC-EEEEEecCCe
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKN 366 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~ 366 (590)
...+..+.+|...|.+++|+|+ +..+++++. |+.+++|++ .....+..+.+|...|.+++|+|++. .+++++.|+.
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDL-RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEc-CCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 4677888999999999999999 778888885 999999999 45788888999999999999999998 5556699999
Q ss_pred EEEEECCCCcEEE-EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCCCCEE
Q 007768 367 IKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
|++||...+..+. .+..+.......+.+.+ .++++++.++.+++|+++.... +..+..|...|.++.|.|++..+
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 9999999888877 45444433322565554 5788999999999999997654 44446788999999999988888
Q ss_pred EEEeCCCcEEEEECCCCcEEEEee-cCCCCceeEEEEcCCCCEEEEE-EcCCeEEEEEcCCceeecccccccCcccccce
Q 007768 445 VTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~-~~~~~~i~~i~~sp~g~~la~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
++++.|+.+.+|++.......... ..+...+..+.+.+++..++.+ ..|+.+.+|++..... ....... ..+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~---~~~ 373 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP---LKTLEGH---SNV 373 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce---eEEecCC---ceE
Confidence 889999999999998877666654 3455578888884332455555 6788999999877541 1111111 116
Q ss_pred EEEEEcCCCCEEEE-EcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 523 CQVNFSPDGRFVMS-GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 523 ~~v~~spdg~~l~s-gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+.+++ ...++. +..++.+.+|+.........+..+...+..+.+.+ ++..+++++.++.+++|+
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWD 440 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEe
Confidence 6788888 544444 68899999999999988887776546788899998 777888899999999995
No 156
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.3e-19 Score=171.61 Aligned_cols=272 Identities=17% Similarity=0.242 Sum_probs=193.7
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc--CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc--e
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--Y 388 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~--~ 388 (590)
..+|++...|.|+|||. .+++.+..+++|...++.+.|.. ....+.+|+.||+|++||+++......+.....+ .
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 67888999999999999 57899999999999999999987 5678999999999999999988766655443322 2
Q ss_pred EEEEecCCCCCcEEEEEE----CCCeEEEEeCCCCce-EEE-EcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCC
Q 007768 389 VVKLNPDDDKQNILLAGM----SDKKIVQWDMNTKEI-TQE-YDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~----~dg~I~iwD~~t~~~-~~~-~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~ 461 (590)
.+++... -+.+++++|. .+-.|.+||+|..+. +.. ...|..-|++++|+|.. +.|++||.||.|.|||+...
T Consensus 120 f~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLN-CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeecc-CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 2333322 2346777775 467899999998765 444 46799999999999964 68999999999999999765
Q ss_pred cE----EEEeecCCCCceeEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccc-------cCcccccceEEEEEcC
Q 007768 462 VV----IKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRF-------AGHIVAGYACQVNFSP 529 (590)
Q Consensus 462 ~~----~~~~~~~~~~~i~~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~v~~sp 529 (590)
.. ...+ .+..+|.++.|+.++ +.|.+-+......+|++..+......... .......++...-...
T Consensus 199 ~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 199 NEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred cchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 32 1222 366779999999876 45777888999999999876533221111 0011122333222223
Q ss_pred CCCEEEEEcC-CCcEEEEeCC---C---CeEEEEEec-CCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 530 DGRFVMSGDG-EGKCWFWDWK---S---CKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 530 dg~~l~sgs~-dg~I~iwd~~---t---~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
++..++.++. -|...++-+. + .+.+..+.+ |...|+++.|.. ...++.|||.||.+.+|
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAW 343 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEE
Confidence 4445544443 5555555432 2 344566666 666788888886 67799999999999999
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=3.3e-19 Score=173.37 Aligned_cols=221 Identities=20% Similarity=0.310 Sum_probs=167.8
Q ss_pred eccCCCCeEEEEEccCC--CEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeC
Q 007768 339 YMGHSKAVRDISFCNDG--TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg--~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 416 (590)
...|.+.|+.+.-++-+ .+.++-+..|.|.||++... ++.+.. .+...- +
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~------------------------~~~~~~-~- 198 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSE------------------------PGLEVK-D- 198 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcC------------------------cccccc-c-
Confidence 34677778877777754 45555667899999998532 111111 000000 0
Q ss_pred CCCceEEEEcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEE--EeecCCCCceeEEEEcCCC-CEEEEEEc
Q 007768 417 NTKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIK--YISEPHMHSMPSISLHPNT-NWLAAQSL 492 (590)
Q Consensus 417 ~t~~~~~~~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~--~~~~~~~~~i~~i~~sp~g-~~la~~s~ 492 (590)
...+++.++.+|.+.-..|+|+|-. ..|++|..-+.|++|...++.-.. .-...|..+|-.++|+|.. ..|++|+.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 3346778888999999999999932 358888888999999987653221 1112488899999999974 68999999
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC---CeEEEEEecCCCcEEEEEE
Q 007768 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---CKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t---~~~~~~l~~h~~~V~~v~~ 569 (590)
||.|+|||++.+....... .+.| .+-|..|.|+.+-.+|++|+.||.+.|||+++ ++++..|+.|..+|+++.|
T Consensus 279 DgsIrIWDiRs~~~~~~~~-~kAh--~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVS-TKAH--NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred CceEEEEEecCCCccceeE-eecc--CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence 9999999999873322222 2444 45788899999988999999999999999865 6789999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEcC
Q 007768 570 HPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 570 sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+|.+.+.|+++|.|..|.|||
T Consensus 356 ~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 356 HPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred ccccCceEEeccCCCcEEEEE
Confidence 999999999999999999998
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=7.5e-20 Score=199.96 Aligned_cols=280 Identities=19% Similarity=0.313 Sum_probs=206.7
Q ss_pred EEEEcCCCCCEEEEE----------eCCCcEEEEecCCCC-----eeEEEeccCCCCeEEEEEccCCCE----EEEEecC
Q 007768 304 AIRFFPKYGHLILSA----------GMDTKVKIWDVVNSG-----KCMRTYMGHSKAVRDISFCNDGTK----FLTASYD 364 (590)
Q Consensus 304 ~l~~sp~~g~~L~sg----------s~Dg~I~iWd~~~~~-----~~~~~~~~h~~~V~~l~fspdg~~----l~s~s~D 364 (590)
.++|+|.+..+|++| +.+.++-||.+.... +.+..+ .-...-+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 467888854466655 335566777652111 122222 23456789999997765 8889999
Q ss_pred CeEEEEECCCC---cE---EEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE--cCcCCceeEEE
Q 007768 365 KNIKYWDTETG---QV---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTIT 436 (590)
Q Consensus 365 g~I~vWd~~t~---~~---~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~--~~h~~~V~~i~ 436 (590)
|.|.+||...- .. +.++. .|...+..+.++...++++++|+.+|.|.|||+...+.-..+ ......|.+++
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999998652 21 22222 233333334444455589999999999999999876544443 22456799999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCC-CceeEEEEcCCC-CEEEEEEcC---CeEEEEEcCCceeeccc
Q 007768 437 FVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNT-NWLAAQSLD---NQILIYSTRERFQLNKK 510 (590)
Q Consensus 437 ~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~-~~i~~i~~sp~g-~~la~~s~d---g~I~iwd~~~~~~~~~~ 510 (590)
|+.. ...|++++.+|.+.|||++..+.+..+..... ..+..+.|||+. ..|++++.| -.|.+||++... ...
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~ 246 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPL 246 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cch
Confidence 9865 34688999999999999999988777765333 347789999986 456666655 359999998643 335
Q ss_pred ccccCcccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 511 KRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+.+.+| ...|.++.|++.+ ++|++++.|++|.+|+..+++.+..+.....-+..+.|+|.+..+++.++.||.|.|+
T Consensus 247 k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 247 KILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 666777 4568889999966 8999999999999999999999999998888999999999888899999999999886
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.3e-16 Score=166.83 Aligned_cols=287 Identities=29% Similarity=0.550 Sum_probs=222.7
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC-CeEEEEE-ccCCC-EEEEEec-CCeEEE
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK-AVRDISF-CNDGT-KFLTASY-DKNIKY 369 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~-~V~~l~f-spdg~-~l~s~s~-Dg~I~v 369 (590)
.+.+|...|.++.|.+. +..++.++.|+.+.+|+.......+..+.++.. .+..+.+ ++++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 56689999999999999 889999999999999999433326777776443 7777777 78777 5555455 999999
Q ss_pred EECCC-CcEEEEecCC-CcceEEEEecCCCCCcEEEEEEC-CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-EEE
Q 007768 370 WDTET-GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFV 445 (590)
Q Consensus 370 Wd~~t-~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~-dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~-~l~ 445 (590)
|+... ......+..+ .....+.+.+... .+++++. ++.+++|++..+..+..+..|...|.++.|+|++. .++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99998 5555555443 4445677777653 6777775 99999999999888999999999999999999998 555
Q ss_pred EEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007768 446 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
+++.|+.|++||......+......|.... ...|+|++.++++++.++.+++|++...... ...+.+| ...+.++
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~--~~~v~~~ 290 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL--LRTLSGH--SSSVLSV 290 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE--EEEEecC--CccEEEE
Confidence 559999999999886666663333455544 3389999999999999999999999865541 1112344 5678889
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe--cCCCcEEEEEEcCCCCCEEEEE-eCCCcEEEcC
Q 007768 526 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 590 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~--~h~~~V~~v~~sp~~~~~l~s~-g~Dg~I~iWD 590 (590)
.|+|++..+++++.|+.+.+|+..+........ .|...+..+.| +.+...++.+ ..|+.+.+|+
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeee
Confidence 999999999889889999999999888777776 88888999999 5232455555 6888998885
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=6.3e-19 Score=176.43 Aligned_cols=220 Identities=18% Similarity=0.281 Sum_probs=181.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEe
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~ 381 (590)
-.|++.... ..++++|+..+.|+|||+ ....+.+.+.+|...|+++.++....+|++++..|.|.|..+.++.....|
T Consensus 82 ~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl-~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 82 AFCVACASQ-SLYEISGGQSGCVKIWDL-RAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred HHHHhhhhc-ceeeeccCcCceeeehhh-HHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence 344444444 578999999999999999 577788899999999999999999999999999999999999999888888
Q ss_pred cCCCcc--eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-cCcCCceeEEEEeCCCC-EEEEEeCCCcEEEEE
Q 007768 382 STGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWE 457 (590)
Q Consensus 382 ~~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-~~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwd 457 (590)
..+... ..+.+++. +..+|.+++.+|.|.+||+........+ ..|..+...|+|+|.+. +|++.+.|+.|.+||
T Consensus 160 ~~~sgqsvRll~ys~s--kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPS--KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ecCCCCeEEEeecccc--cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 765433 34555554 4588999999999999999987766554 67999999999999765 678899999999999
Q ss_pred CCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007768 458 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
++.......+. ..++...++|.++|.+|++|+..|.|..||++..... ......| ...|++++|-|..
T Consensus 238 ~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P--v~v~sah--~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 238 IRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP--VAVRSAH--DASVTRVAFQPSP 305 (673)
T ss_pred cccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCCCC--ceEeeec--ccceeEEEeeecc
Confidence 99888777774 5678999999999999999999999999999875432 3445555 4458889997754
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.8e-19 Score=172.36 Aligned_cols=245 Identities=19% Similarity=0.393 Sum_probs=181.1
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEe---ccCCCCeEEEEEccCCCEEEEE
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY---MGHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~---~~h~~~V~~l~fspdg~~l~s~ 361 (590)
++...++...+.||...|+.|+|+|...++|++||.|..|++|++ .+..|+..+ .+|...|.++.|+.+|.+|++|
T Consensus 121 d~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI-~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 121 DVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI-QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred ecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec-cCCeEEEEecccccccCcEEEEEEcCCCCeeecc
Confidence 556677888899999999999999998899999999999999999 688888876 4699999999999999999999
Q ss_pred ecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 362 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
+.|.+|++|++...+....+... ..+.+...... |- .-.+.+.+.. +-.-|...|-|+.|. |
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s-----~~~~~~~t~~p-fp----t~~~~fp~fs------t~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELS-----ITYSPNKTTRP-FP----TPKTHFPDFS------TTDIHRNYVDCVRWF--G 261 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhh-----cccCCCCccCc-CC----cccccccccc------ccccccchHHHHHHH--h
Confidence 99999999999865443333221 22232221100 00 0112222221 224588999999996 6
Q ss_pred CEEEEEeCCCcEEEEECC-CCcEEEEee------------cCCCCceeE--EEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007768 442 RRFVTSSDDKSLRVWEFG-IPVVIKYIS------------EPHMHSMPS--ISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~-~~~~~~~~~------------~~~~~~i~~--i~~sp~g~~la~~s~dg~I~iwd~~~~~~ 506 (590)
.++++=|.++.|..|... -...+..+. .-.+..|.- .+|.|-+++||.|...|.|.+||++....
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 799999999999999872 111111110 112233443 45567789999999999999999987655
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
. ...++..+.....|...+||.||.+|+..+.|+.|+-||..
T Consensus 342 ~-~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 342 P-KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred c-cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 4 33445555556788999999999999999999999999964
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=179.44 Aligned_cols=253 Identities=19% Similarity=0.295 Sum_probs=178.1
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEE--eccCCCCeEEEEEcc-CCCEEEEEecCCeEE
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT--YMGHSKAVRDISFCN-DGTKFLTASYDKNIK 368 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~--~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~ 368 (590)
+..+..|...|..+.|.|. ..+|++++.|.++++||+ ....++.. +.||...|.+++|.+ +...|++|+.||.|.
T Consensus 93 lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdv-k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDV-KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred hcccccccceeEeeccCCC-ceeEEEccCCceeeeeee-ccceeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 5667799999999999995 889999999999999999 67777666 899999999999999 567899999999999
Q ss_pred EEECCCCcE--------------------EE----Eec----CCCcceE-EEEecCCCCCcEEEEEEC-CCeEEEEeCCC
Q 007768 369 YWDTETGQV--------------------IR----TFS----TGKIPYV-VKLNPDDDKQNILLAGMS-DKKIVQWDMNT 418 (590)
Q Consensus 369 vWd~~t~~~--------------------~~----~~~----~~~~~~~-~~~~~~~~~~~~lvsg~~-dg~I~iwD~~t 418 (590)
|||++-... .. .+. ....+.. +......+. +.|++++. |+.|++||++.
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecc
Confidence 999863220 00 000 0011111 112222222 45666555 99999999997
Q ss_pred CceEEE--------EcCc---CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEeecC-CCCceeEEEEcCCC
Q 007768 419 KEITQE--------YDQH---LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYISEP-HMHSMPSISLHPNT 484 (590)
Q Consensus 419 ~~~~~~--------~~~h---~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~--~~~~~~~-~~~~i~~i~~sp~g 484 (590)
...... +..| .-.+.++.....|.+|++.+.|++|++|++..... +..+... .......-..+|++
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC
Confidence 543222 2223 33577888888889999888899999999975322 1111110 11112233568999
Q ss_pred CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCC
Q 007768 485 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 485 ~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~ 551 (590)
.+|++|+.|...++|.+.+... ....+.|| ...|++++|.|.. .-+++++.|..++||++..+
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEA--PPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceEeccCCCcceeeeeecCccC--ChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999999999999976543 34556777 4557788887732 23566699999999998653
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=5.5e-18 Score=166.50 Aligned_cols=282 Identities=20% Similarity=0.324 Sum_probs=201.5
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC---C-----eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---G-----KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~---~-----~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
..+|..+.|.+++.+.|+||+.|..|+||-+... + +.+..+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4579999999996679999999999999987321 1 3455678899999999999999999999999999999
Q ss_pred ECC--------C--------CcEEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCcee
Q 007768 371 DTE--------T--------GQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 433 (590)
Q Consensus 371 d~~--------t--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~ 433 (590)
-.. + ....+.+. ....++-++|.+++ +++++|+.|..+++||+..|.....+..|..-|.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~---~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS---NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC---ceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 765 2 11111221 23456667777755 6899999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee---------------------c-CCCCceeEEEEcCCCCEEEEEE
Q 007768 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS---------------------E-PHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~---------------------~-~~~~~i~~i~~sp~g~~la~~s 491 (590)
.++|.|-++++++-+.|...+.+.+.....+.... . ....-...++|+|+|.+|++..
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99999999999999999988888776544333322 0 0111245678999999988764
Q ss_pred c----CC-----eEEEEEcCCceeecccccccCcccccceEEEEEcC-----------------CCCEEEEEcCCCcEEE
Q 007768 492 L----DN-----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-----------------DGRFVMSGDGEGKCWF 545 (590)
Q Consensus 492 ~----dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-----------------dg~~l~sgs~dg~I~i 545 (590)
. .+ ..++|+-....+ +...+.+. ...+..+.|+| -.++++.-.....|+|
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~r--P~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKR--PAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred ceeeeCCceeeceeEeeccccccC--ceeecCCC--CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 2 22 234444322111 11111111 12222333333 1223333444568999
Q ss_pred EeCCCCeEEEEEe-cCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 546 WDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 546 wd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
||.++..++.... .|-..|+.++|++ ++..|+..+.||...+
T Consensus 326 ydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 326 YDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSL 368 (434)
T ss_pred eccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEE
Confidence 9999988877664 5888999999999 7888999999997543
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=6.2e-19 Score=179.65 Aligned_cols=263 Identities=19% Similarity=0.303 Sum_probs=192.3
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC-------CCeeEEEeccCCCCeEEEEEccCCCEEEEEec
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~ 363 (590)
+-.++..|...|+.+.|+|. ...|++|+.||+|++|++.. .-+++.+|.+|.++|.|+++.+++..+++|+.
T Consensus 286 ik~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeeeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 33488899999999999998 78999999999999999921 22678899999999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007768 364 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
||+|+.|++-... .++.. +|.. .+...+.+|.+.|..+.+++...+
T Consensus 365 Dg~I~~w~~p~n~----------------dp~ds----------------~dp~--vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQ----------------DPDDS----------------YDPS--VLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred CceeeeeccCCCC----------------Ccccc----------------cCcc--hhccceeccccceeeeeecccccc
Confidence 9999999874211 01100 1111 123456789999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCCC-ceeEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeec--ccccccCcccc
Q 007768 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLN--KKKRFAGHIVA 519 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-~i~~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~~--~~~~~~~~~~~ 519 (590)
|++++.||++++|+...... ..+..+..+ ...++.+-... .+.++...-+.-.++++.....+. ......+....
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 99999999999999876555 223222222 22344443222 122222222222233332222111 11122222223
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+..+.++|.+.+.+++..|+.|+++|..++++++...+|...++++++.| ++-+|++++.||.|++|.
T Consensus 490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhh
Confidence 4466789999999999999999999999999999999999999999999999 788999999999999994
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=4.7e-18 Score=166.24 Aligned_cols=208 Identities=22% Similarity=0.334 Sum_probs=167.3
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC------eeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCe
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 366 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~ 366 (590)
.+.||+++|..++|+|.+.+.|||||.|.+|.||.+...+ +++..+.+|...|--++|+| -.+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4569999999999999989999999999999999995433 46778899999999999999 4578999999999
Q ss_pred EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEE
Q 007768 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFV 445 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~ 445 (590)
|.+|++.+|+.+.++.+...++.+.|+.++ .+|++.+.|.+|+|||.++++++.+-.+|.+. -..+.|..++..+.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCC---ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999999888877777777887765 68999999999999999999999998888763 45566777887444
Q ss_pred EE---eCCCcEEEEECCCCcE-EEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCc
Q 007768 446 TS---SDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRER 504 (590)
Q Consensus 446 s~---s~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~ 504 (590)
+| ..+..+-+||...... +..........|.---|.++.++++.++ .|+.|+.|.+...
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 44 2467899998654322 2222223455677777888888776655 6899999998654
No 166
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=1.2e-17 Score=157.78 Aligned_cols=209 Identities=17% Similarity=0.276 Sum_probs=160.9
Q ss_pred ccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCc----------EEEEec----CCC--cceEEEEecCCCCCcEE
Q 007768 340 MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQ----------VIRTFS----TGK--IPYVVKLNPDDDKQNIL 402 (590)
Q Consensus 340 ~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~----------~~~~~~----~~~--~~~~~~~~~~~~~~~~l 402 (590)
..|.+.|+++...+ .|+++++|+.||.|.|||++... .+..+. .++ .+..+.|.|.+. .+|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt--GmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT--GMF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC--cee
Confidence 35889999999988 79999999999999999997543 111111 112 233555666544 689
Q ss_pred EEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEE
Q 007768 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 403 vsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~---~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~ 479 (590)
.+++-|.++++||..+.+....|. ..+.|.+-+++|- .-++++|..+-.|++.|+..+.....+. +|...|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEE
Confidence 999999999999999998877775 4566777777763 3467888889999999999998887775 6999999999
Q ss_pred EcCCCCE-EEEEEcCCeEEEEEcCCc-eeeccc--------cccc-CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 480 LHPNTNW-LAAQSLDNQILIYSTRER-FQLNKK--------KRFA-GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 480 ~sp~g~~-la~~s~dg~I~iwd~~~~-~~~~~~--------~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
|+|...+ |++|+.||.|++||++.. .++..+ .... .....+.+..++|+.+|.++++++.|.++++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9998775 788999999999999753 111111 1111 1223577889999999999999999999999998
Q ss_pred CCCe
Q 007768 549 KSCK 552 (590)
Q Consensus 549 ~t~~ 552 (590)
.+|+
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 8765
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.2e-19 Score=194.19 Aligned_cols=248 Identities=17% Similarity=0.288 Sum_probs=194.2
Q ss_pred CCeeEEEEcCCCCC---EEEEEeCCCcEEEEecCC-----CCeeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEE
Q 007768 300 KGVSAIRFFPKYGH---LILSAGMDTKVKIWDVVN-----SGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYW 370 (590)
Q Consensus 300 ~~V~~l~~sp~~g~---~L~sgs~Dg~I~iWd~~~-----~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vW 370 (590)
..-+.|+|.+.+.+ +|+.|..||.|.+||... ....+.++..|.+.|+.+.|++ .+++|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45788999987444 599999999999999843 1245677889999999999999 45599999999999999
Q ss_pred ECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC--ceeEEEEeCCCC-EEEE
Q 007768 371 DTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG--AVNTITFVDSNR-RFVT 446 (590)
Q Consensus 371 d~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~--~V~~i~~~p~~~-~l~s 446 (590)
|+..-+.-..+.. .....+.++.++...+++|++++.+|.+.|||++..+.+..+..+.+ .+..+.|+|++. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 9987544433321 12223445555556678999999999999999999988877766654 478899999864 5666
Q ss_pred EeCCC---cEEEEECCCCcEEEEeecCCCCceeEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007768 447 SSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 447 ~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
++.|. .|.+||+|.......+...|...|.++.|++.+ .+|++++.|++|.+|+..++..+..+.. ...++
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-----~~nW~ 299 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-----QGNWC 299 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-----CCcce
Confidence 65543 699999987655555556799999999999976 8999999999999999999877654443 24678
Q ss_pred EEEEEcCCCC-EEEEEcCCCcEEEEeCCCCe
Q 007768 523 CQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 523 ~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~ 552 (590)
..+.|+|... .+++++-||.|-|+.+..+.
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8899999765 77888899999999987654
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=2e-17 Score=155.86 Aligned_cols=259 Identities=20% Similarity=0.343 Sum_probs=193.2
Q ss_pred CCcEEEEecCCCCe--eEEEeccCCCCeEEEEEcc-CCCEEEEEecC-------CeEEEEECCCC---------cEEEEe
Q 007768 321 DTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCN-DGTKFLTASYD-------KNIKYWDTETG---------QVIRTF 381 (590)
Q Consensus 321 Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~D-------g~I~vWd~~t~---------~~~~~~ 381 (590)
|+.|.+-.+...+. .-..|..|.+.|..|+-+| +.+.|+++..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 56777777643332 2345677889999999999 55566665442 25789987532 233333
Q ss_pred cC--CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce-EEEEc-----CcCCceeEEEEeC--CCCEEEEEeCCC
Q 007768 382 ST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYD-----QHLGAVNTITFVD--SNRRFVTSSDDK 451 (590)
Q Consensus 382 ~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-~~~~~-----~h~~~V~~i~~~p--~~~~l~s~s~Dg 451 (590)
.. .....|+.|.|+.+ -+++..|..|.+|++..+.. +..+. .+....++-+|+| +++.+++.+ |+
T Consensus 119 dteavg~i~cvew~Pns~----klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~ 193 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSD----KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DS 193 (370)
T ss_pred CHHHhCceeeEEEcCCCC----eeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CC
Confidence 32 22457888888654 33444599999999987654 44432 2455678889998 566666665 79
Q ss_pred cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007768 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~-~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
++..||+++......+...|...+..+.|+|+.. +|++|+.||.|+|||++... .....+.+| ..++.++.|+|.
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~H--sHWvW~VRfn~~ 269 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGH--SHWVWAVRFNPE 269 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCC--ceEEEEEEecCc
Confidence 9999999999999899889999999999999865 68889999999999998643 334566677 678999999994
Q ss_pred -CCEEEEEcCCCcEEEEeCCCC-----------------------------eEEEEEecCCCcEEEEEEcCCCCCEEEEE
Q 007768 531 -GRFVMSGDGEGKCWFWDWKSC-----------------------------KVFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 531 -g~~l~sgs~dg~I~iwd~~t~-----------------------------~~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
.++|++|++|..|.+|...+- ..+.++..|...|.+++|+..++-++++-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 678899999999999965321 13446777999999999999899999999
Q ss_pred eCCCcEEE
Q 007768 581 GWDGLIKY 588 (590)
Q Consensus 581 g~Dg~I~i 588 (590)
+.||.+.|
T Consensus 350 SYDGRviI 357 (370)
T KOG1007|consen 350 SYDGRVII 357 (370)
T ss_pred ccCceEEe
Confidence 99999876
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1e-16 Score=147.77 Aligned_cols=272 Identities=15% Similarity=0.250 Sum_probs=188.2
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCC---------CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
.|.+-+|+|. +++|+.|..+|.|.+..+.. ....+...++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3666688999 99999999999999998831 224556678999999999998 44677776 59999998
Q ss_pred CCCCcE------EEEecC------CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC
Q 007768 372 TETGQV------IRTFST------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 372 ~~t~~~------~~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p 439 (590)
...... +..... ...+.+-++..++....+|.+ +.|+.++.||+++|+..+++++|...|.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A-gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA-GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe-cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 754322 111111 112223333333333344444 4899999999999999999999999999999877
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecC--------CCC-ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEP--------HMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~--------~~~-~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~ 510 (590)
....+++|+.||++|+||.++.+.+..+... +.+ .| .++.-+..+|++|+ ...+.+|.++.......+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecC-CCceeEEeccCCCceEEE
Confidence 7779999999999999999999988877531 111 13 34444677888765 567999999886554332
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 511 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.+.+ .+..+.|- ...+++++....|.-|.+ +|.+-..+...+..+++..|+-.--.+|-.+|....+.|+
T Consensus 244 -pipa-----~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 -PIPA-----RVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred -eccc-----ceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 2333 34456674 447788887778888875 4555555555555677777765323345556666666553
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.9e-17 Score=175.65 Aligned_cols=261 Identities=18% Similarity=0.330 Sum_probs=195.0
Q ss_pred CcceEEEecCC---CCCeeEEEEcCC-CCCEEEEEeCCCcEEEEecCCCC----eeEEEecc---C----CCCeEEEEEc
Q 007768 288 PKRLVHTWSGH---TKGVSAIRFFPK-YGHLILSAGMDTKVKIWDVVNSG----KCMRTYMG---H----SKAVRDISFC 352 (590)
Q Consensus 288 p~~~i~~l~gH---~~~V~~l~~sp~-~g~~L~sgs~Dg~I~iWd~~~~~----~~~~~~~~---h----~~~V~~l~fs 352 (590)
-.+++..|..+ ...|+.+.+-.. +..+|++|+.||.|+||+-+... +++..+.+ + .+.=.-+.|.
T Consensus 1095 ~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq 1174 (1387)
T KOG1517|consen 1095 KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ 1174 (1387)
T ss_pred cCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehh
Confidence 33444444433 356888887653 35789999999999999875543 33333322 1 1112446787
Q ss_pred cCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC---ceEEEEcCcC
Q 007768 353 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHL 429 (590)
Q Consensus 353 pdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~---~~~~~~~~h~ 429 (590)
....+|+++|.-+.|+|||.....++..+..+....+..++.+...++++++|..||.|++||.|.. ..+..++.|.
T Consensus 1175 Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1175 QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN 1254 (1387)
T ss_pred hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccC
Confidence 7666777777679999999999999999888877777888888777899999999999999999865 3677888898
Q ss_pred Cc--eeEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEEEEeec--CC--CCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 430 GA--VNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISE--PH--MHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 430 ~~--V~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~~--~~--~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
.. |..+.+.+.|-. |++|+.+|.|++||++.......+.. .. .+.++++.+|+....+|+|+. +.|.||++.
T Consensus 1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 87 999999987755 99999999999999998532222211 11 235999999999999999998 999999986
Q ss_pred Cceeeccccc---ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 503 ERFQLNKKKR---FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 503 ~~~~~~~~~~---~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
.. .+..++. |.+.. .+.+.+++|+|.--+|++|+.|..|.||.....
T Consensus 1334 G~-~l~~~k~n~~F~~q~-~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1334 GE-QLNIIKYNPGFMGQR-IGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hh-hhcccccCcccccCc-CCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 53 3333332 22222 345678999999999999999999999986554
No 171
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=167.73 Aligned_cols=209 Identities=20% Similarity=0.346 Sum_probs=150.5
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE-EeccCCCCeEEEEEcc--CCCEEEEEecCCeEE
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCN--DGTKFLTASYDKNIK 368 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~ 368 (590)
...|.||++.|+||.|+.+ |.+|++|+.|-.+.|||.. ..+++. .-.+|...|.++.|-| +.+.+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~-~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPF-EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCC-CCEEeecCCcceEEeecch-hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3567899999999999999 9999999999999999995 444444 4568999999999999 567899999999999
Q ss_pred EEECCCCcE----------EEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce----------EEEEcCc
Q 007768 369 YWDTETGQV----------IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI----------TQEYDQH 428 (590)
Q Consensus 369 vWd~~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~----------~~~~~~h 428 (590)
|+|+...+. ...+. .+...+-.+.+.+...+.|.+++.||+|+.+|++.... +..+...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 999985221 11111 12222223333344558999999999999999986321 1112223
Q ss_pred CCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCC------------------cEEEEeecCCC--------C---ceeEE
Q 007768 429 LGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIP------------------VVIKYISEPHM--------H---SMPSI 478 (590)
Q Consensus 429 ~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~------------------~~~~~~~~~~~--------~---~i~~i 478 (590)
.-...|++++|.. .+|++|+.|-..++||.+.. .++.++...|. . .++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 3456789999865 47899999999999994311 12334433222 1 14567
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 479 SLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 479 ~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
+|+|+|.-|++.-..-.|++||+..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecC
Confidence 8999998888877777899998754
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=3.8e-17 Score=176.46 Aligned_cols=286 Identities=16% Similarity=0.260 Sum_probs=201.7
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccC---CCCeEEEEEcc--CCCEEEEEecCCeEEEEE
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH---SKAVRDISFCN--DGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h---~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd 371 (590)
+..++-..+.|+|- ...++++...-.|+|||. +.++++..|..+ ...|+.+.+-. |..++++|+.||.|+||+
T Consensus 1062 ~n~~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~-e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPF-EPQIAAADDRERIRVWDW-EKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred cCCCCCceeeecCC-CceeEEcCCcceEEEEec-ccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 33445666778888 778888887889999999 677777776544 45799999877 567899999999999996
Q ss_pred CC-----CCcEEEEecC------CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC-cCCceeEEEEe-
Q 007768 372 TE-----TGQVIRTFST------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFV- 438 (590)
Q Consensus 372 ~~-----t~~~~~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~-h~~~V~~i~~~- 438 (590)
-- +.+.+..+.. +.....+.+.+....+.+++ ++.-..|+|||......+..+.. ....|+++.-.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~-tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV-TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEe-cCCeeEEEEEecccceeEeecccCCCccceeecccc
Confidence 42 2233332211 11111233333333444444 44478999999998877776643 33456666554
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcE--EEEeecCCCCc--eeEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccc
Q 007768 439 DSNRRFVTSSDDKSLRVWEFGIPVV--IKYISEPHMHS--MPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~--~~~~~~~~~~~--i~~i~~sp~g~-~la~~s~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
..|+.|++|..||+|++||.+.... .......|... |..+.+.+.|- .|++|+.+|.|++||++......... .
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-i 1297 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-I 1297 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-e
Confidence 3468999999999999999986543 33333456666 89999998765 49999999999999998753332222 2
Q ss_pred cCccc-ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC-------CCcEEEEEEcCCCCCEEEEEeCCCc
Q 007768 514 AGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-------EGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 514 ~~~~~-~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-------~~~V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
..|.. .+..+++..+++...+|+|+. +.|.||++. |+.+..++.+ .+.+.|++||| -.-+||+|+.|.+
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADST 1374 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCce
Confidence 22211 234788999999999999998 999999974 4444444432 34679999999 5668899999999
Q ss_pred EEEc
Q 007768 586 IKYW 589 (590)
Q Consensus 586 I~iW 589 (590)
|.||
T Consensus 1375 V~iY 1378 (1387)
T KOG1517|consen 1375 VSIY 1378 (1387)
T ss_pred EEEe
Confidence 9987
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=2.8e-17 Score=168.68 Aligned_cols=152 Identities=18% Similarity=0.273 Sum_probs=108.0
Q ss_pred eecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE
Q 007768 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 337 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~ 337 (590)
++++++.|...++|..+........ .| -..+.+..-.|-|+.|+|....+|+++ ..|.++|||+ .+++.+.
T Consensus 94 LLAT~S~D~~VKiW~lp~g~~q~LS----ap---e~~~g~~~~~vE~l~fHpTaDgil~s~-a~g~v~i~D~-stqk~~~ 164 (1012)
T KOG1445|consen 94 LLATCSRDEPVKIWKLPRGHSQKLS----AP---EIDVGGGNVIVECLRFHPTADGILASG-AHGSVYITDI-STQKTAV 164 (1012)
T ss_pred hhhcccCCCeeEEEecCCCcccccC----Cc---ceeecCCceEEEEeecccCcCceEEec-cCceEEEEEc-ccCceee
Confidence 4489999999999988722111110 01 112334455789999999955555554 5689999999 6888999
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CcEEEEecCCCcceEEEEecCCCCCcEEEEEECC---CeEEE
Q 007768 338 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD---KKIVQ 413 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d---g~I~i 413 (590)
.+.+|...|.+..|+.||.+|++++.|..|+|||.+. ++.++....+....-..+.+-+...+++-+|-.. ..|++
T Consensus 165 el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~ 244 (1012)
T KOG1445|consen 165 ELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRA 244 (1012)
T ss_pred cccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeee
Confidence 9999999999999999999999999999999999875 4666666555444444444444433455555433 46788
Q ss_pred EeCCC
Q 007768 414 WDMNT 418 (590)
Q Consensus 414 wD~~t 418 (590)
||.+.
T Consensus 245 ~Dtr~ 249 (1012)
T KOG1445|consen 245 YDTRK 249 (1012)
T ss_pred eeccc
Confidence 88764
No 174
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=2.5e-17 Score=164.06 Aligned_cols=253 Identities=17% Similarity=0.191 Sum_probs=185.6
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe--eEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
-+..+..|+.+|.+|.|+|.+...+++.|+||+|++-|+ +... .+..+..-...+.++.|+.+...++.+..=|...
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~-~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~ 304 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF-EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN 304 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeee-cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceE
Confidence 356778999999999999998899999999999999999 3332 2223333456678889998888888888778999
Q ss_pred EEECCCCcE-EEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc----eEEEEcCcCCceeEEEEeCCCC
Q 007768 369 YWDTETGQV-IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 369 vWd~~t~~~-~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~----~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
+||++++.. ...+.. ...+..+.++|..+ .++++++.|++.+|||+|... ++...-.|...|++..|+|.+.
T Consensus 305 ~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p--~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 305 VIDLRTDGSEYENLRLHKKKITSVALNPVCP--WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred EEEeecCCccchhhhhhhcccceeecCCCCc--hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 999998765 332222 23455667776554 789999999999999998642 2233346999999999999999
Q ss_pred EEEEEeCCCcEEEEECC----CCcEEEEeecCCCC----ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007768 443 RFVTSSDDKSLRVWEFG----IPVVIKYISEPHMH----SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~----~~~~~~~~~~~~~~----~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
.|++.+.|..|+|||.. ...+...+...+.. ......|.|+..++++|-.-..|-|||-..++.+..+ .
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el---~ 459 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL---H 459 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec---c
Confidence 99999999999999983 33333344322221 2445689999999999999999999998877644322 2
Q ss_pred CcccccceEEEEEcCCCCEE-EEEcCCCcEEEEeCC
Q 007768 515 GHIVAGYACQVNFSPDGRFV-MSGDGEGKCWFWDWK 549 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l-~sgs~dg~I~iwd~~ 549 (590)
........+-..|+|-+..+ +.|+..|.|+||--+
T Consensus 460 ~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 460 DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CccccccccceeecccccceeccCCccceEEEEecC
Confidence 22212233347899988844 455578899988643
No 175
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.4e-17 Score=156.03 Aligned_cols=203 Identities=15% Similarity=0.252 Sum_probs=159.0
Q ss_pred EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007768 380 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
++.... ..++.|++.+ .+|++|+.||.|.|||+.+..+...+.+|..+|++++|+++|+.|+++|.|..|.+||+.
T Consensus 20 tld~~~-a~~~~Fs~~G---~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 20 TLDNPL-AECCQFSRWG---DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred eccCCc-cceEEeccCc---ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 344444 6688888766 589999999999999999999888999999999999999999999999999999999999
Q ss_pred CCcEEEEeecCCCCceeEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 460 IPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 460 ~~~~~~~~~~~~~~~i~~i~~sp~g~-~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
.+.+++.+. ...+|..+.|+|... .+++.-.+..-.+.++...........-.+. ......+..|.+.|++|++|.
T Consensus 96 ~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d-ln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 96 KGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGD-LNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred CCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccc-cccccccccccCCCCEEEEec
Confidence 999888884 567899999999643 3333334444444444432111111111111 122223346899999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCC-CcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 539 GEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..|.+.++|..+.+++..++... ..|..+.++. .+++|+.-+.|..||.|+
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYE 224 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEe
Confidence 99999999999999999998776 7889999988 788999999999999985
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=1.1e-15 Score=158.13 Aligned_cols=270 Identities=9% Similarity=0.143 Sum_probs=176.0
Q ss_pred EEEEeCCCcEEEEecCCCCe--eEEEeccCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECC-CCcE--EEEecCCCcce
Q 007768 315 ILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTE-TGQV--IRTFSTGKIPY 388 (590)
Q Consensus 315 L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~-t~~~--~~~~~~~~~~~ 388 (590)
+++...++.|.+|++...+. .+..+. +.+....++++|++++|++++ .++.|.+|++. ++.. +........+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44457789999999943343 445553 346678899999999887765 47899999996 3432 33333444556
Q ss_pred EEEEecCCCCCcEEEEEECCCeEEEEeCCCC----ceEEEEcCcCCceeEEEEeCCCCEEEEE-eCCCcEEEEECCCCcE
Q 007768 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKSLRVWEFGIPVV 463 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~----~~~~~~~~h~~~V~~i~~~p~~~~l~s~-s~Dg~I~iwdl~~~~~ 463 (590)
.+.+.+++. .++++...++.|.+|++.+. +.+..+. +.....+++++|++++++++ ..++.|.+||+.....
T Consensus 84 ~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 84 HISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred EEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 677776542 44555556899999999742 2233332 33456788999999988655 4569999999976432
Q ss_pred EEE-----eecCCCCceeEEEEcCCCCEEEEEEc-CCeEEEEEcCCc--e--eecccccccCc-ccccceEEEEEcCCCC
Q 007768 464 IKY-----ISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRER--F--QLNKKKRFAGH-IVAGYACQVNFSPDGR 532 (590)
Q Consensus 464 ~~~-----~~~~~~~~i~~i~~sp~g~~la~~s~-dg~I~iwd~~~~--~--~~~~~~~~~~~-~~~~~v~~v~~spdg~ 532 (590)
+.. ...+.......+.|+|++++|+++.. ++.|.+|++... . ........... ....+...+.|+|+|+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 211 11123345678999999999988876 899999999632 1 11111111111 0112334688999999
Q ss_pred EEEEEcC-CCcEEEEeCCCCe----EEEEEecCCCcEEEEEEcCCCCCEEEEEe-CCCcEEEcC
Q 007768 533 FVMSGDG-EGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 533 ~l~sgs~-dg~I~iwd~~t~~----~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~Dg~I~iWD 590 (590)
+|+++.. ++.|.+|++.... .+..+... .....+.|+| ++++|+++. .+++|.+|+
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~-dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH-SGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC-CCCEEEEEEccCCcEEEEE
Confidence 9998864 7899999985432 23333322 2346789999 555666555 589999983
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=7.4e-17 Score=158.64 Aligned_cols=283 Identities=17% Similarity=0.291 Sum_probs=193.1
Q ss_pred eecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC------
Q 007768 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN------ 331 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~------ 331 (590)
++++++.|+++|.|.........-. ..-..+..|..|...|++|+|+|+ |.+|+||+.+|.|.+|....
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~----~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGD----MKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDA 102 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCc----eeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccc
Confidence 6788999999999987655433211 223456788999999999999999 99999999999999997630
Q ss_pred -C--------CeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcE
Q 007768 332 -S--------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 332 -~--------~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 401 (590)
. ....+.+.+|...|.+++|+|++.++++++.|..+++||+..|+.+..+..+ +.+.-++|.|.+ .+
T Consensus 103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~---qy 179 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN---QY 179 (434)
T ss_pred cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh---hh
Confidence 1 2345677899999999999999999999999999999999999998877543 334455555543 46
Q ss_pred EEEEECCCeEEEEeCCCCceEEEEc-------------------CcCC----ceeEEEEeCCCCEEEEEeC----CC---
Q 007768 402 LLAGMSDKKIVQWDMNTKEITQEYD-------------------QHLG----AVNTITFVDSNRRFVTSSD----DK--- 451 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t~~~~~~~~-------------------~h~~----~V~~i~~~p~~~~l~s~s~----Dg--- 451 (590)
+++-+.|...+.+.+...+.+.... -|.. -...++|+|+|..|++.+. .+
T Consensus 180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~ 259 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVF 259 (434)
T ss_pred hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCcee
Confidence 7777777766666665433322211 0111 2345788899988887542 22
Q ss_pred --cEEEEECCC-CcEEEEeecCCCCceeEEEEcC------------------CCCEEEEEEcCCeEEEEEcCCceeeccc
Q 007768 452 --SLRVWEFGI-PVVIKYISEPHMHSMPSISLHP------------------NTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 452 --~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp------------------~g~~la~~s~dg~I~iwd~~~~~~~~~~ 510 (590)
..++|+-.. ..++..+. ....+...+.++| -+-.+++++ .+.|++||..+...+...
T Consensus 260 ~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v 337 (434)
T KOG1009|consen 260 RNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVV 337 (434)
T ss_pred eceeEeeccccccCceeecC-CCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEE
Confidence 234454322 12222222 1222333344443 223344444 567999999876555333
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEE
Q 007768 511 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
.. ++-..++.++|++||.+|+..+.||...+.-+...++-
T Consensus 338 ~n----ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 338 DN----IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ee----eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 22 23567889999999999999999999888777665543
No 178
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.2e-16 Score=150.30 Aligned_cols=233 Identities=14% Similarity=0.301 Sum_probs=174.0
Q ss_pred cccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEE-cCCCCCEEEEEeCCCcEEEEecCCC------
Q 007768 260 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVVNS------ 332 (590)
Q Consensus 260 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~-sp~~g~~L~sgs~Dg~I~iWd~~~~------ 332 (590)
+++..|...+.|-.... --...+-..|+.|.+.|..|.| +|..|+.+|+|+.|+++.||.-...
T Consensus 29 AtCSsDq~vkI~d~~~~---------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~ 99 (361)
T KOG2445|consen 29 ATCSSDQTVKIWDSTSD---------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG 99 (361)
T ss_pred eeccCCCcEEEEeccCC---------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc
Confidence 55666666666643111 1134577889999999999999 4677999999999999999975211
Q ss_pred --CeeEEEeccCCCCeEEEEEcc--CCCEEEEEecCCeEEEEECCCC------cEEEEec--------CCCcceEEEEec
Q 007768 333 --GKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETG------QVIRTFS--------TGKIPYVVKLNP 394 (590)
Q Consensus 333 --~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~------~~~~~~~--------~~~~~~~~~~~~ 394 (590)
-....++......|++|.|.| -|-.|++++.||.||||+.-.- .....+. ......|+.|++
T Consensus 100 ~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~ 179 (361)
T KOG2445|consen 100 RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP 179 (361)
T ss_pred ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc
Confidence 123456777888999999999 6789999999999999986432 2222333 233445778887
Q ss_pred CCCCCcEEEEEECC-----CeEEEEeCCCC----ceEEEEcCcCCceeEEEEeCCC----CEEEEEeCCCcEEEEECCCC
Q 007768 395 DDDKQNILLAGMSD-----KKIVQWDMNTK----EITQEYDQHLGAVNTITFVDSN----RRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 395 ~~~~~~~lvsg~~d-----g~I~iwD~~t~----~~~~~~~~h~~~V~~i~~~p~~----~~l~s~s~Dg~I~iwdl~~~ 461 (590)
......+|++|+.+ +.++||....+ ..+.++..|..+|+.|+|.|+- ..|++++.|| |+||.+...
T Consensus 180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~ 258 (361)
T KOG2445|consen 180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVA 258 (361)
T ss_pred ccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeec
Confidence 76667788888876 57888876543 3455677999999999999963 3689999999 999998631
Q ss_pred -----------------cEEEEe--ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 462 -----------------VVIKYI--SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 462 -----------------~~~~~~--~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
..+..+ ...|.+.|..+.|+-.|..|++.+.||.|++|...
T Consensus 259 ~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 259 RSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 112222 24688899999999999999999999999999764
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=153.22 Aligned_cols=238 Identities=20% Similarity=0.359 Sum_probs=178.8
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEECCCC--------------cEEEEecCCCcceEEEEe----cCCCCCcEEEEEEC
Q 007768 346 VRDISFCNDGTKFLTASYDKNIKYWDTETG--------------QVIRTFSTGKIPYVVKLN----PDDDKQNILLAGMS 407 (590)
Q Consensus 346 V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~lvsg~~ 407 (590)
...+.|+|||..|++-+.|..+.+|++-.. .....+..+..++..+|. ...+..+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456789999999999999999999987421 122334445555555554 23345689999999
Q ss_pred CCeEEEEeCCCCceEEEEcC--cC---CceeEEEEeCCCCEEEEEeCCCcEEEEEC-CCCcEEEEe------ecCCCCce
Q 007768 408 DKKIVQWDMNTKEITQEYDQ--HL---GAVNTITFVDSNRRFVTSSDDKSLRVWEF-GIPVVIKYI------SEPHMHSM 475 (590)
Q Consensus 408 dg~I~iwD~~t~~~~~~~~~--h~---~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl-~~~~~~~~~------~~~~~~~i 475 (590)
+.-|++||.-+|++...+.. |. .+..+++|+|+|..|++|. ...|++||+ +.+...... .....+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998877754 33 3457899999999998876 578999999 433322111 11235668
Q ss_pred eEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCC-Ce
Q 007768 476 PSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKS-CK 552 (590)
Q Consensus 476 ~~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~t-~~ 552 (590)
.+++|+|-. +.+++++....+-||.-..+..+ ..+.+| .+.|+.++|.++|+.|++|.. +-.|..||++. ..
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl---~llggh--~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL---QLLGGH--GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCce---eeeccc--CCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 899999965 58999999999888877665444 444566 678999999999999999984 67899999975 56
Q ss_pred EEEEEecCCC-cEEEE--EEcCCCCCEEEEEeCCCcEEEcC
Q 007768 553 VFRTLKCHEG-VCIGC--EWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 553 ~~~~l~~h~~-~V~~v--~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++..+..|.+ .-..| ...| .+.+|++|+.||.|++||
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWD 325 (406)
T ss_pred hhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEe
Confidence 7777877765 22333 4456 677999999999999997
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=2.4e-16 Score=168.44 Aligned_cols=246 Identities=18% Similarity=0.279 Sum_probs=180.2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCee-E----EEeccCCCCeEEEEEccCC--CEEEEEecCCeEEEEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC-M----RTYMGHSKAVRDISFCNDG--TKFLTASYDKNIKYWD 371 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~-~----~~~~~h~~~V~~l~fspdg--~~l~s~s~Dg~I~vWd 371 (590)
...|+|++|+|.+.++|+.|+.+|.|.+||+...... . .....|..+|+.+.|..+- .-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4679999999999999999999999999999544432 1 1234689999999998744 4599999999999998
Q ss_pred CCCCcEEE-------------EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC---CC-----ceEEEEcCcCC
Q 007768 372 TETGQVIR-------------TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TK-----EITQEYDQHLG 430 (590)
Q Consensus 372 ~~t~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---t~-----~~~~~~~~h~~ 430 (590)
++.-.... .........++.|.+.. .+.|++|+..|.|..-+-. .. +....+..|.+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~--p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD--PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCC--CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 86433211 11222334556666654 4789999999999873332 22 12335667899
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECC-CCcEEEEeecCCCCceeEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeec
Q 007768 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~-~~~~~~~~~~~~~~~i~~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
+|+++.++|-+..++.++.|.+++||.-. ...++..+ ..+...+++++|+|.. ..|+++..+|.|.+||+.....-.
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL-DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhh-hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 99999999988766666669999999987 44444333 3466679999999975 578888889999999997543222
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
... ..-. ....+.+.|++.|++|++|+..|.+++|++..
T Consensus 479 v~s-~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLS-QKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc-cccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 111 1111 34566788999999999999999999999853
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.1e-15 Score=163.54 Aligned_cols=287 Identities=14% Similarity=0.218 Sum_probs=205.9
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC---CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
.|+..++|.+++|. +.++++|..||.|.+|.-.. .......+.-|...|.+++|+++|.+|++|+..|.+.+|.++
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 47777999999999 99999999999999996422 224456677899999999999999999999999999999999
Q ss_pred CCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC-----------cCCceeEEEEeCCCC
Q 007768 374 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-----------HLGAVNTITFVDSNR 442 (590)
Q Consensus 374 t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~-----------h~~~V~~i~~~p~~~ 442 (590)
+++....-..+..+..+.+++++ .+......|+.|.+....+.+....+.+ ..+-.+.++++|.-+
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds---~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDS---DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCC---CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 99844444556777777777665 4677888899999998876654444332 234467788999778
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeec----C------CCCceeEEEEcCCCCEEEEEE--------cC--CeEEEEEcC
Q 007768 443 RFVTSSDDKSLRVWEFGIPVVIKYISE----P------HMHSMPSISLHPNTNWLAAQS--------LD--NQILIYSTR 502 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~----~------~~~~i~~i~~sp~g~~la~~s--------~d--g~I~iwd~~ 502 (590)
.++..+..|.|.+||+-+...+..+.. . +.-.+++++.+-.|.++++.- .| ..+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999987766544421 1 122466777777899998874 22 347778654
Q ss_pred Cceeeccc--ccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCC----------CeEEEEEecCCCcEEEEEE
Q 007768 503 ERFQLNKK--KRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 503 ~~~~~~~~--~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~t----------~~~~~~l~~h~~~V~~v~~ 569 (590)
....-..+ .....|.....++ +.+++- ...+++++.||.++||-+.. +.+...-.-|..++++++|
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat-~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVAT-IFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEE-EEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 43222111 2223343222222 333333 33789999999999998732 2222222237889999999
Q ss_pred cCCCCCEEEEEeCCCcEEEcC
Q 007768 570 HPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 570 sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+. ++ -++++|.|++|.|||
T Consensus 518 s~-dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 518 SQ-DG-SLLAVSFDDTITIWD 536 (792)
T ss_pred cC-CC-cEEEEecCCEEEEec
Confidence 98 55 477788899999998
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=1.5e-15 Score=143.51 Aligned_cols=313 Identities=16% Similarity=0.280 Sum_probs=213.1
Q ss_pred ecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEc--CCCCCEEEEEeC----CCcEEEEecCCC
Q 007768 259 HGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFF--PKYGHLILSAGM----DTKVKIWDVVNS 332 (590)
Q Consensus 259 ~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~s--p~~g~~L~sgs~----Dg~I~iWd~~~~ 332 (590)
......|.++|.+-.+-+... .......+.+.++..|- ++.++.|+ |+...+|+.|+. .+.|.|-.+...
T Consensus 8 ap~~i~~q~~~~~~s~i~~~~---~~~~~r~~eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~ 83 (364)
T KOG0290|consen 8 APNHIQDQQGRTYSSPIQRSS---PEGNPRRKEIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED 83 (364)
T ss_pred CcchhhhhhccccCCcccccC---cccCcccceEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC
Confidence 344455666666543322111 11111223355665543 57888888 444678888874 467777766433
Q ss_pred CeeEEE--eccCCCCeEEEEEccCC-----CEEEEEecCCeEEEEECCC--CcEE--EEec----CCCcceEEEEecCCC
Q 007768 333 GKCMRT--YMGHSKAVRDISFCNDG-----TKFLTASYDKNIKYWDTET--GQVI--RTFS----TGKIPYVVKLNPDDD 397 (590)
Q Consensus 333 ~~~~~~--~~~h~~~V~~l~fspdg-----~~l~s~s~Dg~I~vWd~~t--~~~~--~~~~----~~~~~~~~~~~~~~~ 397 (590)
...+.. -..|.-+++.+.|.|+. .+|++++ ..+|+|.+.. .+.. ..+. .........|.++.-
T Consensus 84 s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~ 161 (364)
T KOG0290|consen 84 SGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV 161 (364)
T ss_pred CCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC
Confidence 322222 24789999999999975 3566654 5899999873 2221 1111 122223445555556
Q ss_pred CCcEEEEEECCCeEEEEeCCCCc---eEEEEcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEeec-CC-
Q 007768 398 KQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISE-PH- 471 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~~---~~~~~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~- 471 (590)
..+++.+++-|-+..|||+.++. ....+-.|...|..|+|...+ ..|++.+.||+||+||++...-...+.+ +.
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 66899999999999999999863 355677899999999999754 4799999999999999987654333332 22
Q ss_pred CCceeEEEEcCC-CCEEEEEEcC-CeEEEEEcCCceeecccccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeC
Q 007768 472 MHSMPSISLHPN-TNWLAAQSLD-NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 472 ~~~i~~i~~sp~-g~~la~~s~d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~ 548 (590)
..+...++|++. -+++|+-..| ..|.|.|++... .....+.+| .+.|..++|.|. ...|++++.|..+.|||+
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H--~a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNH--QASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcC--cccccceEecCCCCceeeecCCcceEEEEec
Confidence 567888999875 4677776665 569999998643 345667777 577899999995 567999999999999999
Q ss_pred CCCeE------EEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 549 KSCKV------FRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 549 ~t~~~------~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
.+.-. +..+. -.+.|..+.|++..+..|+.|..
T Consensus 318 ~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 318 QQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 76322 22233 45679999999877788887764
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=1.5e-15 Score=162.43 Aligned_cols=262 Identities=15% Similarity=0.225 Sum_probs=184.3
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCcE-----EEEecCCCcc--eEEEE
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV-----IRTFSTGKIP--YVVKL 392 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~-----~~~~~~~~~~--~~~~~ 392 (590)
++.+.||++.....+-..+. -...|+|+.|+| +..+++.|+++|.|.+||++.+.. +......+.. ..+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 34799999966655555554 467899999999 778899999999999999987755 2222233333 34444
Q ss_pred ecCCCCCcEEEEEECCCeEEEEeCCCCce-EE-----EEc------CcCCceeEEEEeCC-CCEEEEEeCCCcEEEEEC-
Q 007768 393 NPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQ-----EYD------QHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEF- 458 (590)
Q Consensus 393 ~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-~~-----~~~------~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl- 458 (590)
..+..+ .-|++++.||.|..|+++.-.. +. ... .....++++.|.+. ...|++|+++|.|.--+.
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 444443 5688999999999998875322 11 111 12346889999875 457999999998877332
Q ss_pred --CCCc----EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC-CceeecccccccCcccccceEEEEEcCCC
Q 007768 459 --GIPV----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 459 --~~~~----~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
+... ........|.++|.++.++|-+..++..+.|.+++||+.. ....+ ..+..+ ..++.+++|||-.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl---~~~~~~--~~~v~~vaWSptr 453 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL---LSLDSS--PDYVTDVAWSPTR 453 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc---hhhhhc--cceeeeeEEcCcC
Confidence 2222 1121223578899999999987666555559999999876 32222 222222 4558899999965
Q ss_pred -CEEEEEcCCCcEEEEeCCC--CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 532 -RFVMSGDGEGKCWFWDWKS--CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 532 -~~l~sgs~dg~I~iwd~~t--~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+++++.+|.|.|||+.. ..++.+.+.+....+.+.|++ .+.+|+.|...|.|.+|+
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEE
Confidence 4678888999999999854 556666766666667778887 788999999999999985
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=4.8e-16 Score=166.24 Aligned_cols=234 Identities=14% Similarity=0.135 Sum_probs=165.7
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCcEEEEecCCCcceEEEEecCCC
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 397 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
+..|.|||. ++...+.+..|...+.+.+|+|+|+.|+.++.+ ..|.+||+.+++...............|+|++.
T Consensus 183 ~~~i~i~d~--dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADY--DGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECC--CCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 468999998 344456677888899999999999999988764 369999999886533322222334567777553
Q ss_pred CCcEEEEEECCCeE--EEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCc-EEEEeecCCCC
Q 007768 398 KQNILLAGMSDKKI--VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPV-VIKYISEPHMH 473 (590)
Q Consensus 398 ~~~~lvsg~~dg~I--~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~-~~~~~~~~~~~ 473 (590)
.++++...+|.+ ++||+.++.. ..+..+...+....|+|+|+.|+.++ .++...||++.... ....+ .+..
T Consensus 261 --~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~ 335 (429)
T PRK01742 261 --RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG 335 (429)
T ss_pred --EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC
Confidence 344445567764 5557766654 44556777788999999999877665 56888888775422 22222 1222
Q ss_pred ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC--CCC
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW--KSC 551 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~--~t~ 551 (590)
.++.|+|+|++|++.+.++ +.+||+.++......... ....+.|+|+|++|+.++.+|.+.+|.+ .+|
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 4578999999998887754 666998776432211111 1124789999999999999998888875 468
Q ss_pred eEEEEEecCCCcEEEEEEcC
Q 007768 552 KVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~~sp 571 (590)
+....+..|.+.+...+|+|
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CceEEccCCCCCCCCcccCC
Confidence 88888988998899999998
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=9.2e-17 Score=163.93 Aligned_cols=250 Identities=16% Similarity=0.241 Sum_probs=186.5
Q ss_pred CCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 247 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 326 (590)
Q Consensus 247 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~i 326 (590)
+....++..+.-..++..|.....|... .. ....-..-+.+.+|++|.++|.|+++.+. ++.+++|+.||+|+.
T Consensus 297 ir~l~~~~sep~lit~sed~~lk~WnLq--k~---~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 297 IRALAFHPSEPVLITASEDGTLKLWNLQ--KA---KKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRC 370 (577)
T ss_pred hhhhhcCCCCCeEEEeccccchhhhhhc--cc---CCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCceeee
Confidence 3445566777777778888888889771 11 11122334678999999999999999998 999999999999999
Q ss_pred EecCC---------CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec---CCCcceEEEEec
Q 007768 327 WDVVN---------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLNP 394 (590)
Q Consensus 327 Wd~~~---------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~ 394 (590)
|++.. ......++.||...|+.+++++....|++|+.||++++|+...... .+|. ....+..+.+..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeecc
Confidence 96631 2244567889999999999999888999999999999999877666 3332 233444554443
Q ss_pred CCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC-------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 007768 395 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~-------h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~ 467 (590)
.. ..+.++...-+.-.++++.....+..+.. -...++-+.++|.+.+.+++..|+.|+++|..++..+...
T Consensus 450 s~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 450 SR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 32 12344444444444555555544444422 1235778899999999999999999999999998887766
Q ss_pred ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007768 468 SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 468 ~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~ 506 (590)
. .|...++++++.|+|-+|++++.|+.|++|.+....+
T Consensus 528 ~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 528 V-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred e-eccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 5 4888999999999999999999999999999866443
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=4.7e-16 Score=152.35 Aligned_cols=227 Identities=18% Similarity=0.276 Sum_probs=166.5
Q ss_pred CCcEEEEecCCCCee---EEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCcEEEEec------CCC--cce
Q 007768 321 DTKVKIWDVVNSGKC---MRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFS------TGK--IPY 388 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~---~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~------~~~--~~~ 388 (590)
.|...+--+...++. .-.+.||.++|.+++|+| +...|||||.|.+|.||.+-.+-....+. .+| ...
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG 135 (472)
T ss_pred CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE
Confidence 344444444333432 234578999999999999 77889999999999999986554332221 233 334
Q ss_pred EEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007768 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~ 468 (590)
.+.|+|. ..++|++++.|..|.+|++.+++.+.++. |...|.++.|+.+|.+|++++.|+.|+|||.+.+..+..-.
T Consensus 136 ~V~wHPt--A~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 136 LVQWHPT--APNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred EEeeccc--chhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence 5666665 45899999999999999999999888887 99999999999999999999999999999999998887763
Q ss_pred cCCCCceeEEEEcCCCCEEEEEE---cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE-EEcCCCcEE
Q 007768 469 EPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEGKCW 544 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~la~~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~-sgs~dg~I~ 544 (590)
......-..+.|-.++.++.+|. ++.++-+||..+.........+.. +..|.---|.+|.++|+ +|-.|+.|+
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt---SnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT---SNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc---CCceEEeeecCCCCEEEEEecCCcceE
Confidence 32333455667777888555553 467899999766443322222222 23444456788888876 455899999
Q ss_pred EEeCCCCeE
Q 007768 545 FWDWKSCKV 553 (590)
Q Consensus 545 iwd~~t~~~ 553 (590)
-|.+....+
T Consensus 290 YyEit~d~P 298 (472)
T KOG0303|consen 290 YFEITNEPP 298 (472)
T ss_pred EEEecCCCc
Confidence 999887664
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=3.6e-18 Score=180.24 Aligned_cols=241 Identities=23% Similarity=0.370 Sum_probs=189.4
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeE
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 367 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I 367 (590)
..+.++.+.||...|+|+.|... |.++++|+.|..|+||.. ++..++....||.+.|++++.+.+..+++++|.|..|
T Consensus 179 kmk~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~-et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSM-ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeec-cchhhhccCCCCccccchhccchhhhhhhhcccCceE
Confidence 34567778899999999999998 999999999999999997 7899999999999999999998887778888877777
Q ss_pred EEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007768 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
++|.+.. +.++..+.+|.+.|++|+|+|-. +.
T Consensus 257 rvWrl~~--------------------------------------------~~pvsvLrghtgavtaiafsP~~----ss 288 (1113)
T KOG0644|consen 257 RVWRLPD--------------------------------------------GAPVSVLRGHTGAVTAIAFSPRA----SS 288 (1113)
T ss_pred EEEecCC--------------------------------------------CchHHHHhccccceeeeccCccc----cC
Confidence 7776554 34455567899999999999865 78
Q ss_pred eCCCcEEEEECCCCcEEEEeec----CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceE
Q 007768 448 SDDKSLRVWEFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~----~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
+.||++++||.+ ...+.+... ....-+.++.+..++.-+++++.|+.-..|.+.... .+ ...+.
T Consensus 289 s~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------~~--~~~li 356 (1113)
T KOG0644|consen 289 SDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------WR--SNLLI 356 (1113)
T ss_pred CCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------hh--ccceE
Confidence 899999999998 122222211 123446677788888889999999988887654211 11 01111
Q ss_pred EEEEcCCC-CEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 524 QVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
-+.++.+- .+.+++-.+-.+++|++.+|.+++.+.+|...+..+.+||.+.....++|.||.+.|||
T Consensus 357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 12222222 46667777889999999999999999999999999999999999999999999999998
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.5e-14 Score=149.61 Aligned_cols=251 Identities=12% Similarity=0.184 Sum_probs=164.8
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEE-eCCCcEEEEecCCCCee--EEEeccCCCCeEEEEEccCCCEEEEEec-CCe
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSA-GMDTKVKIWDVVNSGKC--MRTYMGHSKAVRDISFCNDGTKFLTASY-DKN 366 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sg-s~Dg~I~iWd~~~~~~~--~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~ 366 (590)
++.++. +.+....++++|+ +++|+++ ..++.|.+|++...+.. +... ........++|+|++++|++++. ++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCe
Confidence 445554 3456788999999 7777655 45889999999533332 2222 23345678999999999998875 789
Q ss_pred EEEEECCC-C---cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE-----Ec-CcCCceeEEE
Q 007768 367 IKYWDTET-G---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-----YD-QHLGAVNTIT 436 (590)
Q Consensus 367 I~vWd~~t-~---~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~-----~~-~h~~~V~~i~ 436 (590)
|.+|++.+ + ..+..+.....+..+.+.+++ ..++++...++.|.+||+.+...+.. .. ........+.
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred EEEEEECCCCCCCCceeeccCCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 99999974 2 233333333345566666643 35566777789999999986332211 11 1233467899
Q ss_pred EeCCCCEEEEEeC-CCcEEEEECCC--Cc--EEEEeec-CC----CCceeEEEEcCCCCEEEEEEc-CCeEEEEEcCCce
Q 007768 437 FVDSNRRFVTSSD-DKSLRVWEFGI--PV--VIKYISE-PH----MHSMPSISLHPNTNWLAAQSL-DNQILIYSTRERF 505 (590)
Q Consensus 437 ~~p~~~~l~s~s~-Dg~I~iwdl~~--~~--~~~~~~~-~~----~~~i~~i~~sp~g~~la~~s~-dg~I~iwd~~~~~ 505 (590)
|+|++++++++.. +++|.+|++.. +. .+..+.. +. ......+.++|++++|+++.. ++.|.+|++....
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 9999999988876 89999999973 22 2222221 11 112235889999999998854 6899999985432
Q ss_pred -eecccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCC
Q 007768 506 -QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWK 549 (590)
Q Consensus 506 -~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~ 549 (590)
.+........ ......+.|+|+|++|++++. ++.|.+|++.
T Consensus 262 ~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 262 SVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CeEEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 1111111111 123346899999999998775 8899999874
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=3.7e-14 Score=138.40 Aligned_cols=236 Identities=14% Similarity=0.225 Sum_probs=181.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC--CeEEEEECCCCc
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQ 376 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D--g~I~vWd~~t~~ 376 (590)
...+..+.|..+ ..+|..|+.|| .++|+...-.++.. .......|.-+-|+. .+++..+.+ +.+++.++..+.
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc
Confidence 345777778887 78888888888 57888743333221 112233466666764 466665554 569999999999
Q ss_pred EEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC---cCCceeEEEEeCCCCEEEEE--eCCC
Q 007768 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---HLGAVNTITFVDSNRRFVTS--SDDK 451 (590)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~---h~~~V~~i~~~p~~~~l~s~--s~Dg 451 (590)
.+..+...+.+.++.++.. .|+++-.+. |+|||+++.+++.++.. +...+.++.+++.+.+++.- ...|
T Consensus 80 ~ICe~~fpt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK-----RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred eEEEEecCCceEEEEEccc-----eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 9999988888888888763 355555444 99999999999888754 44557777777777788753 3468
Q ss_pred cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007768 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
.|.|||..+-+.+..+. .|.+.+.+++|+++|.+||+++..|+ |+||.+.++..+..+.+ -.....|.+++|+|+
T Consensus 154 dV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR---G~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR---GTYPVSIYSLSFSPD 229 (391)
T ss_pred eEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC---CceeeEEEEEEECCC
Confidence 99999999999888887 69999999999999999999999987 79999999877755443 223567889999999
Q ss_pred CCEEEEEcCCCcEEEEeCC
Q 007768 531 GRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 531 g~~l~sgs~dg~I~iwd~~ 549 (590)
+++|++.+..++|+||.+.
T Consensus 230 s~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCeEEEecCCCeEEEEEec
Confidence 9999999999999999874
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=1.8e-15 Score=142.82 Aligned_cols=253 Identities=16% Similarity=0.244 Sum_probs=185.2
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC-------CcEEEEecCCCC--------eeEEEec-cCCCCeEEEEEccCCC
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD-------TKVKIWDVVNSG--------KCMRTYM-GHSKAVRDISFCNDGT 356 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~D-------g~I~iWd~~~~~--------~~~~~~~-~h~~~V~~l~fspdg~ 356 (590)
.+|..|.+.|..|+-+|.+..+|+++..+ ..+.||.+.+.. +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45667889999999999877888887653 247799985332 2233333 4556899999999999
Q ss_pred EEEEEecCCeEEEEECCCCcE-EEEecC------CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-cCc
Q 007768 357 KFLTASYDKNIKYWDTETGQV-IRTFST------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQH 428 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~-~~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-~~h 428 (590)
.|++-. |..|.+|++..+.. +..+.. .+....-+|+|..+. + -++...|+++..||+|+......+ ..|
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-n-qv~tt~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-N-QVATTSDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc-c-eEEEeCCCcEEEEEccchhhhcchhhhh
Confidence 998876 88999999988765 332221 223345667776543 3 444556899999999998766655 578
Q ss_pred CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCC-CEEEEEEcCCeEEEEEcCCcee
Q 007768 429 LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 429 ~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~ 506 (590)
...|..+.|+|+.. +|+++++||.|+|||.+..+....-..+|.+.+.++.|+|.. .+|++++.|..|.+|-...-..
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 88999999999866 578999999999999998766655556799999999999974 6788999999999986533110
Q ss_pred ---------------------e-----cccccccCcccccceEEEEEcCCCCE-EEEEcCCCcEEEEeCCC
Q 007768 507 ---------------------L-----NKKKRFAGHIVAGYACQVNFSPDGRF-VMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 507 ---------------------~-----~~~~~~~~~~~~~~v~~v~~spdg~~-l~sgs~dg~I~iwd~~t 550 (590)
. ..+.++..| ...|.+++||.-..+ +++-+.||++.|=.+..
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh--EDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH--EDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccCcchhhHHhccccccccccccccc--ccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0 011233344 456888999886666 56778999998876543
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.9e-15 Score=147.68 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=150.0
Q ss_pred eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 007768 388 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 388 ~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~ 467 (590)
.++++..++ ..+++|+.||++|+|+..+...+.....|.+.|.++.|+|+++.|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~g---s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDG---SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCC---CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 566777654 579999999999999988888888888899999999999999999999999 8999999998766655
Q ss_pred e-cCCCCceeEEEEcCCC---CE--EEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007768 468 S-EPHMHSMPSISLHPNT---NW--LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 468 ~-~~~~~~i~~i~~sp~g---~~--la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
. ......+..+.|+.++ .+ ++.....+.|+.|++.....-...+..+.......|.+++.|++|++++.|+.+|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 4 2334456677787766 33 3333344667777764322211111111111124678899999999999999999
Q ss_pred cEEEEeCCCCeEEEEEe-cCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 542 KCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 542 ~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
.|-|++..+.++++.++ +|...|+.+.|+| +.+++++.+.|..+.|
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAV 350 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeE
Confidence 99999999998887765 7999999999999 6778888888877665
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=5.5e-15 Score=141.57 Aligned_cols=245 Identities=18% Similarity=0.254 Sum_probs=187.4
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
+.|.---.+|+|.+|+++ +..+|.+.....|.||...... +..+++..|...|++|+|+|..+.|++|+.|+.-+||
T Consensus 4 ~~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 344445678999999999 8999999999999999884333 6788999999999999999999999999999999999
Q ss_pred ECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
....+.. -+....+..+..+++++.|+|.++.|++||..
T Consensus 83 ~~~~~~~-----------------------------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 83 TQPSGGT-----------------------------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred ccCCCCe-----------------------------------------eccceeEEEeccceeeEeecCcCceEEeccCc
Confidence 7632111 11223344578899999999999999999999
Q ss_pred CcEEEEECCCCcE---EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce--------------eeccc-cc
Q 007768 451 KSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--------------QLNKK-KR 512 (590)
Q Consensus 451 g~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~--------------~~~~~-~~ 512 (590)
..|.||-+..... .+.+..+....|.++.|+|++-+|++|+.|+..++|+.--.. .+..+ ..
T Consensus 122 r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 122 RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred cEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 9999998865543 245566788899999999999999999999999999742110 00000 01
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe-EEEEEecCCCcEEEEEEcCCCCCEEEEEeCC
Q 007768 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~-~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
+. ...+++..+.|+|+|..|+-.+.|+.+.+-|..... .+..+..-.-+..++.|.. + ..++.+|.|
T Consensus 202 ~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is-e-~~vv~ag~~ 269 (361)
T KOG1523|consen 202 AS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS-E-NSVVAAGYD 269 (361)
T ss_pred hc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec-C-CceeecCCC
Confidence 11 236789999999999999999999999999987654 3444444446778888865 2 345555555
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=157.93 Aligned_cols=242 Identities=17% Similarity=0.259 Sum_probs=181.2
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
.++.+++||...|+|++|+.+ |++++||+.|..|.||+-...+. ..+ .|...|.|+.|+|-...|++|+- ...-+
T Consensus 44 ~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~--LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFgl 118 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGI--LKY-SHNDAIQCMSFNPITHQLASCSL-SDFGL 118 (1081)
T ss_pred ccccccccccceEEEEEEccC-CceeccCCCceeEEEecccccce--eee-ccCCeeeEeecCchHHHhhhcch-hhccc
Confidence 567899999999999999999 99999999999999998633332 222 69999999999999899999986 45678
Q ss_pred EECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc---CcCCceeEEEEeCCC-----
Q 007768 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAVNTITFVDSN----- 441 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~---~h~~~V~~i~~~p~~----- 441 (590)
|..+.....+ ......++++++..+ +.+++.|..+|+|.+-+-. ++....+. +...+|.+|+|+|..
T Consensus 119 WS~~qK~V~K---~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 119 WSPEQKSVSK---HKSSSRIICCSWTND-GQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred cChhhhhHHh---hhhheeEEEeeecCC-CcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence 8776433221 223334555555543 4799999999999998543 43333333 467899999999863
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
..+++.....++.+|.+.....-+.- .......|+.+.++|.+++.|+.|+.+.+|.-. +-.+... .. ...+
T Consensus 194 di~aV~DW~qTLSFy~LsG~~Igk~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv---g~--~D~W 265 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLSGKQIGKDR--ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV---GE--QDSW 265 (1081)
T ss_pred ceEEEEeccceeEEEEecceeecccc--cCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec---cc--ccee
Confidence 36778888888888887543222111 233456789999999999999999999999653 3333222 22 2678
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
|..++..|++++++.|+.||+|-.|++-
T Consensus 266 IWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 266 IWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999999999999999999999863
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=8.3e-16 Score=152.39 Aligned_cols=198 Identities=16% Similarity=0.321 Sum_probs=159.5
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec
Q 007768 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 303 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
.+++|+.+ |..|++|+.||+++||+. .....+.....|...|.++.|+|||.+|++.+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~-Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEW-PSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEec-CcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 67899999 899999999999999998 4667777778899999999999999999999999 99999999997776655
Q ss_pred CCC---cceEEEEecCCCCCcEEEEEE--CCCeEEEEeCCCCce-----EEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007768 383 TGK---IPYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEI-----TQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 383 ~~~---~~~~~~~~~~~~~~~~lvsg~--~dg~I~iwD~~t~~~-----~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
... ....+.|..++.+..+++++. ..+.|+.||+....- ......-...|++++.+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 322 233556666554444444443 346677776643211 1111123357999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
|.|++....+.+..+...|...|+.+.|+|+.++++..+.+..+.+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999999999999999999999999999999987754
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.2e-15 Score=145.46 Aligned_cols=256 Identities=15% Similarity=0.286 Sum_probs=181.9
Q ss_pred cceEEEecCCCCCeeEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCee-EEEeccCC-CCeEEEEEccCCCEEEEEec--
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMDTKVKIWDVVNSGKC-MRTYMGHS-KAVRDISFCNDGTKFLTASY-- 363 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~-~g~~L~sgs~Dg~I~iWd~~~~~~~-~~~~~~h~-~~V~~l~fspdg~~l~s~s~-- 363 (590)
.+.+..|++|...++.++|... +++.+.+|+.||+|++||++...+. ...+..|. .+..|++.+..++.+++|..
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~ 139 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT 139 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence 3477889999999999999884 5899999999999999999644433 33455555 56778888778888888753
Q ss_pred --CCeEEEEECCCCcE-EEEecC--CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc----eEEEEcCcCCceeE
Q 007768 364 --DKNIKYWDTETGQV-IRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVNT 434 (590)
Q Consensus 364 --Dg~I~vWd~~t~~~-~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~----~~~~~~~h~~~V~~ 434 (590)
+-.|.+||++..+. +..+.. ...+..++|+|... ++|++|+.||.|.+||+.... ++..+ .|...|.+
T Consensus 140 ~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p--nlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~ 216 (376)
T KOG1188|consen 140 RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP--NLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHL 216 (376)
T ss_pred cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC--CeEEeecccceEEeeecCCCcchhhHHHhh-cccceeee
Confidence 67899999998876 666544 44567777877654 899999999999999997642 23333 47788999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEeecCCC-----------CceeEEEEcCCCCEEEEEEc-CCeEEEEEc
Q 007768 435 ITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-----------HSMPSISLHPNTNWLAAQSL-DNQILIYST 501 (590)
Q Consensus 435 i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~-----------~~i~~i~~sp~g~~la~~s~-dg~I~iwd~ 501 (590)
+.|+..+ ++|.+-+...+..+|+++.+.....+..+.. ..+.......+...+++++. -|...++-+
T Consensus 217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~ 296 (376)
T KOG1188|consen 217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL 296 (376)
T ss_pred eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence 9999776 4688888999999999987765444432211 11111111223455555554 455555543
Q ss_pred ---CCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 502 ---RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 502 ---~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.++........+.++. ...|.++.|...+.++++|+.||.|.+|..
T Consensus 297 ~~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 3333444444555532 455677888888999999999999999985
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=2.4e-15 Score=152.28 Aligned_cols=209 Identities=17% Similarity=0.255 Sum_probs=163.9
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
...|+.++.||.+.|-+ ..++.-+.+..|.+.|.+-.|+|+|.-|++++.||.|++|.-...-.....+....++|++
T Consensus 75 ~d~~~i~s~DGkf~il~--k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN--KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEec--ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 46788999999999987 4778888899999999999999999999999999999999854332222234567788999
Q ss_pred EecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 007768 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 471 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~ 471 (590)
|.|+.. +++++.+ +.+.|=-+.....+...+.|.+-|.++.|++..+.+++|+.|-..+|||-...... -..+|
T Consensus 153 W~p~S~--~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf--~S~~~ 226 (737)
T KOG1524|consen 153 WAPNSN--SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF--TSAAE 226 (737)
T ss_pred ECCCCC--ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc--cCChh
Confidence 988765 4555544 56666666666667778899999999999999999999999999999996543332 23478
Q ss_pred CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007768 472 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
..+|++++|.|+ ..+++++. +++++ . ....+.|..++||+||..+++|+..|.+.+=
T Consensus 227 ey~ITSva~npd-~~~~v~S~-nt~R~---------------~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 227 EYAITSVAFNPE-KDYLLWSY-NTARF---------------S-SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ccceeeeeeccc-cceeeeee-eeeee---------------c-CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999999 66666553 23331 1 1124678889999999999999999987654
No 197
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=2.2e-15 Score=140.67 Aligned_cols=276 Identities=16% Similarity=0.225 Sum_probs=185.2
Q ss_pred cccccccccceeecCCccccccCCCccCCcceEEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEE
Q 007768 260 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT 338 (590)
Q Consensus 260 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~-gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~ 338 (590)
.....+.++| +..........-|++...+.+..|+ .|+..|+.+.--|+ ..|.+-+.|+.+.+|++. ....+
T Consensus 18 ~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ia-~s~~i-- 90 (323)
T KOG0322|consen 18 TSVLFQANER--LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWTIA-YSAFI-- 90 (323)
T ss_pred eehhhccchh--hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEEEcc-CcceE--
Confidence 3344455555 3333334445568888888888998 57889999999886 568899999999999993 33222
Q ss_pred eccCCCCeEEEEEccC-----CC----EEEEEecCC-eEEEEECCCCcEEEEec---CCCc--ceEEEEecCCCCCcEEE
Q 007768 339 YMGHSKAVRDISFCND-----GT----KFLTASYDK-NIKYWDTETGQVIRTFS---TGKI--PYVVKLNPDDDKQNILL 403 (590)
Q Consensus 339 ~~~h~~~V~~l~fspd-----g~----~l~s~s~Dg-~I~vWd~~t~~~~~~~~---~~~~--~~~~~~~~~~~~~~~lv 403 (590)
.-|+-.++++.|.+. ++ .++.-+... .+.+-|......++... .++. +.+..+........+++
T Consensus 91 -~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 91 -SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred -EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 224445556666542 11 111111100 01222221111122111 1222 23333333334556788
Q ss_pred EEECCCeEEEEeCCCCce----------EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc---EEEEeecC
Q 007768 404 AGMSDKKIVQWDMNTKEI----------TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEP 470 (590)
Q Consensus 404 sg~~dg~I~iwD~~t~~~----------~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~---~~~~~~~~ 470 (590)
+|..+|.+.+||+.++.. ...+..|..+|.++.+.+.-..=++|+.+..+..|+++... .+......
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 999999999999999733 33445689999999999877777888988999999986431 11111122
Q ss_pred CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
....+..+.+-||++.+|+++.|+.|+||+.++...+ ..++-| ...|.+++|+|+..++++++.|++|.+|++
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL---AVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL---AVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCch---hhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 4456888999999999999999999999999886555 455556 467889999999999999999999999986
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.7e-13 Score=146.38 Aligned_cols=235 Identities=12% Similarity=0.107 Sum_probs=162.2
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec---CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.+||. ++...+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++...............|+|++.
T Consensus 179 ~~l~~~d~--dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDY--DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcC--CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC-
Confidence 36888887 34444455567778999999999999987653 3579999999887654433333344567777653
Q ss_pred CcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeecCCCC
Q 007768 399 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
.++++.+.+| .|++||+.+++..+.. .+...+....|+|+|+.|+.++.+ + .|+++|+..+... .+.. ...
T Consensus 256 -~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~ 331 (429)
T PRK03629 256 -KLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGS 331 (429)
T ss_pred -EEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCC
Confidence 4555555555 5999999988765443 344567889999999999877764 3 4555566655433 3322 333
Q ss_pred ceeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCc---EEEEe
Q 007768 474 SMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK---CWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~---I~iwd 547 (590)
......|+|+|++|+..+.+ ..|.+||+.++.... +. .. .......|+|||++|+.++.++. +.+++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt---~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LT---DT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eC---CC---CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 45678999999999887654 358889987654321 11 11 11234789999999998887664 67777
Q ss_pred CCCCeEEEEEecCCCcEEEEEEcC
Q 007768 548 WKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+ +|.....+..|.+.+...+|+|
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCC
Confidence 7 5666677888888899999998
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=2.4e-14 Score=135.37 Aligned_cols=240 Identities=15% Similarity=0.240 Sum_probs=172.5
Q ss_pred CCCCCeeEEEEcCCC----CCEEEEEeCCCcEEEEecCCCCeeE---EE-----eccCCCCeEEEEEcc-CCCEEEEEec
Q 007768 297 GHTKGVSAIRFFPKY----GHLILSAGMDTKVKIWDVVNSGKCM---RT-----YMGHSKAVRDISFCN-DGTKFLTASY 363 (590)
Q Consensus 297 gH~~~V~~l~~sp~~----g~~L~sgs~Dg~I~iWd~~~~~~~~---~~-----~~~h~~~V~~l~fsp-dg~~l~s~s~ 363 (590)
.|.-+++.+.|.|+. ..+|||++ ..++||.+......+ .. -..+..++++..|+. +.++|.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 688899999999984 24666665 479999985222111 11 124677899999998 7889999999
Q ss_pred CCeEEEEECCCCcE----EEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE---EEcCcCCceeEEE
Q 007768 364 DKNIKYWDTETGQV----IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ---EYDQHLGAVNTIT 436 (590)
Q Consensus 364 Dg~I~vWd~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~---~~~~h~~~V~~i~ 436 (590)
|-+..|||++++.. .+.+.+.+.++-++|.. ....+|++.+.||.|++||+|..+... +-.....+...++
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~--~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK--GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEecc--CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 99999999999833 23344556666777766 445799999999999999999865332 2223356788899
Q ss_pred EeCCC-CEEEEEeC-CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccc
Q 007768 437 FVDSN-RRFVTSSD-DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 437 ~~p~~-~~l~s~s~-Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
|++.. +++++-.. ...|.|.|++.+.....-...|...|..|+|.|. ...|++++.|.++.|||+............
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 98754 45555444 4569999999886655555679999999999996 578999999999999999765431111111
Q ss_pred cCcccccceEEEEEcC-CCCEEEEEcCC
Q 007768 514 AGHIVAGYACQVNFSP-DGRFVMSGDGE 540 (590)
Q Consensus 514 ~~~~~~~~v~~v~~sp-dg~~l~sgs~d 540 (590)
-.-...+.|..+.|++ .+.+|+.+...
T Consensus 330 lay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 330 LAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhhccceeeeeeecccCCCEEEEEecC
Confidence 1222356788999996 56677776543
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.8e-14 Score=150.06 Aligned_cols=276 Identities=17% Similarity=0.260 Sum_probs=191.7
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCC---CEEEEEecCCeEEEEECCCCcEEEE
Q 007768 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG---TKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 304 ~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg---~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
.-.|+++ +++++.+. +..|.||.+ .++.++..+.+|..++..+.+.|.. .++++++.+|.|++||...+..+++
T Consensus 21 ~avfSnD-~k~l~~~~-~~~V~VyS~-~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 21 PAVFSND-AKFLFLCT-GNFVKVYST-ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred ccccccC-CcEEEEee-CCEEEEEec-chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 3457787 66666655 468999999 7999999999999999999999844 4678999999999999999999999
Q ss_pred ecCCCcceEEEEecCCCCCc-EEEEEECCCeEEE-EeCCCCce-----EEE--------EcCcCCceeEEEEeCCCCEEE
Q 007768 381 FSTGKIPYVVKLNPDDDKQN-ILLAGMSDKKIVQ-WDMNTKEI-----TQE--------YDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~-~lvsg~~dg~I~i-wD~~t~~~-----~~~--------~~~h~~~V~~i~~~p~~~~l~ 445 (590)
+.....+.++.+.+...... .+..+..+..+.. ........ +.+ +..|.. -.+|.+++.+.+..
T Consensus 98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKG 176 (792)
T ss_pred EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEE
Confidence 98877766655533221111 1222222222111 11111111 111 112222 35677777776555
Q ss_pred EEeCCCcEEEEECCCCcE---EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcccccc
Q 007768 446 TSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~ 521 (590)
..- +..+.+|....... ...+...|...+++.++||++++++++..||+|.+|.--. ...-.....+.-| ...
T Consensus 177 i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH--~~~ 253 (792)
T KOG1963|consen 177 IVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH--HDE 253 (792)
T ss_pred EEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec--ccc
Confidence 554 56688998876441 1122234556689999999999999999999999996433 1111122233333 567
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
|.+++|+++|.+|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++| ++.+.+.+..|..|.+
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHL 318 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence 8899999999999999999999999999998 455666778999999999 5666777777888865
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=8e-14 Score=142.63 Aligned_cols=277 Identities=12% Similarity=0.144 Sum_probs=203.2
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccC--CCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTET 374 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h--~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t 374 (590)
+|...-+.|..+|++..+|++|..--.|++||+. .-. + .+.-| ...|.-.-++.|-..++.-..|++|-+.....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydla-nLS-L-KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLA-NLS-L-KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcc-cce-e-eeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 6777889999999966667888899999999993 222 2 22223 23444455555656666666778877654321
Q ss_pred CcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007768 375 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
....+..+.....++++.... -|++++....|+-+++..|..+..+....+.+++|..++...+|++|+.+|.|.
T Consensus 126 --~hy~~RIP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 126 --RHYRTRIPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred --eeeeeecCcCCccccccCCCc---cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence 222223333344444443332 266666677899999999999999988889999999999999999999999999
Q ss_pred EEECCCCcEEEEeecCC----------CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007768 455 VWEFGIPVVIKYISEPH----------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~----------~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
+||.+....+..+.... ...|+++.|+.+|-.+++|+.+|.|.|||++....+. ...|....+|..
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~----~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL----VKDHGYELPIKK 276 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee----ecccCCccceee
Confidence 99998876665554221 1249999999999999999999999999999876553 344555677888
Q ss_pred EEEcCC--CCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 525 VNFSPD--GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 525 v~~spd--g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
+.|-+. +..|++. ....++|||-.+|+....+.... .+..+|+.| ++.+++++-.++.+..
T Consensus 277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p-~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVP-GSGMFFTANESSKMHT 339 (703)
T ss_pred ecccccCCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeec-CCceEEEecCCCccee
Confidence 999775 4455554 45689999999999998887544 489999999 6778888887776543
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.2e-14 Score=137.66 Aligned_cols=297 Identities=15% Similarity=0.184 Sum_probs=215.5
Q ss_pred HHhhccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEe-cCCCCCeeEEEEcCCCCCEEE
Q 007768 238 KEEKGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW-SGHTKGVSAIRFFPKYGHLIL 316 (590)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l-~gH~~~V~~l~~sp~~g~~L~ 316 (590)
|.-.++-|.+..+.+..-..|+++++.|.-+|+|.....-. .-.|+ +|... ..|...|.||+|... ...|+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~------~k~~K-PI~~~~~~H~SNIF~L~F~~~-N~~~~ 121 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV------RKTPK-PIGVMEHPHRSNIFSLEFDLE-NRFLY 121 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh------hcCCC-CceeccCccccceEEEEEccC-CeeEe
Confidence 34456678888888888899999999999999995432211 11222 23322 346689999999987 88999
Q ss_pred EEeCCCcEEEEecCCCCeeEEEecc--CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc----EEEEecCCCcceEE
Q 007768 317 SAGMDTKVKIWDVVNSGKCMRTYMG--HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVV 390 (590)
Q Consensus 317 sgs~Dg~I~iWd~~~~~~~~~~~~~--h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~----~~~~~~~~~~~~~~ 390 (590)
+|+.+++|.+.|+ .+.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+... ++.....+...+.+
T Consensus 122 SG~~~~~VI~HDi-Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~ 200 (609)
T KOG4227|consen 122 SGERWGTVIKHDI-ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTA 200 (609)
T ss_pred cCCCcceeEeeec-ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceee
Confidence 9999999999999 56666655532 23489999999999999999999999999997654 34444445666777
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCCc-eEEEE------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEY------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV 463 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~-~~~~~------~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~ 463 (590)
.|+|... .+|++.+..+.+-+||.+... .+..+ ......-.++.|+|+|+.|++.-....-.+||+-...+
T Consensus 201 ~F~P~~P--~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 201 EFHPETP--ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eecCCCc--eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 7887654 789999999999999998643 22221 11222346789999999999887777777889877555
Q ss_pred EEEeecCC------CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce--------------------eecccccccCcc
Q 007768 464 IKYISEPH------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--------------------QLNKKKRFAGHI 517 (590)
Q Consensus 464 ~~~~~~~~------~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~--------------------~~~~~~~~~~~~ 517 (590)
........ ...|.+++|..+- .+++|+.+-.|++|.+.... .-..+..++||
T Consensus 279 ~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH- 356 (609)
T KOG4227|consen 279 FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH- 356 (609)
T ss_pred eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc-
Confidence 44333211 1246677777554 48999999999999874311 11123446666
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
...+..+.|+|...+|++.+-...++||.-
T Consensus 357 -RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 357 -RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred -cccccceeecCCcceEeccchhhheecccc
Confidence 466788999999999999999999999963
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=8.8e-13 Score=137.20 Aligned_cols=276 Identities=17% Similarity=0.196 Sum_probs=179.4
Q ss_pred CCEE-EEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEE
Q 007768 312 GHLI-LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 390 (590)
Q Consensus 312 g~~L-~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~ 390 (590)
++++ ++-..++.|.|.|. .+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++..+..+..+
T Consensus 5 ~~l~~V~~~~~~~v~viD~-~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDG-ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEET-TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred ccEEEEEecCCCEEEEEEC-CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 3455 45556899999998 678888888765544455789999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCc-------CCceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCc
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-------LGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPV 462 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h-------~~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~ 462 (590)
.+++++. .++++....+.+.++|.++.+.+..+... ...+..|..+|....++..-. .+.|.+.|+....
T Consensus 84 ~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 84 AVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9998663 44555567999999999999998877532 346778888888886666655 4888888887654
Q ss_pred EEEEeecCCCCceeEEEEcCCCCEEEEE-EcCCeEEEEEcCCceeecccccc---------------------cCcc---
Q 007768 463 VIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRF---------------------AGHI--- 517 (590)
Q Consensus 463 ~~~~~~~~~~~~i~~i~~sp~g~~la~~-s~dg~I~iwd~~~~~~~~~~~~~---------------------~~~~--- 517 (590)
.+...............|+|++++++++ ...+.|.++|..++........- ..+.
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 4432222344566788999999988775 44577888887765433211100 0000
Q ss_pred -------------------------cccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCeEEEEEecCC-CcEEEE
Q 007768 518 -------------------------VAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHE-GVCIGC 567 (590)
Q Consensus 518 -------------------------~~~~v~~v~~spdg~~l~sg----s~dg~I~iwd~~t~~~~~~l~~h~-~~V~~v 567 (590)
..+.-.-+..+|++++|++. ...+.|.++|.++.+.+.++.... ..+..+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 00111236779999999988 456899999999998888776332 358899
Q ss_pred EEcCCCCCEEEEEeCCC-cEEEcC
Q 007768 568 EWHPLEQSKVATCGWDG-LIKYWD 590 (590)
Q Consensus 568 ~~sp~~~~~l~s~g~Dg-~I~iWD 590 (590)
.|++++....+|.-..+ .|.|||
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEE
T ss_pred EECCCCCEEEEEEecCCCEEEEEE
Confidence 99995554455544444 698886
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=1.6e-12 Score=127.21 Aligned_cols=251 Identities=14% Similarity=0.241 Sum_probs=178.8
Q ss_pred eeEEEEcCCCCCEEEEEeCC--CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE
Q 007768 302 VSAIRFFPKYGHLILSAGMD--TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~D--g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
|.-+-|+. .++|..+.+ ..+++.++ ..+..+..+. ....|.+|.++.+ +|+++-.+ .|.|||+.+.+.+.
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~-Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHF-KKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEc-ccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeeh
Confidence 45555653 466655554 34888888 4444454443 4567999999754 66666554 49999999999999
Q ss_pred EecCC--CcceEEEEecCCCCCcEEEEEE-CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc-EEE
Q 007768 380 TFSTG--KIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS-LRV 455 (590)
Q Consensus 380 ~~~~~--~~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~-I~i 455 (590)
++... +....++++++..+..+.+-++ ..|.|++||+.+-+.+..+..|.+++.+++|+++|.+|+++|+.|+ |||
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 98765 4445778888765433333333 3589999999999999999999999999999999999999999997 799
Q ss_pred EECCCCcEEEEeecCC-CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc-----ccc--------cC----c-
Q 007768 456 WEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK-----KRF--------AG----H- 516 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~-~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~-----~~~--------~~----~- 516 (590)
|.+..+..+..+..+. ...|.+++|+|++.+|++.+..++|.+|.+......... ..+ .. .
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V 280 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQV 280 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhh
Confidence 9999999888886543 345889999999999999999999999988643211000 000 00 0
Q ss_pred --------------cc-cc--ceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--CeEEEEEecC
Q 007768 517 --------------IV-AG--YACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKVFRTLKCH 560 (590)
Q Consensus 517 --------------~~-~~--~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--~~~~~~l~~h 560 (590)
.. .+ .++.+.-.+....+..++.||.++.|.+.. |.....++.|
T Consensus 281 ~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 281 SSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred hhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 00 01 122222234678899999999999998753 4444555544
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=4.5e-15 Score=148.25 Aligned_cols=264 Identities=16% Similarity=0.209 Sum_probs=203.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
.-+-..+.++.+ |..|+.|+.-|.|..+|. .++++...+. -...|.++.|-.+.++||++- ...+.|||- .|..+
T Consensus 129 eFGPY~~~ytrn-GrhlllgGrKGHlAa~Dw-~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRN-GRHLLLGGRKGHLAAFDW-VTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTEL 203 (545)
T ss_pred ccCCeeeeecCC-ccEEEecCCccceeeeec-ccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEE
Confidence 345677889888 899999999999999999 5666666654 456799999998888887775 589999995 46677
Q ss_pred EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007768 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
..+.......-+.|.|.. .+|++++..|.+..-|+.+|+++..+..-.+.+..++-+|-+-.+-+|...|+|.+|..
T Consensus 204 HClk~~~~v~rLeFLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred eehhhcCchhhhcccchh---heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 777776677777787765 57888899999999999999999999888999999999999999999999999999999
Q ss_pred CCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 459 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
....++..+. .|.++|.+|++.++|.|+++.+.|..++|||++....+..... ......++||..| +|+.+
T Consensus 281 ~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t------p~~a~~ls~Sqkg-lLA~~- 351 (545)
T KOG1272|consen 281 NSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT------PHPASNLSLSQKG-LLALS- 351 (545)
T ss_pred CCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec------CCCcccccccccc-ceeee-
Confidence 8888777665 4999999999999999999999999999999998665443332 1223457887766 34433
Q ss_pred CCCcEEEEe-CCC--CeEEEEEecC--CCcEEEEEEcCCCCCEEEEE
Q 007768 539 GEGKCWFWD-WKS--CKVFRTLKCH--EGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 539 ~dg~I~iwd-~~t--~~~~~~l~~h--~~~V~~v~~sp~~~~~l~s~ 580 (590)
....|.||. .-. +.....+-.| .++|.++.|.|. ...|-.|
T Consensus 352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~-EDvLGIG 397 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY-EDVLGIG 397 (545)
T ss_pred cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH-HHeeecc
Confidence 445799994 222 1222222223 348999999994 3344433
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=9.1e-15 Score=150.51 Aligned_cols=232 Identities=17% Similarity=0.221 Sum_probs=165.7
Q ss_pred EeCCCcEEEEecCCCCeeEEEec---cCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCcEE-------EEec-CCC
Q 007768 318 AGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVI-------RTFS-TGK 385 (590)
Q Consensus 318 gs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~-------~~~~-~~~ 385 (590)
++.-|.|-||++...+++-.... .....|+++.|.| |...|++++.||.|++|.+..+..- ..+. +..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 35578999999977665433221 2456799999999 8889999999999999998765322 2222 345
Q ss_pred cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE-
Q 007768 386 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI- 464 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~- 464 (590)
.++.+.|+|... ++|++++.|.+|.+||++++.....+.+|.+.|..++|+|+|+++++.+.||+|++|.-+.....
T Consensus 679 KI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 679 KITSLRFHPLAA--DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred eEEEEEecchhh--hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 567788887654 78999999999999999999999999999999999999999999999999999999998775433
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEcC
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDG 539 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~ 539 (590)
..-..+....--.|.|.-+|+++++.+.| .+|.+|+...-.. ..+....-. ....+.--.+.+|.. ++++|-.
T Consensus 757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lD-vaps~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 757 YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLD-VAPSPLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-Ccceeeeec-ccCccccccccCCCceEEEecCC
Confidence 22222333445568888899999988776 4688888754221 001100000 001111123444544 4678888
Q ss_pred CCcEEEEeCCCCeE
Q 007768 540 EGKCWFWDWKSCKV 553 (590)
Q Consensus 540 dg~I~iwd~~t~~~ 553 (590)
|..|++|.+-...+
T Consensus 835 D~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 835 DRFVNMYEVIYESP 848 (1012)
T ss_pred CceEEEEEecCCCc
Confidence 99999999865443
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=2.8e-12 Score=123.25 Aligned_cols=270 Identities=13% Similarity=0.170 Sum_probs=180.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC--CeEEEEEccCCCEEE-EEecC------CeEEEEEC
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK--AVRDISFCNDGTKFL-TASYD------KNIKYWDT 372 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~--~V~~l~fspdg~~l~-s~s~D------g~I~vWd~ 372 (590)
..+++|+.+ ...+++|..+| .+||++. .-+.......+.. .+.-+-| ..++|+ +|+.+ ..|.|||=
T Consensus 8 ~lsvs~NQD-~ScFava~~~G-friyn~~-P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 8 TLSVSFNQD-HSCFAVATDTG-FRIYNCD-PFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred eeEEEEccC-CceEEEEecCc-eEEEecC-chhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 445899988 66666666555 8999983 3222111111222 2223333 334554 34333 47999998
Q ss_pred CCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC-CCceEEEEcCcC--CceeEEEEeCCCCEEEE-Ee
Q 007768 373 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHL--GAVNTITFVDSNRRFVT-SS 448 (590)
Q Consensus 373 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-t~~~~~~~~~h~--~~V~~i~~~p~~~~l~s-~s 448 (590)
...+++..+.....+..+.+..+ .+++ -..++|++|... ..+.+..+.... ..+.+++-..+...|+. |-
T Consensus 83 ~k~~~i~el~f~~~I~~V~l~r~-----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELSFNSEIKAVKLRRD-----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEEeccceeeEEEcCC-----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 88889999988888888888764 2333 346899999987 445555554332 22333333333334443 34
Q ss_pred CCCcEEEEECCCCcE-EEEeecCCCCceeEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeecccccccCcccccceEEEE
Q 007768 449 DDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
.-|.|.|-|+..... ...+...|...|.|++++-+|..+|++|..|+ |+|||..++..+..+.+-.. ...+.+++
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---~A~iy~ia 233 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD---RADIYCIA 233 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---hheEEEEE
Confidence 568999999976554 22334579999999999999999999999998 89999999988766554333 36788999
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCe---E---------------------EEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 527 FSPDGRFVMSGDGEGKCWFWDWKSCK---V---------------------FRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~---~---------------------~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
|||++.+|+++|..|+|+||.++... . +..+....+...-++|-. +.+.++..+.
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~-~~nsvi~i~~ 312 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGS-ETNTVIAICA 312 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecC-CCCeEEEEEe
Confidence 99999999999999999999875421 1 112233345566677876 4456777777
Q ss_pred CCcE
Q 007768 583 DGLI 586 (590)
Q Consensus 583 Dg~I 586 (590)
||.-
T Consensus 313 Dgsy 316 (346)
T KOG2111|consen 313 DGSY 316 (346)
T ss_pred CCcE
Confidence 8864
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=146.40 Aligned_cols=218 Identities=22% Similarity=0.382 Sum_probs=163.7
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc--eEEEEecCCCCCcEEEEEECCCeEEEE
Q 007768 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~iw 414 (590)
..+.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+.+..+..++.. .++.|.|... ..++++|..|..|++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC-CeEEEeccCcceEEEE
Confidence 457899999999999999999999999999999999999999999888765 5677777654 4789999999999999
Q ss_pred eCCC----------CceEEEEcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEee---------cCCCCc
Q 007768 415 DMNT----------KEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHMHS 474 (590)
Q Consensus 415 D~~t----------~~~~~~~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~---------~~~~~~ 474 (590)
|+.. .+....+..|...|..|+..|++ ..|.+++.||+|+-+|++.+.....-. .+..-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9984 23445566788999999999988 789999999999999998753321111 012234
Q ss_pred eeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeec--------c-------c-ccccCcc-c-----cc---ceEEEEEc
Q 007768 475 MPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLN--------K-------K-KRFAGHI-V-----AG---YACQVNFS 528 (590)
Q Consensus 475 i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~--------~-------~-~~~~~~~-~-----~~---~v~~v~~s 528 (590)
..++.++|. ..+|++|+.|-..++||.+...... . . .-..+|. . .. .++-++|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678899996 4689999999999999953211000 0 0 0011221 0 11 14568899
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeEEE
Q 007768 529 PDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
|+|.-|++.-..-.|+++|+..++...
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 999887777666789999998766543
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.1e-13 Score=143.94 Aligned_cols=235 Identities=17% Similarity=0.202 Sum_probs=161.8
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCcEEEEecCCCcceEEEEecCCCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.+||. .+...+.+..+...+.+.+|+|||+.|+.++.. ..|.+||+.+++...............|++++.
T Consensus 184 ~~l~i~D~--~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADS--DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECC--CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC-
Confidence 35888987 445555666778889999999999999988753 469999999887654433333334566777543
Q ss_pred CcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CCc--EEEEECCCCcEEEEeecCCCC
Q 007768 399 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKS--LRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg~--I~iwdl~~~~~~~~~~~~~~~ 473 (590)
.++++.+.+| .|++||+.+++.. .+..+.......+|+|+++.|+.++. +|. |+++++..+.... +.. ...
T Consensus 261 -~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~-~g~ 336 (433)
T PRK04922 261 -RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF-QGN 336 (433)
T ss_pred -EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec-CCC
Confidence 4556666555 5999999988754 34455555678899999999887764 444 7777776655332 222 223
Q ss_pred ceeEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC---CCcEEEEe
Q 007768 474 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd 547 (590)
....++|+|+|++|+..+.++ .|.+|++.++... .+. .+. ......|+|||++|+..+. .+.|++++
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~----~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGS----LDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCC----CCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 345789999999998876543 6999998765433 111 111 2234789999999877664 34688888
Q ss_pred CCCCeEEEEEecCCCcEEEEEEcC
Q 007768 548 WKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+. +.....+..+.+.+...+|+|
T Consensus 410 ~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCceEEcccCCCCCCCCccCC
Confidence 74 455666666677788889987
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=1.3e-13 Score=140.20 Aligned_cols=217 Identities=16% Similarity=0.256 Sum_probs=151.8
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCCCcEE-----EEecCCCcceEEEEec--CCCCCcEEEEEECCCeEEEEeCCCC
Q 007768 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVI-----RTFSTGKIPYVVKLNP--DDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 347 ~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~lvsg~~dg~I~iwD~~t~ 419 (590)
....++-.|.+|+-.- ...+.+|+.+.+..+ +.+-.+..+.|..|+. ...++.-+++|-.-|.|.+.|....
T Consensus 127 ~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 127 TNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3333444555554332 246777777643221 2222344455555532 3334456889999999999998764
Q ss_pred ceEEEEc----CcCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCC--------------c--------------EEEE
Q 007768 420 EITQEYD----QHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIP--------------V--------------VIKY 466 (590)
Q Consensus 420 ~~~~~~~----~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~--------------~--------------~~~~ 466 (590)
+....+. .....|+||.|.|.+. .|+.+-.+|.+++||.... . ++..
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~ 285 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR 285 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce
Confidence 3322221 1346899999998654 6777788999999975311 0 0111
Q ss_pred eecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007768 467 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 467 ~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
+. .....|..++|+|+|++||+.+.||.++||+..+...+...+.+- +...|++|||||+||++|+.|--|.||
T Consensus 286 w~-~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----GGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 286 WH-IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----GGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred eE-eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-----cceEEEEEcCCccEEEecCCcceEEEE
Confidence 11 123468889999999999999999999999998765554444433 446689999999999999999999999
Q ss_pred eCCCCeEEEEEecCCCcEEEEEEc
Q 007768 547 DWKSCKVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 547 d~~t~~~~~~l~~h~~~V~~v~~s 570 (590)
.+..++.+..-++|..-|..|+|.
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EeccceEEEeccccccceeeEeec
Confidence 999999999999999999999998
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.7e-13 Score=142.42 Aligned_cols=235 Identities=15% Similarity=0.178 Sum_probs=158.2
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCcEEEEecCCCcceEEEEecCCCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.+||. ++...+.+..+...+.+.+|+|||+.|+..+.. ..|.+||+.+++...............|+|++.
T Consensus 176 ~~L~~~D~--dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDA--DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECC--CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC-
Confidence 35666665 555556666788899999999999999887753 459999999987655433333445667777653
Q ss_pred CcEEEEEECCCeEEEE--eCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CCcEEEEEC--CCCcEEEEeecCCCC
Q 007768 399 QNILLAGMSDKKIVQW--DMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEF--GIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg~I~iw--D~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl--~~~~~~~~~~~~~~~ 473 (590)
.++++.+.++...+| |+.++. ...+..+.+.+....|+|+|+.|+.++. ++...||.+ ..+.. ..+.. ...
T Consensus 253 -~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~-~g~ 328 (427)
T PRK02889 253 -TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF-TGS 328 (427)
T ss_pred -EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec-CCC
Confidence 455566777765555 555554 4445555566678899999998887664 456666654 44332 22221 223
Q ss_pred ceeEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC---cEEEEe
Q 007768 474 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd 547 (590)
......|+|+|++|+..+.++ .|.+||+.++.... +. .+ .....+.|+|||++|+..+.++ .+++.+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt--~~----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT--DT----TRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc--CC----CCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 344678999999998877654 69999987754321 11 11 1224579999999988776543 366667
Q ss_pred CCCCeEEEEEecCCCcEEEEEEcC
Q 007768 548 WKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+ ++.....+..+.+.+...+|+|
T Consensus 402 ~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 402 S-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred C-CCCceEEeecCCCCCCCCccCC
Confidence 6 5666777777778888899988
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=2.7e-13 Score=149.40 Aligned_cols=254 Identities=18% Similarity=0.273 Sum_probs=177.3
Q ss_pred EecCCCCeeEEEeccCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCC-------cEEEEec-CCCcceEEEEecCCC
Q 007768 327 WDVVNSGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG-------QVIRTFS-TGKIPYVVKLNPDDD 397 (590)
Q Consensus 327 Wd~~~~~~~~~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~-------~~~~~~~-~~~~~~~~~~~~~~~ 397 (590)
|+. .|..+..+..|...|..++.++. +.+|+|||.||+|++|++... +...++. .+....++.+.+.+
T Consensus 1034 W~p--~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~- 1110 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG- 1110 (1431)
T ss_pred CCc--cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-
Confidence 776 78899999999999999999885 499999999999999998532 3334444 55666777777655
Q ss_pred CCcEEEEEECCCeEEEEeCCCC--c-----eEEEEcCc-CCceeEE-EEeC-CC-CEEEEEeCCCcEEEEECCCCcEEEE
Q 007768 398 KQNILLAGMSDKKIVQWDMNTK--E-----ITQEYDQH-LGAVNTI-TFVD-SN-RRFVTSSDDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~--~-----~~~~~~~h-~~~V~~i-~~~p-~~-~~l~s~s~Dg~I~iwdl~~~~~~~~ 466 (590)
+.+++++.||.|++.++... . .....+.+ .+.+.++ +|.. .. ..++.+..-+.|..||++.......
T Consensus 1111 --~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1111 --DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred --CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 56999999999999998752 1 11111222 2333333 3322 22 3678888889999999987665544
Q ss_pred ee-cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC---CCCEEEEEc--CC
Q 007768 467 IS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGD--GE 540 (590)
Q Consensus 467 ~~-~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs--~d 540 (590)
+. .+..+.|++++.+|.+.+++.|+..|.+.+||++-+..+.... +.. ...+..+..+| ....+++++ ..
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~---~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPA---RAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc-Ccc---cCCcceEEeeccCCCCceEEEecccCC
Confidence 43 2455679999999999999999999999999998665443322 122 24455555554 334555544 57
Q ss_pred CcEEEEeCCCCeEEEEEecCCC-------------------cEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 541 GKCWFWDWKSCKVFRTLKCHEG-------------------VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 541 g~I~iwd~~t~~~~~~l~~h~~-------------------~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+.|.+|++.+|.+...+....+ ....+.+.. .+.++++||.|+.|+.||
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeecc
Confidence 7899999999877666654311 112233333 566899999999999998
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3.3e-13 Score=132.68 Aligned_cols=263 Identities=14% Similarity=0.168 Sum_probs=189.4
Q ss_pred CCCeeEEEEcCCCC-CEEEEEeCCCcEEEEecCCCCeeEE------EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 299 TKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVVNSGKCMR------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 299 ~~~V~~l~~sp~~g-~~L~sgs~Dg~I~iWd~~~~~~~~~------~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
...|+.++|.-++. ..|..++.+..+..+.+ ....+.. +......+|..+... ...|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~-~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVI-EEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccc-cCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 44577788876533 34444446777777776 3333332 334456677777765 23788888899999999
Q ss_pred CCCCc----EEEEecCCCcceEEEEecCCCCCcEEEEEECC--CeEEEEeCCCCceEEEEcCc---------CCceeEEE
Q 007768 372 TETGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQH---------LGAVNTIT 436 (590)
Q Consensus 372 ~~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~t~~~~~~~~~h---------~~~V~~i~ 436 (590)
...+. .+..+..+.....+.-.+ ....++++|+.. ..+.+||+...+.+..-+.- .-.++++.
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCC--CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 98543 334444454444444444 344788889998 89999999988655543221 23468899
Q ss_pred EeCC--CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007768 437 FVDS--NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 437 ~~p~--~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
|.+. ...|++++.-+.|++||.+.+........-...+|.++...|++++++++..-+.+..||++.+..... .+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--GLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc--ccC
Confidence 9988 889999999999999999876443333334678999999999999999999999999999998765533 233
Q ss_pred CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcC
Q 007768 515 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+. .+.+.++..+|.+++|++++-|..|+|+|+++.+++...-. ...++++.+.+
T Consensus 288 g~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 288 GI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred Cc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 43 56788899999999999999999999999999877765542 22356666654
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.3e-12 Score=138.32 Aligned_cols=234 Identities=17% Similarity=0.167 Sum_probs=160.8
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec---CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.+||. .+...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++...............|+|++.
T Consensus 182 ~~l~~~d~--dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQ--DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECC--CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC-
Confidence 36778886 55566667788889999999999999988764 4689999999887654433333444566777553
Q ss_pred CcEEEEEECCCe--EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCC
Q 007768 399 QNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg~--I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
.++++.+.++. |++||+.++... .+..+........|+|+++.|+.++. +| .|++||+...... .+.. ...
T Consensus 259 -~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-~~~ 334 (435)
T PRK05137 259 -KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-GGG 334 (435)
T ss_pred -EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-CCC
Confidence 55566666554 888899887654 45556666788999999999887774 33 6888888765443 3332 234
Q ss_pred ceeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC------CcEE
Q 007768 474 SMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE------GKCW 544 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d------g~I~ 544 (590)
.+....|+|+|++|+..+.+ ..|.+|++...... .+. .+ ..+..+.|+|||++|+..+.+ ..|+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt--~~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT--SG----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc--CC----CCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 56678899999999887654 36888887554321 111 11 123458999999998765432 3688
Q ss_pred EEeCCCCeEEEEEecCCCcEEEEEEcC
Q 007768 545 FWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 545 iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
++|+..+.. ..+. ..+.+...+|+|
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCC
Confidence 888876654 3444 344577788887
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=1.3e-13 Score=132.40 Aligned_cols=273 Identities=15% Similarity=0.250 Sum_probs=183.7
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEE-EEEecCCeEEEEECCCCcEE
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~t~~~~ 378 (590)
..|.-|.|..+....|.....++.|.+|++ ...+-...+.....++..++|+|+|+.| .+...+-.|.||.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl-~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSL-VQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEe-ecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 457788899886677777888999999999 5666677777788899999999999655 56677999999999998887
Q ss_pred EEecCCCcceEEEEecCCCCCcEEEEEECCC---eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007768 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg---~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..-...+....++|++++. +.+..+.-. .+.+.....-.++..+....-..+.|.|+|+|+.|++
T Consensus 128 ~~~~pK~~~kg~~f~~dg~---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV--------- 195 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQ---FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV--------- 195 (447)
T ss_pred EecccccCceeEEECCCCc---eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------
Confidence 7665566667788888653 344333321 1222222223445555555667789999999977664
Q ss_pred EECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc-------------------------
Q 007768 456 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK------------------------- 510 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~------------------------- 510 (590)
||---.-.+.. -...-.+..+.|+|.+++|++|+.|+.+++.+--+-......
T Consensus 196 wd~~Leykv~a--Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 196 WDNVLEYKVYA--YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred ecchhhheeee--eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 54221111111 123346788999999999999999998887542211100000
Q ss_pred --------------------------------cccc---C-cccccceEEEEEcCCCCEEEEEcC--CCcEEEEeCCCCe
Q 007768 511 --------------------------------KRFA---G-HIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWKSCK 552 (590)
Q Consensus 511 --------------------------------~~~~---~-~~~~~~v~~v~~spdg~~l~sgs~--dg~I~iwd~~t~~ 552 (590)
..++ . ......+.-++||+|..|+++-.+ -..+.+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 0000 0 000122445899999999998764 3679999999887
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 553 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 553 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+...+. ...+|....|+| +...|+.|.....+++|
T Consensus 354 l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 354 LHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFW 388 (447)
T ss_pred hhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEE
Confidence 766554 455799999999 45556666556678887
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=4.4e-12 Score=121.86 Aligned_cols=178 Identities=16% Similarity=0.314 Sum_probs=140.5
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC-CCcEEEEecCCC-cceEEEEecCCCCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFSTGK-IPYVVKLNPDDDKQ 399 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~-t~~~~~~~~~~~-~~~~~~~~~~~~~~ 399 (590)
..|.|||= ...+++.++. ...+|.+|.+.++ +|++.- .+.|.||... .-+.++.+.... +...+++.+.....
T Consensus 75 NkviIWDD-~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDD-LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEec-ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 57999995 5666776664 5678999999865 566554 5899999987 556666665544 33355566655543
Q ss_pred cEEEEEECCCeEEEEeCCCCce--EEEEcCcCCceeEEEEeCCCCEEEEEeCCCc-EEEEECCCCcEEEEeecCC-CCce
Q 007768 400 NILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDSNRRFVTSSDDKS-LRVWEFGIPVVIKYISEPH-MHSM 475 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~--~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~-I~iwdl~~~~~~~~~~~~~-~~~i 475 (590)
-+..-|-.-|.|.+-|+...+. ...+.+|.+.|.|++++.+|..++++|..|+ |||||..++..+..+..+. ...|
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 3334466679999999987655 4778899999999999999999999999997 7999999999998887653 3469
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007768 476 PSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 476 ~~i~~sp~g~~la~~s~dg~I~iwd~~~~ 504 (590)
.+|+|+|+..+|+++|..|+|.||.++..
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998763
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=5.1e-12 Score=123.15 Aligned_cols=280 Identities=14% Similarity=0.149 Sum_probs=173.7
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc-CCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCC---
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG--- 375 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~--- 375 (590)
.+..++|++. -..++++..|-.|++|+-. . .+...++. ....|+|++|-|. +..|+.|+. +.|.+|.....
T Consensus 100 dlr~~aWhqH-~~~fava~nddvVriy~ks-s-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 100 DLRGVAWHQH-IIAFAVATNDDVVRIYDKS-S-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred ceeeEeechh-hhhhhhhccCcEEEEeccC-C-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 3677889886 6678899999999999973 3 44444433 4567999999994 456666665 67999976432
Q ss_pred -cE--------EEEecC--CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007768 376 -QV--------IRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 376 -~~--------~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
.. ...++. +..+..+.+.++ ...++-+.-.+..|.|||..++..+.....-.+.++-+.|+|++.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~d--gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNED--GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCC--CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 112222 223345555554 33444444567899999999998776665667889999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc--------------
Q 007768 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK-------------- 510 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~-------------- 510 (590)
+++.-|+..++|............. ..+.|...+|+|.|.+|+..+. +.-++|.+.-.......
T Consensus 254 faAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 9999999999996544332222222 3448999999999998766553 33344443211100000
Q ss_pred ----ccccC-cccccceEEEEEcCCCCEEEEEcCCC--------cEEEEeCCCCeEEEEEe----cCCCcEEEEEEcC--
Q 007768 511 ----KRFAG-HIVAGYACQVNFSPDGRFVMSGDGEG--------KCWFWDWKSCKVFRTLK----CHEGVCIGCEWHP-- 571 (590)
Q Consensus 511 ----~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg--------~I~iwd~~t~~~~~~l~----~h~~~V~~v~~sp-- 571 (590)
....+ ....+.+.+++|.|.|.+|++.-..+ .|.+||.+..-.+.... +... -.-+.|+|
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~-P~~IsF~pl~ 410 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY-PAYISFGPLK 410 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC-CceEEeeecc
Confidence 00111 11245567899999999999875433 46778876544433221 1111 23344444
Q ss_pred CCCCEEEEEeCCCcEEEc
Q 007768 572 LEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 572 ~~~~~l~s~g~Dg~I~iW 589 (590)
.++.+|..|=.-|.|.-|
T Consensus 411 n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 411 NEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred cCCcEEEEEeccCceEee
Confidence 234445444455665543
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=3.7e-14 Score=141.82 Aligned_cols=228 Identities=13% Similarity=0.192 Sum_probs=188.3
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE
Q 007768 346 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 346 V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~ 425 (590)
-..+.++.+|++|+.|+.-|.|..+|+.+++....+.....+..+.|..... +++......++|||-. |..+..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq----~~AVAQK~y~yvYD~~-GtElHCl 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ----FFAVAQKKYVYVYDNN-GTELHCL 206 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchH----HHHhhhhceEEEecCC-CcEEeeh
Confidence 4678899999999999999999999999999999998888887777766542 6666678899999964 5556666
Q ss_pred cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007768 426 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 426 ~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~ 505 (590)
..| ..|..+.|.|..-+|++++..|.++.-|+.+++.+..+.. ..+.+..++-+|-...+-+|...|+|.+|+.....
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 544 5789999999999999999999999999999998877754 56778889999999999999999999999998876
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCc
Q 007768 506 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 506 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
.+..+.. | .+.|.+|++.++|+|+++.+.|..|+|||++....+.++.. ..+...+++|. .+ ++++|....
T Consensus 285 PLvKiLc---H--~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq-kg--lLA~~~G~~ 355 (545)
T KOG1272|consen 285 PLVKILC---H--RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ-KG--LLALSYGDH 355 (545)
T ss_pred hHHHHHh---c--CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc-cc--ceeeecCCe
Confidence 6644333 3 46688899999999999999999999999999887777765 34567788875 33 556666668
Q ss_pred EEEc
Q 007768 586 IKYW 589 (590)
Q Consensus 586 I~iW 589 (590)
|.||
T Consensus 356 v~iw 359 (545)
T KOG1272|consen 356 VQIW 359 (545)
T ss_pred eeee
Confidence 8888
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=3.1e-12 Score=124.62 Aligned_cols=242 Identities=20% Similarity=0.325 Sum_probs=160.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE-------------EeccCCCCeEEEEEccCCCEEEEEec-C
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-------------TYMGHSKAVRDISFCNDGTKFLTASY-D 364 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-------------~~~~h~~~V~~l~fspdg~~l~s~s~-D 364 (590)
...|+|++|-|.++.-|+.|+..| |.||........-+ ...+| ..|+++.|++||..+++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 467999999999888899888765 89998743332211 22345 67999999999999999987 5
Q ss_pred CeEEEEECCCCcEEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007768 365 KNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
..|.|||..++..+.... .......+.|+|++ .+|+++.-|+..++|............--.+.|...+|+|.|++
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg---d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG---DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCC---CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 789999999998877663 34445578899877 57999999999999965543222222233458999999999998
Q ss_pred EEEEeCCCcEEEEECCCC---------c---EEEEee-----------cCCCCceeEEEEcCCCCEEEEEEcCC------
Q 007768 444 FVTSSDDKSLRVWEFGIP---------V---VIKYIS-----------EPHMHSMPSISLHPNTNWLAAQSLDN------ 494 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~---------~---~~~~~~-----------~~~~~~i~~i~~sp~g~~la~~s~dg------ 494 (590)
|+.++. |.-++|.+... . .+..+. ....+.+.+++|.|.|.+|++.-..+
T Consensus 295 LLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 295 LLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 766553 33344544211 0 011110 01245688999999999999976543
Q ss_pred --eEEEEEcCCceeecccccccCcccccceEEEEEcC---CCCEEEEEcCCCcEEEEeC
Q 007768 495 --QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 495 --~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs~dg~I~iwd~ 548 (590)
.|.+||.+..-... ..+.+.+...+...++|+| +|.+|..+=+.|.+.-|++
T Consensus 374 k~~i~~fdtr~sp~ve--ls~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 374 KLHISRFDTRKSPPVE--LSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhcccccCceE--EEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 36667765432221 1122222223333466766 5666666666666666654
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.52 E-value=6.2e-13 Score=135.03 Aligned_cols=262 Identities=13% Similarity=0.144 Sum_probs=176.0
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEE-EEEc-------cCCCEEEEEecCCeEE
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRD-ISFC-------NDGTKFLTASYDKNIK 368 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~-l~fs-------pdg~~l~s~s~Dg~I~ 368 (590)
-|...|.|+.|+.. ...+.+++.+..+.-|++..+...+..+ ....|.. +-.- .....|+.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s~~~~~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDSVEVAKL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeeccccc-ceEEEeccCceEEEeecccchhhhhhhC--CcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 56777889999987 5566655555555555553322221111 1111111 1010 1335788999999999
Q ss_pred EEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007768 369 YWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 369 vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
+.+- .++..+.+.. .....+-.|++++. -|++.+.||.|++|. ++|-+..++-....+|.|++|.|+.+.++.+
T Consensus 89 il~k-~~rVE~sv~AH~~A~~~gRW~~dGt---gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 89 ILNK-SARVERSISAHAAAISSGRWSPDGA---GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred Eecc-cchhhhhhhhhhhhhhhcccCCCCc---eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 8874 3444444433 23445667777664 599999999999998 4555555555677899999999998776665
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007768 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
- .+.+.|=.+.....+.... .|.+-|.++.|++..+++++|+.|-..+|||...... |......-+|++++|
T Consensus 164 ~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L------f~S~~~ey~ITSva~ 235 (737)
T KOG1524|consen 164 Q-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL------FTSAAEEYAITSVAF 235 (737)
T ss_pred c-CCeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccCccc------ccCChhccceeeeee
Confidence 4 3567776776665555554 5999999999999999999999999999999865321 233333677999999
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
.|+ ..++.|+.+ .++ .-+...+.|..++|++ ++..++.|...|.+.+
T Consensus 236 npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 236 NPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSA-DGTQATCGTSTGQLIV 282 (737)
T ss_pred ccc-cceeeeeee-eee-----------ecCCCccceEEEEEcC-CCceeeccccCceEEE
Confidence 999 566665533 233 1123467899999999 6668888888887643
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=3.7e-11 Score=125.06 Aligned_cols=264 Identities=16% Similarity=0.197 Sum_probs=168.2
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEe-cCCe
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN 366 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~ 366 (590)
..+.+.++......-..+.|+|+ ++++++++.||.|.++|+ .+.+.+.++.... ...++++++||+++++++ ..+.
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~-~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDL-ATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEET-TSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTE
T ss_pred CCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEEC-CcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCc
Confidence 34677888765554455779999 899999999999999999 6778888886544 468899999999999776 5799
Q ss_pred EEEEECCCCcEEEEecCCCc------ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE-EEcCcCCceeEEEEeC
Q 007768 367 IKYWDTETGQVIRTFSTGKI------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVD 439 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~------~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~-~~~~h~~~V~~i~~~p 439 (590)
+.++|.++.+.++.+..... .....+...+.+..++++--..+.|.+.|......+. .............|.|
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 99999999999998865432 2233333333332344555556999999987754332 2223345677899999
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCcEEEEeecC------------------------------------------------
Q 007768 440 SNRRFVTS-SDDKSLRVWEFGIPVVIKYISEP------------------------------------------------ 470 (590)
Q Consensus 440 ~~~~l~s~-s~Dg~I~iwdl~~~~~~~~~~~~------------------------------------------------ 470 (590)
++++|+.+ ..+..|-++|..+...+..+...
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 99988765 44567777887665444332100
Q ss_pred -----CCCceeEEEEcCCCCEEEEE----EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC--
Q 007768 471 -----HMHSMPSISLHPNTNWLAAQ----SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-- 539 (590)
Q Consensus 471 -----~~~~i~~i~~sp~g~~la~~----s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-- 539 (590)
..+.-..+..||+++++++. ...+.|.++|..+......+....+ ..+..+.|+++|+++..+..
T Consensus 262 v~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~----~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 262 VKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG----KRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp EEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EEEEEE-TTSSEEEEEEE--
T ss_pred EEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC----CcEeccEECCCCCEEEEEEecC
Confidence 00111356778999999998 3348899999988755544332222 22667999999998766554
Q ss_pred CCcEEEEeCCCCeEEEEEe
Q 007768 540 EGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~ 558 (590)
+|.|.+||..+.+.+..+.
T Consensus 338 ~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 338 NGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCcEEEEEEE
Confidence 4479999999999999887
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.2e-12 Score=139.98 Aligned_cols=219 Identities=15% Similarity=0.163 Sum_probs=144.2
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCe--eEEEeccCCCCeEEEEEccCCCEEEEEe-cCCe
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~D---g~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~ 366 (590)
+.+..|...|.+.+|+|+ |+.|+.++.+ ..|++||+ ..+. .+..+.+| ...++|+|||+.|+.++ .+|.
T Consensus 197 ~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl-~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDL-RSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred eEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeC-CCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 456788889999999999 7877776643 36999999 4443 33334443 44689999999888765 5776
Q ss_pred EEEE--ECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCE
Q 007768 367 IKYW--DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 367 I~vW--d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
+.|| |+.++................|++++. .+++++..++...+|++... .....+ .+.+ .++.|+|++++
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~--~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQ--SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT 346 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE
Confidence 5554 776666544333333445567777543 45556556787888876432 222223 3433 45789999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC--CceeecccccccCcccccc
Q 007768 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR--ERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~ 521 (590)
|+.++.++ +.+||+.++...... .. .....+.|+|+|++|+.++.++.+.+|.+. ++... ..+.++ .+.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt-~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~---~~l~~~--~g~ 417 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLS-ST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK---ARLPGS--DGQ 417 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEec-CC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce---EEccCC--CCC
Confidence 98888765 666999877654322 22 234567899999999999999988887753 23222 223333 344
Q ss_pred eEEEEEcCC
Q 007768 522 ACQVNFSPD 530 (590)
Q Consensus 522 v~~v~~spd 530 (590)
+..++|||-
T Consensus 418 ~~~p~wsp~ 426 (429)
T PRK01742 418 VKFPAWSPY 426 (429)
T ss_pred CCCcccCCC
Confidence 556888874
No 223
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.51 E-value=2.9e-14 Score=151.13 Aligned_cols=232 Identities=19% Similarity=0.323 Sum_probs=174.0
Q ss_pred ccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC
Q 007768 265 DYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK 344 (590)
Q Consensus 265 d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~ 344 (590)
|.+|| ++.+.++....+.|......++.+.+||.+.|+.++.+.. .-++++++.|..|++|.+ ..+.++..+.+|++
T Consensus 199 Drtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvWrl-~~~~pvsvLrghtg 275 (1113)
T KOG0644|consen 199 DRTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVWRL-PDGAPVSVLRGHTG 275 (1113)
T ss_pred ccccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhhhcccCceEEEEec-CCCchHHHHhcccc
Confidence 33444 3444444444445556667788899999999999999988 789999999999999999 78999999999999
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCc--------------EEEEe---------cCC--------C--------
Q 007768 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--------------VIRTF---------STG--------K-------- 385 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--------------~~~~~---------~~~--------~-------- 385 (590)
.|++|+|+|-. +.+.||++++||.+-.- .+..+ ..+ +
T Consensus 276 avtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 276 AVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred ceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 99999999954 77889999999987110 00000 000 0
Q ss_pred cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEE
Q 007768 386 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
....+-....++...+.+++-.+-.+.+|++-+|.+.+.+.+|...+..+.++|-+.+ ..+++.||...|||+-.+.++
T Consensus 352 ~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 352 SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 0001111111122244555556778899999999999999999999999999997665 458899999999999888888
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~ 504 (590)
+....+ ...+....|+++|..++....-|.++|+....+
T Consensus 432 k~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 432 KHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred eeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 777665 456667799999999999888899999876543
No 224
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=4.7e-12 Score=117.23 Aligned_cols=231 Identities=11% Similarity=0.135 Sum_probs=163.2
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCC---------c-EEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEE
Q 007768 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETG---------Q-VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~---------~-~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 413 (590)
.|..-+|+|.+++|+.|..+|.|.+..+.+. + .+..+. .....+.+.|.. .+|++|+ ||.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-----hheeecc-CceEEE
Confidence 4566789999999999999999999988642 1 122222 233445555552 2355554 599999
Q ss_pred EeCCCCce------EEEE--cCc-----CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEE
Q 007768 414 WDMNTKEI------TQEY--DQH-----LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 414 wD~~t~~~------~~~~--~~h-----~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
|..+.... +.+. ..| -..|+++...|..+.++.++.|+.++.||+.+++..+.+. +|...+.++..
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeee
Confidence 98764321 1111 112 2468999999988888888899999999999998777765 69999999998
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcc-----cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEE
Q 007768 481 HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 481 sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
-.....+++|+.||++++||+++.+....+..+.... ...+|.+++. +..+|++|+ ...+.+|.+++.++..
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTC 241 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceE
Confidence 6666789999999999999999987766554443321 2345555555 556888876 4479999999998888
Q ss_pred EEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 556 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 556 ~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.|.. ...|..+.|.. ..++++|....|.-|
T Consensus 242 vfpi-pa~v~~v~F~~---d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 242 VFPI-PARVHLVDFVD---DCVLIGGEGNHVQSY 271 (325)
T ss_pred EEec-ccceeEeeeec---ceEEEeccccceeee
Confidence 7763 34577788854 467777765555544
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.49 E-value=2.8e-13 Score=130.16 Aligned_cols=222 Identities=19% Similarity=0.207 Sum_probs=157.1
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC
Q 007768 348 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 427 (590)
Q Consensus 348 ~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~ 427 (590)
-++|+|+|+++++++.- .+.|-|.++-+..+.|..-..+.-+.|..+. -.++.+...++.|.+|++...+-...++.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads--~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADS--CHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccc--eeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46899999999999865 7888899988877777665555556666543 36677778899999999999988888888
Q ss_pred cCCceeEEEEeCCCCEEE-EEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007768 428 HLGAVNTITFVDSNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~-s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~ 506 (590)
...++.+++|+|+|+.++ +..-+-.|.+|.+.+......- -....+..++|+|+|++.+.++.-.....+.+.....
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 888999999999997655 5556889999999887654332 2345568999999999999887653322222221111
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEcC--CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~--dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
....+.+.-. ....+.+.|+|||..|++=.. +-.|++|.. .-.+..+.|+| .+++|+.|+.|+
T Consensus 168 W~ll~~f~~d--T~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~ 232 (447)
T KOG4497|consen 168 WILLKEFKLD--TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQ 232 (447)
T ss_pred HHHHHhcCCC--cccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEEEecc-ccceEEeeccch
Confidence 1112222222 123456899999998875432 222222221 13578899999 788999999999
Q ss_pred cEEEc
Q 007768 585 LIKYW 589 (590)
Q Consensus 585 ~I~iW 589 (590)
.+||-
T Consensus 233 ~lrvl 237 (447)
T KOG4497|consen 233 MLRVL 237 (447)
T ss_pred hhhhh
Confidence 99874
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=5.5e-13 Score=134.31 Aligned_cols=256 Identities=16% Similarity=0.238 Sum_probs=190.5
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceE--EEEecCCCCCcEEEEEECCCeE
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~lvsg~~dg~I 411 (590)
.+...+..|.+.|..|.|+..|..|++|+.|..|.+||+.+++.+..|..+|...+ ..|.|.... .-+++++.||.+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCce
Confidence 34456788999999999999999999999999999999999999999988776554 346665443 568889999999
Q ss_pred EEEeCCC-Cc--eEEEEcCcCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEee--cCCCC---ceeEEEEcC
Q 007768 412 VQWDMNT-KE--ITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMH---SMPSISLHP 482 (590)
Q Consensus 412 ~iwD~~t-~~--~~~~~~~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~---~i~~i~~sp 482 (590)
++=.+.. +. -...+..|.++|.-++..|... .|.+++.|+.+.-+|++...+...+. ..+.. ....++.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9876643 22 2445667999999999998754 68999999999999998765443332 12222 567888898
Q ss_pred CCC-EEEEEEcCCeEEEEEcCCceee---cccccccCc----ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--C-
Q 007768 483 NTN-WLAAQSLDNQILIYSTRERFQL---NKKKRFAGH----IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--C- 551 (590)
Q Consensus 483 ~g~-~la~~s~dg~I~iwd~~~~~~~---~~~~~~~~~----~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--~- 551 (590)
... .+++++.|..+++||.+.-... ..+..+..+ .....|++++|+.++.-|++...|-.|+++.-.- |
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 654 8999999999999998753211 011222221 1245688999998888887888888999995322 2
Q ss_pred ---------eEEEE-EecCCC--cEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 552 ---------KVFRT-LKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ---------~~~~~-l~~h~~--~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+.. +++|.. .|.++-|.--...++++|+.-|.|.|||
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 22333 778864 5777766533678999999999999997
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=1.3e-11 Score=119.68 Aligned_cols=273 Identities=21% Similarity=0.369 Sum_probs=180.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe----eEEEeccCC------------CCeEEEEEccCC--CEEEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK----CMRTYMGHS------------KAVRDISFCNDG--TKFLT 360 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~----~~~~~~~h~------------~~V~~l~fspdg--~~l~s 360 (590)
..-|.+|.|... |.+|++|..+|.|.++.-....+ ....++.|. ..|..+.|.+++ ..|+.
T Consensus 25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456899999998 99999999999999997643333 344455553 358889999854 57888
Q ss_pred EecCCeEEEEECCCCcEEE-EecCC-----CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-cCcCCcee
Q 007768 361 ASYDKNIKYWDTETGQVIR-TFSTG-----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVN 433 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-~~h~~~V~ 433 (590)
.+.|.+|++|.+....... .+... ..+..+.+ .+.+..+-.+. ..+.+.+ ..|..-|+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~---------p~~~~~~~~ve------a~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL---------PVEGRHDLEVE------ASPRRVYANAHTYHIN 168 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeec---------eeeccccceee------eeeeeeccccceeEee
Confidence 8899999999986543222 01000 00001100 11111111110 0122222 46888999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--CC-----CCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCce
Q 007768 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE--PH-----MHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--~~-----~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~ 505 (590)
+|.++.+...++++. |-.|.+|++........+.. |+ ..-|++..|||. .++|+..++.|.|++.|++...
T Consensus 169 SIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 169 SISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 999999998888765 67899999876443333322 22 234888999996 5788888899999999998432
Q ss_pred eecc-cccccCcc----------cccceEEEEEcCCCCEEEEEcCCCcEEEEeC-CCCeEEEEEecCCC-----------
Q 007768 506 QLNK-KKRFAGHI----------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KSCKVFRTLKCHEG----------- 562 (590)
Q Consensus 506 ~~~~-~~~~~~~~----------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~-~t~~~~~~l~~h~~----------- 562 (590)
.... .+.+.... .-..|..+.|++.|+||++-+.- +|++||+ ...+++.+++.|..
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 1111 11111100 12346789999999999998754 7999999 56778888887742
Q ss_pred -c---EEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 563 -V---CIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 -~---V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
. -..|+|+. +...++||+....+++++
T Consensus 327 D~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 327 DAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cchhheeEEEEcC-CcceEecccccceEEEec
Confidence 2 25688988 677999999999999875
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=6.7e-12 Score=123.58 Aligned_cols=209 Identities=13% Similarity=0.133 Sum_probs=163.1
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC---CeeEEEeccCCCCeEEEEEccCC-CEEEEEecC--CeE
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYMGHSKAVRDISFCNDG-TKFLTASYD--KNI 367 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~---~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~D--g~I 367 (590)
+..+-+++|..++.. ...|++|-.+|.+.+|..... ...+..+..+ ..+..|.-++.. ..+++|+.. ..+
T Consensus 100 ~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred ccccccccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccce
Confidence 445667778888765 347888999999999998311 1233333333 456777777744 455668888 889
Q ss_pred EEEECCCCcEEEEecCCC----------cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEE
Q 007768 368 KYWDTETGQVIRTFSTGK----------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTIT 436 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~----------~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~ 436 (590)
.|||++..+.+..-.... ....+.|.+... ...|++++.-+.+++||.+.+ +++..+.--..+|+++.
T Consensus 176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG 254 (412)
T ss_pred eeeecccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence 999999886665543321 122344544422 467999999999999999976 67888888889999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007768 437 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~ 507 (590)
..|.++.+++|..-|.+..||++.+...........++|.+|..||.+.+|++++.|..|+|||+.+...+
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99999999999999999999999999988866778899999999999999999999999999999885544
No 229
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.46 E-value=3.4e-12 Score=122.61 Aligned_cols=203 Identities=14% Similarity=0.222 Sum_probs=151.6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE
Q 007768 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~ 422 (590)
..+|+|.+|++|...++.+.....|.||.....+. -+..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------------------------------------w~~~ 48 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------------------------------------WEPA 48 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------------------------ceec
Confidence 45677777777777777776666666665432211 1345
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc---EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEE
Q 007768 423 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~---~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iw 499 (590)
.++..|...|++|+|.|..++|++++.|..-++|....+. +...+. .+....+++.|+|.++.|++|+....|.||
T Consensus 49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVc 127 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVC 127 (361)
T ss_pred eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEE
Confidence 6777899999999999999999999999999999984332 222222 367789999999999999999999999999
Q ss_pred EcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC------------------CCeEEEEEecCC
Q 007768 500 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK------------------SCKVFRTLKCHE 561 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~------------------t~~~~~~l~~h~ 561 (590)
-+......-..+..+- .....|.+++|+|++-+|++|+.|+..++|..- -|.++..+....
T Consensus 128 y~E~ENdWWVsKhikk-PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g 206 (361)
T KOG1523|consen 128 YYEQENDWWVSKHIKK-PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG 206 (361)
T ss_pred EEecccceehhhhhCC-ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC
Confidence 8765443322222222 225678899999999999999999999999641 133444554556
Q ss_pred CcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 562 GVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 562 ~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+-|..+.|+| .+..|+-.+.|++|.+=
T Consensus 207 gwvh~v~fs~-sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 207 GWVHGVLFSP-SGNRLAWVGHDSTVSFV 233 (361)
T ss_pred CceeeeEeCC-CCCEeeEecCCCceEEe
Confidence 7899999999 78899999999998763
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=4.5e-11 Score=127.77 Aligned_cols=233 Identities=16% Similarity=0.188 Sum_probs=154.6
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCcEEEEecCCCcceEEEEecCCCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.++|. .+...+.+..+...+...+|+|+|++|+.++.. ..|.+||+.+++...............|++++.
T Consensus 170 ~~l~~~d~--~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~- 246 (417)
T TIGR02800 170 YELQVADY--DGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS- 246 (417)
T ss_pred ceEEEEcC--CCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC-
Confidence 35777776 344455566677789999999999999987754 479999999987655444444445567776543
Q ss_pred CcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeecCCCC
Q 007768 399 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
.++++.+.++ .|++||+.++.... +..+........|+|++++|+.++.. + .|+++++...... .+. ....
T Consensus 247 -~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~ 322 (417)
T TIGR02800 247 -KLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGG 322 (417)
T ss_pred -EEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCC
Confidence 4555555444 59999998876443 33455556678999999988876653 3 5888888766543 332 2345
Q ss_pred ceeEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC---cEEEEe
Q 007768 474 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd 547 (590)
.+..+.|+|++++|+.++.++ .|.+||+.++.... +... .......|+|+|++|+..+.++ .+++.+
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~----l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV----LTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE----ccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 567889999999999988776 78899987643221 1111 1122468999999988776543 355555
Q ss_pred CCCCeEEEEEecCCCcEEEEEE
Q 007768 548 WKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
. ++.....+..+.+.+..+.|
T Consensus 396 ~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 T-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C-CCceeeECCCCCCCcCCCCC
Confidence 3 45555555555555555555
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=9.6e-10 Score=114.27 Aligned_cols=273 Identities=10% Similarity=0.220 Sum_probs=174.0
Q ss_pred EEEEeCC----CcEEEEecCCCCeeEEEe--ccCCCCeEEEEEccCCCEEEEEec----CCeEEEEECCCC--c--EEEE
Q 007768 315 ILSAGMD----TKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCNDGTKFLTASY----DKNIKYWDTETG--Q--VIRT 380 (590)
Q Consensus 315 L~sgs~D----g~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fspdg~~l~s~s~----Dg~I~vWd~~t~--~--~~~~ 380 (590)
++.|+.. +.|.+|.+......+... ..-......|+++|++++|+++.. ++.|..|.+... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4555555 688888883333222221 123445677999999999999877 478999988764 3 3344
Q ss_pred ec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-CceEEE---Ec----------CcCCceeEEEEeCCCCEEE
Q 007768 381 FS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQE---YD----------QHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 381 ~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-~~~~~~---~~----------~h~~~V~~i~~~p~~~~l~ 445 (590)
.. .+..+..+.+.+++. .++++...+|.|.++++.. +.+... +. .......++.++|++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEESSSCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eccCCCCcEEEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 44 456666677766543 4555556799999999987 433322 21 1234578999999999888
Q ss_pred EEeC-CCcEEEEECCCCc--E--EEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcC--Cce--eecccccccC
Q 007768 446 TSSD-DKSLRVWEFGIPV--V--IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTR--ERF--QLNKKKRFAG 515 (590)
Q Consensus 446 s~s~-Dg~I~iwdl~~~~--~--~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~--~~~--~~~~~~~~~~ 515 (590)
+... ...|++|++.... . ...+..+.......++|+|+++++++.. .++.|.+|++. .+. .+.....+..
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 7643 3479999997654 2 2334446667788999999999886665 56889999987 221 1111222211
Q ss_pred -cccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCC--CC--eEEEEEecCCCcEEEEEEcCCCCCEEEEEe-CCCcEEE
Q 007768 516 -HIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWK--SC--KVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKY 588 (590)
Q Consensus 516 -~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~--t~--~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~Dg~I~i 588 (590)
.........|.++|||++|+++. ..+.|.+|++. ++ +.+..+.......+.++++| ++++|+++. .++.|.+
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEE
Confidence 11112567899999999988776 56789999983 33 34455554455579999999 556666555 6778887
Q ss_pred cC
Q 007768 589 WD 590 (590)
Q Consensus 589 WD 590 (590)
|+
T Consensus 319 f~ 320 (345)
T PF10282_consen 319 FD 320 (345)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=9.1e-11 Score=125.92 Aligned_cols=234 Identities=12% Similarity=0.125 Sum_probs=155.2
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCC
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 399 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (590)
.|.++|. .+...+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 180 ~l~~~d~--~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDY--DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECC--CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC--
Confidence 3666676 344455566677889999999999999877654 369999999887655433333334566777543
Q ss_pred cEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCCc
Q 007768 400 NILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHS 474 (590)
Q Consensus 400 ~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~~ 474 (590)
.++++...+| .|++||+.+++... +..+........|+|+++.|+..+. ++ .|+++++..+....... ....
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~ 332 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNY 332 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCC
Confidence 4555555555 68899999886543 4445556777899999998877664 33 57778887665433221 1223
Q ss_pred eeEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeC
Q 007768 475 MPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDW 548 (590)
Q Consensus 475 i~~i~~sp~g~~la~~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~ 548 (590)
.....|+|+|++|+..+..+ .|.+||+.++.... +.. .. ......|+|||++|+..+.+ ..|+++++
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~-----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TS-----LDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CC-----CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 34578999999998877543 58888987654321 111 11 11236899999998876643 35777787
Q ss_pred CCCeEEEEEecCCCcEEEEEEcC
Q 007768 549 KSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 549 ~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
. +.....+..+.+.+...+|+|
T Consensus 406 ~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 406 N-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred C-CCceEECcCCCCCcCCCccCC
Confidence 4 444455666667778888987
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=7.2e-11 Score=121.35 Aligned_cols=269 Identities=16% Similarity=0.249 Sum_probs=170.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEE-----ec-----CCeEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-----SY-----DKNIK 368 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-----s~-----Dg~I~ 368 (590)
..+++..+++++ |.+++.+ .+..++|++..... .+.+...- .+.++.|+|-|++|.+- .. .-.+.
T Consensus 34 ~~~~~v~~~S~~-G~lfA~~-~~~~v~i~~~~~~~-~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNN-GRLFAYS-DNQVVKVFEIATLK-VVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCC-CcEEEEE-cCCeEEEEEccCCc-EEEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 344667778887 7766655 46789999984333 33333222 78999999999988763 11 24578
Q ss_pred EEECCCCcEEEEecCCCcc-eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-------
Q 007768 369 YWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS------- 440 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~------- 440 (590)
+|+++++.....+...... ++..|+.+.. +++-...+.+++|++...+.+.. .-|...|+.+.++|.
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEE
Confidence 9999996655555443322 5666666543 44444456677777665322111 113344444444443
Q ss_pred ---------------------------------------------CCE-EE--EEeCC---------CcEEEEECCCCcE
Q 007768 441 ---------------------------------------------NRR-FV--TSSDD---------KSLRVWEFGIPVV 463 (590)
Q Consensus 441 ---------------------------------------------~~~-l~--s~s~D---------g~I~iwdl~~~~~ 463 (590)
|.- |+ ++.-| .++++.++.....
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 221 11 11111 2344444442222
Q ss_pred EEEeecCCCCceeEEEEcCCCCEEEEE--EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc---
Q 007768 464 IKYISEPHMHSMPSISLHPNTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--- 538 (590)
Q Consensus 464 ~~~~~~~~~~~i~~i~~sp~g~~la~~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--- 538 (590)
... ....++|.+++|+|++.-|+++ -+-..+.|||++..-.. ... .+.-.++-|+|.|++|+.++
T Consensus 264 ~V~--L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~---df~-----egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 264 SVP--LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF---DFP-----EGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred EEe--cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE---eCC-----CCCccceEECCCCCEEEEeecCC
Confidence 222 2457899999999999776654 46678999999764222 111 24445689999999988765
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC------CCcEEEcC
Q 007768 539 GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW------DGLIKYWD 590 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~------Dg~I~iWD 590 (590)
.-|.|-|||+.+.+++..+.+... +-+.|+| ++.+++|+.. |+.|+||+
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~P-dGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKAANT--TVFEWSP-DGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCCceEEEeccchhhccccccCCc--eEEEEcC-CCcEEEEEeccccEEecCCeEEEE
Confidence 458999999999999999987654 5689999 6778887775 78899995
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1e-10 Score=125.70 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=153.3
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCC
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 399 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (590)
.|.++|. ++...+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 199 ~l~i~d~--dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADY--DGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeC--CCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC--
Confidence 4666676 333345566677889999999999999877543 368899999887644333333334566777543
Q ss_pred cEEEEEECCCe--EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCCc
Q 007768 400 NILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHS 474 (590)
Q Consensus 400 ~~lvsg~~dg~--I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~~ 474 (590)
.++++...++. |+++|+.+++... +..+........|+|+++.|+..+. ++ .|+++|+..+.... +.. ....
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~-~g~~ 351 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF-EGEQ 351 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec-CCCC
Confidence 56666666664 8888998876543 4445556778899999998877664 33 47777776665433 221 2222
Q ss_pred eeEEEEcCCCCEEEEEEcC-C--eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-CC--cEEEEeC
Q 007768 475 MPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EG--KCWFWDW 548 (590)
Q Consensus 475 i~~i~~sp~g~~la~~s~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg--~I~iwd~ 548 (590)
....+|+|+|++|+..+.+ + .|.++|+.++.... +. ... ......|+|+|++|+..+. +| .|++++.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt--~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT--STR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc--CCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 3457899999998887654 3 45667776653221 11 111 1113579999998876554 33 3777886
Q ss_pred CCCeEEEEEecCCCcEEEEEEcC
Q 007768 549 KSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 549 ~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
++.....+..+.+.+...+|+|
T Consensus 425 -~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 -DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCCceEECcCCCCCcCCCccCC
Confidence 6666777777777788889988
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.41 E-value=4.1e-12 Score=129.41 Aligned_cols=196 Identities=20% Similarity=0.310 Sum_probs=131.8
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCeeEEEec----cCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCcEEEEecC
Q 007768 309 PKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 309 p~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
|. +.-|+.|-.-|.|.+.|... .+..+.+. -....|+|+.|-| +...|+.+-.+|.+.++|.+ +..
T Consensus 183 ~~-g~dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~~ 253 (636)
T KOG2394|consen 183 PK-GLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IVC 253 (636)
T ss_pred CC-CcceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------ccc
Confidence 44 56677788888898888732 22111111 1346899999999 55677777889999999872 112
Q ss_pred CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 007768 384 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV 463 (590)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~ 463 (590)
+....+......++ .|.....- ...+..++..+.--.+.|+.++|+|+|++|++.+.||.+||||+.+...
T Consensus 254 ~~t~p~~~~~k~~~---~f~i~t~k------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 254 GATAPSYQALKDGD---QFAILTSK------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL 324 (636)
T ss_pred cCCCCcccccCCCC---eeEEeeee------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH
Confidence 22222222222221 12221111 0112234444444456899999999999999999999999999988776
Q ss_pred EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007768 464 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 464 ~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
+..+. ..-+...|++|+|||+||++|+.|.-|.||++..+..+ ..-.+| ..+|..|+|.
T Consensus 325 lg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV---ARGqGH--kSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV---ARGQGH--KSWVSVVAFD 383 (636)
T ss_pred HHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE---Eecccc--ccceeeEeec
Confidence 55443 35668999999999999999999999999999876544 233344 6788888887
No 236
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=2.8e-11 Score=117.39 Aligned_cols=312 Identities=15% Similarity=0.205 Sum_probs=209.6
Q ss_pred cccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC---CCeeE
Q 007768 260 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCM 336 (590)
Q Consensus 260 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---~~~~~ 336 (590)
.+...|...|.|+--.....-....-+ -..+++++.+.+. ...|+.|-..|++.-+.+.. ....+
T Consensus 40 ~~~s~drtvrv~lkrds~q~wpsI~~~-----------mP~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedfnkm~~~ 107 (404)
T KOG1409|consen 40 ISVSEDRTVRVWLKRDSGQYWPSIYHY-----------MPSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDFNKMTFL 107 (404)
T ss_pred EEccccceeeeEEeccccccCchhhhh-----------CCCCceEeeeecc-ceEEEEEEecceEEEEEhhhhhhhcchh
Confidence 345678899999775554322222222 2456888999988 78899999999999887743 34566
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeC
Q 007768 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 416 (590)
+.+..|...|..+-|+-...++++++.|..+.---.+.+..+..+..........+.. .+...|...|.|.+..+
T Consensus 108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~-----~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA-----LYAFVGDHSGQITMLKL 182 (404)
T ss_pred hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee-----EEEEecccccceEEEEE
Confidence 7788999999999999999999999999887666566665554332211111111111 14556666777766554
Q ss_pred C--CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC
Q 007768 417 N--TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 417 ~--t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg 494 (590)
. .-.++..+.+|.+.+.+++|.+....|.+|..|..+.+||+....-+......|...+..+...+--+.+.+++.||
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg 262 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDG 262 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCC
Confidence 3 44678889999999999999999999999999999999999888777777778999999999888889999999999
Q ss_pred eEEEEEcCCceeecccc--------------------------cccCcc---cccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007768 495 QILIYSTRERFQLNKKK--------------------------RFAGHI---VAGYACQVNFSPDGRFVMSGDGEGKCWF 545 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~--------------------------~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~i 545 (590)
.|.+|+.+......+.- .+..|. ....++..+-+....+...| ..-.+++
T Consensus 263 ~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg-~e~~vR~ 341 (404)
T KOG1409|consen 263 GIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG-FEFSVRV 341 (404)
T ss_pred eEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc-ceeEEEE
Confidence 99999987533221100 001111 11122222222222222222 2223444
Q ss_pred EeCC-------CCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 546 WDWK-------SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 546 wd~~-------t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
-|.- +..++..+..-...|+.+.+-. .-.+|+|+|.|..|+|||
T Consensus 342 ~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd 392 (404)
T KOG1409|consen 342 CDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWD 392 (404)
T ss_pred ecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEe
Confidence 4421 1122333322223478888776 456899999999999998
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=2.9e-11 Score=114.58 Aligned_cols=147 Identities=20% Similarity=0.372 Sum_probs=104.9
Q ss_pred eEEEEeCCCCEEEEEeC----------CCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEEE--cCCeEEEE
Q 007768 433 NTITFVDSNRRFVTSSD----------DKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIY 499 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~s~----------Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~s--~dg~I~iw 499 (590)
..+.|+++|.+|++-.. -+...||.++.. ..+..+......+|..++|+|+|+.|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788899887765433 133555555332 334444334556799999999999876653 56799999
Q ss_pred EcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC---CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCE
Q 007768 500 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 576 (590)
|++. ..+ ..+. ...+..+.|||+|++|++|+. .|.|.|||..+.+.+..+. |. .++.++|+| ++++
T Consensus 89 d~~~-~~i---~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsP-dGr~ 157 (194)
T PF08662_consen 89 DVKG-KKI---FSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSP-DGRY 157 (194)
T ss_pred cCcc-cEe---Eeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcC-CCCE
Confidence 9963 222 2222 244567999999999998864 4779999999999888775 33 478999999 7778
Q ss_pred EEEEeC------CCcEEEcC
Q 007768 577 VATCGW------DGLIKYWD 590 (590)
Q Consensus 577 l~s~g~------Dg~I~iWD 590 (590)
|+++.. |+.++||+
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEEEeccceeccccEEEEE
Confidence 888774 78889985
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=9.5e-11 Score=125.70 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=134.7
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE-EEecCC--e
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDK--N 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~---Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg--~ 366 (590)
+.+..|...|.+.+|+|+ ++.|+.++. ...|.+|++ ..+.. ..+..+.+...++.|+|+|+.|+ +.+.+| .
T Consensus 197 ~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl-~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 197 QTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDL-ATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred eEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEEC-CCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 445577788999999999 777777664 346999999 44443 23334445566889999999776 445555 5
Q ss_pred EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007768 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
|.+||+.+++...............|++++. .++++...+| .|+++|+.+++.... ..+......+.|+|+|++|
T Consensus 274 Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 274 IYVMDLGSRQLTRLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNARASVSPDGKKI 350 (433)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEE
Confidence 9999999887654333323334566766542 3444443444 477778877764332 2233445578999999999
Q ss_pred EEEeCCC---cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC---CeEEEEEcCCc
Q 007768 445 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRER 504 (590)
Q Consensus 445 ~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d---g~I~iwd~~~~ 504 (590)
+..+.++ .|.+||+.++... .+.. ........|+|+|++|+..+.+ +.|.++++...
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8776443 5999999777654 3332 2234567999999988877654 45777777543
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=7e-11 Score=111.95 Aligned_cols=118 Identities=14% Similarity=0.339 Sum_probs=90.3
Q ss_pred cCCceeEEEEeCCCCEEEEE--eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC---CeEEEEEcC
Q 007768 428 HLGAVNTITFVDSNRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTR 502 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~--s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d---g~I~iwd~~ 502 (590)
..++|.+++|+|+++.|++. ..++.|.+||++ ...+..+ ....+..+.|+|+|++|++++.+ |.|.+||.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 34579999999999987655 456799999996 4444444 34577889999999999998754 679999999
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCCCCeEEEEE
Q 007768 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~t~~~~~~l 557 (590)
+...+.... ...+..++|||+|++|+++.. |..++||+. +|+++...
T Consensus 134 ~~~~i~~~~-------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 134 KKKKISTFE-------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCEEeeccc-------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 765553322 133568999999999998874 678999997 46666544
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=3.8e-09 Score=109.79 Aligned_cols=265 Identities=14% Similarity=0.236 Sum_probs=168.9
Q ss_pred CCeeEEEEcCCCCCEEEEEeC----CCcEEEEecCCC-Ce--eEEEeccCCCCeEEEEEccCCCEEEEEec-CCeEEEEE
Q 007768 300 KGVSAIRFFPKYGHLILSAGM----DTKVKIWDVVNS-GK--CMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWD 371 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~----Dg~I~iWd~~~~-~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd 371 (590)
.....|+++|+ +++|++... +|.|..|.+... +. .+............++++|++++|+++.+ +|.|.+++
T Consensus 37 ~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 44667889998 788888776 579999998544 33 33334334556678999999999999886 79999999
Q ss_pred CCC-CcEEEE---e-----------cCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc--eE--EEEc-CcCCc
Q 007768 372 TET-GQVIRT---F-----------STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--IT--QEYD-QHLGA 431 (590)
Q Consensus 372 ~~t-~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~--~~--~~~~-~h~~~ 431 (590)
+.. +..... + .....+..+.+.|++ ..++++......|++|++.... +. ..+. .....
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 987 433322 2 112334566666644 3556666667799999997654 32 2222 33456
Q ss_pred eeEEEEeCCCCEEEEEe-CCCcEEEEECC--CCc--EEEEeecC---C--CCceeEEEEcCCCCEEEEEEc-CCeEEEEE
Q 007768 432 VNTITFVDSNRRFVTSS-DDKSLRVWEFG--IPV--VIKYISEP---H--MHSMPSISLHPNTNWLAAQSL-DNQILIYS 500 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~--~~~--~~~~~~~~---~--~~~i~~i~~sp~g~~la~~s~-dg~I~iwd 500 (590)
-..+.|+|+++++++.. .++.|.++++. .+. .+..+... . ......|.++|+|++|+++.. .+.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 78999999999876554 57789999987 322 22222211 1 125678999999999888764 57899999
Q ss_pred cCCc-eeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeC--CCCeEEEEEe-cCCCcEEEEEE
Q 007768 501 TRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDW--KSCKVFRTLK-CHEGVCIGCEW 569 (590)
Q Consensus 501 ~~~~-~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~--~t~~~~~~l~-~h~~~V~~v~~ 569 (590)
+... ..+.....+... ......++++|+|++|++++ .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 274 ~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9422 222222222211 23366799999999998877 5678998866 5777655442 22334566665
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.1e-10 Score=123.19 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=138.8
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE-EEecCCe-
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKN- 366 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~---Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~- 366 (590)
.+.+..|...|.+.+|+|+ |+.|+..+. +..|.+||+ ..+.. ..+..+.+.+.+.+|+|||+.|+ +.+.++.
T Consensus 194 ~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl-~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDL-ETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred cEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEEC-CCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 3456688889999999999 777776653 468999999 44443 34555667788999999999876 4555554
Q ss_pred -EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007768 367 -IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 367 -I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
|.+||+.++................|++++. .++++...+| .|+++|+.+++... +..+.+.+....|+|+|+.
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGS--QIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcCCCC--EEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCE
Confidence 7788998887655433333344566776543 3444433333 68888987765543 3334556777899999999
Q ss_pred EEEEeCC---CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC------CeEEEEEcCCc
Q 007768 444 FVTSSDD---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD------NQILIYSTRER 504 (590)
Q Consensus 444 l~s~s~D---g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d------g~I~iwd~~~~ 504 (590)
|+..+.+ ..|.+||+..... ..+.. ...+..+.|+|+|++|+..+.+ ..|.++++...
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 9887654 3588888755433 33332 2346788999999998876543 25778887654
No 242
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.3e-10 Score=122.38 Aligned_cols=221 Identities=15% Similarity=0.160 Sum_probs=142.1
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEe---CCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEE-ecCC--eE
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAG---MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDK--NI 367 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs---~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg--~I 367 (590)
.+..+...+.+.+|+|+ |+.|+..+ .+..|.+|++ ..++. ..+......+..+.|+|||+.|+.. +.+| .|
T Consensus 193 ~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl-~~G~~-~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTL-ANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred EeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEEC-CCCCe-EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 34456778999999999 77776543 2457999998 44533 2222333445678999999988865 4344 59
Q ss_pred EEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007768 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
.+||+.+++...............|+|++. .++++...++ .|+++|+.+++.. .+..+.....+..|+|+|++|+
T Consensus 270 ~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 270 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEECCCCCEEEccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEE
Confidence 999999887766554444455667777542 3444443344 5666677776543 3333445567789999999988
Q ss_pred EEeCC---CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCe---EEEEEcCCceeecccccccCcccc
Q 007768 446 TSSDD---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ---ILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 446 s~s~D---g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~---I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
..+.+ ..|++||+.++... .+... .......|+|+|++|+..+.++. +.++++.... .. .+.++ .
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~---~l~~~--~ 417 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KA---RLPAT--D 417 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eE---ECccC--C
Confidence 76644 35888998777543 33322 23346789999999999988764 6667774432 22 22222 2
Q ss_pred cceEEEEEcC
Q 007768 520 GYACQVNFSP 529 (590)
Q Consensus 520 ~~v~~v~~sp 529 (590)
+.+...+|+|
T Consensus 418 ~~~~~p~Wsp 427 (429)
T PRK03629 418 GQVKFPAWSP 427 (429)
T ss_pred CCcCCcccCC
Confidence 3455577776
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=3.2e-09 Score=108.41 Aligned_cols=259 Identities=15% Similarity=0.108 Sum_probs=160.5
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec----------CCeEEEEECCCCcEEEEecCCCcce---
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIPY--- 388 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~----------Dg~I~vWd~~t~~~~~~~~~~~~~~--- 388 (590)
++|.+.|. ...+.+.++..-..+- .+ ++||++.|+++.. +..|.+||+.+++.+..+..+..+.
T Consensus 27 ~~v~ViD~-~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDG-EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEEC-CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 89999999 6778777776433332 34 9999998887765 7899999999999999988755433
Q ss_pred -----EEEEecCCCCCcEEEEEEC-CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 007768 389 -----VVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 389 -----~~~~~~~~~~~~~lvsg~~-dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
.+.+++++. .++++--. +..|.++|+.+++.+.++.-.. ...-...+ +.. +.+-+.||......+....
T Consensus 104 ~~~~~~~~ls~dgk--~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~-~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 104 GTYPWMTSLTPDNK--TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDT-FFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred cCccceEEECCCCC--EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCc-cEEEeecCceEEEEecCCC
Confidence 777777653 34444435 8999999999999998886422 11111121 111 2222344544443332211
Q ss_pred EEEEee----cCCCCce-eEEEEcC-CCCEEEEEEcCCeEEEEEcCCceee--cccccccC-----cccccceEEEEEcC
Q 007768 463 VIKYIS----EPHMHSM-PSISLHP-NTNWLAAQSLDNQILIYSTRERFQL--NKKKRFAG-----HIVAGYACQVNFSP 529 (590)
Q Consensus 463 ~~~~~~----~~~~~~i-~~i~~sp-~g~~la~~s~dg~I~iwd~~~~~~~--~~~~~~~~-----~~~~~~v~~v~~sp 529 (590)
...... .....++ ..-.+.+ +++++.+... |.|.+.|+...... ..+..+.. ....+...-++++|
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 111110 0000000 0003455 7877777665 99999996442211 11111110 11122333499999
Q ss_pred CCCEEEEEc----------CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEE-EeCCCcEEEcC
Q 007768 530 DGRFVMSGD----------GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT-CGWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs----------~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s-~g~Dg~I~iWD 590 (590)
+++.+++.. ..+.|.++|+.+++.+..+.. ...+..++++|++..+|++ ...++.|.+.|
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 999988742 225799999999999999885 3468999999955525554 44688888876
No 244
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.4e-10 Score=115.97 Aligned_cols=267 Identities=19% Similarity=0.305 Sum_probs=167.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec-----------CCeEEEE
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----------DKNIKYW 370 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-----------Dg~I~vW 370 (590)
-+-+.|||. |.+|+|-..-| |.+|-- .+-..++.+ .|. .|.-+.|||..++|+|-+. ...|+||
T Consensus 213 etyv~wSP~-GTYL~t~Hk~G-I~lWGG-~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPK-GTYLVTFHKQG-IALWGG-ESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCC-ceEEEEEeccc-eeeecC-ccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 466889999 99999988776 889965 232333333 254 4899999999999998754 2579999
Q ss_pred ECCCCcEEEEecCCCcc----eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007768 371 DTETGQVIRTFSTGKIP----YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s 446 (590)
|+.+|...+.|...... ....|+.++. +++......|.||+..+..++..-.-.-..|....|+|.++.|+-
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdK----y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDK----YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCc----eeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 99999999998773322 2456665542 555555578999987764433222222344555566665554442
Q ss_pred EeCC-----C----------------------------------------------------cEEEEECCCCc-EEEEee
Q 007768 447 SSDD-----K----------------------------------------------------SLRVWEFGIPV-VIKYIS 468 (590)
Q Consensus 447 ~s~D-----g----------------------------------------------------~I~iwdl~~~~-~~~~~~ 468 (590)
-... . .+-|+.++... ++..
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-- 441 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-- 441 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee--
Confidence 1100 0 11111111110 0000
Q ss_pred cCCCCceeEEEEcCCCCEEEEEEcC---CeEEEEEcCC-ceeecccccccCcccccceEEEEEcCCCCEEEEEc---CCC
Q 007768 469 EPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEG 541 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~la~~s~d---g~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~dg 541 (590)
-.....|...+|.|.|+.+++-+.+ .++.+|.+.+ .......+.+. ....+.+.|+|.|++++.+. ..|
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g 517 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRG 517 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEeccccc
Confidence 1234567788999999988776644 6788888773 22222222222 24456799999999988764 578
Q ss_pred cEEEEeCCCCeEEEEEe-cCCCcEEEEEEcCCCCCEEEEEeCCCc
Q 007768 542 KCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 542 ~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
.+.++|+....+..+-. .|. ..+.+.|.| .+++++|++.-+.
T Consensus 518 ~l~F~D~~~a~~k~~~~~eh~-~at~veWDP-tGRYvvT~ss~wr 560 (698)
T KOG2314|consen 518 DLEFYDTDYADLKDTASPEHF-AATEVEWDP-TGRYVVTSSSSWR 560 (698)
T ss_pred ceEEEecchhhhhhccCcccc-ccccceECC-CCCEEEEeeehhh
Confidence 99999987533322222 243 358899999 8899999987443
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.4e-10 Score=119.29 Aligned_cols=243 Identities=16% Similarity=0.190 Sum_probs=164.3
Q ss_pred cCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC
Q 007768 341 GHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~ 419 (590)
.|...-+.|..+|||++++ +|.+--.|++||+....+...- +-...++.|.+..+.-.-++.-..|..|-+...-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER--hlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER--HLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee--cccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 4777889999999999765 6677889999999866554333 222333344333333233444455666654322111
Q ss_pred ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEE
Q 007768 420 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 420 ~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iw 499 (590)
..... -...-..|+++.-.--|++++....|+-+++..+..+..+.. ....+.+|.+++...+|++|+.+|.|.+|
T Consensus 127 hy~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 127 HYRTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred eeeee---cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceEEEe
Confidence 11111 112234566654444455555567788899998887776653 55789999999999999999999999999
Q ss_pred EcCCceeeccccc------ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe-cCCCcEEEEEEcCC
Q 007768 500 STRERFQLNKKKR------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPL 572 (590)
Q Consensus 500 d~~~~~~~~~~~~------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~ 572 (590)
|.++......+.. ..+......|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+.
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 9988665443322 1222223458999999999999999999999999999998876543 22348899999874
Q ss_pred C-CCEEEEEeCCCcEEEcC
Q 007768 573 E-QSKVATCGWDGLIKYWD 590 (590)
Q Consensus 573 ~-~~~l~s~g~Dg~I~iWD 590 (590)
+ +..|+|+. ...++|||
T Consensus 283 ~~q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 283 DQQNKVVSMD-KRILKIWD 300 (703)
T ss_pred CCCceEEecc-hHHhhhcc
Confidence 3 34566554 56789997
No 246
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=5.5e-10 Score=119.49 Aligned_cols=200 Identities=12% Similarity=0.129 Sum_probs=127.4
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE-EEecCCeEE
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIK 368 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~ 368 (590)
+.+..+...|.+.+|+|+ ++.|+..+.+ ..|.+||+ ..++... +......+.+.+|+|||+.|+ +.+.+|...
T Consensus 189 ~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl-~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 189 QSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDL-ATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred eEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEEC-CCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 445577888999999999 7777766543 35999999 4554432 333445667899999999887 456777766
Q ss_pred EE--ECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEE--eCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007768 369 YW--DTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQW--DMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 369 vW--d~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw--D~~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
|| |+.++.. ..+.. ........|++++. .+++++..++...+| ++.++...... .+........|+|+|++
T Consensus 266 Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~--~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSGL-RRLTQSSGIDTEPFFSPDGR--SIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCCc-EECCCCCCCCcCeEEcCCCC--EEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCE
Confidence 66 4555543 33332 22233456666543 444454444555555 55555433222 22334456889999999
Q ss_pred EEEEeCCC---cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC---eEEEEEcC
Q 007768 444 FVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIYSTR 502 (590)
Q Consensus 444 l~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg---~I~iwd~~ 502 (590)
|+.++.++ .|++||+..+... .+.. ........|+|+|++|+..+.++ .+.+.++.
T Consensus 342 Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 342 LAYISRVGGAFKLYVQDLATGQVT-ALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEEEccCCcEEEEEEECCCCCeE-EccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 98877654 5999999877644 3322 22346789999999988887654 35555553
No 247
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.29 E-value=3.4e-09 Score=111.71 Aligned_cols=258 Identities=16% Similarity=0.138 Sum_probs=169.6
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
+..++.++.+|.+..+|. .+++.+....... .+.+.-.. .+..++.++.++.|..||..+|+.+..+..........
T Consensus 105 ~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDA-EDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 567888889999999998 5777776654322 22211111 34567778889999999999999988876543321111
Q ss_pred --EecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC----------ce-eEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007768 392 --LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG----------AV-NTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 392 --~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~----------~V-~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
..|.-.. ..++++..++.+..+|+++|+.+........ .+ .+..+ .+..+++++.+|.++.||.
T Consensus 182 ~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 182 GSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEEC
Confidence 0010011 3578888899999999999987765431110 01 11112 2457888888999999999
Q ss_pred CCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 459 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
.+++.+-..... ...... ..+..+++++.+|.|..+|..++..+.....+.+..... ... .+..|++++
T Consensus 259 ~tG~~~W~~~~~---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss----p~i--~g~~l~~~~ 327 (377)
T TIGR03300 259 RSGRVLWKRDAS---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA----PAV--VGGYLVVGD 327 (377)
T ss_pred CCCcEEEeeccC---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc----CEE--ECCEEEEEe
Confidence 888766544311 111222 246778888899999999998876554432222221111 112 467899999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCCcEE-EEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 539 GEGKCWFWDWKSCKVFRTLKCHEGVCI-GCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~~h~~~V~-~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.+|.|+++|..+++.+.+++.+...+. +.++. + ..|+.++.||.|..|
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--C-CEEEEEeCCceEEEe
Confidence 999999999999999999987775433 33343 2 358889999998765
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=3e-11 Score=137.52 Aligned_cols=252 Identities=15% Similarity=0.277 Sum_probs=184.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
++.+.....++...-|.....+. .++.+-..|.++.=+|...+.+||+.||.|++|....++.+..+.......+.+
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~---~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV---MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred cccCCcccCCccccceeccccee---EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 34445555566666665522222 233455678888889988999999999999999999999988887765544443
Q ss_pred EecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE---eCCCcEEEEECCCCcEEEEee
Q 007768 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS---SDDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~---s~Dg~I~iwdl~~~~~~~~~~ 468 (590)
..+.. .++.+.++..||.|.+|.+. .++....+.|....+.+.|.. ..++++ ++++.+.+||...+.....+.
T Consensus 2257 ~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2257 SRFNH-QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhcc-cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 33332 34678899999999999987 566777788999999999875 556655 357899999986655544555
Q ss_pred cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
..|.+.++++++.|....|++|+.+|.|++||++..+.....+. +. ...++++|+..|.|+||++
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEc
Confidence 67999999999999999999999999999999987655433332 22 4568999999999999999
Q ss_pred CCCeEEEEEec---CCCc--EEEEEEcCCCCCEEEEEeCCCc
Q 007768 549 KSCKVFRTLKC---HEGV--CIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 549 ~t~~~~~~l~~---h~~~--V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
....+++++.. |.+. ++.....-.-...|.+||.||+
T Consensus 2398 s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2398 SEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 98888777753 2221 1112222222457889999885
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=1.8e-08 Score=102.95 Aligned_cols=252 Identities=11% Similarity=0.110 Sum_probs=161.9
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCeeEEEeccC-------CCCeEEEEEc
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFC 352 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fs 352 (590)
+.+.++..-..+-- + ++|+ ++.|+++. .+..|.+||+ .+.+.+..+.-. ...-..++++
T Consensus 38 ~v~g~i~~G~~P~~-~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~-~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 38 RVLGMTDGGFLPNP-V-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDP-QTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred EEEEEEEccCCCce-e-ECCC-CCEEEEEeccccccccCCCCCEEEEEEC-ccCcEEeEEccCCCchhhccCccceEEEC
Confidence 44455543222222 4 8999 66665554 4889999999 678888776532 2234478999
Q ss_pred cCCCEEEEEe-c-CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-Cce-EEE---E
Q 007768 353 NDGTKFLTAS-Y-DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEI-TQE---Y 425 (590)
Q Consensus 353 pdg~~l~s~s-~-Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-~~~-~~~---~ 425 (590)
|||++|+... . +..|.+.|+.+++.+..+..+.......... .. +.+-+.||......+.+ ++. ... +
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---Cc--cEEEeecCceEEEEecCCCceEEeeeeee
Confidence 9999999876 3 6899999999999999998766444443322 21 23444566555544432 221 111 1
Q ss_pred cCcCCce-eEEEEeC-CCCEEEEEeCCCcEEEEECCCC-----cEEEEeecC------CCCceeEEEEcCCCCEEEEEE-
Q 007768 426 DQHLGAV-NTITFVD-SNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEP------HMHSMPSISLHPNTNWLAAQS- 491 (590)
Q Consensus 426 ~~h~~~V-~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~------~~~~i~~i~~sp~g~~la~~s- 491 (590)
.....++ ..-.|.+ +++++.++.. |+|.+.|+... ..+..+... ....+.-++++++++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 1100000 0003455 7777777766 99999996433 222222111 122334499999999888843
Q ss_pred ---------cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEc-CCCcEEEEeCCCCeEEEEE
Q 007768 492 ---------LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 492 ---------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~t~~~~~~l 557 (590)
..+.|.++|..+...+..+.. ...+..++++|||+ +|++.+ .++.|.++|..+++.+.++
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeC------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 225799999998877655443 23566799999999 887766 5788999999999999988
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=1.5e-09 Score=103.51 Aligned_cols=259 Identities=22% Similarity=0.315 Sum_probs=173.0
Q ss_pred CCCcEEEEecCCCCeeEE--Ee-ccCCCCeEEEEEcc---CCC-EEEEEecCCeEEEEECCCCcEEEEecC---CC----
Q 007768 320 MDTKVKIWDVVNSGKCMR--TY-MGHSKAVRDISFCN---DGT-KFLTASYDKNIKYWDTETGQVIRTFST---GK---- 385 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~--~~-~~h~~~V~~l~fsp---dg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~---~~---- 385 (590)
..|.+.+|++ .+.+.+. ++ ..-...+..+.|.. +|. .++-+-..|.|.++..........+.. ..
T Consensus 44 R~Gkl~Lys~-~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 44 RSGKLHLYSL-EDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred eccceEEEee-cccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe
Confidence 3477888988 3333222 22 22345678888875 455 556677789999998765444333322 11
Q ss_pred cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCc
Q 007768 386 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~--~~~~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
...++.+...+ .-++++..+|.+.+-+..... .++.++.|.-++....|+.. .+.+.+|++|+.+..||++.+.
T Consensus 123 ~~lslD~~~~~---~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 123 EALSLDISTSG---TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeeEEEeeccC---ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 12234444443 348899999999976665553 34588899999999999864 4578899999999999999654
Q ss_pred E-EEEeecCCCCceeEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC--CEEEEEc
Q 007768 463 V-IKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGD 538 (590)
Q Consensus 463 ~-~~~~~~~~~~~i~~i~~sp-~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg--~~l~sgs 538 (590)
. +..-...|...|.+|.-+| .+.++++|+.|-.|++||.++..+. .+.+ ...+.|..+.++|.- ++|+++-
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP----l~~~-~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP----LFKA-KVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc----cccC-ccccceEEEEecchhhhHHHHHHH
Confidence 3 3332345777888888876 4789999999999999999864322 1222 234778999999953 3444444
Q ss_pred CCCcEEEEeCCCC--e---EEEEEecCCCcEEEEEEcCCCCCEEEEEe-CCCcEE-Ec
Q 007768 539 GEGKCWFWDWKSC--K---VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIK-YW 589 (590)
Q Consensus 539 ~dg~I~iwd~~t~--~---~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~Dg~I~-iW 589 (590)
.+| .+|-+.... + .+...+.|.+-+..-.|.. ...+|+||+ .|..|+ +|
T Consensus 275 h~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 275 HNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hcC-ceEEEecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeee
Confidence 444 555555432 3 3455667888888889965 466899987 577755 66
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=5.2e-11 Score=121.41 Aligned_cols=173 Identities=23% Similarity=0.381 Sum_probs=136.4
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC------eeEEEeccCCCCeEEEEEccCCCEEEEEecC
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
-+..|.||+..|..+.--.+ .+-+++++.|.+|++|.+...+ .|..++..|..+|.++.|-.+-++++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 35678899999999987666 7889999999999999995433 4778899999999999999988887765 7
Q ss_pred CeEEEEECCCCcEEEEec---CCCcceEEEEecCCCCCcEEEEE-ECCCeEEEEeCCCCceEEEEc-----CcCCceeEE
Q 007768 365 KNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYD-----QHLGAVNTI 435 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg-~~dg~I~iwD~~t~~~~~~~~-----~h~~~V~~i 435 (590)
|-|.+||.--++.+.... .......+...++-+. +++++| +...+|+++|.+..+.+.+++ +..+.+.++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~-~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDR-HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcc-hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 899999988777665332 2233344444444333 556666 678999999999988776664 344668999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 007768 436 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 436 ~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~ 467 (590)
+..+.|++++.+-..|.|.+.|.+++..+..+
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 99999999999999999999999998877644
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=2.6e-10 Score=124.92 Aligned_cols=200 Identities=14% Similarity=0.218 Sum_probs=159.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcce--EEEEecCCCCCcEEEEEECCCeEEEEeCCCCce
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~ 421 (590)
..|....+.-....++.++.+..+.+||...+.....+....... +....-+....-++++|+.-+.|.+|+....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 334445555577788999999999999999888887776654432 333333444557889999999999999984444
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
-..+.+|.+.|.++.++-+|+++++.|+|.++++|++.+........-.|...+..++++|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 34678999999999999999999999999999999999887766444579999999999998 9999999999999976
Q ss_pred CCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 502 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
... .+ ..+.+|. ...+..++..++...+++++.||.+++|++..
T Consensus 246 ~~~-~l---~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NGT-QL---EVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc-ee---hhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 543 22 3566664 45677899999999999999999999999754
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=7.5e-09 Score=110.45 Aligned_cols=237 Identities=12% Similarity=0.121 Sum_probs=147.1
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE---EEecC--CeEEEEECCCCcEEEEecCCCcceEEEEecCCC
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL---TASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 397 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~---s~s~D--g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
.|.+.|. ++...+.+......+..-.|+|||+.++ +...+ ..|.+.++.+++...............|+|++.
T Consensus 166 ~l~~~d~--dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDY--DGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcC--CCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 4555665 4444445555566677889999997532 33333 358888998887655444444445567777654
Q ss_pred CCcEEEEEECCC----eEEEEeCCCC---ceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEE--ECCC-CcEEEE
Q 007768 398 KQNILLAGMSDK----KIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVW--EFGI-PVVIKY 466 (590)
Q Consensus 398 ~~~~lvsg~~dg----~I~iwD~~t~---~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iw--dl~~-~~~~~~ 466 (590)
.++++...+| .+.+|++..+ ...+....+.+.....+|+|+|+.|+..+ .+|...|| ++.. ......
T Consensus 244 --~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 244 --LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred --EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 4555443333 3444777653 33333333334456789999999888766 45654555 4432 222333
Q ss_pred eecCCCCceeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC---C
Q 007768 467 ISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---E 540 (590)
Q Consensus 467 ~~~~~~~~i~~i~~sp~g~~la~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---d 540 (590)
+.. ....+....|+|+|++|+..+.+ ..|.+||+.++...... .. ...+....|+|||++|+.... .
T Consensus 322 lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----~~--~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 322 LTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----TS--PENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred ecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----CC--CCCccceEECCCCCEEEEEECCCCC
Confidence 332 33456788999999998877654 46999999776443211 11 123446899999998875432 3
Q ss_pred CcEEEEeCCCCeEEEEEecCCCcEEEEEEcC
Q 007768 541 GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 541 g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
..|++||+.+++...... ..+.+...+|+|
T Consensus 395 ~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~ 424 (428)
T PRK01029 395 SELYLISLITKKTRKIVI-GSGEKRFPSWGA 424 (428)
T ss_pred ceEEEEECCCCCEEEeec-CCCcccCceecC
Confidence 569999998877654443 455677889988
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=8.3e-09 Score=108.77 Aligned_cols=258 Identities=12% Similarity=0.093 Sum_probs=168.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
+..+++++.+|.|..+|. .+++.+..+.-.......... ++..++.++.++.|..+|..+|+.+.............
T Consensus 65 ~~~v~v~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDA-ETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEc-cCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 568888889999999998 577777665544332222222 56788888899999999999999998876654332211
Q ss_pred EecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCce-----eEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 007768 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V-----~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~ 466 (590)
... ...+++++.++.|+.||.++++.+..+......+ .+.... +..++.+..++.+..+|..++..+-.
T Consensus 142 ~v~----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LVA----NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EEE----CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 111 2457778889999999999999888775433211 112222 24778888889999999988876543
Q ss_pred eecCCCC---c---eeEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 467 ISEPHMH---S---MPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 467 ~~~~~~~---~---i~~i~~sp--~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
....... . +..+.-+| .+..+++++.+|.++.||..++....... ... . ......+..|++++
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~~------~--~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-ASS------Y--QGPAVDDNRLYVTD 286 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cCC------c--cCceEeCCEEEEEC
Confidence 3211100 0 00011111 35678888889999999998876543322 111 1 11122567888889
Q ss_pred CCCcEEEEeCCCCeEEEEEecC-CCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 539 GEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+|.|+.+|..+++.+...... .....+... .+..|++++.+|.|.+||
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEE
Confidence 9999999999999988766322 222222223 234788889999998875
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1e-09 Score=115.22 Aligned_cols=277 Identities=13% Similarity=0.160 Sum_probs=188.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--------------eeEEEeccCCCCeEEEEEccCCCEEEEEecC
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--------------KCMRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--------------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
.....|+.|+.. ..++++|+.||.++|-.+.... ..-+++.||...|.-+.|+.+.+.|-++..+
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 345789999998 7899999999999999773211 1224678999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE-EEcCcCCceeEEEEeCCCC
Q 007768 365 KNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~-~~~~h~~~V~~i~~~p~~~ 442 (590)
|.|.||-+-.|........ .....+..+++..+ +..+.....||.|.+=.+...++.. .++ ......+.|+++.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLE 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHH
Confidence 9999999887765443322 22223333333332 2457777778877776655433221 111 22345789999999
Q ss_pred EEEEEeCCCcEEEEECCCCc-------EEEE---eecCCCCceeEEEEc--------CCCCEEEEEEcCCeEEEEEcCCc
Q 007768 443 RFVTSSDDKSLRVWEFGIPV-------VIKY---ISEPHMHSMPSISLH--------PNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~-------~~~~---~~~~~~~~i~~i~~s--------p~g~~la~~s~dg~I~iwd~~~~ 504 (590)
.++.+-..|.+.+||....- +... ........|..+.|. |+...|+++..+|.+.|..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 99999899999999975321 1111 111223346666664 46778999999999988754432
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCC---------cEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCC
Q 007768 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 575 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~ 575 (590)
....... . ...+..+.|+++|.+|++++.+. .|+++. .-|+.+.+++.....|++++|-. .+-
T Consensus 250 ~~Pvv~d--t----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg-~gL 321 (1189)
T KOG2041|consen 250 PEPVVVD--T----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG-TGL 321 (1189)
T ss_pred CCCeEEe--c----ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC-Cce
Confidence 2211111 1 24566799999999999887532 466665 57888999999999999999976 343
Q ss_pred EEEEEeCCCcEEE
Q 007768 576 KVATCGWDGLIKY 588 (590)
Q Consensus 576 ~l~s~g~Dg~I~i 588 (590)
.+ .-..|+.|.+
T Consensus 322 ri-A~Avdsfiyf 333 (1189)
T KOG2041|consen 322 RI-AIAVDSFIYF 333 (1189)
T ss_pred EE-EEEecceEEE
Confidence 33 3344666654
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=6.7e-10 Score=121.73 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=143.9
Q ss_pred cEEEEEECCCeEEEEeCCCCceEEEEcCcCC----ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCce
Q 007768 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLG----AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 475 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~----~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i 475 (590)
..++.++.+..+.+||...+.....+..... ...-+-++++.-++++|+--+.|.+|+........ ...+|.+.|
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~i 178 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSI 178 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecccCCce
Confidence 4688888999999999998877666543221 12223344556689999999999999986333322 234799999
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEE
Q 007768 476 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 476 ~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
.++.++-+|.++++.|.|..+++|++.+..... ...-+| ...+..++|.|. .|++++.|.+.++|+. .+..+.
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgH--saRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~ 251 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGH--SARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLE 251 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC--cccccc--cceeEEEEeccc--eeEEeccceEEEEEec-ccceeh
Confidence 999999999999999999999999999876553 233445 677888999998 9999999999999975 455555
Q ss_pred EEecCCC-cEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 556 TLKCHEG-VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 556 ~l~~h~~-~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+..|.+ .|..++..+ +...++|++.||.|++||
T Consensus 252 ~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhh
Confidence 8888864 789999998 788999999999999997
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=3.5e-08 Score=115.79 Aligned_cols=246 Identities=10% Similarity=0.141 Sum_probs=164.0
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc-C-------------CCCeEEEEEccCCCEEEEEec-CCeE
Q 007768 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-H-------------SKAVRDISFCNDGTKFLTASY-DKNI 367 (590)
Q Consensus 303 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h-------------~~~V~~l~fspdg~~l~s~s~-Dg~I 367 (590)
..+++.+.++.++++-+.++.|++||. .+..+..+.+ . -.....|+++++++.|+++.. .+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~--~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL--DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC--CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 467888765778888888999999997 4444444432 1 123578999998887666554 5789
Q ss_pred EEEECCCCcEEEEecC-----------------CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC---
Q 007768 368 KYWDTETGQVIRTFST-----------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--- 427 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~--- 427 (590)
+++|+.++........ -..+..+++.+. ++.++++...++.|++||..++.... +.+
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~ 725 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGY 725 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEECCCCeEEEEECCCCeEEE-EecCCc
Confidence 9999987654322110 123445666663 33678888889999999998775432 111
Q ss_pred ------------cCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEee-c-------------------CCCCc
Q 007768 428 ------------HLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYIS-E-------------------PHMHS 474 (590)
Q Consensus 428 ------------h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~-~-------------------~~~~~ 474 (590)
.....+.|+++|++. .+++-+.++.|++||+.++....... . .....
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 112356799999988 45556677899999997654321110 0 00112
Q ss_pred eeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccc-cC----c---ccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007768 475 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AG----H---IVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 475 i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~-~~----~---~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
...++++++|.++++.+.++.|++||..++........- .+ . ..-.....++++++|+++++-+.++.|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 458899999998888889999999999765433211100 00 0 001235679999999998888899999999
Q ss_pred eCCCCeE
Q 007768 547 DWKSCKV 553 (590)
Q Consensus 547 d~~t~~~ 553 (590)
|+.+++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9988765
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.3e-09 Score=109.32 Aligned_cols=252 Identities=10% Similarity=0.171 Sum_probs=161.7
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCC--CEEEE-----EecCCeEEEEECCCC
Q 007768 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG--TKFLT-----ASYDKNIKYWDTETG 375 (590)
Q Consensus 303 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg--~~l~s-----~s~Dg~I~vWd~~t~ 375 (590)
.++.|+++ . .|+.=-..+.+++|++.+....... -|...|..+.++|.+ ..+++ .|.-+.|+||.....
T Consensus 129 W~~qfs~d-E-sl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSID-E-SLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccc-h-hhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 57788887 3 3333334567999998543333333 367889999999963 33332 355678999987633
Q ss_pred cEEEEecCC--CcceEEEEecCCCCCcEEEEEEC-----------CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC
Q 007768 376 QVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMS-----------DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 376 ~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~-----------dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
..-..+... .....+.+.++.....+|+..+. ...++++++......-.+ .-.++|.+++|+++++
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGR 283 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCC
Confidence 222111111 11112333333333345554443 246888888843433333 3579999999999998
Q ss_pred EEEEE--eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcc
Q 007768 443 RFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 443 ~l~s~--s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
.|+++ -.-..+.|||++... +..+ ..++-.++-|+|.|++|+.++.+ |.|-|||..+...+.....
T Consensus 284 EF~VvyGfMPAkvtifnlr~~~-v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----- 354 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLRGKP-VFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----- 354 (566)
T ss_pred EEEEEEecccceEEEEcCCCCE-eEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----
Confidence 77654 456789999987543 3333 45567889999999999998876 7899999988655533322
Q ss_pred cccceEEEEEcCCCCEEEEEcC------CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCC
Q 007768 518 VAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 572 (590)
...+-+.|+|||+++++++. |..++||+. +|.++....-.. ....+.|-|.
T Consensus 355 --~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 355 --ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred --CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence 23345899999999998875 677999996 555554332222 4667777763
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=5.5e-09 Score=108.47 Aligned_cols=209 Identities=18% Similarity=0.218 Sum_probs=157.6
Q ss_pred cCCCEEEEEecCCeEEEEECCCCcEEEEecCC----CcceEEEEecC-----------------CCCCcEEEEEECCCeE
Q 007768 353 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTG----KIPYVVKLNPD-----------------DDKQNILLAGMSDKKI 411 (590)
Q Consensus 353 pdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~----~~~~~~~~~~~-----------------~~~~~~lvsg~~dg~I 411 (590)
|...+||....||.+++|++.+++....|... ....+..|.-. ..+..+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999999888777532 22223333211 1134578889999999
Q ss_pred EEEeCCCCceEEEEc--CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEE
Q 007768 412 VQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 412 ~iwD~~t~~~~~~~~--~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~ 489 (590)
.+|++..+++...+. .|.+.|+++.++.+-..|.+++.|+.+..|+....+.++... .....+.+++++|+++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCCEEEe
Confidence 999999999888775 699999999999999999999999999999998887776664 46667899999999999998
Q ss_pred EEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC-----CCEEEEEc-CCCcEEEEeCCC----CeEEEEEec
Q 007768 490 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-----GRFVMSGD-GEGKCWFWDWKS----CKVFRTLKC 559 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-----g~~l~sgs-~dg~I~iwd~~t----~~~~~~l~~ 559 (590)
++ ++|.+||+.+...+ ..|.|| .+.|.++.|.-+ |.+++++. .+..+.+|-+.. ....+.+..
T Consensus 162 as--~~ik~~~~~~kevv---~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~ 234 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVV---ITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTV 234 (541)
T ss_pred cc--ceEEEEEccCceEE---EEecCC--CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeecc
Confidence 76 78999999987655 668888 677888888776 77776654 455577775532 333445554
Q ss_pred CCCcEEEEEE
Q 007768 560 HEGVCIGCEW 569 (590)
Q Consensus 560 h~~~V~~v~~ 569 (590)
.+-+|+.=.+
T Consensus 235 ~dipv~~ds~ 244 (541)
T KOG4547|consen 235 PDIPVTSDSG 244 (541)
T ss_pred CCCCeEeccc
Confidence 4444443333
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.18 E-value=6.4e-09 Score=111.13 Aligned_cols=201 Identities=15% Similarity=0.164 Sum_probs=133.9
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEE-EecCC--e
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDK--N 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg--~ 366 (590)
+.+..+...+.+.+|+|+ +++|+.++.. ..|++|++ ..+... .+..+...+.+++|+|+|+.|+. .+.++ .
T Consensus 183 ~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~-~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 183 QTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDL-ATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred EEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEEC-CCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 445567778999999999 7777776643 47999999 444332 33345566778999999987764 44444 5
Q ss_pred EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007768 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
|.+||+.++................|.+++ ..++++....+ .|+++|+.+++.. .+..+...+..+.|+|++++|
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEE
Confidence 899999887655443333233344566543 23444443333 6888898877643 343455667788999999999
Q ss_pred EEEeCCC---cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC---eEEEEEcC
Q 007768 445 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIYSTR 502 (590)
Q Consensus 445 ~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg---~I~iwd~~ 502 (590)
+.++.++ .|.+||+..... ..+.. ........|+|++++|+..+.++ .+.+++..
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGE-RVLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCe-EEccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 9888776 789999877543 33322 12345568999999988887764 35555543
No 261
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=8.2e-09 Score=109.69 Aligned_cols=212 Identities=14% Similarity=0.203 Sum_probs=151.4
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCC-----------CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc--
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKY-----------GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-- 353 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~-----------g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-- 353 (590)
..-+.++++.-|...|+.++|.|.. .-+|+++...|.|.|||. .....+..+..|..+|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~-~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF-VLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe-hhhhhhhhhcCCCcchhheeeeecc
Confidence 3457788899999999999999841 236788888999999999 56777777888999999999987
Q ss_pred -CC-CEEEEEecCCeEEEEECCCCcEEEEecCCCcce-EEEEecCCCCCcEEEEEECCCeEEEEeCC-------CCceEE
Q 007768 354 -DG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMN-------TKEITQ 423 (590)
Q Consensus 354 -dg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-------t~~~~~ 423 (590)
+. ..|+.-....+|.+|+..+|+........+.+. ++.+.|.+. ..+..-+..|.+.+.+.- .++..+
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 34 456666667899999999999999887766554 466666654 345555556666666542 123333
Q ss_pred EEcCcCC----------------c---------eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEE
Q 007768 424 EYDQHLG----------------A---------VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 478 (590)
Q Consensus 424 ~~~~h~~----------------~---------V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i 478 (590)
.-..|.. . ...++|+|.-+.++.......+.++|+.-..++..+.. ..+.+.-+
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi-er~~akfv 278 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI-ERGGAKFV 278 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe-ccCCccee
Confidence 3222222 0 11245677766666666778899999988888777754 44455666
Q ss_pred EEcCCC--CEEEEEEcCCeEEEEEcC
Q 007768 479 SLHPNT--NWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 479 ~~sp~g--~~la~~s~dg~I~iwd~~ 502 (590)
.+-|++ ..|++...||.+.+|-.+
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEee
Confidence 776654 578999999999998654
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.15 E-value=3.3e-08 Score=100.93 Aligned_cols=273 Identities=13% Similarity=0.187 Sum_probs=181.1
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCC---------------cEEEEecCCCCeeEEEeccCCCC--eE-EEEEccCCCEEEEE
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDT---------------KVKIWDVVNSGKCMRTYMGHSKA--VR-DISFCNDGTKFLTA 361 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg---------------~I~iWd~~~~~~~~~~~~~h~~~--V~-~l~fspdg~~l~s~ 361 (590)
..|.-+.|+|. +++|.+-+..+ .+.+||+ .++..+..+.+...+ .. -+.|+.+..++|-.
T Consensus 72 ~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~-~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 72 PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI-ASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred CCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEec-cCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 34888999999 89999876544 4899999 688899888877666 55 68888888777654
Q ss_pred ecCCeEEEEECCCCcE-EEEecCC--CcceEEEEecCCCCCcEEEE-----EECCCeEEEEeCCCCceEEEEcCcCCcee
Q 007768 362 SYDKNIKYWDTETGQV-IRTFSTG--KIPYVVKLNPDDDKQNILLA-----GMSDKKIVQWDMNTKEITQEYDQHLGAVN 433 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~-~~~~~~~--~~~~~~~~~~~~~~~~~lvs-----g~~dg~I~iwD~~t~~~~~~~~~h~~~V~ 433 (590)
....+.|+++ +... ...+..- .......++|.++. ..|+. +...+.+++|.+..+..+..-.-....-.
T Consensus 150 -v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~-~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 150 -VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH-DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred -ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCC-ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 3357999997 3322 1112111 22334445554322 22222 35678899999987765554433333445
Q ss_pred EEEEeCCCCEEEEEe-----------CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE--cCCeEEEEE
Q 007768 434 TITFVDSNRRFVTSS-----------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIYS 500 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s-----------~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s--~dg~I~iwd 500 (590)
.+.|.+.|.+|++-- ....++|+++......... ...++|..++|.|.++.|++.+ ..-.+.++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecc
Confidence 688899888765421 2356888888743332222 4578999999999988776655 678899999
Q ss_pred cCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC---CCcEEEEeCCCCeEEE-EEecCCCcEEEEEEcCCCCCE
Q 007768 501 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWDWKSCKVFR-TLKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd~~t~~~~~-~l~~h~~~V~~v~~sp~~~~~ 576 (590)
++..-... ... ..-..+.|||.+++++.++- .|.|-+||......+. .+.+.. ..-|.|+| ++.+
T Consensus 305 lr~Nl~~~---~Pe-----~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wsp-d~qF 373 (561)
T COG5354 305 LRGNLRFY---FPE-----QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSP-DGQF 373 (561)
T ss_pred cccceEEe---cCC-----cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccC-CceE
Confidence 98752221 111 12224789999999988654 5789999987655444 666543 46688999 5666
Q ss_pred EEEEe------CCCcEEEcC
Q 007768 577 VATCG------WDGLIKYWD 590 (590)
Q Consensus 577 l~s~g------~Dg~I~iWD 590 (590)
+.+.. .|..|+|||
T Consensus 374 ~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 374 YDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred EEecCCCcccccCcceEEEE
Confidence 65543 278899996
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.4e-08 Score=109.04 Aligned_cols=202 Identities=13% Similarity=0.132 Sum_probs=129.3
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEE-EecCC--e
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDK--N 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg--~ 366 (590)
+.+..|...+...+|+|+ |+.|+..+.+ ..|.+|++ ..+... .+....+.+....|+|+|+.|+. .+.+| .
T Consensus 192 ~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l-~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 192 VTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNL-DTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred eEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEEC-CCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 345567788999999999 7777665533 36888998 444432 23333445567899999998874 44454 6
Q ss_pred EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007768 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
|.+||+.++................|++++. .++++...++ .|+++|+.+++..... ..........|+|+++.|
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~--~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDGR--TLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEE
Confidence 8888999887654333333333456666542 4555544443 6888888887644322 122234457899999999
Q ss_pred EEEeCCC---cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC---CeEEEEEcCC
Q 007768 445 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRE 503 (590)
Q Consensus 445 ~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d---g~I~iwd~~~ 503 (590)
+..+.++ .|.+||+.++.. ..+... .......|+|+|++++..+.+ ..|.++++..
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~-~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSV-RILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEccCCceEEEEEECCCCCE-EEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 8776533 588899887654 333322 122356899999998887654 3466667654
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.14 E-value=1.6e-08 Score=95.42 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=158.3
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc-----CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc--eEEEEe
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLN 393 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-----dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~--~~~~~~ 393 (590)
...|-+|+++...+-+..+. ..+.|-| ...+|+.|+..|...+|...+.+....+-..+.. ..+.-.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 34577888764443332221 2344444 4458999999999999999876654333211111 111111
Q ss_pred cCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEeecCC
Q 007768 394 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPH 471 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~~~ 471 (590)
. +...-+..++.|.++++.++.-+..........-.++++.++++++++++.++...|..|.+.... .......+.
T Consensus 125 c--d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 125 C--DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred c--ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 1 111336677778888888776543222221111238899999999999999999999999986532 223223345
Q ss_pred CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC--EEEEEcCCCcEEEEeCC
Q 007768 472 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~ 549 (590)
...-.+..|+.....+|+++.||.+.|||++....+............+.+..+.|++.|. +|+..-.-+.+.+.|++
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 5566788999999999999999999999998755443333332233578888999998765 35555566789999999
Q ss_pred CCeEEEEEec-------CC-CcEEEEEEcCCCC
Q 007768 550 SCKVFRTLKC-------HE-GVCIGCEWHPLEQ 574 (590)
Q Consensus 550 t~~~~~~l~~-------h~-~~V~~v~~sp~~~ 574 (590)
+++..+.+.. |. ..|....|+..+.
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCc
Confidence 9877665543 22 2377777776433
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.13 E-value=1.7e-09 Score=105.23 Aligned_cols=246 Identities=15% Similarity=0.270 Sum_probs=176.0
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE-CCCCcEEEEecC--CCcceEEEEecCCCCCcEEEEEECCCe
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD-TETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd-~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
.+++.+.||...|++...-|...-+++.+.|.+++||- .+.++.-..+.. +....++..... ...|++|-..|.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e---~~~L~vg~~ngt 91 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE---SRRLYVGQDNGT 91 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc---ceEEEEEEecce
Confidence 45677889999999999999888899999999999994 344444444433 333444444443 367999999999
Q ss_pred EEEEeCC----CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCE
Q 007768 411 IVQWDMN----TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 411 I~iwD~~----t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
+.-+.+. .....+.+..|...|..+-|+-...++++++.|..+.---.+.+..+....... .-+++.+.-. +
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~--~ 167 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL--Y 167 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE--E
Confidence 9988664 445566777899999999999989999999999877544333333221111000 0011111111 5
Q ss_pred EEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe-EEEEEecCCCcEE
Q 007768 487 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCI 565 (590)
Q Consensus 487 la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~-~~~~l~~h~~~V~ 565 (590)
...|...|.|.+-.+... .+..+..+.+| .+.+.+++|.+..+.|++|..|..+.+||+--.+ ....+.+|...|.
T Consensus 168 ~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQN-GCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEecccccceEEEEEeec-CCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 556666777777665432 23445667777 5678899999999999999999999999986544 3456778999998
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 566 GCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 566 ~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+...+ -...|++++.||.|.+||
T Consensus 245 ~l~~~~-~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 245 ALSYAQ-HTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhhhh-hheeeeeccCCCeEEEEe
Confidence 888877 567899999999999997
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.9e-08 Score=104.48 Aligned_cols=190 Identities=14% Similarity=0.228 Sum_probs=145.8
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc---CCCCeEEEEEc--------------------cCCCEEEEEecCC
Q 007768 309 PKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRDISFC--------------------NDGTKFLTASYDK 365 (590)
Q Consensus 309 p~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~---h~~~V~~l~fs--------------------pdg~~l~s~s~Dg 365 (590)
|....++|....||.++||+. ..++....|.. -++..++..|. .+...++-|...|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t-~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDT-AKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEc-cCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 344789999999999999999 45554444432 23334444442 2344677888899
Q ss_pred eEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007768 366 NIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
.|.++++..|+....+..+. ...+.+.. +..+...|.+++.|+.+..|+......+..+......+.+++.+|++..+
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~-~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEIL-DAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeee-cccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999999999999988543 33333333 23345689999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC-----CCEEEEE-EcCCeEEEEEcCC
Q 007768 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-----TNWLAAQ-SLDNQILIYSTRE 503 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-----g~~la~~-s~dg~I~iwd~~~ 503 (590)
++++ ++|++||+.+.+.+.++. +|.++|.++.|--. |.+++++ ..+..|.+|-+..
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9987 689999999999998886 69999999999876 6666654 3445577776543
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.6e-08 Score=107.91 Aligned_cols=218 Identities=11% Similarity=0.028 Sum_probs=129.0
Q ss_pred CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC--CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC
Q 007768 365 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
..|.+.|...+..............-.|+|++....++++...+ ..|++.++.+++..+.. ...+......|+|+|+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCC
Confidence 46777787766554433333444556788876533344455444 46888899887644332 3445556789999999
Q ss_pred EEEEEeC-CC----cEEEEECCCC--cEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEE--EcCC-ceeecccc
Q 007768 443 RFVTSSD-DK----SLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIY--STRE-RFQLNKKK 511 (590)
Q Consensus 443 ~l~s~s~-Dg----~I~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iw--d~~~-~~~~~~~~ 511 (590)
.|+..+. +| .+.+|++..+ .....+...........+|+|+|+.|+..+ .+|...+| ++.. +... .
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~---~ 320 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP---R 320 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce---E
Confidence 8887653 22 3344666542 222333322223446789999999888766 45644444 4432 1111 1
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEE-EEeCC--Cc
Q 007768 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA-TCGWD--GL 585 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~-s~g~D--g~ 585 (590)
.+... ...+....|||||++|+..+.+ ..|++||+.+++..... .....+....|+|+ ++.|+ ++..+ +.
T Consensus 321 ~lt~~--~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpD-G~~L~f~~~~~g~~~ 396 (428)
T PRK01029 321 LLTKK--YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAID-SLHLVYSAGNSNESE 396 (428)
T ss_pred EeccC--CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCC-CCEEEEEECCCCCce
Confidence 12111 1344568999999998866532 46999999988765433 23345678999994 55554 44433 34
Q ss_pred EEEcC
Q 007768 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|.+||
T Consensus 397 L~~vd 401 (428)
T PRK01029 397 LYLIS 401 (428)
T ss_pred EEEEE
Confidence 55553
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.10 E-value=3.1e-08 Score=101.18 Aligned_cols=273 Identities=16% Similarity=0.208 Sum_probs=179.4
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC-----------
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK----------- 365 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg----------- 365 (590)
.-.-++..++|||. |.+|++....| |.+|.-....++.+.. | ..|..+.|+|.+++|.+-+..+
T Consensus 30 ~~~~p~~~~~~SP~-G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 30 SENWPVAYVSESPL-GTYLFSEHAAG-VECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccCcchhheeecCc-chheehhhccc-eEEccccchhheeeee--c-CCceecccCcccceeeeeccCCccChhhccCCc
Confidence 35678999999999 89998877655 8999874444444332 3 4599999999999999876543
Q ss_pred ----eEEEEECCCCcEEEEecCCCcc---e-EEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE-EEcC-cCCceeEE
Q 007768 366 ----NIKYWDTETGQVIRTFSTGKIP---Y-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQ-HLGAVNTI 435 (590)
Q Consensus 366 ----~I~vWd~~t~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~-~~~~-h~~~V~~i 435 (590)
.+.+||+.+|..+..+.....+ + .+.|+.++. +++--....++++++ ++.... .+.. ....|...
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~----y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK----YVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecch----hhhhhccCeEEEEec-CCccccCchhhccccceeeE
Confidence 4999999999999998765544 3 666776553 333334567899997 433221 1111 13567888
Q ss_pred EEeCCCC--EEEE-----EeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-----------cCCeEE
Q 007768 436 TFVDSNR--RFVT-----SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-----------LDNQIL 497 (590)
Q Consensus 436 ~~~p~~~--~l~s-----~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-----------~dg~I~ 497 (590)
.|+|.++ .|+. ....+++++|.+.....+..... ....-..+.|++.|++|++-. ....++
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-EeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 8888743 3332 45678999999986665544322 223345678899998876542 125577
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEE--EcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCC
Q 007768 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS--GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 575 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s--gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~ 575 (590)
|+++...... ... ...+.|...+|.|.++.+++ |-....+.++|++.. +... ...+.=..+.|+| ..+
T Consensus 259 l~~~~e~~i~-V~~-----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r 328 (561)
T COG5354 259 LLRITERSIP-VEK-----DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HER 328 (561)
T ss_pred EEeecccccc-eec-----cccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-ccc
Confidence 8877632211 111 12467788999998887654 456888999998776 3332 2333445677888 566
Q ss_pred EEEEEeCC---CcEEEcC
Q 007768 576 KVATCGWD---GLIKYWD 590 (590)
Q Consensus 576 ~l~s~g~D---g~I~iWD 590 (590)
+++.+|-| |.|-+||
T Consensus 329 ~il~agF~nl~gni~i~~ 346 (561)
T COG5354 329 YILFAGFDNLQGNIEIFD 346 (561)
T ss_pred EEEEecCCccccceEEec
Confidence 77776654 4566664
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=6.9e-10 Score=126.77 Aligned_cols=192 Identities=13% Similarity=0.247 Sum_probs=143.4
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec-cCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 007768 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 295 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
++.|-..|.++.=+|. ..+.+||+.||.|++|... .+..+..+. .-...|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~-~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWG-HGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCC-CceEEecCCCceEEEEecc-CCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 3345567888888888 7889999999999999984 444443332 334889999999999999999999999999987
Q ss_pred CCcEEEEecCCCc-ceEEEEecCCCCCcEEEEEE---CCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007768 374 TGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGM---SDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 374 t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~---~dg~I~iwD~~t~---~~~~~~~~h~~~V~~i~~~p~~~~l~s 446 (590)
.+.....+++.. ..-+.|.. .++++.+ .++.+.+||..-. .++. ..|.+.++++++.|....|++
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred -CcceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEe
Confidence 333333333322 22222222 2344433 4688999997532 2344 689999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007768 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~ 507 (590)
|+.+|.|++||++..+.+..+.. ++ ...+|++++..|.|+||++.....+
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchh
Confidence 99999999999988777665532 44 6779999999999999999775444
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.08 E-value=7.1e-08 Score=111.23 Aligned_cols=274 Identities=11% Similarity=0.112 Sum_probs=176.0
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE----ecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIW----DVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iW----d~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
.....|.++.|.++ ...|+.+..+|.|.+. +. ....+...-.-...|.+++||||+..|+.++.+++|.+.+
T Consensus 73 ~~~~~ivs~~yl~d-~~~l~~~~~~Gdi~~~~~~~~~--~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt- 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLAD-SESLCIALASGDIILVREDPDP--DEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT- 148 (928)
T ss_pred CCCCcEEEEEeccC-CCcEEEEECCceEEEEEccCCC--CCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-
Confidence 34578999999999 7888888999999999 44 2333333444567899999999999999999999998874
Q ss_pred CCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce--------------EEEEcCcCCceeEEEEe
Q 007768 373 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--------------TQEYDQHLGAVNTITFV 438 (590)
Q Consensus 373 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~--------------~~~~~~h~~~V~~i~~~ 438 (590)
.+..++....... ...+....++.+...+=..|.=+.|+. ...+. +...-..|+|-
T Consensus 149 ~~fd~i~E~~l~~---------~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWR 218 (928)
T PF04762_consen 149 RDFDPISEVPLDS---------DDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWR 218 (928)
T ss_pred ccceEEEEeecCc---------cccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEEC
Confidence 5555555543321 111111223322222212221111111 01122 34456789999
Q ss_pred CCCCEEEEEeC---C---CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc---CCeEEEEEcCCceeecc
Q 007768 439 DSNRRFVTSSD---D---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL---DNQILIYSTRERFQLNK 509 (590)
Q Consensus 439 p~~~~l~s~s~---D---g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~---dg~I~iwd~~~~~~~~~ 509 (590)
.||.+|++.+- . ..|+||+-. +. +....++-.+--.+++|.|.|++||+... ...|.+|.-+.-..- .
T Consensus 219 GDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg-e 295 (928)
T PF04762_consen 219 GDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG-E 295 (928)
T ss_pred CCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee-e
Confidence 99999998874 2 579999854 33 44444455555678999999999998865 345777765432211 1
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe--EEEEEecC-CCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 510 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--VFRTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~--~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
+. +........+..+.|++|+..|+....|. |.+|-..+.. +.+.+... ...+..+.|+|.....|.....+|.+
T Consensus 296 F~-l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 296 FT-LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred Ee-cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 11 11111245678899999999999977665 9999988754 33334322 23345699999777778888776776
Q ss_pred EEc
Q 007768 587 KYW 589 (590)
Q Consensus 587 ~iW 589 (590)
..+
T Consensus 374 ~~~ 376 (928)
T PF04762_consen 374 EIY 376 (928)
T ss_pred EEE
Confidence 554
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=6.5e-09 Score=101.15 Aligned_cols=200 Identities=18% Similarity=0.349 Sum_probs=138.1
Q ss_pred CCeeEEEEcCCC-CCEEEEEeCCCcEEEEecCCCCeeE----------------------------------EEe-ccCC
Q 007768 300 KGVSAIRFFPKY-GHLILSAGMDTKVKIWDVVNSGKCM----------------------------------RTY-MGHS 343 (590)
Q Consensus 300 ~~V~~l~~sp~~-g~~L~sgs~Dg~I~iWd~~~~~~~~----------------------------------~~~-~~h~ 343 (590)
..|..|+|.+++ ...++..+.|.+|++|.+++.+... +.+ ..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 469999999873 3456777889999999985322111 111 2578
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE-EEE--ecC------CCcceEEEEecCCCCCcEEEEEECCCeEEEE
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRT--FST------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~-~~~--~~~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 414 (590)
-.|++|+++.|+..++++. |=.|.+|+++-... ... ++. ...+....|+|..- ++|+-.++.|.|++.
T Consensus 165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c--n~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC--NVFVYSSSKGTIRLC 241 (433)
T ss_pred eEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc--cEEEEecCCCcEEEe
Confidence 8899999999999999875 67899999874322 111 111 11234555666543 789999999999999
Q ss_pred eCCCCceEEE----------------EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEeecCCC-----
Q 007768 415 DMNTKEITQE----------------YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHM----- 472 (590)
Q Consensus 415 D~~t~~~~~~----------------~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~----- 472 (590)
|+|...+... +..--..|..+.|+++|+++++-+. -+|++||+.. .+++..+.. |.
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v-h~~lr~k 319 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV-HEYLRSK 319 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee-hHhHHHH
Confidence 9995432111 1122346889999999999988764 6899999943 344444321 11
Q ss_pred ----------CceeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007768 473 ----------HSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 473 ----------~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~ 504 (590)
..-..++|+.++.++++|+..+.+++|++..+
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 12345789989999999999999999996544
No 272
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=5e-08 Score=104.94 Aligned_cols=201 Identities=11% Similarity=0.100 Sum_probs=124.1
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeC-CC--cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEE-EecCCe--E
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGM-DT--KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKN--I 367 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~-Dg--~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg~--I 367 (590)
.+..+...+.+.+|+|+ |+.|+..+. ++ .|.+||+ ..++.. .+..........+|+|||+.|+. .+.++. |
T Consensus 212 ~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl-~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDI-YTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred EeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEEC-CCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 44456778999999999 666665543 33 5888888 344332 22222334457899999998875 455664 8
Q ss_pred EEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007768 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
.+||+.+++...............|++++. .++++...++ .|+++|+.+++..... ..........|+|+|++|+
T Consensus 289 y~~dl~tg~~~~lt~~~~~~~~p~wSpDG~--~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 289 YVVDIATKALTRITRHRAIDTEPSWHPDGK--SLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEE
Confidence 888998887654433333344566776543 4555554443 5777788877654322 2222344578999999988
Q ss_pred EEeCC-C--cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-C--eEEEEEcCC
Q 007768 446 TSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRE 503 (590)
Q Consensus 446 s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-g--~I~iwd~~~ 503 (590)
..+.+ + .|.++|+.++... .+... .......|+|+|+.|+..+.+ + .|.+++...
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEEecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 76653 3 4566787766543 33222 122345899999988776654 3 366777643
No 273
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.04 E-value=2e-07 Score=91.26 Aligned_cols=221 Identities=17% Similarity=0.143 Sum_probs=145.2
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEE--EccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCC
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDIS--FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~--fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
+|+|..||. .+++.+....- ...+.... ..+++..+++++.++.|..||..+|+.+..+..............
T Consensus 2 ~g~l~~~d~-~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--- 76 (238)
T PF13360_consen 2 DGTLSALDP-RTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG--- 76 (238)
T ss_dssp TSEEEEEET-TTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET---
T ss_pred CCEEEEEEC-CCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc---
Confidence 678899998 67877777643 11122222 333567788888999999999999999998876544332222221
Q ss_pred CcEEEEEECCCeEEEEeCCCCceEEEE-cCcC---CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCc
Q 007768 399 QNILLAGMSDKKIVQWDMNTKEITQEY-DQHL---GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 474 (590)
Q Consensus 399 ~~~lvsg~~dg~I~iwD~~t~~~~~~~-~~h~---~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~ 474 (590)
..+++++.++.|+.+|..+|+.+... .... .....+.....+..++++..++.|..+|+.++..+..........
T Consensus 77 -~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 -GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp -TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred -cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 35777778899999999999998884 3221 111222232337888999989999999999998877765422111
Q ss_pred ---------eeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007768 475 ---------MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 545 (590)
Q Consensus 475 ---------i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i 545 (590)
+..-.+..++ .+++++.++.+..+|+.++..+. .....+ +. .....++..|++++.++.|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~------~~-~~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISG------IY-SLPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-------EC-ECEECCCTEEEEEETTTEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCC------cc-CCceeeCCEEEEEeCCCEEEE
Confidence 1122222234 77777777764444998887543 111221 11 124567888888889999999
Q ss_pred EeCCCCeEEEE
Q 007768 546 WDWKSCKVFRT 556 (590)
Q Consensus 546 wd~~t~~~~~~ 556 (590)
||+.+|+.+..
T Consensus 227 ~d~~tG~~~W~ 237 (238)
T PF13360_consen 227 LDLKTGKVVWQ 237 (238)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCCEEeE
Confidence 99999998754
No 274
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.2e-09 Score=104.07 Aligned_cols=257 Identities=16% Similarity=0.190 Sum_probs=188.2
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC-CC-eeEEEeccCCCCeEEEEEccCCCEEEEEec-CCeEEEEECC
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SG-KCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTE 373 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~-~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~~ 373 (590)
-|...|+.+.... .+++.+++.||.++.|.-.. .+ +.+..+..|...|.+++.+-++.++.|.+. |..++++|++
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 3777788776554 58999999999999998633 22 455667789999999999999999999887 9999999999
Q ss_pred CCcEEEEecCCCcceEEEEecCCCC-C-cEEEEEECCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 374 TGQVIRTFSTGKIPYVVKLNPDDDK-Q-NILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 374 t~~~~~~~~~~~~~~~~~~~~~~~~-~-~~lvsg~~dg~I~iwD~~t~~--~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
+-..+.-+.....+..+.|...... - .+.+..-.++.|.++|-.... ....-.-|..+|.++.+++.+..+++...
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 8888777777666666665544322 1 233334457899999987653 33334569999999999999999999999
Q ss_pred CCcEEEEECCC----CcEEEEe----------ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc---
Q 007768 450 DKSLRVWEFGI----PVVIKYI----------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR--- 512 (590)
Q Consensus 450 Dg~I~iwdl~~----~~~~~~~----------~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~--- 512 (590)
.|.|..|.... +..-..+ .........++.|+|++..+.+-+.|..|+++...++.....+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998763 1110000 011344578999999999999999999999999987654332211
Q ss_pred --------------------------ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE
Q 007768 513 --------------------------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 513 --------------------------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
+..+ ....-+.++|...|++|+-|+-=| |++.++.++.+.+.+
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~-~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKH-GSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhh-cCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 0001 112234578999999999988765 889999988877665
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.02 E-value=3.1e-09 Score=112.16 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=189.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc-CCCCeEEEEEccCC--CEEEEEecCCeEEEEECCC-
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDG--TKFLTASYDKNIKYWDTET- 374 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspdg--~~l~s~s~Dg~I~vWd~~t- 374 (590)
.+++.++.++|. |.-++.++.-| +.+-|+.....+.+-+.. ..-.|-++.|++.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~-grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPS-GRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccc-cchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 467888899999 77788887766 456677555555554432 12357788898843 2333334445566888753
Q ss_pred -CcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007768 375 -GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
.+.+.-+..++...+..+.+.+....++++++.|..+..||+++. ..+..+..-......+.|+-....+++.+..+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 344444455565556666666666689999999999999999986 455555555566788999877777777788889
Q ss_pred EEEEECCCCcEEEEeecCCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007768 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
|++||++.+.........|...+..+.|..- ...+.+++.|++|++||........... .. ....+..-.+-|-|
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-vt---t~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-VT---TNFPIWRGRYLPFG 257 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-cc---ccCcceeccccccC
Confidence 9999999876655555567778888887653 3568888999999999986532221111 11 12334444455533
Q ss_pred C--EEEEEcC---------CCcEEEEeCCC-CeEEEEEecCCCcEEEEEEcCCC---------CCEEEEEeCCCcEEEc
Q 007768 532 R--FVMSGDG---------EGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLE---------QSKVATCGWDGLIKYW 589 (590)
Q Consensus 532 ~--~l~sgs~---------dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~---------~~~l~s~g~Dg~I~iW 589 (590)
. ++.-.-. +.....|+..+ .+++++|.+|+..|....|-... .-.|+|-+.|..+++|
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 2 2221111 22233444443 46799999999999888886422 2379999999999999
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=2.4e-07 Score=108.77 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=153.3
Q ss_pred EEEEEccC-CCEEEEEecCCeEEEEECCCCcEEEEecC-C--------------CcceEEEEecCCCCCcEEEEEECCCe
Q 007768 347 RDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFST-G--------------KIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 347 ~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
..+++++. ++.+++-+.++.|++||.. +..+..+.. + ..+..+++.+++ ..++++-..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g--n~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK--NLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC--CEEEEEeCCCce
Confidence 46788874 6677777778999999986 444444332 1 124455665543 234455555678
Q ss_pred EEEEeCCCCceEEEEcCc-----------------CCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeec---
Q 007768 411 IVQWDMNTKEITQEYDQH-----------------LGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISE--- 469 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~h-----------------~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--- 469 (590)
|+++|+.++.. ..+.+- ...-..++++| ++..+++.+.++.|++||...+........
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 99999887653 222110 12235799999 566667777889999999876654322110
Q ss_pred ----------CCCCceeEEEEcCCCCEEE-EEEcCCeEEEEEcCCceeeccc----------ccccCc------ccccce
Q 007768 470 ----------PHMHSMPSISLHPNTNWLA-AQSLDNQILIYSTRERFQLNKK----------KRFAGH------IVAGYA 522 (590)
Q Consensus 470 ----------~~~~~i~~i~~sp~g~~la-~~s~dg~I~iwd~~~~~~~~~~----------~~~~~~------~~~~~v 522 (590)
........|+++|+++.|+ +-+.++.|++||+.++...... ..+... ......
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0112356799999998554 4455689999998764321100 000000 001123
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe-------------cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-------------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-------------~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
..++++++|.++++-..+++|++||..++....... +.-....++++++ ++.++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 468999999988888899999999998877654321 1112467899999 66788888899999999
Q ss_pred C
Q 007768 590 D 590 (590)
Q Consensus 590 D 590 (590)
|
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 6
No 277
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.5e-06 Score=85.97 Aligned_cols=266 Identities=11% Similarity=0.203 Sum_probs=171.0
Q ss_pred CCcEEEEecCCC-Ce-eEEEeccCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCC--CcEE--EEec-CCCcceEE
Q 007768 321 DTKVKIWDVVNS-GK-CMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTET--GQVI--RTFS-TGKIPYVV 390 (590)
Q Consensus 321 Dg~I~iWd~~~~-~~-~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t--~~~~--~~~~-~~~~~~~~ 390 (590)
+.-|++|++... ++ ....+..+...++-|+|+|++++|.++-.+ |.|..|.++. |+.. .... .+..+..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 466999999522 22 122234567788999999999999988654 7788877764 4432 2222 34444556
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCC-CceEE--EEcCcCCc----------eeEEEEeCCCCEEEEEeC-CCcEEEE
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQ--EYDQHLGA----------VNTITFVDSNRRFVTSSD-DKSLRVW 456 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t-~~~~~--~~~~h~~~----------V~~i~~~p~~~~l~s~s~-Dg~I~iw 456 (590)
++..++ ..++.+....|.|.++-++. |.+.. ....|.+. +.+..+.|++++|++.+- --.|.+|
T Consensus 95 svd~~g--~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDG--RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCC--CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 665543 35555666779999999865 43221 12235554 889999999999988753 2358999
Q ss_pred ECCCCcEEEEe--ecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCc-eeeccccc---cc-CcccccceEEEEEc
Q 007768 457 EFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRER-FQLNKKKR---FA-GHIVAGYACQVNFS 528 (590)
Q Consensus 457 dl~~~~~~~~~--~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~-~~~~~~~~---~~-~~~~~~~v~~v~~s 528 (590)
++..+.....- ..........|.|||++++..+.+ .+++|.+|..... ..+..++. +. ..........|.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 99865432211 113455678899999999877665 5899999998763 22222221 11 11123445679999
Q ss_pred CCCCEEEEEcC-CCcEEEEeCCC--CeE--EEEEecCCCcEEEEEEcCCCCCEEEEEeCCC-cEEEc
Q 007768 529 PDGRFVMSGDG-EGKCWFWDWKS--CKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWDG-LIKYW 589 (590)
Q Consensus 529 pdg~~l~sgs~-dg~I~iwd~~t--~~~--~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg-~I~iW 589 (590)
+||++|.++.. ...|.+|.+.. +++ +.....+...-+...|++ ++++|++++.++ .|.+|
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEE
Confidence 99999998864 34688887643 332 222334444568999999 777888887654 35544
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=3.5e-07 Score=97.16 Aligned_cols=207 Identities=18% Similarity=0.159 Sum_probs=130.5
Q ss_pred CeEEEEEccCCCE-EEEEecC---CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC--CeEEEEeCCC
Q 007768 345 AVRDISFCNDGTK-FLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNT 418 (590)
Q Consensus 345 ~V~~l~fspdg~~-l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~t 418 (590)
.+....|+|+|+. ++..+.. ..|.++|+.+++...............|+|++. .++++.+.+ ..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS--KLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC--EEEEEEccCCCcEEEEEECCC
Confidence 7788999999985 6654443 569999999987766555444445566777553 455555444 5788889988
Q ss_pred CceEEEEcCcCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC--
Q 007768 419 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-- 493 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-- 493 (590)
+...+ +..+.+......|+|+|+.|+..+.. + .|+++|+..+...+...... ....|+|+|++|+..+..
T Consensus 267 g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 267 KTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred CcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEcCCC
Confidence 86443 43344334566899999988877643 2 68888887766543332211 124899999998887654
Q ss_pred -------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeEEEEEecCCCc
Q 007768 494 -------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGV 563 (590)
Q Consensus 494 -------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~t~~~~~~l~~h~~~ 563 (590)
..|.+.++.++... .+.. .+ ......|+|||++|+..... ..|.+.++... ....+....+.
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~~-~LT~-~~-----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~-~~~~l~~~~g~ 413 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYIR-RLTA-NG-----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN-KSFLFPLKVGK 413 (419)
T ss_pred cccCCCCcEEEEEECCCCCeE-ECCC-CC-----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC-eeEEeecCCCc
Confidence 36888888765432 1111 11 12247899999988765532 23667776443 33334433444
Q ss_pred EEE
Q 007768 564 CIG 566 (590)
Q Consensus 564 V~~ 566 (590)
+..
T Consensus 414 ~~~ 416 (419)
T PRK04043 414 IQS 416 (419)
T ss_pred cCC
Confidence 443
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.00 E-value=5e-07 Score=89.25 Aligned_cols=223 Identities=19% Similarity=0.191 Sum_probs=145.3
Q ss_pred EEEEcc-CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc
Q 007768 348 DISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 348 ~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~ 426 (590)
+++|.+ ++.++++-...+.|..|+..++.... +.... +..+.+.... ..++++... .+.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~---g~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD---GRLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT---SEEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC---CEEEEEEcC-ceEEEecCCCcEEEEee
Confidence 578888 67777777678999999998876644 33333 4555555222 345555554 45555999886544433
Q ss_pred C-----cCCceeEEEEeCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEE-EEEc
Q 007768 427 Q-----HLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSL 492 (590)
Q Consensus 427 ~-----h~~~V~~i~~~p~~~~l~s~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la-~~s~ 492 (590)
. .....+.+++.++|+..++.... |.|..++.. ....... . .......|+|+|+++.|+ +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-D-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-E-EESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-c-CcccccceEECCcchheeecccc
Confidence 2 34568899999999977776644 557777776 3333222 2 345678999999999776 4566
Q ss_pred CCeEEEEEcCCcee-ecccccc-cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEc
Q 007768 493 DNQILIYSTRERFQ-LNKKKRF-AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 493 dg~I~iwd~~~~~~-~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~s 570 (590)
.+.|..|++..... +.....+ ......+..-.+++..+|++.++....+.|.++|.. |+++..+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 78899999863221 2111211 111112346679999999998888889999999976 99999888776689999995
Q ss_pred -CCCCCEEEEE
Q 007768 571 -PLEQSKVATC 580 (590)
Q Consensus 571 -p~~~~~l~s~ 580 (590)
++...+++|.
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 4334455554
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=3e-06 Score=83.87 Aligned_cols=269 Identities=11% Similarity=0.183 Sum_probs=170.0
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEecCCC-CeeEE--EeccCCCCeEEEEEccCCCEEEEEecC-CeEEE
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNS-GKCMR--TYMGHSKAVRDISFCNDGTKFLTASYD-KNIKY 369 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~---Dg~I~iWd~~~~-~~~~~--~~~~h~~~V~~l~fspdg~~l~s~s~D-g~I~v 369 (590)
.+.+.++=|+|+|+ +++|.++.. +|.|.-|.+... +.+.. .......+-..++++++|++++++.+. |.|.+
T Consensus 37 ~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 56677899999999 778877754 578888888533 43322 222223344889999999999999874 88999
Q ss_pred EECCC-CcEE---EEecCCCc----------ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc---CcCCce
Q 007768 370 WDTET-GQVI---RTFSTGKI----------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAV 432 (590)
Q Consensus 370 Wd~~t-~~~~---~~~~~~~~----------~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~---~h~~~V 432 (590)
+-+.. |.+. ..+..... .....+.|++ ..++++.-.-.+|.+|++..+.+...-. .....-
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 98865 4322 22222111 3344455543 2344444455789999999776543221 344567
Q ss_pred eEEEEeCCCCEEEEEe-CCCcEEEEECCCC-cEEEEeec--------CCCCceeEEEEcCCCCEEEEEEcC-CeEEEEEc
Q 007768 433 NTITFVDSNRRFVTSS-DDKSLRVWEFGIP-VVIKYISE--------PHMHSMPSISLHPNTNWLAAQSLD-NQILIYST 501 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~-~~~~~~~~--------~~~~~i~~i~~sp~g~~la~~s~d-g~I~iwd~ 501 (590)
..|.|+|++++..+.+ -+++|-+|.+... ..+..+.. ........|.++++|++|.++... ..|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 8999999999877665 4889999998764 22222211 123456778999999999987543 57888877
Q ss_pred CCce-eecccccccCcccccceEEEEEcCCCCEEEEEcCC-CcEEEEeC--CCCeEEEEEe-cCCCcEEEEEEc
Q 007768 502 RERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-GKCWFWDW--KSCKVFRTLK-CHEGVCIGCEWH 570 (590)
Q Consensus 502 ~~~~-~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-g~I~iwd~--~t~~~~~~l~-~h~~~V~~v~~s 570 (590)
.... .+........+ ......+.|++.|++|+++..+ ..|.+|.. .+|++-.... .......|+.|.
T Consensus 274 ~~~~g~L~~~~~~~te--g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPTE--GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEeccC--CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 5432 12212211111 2224568999999999988864 35777755 5666654443 333445666664
No 281
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.99 E-value=3.5e-07 Score=96.96 Aligned_cols=260 Identities=9% Similarity=0.085 Sum_probs=164.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
+..++.++.+|.+..+|. .+++.+............... .+..++.++.++.|..+|..+|+.+..+..........
T Consensus 120 ~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNA-EDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 456777888999999998 678777766543221111111 24467778889999999999999998886542211000
Q ss_pred --EecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC-------ceeEEEEeC--CCCEEEEEeCCCcEEEEECCC
Q 007768 392 --LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-------AVNTITFVD--SNRRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 392 --~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~-------~V~~i~~~p--~~~~l~s~s~Dg~I~iwdl~~ 460 (590)
..|.-. ...++.+..++.+..+|..+|+.+........ ....+..+| .+..++.++.+|.+..+|..+
T Consensus 197 ~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 197 GESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 011101 13477788899999999999987765432110 000111111 245677778899999999998
Q ss_pred CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC
Q 007768 461 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 461 ~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
++.+-..... ....+.. .+..|++++.+|.+..+|..++..+-......+......+ + .+.+|+.++.+
T Consensus 276 G~~~W~~~~~---~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~----v--~~g~l~v~~~~ 344 (394)
T PRK11138 276 GQIVWKREYG---SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV----L--YNGYLVVGDSE 344 (394)
T ss_pred CCEEEeecCC---CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE----E--ECCEEEEEeCC
Confidence 8766443221 1112222 4667888889999999999887655333222221111111 1 25678889999
Q ss_pred CcEEEEeCCCCeEEEEEecCCCcEEE-EEEcCCCCCEEEEEeCCCcEEEc
Q 007768 541 GKCWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 541 g~I~iwd~~t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
|.|+++|..+|+.+...+.....+.+ ..+. + ..|+.++.||.|..+
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAI 391 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEE
Confidence 99999999999999888765433332 2332 2 378888999998765
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=2.4e-08 Score=95.94 Aligned_cols=271 Identities=20% Similarity=0.343 Sum_probs=168.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC----eeEEEeccCC------------CCeEEEEEccCC--CEEEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG----KCMRTYMGHS------------KAVRDISFCNDG--TKFLT 360 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~----~~~~~~~~h~------------~~V~~l~fspdg--~~l~s 360 (590)
...|+++.|... |.+|++|...|.|.+|.-.... +.+..+++|. ..|..|.|..++ ..|+.
T Consensus 26 ad~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 356899999888 9999999999999999864333 2233455664 347888887744 46778
Q ss_pred EecCCeEEEEECCCCcEEEEe--------cC--CCcceE---EEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-c
Q 007768 361 ASYDKNIKYWDTETGQVIRTF--------ST--GKIPYV---VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-D 426 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~--------~~--~~~~~~---~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-~ 426 (590)
.+.|.+|++|.+........- .. +..... +.. |.-.....++++. +.+.+ .
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~l-prls~hd~iiaa~--------------p~rvyaN 169 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLL-PRLSEHDEIIAAK--------------PCRVYAN 169 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhc-ccccccceEEEec--------------cceeccc
Confidence 889999999998654221111 00 000000 000 0000001111111 11122 5
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--CCC-----CceeEEEEcCC-CCEEEEEEcCCeEEE
Q 007768 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE--PHM-----HSMPSISLHPN-TNWLAAQSLDNQILI 498 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--~~~-----~~i~~i~~sp~-g~~la~~s~dg~I~i 498 (590)
.|..-|++|.|..+...++++ +|-.|.+|++........+.. |+. .-|++..|||. ...+...+..|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 688889999999888777765 467899999876543333321 232 24788899996 456777788999999
Q ss_pred EEcCCcee-eccccccc----Cc------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeEEEEEecCCC----
Q 007768 499 YSTRERFQ-LNKKKRFA----GH------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEG---- 562 (590)
Q Consensus 499 wd~~~~~~-~~~~~~~~----~~------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~---- 562 (590)
-|++.... ....+.+. +. .....|..+.|+++|+||++-+.- +|.|||+.. ..++.++..|..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHH
Confidence 99984321 11111111 10 012456789999999999988755 799999976 456777766532
Q ss_pred --------cE---EEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 563 --------VC---IGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 563 --------~V---~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
.| ..+.|+. +...+++|+.....-|
T Consensus 328 l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgi 363 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGI 363 (460)
T ss_pred HHhhhhccceeeeEEEEecC-Ccccccccccccceee
Confidence 22 3467777 5556777777655444
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=7.3e-08 Score=92.23 Aligned_cols=202 Identities=16% Similarity=0.168 Sum_probs=135.1
Q ss_pred CCCCeeEEEEcC--CCCC-EEEEEeCCCcEEEEecCCCCeeEEEeccC---CC---CeEEEEEccCCCEEEEEecCCeEE
Q 007768 298 HTKGVSAIRFFP--KYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMGH---SK---AVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 298 H~~~V~~l~~sp--~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h---~~---~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
-+..+..+.|.- .++. .|+-+..+|.|.++... .......+.+- .- ...++.|++.+..++++..+|.+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~-~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRND-EDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeec-cceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence 445677777763 3355 66777888999999873 33322233321 11 245778999999999999999999
Q ss_pred EEECCCCcEEE--EecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCC-CCceEEE-EcCcCCceeEEEEeCC-CC
Q 007768 369 YWDTETGQVIR--TFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQE-YDQHLGAVNTITFVDS-NR 442 (590)
Q Consensus 369 vWd~~t~~~~~--~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-t~~~~~~-~~~h~~~V~~i~~~p~-~~ 442 (590)
+-+........ ..+.+. ..+...|.. ...+++.+|+.|+.+..||+| .++.+.. .+.|...|.+|.-+|. +.
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~--~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSD--KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEecceeeeeecccccccceeeeeeeccc--CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 66554444333 332222 233444444 444899999999999999999 3444443 5668899999998864 67
Q ss_pred EEEEEeCCCcEEEEECCC-CcEEEEeecCCCCceeEEEEcCCCC-EEEEEEcCCeEEEEEcCCc
Q 007768 443 RFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~g~-~la~~s~dg~I~iwd~~~~ 504 (590)
++++|+.|-.|++||.++ ++++..- ...+.|..+.++|.-. .|+.+++-+-.+|-+....
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eEEEeccccceeeeehhcccCccccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 999999999999999984 4444333 3558899999999632 3333444444666666543
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=1.5e-06 Score=88.25 Aligned_cols=176 Identities=15% Similarity=0.167 Sum_probs=136.6
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC-eEEEEECCCCcEEEEecCCC
Q 007768 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-NIKYWDTETGQVIRTFSTGK 385 (590)
Q Consensus 307 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg-~I~vWd~~t~~~~~~~~~~~ 385 (590)
|++-+|.+++..|. |...|.+. ..+-.+. .+|...|+-..+..++.-++.|..|| .|-|+|.++++..+....-.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~-~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRP-WDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECC-CCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc
Confidence 55556888888885 67777765 2333332 36778899999998888999999999 89999999998887777667
Q ss_pred cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCC
Q 007768 386 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIP 461 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg----~I~iwdl~~~ 461 (590)
.+..+...+++ ..++++.....|.++|+.++.....-+...+-|+.+.|+|++++|+-+--+| .|+++|+...
T Consensus 403 ~I~av~vs~dG---K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 403 NIEAVKVSPDG---KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ceEEEEEcCCC---cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 77788888765 5688888889999999999987665566778899999999999999876554 6999999887
Q ss_pred cEEEEeecCCCCceeEEEEcCCCCEEEEEE
Q 007768 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~la~~s 491 (590)
+....... ...=.+-+|.|++++|..-+
T Consensus 480 Kiy~vTT~--ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 480 KIYDVTTP--TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecCC--cccccCcccCCCCcEEEEEe
Confidence 76554432 22334568889999876654
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=2.8e-09 Score=109.01 Aligned_cols=156 Identities=16% Similarity=0.237 Sum_probs=110.3
Q ss_pred EEEEECCCeEEEEeCC-------CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee-cCCCC
Q 007768 402 LLAGMSDKKIVQWDMN-------TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMH 473 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~-------t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~-~~~~~ 473 (590)
+++++.|++|++|.++ +..+..++..|..+|.++.|..+.++++++ ||.|.+||.-.+..+..+. .+..+
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~ 827 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEG 827 (1034)
T ss_pred eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccC
Confidence 4444444444444443 233567788999999999999988887765 7889999976665554332 23334
Q ss_pred ceeEEEEcCC--CCEE-EEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 474 SMPSISLHPN--TNWL-AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 474 ~i~~i~~sp~--g~~l-a~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
.+..+..-++ ..++ +.++...+|+++|.+...-....+..........+.+++..+.|++++++-++|.|.+.|.++
T Consensus 828 a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 828 AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 4444444443 3334 444788999999999876665555554444456788999999999999999999999999999
Q ss_pred CeEEEEEec
Q 007768 551 CKVFRTLKC 559 (590)
Q Consensus 551 ~~~~~~l~~ 559 (590)
|+.+..++.
T Consensus 908 G~vINswrp 916 (1034)
T KOG4190|consen 908 GKVINSWRP 916 (1034)
T ss_pred CceeccCCc
Confidence 998876653
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.88 E-value=2.4e-06 Score=98.70 Aligned_cols=247 Identities=16% Similarity=0.232 Sum_probs=154.7
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecC--------------CCCeeE--------EEecc--------------
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV--------------NSGKCM--------RTYMG-------------- 341 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~--------------~~~~~~--------~~~~~-------------- 341 (590)
-..+|.|++|||| +.+|+..+.+++|.+-+.. ...+.+ ..|.|
T Consensus 119 vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPD-EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 4578999999999 8999999989888775430 000000 01100
Q ss_pred ----------CCCCeEEEEEccCCCEEEEEec---C---CeEEEEECCCCcEEEEec-CCCcceEEEEecCCCCCcEEEE
Q 007768 342 ----------HSKAVRDISFCNDGTKFLTASY---D---KNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 342 ----------h~~~V~~l~fspdg~~l~s~s~---D---g~I~vWd~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvs 404 (590)
+...-..|+|-.||.+||+.+. . +.|+||+-+ |....+-. .......++|.|.+ +++++
T Consensus 198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG---~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG---NLIAS 273 (928)
T ss_pred CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC---CEEEE
Confidence 2234567889999999998875 2 579999966 55443332 23334467777765 45655
Q ss_pred EEC---CCeEEEEeCC---CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEeecCCCCcee
Q 007768 405 GMS---DKKIVQWDMN---TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYISEPHMHSMP 476 (590)
Q Consensus 405 g~~---dg~I~iwD~~---t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~--~~~~~~~~~~~i~ 476 (590)
... ...|.+|.-+ .|+....+......|..+.|++++..|+....|. |.+|-..+-.- ...+..+....+.
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~ 352 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVN 352 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCC
Confidence 543 3456666533 2232222234556899999999999999987665 99998876532 2222223344556
Q ss_pred EEEEcCCC-CEEEEEEcCCeEEEEEcCCceeec---------c----------cccc-----------cCcccccceEEE
Q 007768 477 SISLHPNT-NWLAAQSLDNQILIYSTRERFQLN---------K----------KKRF-----------AGHIVAGYACQV 525 (590)
Q Consensus 477 ~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~~---------~----------~~~~-----------~~~~~~~~v~~v 525 (590)
.+.|+|.. ..|.+.+.+|.+..++..-..... . +..+ ..-.....|..+
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v 432 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV 432 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence 69999954 456666666766655432100000 0 0000 011124568899
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 526 NFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
+|++++..+++-..||.|.+|.+..
T Consensus 433 af~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 433 AFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEeCCCCeEEEEECCCCEEEEEecC
Confidence 9999998899999999999998643
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=1.6e-08 Score=106.96 Aligned_cols=259 Identities=18% Similarity=0.256 Sum_probs=167.8
Q ss_pred ccCCcceEEEecCCCCCeeEEEEcCCCC-CEEEEEeCCCcEEEEecCCC--CeeEEEeccCCCCeEEEEEccC-CCEEEE
Q 007768 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVVNS--GKCMRTYMGHSKAVRDISFCND-GTKFLT 360 (590)
Q Consensus 285 ~~~p~~~i~~l~gH~~~V~~l~~sp~~g-~~L~sgs~Dg~I~iWd~~~~--~~~~~~~~~h~~~V~~l~fspd-g~~l~s 360 (590)
.|-|++.++.+..- .|-.+.|+|... .+-++......-.+|++... ...-..+.+|+..|+++.|+|+ ...+++
T Consensus 55 p~~ppr~l~h~tpw--~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlat 132 (1081)
T KOG0309|consen 55 PFTPPRWLHHITPW--QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLAT 132 (1081)
T ss_pred CCCCceeeeccCcc--hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceee
Confidence 34555555544332 255666776522 23344444556678988432 2344567799999999999994 468899
Q ss_pred EecCCeEEEEECCCCc-EEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEE
Q 007768 361 ASYDKNIKYWDTETGQ-VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITF 437 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~-~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~ 437 (590)
++-|-.+..||+++-. .+..+.. ......+.|+.... -+++.+..+.|.+||++.| .++..+++|...|+.+.|
T Consensus 133 csvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p---~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 133 CSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP---NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred ccccccceeeeccCCCcceeeeecccccCceeeecccCc---chhhhccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence 9999999999998764 3333322 33445667766543 3666677788999999987 577888899999999998
Q ss_pred eCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEE--EEcCCeEEEEEcCCce-------ee
Q 007768 438 VDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA--QSLDNQILIYSTRERF-------QL 507 (590)
Q Consensus 438 ~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~--~s~dg~I~iwd~~~~~-------~~ 507 (590)
..- ...+++++.|++|++||................+|..-++-|-|.-.++ .-.++.+.+++.++.. ..
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~ 289 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN 289 (1081)
T ss_pred hhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCC
Confidence 753 3468899999999999997665444333456677777778776543222 2223344454443321 12
Q ss_pred cccccccCcccccceEEEEEcC----------CCCEEEEEcCCCcEEEEeCCC
Q 007768 508 NKKKRFAGHIVAGYACQVNFSP----------DGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~sp----------dg~~l~sgs~dg~I~iwd~~t 550 (590)
.....|.||. ..|....|-. ..-.|++=+.|..+++|-+.+
T Consensus 290 ~pVh~F~GH~--D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 290 TPVHTFVGHD--DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cceeeecCcc--hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3445677773 3333333322 122588999999999997754
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.7e-07 Score=98.99 Aligned_cols=244 Identities=12% Similarity=0.136 Sum_probs=157.7
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec-cCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
.-+++.||++.|.-+.|+.+ .+.|-++..+|.|.||-++...-+-..+. ...+.|.+++|+.+|..+...-.||.|.|
T Consensus 63 mNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 34688999999999999988 78899999999999999865433222222 23456899999999999999999999998
Q ss_pred EECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-------ce-E---EEEcCcCCceeEEEEe
Q 007768 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-------EI-T---QEYDQHLGAVNTITFV 438 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-------~~-~---~~~~~h~~~V~~i~~~ 438 (590)
=.++..+.-..--.+.....+.|+++. ..++.+..+|.+.+||.... .+ + ..+......|..+.|.
T Consensus 142 GsvdGNRIwgKeLkg~~l~hv~ws~D~---~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKGQLLAHVLWSEDL---EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EeeccceecchhcchheccceeecccH---HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 877655433222122222345566544 45777888899999998642 11 1 1112222346667775
Q ss_pred --------CCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC---------CeEEEEEc
Q 007768 439 --------DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---------NQILIYST 501 (590)
Q Consensus 439 --------p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d---------g~I~iwd~ 501 (590)
|+...|+++-..|.+.|..-.+......+. ..-.+..+.|+++|..|++++.+ +.|.+|..
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp 296 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP 296 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEecc
Confidence 577899999999998887554433333332 23578889999999999999865 35666654
Q ss_pred CCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 502 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
-. ..+..++ - ....|+.++|-..|-.++.+- |+.|++=+
T Consensus 297 ~G-~i~gtlk---v--pg~~It~lsWEg~gLriA~Av-dsfiyfan 335 (1189)
T KOG2041|consen 297 YG-HIVGTLK---V--PGSCITGLSWEGTGLRIAIAV-DSFIYFAN 335 (1189)
T ss_pred ch-hheEEEe---c--CCceeeeeEEcCCceEEEEEe-cceEEEEe
Confidence 22 1111111 1 134466677765554444332 34444433
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=2.2e-07 Score=99.11 Aligned_cols=244 Identities=18% Similarity=0.165 Sum_probs=170.7
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccC------------CCEEEEEecCC
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND------------GTKFLTASYDK 365 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspd------------g~~l~s~s~Dg 365 (590)
|...-.++.|+|. | +|+-|+. ..|.+-|. .+-+.+..+..|...|+.+.|.|- .-+|+++...|
T Consensus 14 ~~sN~~A~Dw~~~-G-LiAygsh-slV~VVDs-~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 14 SRSNRNAADWSPS-G-LIAYGSH-SLVSVVDS-RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred CcccccccccCcc-c-eEEEecC-ceEEEEeh-hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3344678889987 4 6666664 56888887 577889999999999999999872 12567777789
Q ss_pred eEEEEECCCCcEEEEecCC-CcceEEEEecCCCCC-cEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC-CCC
Q 007768 366 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNR 442 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~-~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p-~~~ 442 (590)
.|.+||...+..+..+..+ .....++|.+..+.. .+|++-.....|.+|+..+|+....+........|+.+.| +.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999998888777654 344567777766555 6788888889999999999999998887777788899988 445
Q ss_pred EEEEEeCCCcEEEEECCC------CcEEEEeecCCCC------------c-------------eeEEEEcCCCCEEEEEE
Q 007768 443 RFVTSSDDKSLRVWEFGI------PVVIKYISEPHMH------------S-------------MPSISLHPNTNWLAAQS 491 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~------~~~~~~~~~~~~~------------~-------------i~~i~~sp~g~~la~~s 491 (590)
.|..-+..|.+.+-+.-. +....++..+|.. . ...++|+|.-+.++...
T Consensus 170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~ 249 (1062)
T KOG1912|consen 170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT 249 (1062)
T ss_pred eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE
Confidence 666666667776666421 1122223222221 0 11256677766666666
Q ss_pred cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC--EEEEEcCCCcEEEEeCCC
Q 007768 492 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~t 550 (590)
....+.++|+.-...+.....-. +.+.-+.+-|+++ .|+++-.||.+.||-.+.
T Consensus 250 ~prellv~dle~~~~l~vvpier-----~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIER-----GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccceEEEcchhhceeEEEEecc-----CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 77889999987655544333322 2233466666654 699999999999997654
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.5e-07 Score=93.62 Aligned_cols=259 Identities=19% Similarity=0.203 Sum_probs=156.3
Q ss_pred EEEEecCCCCeeEEEeccCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEE
Q 007768 324 VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNIL 402 (590)
Q Consensus 324 I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (590)
|++.+. .+.+....+.+|...|++++|+|..+ ++..++.+..|+|.|+++..++..+..+..++.++|..+. .+++
T Consensus 175 v~~l~~-~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde--~h~I 251 (463)
T KOG1645|consen 175 VQKLES-HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE--RHVI 251 (463)
T ss_pred eEEecc-CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC--ccee
Confidence 455554 34444556778889999999999766 7889999999999999999999999999999999998876 4899
Q ss_pred EEEECCCeEEEEeCCCCc-eEEEEcC--cCCceeEEEEe------CCCCEEEEEeCCCcEEEEECCCC--cEEEEeecCC
Q 007768 403 LAGMSDKKIVQWDMNTKE-ITQEYDQ--HLGAVNTITFV------DSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPH 471 (590)
Q Consensus 403 vsg~~dg~I~iwD~~t~~-~~~~~~~--h~~~V~~i~~~------p~~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~ 471 (590)
++|..+|.|.+||++..+ .+..+.+ ...+|..|+.. +.+..|+..+.+ +..|++... ..........
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~ 329 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP 329 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence 999999999999998653 2222222 23344444433 334445544433 456665321 1111121223
Q ss_pred CCceeEEEEcCCCCEEEEEEcCC-------eEEE-EEcCCceeecccc-cccCccc-ccceE-EEEEcCCCCEEE-EEcC
Q 007768 472 MHSMPSISLHPNTNWLAAQSLDN-------QILI-YSTRERFQLNKKK-RFAGHIV-AGYAC-QVNFSPDGRFVM-SGDG 539 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~la~~s~dg-------~I~i-wd~~~~~~~~~~~-~~~~~~~-~~~v~-~v~~spdg~~l~-sgs~ 539 (590)
.+...++.+++..+.++.....+ .|.. .|..++..+...+ .+.|... ...-. .+.-.++.++|+ .|+.
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence 44556666776555555443320 1111 1112222221111 1101100 00000 122234555554 5556
Q ss_pred CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCC-CCCEEEEEeCCCcEEEc
Q 007768 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL-EQSKVATCGWDGLIKYW 589 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~-~~~~l~s~g~Dg~I~iW 589 (590)
...+.+||..++..++++... .+|.+++.... ++++|++-. |..++|+
T Consensus 410 tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred cceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence 778999999999999999754 67888766543 455676665 4466664
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.82 E-value=3.9e-08 Score=92.52 Aligned_cols=165 Identities=12% Similarity=0.128 Sum_probs=103.8
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec-----CCeE
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----DKNI 367 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-----Dg~I 367 (590)
+++.-|+++-.+-..+-. ++.++++..||.+.+++........+.+..-...--+.+....++.+.++.. -+..
T Consensus 83 ~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 344455554444444433 6789999999999999984422222222221222223344445666655432 2344
Q ss_pred EEEECCCCcEEEEe-cCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc-eEEEEcCcCCceeEEEEeCC-CCEE
Q 007768 368 KYWDTETGQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDS-NRRF 444 (590)
Q Consensus 368 ~vWd~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~-~~~~~~~h~~~V~~i~~~p~-~~~l 444 (590)
+.|+++..+.+..- .......+++-+ +..++++++|+.||.+-+||.+... ++..+..|..+|+.+.|+|. +..|
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~h--p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSH--PAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeecccccccccccccccccchhhhCC--cccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 55555433222111 112223344444 4556899999999999999999874 44556789999999999985 5689
Q ss_pred EEEeCCCcEEEEECCC
Q 007768 445 VTSSDDKSLRVWEFGI 460 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~ 460 (590)
++++.||.+-.||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999764
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=6.5e-06 Score=81.58 Aligned_cols=232 Identities=13% Similarity=0.135 Sum_probs=157.3
Q ss_pred eEEEEEcc-CCCEEEEEecCC-eEEEEECCCCcEEEEecCCCcce---EEEEecCCCCCcEEEEEE-----CCCeEEEEe
Q 007768 346 VRDISFCN-DGTKFLTASYDK-NIKYWDTETGQVIRTFSTGKIPY---VVKLNPDDDKQNILLAGM-----SDKKIVQWD 415 (590)
Q Consensus 346 V~~l~fsp-dg~~l~s~s~Dg-~I~vWd~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~lvsg~-----~dg~I~iwD 415 (590)
...++.+| .+..++.+-.-| ...+||..+++....+.....-. -..|++++ .+|++.- ..|.|-+||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG---~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG---RLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC---CEEEEeccccCCCcEEEEEEE
Confidence 45677888 455566665554 57899999999988776543322 45566654 4566653 358999999
Q ss_pred CC-CCceEEEEcCcCCceeEEEEeCCCCEEEEEe------------------CCCcEEEEECCCCcEEEEeec---CCCC
Q 007768 416 MN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSS------------------DDKSLRVWEFGIPVVIKYISE---PHMH 473 (590)
Q Consensus 416 ~~-t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s------------------~Dg~I~iwdl~~~~~~~~~~~---~~~~ 473 (590)
.. +.+.+.++..|.-.-..+.+.|+++.|+++- .+-+|.+.|..++..+..... .+..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 99 6688889988887888899999998887762 234566677777777666432 3666
Q ss_pred ceeEEEEcCCCCEEEEEEcCCe-------EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEE
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQ-------ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWF 545 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~-------I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~i 545 (590)
+|..+++.++|..++.+-..|. |.+++............-.-....+|+-+|+++++|.++++.+ ..|.+.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 8999999999887766554432 4444433321111111111123367888999999999886666 6778999
Q ss_pred EeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 546 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 546 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
||..+++++......+ +..++-.+ ++ +++|.|.-.
T Consensus 244 ~d~~tg~~~~~~~l~D--~cGva~~~-~~-f~~ssG~G~ 278 (305)
T PF07433_consen 244 WDAATGRLLGSVPLPD--ACGVAPTD-DG-FLVSSGQGQ 278 (305)
T ss_pred EECCCCCEeeccccCc--eeeeeecC-Cc-eEEeCCCcc
Confidence 9999999988776543 56676665 33 777766543
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=9.7e-08 Score=95.14 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=116.9
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEECCCC----cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce
Q 007768 346 VRDISFCNDGTKFLTASYDKNIKYWDTETG----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 346 V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~ 421 (590)
+..+..++.+++|+++..+....++++... +++..+........+.+........+....+....+.+|....+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 334456667788888777777666665433 3444455556666666666554322222233344555555554443
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
. .+-+|...+..++|+||+++++++..|..|++-.+.....+..+..+|..-|..+++-++. .|++++.|++|++||+
T Consensus 145 ~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 E-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDI 222 (390)
T ss_pred c-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEec
Confidence 3 3448999999999999999999999999999999988888888888899999999998654 5899999999999999
Q ss_pred CCceeec
Q 007768 502 RERFQLN 508 (590)
Q Consensus 502 ~~~~~~~ 508 (590)
.++..+.
T Consensus 223 ~sgk~L~ 229 (390)
T KOG3914|consen 223 TSGKLLD 229 (390)
T ss_pred ccCCccc
Confidence 9887663
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=4.2e-06 Score=80.57 Aligned_cols=238 Identities=12% Similarity=0.130 Sum_probs=132.8
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEecCCCCe-eEEE---eccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE
Q 007768 305 IRFFPKYGHLILSAGMDTKVKIWDVVNSGK-CMRT---YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 305 l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~---~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
++.+++ |++||.- .|..|.|=....+-. ++.. -+...-.-+.++|+||+.+||.+...|+|+++|+.... +..
T Consensus 3 ~~~~~~-Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSD-GKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCC-CcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 455666 7776654 466677765532221 2222 22233456789999999999999999999999997543 333
Q ss_pred ecCCC--------cceEEEEecCCCC---CcEEEEEECCCeEEEEeCCCC-----ceEEEE--c-CcCCceeEEEEeCCC
Q 007768 381 FSTGK--------IPYVVKLNPDDDK---QNILLAGMSDKKIVQWDMNTK-----EITQEY--D-QHLGAVNTITFVDSN 441 (590)
Q Consensus 381 ~~~~~--------~~~~~~~~~~~~~---~~~lvsg~~dg~I~iwD~~t~-----~~~~~~--~-~h~~~V~~i~~~p~~ 441 (590)
+.... .+..+.|...... ...|++-...|.++-|-+..+ +....+ . .+...|+++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 32211 1122233322211 235777777888877765322 222232 2 346789999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCC-EE-EEEEcCCe------EEEEEcCCceeecccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WL-AAQSLDNQ------ILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~-~l-a~~s~dg~------I~iwd~~~~~~~~~~~~~ 513 (590)
+.|++|+.... +... .......+++-.+-.+.. +. ++...++. ..+|.+-+. ..+
T Consensus 160 ~LLlVgG~~~~------~~~~-----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~------~~f 222 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM-----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF------KFF 222 (282)
T ss_pred CEEEEeccCCC------CCcc-----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce------eee
Confidence 98888765332 0000 001111122211111111 11 11111111 112222111 011
Q ss_pred cC-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCC
Q 007768 514 AG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 514 ~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~ 562 (590)
.. ......|..+..||||.+|++...+|.|.+|++.+.++...+..+..
T Consensus 223 s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 223 SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 00 11245677899999999999999999999999999988888775544
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.77 E-value=5.2e-06 Score=81.26 Aligned_cols=216 Identities=16% Similarity=0.115 Sum_probs=136.4
Q ss_pred CCeEEEEECCCCcEEEEecCCC--cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 364 DKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
+|.|..||..+|+.+....... ..........+ ..+++++.++.|+.||..+|+.+..+.. .+.+...... .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG---GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET---TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC---CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc
Confidence 6899999999999999887633 22221122122 4577778999999999999999888765 3322222222 35
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEe-ecCC--CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYI-SEPH--MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~-~~~~--~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
..+++++.++.|+.+|..++..+... .... ......+.....+..++++..++.|..+|+.++..+...........
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 56777778889999999999887774 2211 11112222333488889999899999999998877654433111100
Q ss_pred -----ccc-eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 519 -----AGY-ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 519 -----~~~-v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
... ...+.+. ++ .++.++.+|.+..+|+.+++.+.... ...+..+ ... .+..|+.++.++.|.+||
T Consensus 157 ~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSV-DGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EEC-CCTEEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-cee-eCCEEEEEeCCCEEEEEE
Confidence 001 1223332 44 77777778864444999999775444 2223332 233 445777777899999886
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.3e-07 Score=98.58 Aligned_cols=186 Identities=15% Similarity=0.194 Sum_probs=141.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
...++|++++ +++|+-|+.+|.|++.+. .+.+ .+...|+.. .-+|.+++|||.||.|.|-.+-+.+..
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~--~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTC--QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEec--CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 3567888886 679999999999999997 4444 555566654 558999999999999999999999999
Q ss_pred EEecCCCcceEEEEecC--CCCCcEEEEEECCCeEEEEeCCC--CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007768 379 RTFSTGKIPYVVKLNPD--DDKQNILLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~--~~~~~~lvsg~~dg~I~iwD~~t--~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
..+.....+.++++.|+ ......+++|+.-| +.++.-+= .+....+..-.|+|.++.|. |++++-++++| |+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 99989999999999998 44456799999888 77765331 11111355567899999995 77888888877 89
Q ss_pred EEECCCCcEEEEeecCCCCc-----eeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 455 VWEFGIPVVIKYISEPHMHS-----MPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~-----i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
+||....+.+..+..++... ...+.|.++.++ +. +...+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VI-GWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EE-ecCCeEEEEEEe
Confidence 99999988888776655322 345677665543 33 556678998887
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=4.2e-09 Score=113.12 Aligned_cols=263 Identities=19% Similarity=0.225 Sum_probs=180.6
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC--
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-- 365 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg-- 365 (590)
..+..++|+.|+...+|++|+-. .+.|+.|+..|.|+++++ .+|.....+.+|..+|+.+.=+.+|..+++.+.-.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv-~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNV-SSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hcccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEc-cCccccccccccccccccccccCCcceeeeeccccCc
Confidence 44677888999999999999998 889999999999999999 68888889999999999999999998877665433
Q ss_pred eEEEEECCC-CcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc----CcCCceeEEEEeCC
Q 007768 366 NIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD----QHLGAVNTITFVDS 440 (590)
Q Consensus 366 ~I~vWd~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~----~h~~~V~~i~~~p~ 440 (590)
-..+|++.+ +...++|... .++.|+... ..-+.|+......+||+.++..+.++- +....-++..|+|.
T Consensus 1168 lsaLW~~~s~~~~~Hsf~ed---~~vkFsn~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDED---KAVKFSNSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred hHHHhccccccCcccccccc---ceeehhhhH---HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 477999853 4455555433 244454331 334556666788999999997776632 12223478899998
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc
Q 007768 441 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
...++- || .+||++.+..+..+..-. --..-.|||+|.-++..+ -|||+++...+.... .-
T Consensus 1242 D~LIln---dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP-------~L 1302 (1516)
T KOG1832|consen 1242 DTLILN---DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP-------SL 1302 (1516)
T ss_pred cceEee---Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hhhhhHHHHHHhcCc-------cc
Confidence 877663 45 579999987777664311 122346899999988866 589999855443332 23
Q ss_pred ceEEEEEcCCCCEEEEEcC------C-----------CcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEE
Q 007768 521 YACQVNFSPDGRFVMSGDG------E-----------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~------d-----------g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
.-|.+.|+..|..++..-. | ...+-+|....+.+.++.+. ..|..++-.|.+ .+|..
T Consensus 1303 dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct~~~D-~~l~v 1376 (1516)
T KOG1832|consen 1303 DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLCTEPTD-SFLGV 1376 (1516)
T ss_pred cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhhcCCcc-ceEEE
Confidence 3457889888887654320 0 12334444455556666543 346666666633 34443
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=2.2e-06 Score=90.92 Aligned_cols=258 Identities=10% Similarity=0.083 Sum_probs=158.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC----------CeE-EEEEccCCCEEEEEecCCeEEEEECCCCcEEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK----------AVR-DISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~----------~V~-~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..+++++.+|.|.-+|. .+++.+........ .+. .+.. .+..++.++.+|.|..+|.++|+.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 557777888888888888 56776665432210 000 0111 355777888899999999999999988
Q ss_pred ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCce-----eEEEEeCCCCEEEEEeCCCcEEE
Q 007768 381 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V-----~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..........-... ...++++..++.|+.+|..+|+.+..+......+ .+.... +..++.++.++.+..
T Consensus 146 ~~~~~~~~ssP~v~----~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a 219 (394)
T PRK11138 146 TKVAGEALSRPVVS----DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSA 219 (394)
T ss_pred ccCCCceecCCEEE----CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEE
Confidence 87654332211111 1357778889999999999999988875431111 111111 335677778899999
Q ss_pred EECCCCcEEEEeecCCC---Cc---eeEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007768 456 WEFGIPVVIKYISEPHM---HS---MPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~~---~~---i~~i~~sp--~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
+|..++..+-....... .. ...+..+| .+..+++++.+|.+..+|..++..+-... +.. ...+.
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~~------~~~~~- 291 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YGS------VNDFA- 291 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CCC------ccCcE-
Confidence 99887765443321110 00 11111122 25567778889999999998876553322 111 01111
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC-CcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+..|+.++.+|.|..+|..+|+.+.....-. ....+.... +.+|+.++.||.|.+.|
T Consensus 292 -~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 292 -VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred -EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEeCCCEEEEEE
Confidence 246678888899999999999998876543211 112222222 24677778888877654
No 299
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=3.4e-08 Score=96.32 Aligned_cols=165 Identities=12% Similarity=0.157 Sum_probs=130.3
Q ss_pred EEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCCceeE
Q 007768 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPS 477 (590)
Q Consensus 403 vsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~~~~~i~~ 477 (590)
++.+.+-.|.+-|+.+|.. +.+. ..+.|.++.|...++.+..|+..|.|..+|++.. .+...+ -|...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhh
Confidence 4555677788889888742 3333 5678999999988999999999999999999764 333344 47888999
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEE
Q 007768 478 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 556 (590)
Q Consensus 478 i~~sp-~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~ 556 (590)
+..-. ++.+|++.+.+|.|.+||++..++-.....+.||.+...-.-+-+.+....|++++.|...+||.++++.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 88777 78899999999999999998766655567888997766555566778888999999999999999999999998
Q ss_pred EecCC----CcEEEEEEcC
Q 007768 557 LKCHE----GVCIGCEWHP 571 (590)
Q Consensus 557 l~~h~----~~V~~v~~sp 571 (590)
++... ..|.+++|..
T Consensus 384 ipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cCCCCccccccccceehhc
Confidence 87443 2456666654
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.70 E-value=2.5e-07 Score=100.41 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=139.9
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCcee
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 433 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~ 433 (590)
++..++.|+....+..+|+.+.+..+........ +..+..+ ..++.+|...|+|.+-|.++.+.+.++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEec---CcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 4567888888889999999999888877655533 3333332 26899999999999999999999999999999998
Q ss_pred EEEEeCCCCEEEEEeC---------CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCC
Q 007768 434 TITFVDSNRRFVTSSD---------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~---------Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~ 503 (590)
.+.. .|+.|++++. |..|+|||++..+.+..+.- .....-+.|+|. ...+++++..|+..+-|..+
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~--~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF--PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc--ccCchhhhhcccccceEEEEecccceeeccccc
Confidence 8777 5889998874 56789999998776655532 222355678886 45788889999999998433
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 504 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
.... ....+.-+.....+..+++|+.|+.|+.|..+|.|.+|-
T Consensus 298 lsNP-~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNP-PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCC-ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2111 111222233355688999999999999999999999997
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=6e-06 Score=92.78 Aligned_cols=271 Identities=11% Similarity=0.129 Sum_probs=160.3
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
..|.++.|.-+ .+-++.+...|.|.+-|.. ...+.....-...|.+++|+||+..++..+..++|.+-+ .+..++.
T Consensus 69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~e--t~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLAD-TNSICVITALGDIILVDPE--TLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA 144 (1265)
T ss_pred cceEEEEEecc-cceEEEEecCCcEEEEccc--ccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence 57999999998 7888888999999999872 223333334567899999999999999998877776543 3333322
Q ss_pred EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc-----eEE-----EEcCcCCceeEEEEeCCCCEEEEE--
Q 007768 380 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-----ITQ-----EYDQHLGAVNTITFVDSNRRFVTS-- 447 (590)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~-----~~~-----~~~~h~~~V~~i~~~p~~~~l~s~-- 447 (590)
..... .+.....-++.++....=..+.-..|+ .+. ........=++|+|-.+|.+|++.
T Consensus 145 E~~L~---------~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 145 EKPLD---------ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred ccccc---------cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 22110 000011112333222211122211111 000 000112223579999999999883
Q ss_pred ---eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE---cCCeEEEEEcCCceeecccccccCcccccc
Q 007768 448 ---SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 448 ---s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
...+.|+|||-. ..+.....+..+--.+++|-|.|.++++.. .|+.|.+|.-+.-..-. ..+.-......
T Consensus 216 ~~~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ 291 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE--FVLPFPLDEKE 291 (1265)
T ss_pred eccCCceeEEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc--cccCCcccccc
Confidence 233789999976 334444445566677899999999988864 45679998765422111 11111112333
Q ss_pred eEEEEEcCCCCEEEE---EcCCCcEEEEeCCCCe--EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 522 ACQVNFSPDGRFVMS---GDGEGKCWFWDWKSCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 522 v~~v~~spdg~~l~s---gs~dg~I~iwd~~t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+..++|+.++..|++ ......|++|-+.+.. +.+.+....... +.|+|.....|..-..+|.+.++
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEE
Confidence 778999999999987 4445559999887643 233333333222 77887544455554456655443
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=8.2e-08 Score=90.39 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=101.3
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE-EeecCCCCceeEEEEcCCCCEEEEEE-----cCCeEEEEE
Q 007768 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK-YISEPHMHSMPSISLHPNTNWLAAQS-----LDNQILIYS 500 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~-~~~~~~~~~i~~i~~sp~g~~la~~s-----~dg~I~iwd 500 (590)
.|.++-.+-..+-.++.++++..||.+.+++.+.-..+. .+...+... .+.++...++++.++. .-+..++|+
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeec
Confidence 344443333444456789999999999999987632221 111112221 2223333444544432 123455666
Q ss_pred cCCceeecccccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCCCeE-EEEEecCCCcEEEEEEcCCCCCEEE
Q 007768 501 TRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
++....+.. .+.....+.+++-+|. .+++++|+.||.+-+||++.... ...+++|..+|..+-|||.++..|+
T Consensus 166 ~~p~~t~~~-----~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 166 LDPIKTLIP-----SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred ccccccccc-----cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 543322211 1111223677888885 45677888999999999998754 4566899999999999999999999
Q ss_pred EEeCCCcEEEcC
Q 007768 579 TCGWDGLIKYWD 590 (590)
Q Consensus 579 s~g~Dg~I~iWD 590 (590)
+|+.||.+..||
T Consensus 241 t~sedGslw~wd 252 (319)
T KOG4714|consen 241 TCSEDGSLWHWD 252 (319)
T ss_pred EecCCCcEEEEc
Confidence 999999999997
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.65 E-value=3.7e-07 Score=91.08 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=106.5
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE-EEEee-cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007768 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-IKYIS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~-~~~~~-~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
.+..+..++.+++++++..++...++++..... .+.+. ......-+++.+..+...+.++..-|.++-+|+-.... .
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-G 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-c
Confidence 344566778888999998888887888755432 11111 01222334455555555555555555555544433211 2
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe-cCCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
.....-|| -..+..++|+||+++|++++.|..|++-.......+..|- +|...|..++.-+ +..|+++|.|++|+
T Consensus 143 ~~~~~lGh--vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 143 RCEPILGH--VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLR 218 (390)
T ss_pred Ccchhhhh--hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEE
Confidence 23345566 4668899999999999999999999999888777776664 6999999999987 34689999999999
Q ss_pred EcC
Q 007768 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
+||
T Consensus 219 ~Wd 221 (390)
T KOG3914|consen 219 LWD 221 (390)
T ss_pred EEe
Confidence 997
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=2.2e-05 Score=83.56 Aligned_cols=200 Identities=9% Similarity=0.069 Sum_probs=120.2
Q ss_pred CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEE-EEEC--CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 365 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL-AGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lv-sg~~--dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
..|.+-|..... .+.+..+.....-.|+|++. .+++ +... ...|+++|+.+++...... ..+.+....|+|+|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~--~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQ--TAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCCCeEeEEECCCCC--cEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 355565655443 33333333445566776653 3333 3332 4679999999887655443 45556678899999
Q ss_pred CEEEEEe-C--CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-C--eEEEEEcCCceeecccccccC
Q 007768 442 RRFVTSS-D--DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 442 ~~l~s~s-~--Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-g--~I~iwd~~~~~~~~~~~~~~~ 515 (590)
+.++... . +..|+++|+..+.. ..+.. .........|+|+|+.|+..+.. + .|+++++.++..... .+.+
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl--t~~g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTL-TQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV--VFHG 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcE-EEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--ccCC
Confidence 8776543 2 34688888877654 33432 22223456899999988777643 2 688888876543221 1112
Q ss_pred cccccceEEEEEcCCCCEEEEEcCC---------CcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEe
Q 007768 516 HIVAGYACQVNFSPDGRFVMSGDGE---------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~~l~sgs~d---------g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
. . ...|||||++|+..... ..|++.|+.++... .+... +......|+|+ +..|+..+
T Consensus 321 ~----~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPD-G~~I~f~~ 386 (419)
T PRK04043 321 K----N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSD-GGSIMFIK 386 (419)
T ss_pred C----c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCC-CCEEEEEE
Confidence 1 1 24899999998766543 36888898888653 33322 23346889995 54444433
No 305
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.64 E-value=3.4e-05 Score=78.60 Aligned_cols=252 Identities=12% Similarity=0.114 Sum_probs=163.4
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE-ec--C---CCc
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FS--T---GKI 386 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~-~~--~---~~~ 386 (590)
+..+....+|.=.||.+.-+++-++...... .-.+=..+.||+.++-. ..|.|.++|.++...... +. . ...
T Consensus 237 RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~ 314 (668)
T COG4946 237 RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQ 314 (668)
T ss_pred eEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcccccccc
Confidence 4444556677666676644555444322111 11222345588877654 458899999887654321 11 0 011
Q ss_pred ce-------EEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC-cEEEEEC
Q 007768 387 PY-------VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVWEF 458 (590)
Q Consensus 387 ~~-------~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg-~I~iwdl 458 (590)
.. .-.+++. .+.+++..+ .|+..+.+...+-.++. +|.+.|.-..+.-+++-++.|..|| .|-|+|.
T Consensus 315 ~k~~~pskyledfa~~--~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~ 389 (668)
T COG4946 315 PKFVNPSKYLEDFAVV--NGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK 389 (668)
T ss_pred ccccCHHHhhhhhccC--CCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEec
Confidence 11 0112222 234555554 46777777665554443 5677788888888888999999999 8999999
Q ss_pred CCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 459 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
+.....+.. +.-+.|.++..+|+|++++++.....|.++|+.++.....- ....+.|+.++|||++++||-+-
T Consensus 390 ~~~e~kr~e--~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-----kS~~~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 390 DGGEVKRIE--KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-----KSEYGLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred CCceEEEee--CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-----ccccceeEEEEEcCCceeEEEec
Confidence 887654433 46778999999999999999998899999999887543221 22256788999999999999887
Q ss_pred CCC----cEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEE
Q 007768 539 GEG----KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 539 ~dg----~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
-+| .|+++|+..++...... ..+.=.+-+|.| ++++|.--
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfL 506 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFL 506 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEE
Confidence 665 58999999988765443 222224567777 55555433
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.61 E-value=8.5e-06 Score=77.37 Aligned_cols=234 Identities=8% Similarity=-0.037 Sum_probs=144.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYV 389 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~ 389 (590)
..+|+.||.-|...+|........+.....|...|.-+.=.. ....+..++.|.++++.+++-+......... -....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 468999999999999998434444444444544443222111 2235677888899998888755443333222 12334
Q ss_pred EEEecCCCCCcEEEEEECCCeEEEEeCCCC-c-eEE-EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE-
Q 007768 390 VKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E-ITQ-EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK- 465 (590)
Q Consensus 390 ~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~-~~~-~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~- 465 (590)
+.+++++ .++++.+....|..|.+... + .+. ........-.+..|+.....|+++..||++.|||++......
T Consensus 164 ~~~snd~---~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 164 LHYSNDP---SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eEEcCCC---ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 4555443 57788888888999988643 2 233 223344556788999999999999999999999998654322
Q ss_pred ---EeecCCCCceeEEEEcCCCC--EEEEEEcCCeEEEEEcCCceeecccccccCc---ccccceEEEEEcCCCCEEEEE
Q 007768 466 ---YISEPHMHSMPSISLHPNTN--WLAAQSLDNQILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSG 537 (590)
Q Consensus 466 ---~~~~~~~~~i~~i~~sp~g~--~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~v~~spdg~~l~sg 537 (590)
.....|.+.+..+.|++.|. +|+..-.-+.+.+.|+++......+...... .....+...+|+.++.-+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 22235788999999998663 4555455578999999887654433322211 011224455666666655555
Q ss_pred cCCCcEEEEeCC
Q 007768 538 DGEGKCWFWDWK 549 (590)
Q Consensus 538 s~dg~I~iwd~~ 549 (590)
+.+ .+.=|++.
T Consensus 321 ~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 321 NEL-QGAEYNIL 331 (344)
T ss_pred cch-hhheeecc
Confidence 433 33444443
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=0.00012 Score=72.14 Aligned_cols=217 Identities=17% Similarity=0.213 Sum_probs=135.8
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEc-cCCCEEEEEecCCeEEEEECCCCcEEEEec
Q 007768 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFC-NDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 304 ~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs-pdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
++.|.+..+.++++--..+.|..|+. ..+.. ..+.... ...+++. +++ .|+.+.. +.+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~-~~~~~-~~~~~~~--~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDP-DTGEV-EVIDLPG--PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-TTTEE-EEEESSS--EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEEC-CCCeE-EEEecCC--CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEee
Confidence 56788854788888878999999998 34433 3232222 7777887 564 5555555 445566999986654443
Q ss_pred C--C--Cc--ceEEEEecCCCCCcEEEEEECC--------CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE-EE
Q 007768 383 T--G--KI--PYVVKLNPDDDKQNILLAGMSD--------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV-TS 447 (590)
Q Consensus 383 ~--~--~~--~~~~~~~~~~~~~~~lvsg~~d--------g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~-s~ 447 (590)
. . .. +..+.+.+++ ++.++.... |.|+.++.. ++..... ......+.|+|+|+++.|+ +-
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G---~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDG---NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCCC---CEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecc
Confidence 3 1 22 2345555433 455555543 568888887 5543333 3456679999999998775 55
Q ss_pred eCCCcEEEEECCCCcE----EEEeecCCC--CceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 448 SDDKSLRVWEFGIPVV----IKYISEPHM--HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~----~~~~~~~~~--~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
+..+.|..+++..... ...+..... .....+++..+|++.++....+.|.+++.. +..+..+.. . ...
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-p----~~~ 226 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL-P----VPR 226 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE--S----SSS
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC-C----CCC
Confidence 6778899999853321 122222122 247789999999988888889999999987 444433322 1 125
Q ss_pred eEEEEE-cCCCCEEEEE
Q 007768 522 ACQVNF-SPDGRFVMSG 537 (590)
Q Consensus 522 v~~v~~-spdg~~l~sg 537 (590)
+++++| .++.+.|+..
T Consensus 227 ~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEESTTSSEEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 677899 4666665543
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.1e-05 Score=83.61 Aligned_cols=259 Identities=15% Similarity=0.191 Sum_probs=147.6
Q ss_pred CeeEEEEcCCCCCEEEEEeC-----------CCcEEEEecCCCCeeEEEeccC--CCCe-EEEEEccCCCEEEEEecCCe
Q 007768 301 GVSAIRFFPKYGHLILSAGM-----------DTKVKIWDVVNSGKCMRTYMGH--SKAV-RDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~-----------Dg~I~iWd~~~~~~~~~~~~~h--~~~V-~~l~fspdg~~l~s~s~Dg~ 366 (590)
.|.-+.|||. .++|+|-+. ...++|||+ .+|...+.+... ...+ .-+.||.|++++|.-.. ..
T Consensus 251 ~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~IWDI-~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLIIWDI-ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCc-cceEEEecCCccccCcccCCCceEEEEEc-cccchhcceeccCCCccccceEEeccCCceeEEecc-ce
Confidence 4889999999 899998764 256899999 688887777652 2222 34679999998887665 56
Q ss_pred EEEEECCCCcEEEE----------ecCCCc------------------------------------ceEEEEecCCCCCc
Q 007768 367 IKYWDTETGQVIRT----------FSTGKI------------------------------------PYVVKLNPDDDKQN 400 (590)
Q Consensus 367 I~vWd~~t~~~~~~----------~~~~~~------------------------------------~~~~~~~~~~~~~~ 400 (590)
|.|++..+..++-. |.-.-. +.-+.+++... +.
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~-gd 406 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKS-GD 406 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccC-Cc
Confidence 88887654322110 000000 00111111111 11
Q ss_pred EEEEE----------ECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC---CCcEEEEECC-CCcEEEE
Q 007768 401 ILLAG----------MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFG-IPVVIKY 466 (590)
Q Consensus 401 ~lvsg----------~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~---Dg~I~iwdl~-~~~~~~~ 466 (590)
+|+.- +.-..+-|+.++...+.-..-.-...|...+|-|.|..|++.+. ..++.+|.+. +......
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 12110 00012223333332211111123456788899999998887654 3578888876 3332222
Q ss_pred eecCCCCceeEEEEcCCCCEEEEEE---cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE
Q 007768 467 ISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 467 ~~~~~~~~i~~i~~sp~g~~la~~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
+..-.....+.+.|+|.|++++++. ..|.+.++|+...... ......| ...+.+.|.|.|+|++++++-++.
T Consensus 487 Vk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k--~~~~~eh---~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 487 VKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK--DTASPEH---FAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred hhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh--hccCccc---cccccceECCCCCEEEEeeehhhh
Confidence 2222345678899999999988764 5688999998641111 1112222 334568999999999999875433
Q ss_pred EEEeCCCCeEEEEEecCC------CcEEEEEEcC
Q 007768 544 WFWDWKSCKVFRTLKCHE------GVCIGCEWHP 571 (590)
Q Consensus 544 ~iwd~~t~~~~~~l~~h~------~~V~~v~~sp 571 (590)
. +.+|-.+.++++.- +....+.|-|
T Consensus 562 k---~d~GYri~tfqGrll~~~~i~~f~qF~WRP 592 (698)
T KOG2314|consen 562 K---VDNGYRIFTFQGRLLKEDIIDRFKQFLWRP 592 (698)
T ss_pred c---cccceEEEEeecHHHHHHHHHHHHhhccCC
Confidence 2 24455555555421 1234466766
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.55 E-value=2.3e-07 Score=63.05 Aligned_cols=38 Identities=29% Similarity=0.769 Sum_probs=36.4
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd 328 (590)
++++++.+|.+.|++|+|+|+ +.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 578999999999999999999 99999999999999997
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.53 E-value=0.00015 Score=72.13 Aligned_cols=231 Identities=16% Similarity=0.208 Sum_probs=149.1
Q ss_pred eEEEEcCCCCCEEEEEeCCCc-EEEEecCCCCeeEEEeccCCCCe--EEEEEccCCCEEEEEec-----CCeEEEEECC-
Q 007768 303 SAIRFFPKYGHLILSAGMDTK-VKIWDVVNSGKCMRTYMGHSKAV--RDISFCNDGTKFLTASY-----DKNIKYWDTE- 373 (590)
Q Consensus 303 ~~l~~sp~~g~~L~sgs~Dg~-I~iWd~~~~~~~~~~~~~h~~~V--~~l~fspdg~~l~s~s~-----Dg~I~vWd~~- 373 (590)
..++.+|..+..++.+-.-|+ ..+||. .++.....+....+.- =.-+|++||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~-~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDC-RTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEc-CCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 356778865777888877765 567888 5666665554322221 13579999999998744 4899999999
Q ss_pred CCcEEEEecCCC-cceEEEEecCCCCCcEEEEE-----------------ECCCeEEEEeCCCCceEEE--E--cCcCCc
Q 007768 374 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAG-----------------MSDKKIVQWDMNTKEITQE--Y--DQHLGA 431 (590)
Q Consensus 374 t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg-----------------~~dg~I~iwD~~t~~~~~~--~--~~h~~~ 431 (590)
+.+.+..+..+. .+.-+.+.+++. .++++- ..+-.|...|..+|+++.. + ..|.-.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~--tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGE--TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCC--EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 667777776543 344566666552 233321 2345677788889988776 4 347788
Q ss_pred eeEEEEeCCCCEEEEEeCCC-------cEEEEECCCCcEEEEee------cCCCCceeEEEEcCCCCEEEEEE-cCCeEE
Q 007768 432 VNTITFVDSNRRFVTSSDDK-------SLRVWEFGIPVVIKYIS------EPHMHSMPSISLHPNTNWLAAQS-LDNQIL 497 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~Dg-------~I~iwdl~~~~~~~~~~------~~~~~~i~~i~~sp~g~~la~~s-~dg~I~ 497 (590)
|..+++.++|..++..-..| -|.+++.... +..+. ....+.+-+|++++++.++++.+ ..+.+.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 99999999987666554433 2444443332 22221 12346788999999998776555 568899
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
+||..++..+.... -.-+|.++..+++ ++++. ..|.+....
T Consensus 243 ~~d~~tg~~~~~~~-------l~D~cGva~~~~~-f~~ss-G~G~~~~~~ 283 (305)
T PF07433_consen 243 VWDAATGRLLGSVP-------LPDACGVAPTDDG-FLVSS-GQGQLIRLS 283 (305)
T ss_pred EEECCCCCEeeccc-------cCceeeeeecCCc-eEEeC-CCccEEEcc
Confidence 99998876543322 2446677777777 55444 445544333
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.50 E-value=2.3e-06 Score=93.13 Aligned_cols=178 Identities=16% Similarity=0.221 Sum_probs=133.1
Q ss_pred cEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEE
Q 007768 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~ 479 (590)
..++.|+--..+..+|+++.+..+...-..+.|.-|.. +++.+.+|...|+|.+-|.++.+.+..+. .|.+.|..+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfD 224 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFD 224 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-ccccceeeee
Confidence 45888888888999999999887776555545555554 57899999999999999999999998886 4888877665
Q ss_pred EcCCCCEEEEEEc---------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEe--
Q 007768 480 LHPNTNWLAAQSL---------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWD-- 547 (590)
Q Consensus 480 ~sp~g~~la~~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd-- 547 (590)
. .|+.|++|+. |..|+|||++....+.++....+.. -+.|.|. ...+++.+..|...+-|
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~------flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ------FLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch------hhhhcccccceEEEEecccceeecccc
Confidence 5 6888988874 4568999999876665555443331 2567774 34678888899999999
Q ss_pred -CCCCeE-EEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 548 -WKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 548 -~~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+.+... +.-+......+.++.+++ ++..|+.|..+|.|.+|
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLW 339 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeee
Confidence 333211 222222334589999999 78899999999999999
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.49 E-value=4.3e-07 Score=61.72 Aligned_cols=39 Identities=41% Similarity=0.867 Sum_probs=36.9
Q ss_pred CeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=5e-07 Score=88.36 Aligned_cols=150 Identities=15% Similarity=0.247 Sum_probs=113.2
Q ss_pred EEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC-----cEEEEecCCCcceEE
Q 007768 316 LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-----QVIRTFSTGKIPYVV 390 (590)
Q Consensus 316 ~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-----~~~~~~~~~~~~~~~ 390 (590)
++.+.+-.|-|-++ .++ ....|. ..+.|.++.|...+++++.|+.+|.|.+.|++.+ .+...+..+....++
T Consensus 228 fs~G~sqqv~L~nv-etg-~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNV-ETG-HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEe-ecc-cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 55566677888887 333 223333 5677999999998999999999999999999864 455666666666655
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCCce---EEEEcCcCCceeEE--EEeCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---TQEYDQHLGAVNTI--TFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 465 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~---~~~~~~h~~~V~~i--~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~ 465 (590)
...-. .+..|++.+.+|+|.+||++--++ ++.+.+|...-.-+ ...+....++++++|...+||.++.+..+.
T Consensus 305 q~Lq~--s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 305 QILQF--SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhcc--ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 54432 236799999999999999997666 88999887644333 345667789999999999999999998888
Q ss_pred EeecC
Q 007768 466 YISEP 470 (590)
Q Consensus 466 ~~~~~ 470 (590)
.+..+
T Consensus 383 tipf~ 387 (425)
T KOG2695|consen 383 TIPFP 387 (425)
T ss_pred ccCCC
Confidence 77543
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.46 E-value=0.00012 Score=79.85 Aligned_cols=263 Identities=14% Similarity=0.155 Sum_probs=158.6
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC------CeE--EEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK------AVR--DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~------~V~--~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
+..++.++.++.|.-.|. .+++.+..+..... .+. .+... ++..++.++.++.|..+|.++|+.+..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDA-ATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEEC-CCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 456777888899999998 67777666543222 110 11111 226788888999999999999999988876
Q ss_pred CCcc---eEEEEecCCCCCcEEEEEE---------CCCeEEEEeCCCCceEEEEcCcCC--------------------c
Q 007768 384 GKIP---YVVKLNPDDDKQNILLAGM---------SDKKIVQWDMNTKEITQEYDQHLG--------------------A 431 (590)
Q Consensus 384 ~~~~---~~~~~~~~~~~~~~lvsg~---------~dg~I~iwD~~t~~~~~~~~~h~~--------------------~ 431 (590)
.... ..+...|.-.. .++++++ .++.|+.+|..+|+.+..+..... .
T Consensus 139 ~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 5431 11111111111 3455554 368899999999998887754211 0
Q ss_pred e-eEEEEeCCCCEEEEEeCCC------------------cEEEEECCCCcEEEEeecCCCC-----ceeEEEEc----CC
Q 007768 432 V-NTITFVDSNRRFVTSSDDK------------------SLRVWEFGIPVVIKYISEPHMH-----SMPSISLH----PN 483 (590)
Q Consensus 432 V-~~i~~~p~~~~l~s~s~Dg------------------~I~iwdl~~~~~~~~~~~~~~~-----~i~~i~~s----p~ 483 (590)
| .+..+.+.+..++.++.++ .|.-+|..+++..-........ ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234455566777777665 6888999988877665432110 00001111 13
Q ss_pred CC---EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE------------------cCCCc
Q 007768 484 TN---WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG------------------DGEGK 542 (590)
Q Consensus 484 g~---~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg------------------s~dg~ 542 (590)
+. .+++++.+|.+..+|..++..+-....... .+..+| ..++.+ ..+|.
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~--------~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ--------PMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc--------ccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 33 677888899999999999876654332100 123333 223222 24688
Q ss_pred EEEEeCCCCeEEEEEecCC--------CcE--EEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 543 CWFWDWKSCKVFRTLKCHE--------GVC--IGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 543 I~iwd~~t~~~~~~l~~h~--------~~V--~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|...|..+|+.+....... .+. ..+.. .+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEE
Confidence 9999999999888776431 111 11222 335788888999988765
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=2.2e-07 Score=100.22 Aligned_cols=216 Identities=13% Similarity=0.237 Sum_probs=148.8
Q ss_pred CeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC-eE
Q 007768 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KI 411 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-~I 411 (590)
.+..+++..|....+|++|+.+.++|+.|+..|.|+++++.+|.......++... +..+.|.-++..+|.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa-vT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA-VTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc-cccccccCCcceeeeeccccCchH
Confidence 3556678889999999999999999999999999999999999988777665433 333445444444444444444 56
Q ss_pred EEEeCCC-CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec---CCCCceeEEEEcCCCCEE
Q 007768 412 VQWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWL 487 (590)
Q Consensus 412 ~iwD~~t-~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~~i~~i~~sp~g~~l 487 (590)
.+|++.+ +...+.|. .-.++.|+.....-+.|+......+||+.+...+.++.. .....-.+..|+|+..++
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 7899864 34444443 346778876544445555556789999998876655322 123334678899998877
Q ss_pred EEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEE
Q 007768 488 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 567 (590)
Q Consensus 488 a~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v 567 (590)
+- || .+||.+....+..+..|.... .=.|+|.|.-++.-+ -|||+++.++++....-.. ..+
T Consensus 1246 ln---dG--vLWDvR~~~aIh~FD~ft~~~------~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq--c~V 1307 (1516)
T KOG1832|consen 1246 LN---DG--VLWDVRIPEAIHRFDQFTDYG------GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ--CAV 1307 (1516)
T ss_pred ee---Cc--eeeeeccHHHHhhhhhheecc------cccccCCCceEEeec-----hhhhhHHHHHHhcCccccc--eEE
Confidence 64 44 589998876666665554221 136999999988765 4899999988877654332 455
Q ss_pred EEcC
Q 007768 568 EWHP 571 (590)
Q Consensus 568 ~~sp 571 (590)
.|+.
T Consensus 1308 tFNs 1311 (1516)
T KOG1832|consen 1308 TFNS 1311 (1516)
T ss_pred Eecc
Confidence 6665
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=9.2e-05 Score=80.75 Aligned_cols=222 Identities=13% Similarity=0.143 Sum_probs=143.0
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCC-eEEEEEccCCCEEEEEecCC-----eEEEEECCC
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-VRDISFCNDGTKFLTASYDK-----NIKYWDTET 374 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-V~~l~fspdg~~l~s~s~Dg-----~I~vWd~~t 374 (590)
.|+| |++. +..++.|+.+|.|.+.+- .-+.++.++.+... |..+....+..+|++.+.|+ .|+||+++.
T Consensus 27 ~isc--~~s~-~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSS-TGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCC-CceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 4555 4565 789999999998888763 56676888888877 55554444556888877764 488998874
Q ss_pred CcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007768 375 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
-+ ....+.++. .++++-.. ......++.+++.+.+-+.+|+|-.+|.|.
T Consensus 102 ~~------~n~sP~c~~------------------~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~ 150 (933)
T KOG2114|consen 102 VD------KNNSPQCLY------------------EHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVI 150 (933)
T ss_pred cC------CCCCcceee------------------eeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEE
Confidence 32 111121210 11111111 112356788899998888999999999999
Q ss_pred EEECCC---CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007768 455 VWEFGI---PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 455 iwdl~~---~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
++.-+. ......+......+|+.+++..++..++....-..|.+|.+.... .....+..+ +..+.|..|++..
T Consensus 151 ~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~--G~~lnCss~~~~t 226 (933)
T KOG2114|consen 151 CYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--PSLKVLDNN--GISLNCSSFSDGT 226 (933)
T ss_pred EEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC--cceeeeccC--CccceeeecCCCC
Confidence 885321 122233334577899999999988874444556789999987543 222323333 5567777887765
Q ss_pred CEEEEEcCCCcEEEEeCCCCeEEEEEe-cCCCc
Q 007768 532 RFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGV 563 (590)
Q Consensus 532 ~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~ 563 (590)
..+++++.. .|.+|+.....+...+. +|...
T Consensus 227 ~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 227 YQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred ccEEEecCc-eEEEEcCCCcceeeeecCCCeEE
Confidence 545555433 69999988777766776 66543
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.36 E-value=0.00099 Score=67.07 Aligned_cols=243 Identities=13% Similarity=0.137 Sum_probs=151.9
Q ss_pred EEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCeeEEEeccC---C----CCeEEEEEccCCCEEEEEec--C
Q 007768 304 AIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH---S----KAVRDISFCNDGTKFLTASY--D 364 (590)
Q Consensus 304 ~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h---~----~~V~~l~fspdg~~l~s~s~--D 364 (590)
.+..+|+ ++.+++++ ..-.|.+||. .+-.+...+.-. . .....++++.+|++++.... .
T Consensus 40 ~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~-~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 40 NVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDT-QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEET-TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred ceeECCC-CCEEEEEEEEEeccccccceeEEEEEec-CcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 3557888 77777643 3456899998 455554433211 1 12345688899998887654 4
Q ss_pred CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC-CCceEEEEc----CcCC-ceeEEEEe
Q 007768 365 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYD----QHLG-AVNTITFV 438 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-t~~~~~~~~----~h~~-~V~~i~~~ 438 (590)
..|.|.|+..++.+..+..... ..+.|.+. .-|.+-|.||.+....+. .|+..+... .... .+..-.+.
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGC---WLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSE---EEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred CeEEEEECCCCceeeeecCCCE---EEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE
Confidence 6799999999999998876554 34444443 348899999999999887 455443321 1112 22344555
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEE--EEeecC---------CCCceeEEEEcCCCCEEEEEEcC----------CeEE
Q 007768 439 DSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEP---------HMHSMPSISLHPNTNWLAAQSLD----------NQIL 497 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~~--~~~~~~---------~~~~i~~i~~sp~g~~la~~s~d----------g~I~ 497 (590)
..+..++..+..|.|+-.|+...... ..+... ..+...-+++++..+.|++--.. ..|.
T Consensus 193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 56667777899999999998765432 222110 01234457888766655553221 2488
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEE-cCCCcEEEEeCCCCeEEEEEec
Q 007768 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSG-DGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-s~dg~I~iwd~~t~~~~~~l~~ 559 (590)
+||+.+++++.++.. ...+.+|.++.+.+ +|++. ..++.|.+||..+|++++++..
T Consensus 273 v~D~~t~krv~Ri~l------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEETTTTEEEEEEEE------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEECCCCeEEEEEeC------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 889998887765543 23355788888776 55544 4689999999999999999874
No 318
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.34 E-value=0.00053 Score=74.78 Aligned_cols=240 Identities=15% Similarity=0.188 Sum_probs=141.8
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEeccCCCC--eEEEEEcc--CCCEEEEEe---------cCCeEEEEECCCCcEEE
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA--VRDISFCN--DGTKFLTAS---------YDKNIKYWDTETGQVIR 379 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~--V~~l~fsp--dg~~l~s~s---------~Dg~I~vWd~~t~~~~~ 379 (590)
..++.++.+|.|.-+|. .+++.+..+...... -..+.-+| .+..++.++ .++.|..+|..+|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~-~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDA-ETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEEC-CCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 67888888999999998 678877766543221 00111112 224455543 46889999999999998
Q ss_pred EecCCCc-ceEE---------E-------E-ecC-CCCCcEEEEEECCC------------------eEEEEeCCCCceE
Q 007768 380 TFSTGKI-PYVV---------K-------L-NPD-DDKQNILLAGMSDK------------------KIVQWDMNTKEIT 422 (590)
Q Consensus 380 ~~~~~~~-~~~~---------~-------~-~~~-~~~~~~lvsg~~dg------------------~I~iwD~~t~~~~ 422 (590)
.+..... .... . + .+. .....++++++.++ .|.-+|+.+|+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 8765321 1000 0 0 000 01235677777665 7999999999998
Q ss_pred EEEcCcCCce------eEEEEe----CCCC---EEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEE
Q 007768 423 QEYDQHLGAV------NTITFV----DSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 423 ~~~~~h~~~V------~~i~~~----p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~ 489 (590)
..+..-.... ....+. -++. .++.++.+|.+...|..+++.+-..... ...++.+| ..+++
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv 343 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYL 343 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEE
Confidence 8874211111 111111 1232 5778888999999999999877655321 11223333 22222
Q ss_pred E------------------EcCCeEEEEEcCCceeecccccccCccc---ccce--EEEEEcCCCCEEEEEcCCCcEEEE
Q 007768 490 Q------------------SLDNQILIYSTRERFQLNKKKRFAGHIV---AGYA--CQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 490 ~------------------s~dg~I~iwd~~~~~~~~~~~~~~~~~~---~~~v--~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
+ ..+|.|.-+|+.++..+-.......... .... ..+. -.+.+|++|+.+|.|+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAF 421 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEE
Confidence 2 2356788888877765543332100000 0000 1111 256789999999999999
Q ss_pred eCCCCeEEEEEecCC
Q 007768 547 DWKSCKVFRTLKCHE 561 (590)
Q Consensus 547 d~~t~~~~~~l~~h~ 561 (590)
|..+|+.+.+++...
T Consensus 422 d~~tG~~lW~~~~~~ 436 (488)
T cd00216 422 DATTGKELWKFRTPS 436 (488)
T ss_pred ECCCCceeeEEECCC
Confidence 999999999987543
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.9e-05 Score=85.39 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=128.2
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 423 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~ 423 (590)
..++|++++ +++|+-|+.+|.|++.+....- ...+.. ++....+.++++|+.||+|.|..+-+.+...
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~---------s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDH---------SSSILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccccc---------cccccCCceEEEecCCCcEEEeeccCCccce
Confidence 456677775 6789999999999999876432 222211 1114456899999999999999999888777
Q ss_pred EEcCcCCceeEEEEeCC-----CCEEEEEeCCCcEEEEECC---CCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCe
Q 007768 424 EYDQHLGAVNTITFVDS-----NRRFVTSSDDKSLRVWEFG---IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 495 (590)
Q Consensus 424 ~~~~h~~~V~~i~~~p~-----~~~l~s~s~Dg~I~iwdl~---~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~ 495 (590)
.+. ...++.+|+++|+ .++|++|+.-| +.++.-+ ....+ ......++|.++.|. |+++|-++.+|
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIAWand~G- 180 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIAWANDDG- 180 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEec--CcEEEEecCCC-
Confidence 664 4568999999997 56899999988 7777632 22222 223467889999995 77888877665
Q ss_pred EEEEEcCCceeecccccccCc-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 496 ILIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 496 I~iwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
|++||+..+..+......... ......+.+.|.++.+++ .|= ..+|+|..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IGW-GDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Eec-CCeEEEEEEe
Confidence 999999887766544332221 123345568888876544 443 3368888776
No 320
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=0.00065 Score=64.69 Aligned_cols=186 Identities=10% Similarity=0.064 Sum_probs=111.3
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCc
Q 007768 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI 386 (590)
Q Consensus 307 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~ 386 (590)
..++...+++.|+..+.+.--|. .+++.+..-. -...|.+-+.- -|++++.|++.|.+.+.+..+|..+..+..-..
T Consensus 18 V~~dskT~v~igSHs~~~~avd~-~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDP-QSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EecCCceEEEEecCCceEEEecC-CCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 44555678888888888888888 4555544321 12233332222 467899999999999999999988888876555
Q ss_pred ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 007768 387 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 387 ~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~ 466 (590)
+.+-..... .+.++.+|+.|+..+..|.++...+...+-..+...+-+..|-...|..+...|.|.--..+.......
T Consensus 95 vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 95 VKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEF 172 (354)
T ss_pred hccceEEcC--CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCccee
Confidence 544333322 236899999999999999999988887654444334445555333444444455544333332211111
Q ss_pred eecCCCCceeE--EEEcCCCCEEEEEEcCCeEEEEE
Q 007768 467 ISEPHMHSMPS--ISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 467 ~~~~~~~~i~~--i~~sp~g~~la~~s~dg~I~iwd 500 (590)
.......+|.+ ++ -+..+..++-||.+.-++
T Consensus 173 w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 173 WAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD 205 (354)
T ss_pred hhhhcCCccccCcee---ccceEEEEEeccEEEEEc
Confidence 11111122211 11 134555666677777776
No 321
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.31 E-value=5.3e-06 Score=80.14 Aligned_cols=239 Identities=19% Similarity=0.368 Sum_probs=151.6
Q ss_pred ccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCC------------CCeeEEEEcCCCC-CEEEE
Q 007768 251 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHT------------KGVSAIRFFPKYG-HLILS 317 (590)
Q Consensus 251 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~------------~~V~~l~~sp~~g-~~L~s 317 (590)
.+.++..+++++ |.-||.-+......+ .|- .+....|++|. ..|..|.|..+.+ ..++.
T Consensus 33 efd~tg~YlatG--DkgGRVvlfer~~s~----~ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 33 EFDETGLYLATG--DKGGRVVLFEREKSY----GCE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred EeccccceEeec--CCCceEEEeeccccc----ccc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 355555566543 556776655443322 121 13344566665 3588999987643 45666
Q ss_pred EeCCCcEEEEecCCC------------------Ce-----------------------eEEEe-ccCCCCeEEEEEccCC
Q 007768 318 AGMDTKVKIWDVVNS------------------GK-----------------------CMRTY-MGHSKAVRDISFCNDG 355 (590)
Q Consensus 318 gs~Dg~I~iWd~~~~------------------~~-----------------------~~~~~-~~h~~~V~~l~fspdg 355 (590)
.+.|.+|++|.+++. +. +.+.+ ..|.-.|.+++|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999998643 10 01112 3577789999999998
Q ss_pred CEEEEEecCCeEEEEECCCCcEEE---EecCC------CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE---
Q 007768 356 TKFLTASYDKNIKYWDTETGQVIR---TFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--- 423 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~---~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~--- 423 (590)
..++++. |=.|.+|+++-..... .+... ..+....|+|.. .+.+.-.++.|.|++-|+|...+..
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~--cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM--CNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH--cceEEEecCCCcEEehhhhhhhhccCch
Confidence 8888775 6789999987432211 11111 123344555543 3678888899999999998532211
Q ss_pred -------------EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEeecC-----------CCCc---e
Q 007768 424 -------------EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEP-----------HMHS---M 475 (590)
Q Consensus 424 -------------~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~-----------~~~~---i 475 (590)
-+..-...|..+.|+++|+++++-+. -+|+|||.+.. .+++++... .... -
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 11223456889999999998887765 68999999764 445554210 0111 2
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 476 PSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 476 ~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
..+.|+.+.+.+++|+..+..-+|-.
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEEecCCcccccccccccceeeecc
Confidence 35788888899999998888888764
No 322
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.25 E-value=0.00029 Score=68.16 Aligned_cols=187 Identities=14% Similarity=0.155 Sum_probs=105.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc-------CCCCeEEEEEccC------CCEEEEEecCCeEE
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-------HSKAVRDISFCND------GTKFLTASYDKNIK 368 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-------h~~~V~~l~fspd------g~~l~s~s~Dg~I~ 368 (590)
=..++|+|+ +.+||.+...|+|+++|+ .+..+..+.. -..+|..+.|... ...|++-.+.|.++
T Consensus 46 WRkl~WSpD-~tlLa~a~S~G~i~vfdl--~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPD-CTLLAYAESTGTIRVFDL--MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCC-CcEEEEEcCCCeEEEEec--ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 356899999 999999999999999999 3343333332 2356777777652 23577778888888
Q ss_pred EEECCC-----CcEEEEecC--C--CcceEEEEecCCCCCcEEEEEEC-CCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007768 369 YWDTET-----GQVIRTFST--G--KIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 369 vWd~~t-----~~~~~~~~~--~--~~~~~~~~~~~~~~~~~lvsg~~-dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~ 438 (590)
-|-+.. .+....|.. . +.+..+.+.+. . ++|++|+. ...-.. -......+++-...
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~--h-~LLlVgG~~~~~~~~-----------s~a~~~GLtaWRiL 188 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK--H-RLLLVGGCEQNQDGM-----------SKASSCGLTAWRIL 188 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC--C-CEEEEeccCCCCCcc-----------ccccccCceEEEEc
Confidence 776532 233334432 2 23334444443 3 45555543 221000 00112223332222
Q ss_pred CCCCE--EEEEeCCCc------EEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007768 439 DSNRR--FVTSSDDKS------LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 439 p~~~~--l~s~s~Dg~------I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~ 506 (590)
.+..+ .++...|+. ..+|.+-+..... ........|..|.++|+|..||+...+|.|.+|++.+-..
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CCCCcEEEccccCccccccccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 22221 112222221 2333332221111 1123567899999999999999999999999999977443
No 323
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.23 E-value=0.00087 Score=75.20 Aligned_cols=144 Identities=15% Similarity=0.244 Sum_probs=104.8
Q ss_pred CCEEEEE-ecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCC----CCcEEEEEECCCeEEEEeCCCCc--eEEE-Ec
Q 007768 355 GTKFLTA-SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD----KQNILLAGMSDKKIVQWDMNTKE--ITQE-YD 426 (590)
Q Consensus 355 g~~l~s~-s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~----~~~~lvsg~~dg~I~iwD~~t~~--~~~~-~~ 426 (590)
.++|+.- .....|.-.|+++|+++..+..+....+..+.|... ...-.++|-++..|..||.|-.. ++.. ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 345789999999999999999888776777777532 12347888899999999999642 3321 11
Q ss_pred --CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 427 --QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 427 --~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
......+|++-..+| +||+|+.+|.||+||- .+...++...+...+|..|.++.+|+||++.+ +..|.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 133456777776655 8999999999999994 44444555556688999999999999998866 556777764
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.22 E-value=7.6e-07 Score=93.54 Aligned_cols=198 Identities=17% Similarity=0.251 Sum_probs=128.3
Q ss_pred CCCeeEEEEcCCCC-CEEEEEeCCCcEEEEecCCCCee-EEEeccCCCCeEEEEEcc-CCCEEEEEe----cCCeEEEEE
Q 007768 299 TKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVVNSGKC-MRTYMGHSKAVRDISFCN-DGTKFLTAS----YDKNIKYWD 371 (590)
Q Consensus 299 ~~~V~~l~~sp~~g-~~L~sgs~Dg~I~iWd~~~~~~~-~~~~~~h~~~V~~l~fsp-dg~~l~s~s----~Dg~I~vWd 371 (590)
...+.|++++-+.. .+++.|..+|.|-+-.+.+.... .....+|....++++|++ |.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45577888776544 57888999999999988544433 344567888999999999 566666662 356899999
Q ss_pred CCCC--cEEE--EecC--CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC-CCCE
Q 007768 372 TETG--QVIR--TFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRR 443 (590)
Q Consensus 372 ~~t~--~~~~--~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p-~~~~ 443 (590)
+.++ .+.. .|.. .....++++. ....++++|+....+.++|++.. .....+ ....+..+.+.| .+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwl---rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWL---RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred cccccCCCccccccccccccCccccccc---cCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 9887 2221 1222 1122244444 34478999999999999999843 222222 234566788888 5667
Q ss_pred EEEEeCCCcEEEEE-CCCC-cEEEEee---cCCCCceeEEEEcCCC-CEEEEEEc-CCeEEEEEcC
Q 007768 444 FVTSSDDKSLRVWE-FGIP-VVIKYIS---EPHMHSMPSISLHPNT-NWLAAQSL-DNQILIYSTR 502 (590)
Q Consensus 444 l~s~s~Dg~I~iwd-l~~~-~~~~~~~---~~~~~~i~~i~~sp~g-~~la~~s~-dg~I~iwd~~ 502 (590)
+++-. ||.|.+|| .++- .++..+. ......+..++|+|.. ..+++.+. .++|++|++.
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 76665 99999999 3322 2222221 1122348889999963 34555554 4789999875
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=3.1e-05 Score=83.81 Aligned_cols=262 Identities=10% Similarity=0.060 Sum_probs=145.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEe
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~ 381 (590)
+++++|+|. .-+|++|-.-|.+.+|.. +..+.......|..+|..+.||++|..++++..-|.|.+|...-...++..
T Consensus 62 atSLCWHpe-~~vLa~gwe~g~~~v~~~-~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~ 139 (1416)
T KOG3617|consen 62 ATSLCWHPE-EFVLAQGWEMGVSDVQKT-NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTS 139 (1416)
T ss_pred hhhhccChH-HHHHhhccccceeEEEec-CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccc
Confidence 567999999 788999999999999998 555666666789999999999999999999999999999987632222211
Q ss_pred -----cCCCcce--EEEEecCCCC---CcEEEEEECCCeEE-EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 382 -----STGKIPY--VVKLNPDDDK---QNILLAGMSDKKIV-QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 382 -----~~~~~~~--~~~~~~~~~~---~~~lvsg~~dg~I~-iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
..+.... |..+.+.... ....++.+.+..+- .++.+........ .|. -+|+|..|+.++.+
T Consensus 140 ~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-~ks-------gv~~g~~F~~~~~~ 211 (1416)
T KOG3617|consen 140 NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-EKS-------GVPKGTEFLFAGKS 211 (1416)
T ss_pred hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-ccc-------CCCCCcEEEEEcCC
Confidence 1222233 3333333110 01122233333222 3333311111111 111 13678888889999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC-c---------------ee--------
Q 007768 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-R---------------FQ-------- 506 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~-~---------------~~-------- 506 (590)
|+|+..|-+. .+........ ...+-|.+...-+++...+-++.+|-... + .+
T Consensus 212 GtVyyvdq~g-~~~~V~k~dS---~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sE 287 (1416)
T KOG3617|consen 212 GTVYYVDQNG-RQRTVHKLDS---EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSE 287 (1416)
T ss_pred ceEEEEcCCC-cEEEEEEccc---hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccc
Confidence 9988877432 2222111111 01122222222222222222222221100 0 00
Q ss_pred ---ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC-CC------CeEEEEEec---CCCcEEEEEEcCCC
Q 007768 507 ---LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KS------CKVFRTLKC---HEGVCIGCEWHPLE 573 (590)
Q Consensus 507 ---~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~-~t------~~~~~~l~~---h~~~V~~v~~sp~~ 573 (590)
+.....-.|......+.+++++..+..|+.|...|.+.+|-- .. +.-...+.+ -.+.|+.+.|.| -
T Consensus 288 ssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~-~ 366 (1416)
T KOG3617|consen 288 SSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP-I 366 (1416)
T ss_pred ccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc-c
Confidence 000111112223456788999999999999999999999953 22 123444443 346899999998 3
Q ss_pred CCEEE
Q 007768 574 QSKVA 578 (590)
Q Consensus 574 ~~~l~ 578 (590)
.+.++
T Consensus 367 k~~~a 371 (1416)
T KOG3617|consen 367 KSTAA 371 (1416)
T ss_pred cchhh
Confidence 33333
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=0.0013 Score=62.78 Aligned_cols=143 Identities=10% Similarity=-0.033 Sum_probs=102.5
Q ss_pred CCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeE
Q 007768 355 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 434 (590)
Q Consensus 355 g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~ 434 (590)
.++++.|+..+.+..-|..+|+.+.....+....+-++... ++++.|+..|.+++.+..+|...+.+.....--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvg----dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVG----DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEEC----CEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 46788899999999999999999988777776666555532 46999999999999999999887776533222223
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 435 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 435 i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
....+++..+..|+.|++.+..|.++..++....- ......+-++.|-...|.++...|.+.--...
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCCceEEEEeccceEEEEccC
Confidence 44567889999999999999999998888766533 22233344556644445555556655544443
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.0006 Score=73.85 Aligned_cols=205 Identities=11% Similarity=0.118 Sum_probs=120.2
Q ss_pred CCCEEEEEec-CCeEEEEECCCCcEEEEecCCC--------------cceEEEE----ecCCCCCc-EEEEEECCCeEEE
Q 007768 354 DGTKFLTASY-DKNIKYWDTETGQVIRTFSTGK--------------IPYVVKL----NPDDDKQN-ILLAGMSDKKIVQ 413 (590)
Q Consensus 354 dg~~l~s~s~-Dg~I~vWd~~t~~~~~~~~~~~--------------~~~~~~~----~~~~~~~~-~lvsg~~dg~I~i 413 (590)
||++|+.-.. +..|...++...++-+.+..+. ..++++- .|.+.++. +....-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6777777654 4566666776665544433221 1122111 11111222 2222333466777
Q ss_pred EeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe----------------------------------------CCCcE
Q 007768 414 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS----------------------------------------DDKSL 453 (590)
Q Consensus 414 wD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s----------------------------------------~Dg~I 453 (590)
.|..+.+....+.-- +....+.++++++++++++ .++.|
T Consensus 220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 788877766655322 2335567777777776665 12457
Q ss_pred EEEECCC-----CcEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeec-----ccccccCc-ccccc
Q 007768 454 RVWEFGI-----PVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLN-----KKKRFAGH-IVAGY 521 (590)
Q Consensus 454 ~iwdl~~-----~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~-----~~~~~~~~-~~~~~ 521 (590)
.+.|..+ ...+.++ +-......+.++|+|+++++++ .++.|.|+|+....... ......+. .....
T Consensus 299 ~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG 376 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG 376 (635)
T ss_pred EEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence 7778776 3455555 3455678899999999887765 47999999997644211 00000000 01112
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCC----------CeEEEEEecCC
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHE 561 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t----------~~~~~~l~~h~ 561 (590)
....+|.++|....+-.-|..|..||+.. ...+.++..|-
T Consensus 377 PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y 426 (635)
T PRK02888 377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY 426 (635)
T ss_pred cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC
Confidence 23478999998888888899999999876 34555565543
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.17 E-value=0.0013 Score=66.24 Aligned_cols=258 Identities=16% Similarity=0.166 Sum_probs=151.7
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec----------CCeEEEEECCCCcEEEEecCCCcce---
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIPY--- 388 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~----------Dg~I~vWd~~t~~~~~~~~~~~~~~--- 388 (590)
+.+.|.|. ..++.+-.+.. +-.-.+..+|+++.+++++. .-.|.+||..+......+..+..+.
T Consensus 17 ~rv~viD~-d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDA-DSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEET-TTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEEC-CCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 47899998 56776665543 22334678999999887542 3469999999999888765544311
Q ss_pred -----EEEEecCCCCCcEEEEE--ECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 007768 389 -----VVKLNPDDDKQNILLAG--MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 389 -----~~~~~~~~~~~~~lvsg--~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~ 460 (590)
...++.++ .++++. +--..|.+.|+..++.+.++.... |...-|. ++.|.+-|.||++.-..+..
T Consensus 94 ~~~~~~~~ls~dg---k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 94 VPYKNMFALSADG---KFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp S--GGGEEE-TTS---SEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETS
T ss_pred cccccceEEccCC---cEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECC
Confidence 22333322 222222 223456677777777777664322 1122222 35788999999999998873
Q ss_pred -CcEEEEe---ecCCCCc-eeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec--cccccc-----CcccccceEEEEEc
Q 007768 461 -PVVIKYI---SEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--KKKRFA-----GHIVAGYACQVNFS 528 (590)
Q Consensus 461 -~~~~~~~---~~~~~~~-i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~--~~~~~~-----~~~~~~~v~~v~~s 528 (590)
++..... ..+...+ +..-.+...+..++..+.+|.|+-.|+....... ....+. ..-..+.-..++++
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH 246 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence 3333221 1222222 2234455566666667899999998886543111 111110 01011112237888
Q ss_pred CCCCEEEEEc---CCC-------cEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEe-CCCcEEEcC
Q 007768 529 PDGRFVMSGD---GEG-------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs---~dg-------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~Dg~I~iWD 590 (590)
+..+.|++-- .+| .|+++|+.+++.+.++..- ..+.+|..+.++..+|++.+ .++.|.+||
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 7665554421 122 4999999999999999842 35779999987777887654 578999987
No 329
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.13 E-value=0.004 Score=62.38 Aligned_cols=230 Identities=12% Similarity=0.173 Sum_probs=132.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEe----------
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF---------- 381 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~---------- 381 (590)
++.|+.|+.+| +.++++.......+... ...|..+...++-+.|++-+ |+.|.++++.........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 78899999999 89998833333333332 23399999999777777665 499999998765444311
Q ss_pred ---cCCCcceEEEEe-cCCCCCcEEEEEECCCeEEEEeCCCC-----ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007768 382 ---STGKIPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTK-----EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 382 ---~~~~~~~~~~~~-~~~~~~~~lvsg~~dg~I~iwD~~t~-----~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
.......+..+. .....+...++.....+|.+|..... ....++. -...+.+++|. ++.|+.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~- 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG- 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence 112222333333 12222234444555568888877653 3445553 34788899998 56777776544
Q ss_pred EEEEECCCCcEEEEeecCC-----------CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec-ccccccCccccc
Q 007768 453 LRVWEFGIPVVIKYISEPH-----------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAG 520 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~-----------~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~ 520 (590)
..+.|+.+........... ..++..+.+ +++.+|++. +..-.+.+... .... ..-.+. .
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G-~~~r~~~i~W~-----~ 229 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNG-EPSRKSTIQWS-----S 229 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCC-CcCcccEEEcC-----C
Confidence 7888988655443332111 112333333 345555542 33333444432 2221 111121 2
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC
Q 007768 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
....+++ ...||++.+.+ .|.||++.++++++++....
T Consensus 230 ~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 230 APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 2334444 34588777665 59999999999999888543
No 330
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.9e-05 Score=79.97 Aligned_cols=212 Identities=13% Similarity=0.159 Sum_probs=136.7
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE---EecCC-CcceEEEEecCCCCCcEEEEEEC-CCeEEEEeC
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR---TFSTG-KIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDM 416 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~---~~~~~-~~~~~~~~~~~~~~~~~lvsg~~-dg~I~iwD~ 416 (590)
|...|+.+.-. -.+++++++.||.++.|--..-..+. .+..+ .....++.+.+ +.++.+++. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d---g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD---GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc---ceeEeeccCcccceeEEEe
Confidence 66777766554 45799999999999999754322221 12111 11223333333 256777666 999999999
Q ss_pred CCCceEEEEc--CcCCceeEEEEeCCC--CEEEEEeCCCcEEEEECCCCc-EEEEeecCCCCceeEEEEcCCCCEEEEEE
Q 007768 417 NTKEITQEYD--QHLGAVNTITFVDSN--RRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 417 ~t~~~~~~~~--~h~~~V~~i~~~p~~--~~l~s~s~Dg~I~iwdl~~~~-~~~~~~~~~~~~i~~i~~sp~g~~la~~s 491 (590)
.+-..+.-++ -..+.+.++.-..+. ..-++.-.++.+.++|-.... ....+..-|..+|.++.+.+.+..+++..
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 8765543322 122222222211111 122334467899999976554 44555567999999999999999999999
Q ss_pred cCCeEEEEEcCCceeecccc----------cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE
Q 007768 492 LDNQILIYSTRERFQLNKKK----------RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~----------~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
..|.|.-|......+..... .+.-........++.|+|+|..+.+-+.|..|+++++++|++++.+
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 99999999987421111100 0111122345668999999999999999999999999999876554
No 331
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.09 E-value=0.0082 Score=61.70 Aligned_cols=273 Identities=12% Similarity=0.137 Sum_probs=135.7
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCC-CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC
Q 007768 306 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 306 ~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~ 384 (590)
+|.+++.++|+++..||.-.+|-+.-....+..+.... .......++++++.++-......|+-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46778556777777777766665533444555555443 22335777888888876666678999999998876555544
Q ss_pred Ccce-EEEEecCCCCCcEEEEEE-----------------------CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007768 385 KIPY-VVKLNPDDDKQNILLAGM-----------------------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 385 ~~~~-~~~~~~~~~~~~~lvsg~-----------------------~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
..-. ...+..+.+. .. ++|. ....|.-.|+.+|+....+. ....+..+.|+|.
T Consensus 122 ~~~~g~gt~v~n~d~-t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 122 DDWKGYGTWVANSDC-TK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT 198 (386)
T ss_dssp TTEEEEEEEEE-TTS-SE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred cccccccceeeCCCc-cE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence 3322 3445444332 22 2221 12456677888887655443 4567888999997
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCc-EEEEeec-CCCCceeEEEEcCCCCEEEEEEc-----CCeEEEEEcCCceeec
Q 007768 441 NRRFVTSSDDK-----SLRVWEFGIPV-VIKYISE-PHMHSMPSISLHPNTNWLAAQSL-----DNQILIYSTRERFQLN 508 (590)
Q Consensus 441 ~~~l~s~s~Dg-----~I~iwdl~~~~-~~~~~~~-~~~~~i~~i~~sp~g~~la~~s~-----dg~I~iwd~~~~~~~~ 508 (590)
...+++=|..| .-|||-++... ..+.+.. .....+..=-|.|+|..|..-+. +..|.-++..+.....
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 77666554433 23667664422 2222211 22334455568899987665432 3346666776653321
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCC----------------cEEEEeCCCCeEEEEEecCC----------C
Q 007768 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG----------------KCWFWDWKSCKVFRTLKCHE----------G 562 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg----------------~I~iwd~~t~~~~~~l~~h~----------~ 562 (590)
+.. ......+..++||++++-=+.|. -|+++++..++...... |. .
T Consensus 279 -~~~------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~-h~~sw~v~~~~~q 350 (386)
T PF14583_consen 279 -LME------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR-HDTSWKVLDGDRQ 350 (386)
T ss_dssp -EEE------E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE--------BTTBSS
T ss_pred -EEe------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeee-ccCcceeecCCCc
Confidence 111 11233466788998886543332 46778888766542221 21 1
Q ss_pred -cEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 563 -VCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 563 -~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.=....|+|++..+|+++...|...||
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp TT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred cCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 124678999777778888888887665
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0073 Score=63.63 Aligned_cols=262 Identities=15% Similarity=0.170 Sum_probs=172.7
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCCCcEEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~ 379 (590)
....+...|.+....++-.....+.+.+.. ..........-...-..+++++.+..++ +...+..|.+.|+.+.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 455666777733444443333355555542 2111111111113345778888887444 45556999999999999999
Q ss_pred EecCCCcceEEEEecCCCCCcEEEEEE--CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEE
Q 007768 380 TFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVW 456 (590)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~lvsg~--~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iw 456 (590)
....+..+..+.+.+... .+.++-. .++.+.+.|..++..+.....-..+ ..+.+.|++..++.+. .++.|.+.
T Consensus 111 ~~~vG~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred EeeeccCCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 998888888888888654 4555555 4799999999999888875443344 8899999999666554 78899999
Q ss_pred ECCCCcEEEEee----cCCCCceeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 457 EFGIPVVIKYIS----EPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 457 dl~~~~~~~~~~----~~~~~~i~~i~~sp~g~~la~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|........ -. .........+.+.|++.++.+.... +.+...|..+............ . ....+.++|
T Consensus 188 ~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~---~-~~~~v~~~p 262 (381)
T COG3391 188 DTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS---G-APRGVAVDP 262 (381)
T ss_pred eCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc---C-CCCceeECC
Confidence 977665553 11 1223345678999999977666544 4899999887654432111111 1 233588999
Q ss_pred CCCEEEEEcC-CCcEEEEeCCCCeEEEEEecCCC---cEEEEEEcC
Q 007768 530 DGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHEG---VCIGCEWHP 571 (590)
Q Consensus 530 dg~~l~sgs~-dg~I~iwd~~t~~~~~~l~~h~~---~V~~v~~sp 571 (590)
+|.++.+... .+.+.+.|..+......+..... .+..+++.+
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9999988854 48999999999888777654332 345555554
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.04 E-value=0.0011 Score=68.30 Aligned_cols=215 Identities=16% Similarity=0.232 Sum_probs=127.5
Q ss_pred CeEEEEECCCCcEEEEecCC--CcceEEEEec-CCC---CCcEEEEEEC---------C-CeEEEEeCCCC-----ce--
Q 007768 365 KNIKYWDTETGQVIRTFSTG--KIPYVVKLNP-DDD---KQNILLAGMS---------D-KKIVQWDMNTK-----EI-- 421 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~-~~~---~~~~lvsg~~---------d-g~I~iwD~~t~-----~~-- 421 (590)
..|++.|..+.+.+..+... ..+.+++... ... ...++++|+. . |.|.++++... ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46888888888877766543 3333333322 221 2477887764 2 89999999884 22
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEE
Q 007768 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~-~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd 500 (590)
+.. ....++|++|+-. .+ +|+++. .+.|++|++.... ....-.......+.++... ++++++|..-..|.++.
T Consensus 82 i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 222 2357889999887 33 455544 4889999998877 4444332233345555544 66999999888888875
Q ss_pred cCC-ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-------C--eEEEEEecCC-CcEEEE--
Q 007768 501 TRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-------C--KVFRTLKCHE-GVCIGC-- 567 (590)
Q Consensus 501 ~~~-~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-------~--~~~~~l~~h~-~~V~~v-- 567 (590)
... ...+.... .......++++.|-++++.+++++.+|.|.++.... + ++......|- ..|+++
T Consensus 156 ~~~~~~~l~~va---~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 232 (321)
T PF03178_consen 156 YDEENNKLILVA---RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRR 232 (321)
T ss_dssp EETTTE-EEEEE---EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE
T ss_pred EEccCCEEEEEE---ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEE
Confidence 543 12222222 122245577888886778999999999999998752 2 3333333333 356666
Q ss_pred -EEcCC--CCC-----EEEEEeCCCcEEE
Q 007768 568 -EWHPL--EQS-----KVATCGWDGLIKY 588 (590)
Q Consensus 568 -~~sp~--~~~-----~l~s~g~Dg~I~i 588 (590)
.+.|. +.. .++.++.+|.|.+
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEE
Confidence 44441 222 4888889998863
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00025 Score=71.23 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=68.9
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCC-CEEEEEecCCeEEEEEC
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDT 372 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~ 372 (590)
.+.+|...|..|+|+|...-+|..++.+.+|+|.|+ .+..++..+..| ..+++++|.-+. ++|..|-..|.|.|||+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dl-et~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDL-ETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEec-ccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 566788899999999995558999999999999999 677788888877 789999999855 56677778999999999
Q ss_pred CCCc
Q 007768 373 ETGQ 376 (590)
Q Consensus 373 ~t~~ 376 (590)
+..+
T Consensus 266 R~~~ 269 (463)
T KOG1645|consen 266 RQPE 269 (463)
T ss_pred cCCC
Confidence 8653
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00024 Score=77.61 Aligned_cols=187 Identities=10% Similarity=0.206 Sum_probs=123.2
Q ss_pred cEEEEEECCCeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCCC-----cEEEEECCC------CcEE---
Q 007768 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDK-----SLRVWEFGI------PVVI--- 464 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~------~~~~--- 464 (590)
..++.|+.+|.|.+++-. -+.++.+..+... |..+.......+|++.+.|+ .|+||++.. +.++
T Consensus 36 ~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ 114 (933)
T KOG2114|consen 36 GSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH 114 (933)
T ss_pred ceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence 579999999999988743 3344666666666 44444444446777777665 489999853 3333
Q ss_pred EEee--cC-CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007768 465 KYIS--EP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 465 ~~~~--~~-~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
+... .+ ...++.+++++.+-+.+|+|-.+|.|.++.-.-..... .+.--.|....+|+.+++..+++.++-.....
T Consensus 115 ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg-sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~ 193 (933)
T KOG2114|consen 115 RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG-SRQDYSHRGKEPITGLALRSDGKSVLFVATTE 193 (933)
T ss_pred eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc-cceeeeccCCCCceeeEEecCCceeEEEEecc
Confidence 1111 12 35678899999999999999999999998532111011 12223344567899999999998844444456
Q ss_pred cEEEEeCCCCeE-EEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 542 KCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 542 ~I~iwd~~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.|.+|.+....+ ...+..|...+.|..+++ ....+++|+. ..|.+||
T Consensus 194 ~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~~-e~l~fY~ 241 (933)
T KOG2114|consen 194 QVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAGS-EFLYFYD 241 (933)
T ss_pred eeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEecC-ceEEEEc
Confidence 799999874332 455777888899999998 4444555553 3465554
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.02 E-value=0.00059 Score=73.90 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=109.3
Q ss_pred CCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCC---
Q 007768 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD--- 396 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~--- 396 (590)
..+.+.+.|. .+.+...++.-- .....++++++|.++++++++ .+.+..+..+.......++.|.+..
T Consensus 213 y~~~vSvID~-etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyN-------sE~G~tl~em~a~e~d~~vvfni~~iea 283 (635)
T PRK02888 213 YRSLFTAVDA-ETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYN-------SEEGVTLAEMMAAERDWVVVFNIARIEE 283 (635)
T ss_pred eeEEEEEEEC-ccceEEEEEEeC-CCcccceECCCCCEEEEeccC-------cccCcceeeeccccCceEEEEchHHHHH
Confidence 3456667776 344554444322 244678899999999888753 2334444444333333445544431
Q ss_pred --CCCcEEEEEECCCeEEEEeCCC----C-ceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCcE-----
Q 007768 397 --DKQNILLAGMSDKKIVQWDMNT----K-EITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVV----- 463 (590)
Q Consensus 397 --~~~~~lvsg~~dg~I~iwD~~t----~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~~----- 463 (590)
..+.+... .++.|.++|.++ + ..+..+. -......+.++|+|+++++++. +.+|.|.|+.+...
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 11233333 367899999998 3 4444443 4556788999999998877654 88999999977442
Q ss_pred -------EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 464 -------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 464 -------~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
...+. -.......+|.++|+...+...|.+|..|++..
T Consensus 361 ~~~~~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22222 223344678899999888889999999999875
No 337
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.00 E-value=0.01 Score=65.17 Aligned_cols=273 Identities=15% Similarity=0.157 Sum_probs=157.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCC-CCeE----------EEEEccCCCEEEEEecCCeEEEEECCCCcEEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVR----------DISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~----------~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|+.++.++.|.-.|. .+++.+..+.... ..+. .+++ .+..++.++.|+.|...|..+|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa-~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDA-KTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEEC-CCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 456777777888888888 5777776654211 1111 1222 234677888899999999999999988
Q ss_pred ecCCCcc--eEEEEecCCCCCcEEEEEEC------CCeEEEEeCCCCceEEEEcCcCC----------------------
Q 007768 381 FSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLG---------------------- 430 (590)
Q Consensus 381 ~~~~~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~t~~~~~~~~~h~~---------------------- 430 (590)
+...... ..+...|.-.+ ..++++.. +|.|+.+|.++|+.+..+..-..
T Consensus 146 ~~~~~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 7643211 11111111111 24555543 68999999999998876532111
Q ss_pred ---------ce-eEEEEeCCCCEEEEEeCC-----C-----------cEEEEECCCCcEEEEeecCCC--------Ccee
Q 007768 431 ---------AV-NTITFVDSNRRFVTSSDD-----K-----------SLRVWEFGIPVVIKYISEPHM--------HSMP 476 (590)
Q Consensus 431 ---------~V-~~i~~~p~~~~l~s~s~D-----g-----------~I~iwdl~~~~~~~~~~~~~~--------~~i~ 476 (590)
.+ ..+++.+...+++.+... + +|.-.|+++++..-.+...+. ....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 11 134566655666555421 2 566778888877655543221 1112
Q ss_pred EEEEcCCCC---EEEEEEcCCeEEEEEcCCceeecccc-----cc----c---Cc-------------ccccc-------
Q 007768 477 SISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKK-----RF----A---GH-------------IVAGY------- 521 (590)
Q Consensus 477 ~i~~sp~g~---~la~~s~dg~I~iwd~~~~~~~~~~~-----~~----~---~~-------------~~~~~------- 521 (590)
-+.+..+|+ .++.+..+|.++++|..+++.+.... .+ . +. .....
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 223334665 78889999999999998876642100 00 0 00 00000
Q ss_pred ----eEEEEEcCCCCEEEEEcC---------------------------------CCcEEEEeCCCCeEEEEEecCCCcE
Q 007768 522 ----ACQVNFSPDGRFVMSGDG---------------------------------EGKCWFWDWKSCKVFRTLKCHEGVC 564 (590)
Q Consensus 522 ----v~~v~~spdg~~l~sgs~---------------------------------dg~I~iwd~~t~~~~~~l~~h~~~V 564 (590)
-..++++|+..+++.... -|.|.-+|+.+++.+..........
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~ 464 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW 464 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence 012556666655544332 2568889999999888776432212
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 565 IGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+.... .+.+++.++.||.++.+|
T Consensus 465 ~~~l~t--~g~lvf~g~~~G~l~a~D 488 (527)
T TIGR03075 465 GGVLAT--AGDLVFYGTLEGYFKAFD 488 (527)
T ss_pred CcceEE--CCcEEEEECCCCeEEEEE
Confidence 222122 334777788899999876
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00099 Score=70.69 Aligned_cols=228 Identities=16% Similarity=0.226 Sum_probs=140.0
Q ss_pred CeeEEEeccCCCCeEEEEEccCCCEEEEEec---C-CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC
Q 007768 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASY---D-KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~---D-g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
+...+.+..-...+..-.|+|++..++..+. . ..+.++++.+++.............-.|+|++. .++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~--~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS--KLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCC--EEEEEECCC
Confidence 4444445455566777889998887665432 2 459999999998877777666667778888764 677787777
Q ss_pred Ce--EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeecCCCCceeEEEEcCC
Q 007768 409 KK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 409 g~--I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
|. |+++|+.++...+ +..-.+.-..-.|+|+|++++..++. | .|.++++.......... ....-..-.|+|+
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~Spd 336 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPD 336 (425)
T ss_pred CCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCC
Confidence 75 6666887776433 44444444467899999998877653 3 46666776655533332 2222227789999
Q ss_pred CCEEEEEEcC-Ce--EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-cEEEEe-CCCCeEEEEEe
Q 007768 484 TNWLAAQSLD-NQ--ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWD-WKSCKVFRTLK 558 (590)
Q Consensus 484 g~~la~~s~d-g~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd-~~t~~~~~~l~ 558 (590)
|++|+..+.. |. |.++++.++... ..+.. .......+|.++|+.++..+..+ .=.++. ..+++....+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~---~~lt~---~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKI---RILTS---TYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcE---EEccc---cccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 9999888753 44 666666554321 11111 11122357888888877554433 222222 23444444555
Q ss_pred cCCCcEEEEEEcC
Q 007768 559 CHEGVCIGCEWHP 571 (590)
Q Consensus 559 ~h~~~V~~v~~sp 571 (590)
...+.+..-+|+|
T Consensus 411 ~~~~~~~~p~w~~ 423 (425)
T COG0823 411 LADGDVRVPAWSP 423 (425)
T ss_pred ccCcceecccccC
Confidence 5555666666665
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.97 E-value=6.6e-06 Score=86.69 Aligned_cols=203 Identities=14% Similarity=0.205 Sum_probs=126.7
Q ss_pred CCeEEEEEccCC--CEEEEEecCCeEEEEECCCCcEE-EEecCCCcceEEEEecCCCCCcEEEEEE----CCCeEEEEeC
Q 007768 344 KAVRDISFCNDG--TKFLTASYDKNIKYWDTETGQVI-RTFSTGKIPYVVKLNPDDDKQNILLAGM----SDKKIVQWDM 416 (590)
Q Consensus 344 ~~V~~l~fspdg--~~l~s~s~Dg~I~vWd~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~lvsg~----~dg~I~iwD~ 416 (590)
..+.|+++.-+. ..++.|..+|.|.+-.++...-- ..+..+....|.+..+..-+.+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 456667665533 46778888899998877644322 3444444445555555544556777774 3678999999
Q ss_pred CCC--ce--EEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC-CCCEEEEE
Q 007768 417 NTK--EI--TQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQ 490 (590)
Q Consensus 417 ~t~--~~--~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~la~~ 490 (590)
.++ .+ ...+.. .....++++|..+.+.+++|.....+.++|++........ -....+..+.+.| .++|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceecc
Confidence 876 11 112222 3456678999988889999999999999999843322111 1334567788899 77888775
Q ss_pred EcCCeEEEEEc-CCceeecccccccCcccccceEEEEEcCC--CCEEEEEcCCCcEEEEeCC
Q 007768 491 SLDNQILIYST-RERFQLNKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 491 s~dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~v~~v~~spd--g~~l~sgs~dg~I~iwd~~ 549 (590)
. ||.|.+||. ++-.................+..++|+|- |.+.+..-..++|+++|+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 999999993 33221111111111111224667999984 4333344456889999975
No 340
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.95 E-value=0.029 Score=59.14 Aligned_cols=274 Identities=9% Similarity=0.103 Sum_probs=148.3
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCC-ee--EEEeccCCCCeEEEEEcc----CCCEEEEEecCCeEEEEECCC--C----
Q 007768 309 PKYGHLILSAGMDTKVKIWDVVNSG-KC--MRTYMGHSKAVRDISFCN----DGTKFLTASYDKNIKYWDTET--G---- 375 (590)
Q Consensus 309 p~~g~~L~sgs~Dg~I~iWd~~~~~-~~--~~~~~~h~~~V~~l~fsp----dg~~l~s~s~Dg~I~vWd~~t--~---- 375 (590)
+++...|++||..|.++||+....+ +. +..-..-..+|..|..-. .....++.=.-+.+.||.+.. |
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 3446799999999999999984322 11 111223457888887643 223333445567888887721 1
Q ss_pred ------cEEEEecCCCcceEEEEecCCCC--CcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007768 376 ------QVIRTFSTGKIPYVVKLNPDDDK--QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 376 ------~~~~~~~~~~~~~~~~~~~~~~~--~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
+.+.........+.+++-+.+.. ..++.+-+.||.+.+|+-+.-.....+.. .--...+++.+....|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 11222233444555555544432 47888899999999999876654444443 2233457888888899999
Q ss_pred eCCCcEEEEECCCCcE---------------------EEEeecCCCCceeEE---EEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 448 SDDKSLRVWEFGIPVV---------------------IKYISEPHMHSMPSI---SLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~---------------------~~~~~~~~~~~i~~i---~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
+.+..|..|....-.. ...+...-...+..| .++.....+++-+ ...+.+.+...
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G 271 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG 271 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC
Confidence 9988888887632100 000000111222222 2222222333322 33455554432
Q ss_pred ceeecccccccCcccccceEEE--EEcCCC-CEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcE-EEEEEcCCCCCEEEE
Q 007768 504 RFQLNKKKRFAGHIVAGYACQV--NFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC-IGCEWHPLEQSKVAT 579 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v--~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V-~~v~~sp~~~~~l~s 579 (590)
.+...+.+......-.+..+ ...+.. ..++.++.++.+.||. ..+++..-+....+| ..++..+.-..+|++
T Consensus 272 --~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 --SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVS 347 (418)
T ss_pred --eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEE
Confidence 22223333222111111112 112221 2588889999999985 555555555444433 222322324568999
Q ss_pred EeCCCcEEE
Q 007768 580 CGWDGLIKY 588 (590)
Q Consensus 580 ~g~Dg~I~i 588 (590)
-+.+|.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 999999865
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0028 Score=66.56 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=129.7
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC------------------------------------------eeEEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------------------------------------------KCMRT 338 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~------------------------------------------~~~~~ 338 (590)
.|+++.|.+. .--|++|...|.|.||...... .+...
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 4889999998 6678888899999998662110 01112
Q ss_pred eccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC---------cceEEEEe-----cCCCCCcEEEE
Q 007768 339 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---------IPYVVKLN-----PDDDKQNILLA 404 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~---------~~~~~~~~-----~~~~~~~~lvs 404 (590)
+....+.|++++.|.=| +++.|..+|.+.|.|++....+..-.... .+.++.|. -++...-.+++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 23346789999998544 89999999999999999888877633222 22233332 12222357899
Q ss_pred EECCCeEEEEeCC--C-Cc----eEEEEcCcCCceeEEEEe-CCC--------------------CEEEEEeCCCcEEEE
Q 007768 405 GMSDKKIVQWDMN--T-KE----ITQEYDQHLGAVNTITFV-DSN--------------------RRFVTSSDDKSLRVW 456 (590)
Q Consensus 405 g~~dg~I~iwD~~--t-~~----~~~~~~~h~~~V~~i~~~-p~~--------------------~~l~s~s~Dg~I~iw 456 (590)
|...|.+.+|.+- . +. .......+.++|..|... .+. +-+++...+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999874 1 21 122223466777666643 210 224555557889999
Q ss_pred ECCCCcEEEEeecCCCCceeEEEE-----cCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007768 457 EFGIPVVIKYISEPHMHSMPSISL-----HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 457 dl~~~~~~~~~~~~~~~~i~~i~~-----sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
...+.+....... .......+++ ...+..|++-..+|.|++|.+..-+.+......... ....+...+++++|
T Consensus 241 ~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~-d~~~~~~ssis~~G 318 (395)
T PF08596_consen 241 KPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL-DSRRLSSSSISRNG 318 (395)
T ss_dssp -TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----HHHHTT-EE-TTS
T ss_pred eCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc-ccccccccEECCCC
Confidence 9987776655542 2222333444 235677888899999999999876555444332111 12223346778888
Q ss_pred CEEEEEc
Q 007768 532 RFVMSGD 538 (590)
Q Consensus 532 ~~l~sgs 538 (590)
..++-.+
T Consensus 319 di~~~~g 325 (395)
T PF08596_consen 319 DIFYWTG 325 (395)
T ss_dssp -EEEE-S
T ss_pred CEEEEeC
Confidence 8776554
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.026 Score=59.53 Aligned_cols=237 Identities=15% Similarity=0.168 Sum_probs=148.9
Q ss_pred CeEEEEEccCCCEEEEEe-cCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE
Q 007768 345 AVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~ 422 (590)
....+...+++..+.... ....+.+.+............+ ..+..+.+.+... ..++....++.|.+.|..+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~--~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN--KVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC--eEEEecCCCCeEEEEcCccccee
Confidence 566777888885554443 2234555555522222222223 3334455555443 56777777899999998887776
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeC---CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEE
Q 007768 423 QEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILI 498 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~---Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~i 498 (590)
.....-. ....+.+.+++..+..+.. ++++.+.|-.+...+..+... ..+ ..+++.|+|..+++.. .++.|.+
T Consensus 110 ~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 110 GSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 6654222 5678999999987776655 688999998888888775432 233 8999999999766655 7799999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeEEEE-EecCCCcEEEEEEcCCCC
Q 007768 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~ 574 (590)
+|........ .............+.+.++|+|.++.+.... +.+...|..++..... +..-......+..+| .+
T Consensus 187 i~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-~g 264 (381)
T COG3391 187 IDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-AG 264 (381)
T ss_pred EeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-CC
Confidence 9976654332 1100011112334468999999977665543 5899999999887765 222221346678888 45
Q ss_pred CEEEEE-eCCCcEEE
Q 007768 575 SKVATC-GWDGLIKY 588 (590)
Q Consensus 575 ~~l~s~-g~Dg~I~i 588 (590)
..+... +..+.+.+
T Consensus 265 ~~~yv~~~~~~~V~v 279 (381)
T COG3391 265 KAAYVANSQGGTVSV 279 (381)
T ss_pred CEEEEEecCCCeEEE
Confidence 455444 23344443
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.90 E-value=0.0045 Score=65.95 Aligned_cols=222 Identities=13% Similarity=0.154 Sum_probs=111.7
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 376 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~ 376 (590)
...-....|.++|+ +++++.++ ||...|+.. ...+... .+.-..++|.+. +.+|+-...+.|.|+.--+..
T Consensus 30 ~~~~~p~~ls~npn-gr~v~V~g-~geY~iyt~-~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPN-GRFVLVCG-DGEYEIYTA-LAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TT-SSEEEEEE-TTEEEEEET-TTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCC-CCEEEEEc-CCEEEEEEc-cCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccc
Confidence 34455789999999 88888855 677778774 2222221 134456889884 457777778899996332222
Q ss_pred EEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007768 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
....+.... .+-.+.. +.+|...+ ++.|.+||+.+++.+..+... +|..+.|++++.+++..+.+ .+.|+
T Consensus 101 ~~k~i~~~~--~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 101 VVKSIKLPF--SVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp TT-----SS---EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred cceEEcCCc--ccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 222333332 2222332 24455554 448999999999999998743 48999999999999988865 67887
Q ss_pred ECCCC-----------cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007768 457 EFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 457 dl~~~-----------~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
+.+.. ..+..+.. ....|.+.+|..+ .|+-.+.. .|+. +..+... .+..+ ..++.-+
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~l-----d~~~yll 238 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHL-----DKPLYLL 238 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE------SS--EEE
T ss_pred EecchhcccccccCchhceEEEEE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEc-----CCceEEE
Confidence 76544 02222211 1457888888755 44443433 5555 2222211 11111 1223335
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 526 NFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.+.+..+.|+..+.++.|..+.+.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEccCCEEEEEECCCCEEEEEEC
Confidence 566666677777777777766553
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.88 E-value=0.0033 Score=66.74 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=68.1
Q ss_pred EEEECCCC--cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007768 454 RVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 454 ~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
++|++... +.+.....+....+.+++++|+...|+.|+.||.|.+||...+....... .-....++|+|+|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka-------~~~P~~iaWHp~g 311 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA-------EFIPTLIAWHPDG 311 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee-------cccceEEEEcCCC
Confidence 45665433 33444445788899999999999999999999999999987653221111 2335579999999
Q ss_pred CEEEEEcCCCcEEEEeCC
Q 007768 532 RFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 532 ~~l~sgs~dg~I~iwd~~ 549 (590)
.++++|+..|.|.+||+.
T Consensus 312 ai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 312 AIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cEEEEEcCCceEEEEEee
Confidence 999999999999999974
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.012 Score=59.70 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=126.4
Q ss_pred EEccCCC-EEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc--
Q 007768 350 SFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-- 426 (590)
Q Consensus 350 ~fspdg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~-- 426 (590)
.|.++.. ++.+--..+.|.-|+..+++...............+.. . ..|+++. ..+.+++..++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~---~-g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDA---G-GRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecC---C-CeEEEEc--cccEEEeccCCceeEEeccc
Confidence 3555544 34444456788888887665433322222222222222 1 2333332 335566666555433221
Q ss_pred ---CcCCceeEEEEeCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc
Q 007768 427 ---QHLGAVNTITFVDSNRRFVTSSD-----------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 427 ---~h~~~V~~i~~~p~~~~l~s~s~-----------Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~ 492 (590)
......+.+.+.|+|.+.++... -|.|+.+|. .+..++.+ ..+...-+.|+|+|+++.|+.+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-cCcEEecCceEECCCCCEEEEEeC
Confidence 12245678888899877665544 133444443 33333333 234556678999999988877765
Q ss_pred C-CeEEEEEcCC--ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-cEEEEeCCCCeEEEEEecCCCcEEEEE
Q 007768 493 D-NQILIYSTRE--RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 493 d-g~I~iwd~~~--~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
. +.|.-|++.. ...-.....+......+..-.++...+|.+.+++...| .|.+|+.. ++++..+..+...+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4 7888888752 11111100011111134444577888898886555554 89999987 999999998877788999
Q ss_pred EcCCCCCEE-EEEeC
Q 007768 569 WHPLEQSKV-ATCGW 582 (590)
Q Consensus 569 ~sp~~~~~l-~s~g~ 582 (590)
|--.+.+.| +|+..
T Consensus 262 FgG~~~~~L~iTs~~ 276 (307)
T COG3386 262 FGGPDLNTLYITSAR 276 (307)
T ss_pred EeCCCcCEEEEEecC
Confidence 865333444 44433
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.78 E-value=0.0017 Score=68.80 Aligned_cols=114 Identities=13% Similarity=0.206 Sum_probs=80.0
Q ss_pred CCeEEEEEcc-CCCEEEEE----ecCCe----EEEEECCCCcE----EEEecCCCcceEEEEecCCCCCcEEEEEECCCe
Q 007768 344 KAVRDISFCN-DGTKFLTA----SYDKN----IKYWDTETGQV----IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 344 ~~V~~l~fsp-dg~~l~s~----s~Dg~----I~vWd~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
....++.|+. ++..+.+. +.+|. -++|++...+. +..+.....+.+++++++. ..++.|+.||.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E---~kLvlGC~DgS 282 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE---DKLVLGCEDGS 282 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc---ceEEEEecCCe
Confidence 3346677776 44555543 33343 34566655543 2344556677777777766 46999999999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 007768 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
|.+||...+... +....-..+.++|+|+|..|++|+..|.|.+||+.-..
T Consensus 283 iiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 283 IILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999999877332 22345567899999999999999999999999986443
No 347
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.75 E-value=0.0051 Score=70.08 Aligned_cols=232 Identities=13% Similarity=0.146 Sum_probs=134.7
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE
Q 007768 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~ 422 (590)
...|.++.|..++..++.+..+|.|.+-|.++......-.....+.+.+|+++. .+++..+..++|.+-+ .+..++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~De---e~l~liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDE---ELLALITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCC---cEEEEEeCCcEEEEEe-ccccch
Confidence 357999999999999999999999999999887765555556667778888765 4666666666665532 222222
Q ss_pred EEEcC-----cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-----c
Q 007768 423 QEYDQ-----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-----L 492 (590)
Q Consensus 423 ~~~~~-----h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-----~ 492 (590)
....- ..+....+-|-.....| -|+ .|.....+........... .....-++|+|--+|.++|+.. .
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hccccccccccccccceecccccceee-ecc-hhhhcccccccccccccch-hhccCCceEEEccCCcEEEEEEEeccCC
Confidence 22111 11222233332211111 111 1111111111111100000 1222346799999999999843 2
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc---CCCcEEEEeCCCCeEEEE----EecCCCcEE
Q 007768 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWKSCKVFRT----LKCHEGVCI 565 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~dg~I~iwd~~t~~~~~~----l~~h~~~V~ 565 (590)
...|++||... . ++... ....+.-.+++|-|.|.++++-. +++.|.+|. ++|-.... +......|.
T Consensus 221 ~RkirV~drEg-~-Lns~s----e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 221 TRKIRVYDREG-A-LNSTS----EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred ceeEEEecccc-h-hhccc----CcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchh
Confidence 27899999762 1 11111 11122233699999999998753 566899998 34433222 333344589
Q ss_pred EEEEcCCCCCEEEE---EeCCCcEEEc
Q 007768 566 GCEWHPLEQSKVAT---CGWDGLIKYW 589 (590)
Q Consensus 566 ~v~~sp~~~~~l~s---~g~Dg~I~iW 589 (590)
.++|+. ++.+|+. +.....|++|
T Consensus 294 ~L~Wns-~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 294 ELAWNS-NSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eeeecC-CCCceeeeecccccceEEEE
Confidence 999999 6778777 5555559998
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.053 Score=57.66 Aligned_cols=168 Identities=11% Similarity=0.126 Sum_probs=94.2
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc------eEEEEe-cC
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP------YVVKLN-PD 395 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~------~~~~~~-~~ 395 (590)
.|.||+. .|+++..+.--.+.|.++.|+.+ ..|++...||.++++|+. |+. .+..+... .+..+. ..
T Consensus 62 ~I~iys~--sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSS--SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECC--CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence 4999986 67777766544489999999875 456677789999999986 333 33222211 111111 11
Q ss_pred CCCCcEEEEEECCCeEEEEeCCCCc-eEEEE---cC-----cCC-ceeE-EEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 007768 396 DDKQNILLAGMSDKKIVQWDMNTKE-ITQEY---DQ-----HLG-AVNT-ITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~iwD~~t~~-~~~~~---~~-----h~~-~V~~-i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
...+ +++-..++.|++..--... ....+ .. +.. .+.. ..++.+....+....++.+.+.+-.....
T Consensus 136 ~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 136 YKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence 1122 3333445555554332221 11111 00 000 1111 23444445555555556666444222111
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
+ ...+++..|++||++++||.-..+|.+.+.+..-
T Consensus 213 --i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 213 --I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred --c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 1 2346899999999999999999999999887543
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.68 E-value=0.055 Score=59.46 Aligned_cols=241 Identities=14% Similarity=0.160 Sum_probs=136.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEecc--CCC--CeEEEEEccCCCEEEEEe------cCCeEEEEECCCCcEEEEe
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMG--HSK--AVRDISFCNDGTKFLTAS------YDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--h~~--~V~~l~fspdg~~l~s~s------~Dg~I~vWd~~t~~~~~~~ 381 (590)
+..++.++.|+.|.-.|. .+++.+..... +.. .+.+--.--++ .++.++ .+|.|..+|.++|+.+..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa-~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDA-KTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 346777888999999998 67777765542 111 11111111144 445443 2689999999999998876
Q ss_pred cCCCcce-------------------------------EEEEecCCCCCcEEEEEECC-----C-----------eEEEE
Q 007768 382 STGKIPY-------------------------------VVKLNPDDDKQNILLAGMSD-----K-----------KIVQW 414 (590)
Q Consensus 382 ~~~~~~~-------------------------------~~~~~~~~~~~~~lvsg~~d-----g-----------~I~iw 414 (590)
....... -.....+. ...+++.+..+ + .|.-.
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 5421110 00112222 22455555422 2 78888
Q ss_pred eCCCCceEEEEcCcCCce---------eEEEEeCCCC---EEEEEeCCCcEEEEECCCCcEEEE--------ee---cCC
Q 007768 415 DMNTKEITQEYDQHLGAV---------NTITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKY--------IS---EPH 471 (590)
Q Consensus 415 D~~t~~~~~~~~~h~~~V---------~~i~~~p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~--------~~---~~~ 471 (590)
|+++|+....++.....+ .-+.+..+++ .++.+..+|.+++.|-.+++.+.. .. .+.
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 999999988876422211 1122223565 677899999999999988877521 10 000
Q ss_pred C-Cc----------------------------eeEEEEcCCCCEEEEEEcC-----------------------------
Q 007768 472 M-HS----------------------------MPSISLHPNTNWLAAQSLD----------------------------- 493 (590)
Q Consensus 472 ~-~~----------------------------i~~i~~sp~g~~la~~s~d----------------------------- 493 (590)
. .+ -..++++|...++++...+
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 0 00 0125677766666655444
Q ss_pred ----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC
Q 007768 494 ----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 494 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
|.|.-+|+.+++..-....- .....+. +.-.+.+++.++.+|.++.+|.++|+.+..++...
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~-~p~~~~~-----l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKED-FPLWGGV-----LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCC-CCCCCcc-----eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 23444444444333222110 0000111 11145577888889999999999999999988654
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.67 E-value=0.0049 Score=64.77 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=120.2
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE-EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-----
Q 007768 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----- 418 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t----- 418 (590)
.|+.+.|+++..-|++|...|.|.||.+...+... .-... ..-..+.+. ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP--DLDYNFRRF---------SLNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc--ccCcccccc---------cccCCCcceEEehhhCCcc
Confidence 58899999999999999999999999876544332 00000 000010000 00111122233321
Q ss_pred ---C-ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-------CCCCceeEEEEcC-----
Q 007768 419 ---K-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------PHMHSMPSISLHP----- 482 (590)
Q Consensus 419 ---~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-------~~~~~i~~i~~sp----- 482 (590)
+ .+...+....++|++++.+.-| +++.|..+|.+.|.|+|.+..+..... .....++++.|..
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred cccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 1 2334455568999999998555 999999999999999999988766322 1233577777762
Q ss_pred CC---CEEEEEEcCCeEEEEEcCC----ceeecccccccCcccccceEEEE-EcCC-C-------------------CEE
Q 007768 483 NT---NWLAAQSLDNQILIYSTRE----RFQLNKKKRFAGHIVAGYACQVN-FSPD-G-------------------RFV 534 (590)
Q Consensus 483 ~g---~~la~~s~dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~v~~v~-~spd-g-------------------~~l 534 (590)
++ -.|++|+..|.+.+|.+.- .+.......... ..+.+..+. |+.+ | .-+
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~--~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTN--HDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecccc--CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 22 4788999999999998741 111111111101 122333222 3221 0 123
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcC----CCCCEEEEEeCCCcEEEc
Q 007768 535 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP----LEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp----~~~~~l~s~g~Dg~I~iW 589 (590)
+....+..++++...+.+..++.....-.+..+.+.+ ..+..|++-..+|.|+++
T Consensus 229 vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred EEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 3334466899999988887766653323444455531 145578888899999886
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.026 Score=59.96 Aligned_cols=191 Identities=17% Similarity=0.213 Sum_probs=97.8
Q ss_pred eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc------eEEEEcCcCCceeEEEEeC
Q 007768 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------ITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~------~~~~~~~h~~~V~~i~~~p 439 (590)
.|.||+.. |+.+..+.-.. ...+.+.+... ..|++-..||.+++||+.... .+....-....+..+.+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECC-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC
Confidence 36666543 44444443332 33444444332 357788899999999987332 1111111112222223333
Q ss_pred CCCEEEEEeCCCcEEEEE-CCCCcEEEEeec-C------CCC-ceeE-EEEcCCCCEEEEEEcCCeEEEEEcCCceeecc
Q 007768 440 SNRRFVTSSDDKSLRVWE-FGIPVVIKYISE-P------HMH-SMPS-ISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 509 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwd-l~~~~~~~~~~~-~------~~~-~i~~-i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~ 509 (590)
+| .++. ..++.+.+.. +..+...+.+.. + +.. .... ..++.+....+....++.|.+.+......
T Consensus 138 ~G-ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 138 NG-IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred CC-EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 44 3322 2344444432 222211111111 0 000 0111 23444455555555556666444322111
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC-CCcEEEEEEcC
Q 007768 510 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHP 571 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp 571 (590)
.. ..+.+..+++||+|++||.-..+|.+.+.+..-.+.+..+... ......+.|+-
T Consensus 213 ---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 213 ---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred ---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 11 1356888999999999999999999999987666677666654 34557788876
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.013 Score=60.15 Aligned_cols=171 Identities=6% Similarity=0.124 Sum_probs=101.0
Q ss_pred cEEEEecCCCCeeEEEecc-CCCCeEEEE---EccC----CCEEEEEec----------CCeEEEEECCCC-----cE--
Q 007768 323 KVKIWDVVNSGKCMRTYMG-HSKAVRDIS---FCND----GTKFLTASY----------DKNIKYWDTETG-----QV-- 377 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~-h~~~V~~l~---fspd----g~~l~s~s~----------Dg~I~vWd~~t~-----~~-- 377 (590)
.|+|.|. .+.+.+.++.- ....+.+++ |..+ ..+|+.|+. .|.|.++++... +.
T Consensus 3 ~i~l~d~-~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDP-TTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEET-TTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeC-CCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4666766 34444444332 223344443 3322 456766643 289999999884 22
Q ss_pred EEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc-eEEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007768 378 IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~-~~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
+........+.+++.. . ..++++. .+.|++|++...+ +...-.. ....+.++... ++++++|..-..|.+
T Consensus 82 i~~~~~~g~V~ai~~~--~---~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--N---GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEESS-EEEEEEE--T---TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEeecCcceEhhhh--C---CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 2233334444444443 2 2344443 5899999998877 4443221 22356666665 669999999898998
Q ss_pred EECCC-CcEEEEe-ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 456 WEFGI-PVVIKYI-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 456 wdl~~-~~~~~~~-~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
+.++. ...+..+ .......++++.+-++++.++++..+|.|.++...
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 86554 2223333 33445568888888666799999999999999875
No 353
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.65 E-value=0.015 Score=54.95 Aligned_cols=215 Identities=15% Similarity=0.140 Sum_probs=121.8
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEE-CCCeEEEEeCCC--CceEEEEc-----C
Q 007768 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNT--KEITQEYD-----Q 427 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~t--~~~~~~~~-----~ 427 (590)
.++.+--..+.|.-||+.+.+..+.-.... +.+-.+.|.......+++++ ..-.|.-||... .....++. .
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p-~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP-PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC-cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 344444445777779988766655433322 23333333333334455544 344556688432 23333321 1
Q ss_pred cCCceeEEEEeCCCCEEEEEeC---------CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEE-EcCCeEE
Q 007768 428 HLGAVNTITFVDSNRRFVTSSD---------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQIL 497 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~---------Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~-s~dg~I~ 497 (590)
.....+.-..+|+|++++-.-. .|.++.|-...... .+. ..-.--..++|+.+.+.+... +.+-.|.
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~--~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE--LIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCce--eee-hhccCCccccccccCcEEEEEccCceEEe
Confidence 2345667778899988553322 24455554432221 111 112233567888777665544 5556676
Q ss_pred EEE--cCCceeecccccc--------cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEE
Q 007768 498 IYS--TRERFQLNKKKRF--------AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 567 (590)
Q Consensus 498 iwd--~~~~~~~~~~~~~--------~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v 567 (590)
-|| ..++...++...+ ...... .+++..+|++.++.-..|+|...|..+|+.+..++.....|+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PD----Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPD----GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCC----cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 676 4444333222211 111112 24556689888888899999999999999999999999999999
Q ss_pred EEcCCCCCEEE
Q 007768 568 EWHPLEQSKVA 578 (590)
Q Consensus 568 ~~sp~~~~~l~ 578 (590)
+|--.+-..|+
T Consensus 260 cFgGkn~d~~y 270 (310)
T KOG4499|consen 260 CFGGKNLDILY 270 (310)
T ss_pred EecCCCccEEE
Confidence 99653334443
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00038 Score=74.71 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=99.9
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc
Q 007768 430 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 509 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~ 509 (590)
..|.--++...+.+++.|+.-|.|++|+-..+.....-.......+..++++++..++|+|+..|.|.+|-+........
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 33444455667889999999999999998776665554444555677788899999999999999999998876332221
Q ss_pred cccccCc-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eEEEEEecCCCcEEEEEEc
Q 007768 510 KKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 510 ~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~----~~~~~l~~h~~~V~~v~~s 570 (590)
...-..+ .+...|++++|++++..|++|+..|+|.+-.+.+. ...+.+-.-.+.|..+...
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1111111 12567999999999999999999999999888772 1122233345567666664
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.63 E-value=0.044 Score=58.47 Aligned_cols=242 Identities=14% Similarity=0.233 Sum_probs=124.9
Q ss_pred CeeEEEEcCCCCCEEEEE-eCCCc----EEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC----------
Q 007768 301 GVSAIRFFPKYGHLILSA-GMDTK----VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK---------- 365 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sg-s~Dg~----I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg---------- 365 (590)
.+..++++|+ +++||.+ +..|. |+++|+ .+++.+........ ...+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl-~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDL-ETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTT-SSEEEEEEEETTSSEEEEEEEET-TTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCC-CCEEEEEecCCCCceEEEEEEEC-CCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3446789999 6666544 44454 999999 56665543211111 22399999988887665443
Q ss_pred -eEEEEECCCCcE--EEEecCCCcce-EEEEecCCCCCcEEEEEECC---CeEEEEeCCCC----ceEEEEcCcCCce-e
Q 007768 366 -NIKYWDTETGQV--IRTFSTGKIPY-VVKLNPDDDKQNILLAGMSD---KKIVQWDMNTK----EITQEYDQHLGAV-N 433 (590)
Q Consensus 366 -~I~vWd~~t~~~--~~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~d---g~I~iwD~~t~----~~~~~~~~h~~~V-~ 433 (590)
.|.+|.+.+... ...+....... .+.+....++..+++..... ..|++.|+..+ .....+......+ .
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 378888877643 24444433333 44444444444455544443 35888898874 2233333333333 3
Q ss_pred EEEEeCCCCEEEEEe---CCCcEEEEECCCCcE---EEEeecCCCC--ceeEEEEcCCCCEEEEEE-cCC--eEEEEEcC
Q 007768 434 TITFVDSNRRFVTSS---DDKSLRVWEFGIPVV---IKYISEPHMH--SMPSISLHPNTNWLAAQS-LDN--QILIYSTR 502 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s---~Dg~I~iwdl~~~~~---~~~~~~~~~~--~i~~i~~sp~g~~la~~s-~dg--~I~iwd~~ 502 (590)
.+... .+.+++.+. ..+.|...++..... ...+. ++.. .+..+.. .+.+|+... .++ .|+++++.
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 34333 443444443 235677778877652 22332 3433 4555544 455555544 343 58888887
Q ss_pred -CceeecccccccCcccccceEEEEEcCCCCEEEE-Ec---CCCcEEEEeCCCCeEE
Q 007768 503 -ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS-GD---GEGKCWFWDWKSCKVF 554 (590)
Q Consensus 503 -~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s-gs---~dg~I~iwd~~t~~~~ 554 (590)
..... ..... . .+.+..+...+++..+.. .+ .-+.++.||+.+++..
T Consensus 358 ~~~~~~-~~~~p-~---~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 358 DGKESR-EIPLP-E---AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -TEEEE-EEESS-S---SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCcEEe-eecCC-c---ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 33222 22211 1 233444554555554432 22 2457888888887754
No 356
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00025 Score=77.01 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=122.6
Q ss_pred EEEEEccCCCEEEEEec----CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE
Q 007768 347 RDISFCNDGTKFLTASY----DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 347 ~~l~fspdg~~l~s~s~----Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~ 422 (590)
+-.+|+|...+|++++. .|.|.|| .++|++-+...-+-...+++|+|.. .+|+.|-.-|.+.+|...+.+.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~---~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEE---FVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHH---HHHhhccccceeEEEecCCceee
Confidence 34579998889988865 4788887 4666655554444445567777754 56788888899999999888777
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee--c-CCCCc--eeEEEEcCCCC------EEEEEE
Q 007768 423 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS--E-PHMHS--MPSISLHPNTN------WLAAQS 491 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~--~-~~~~~--i~~i~~sp~g~------~la~~s 491 (590)
.....|..+|..+.|+++|..++++..-|.|.+|.+.....+.... . ..... ..|..+++++. ..++.+
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 7777899999999999999999999999999999876332222211 0 01111 33444455532 123333
Q ss_pred cCCeEE-EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe
Q 007768 492 LDNQIL-IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 492 ~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
.++.+- .++.+.. .. .... .-.=.|+|..++.++.+|+|+-.| ..|++....+
T Consensus 175 De~alD~~fnwk~~--------~a----~rs~-~ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k 228 (1416)
T KOG3617|consen 175 DESALDEPFNWKES--------LA----ERSD-EKSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHK 228 (1416)
T ss_pred chhhhcccccCccc--------hh----hccc-cccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEE
Confidence 333222 2222110 00 0000 011246788888888999998887 4555554444
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.54 E-value=0.027 Score=58.80 Aligned_cols=244 Identities=16% Similarity=0.225 Sum_probs=122.0
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC----------------
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG---------------- 384 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~---------------- 384 (590)
.+.+.|||+ .+++.. .+......+....|+|+|+.|+... ++.|.+++..++...+....+
T Consensus 22 ~~~y~i~d~-~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDI-ETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEET-TTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEec-CCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 467889999 444333 3333367899999999999998885 589999999888555433222
Q ss_pred --CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC---CceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007768 385 --KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL---GAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 385 --~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~---~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
.....+.|+|++. .+++.-..+..|..+.+- .+.... ..+..+.+---|.-... -.+.|+|+.
T Consensus 99 v~~~~~~~~WSpd~~--~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~ 166 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSK--YLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLA 166 (353)
T ss_dssp TSSSSBSEEE-TTSS--EEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESS
T ss_pred ccccccceEECCCCC--EEEEEEECCcCCceEEee------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECC
Confidence 1123455666543 444444445544444321 111111 12334443222221111 136678887
Q ss_pred CCcEEE-Eee---cCCCCceeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeccccc-ccCcccccceEEEEEc-
Q 007768 460 IPVVIK-YIS---EPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFS- 528 (590)
Q Consensus 460 ~~~~~~-~~~---~~~~~~i~~i~~sp~g~~la~~s~d-----g~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~v~~s- 528 (590)
+++... ... ......+..+.|.+++..|++.-.+ -.+.++|..++........ ..+-. . ....+.|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-~-~~~~~~~~~ 244 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-D-VYDPPHFLG 244 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-S-SSSEEEE-T
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-e-eeccccccc
Confidence 765432 111 2356678999999999844444332 2355667655332211111 11111 1 11134444
Q ss_pred CCCC-EEEEEcCCCc--EEEEeCCCCeEEEEEecCCCcEEE-EEEcCCCCCEEEEEeC
Q 007768 529 PDGR-FVMSGDGEGK--CWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGW 582 (590)
Q Consensus 529 pdg~-~l~sgs~dg~--I~iwd~~t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~ 582 (590)
+++. +|.....+|. |++++...+... .+....-.|.. +.|.+.+..+.+++..
T Consensus 245 ~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 245 PDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp TTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred CCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecC
Confidence 5544 5555556665 566666666533 44434445644 5677754545555554
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.50 E-value=0.0051 Score=69.20 Aligned_cols=142 Identities=15% Similarity=0.212 Sum_probs=96.4
Q ss_pred cEEEE-EECCCeEEEEeCCCCceEEEEcCcCCc-eeEEEEeC-----CCCEEEEEeCCCcEEEEECCCCc--EEEEe--e
Q 007768 400 NILLA-GMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVD-----SNRRFVTSSDDKSLRVWEFGIPV--VIKYI--S 468 (590)
Q Consensus 400 ~~lvs-g~~dg~I~iwD~~t~~~~~~~~~h~~~-V~~i~~~p-----~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~--~ 468 (590)
++|+. ......|+..|+..|+++..+..|... |..++-.. .....++|-.+..|..||.|... .+... .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 34333 345688999999999999999887654 55554321 12345667778889999998753 22111 1
Q ss_pred cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
........|++-+.+| +||+|+.+|.|++||-.. .+....+.+. ..+|..|+.+.||++|++.+ +..|.|++.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---~~AKT~lp~l--G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---KRAKTALPGL--GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---hhhhhcCCCC--CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1234456777776655 799999999999999432 1223334443 67899999999999998776 446777775
No 359
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.50 E-value=0.054 Score=60.87 Aligned_cols=281 Identities=14% Similarity=0.184 Sum_probs=146.5
Q ss_pred CCCeeEEEEcCC--CCC---EEEEEeCCCcEEEEecCCCCeeEEEe-cc---CCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 299 TKGVSAIRFFPK--YGH---LILSAGMDTKVKIWDVVNSGKCMRTY-MG---HSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 299 ~~~V~~l~~sp~--~g~---~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~---h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
...|.|+.++|- ..+ +++.|..+..+.+--...+...+... .+ -...|.-..|-.|..+|+++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 467999999975 334 88999887776665543333333222 11 2234555666667889999999999876
Q ss_pred E--ECCCCcEEE--EecCCCcceEE-EEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEE-EeC-CC-
Q 007768 370 W--DTETGQVIR--TFSTGKIPYVV-KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT-FVD-SN- 441 (590)
Q Consensus 370 W--d~~t~~~~~--~~~~~~~~~~~-~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~-~~p-~~- 441 (590)
+ |..+|+.-. ....+..+..+ .|.... . . -+.+.+|.-..+|..+..-....+. ...+..++ |+. ..
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~-~-t-~vfa~sdrP~viY~~n~kLv~spls--~kev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKS-R-T-AVFALSDRPTVIYSSNGKLVYSPLS--LKEVNHMCPFNSDAYP 684 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCC-c-e-EEEEeCCCCEEEEecCCcEEEeccc--hHHhhhhcccccccCC
Confidence 6 445554322 22334334333 333322 2 2 3333344544455443221111111 11111111 221 12
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC--------------CeEEEEEcCCceee
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--------------NQILIYSTRERFQL 507 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d--------------g~I~iwd~~~~~~~ 507 (590)
..++++ ..+.+++.-++.-..+..-.-+.......+++.+....+++.+.- ..++++|-++-..+
T Consensus 685 d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 685 DSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred ceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 234444 345677776654333222223566677888888855555554421 23566666553322
Q ss_pred cccccccCcccccceEEEEEcCC-CCEEEEEcC----------CCcEEEEeCCCCeEEEEEecC--CCcEEEEEEcCCCC
Q 007768 508 NKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCH--EGVCIGCEWHPLEQ 574 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~----------dg~I~iwd~~t~~~~~~l~~h--~~~V~~v~~sp~~~ 574 (590)
. ...+......-.++++.|..| +.++++|.. .|+|.+|.+..+..+..+..+ .+.|.++.-. ++
T Consensus 764 ~-~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ng 840 (1096)
T KOG1897|consen 764 S-SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NG 840 (1096)
T ss_pred e-eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CC
Confidence 2 222222223345666778887 778888863 588888887764333333222 3455655443 45
Q ss_pred CEEEEEeCCCcEEEcC
Q 007768 575 SKVATCGWDGLIKYWD 590 (590)
Q Consensus 575 ~~l~s~g~Dg~I~iWD 590 (590)
.+||.-+ ..|++|+
T Consensus 841 kllA~In--~~vrLye 854 (1096)
T KOG1897|consen 841 KLLAGIN--QSVRLYE 854 (1096)
T ss_pred eEEEecC--cEEEEEE
Confidence 5555544 4677653
No 360
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.50 E-value=0.09 Score=51.45 Aligned_cols=198 Identities=11% Similarity=0.070 Sum_probs=120.4
Q ss_pred cEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCceEEEEcCcC-CceeEEEEeCCCCEEEEEeCCCc
Q 007768 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHL-GAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~-~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+.+.++.+......-.+....+ +.++-+.+.-| .|+.+|+.+++......-.. ----.|+.. +++.+..+=.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 4455565555555444444211 24566666555 79999999998776543221 223345555 3445566677899
Q ss_pred EEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
..+||..+.+.+..+..+ ..-..++ .++..|+.......|+++|..+......+........-..+..+.|- +|.
T Consensus 112 ~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999998888888654 3455666 46777888777889999998765544444433333233445566665 566
Q ss_pred EEEEEcCCCcEEEEeCCCCeEEEEEec------------C---CCcEEEEEEcCCCCCEEEEE
Q 007768 533 FVMSGDGEGKCWFWDWKSCKVFRTLKC------------H---EGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~l~~------------h---~~~V~~v~~sp~~~~~l~s~ 580 (590)
..|=.=....|...|..+|+.+..+.. + ....+.++|.|..+.+++||
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666666677899999999999887742 1 24689999999667677776
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.07 Score=51.96 Aligned_cols=209 Identities=15% Similarity=0.126 Sum_probs=121.1
Q ss_pred EEEEEccC-CCEEEEEecCCe-EEEEECCCCcEEEEecCCC---cceEEEEecCCCCCcEEEEEEC-----CCeEEEEeC
Q 007768 347 RDISFCND-GTKFLTASYDKN-IKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDM 416 (590)
Q Consensus 347 ~~l~fspd-g~~l~s~s~Dg~-I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~-----dg~I~iwD~ 416 (590)
..|+|+|. ..-++.+-.-|+ ..++|....+...++.... ..-.-.|++++ .+|++.-. -|.|-+||.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG---~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG---RLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC---cEEEeecCCCCCCCceEEEEec
Confidence 45677773 344445544443 5678888887666554322 22234455544 46666543 378999999
Q ss_pred CCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeC------------------CCcEEEEECCCCcEEEEeecC---CCCc
Q 007768 417 NTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSD------------------DKSLRVWEFGIPVVIKYISEP---HMHS 474 (590)
Q Consensus 417 ~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~------------------Dg~I~iwdl~~~~~~~~~~~~---~~~~ 474 (590)
+.+ +.+.++..|.-.-..+.|.+||+.++.+.. .-++.+.|..++..+.....+ +.-+
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 865 566778888888889999999999887642 113344443444443333222 4556
Q ss_pred eeEEEEcCCCCEEEEEEcCCeE-----EEEEcCCceeecccccc--cCcccccceEEEEEcCCCCEEEEEcCC-CcEEEE
Q 007768 475 MPSISLHPNTNWLAAQSLDNQI-----LIYSTRERFQLNKKKRF--AGHIVAGYACQVNFSPDGRFVMSGDGE-GKCWFW 546 (590)
Q Consensus 475 i~~i~~sp~g~~la~~s~dg~I-----~iwd~~~~~~~~~~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~d-g~I~iw 546 (590)
|..+...++|..++.|-..|.- .+=-...+..+..+..- .-.....++-+|+.+.+..+++..+-. +...+|
T Consensus 228 iRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~ 307 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW 307 (366)
T ss_pred eeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence 8888888888776665443321 00000111111111000 000124567778888776677666644 457889
Q ss_pred eCCCCeEEEEEe
Q 007768 547 DWKSCKVFRTLK 558 (590)
Q Consensus 547 d~~t~~~~~~l~ 558 (590)
|..+|..+..-.
T Consensus 308 da~tG~vv~~a~ 319 (366)
T COG3490 308 DAATGAVVSEAA 319 (366)
T ss_pred EcCCCcEEeccc
Confidence 999999876543
No 362
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.0002 Score=67.06 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=88.3
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007768 443 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
.+...+.++.|+-++++..+.......-+... .....-+..+++|+.+|.|.+|............... .....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~ 105 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESID 105 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcc---cccce
Confidence 45667788999988886543322211111111 1222235679999999999999876221111111111 12223
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC-CcEEEEEEcCCCCCEEEEE--eCCCcEEEcC
Q 007768 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATC--GWDGLIKYWD 590 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~--g~Dg~I~iWD 590 (590)
+.|.--.++.+.++++.+|.|+.|++.-.+.+.....|. .++.....+. ...+|+.+ |.|..++.||
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcc
Confidence 334444567789999999999999999999888888787 4555555554 45567777 7788888885
No 363
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.47 E-value=0.12 Score=53.92 Aligned_cols=262 Identities=14% Similarity=0.194 Sum_probs=135.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE-Eecc-------C---------CCCeEEEEEccCCCEEEEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMG-------H---------SKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~-------h---------~~~V~~l~fspdg~~l~s~ 361 (590)
...+....|+|+ |+.|+-.. ++.|.++++. .+...+ +..+ - -+.-..+.|||||++|+..
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~-~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLA-TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESST-TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECC-CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 677899999999 88887776 5789999873 343332 2222 0 1123568899999999987
Q ss_pred ecC-CeEEEEEC---CCCcEEEEecCCCcceEEEEe-cCCCCCcEEEEEECCCeEEEEeCCCCceEE-E-E---cCcCCc
Q 007768 362 SYD-KNIKYWDT---ETGQVIRTFSTGKIPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTKEITQ-E-Y---DQHLGA 431 (590)
Q Consensus 362 s~D-g~I~vWd~---~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~-~-~---~~h~~~ 431 (590)
..| ..|..+.+ ..... ..+....+. |.....+ ..-.+.++|+.+++... . . ..-..-
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YPk~G~~n------p~v~l~v~~~~~~~~~~~~~~~~~~~~~~y 185 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDS-------QYPEVESIRYPKAGDPN------PRVSLFVVDLASGKTTELDPPNSLNPQDYY 185 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--BTTS---------EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred EECCcCCceEEeeccCCccc-------cCCcccccccCCCCCcC------CceEEEEEECCCCcEEEeeeccccCCCccC
Confidence 665 33333322 11110 011222221 1111111 01246678888876532 1 1 123446
Q ss_pred eeEEEEeCCCCEEEEE--eCCC---cEEEEECCCCcEEEEeecCCCCc---eeEEEEc-CCCC-EEEEEEcCCe--EEEE
Q 007768 432 VNTITFVDSNRRFVTS--SDDK---SLRVWEFGIPVVIKYISEPHMHS---MPSISLH-PNTN-WLAAQSLDNQ--ILIY 499 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~--s~Dg---~I~iwdl~~~~~~~~~~~~~~~~---i~~i~~s-p~g~-~la~~s~dg~--I~iw 499 (590)
+..+.|.+++..|+.. ..+. .+.++|..++............. ...+.+. +++. +|.....+|. |.++
T Consensus 186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 8899999998844443 2222 46667776654433332222222 2345554 5554 5555556665 5555
Q ss_pred EcCCceeecccccccCcccccce-EEEEEcCCCCEEE-EEcC----CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCC
Q 007768 500 STRERFQLNKKKRFAGHIVAGYA-CQVNFSPDGRFVM-SGDG----EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 573 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~v-~~v~~spdg~~l~-sgs~----dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~ 573 (590)
+...+... ....|. -.| ..+.++++++.|+ ++.. ...|+.-++..+..+..+....+....+.|+|++
T Consensus 266 ~~~~~~~~---~lT~G~---~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 266 DLDGGKPR---QLTSGD---WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp ETTSSEEE---ESS-SS---S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred ccccccee---ccccCc---eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 55554321 111121 223 2477888877664 4544 2356667777334445555444433689999965
Q ss_pred CCEEEEEeC
Q 007768 574 QSKVATCGW 582 (590)
Q Consensus 574 ~~~l~s~g~ 582 (590)
..++.+++.
T Consensus 340 ~y~v~~~s~ 348 (353)
T PF00930_consen 340 KYYVDTYSG 348 (353)
T ss_dssp SEEEEEEES
T ss_pred CEEEEEEcC
Confidence 555666654
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.43 E-value=0.00036 Score=45.36 Aligned_cols=38 Identities=39% Similarity=0.740 Sum_probs=34.5
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd 328 (590)
+++..+..|...|.+++|++. +.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 467788899999999999998 78999999999999996
No 365
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.41 E-value=0.15 Score=49.96 Aligned_cols=200 Identities=14% Similarity=0.186 Sum_probs=109.3
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccC-CCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
+.+.+-...|+.|.|.|+.+.++++....+.|...+. .++.++.+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3556666779999999986778888888888877776 57778776543 35678899988887777666689999998
Q ss_pred CCCCc------EEEEecCC------CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC---CceEEE--E------cCc
Q 007768 372 TETGQ------VIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---KEITQE--Y------DQH 428 (590)
Q Consensus 372 ~~t~~------~~~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t---~~~~~~--~------~~h 428 (590)
+.... ....+..+ ....-+++.+... . |+++-...-..+|.+.. ...+.. . ...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~--~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN--R-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTT--E-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCC--E-EEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 83321 11222221 2235677766542 3 44455555555555443 111111 1 123
Q ss_pred CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCC--------CCceeEEEEcCCCCEEEEEEcCCeEEEE
Q 007768 429 LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPH--------MHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 429 ~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~--------~~~i~~i~~sp~g~~la~~s~dg~I~iw 499 (590)
...+.+++++|... +++....+..|.++| ..+..+..+.-.. ....-.|++.++|++.++ +.-+..++|
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 34578899998755 555666677888888 4555555543222 134678999999865554 556655554
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00063 Score=44.17 Aligned_cols=39 Identities=33% Similarity=0.617 Sum_probs=34.3
Q ss_pred CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 551 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 ~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++++..+..|...|.++.|++ ...++++++.||.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456777888999999999999 568999999999999997
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0074 Score=63.09 Aligned_cols=145 Identities=16% Similarity=0.246 Sum_probs=104.3
Q ss_pred CCCEEE-EEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcE----EEEEECCCeEEEEeCCCCce--EEEEc
Q 007768 354 DGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI----LLAGMSDKKIVQWDMNTKEI--TQEYD 426 (590)
Q Consensus 354 dg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----lvsg~~dg~I~iwD~~t~~~--~~~~~ 426 (590)
+.++|+ ++.....|+-.|++.|+++.....+..+..+.+.++.....+ -++|-++..|.-||+|-... +....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 444444 455557788889999999999988888777777776543322 46788899999999984322 22222
Q ss_pred Cc----CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 427 QH----LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 427 ~h----~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
.| .....|++-..+| ++++||.+|.|++||- .+...++...+...+|..|..+.+|++|++.+ +..+.+.++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22 1234555555554 8999999999999996 66666666667888999999999999988765 666766665
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.36 E-value=0.014 Score=62.19 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=78.7
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007768 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~ 507 (590)
.......+.++|+++.+++ +.+|.-.|+......... .+.-..++|.+.+ .+|+-...+.|.|+.--.....
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc------cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 4445789999999998888 456777888743333322 2345678898854 4666677888999732221111
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 508 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
+.+... ..+..+-. |.+|+..+.+ .|.+|||.+++.+..+... .|..+.|++ ++.+++..+.+ .|.
T Consensus 103 ---k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 103 ---KSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKD-SIY 168 (443)
T ss_dssp --------S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S--SEE
T ss_pred ---eEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCC-eEE
Confidence 111111 11222322 8777777655 8999999999999999854 389999999 67788888765 455
Q ss_pred Ec
Q 007768 588 YW 589 (590)
Q Consensus 588 iW 589 (590)
|+
T Consensus 169 il 170 (443)
T PF04053_consen 169 IL 170 (443)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 369
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.33 E-value=0.23 Score=50.18 Aligned_cols=273 Identities=12% Similarity=0.114 Sum_probs=125.7
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc--C---CCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG--H---SKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--h---~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
-...+..|.|... .+-+++|. .+.| +.....++.-..... . .-...+|.|.. ...+++ +..+ +.+...
T Consensus 15 t~~~l~dV~F~d~-~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g-~ll~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDP-NHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPG-LLLHTT 87 (302)
T ss_dssp -SS-EEEEEESSS-S-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETT-EEEEES
T ss_pred CCCceEEEEEecC-CEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCc-eEEEec
Confidence 3457899999855 55566554 4543 444233332222111 1 12356777754 334444 4444 444444
Q ss_pred CCCcEEEEecC----CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCCCCEEEEE
Q 007768 373 ETGQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 373 ~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
+.|+.-..+.. ......+.... . ..+...+..|.|+. ....|+. ......-.+.+..+..++++++++++
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~--~--~~~~l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs 162 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALG--D--GSAELAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS 162 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEE--T--TEEEEEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcC--C--CcEEEEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE
Confidence 55544333321 11222222221 1 12333344454432 1222322 22233455778899999999988888
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEc-CCceeecccccccCcccccceEEEE
Q 007768 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST-RERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
+.-..+.-||-....-.. ........|.+|.|.|++.+.+++ ..|.|++=+. ........ .........-.+..++
T Consensus 163 ~~G~~~~s~~~G~~~w~~-~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a 239 (302)
T PF14870_consen 163 SRGNFYSSWDPGQTTWQP-HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLA 239 (302)
T ss_dssp TTSSEEEEE-TT-SS-EE-EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEE
T ss_pred CcccEEEEecCCCccceE-EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEEE
Confidence 766666678865432222 222456789999999998776654 8888888772 22222211 1111112223377899
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec---CCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 527 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
|.+++...++|+.. .| +.....|+.-...+. -....+.+.|.+ . ..-...|.+|.|--|
T Consensus 240 ~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 240 YRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp ESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE-STTEEEEE
T ss_pred ecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcC-C-CceEEECCCcEEEEe
Confidence 99998877776644 33 344556665555543 234578888876 2 356666789988655
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.1 Score=53.00 Aligned_cols=217 Identities=13% Similarity=0.179 Sum_probs=122.6
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC--
Q 007768 306 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-- 383 (590)
Q Consensus 306 ~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-- 383 (590)
.|.++.+.++.+--..+.|.-|+.. .+ ..+.+. +.+.+.++..-..+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~-~g-~~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPE-TG-KKRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCC-cC-ceEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 4777755577777778888888873 22 222332 2333455555445555666543 466677666655333221
Q ss_pred -C---CcceEEEEecCCCCCcEEEEEECC------------CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007768 384 -G---KIPYVVKLNPDDDKQNILLAGMSD------------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 384 -~---~~~~~~~~~~~~~~~~~lvsg~~d------------g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
+ ....-..+.+++ . +..+... |.|+.+|. .+..+..+..+...-+.|+|+|+++.|+.+
T Consensus 106 ~~~~~~r~ND~~v~pdG---~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 106 DGLPLNRPNDGVVDPDG---R-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCCcCCCCceeEcCCC---C-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 1 122234444443 2 3333322 34555554 466666666667778999999999887777
Q ss_pred eC-CCcEEEEECCC------CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC-eEEEEEcCCceeecccccccCcccc
Q 007768 448 SD-DKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 448 s~-Dg~I~iwdl~~------~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
.. .+.|.-|++.. ............+..-.++...+|.+.+++..+| .|.+|+.. +..+...... .
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP-----~ 254 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP-----V 254 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC-----C
Confidence 55 47788887752 1111222222445667788888888876555554 89999887 4444333221 1
Q ss_pred cceEEEEE-cCCCCEEEEEc
Q 007768 520 GYACQVNF-SPDGRFVMSGD 538 (590)
Q Consensus 520 ~~v~~v~~-spdg~~l~sgs 538 (590)
..+.+++| .|+.+.|++.+
T Consensus 255 ~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCccceEeCCCcCEEEEEe
Confidence 33445666 34445544433
No 371
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.30 E-value=0.091 Score=51.53 Aligned_cols=196 Identities=14% Similarity=0.227 Sum_probs=112.5
Q ss_pred ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCc-CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc---
Q 007768 387 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--- 462 (590)
Q Consensus 387 ~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--- 462 (590)
...+.+.++. ..++++....+.|..++. +|+++..+.-. .+-.-.|++..++.++++.-.++.+.++++....
T Consensus 24 ~SGLTy~pd~--~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDT--GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTT--TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCCC--CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 4566666644 478888888999999997 47777776533 3567889998777666665568999999883321
Q ss_pred ---EEEEee--c--CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC---ceeecc--ccccc-CcccccceEEEEEcC
Q 007768 463 ---VIKYIS--E--PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE---RFQLNK--KKRFA-GHIVAGYACQVNFSP 529 (590)
Q Consensus 463 ---~~~~~~--~--~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~---~~~~~~--~~~~~-~~~~~~~v~~v~~sp 529 (590)
....+. . .+...+-.++|+|.++.|+++-...-..+|.+.. ...+.. ...+. .......+..++++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 112222 1 2445689999999988888887777777777654 111110 00111 111122356788988
Q ss_pred C-CCEEEEEcCCCcEEEEeCCCCeEEEEEecCC---------CcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 530 D-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE---------GVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 530 d-g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~---------~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
. |.+++..+....|..+| .+|+++..+.-.. ..--+|+|.+ ++. |...+.-+...+
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~ 246 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYR 246 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T---EEEEETTTEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCC-EEEEcCCceEEE
Confidence 5 56677778888999999 7888877665332 2467899998 554 444445544443
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0093 Score=62.39 Aligned_cols=141 Identities=14% Similarity=0.213 Sum_probs=97.7
Q ss_pred cEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE-------EEEEeCCCcEEEEECCCCcE-EEEeecC-
Q 007768 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-------FVTSSDDKSLRVWEFGIPVV-IKYISEP- 470 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~-------l~s~s~Dg~I~iwdl~~~~~-~~~~~~~- 470 (590)
-++..+.....|+..|+..|+++.++.-+.. |+-+.+.|+.+. -+.|-.+..|+-||.+.... .......
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4566777788999999999999999987776 777888876542 34566788899999875432 1111111
Q ss_pred ---CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 471 ---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 471 ---~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
......|++-..+ .++++|+.+|.|++||-. +. .....+.+. ...|..|..+.+|++|++.+ +..|.+.+
T Consensus 426 qy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri-~~--~AKTAlPgL--G~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRI-GR--RAKTALPGL--GDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ccccccccceeeecCC-ceEEEeecCCcEEeehhh-hh--hhhhccccc--CCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 2233455555544 489999999999999972 22 222334444 56788899999999988766 44666666
Q ss_pred C
Q 007768 548 W 548 (590)
Q Consensus 548 ~ 548 (590)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.24 E-value=0.023 Score=47.70 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=73.7
Q ss_pred eeEEEEcC---CCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 302 VSAIRFFP---KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 302 V~~l~~sp---~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
|++|+++. ++.+-|++|+.|..|+||+- ...+..+.. ...|.+++-... ..|+.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 67777765 33478999999999999974 456666654 455777776655 57999999999999975 4455
Q ss_pred EEecCCCcceEEEE-ecCCCCCcEEEEEECCCeEE
Q 007768 379 RTFSTGKIPYVVKL-NPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 379 ~~~~~~~~~~~~~~-~~~~~~~~~lvsg~~dg~I~ 412 (590)
..++..+.+.++.+ ..+.+...-|++|-++|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55555555555444 44445556799999999874
No 374
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0062 Score=65.69 Aligned_cols=116 Identities=9% Similarity=0.135 Sum_probs=85.4
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC-CCcce-EEEEecCCCCCcEEEEEECCCeEEEEeCCCC
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~ 419 (590)
|...|.--+++..+.+++.|+.-|.+.+|+-..+.....-.. .+... +..+++.. .++++|+..|.|.++-+..+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e---~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE---YLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh---HhhhhhcCCceEEeehhhcc
Confidence 445566666777889999999999999999877765544332 22222 33344332 67889999999999988764
Q ss_pred ce---EE--EE-cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 007768 420 EI---TQ--EY-DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 420 ~~---~~--~~-~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~ 460 (590)
.. .. .. ..|...|++++|++++..|++|...|.|.+-.+..
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 11 11 24778999999999999999999999999988876
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.00089 Score=62.87 Aligned_cols=144 Identities=14% Similarity=0.157 Sum_probs=90.4
Q ss_pred EEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEe
Q 007768 314 LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLN 393 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~ 393 (590)
+|..-+.||.|.-+++.......+.-.-|...-..+. -+..+++|+.+|.|.+|...-..............+.+..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 4445566788877776322222222222332222222 3457899999999999988732222222233333445556
Q ss_pred cCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC-CceeEEEEeCCCCEEEEE--eCCCcEEEEECCC
Q 007768 394 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVDSNRRFVTS--SDDKSLRVWEFGI 460 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~-~~V~~i~~~p~~~~l~s~--s~Dg~I~iwdl~~ 460 (590)
|......+..+++.+|.|+.|++.-.+.+....+|. .++.....+..++.+.++ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 666666799999999999999999888877777777 555555555556666666 6666777776643
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.0026 Score=71.47 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=75.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
+.++.+.+.- +-.++.|+..|.|...|+..+-.....-..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.+
T Consensus 89 ~~~v~s~a~~---~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 89 AAGVISSAIV---VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred Ccceeeeeee---eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 3344444432 5678999999999998883221221222234678999999999999999999999999999999998
Q ss_pred EEecCCCcce--EEEEecCCCCCcEEEEEECCCeEE
Q 007768 379 RTFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 379 ~~~~~~~~~~--~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
+.+..+..+. ++..-..+ +...++++...|.++
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGSFW 200 (1206)
T ss_pred eeeeecCCccceEEEEEEeC-CCcEEEEccCCCceE
Confidence 8876544332 22222322 234688888778644
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.17 E-value=0.35 Score=51.58 Aligned_cols=230 Identities=11% Similarity=0.092 Sum_probs=117.0
Q ss_pred eEEEEEccCCCEEEEE-ecCC----eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC----------Ce
Q 007768 346 VRDISFCNDGTKFLTA-SYDK----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD----------KK 410 (590)
Q Consensus 346 V~~l~fspdg~~l~s~-s~Dg----~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d----------g~ 410 (590)
+..+.++|+|++||.+ +..| .|+++|+++|+.+...-.......+.|..++. .++.+...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~--~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGK--GFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSS--EEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCC--EEEEEEeCcccccccCCCCcE
Confidence 4467899999988855 3334 59999999998765432222222366665432 455554333 34
Q ss_pred EEEEeCCCCce--EEEEcCcCCc--eeEEEEeCCCCEEEEEeCC----CcEEEEECCCC----cEEEEeecCCCCceeEE
Q 007768 411 IVQWDMNTKEI--TQEYDQHLGA--VNTITFVDSNRRFVTSSDD----KSLRVWEFGIP----VVIKYISEPHMHSMPSI 478 (590)
Q Consensus 411 I~iwD~~t~~~--~~~~~~h~~~--V~~i~~~p~~~~l~s~s~D----g~I~iwdl~~~----~~~~~~~~~~~~~i~~i 478 (590)
|+.|.+.+... ...+...... ...+..++++++|+..+.. ..+++.++... .....+..........+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 78888877632 2344333332 5678889999987754332 34788888764 23334433233333333
Q ss_pred EEcCCCCEEEEEEc---CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE-EEcCCC--cEEEEeCCCCe
Q 007768 479 SLHPNTNWLAAQSL---DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEG--KCWFWDWKSCK 552 (590)
Q Consensus 479 ~~sp~g~~la~~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~-sgs~dg--~I~iwd~~t~~ 552 (590)
... .+.+++.... .+.|...++...........+..+.....+..+.. .+.+|+ ....++ .|+++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 333 3434443322 35677777765442111112222221223433433 344444 444443 58899998444
Q ss_pred EEEEEec-CCCcEEEEEEcCCCCCEEEEE
Q 007768 553 VFRTLKC-HEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 553 ~~~~l~~-h~~~V~~v~~sp~~~~~l~s~ 580 (590)
....+.. -.+.|..+...+....+.++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 4444443 334456665555334444433
No 378
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.002 Score=68.60 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=71.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeE-EEEEccCCCEEEEEecCCeEEEEECCCCcE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVR-DISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~-~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
.-.|.-+.|+|. -.++|.+..+|.|.+..+ + .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~-n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRL-N-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEe-c-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 345788999999 899999999999999998 3 777888887888887 999999999999999999999999999988
Q ss_pred EEEe
Q 007768 378 IRTF 381 (590)
Q Consensus 378 ~~~~ 381 (590)
+..+
T Consensus 97 l~~~ 100 (665)
T KOG4640|consen 97 LVSF 100 (665)
T ss_pred eecc
Confidence 8773
No 379
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.025 Score=60.10 Aligned_cols=140 Identities=21% Similarity=0.216 Sum_probs=86.4
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE-eCCCc--EEEEECCCCcEEEEeecCCCCceeEEEEcCCCC
Q 007768 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN 485 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~-s~Dg~--I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~ 485 (590)
..++++|+.+++...... ..+.-....|+|+|++|+.+ ..||. |+++|+......+ +.. ..+.-..-.|+|+|+
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc-CCccccCccCCCCCC
Confidence 469999999886554443 33444557899999987655 44554 6777877766433 322 222233668999999
Q ss_pred EEEEEEcC-C--eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-CCc--EEEEeCCCCeEEEEE
Q 007768 486 WLAAQSLD-N--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGK--CWFWDWKSCKVFRTL 557 (590)
Q Consensus 486 ~la~~s~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~--I~iwd~~t~~~~~~l 557 (590)
+++..+.. | .|.++++....... .++.+. ... ...|||||++|+..+. +|. |.+.|+.++..+..+
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~~r--iT~~~~---~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQVTR--LTFSGG---GNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCceeE--eeccCC---CCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 88877643 3 46667776554321 122221 111 4789999999987764 344 777777666544333
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.99 E-value=0.41 Score=47.77 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=113.0
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE--------
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-------- 425 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-------- 425 (590)
.++.|+.|+.+| |.++++........+.....+..+.+.+.- +.+++- .|+.|+++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~---~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL---NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc---CEEEEE-cCCccEEEEchhhcccccccccccccc
Confidence 578899999888 899998333222222222224455555433 233333 4599999999765433311
Q ss_pred ------cCcCCceeEEE--EeCCCCEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCCceeEEEEcCCCCEEEEEEc
Q 007768 426 ------DQHLGAVNTIT--FVDSNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 426 ------~~h~~~V~~i~--~~p~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~ 492 (590)
......+..++ -...+...++....+.|.+|.+... ...+.+. ....+..++|. ++.|+++..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEEEEeC
Confidence 11222344444 1133444455555568999888653 3445553 34678888888 667777764
Q ss_pred CCeEEEEEcCCceeecccccccCc--------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEE--EEecCCC
Q 007768 493 DNQILIYSTRERFQLNKKKRFAGH--------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLKCHEG 562 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~--~l~~h~~ 562 (590)
+ ...+.|+.++...... ..... .....+..+.. +++.+|++.+ ..-.+.|. .|++.+ .+.= ..
T Consensus 157 ~-~f~~idl~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~--~~g~fv~~-~G~~~r~~~i~W-~~ 229 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELL-DPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD--NIGVFVNK-NGEPSRKSTIQW-SS 229 (275)
T ss_pred C-ceEEEecCCCCceEEe-CccCCcchhhhcccCCCceEEEEe-CCceEEEEec--ceEEEEcC-CCCcCcccEEEc-CC
Confidence 4 4778888754332211 11110 01122322333 3456776543 23334443 443332 2322 22
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 563 VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+.++++.. .+|+..+.+ .|.||+
T Consensus 230 ~p~~~~~~~---pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 230 APQSVAYSS---PYLIAFSSN-SIEVRS 253 (275)
T ss_pred chhEEEEEC---CEEEEECCC-EEEEEE
Confidence 445666643 367666654 487774
No 381
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.97 E-value=0.53 Score=53.31 Aligned_cols=275 Identities=13% Similarity=0.114 Sum_probs=152.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCCC-CeeEEE--eccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-GKCMRT--YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~-~~~~~~--~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
|.-..|--+ .++|+++..||.+.-+-+... +..-.. ..--..++.--.|+..++.-+-|..|+-..+|.-+..-+.
T Consensus 586 Il~~~~e~d-~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 586 ILLTTFEGD-IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred eeeEEeecc-ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 444444444 789999999999987766322 221111 1123456666677775555555555676667765443344
Q ss_pred EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCCCCEEEEEeCC------
Q 007768 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDD------ 450 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~--~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D------ 450 (590)
..+........+.++.+.-. . .++....+.+.+.-+..-+ .++++. -......|++.+....+.+.+..
T Consensus 665 spls~kev~~~c~f~s~a~~-d-~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYP-D-SLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred eccchHHhhhhcccccccCC-c-eEEEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchh
Confidence 44444433444444443322 2 2333344566666554321 122322 23345667776644444443321
Q ss_pred --------CcEEEEECCCCcEEEEeecCCC---CceeEEEEcCC-CCEEEEEEc----------CCeEEEEEcCCceeec
Q 007768 451 --------KSLRVWEFGIPVVIKYISEPHM---HSMPSISLHPN-TNWLAAQSL----------DNQILIYSTRERFQLN 508 (590)
Q Consensus 451 --------g~I~iwdl~~~~~~~~~~~~~~---~~i~~i~~sp~-g~~la~~s~----------dg~I~iwd~~~~~~~~ 508 (590)
..++++|-++-..+........ .++.++.|..+ +.++++|+. .|.|.+|.......
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-- 819 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-- 819 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc--
Confidence 1366666655544433322122 23555568777 677887763 48888888765322
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
+.....+...+.+.++.. -+|++||.- +..|++|+|.+.+.++.-..|..++..+...- .+..++.|..=+.|.
T Consensus 820 -L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 820 -LELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSIT 893 (1096)
T ss_pred -eeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEE
Confidence 233334444454444332 156666544 55899999999987777667777787777776 666777777655544
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.93 E-value=0.42 Score=46.88 Aligned_cols=197 Identities=13% Similarity=0.137 Sum_probs=116.4
Q ss_pred eEEEecc-CCCCeEEEEEccCCCEEEEEecCC--eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeE
Q 007768 335 CMRTYMG-HSKAVRDISFCNDGTKFLTASYDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 335 ~~~~~~~-h~~~V~~l~fspdg~~l~s~s~Dg--~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 411 (590)
.+.++.. ...-...+.|..+|.++-+.+.-| .|+.+|+.+++.+...........-.+...++ .++...-.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeE
Confidence 3444432 233455788877888888887765 79999999999888776655443222222222 566677788999
Q ss_pred EEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC-C---CceeEEEEcCCCCEE
Q 007768 412 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-M---HSMPSISLHPNTNWL 487 (590)
Q Consensus 412 ~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-~---~~i~~i~~sp~g~~l 487 (590)
.+||..+.+.+.++.- .+.-..++ .++..|+.+.....|+++|..+......+.-.. . ..+.-+.+. +|...
T Consensus 113 f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999988888753 34556666 356777777777889999988776666654321 1 124445555 55555
Q ss_pred EEEEcCCeEEEEEcCCceeeccccc----------ccCcccccceEEEEEcCCCCEE-EEE
Q 007768 488 AAQSLDNQILIYSTRERFQLNKKKR----------FAGHIVAGYACQVNFSPDGRFV-MSG 537 (590)
Q Consensus 488 a~~s~dg~I~iwd~~~~~~~~~~~~----------~~~~~~~~~v~~v~~spdg~~l-~sg 537 (590)
|=.=....|...|..++........ ...+......+.|++.|....| ++|
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5555566677777776654432210 0011113457789998866554 555
No 383
>PHA02713 hypothetical protein; Provisional
Probab=96.93 E-value=0.12 Score=57.26 Aligned_cols=199 Identities=10% Similarity=0.017 Sum_probs=97.5
Q ss_pred CCCEEEEEecC------CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC-----eEEEEeCCCCceE
Q 007768 354 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEIT 422 (590)
Q Consensus 354 dg~~l~s~s~D------g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~iwD~~t~~~~ 422 (590)
++..++.||.+ ..+..||..+......-.............. ++.+.+.|+.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56677777754 3477888877654322211111111111111 225777777654 4788998876422
Q ss_pred E--EEcCcCCceeEEEEeCCCCEEEEEeCCC-----------------------cEEEEECCCCcEEEEeecCCCCceeE
Q 007768 423 Q--EYDQHLGAVNTITFVDSNRRFVTSSDDK-----------------------SLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 423 ~--~~~~h~~~V~~i~~~p~~~~l~s~s~Dg-----------------------~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
. .+.........+. -++...+.|+.++ .+..||..+..-...-..+....-.+
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 2 1111111111222 2577777777542 46677776654322111111111112
Q ss_pred EEEcCCCCEEEEEEcC------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC--cEEEEeCC
Q 007768 478 ISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWK 549 (590)
Q Consensus 478 i~~sp~g~~la~~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg--~I~iwd~~ 549 (590)
++. -++++.++|+.+ ..+..||..+.........+...... ...+.+ +|++.++|+.+| .+..||..
T Consensus 459 ~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 459 VVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--ceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 222 256666777654 24677887751122222222222111 111222 788888998888 67778877
Q ss_pred CCeEEEEEecCC
Q 007768 550 SCKVFRTLKCHE 561 (590)
Q Consensus 550 t~~~~~~l~~h~ 561 (590)
+.+-...-..|.
T Consensus 534 ~~~W~~~~~~~~ 545 (557)
T PHA02713 534 TYEWNHICHQHS 545 (557)
T ss_pred cccccchhhhcC
Confidence 665443333443
No 384
>PHA02713 hypothetical protein; Provisional
Probab=96.87 E-value=0.1 Score=57.93 Aligned_cols=181 Identities=9% Similarity=0.086 Sum_probs=89.3
Q ss_pred cEEEEEECC------CeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEe
Q 007768 400 NILLAGMSD------KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYI 467 (590)
Q Consensus 400 ~~lvsg~~d------g~I~iwD~~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~~~~~~~ 467 (590)
.++++|+.+ ..+..||..+..-...-.-.... -.+++ .-+++..+.|+.++ ++..||..+..-...-
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 567777753 35778898876432111111111 11222 22567778887654 4788998765432211
Q ss_pred ecCCCCceeEEEEcCCCCEEEEEEcCC-----------------------eEEEEEcCCceeecccccccCcccccceEE
Q 007768 468 SEPHMHSMPSISLHPNTNWLAAQSLDN-----------------------QILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 468 ~~~~~~~i~~i~~sp~g~~la~~s~dg-----------------------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
..+....-.+++ .-++.+.+.|+.++ .+..||..+.. ......+...... ..
T Consensus 384 ~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~~~r~~--~~- 458 (557)
T PHA02713 384 DMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFWTGTIR--PG- 458 (557)
T ss_pred CCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCCccccc--Cc-
Confidence 111111111222 22577777776542 46778776532 1111211111101 11
Q ss_pred EEEcCCCCEEEEEcCC------CcEEEEeCCC---CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCC--cEEEcC
Q 007768 525 VNFSPDGRFVMSGDGE------GKCWFWDWKS---CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG--LIKYWD 590 (590)
Q Consensus 525 v~~spdg~~l~sgs~d------g~I~iwd~~t---~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg--~I~iWD 590 (590)
+ ..-+|++.+.|+.+ ..+..||..+ +..+..+.........+++ ++.+.++||.|| .+-.||
T Consensus 459 ~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 459 V-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred E-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcC
Confidence 1 12256666677654 2467898776 3444444433333333333 567889999888 444443
No 385
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.84 E-value=0.087 Score=44.30 Aligned_cols=100 Identities=12% Similarity=0.219 Sum_probs=69.4
Q ss_pred eEEEEEcc---CC-CEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce
Q 007768 346 VRDISFCN---DG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 346 V~~l~fsp---dg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~ 421 (590)
|++|++.. +| +.|++||.|..|++|+-+ ..+..+.....+..++-... ..|+.+..+|+|-+|+-. ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~----~~F~Y~l~NGTVGvY~~~--~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG----GRFAYALANGTVGVYDRS--QR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC----CEEEEEecCCEEEEEeCc--ce
Confidence 56777655 32 689999999999999754 66777766666665555443 459999999999999763 23
Q ss_pred EEEEcCcCCceeEEEEeCCC----CEEEEEeCCCcEE
Q 007768 422 TQEYDQHLGAVNTITFVDSN----RRFVTSSDDKSLR 454 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~----~~l~s~s~Dg~I~ 454 (590)
+...+. ...++++.+.+-. .-|++|-.+|.|-
T Consensus 74 lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344443 3346777766533 2688888888764
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.80 E-value=0.86 Score=47.68 Aligned_cols=201 Identities=16% Similarity=0.232 Sum_probs=97.7
Q ss_pred CCCEEEEEe-cCCeEEEEECCCC----cEEEEecCC--------CcceEEEEecCCCCCcEEEEEEC------CCeEEEE
Q 007768 354 DGTKFLTAS-YDKNIKYWDTETG----QVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGMS------DKKIVQW 414 (590)
Q Consensus 354 dg~~l~s~s-~Dg~I~vWd~~t~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~~------dg~I~iw 414 (590)
.-++|+..+ ..+.|.|.|+.+. +..+.+... ..+..+.+.++ +.+++++.. -|.+.++
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~---G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD---GRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS-----EEEEEEEETTS-S--EEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC---ccEEEEeccCCCCCCCCcEEEE
Confidence 345666666 6789999999743 444444320 11223333332 356666543 3678899
Q ss_pred eCCCCceEEEEcCcCC---ceeEEEEeCCCCEEEEEeC--------------------CCcEEEEECCCCcEEEEeecCC
Q 007768 415 DMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSSD--------------------DKSLRVWEFGIPVVIKYISEPH 471 (590)
Q Consensus 415 D~~t~~~~~~~~~h~~---~V~~i~~~p~~~~l~s~s~--------------------Dg~I~iwdl~~~~~~~~~~~~~ 471 (590)
|-.+.++........+ --..+-|.|..+.++|+.. ..+|.+||+...+.++.+..+.
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 9998888877754332 3467788898888888752 4579999999999999998765
Q ss_pred CCc-eeEEEEcC--CCCE-EEEEEcCCeEEEEEc-CCce-eecccccccC-----c----------ccccceEEEEEcCC
Q 007768 472 MHS-MPSISLHP--NTNW-LAAQSLDNQILIYST-RERF-QLNKKKRFAG-----H----------IVAGYACQVNFSPD 530 (590)
Q Consensus 472 ~~~-i~~i~~sp--~g~~-la~~s~dg~I~iwd~-~~~~-~~~~~~~~~~-----~----------~~~~~v~~v~~spd 530 (590)
.+. ...|.|.. +..+ |+.+....+|..|-- ..+. .......+.. - .....++.|.+|.|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 553 34566654 4444 333334555655533 2211 1111111110 0 01345788999999
Q ss_pred CCEEEEEc-CCCcEEEEeCCC---CeEEEEE
Q 007768 531 GRFVMSGD-GEGKCWFWDWKS---CKVFRTL 557 (590)
Q Consensus 531 g~~l~sgs-~dg~I~iwd~~t---~~~~~~l 557 (590)
.++|...+ ..|.|+.||+.. .+++..+
T Consensus 323 DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv 353 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISDPFNPKLVGQV 353 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SSTTS-EEEEEE
T ss_pred CCEEEEEcccCCcEEEEecCCCCCCcEEeEE
Confidence 99998766 689999999975 3444444
No 387
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.71 E-value=0.51 Score=53.97 Aligned_cols=237 Identities=13% Similarity=0.177 Sum_probs=117.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC--------CeEEEEEcc----------------CCCEEEEEecCCeE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK--------AVRDISFCN----------------DGTKFLTASYDKNI 367 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~--------~V~~l~fsp----------------dg~~l~s~s~Dg~I 367 (590)
+..|+.++.++.|.-.|. .+++.+..+..... ..+.+++.. .+..++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa-~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDA-ATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 456777777777777777 56666666543211 112233321 34578889999999
Q ss_pred EEEECCCCcEEEEecCCCcce-------------EEEEecCCCCCcEEEEEEC----------CCeEEEEeCCCCceEEE
Q 007768 368 KYWDTETGQVIRTFSTGKIPY-------------VVKLNPDDDKQNILLAGMS----------DKKIVQWDMNTKEITQE 424 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~lvsg~~----------dg~I~iwD~~t~~~~~~ 424 (590)
.-.|.++|+.+..|....... .....|.- ....+++|+. +|.|+-+|.++|+++..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999999998775432211 00111110 1135666643 68999999999999988
Q ss_pred EcCcCCceeEEEEeCCCCEEEEEeCCC-cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 425 YDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 425 ~~~h~~~V~~i~~~p~~~~l~s~s~Dg-~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
+..-....+.. .+.+.....++... ...-+|...+.. .+......+ .+....+........+.|.-.|..+
T Consensus 352 ~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glv--y~ptGn~~p----d~~g~~r~~~~n~y~~slvALD~~T 423 (764)
T TIGR03074 352 WDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLV--YLPMGNQTP----DQWGGDRTPADEKYSSSLVALDATT 423 (764)
T ss_pred EecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeE--EEeCCCccc----cccCCccccCcccccceEEEEeCCC
Confidence 75311111110 11232222222111 222333333222 111111000 0000000000011123455555555
Q ss_pred ceeecccccccCc----ccccceEEEEEcC-CCC---EEEEEcCCCcEEEEeCCCCeEEEEEe
Q 007768 504 RFQLNKKKRFAGH----IVAGYACQVNFSP-DGR---FVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 504 ~~~~~~~~~~~~~----~~~~~v~~v~~sp-dg~---~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
++..-..+..... .......-+.+.. +|+ .|+.++.+|.++++|..+|+++....
T Consensus 424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 5433322221100 0001111133433 564 78999999999999999999887654
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.68 E-value=0.18 Score=56.10 Aligned_cols=189 Identities=8% Similarity=0.057 Sum_probs=103.2
Q ss_pred cCCCCeEEEEEccCCCEEEEEe------cCC--eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEE-------
Q 007768 341 GHSKAVRDISFCNDGTKFLTAS------YDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG------- 405 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s------~Dg--~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg------- 405 (590)
+....+.+.+++|+|+.++... .|. .|.+++.. +.. ..+..+.....-.|.+++. .+.+.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCC---ceEEEecCcceE
Confidence 3445688999999999887665 243 45555642 222 3333333344556666532 12222
Q ss_pred -----ECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE---EECCCCc-EE---EEeecCCCC
Q 007768 406 -----MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV---WEFGIPV-VI---KYISEPHMH 473 (590)
Q Consensus 406 -----~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i---wdl~~~~-~~---~~~~~~~~~ 473 (590)
...+.+++.++..++... ...+.|..+.|+|+|.+++... ++.|++ -....+. .+ ..+......
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 123556666666655433 3356799999999999988876 477777 3323332 11 112222333
Q ss_pred ceeEEEEcCCCCEEEEEEcCCeEEEEE--cCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQILIYS--TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 545 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~I~iwd--~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i 545 (590)
.+..+.|..++.++ ++..++...+|. +...... .+.+......+..|+-++. -|+..+.+|.+.+
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~----~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD----ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEecCCcccc----ccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 46789999988855 555555444454 4322111 1122212344555666653 4666666774444
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.57 E-value=1.1 Score=47.27 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCC
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~ 562 (590)
+.+++.+|.+++.++.++-|+|.++|+.++..++.+++-..
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 56799999999999999999999999999998888887654
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.55 E-value=0.11 Score=57.73 Aligned_cols=175 Identities=18% Similarity=0.153 Sum_probs=93.5
Q ss_pred CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe------CCC--cEEEEECCCCcEEEEeecCCCCceeEEE
Q 007768 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS------DDK--SLRVWEFGIPVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 408 dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s------~Dg--~I~iwdl~~~~~~~~~~~~~~~~i~~i~ 479 (590)
+|.+.-.+-..-..+....+....+.+.+++|+|+.++... .|. .|.+++..... ..+... .....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCce
Confidence 66665554332222222223334678899999999887665 243 45555653322 333322 2378889
Q ss_pred EcCCCCEEEEEEcCCe-EEEEEcCCceeecccccccCc---ccccceEEEEEcCCCCEEEEEcCCCcEEE---EeCCCCe
Q 007768 480 LHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWF---WDWKSCK 552 (590)
Q Consensus 480 ~sp~g~~la~~s~dg~-I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~v~~spdg~~l~sgs~dg~I~i---wd~~t~~ 552 (590)
|+|+|..|++.+..+. +++.+......+.....-.+. ...+.|..+.|||||..|+... +|.|++ -....|.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999988887754322 222221111111100000000 1134588899999999988765 578877 4444554
Q ss_pred E-E---EEEe-cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 553 V-F---RTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 553 ~-~---~~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
. + ..+. .-...+.++.|.. ++.++ .+..++...+|
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~ 522 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVW 522 (591)
T ss_pred eeecccEEeecccCCccccceEec-CCEEE-EEecCCCCceE
Confidence 1 1 1122 2233468899998 55544 54544443343
No 391
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.012 Score=62.84 Aligned_cols=94 Identities=6% Similarity=0.004 Sum_probs=75.7
Q ss_pred CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCcee-EEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 007768 385 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN-TITFVDSNRRFVTSSDDKSLRVWEFGIPVV 463 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~-~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~ 463 (590)
.....+.|+|.- .+++.+..+|.|.+..+. .+.+.++.-|...++ +++|.|+|+.|++|-.||+|++.|+.++..
T Consensus 21 ~~i~~~ewnP~~---dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKM---DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCcc---chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 344456666644 589999999999999988 667788877777777 999999999999999999999999999888
Q ss_pred EEEeecCCCCceeEEEEcC
Q 007768 464 IKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 464 ~~~~~~~~~~~i~~i~~sp 482 (590)
+..........|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7764434556788888864
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.40 E-value=0.34 Score=53.78 Aligned_cols=228 Identities=12% Similarity=0.124 Sum_probs=113.8
Q ss_pred CCEEEEEeCCC------cEEEEecCCCC-eeEEEeccCCCCeEEEEEccCCCEEEEEecC------CeEEEEECCCCcEE
Q 007768 312 GHLILSAGMDT------KVKIWDVVNSG-KCMRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIKYWDTETGQVI 378 (590)
Q Consensus 312 g~~L~sgs~Dg------~I~iWd~~~~~-~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D------g~I~vWd~~t~~~~ 378 (590)
+.+++.||.++ .+..+|..... ..+..+. +...-.++++. ++...++||.| .++..||..+.+..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 56777787774 57777773221 1111122 22223344443 46788889988 35778888877754
Q ss_pred EEecCCCcceEEEEecCCCCCcEEEEEECCCe-----EEEEeCCCCceEEE--EcCcCCceeEEEEeCCCCEEEEEeCCC
Q 007768 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK-----IVQWDMNTKEITQE--YDQHLGAVNTITFVDSNRRFVTSSDDK 451 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~-----I~iwD~~t~~~~~~--~~~h~~~V~~i~~~p~~~~l~s~s~Dg 451 (590)
..-.....-........ .+.+.++|+.||. |-.||..+.+-... +.........+. -++...++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCC
Confidence 42222222222222221 2367888888864 66788776642211 111111111222 2577778887554
Q ss_pred ------cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCe-----EEEEEcCCceeecccccccCccccc
Q 007768 452 ------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-----ILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 452 ------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
++..||..+..-...-.-.....-..++. -++.+.++|+.|+. |..||..+.. ..............
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc-eeEcccCccccccc
Confidence 46777776654332211111111112222 25777788887763 6677776532 11111111111111
Q ss_pred ceEEEEEcCCCCEEEEEcCCC-----cEEEEeCCCC
Q 007768 521 YACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSC 551 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg-----~I~iwd~~t~ 551 (590)
.+ ..-++...++|+.+| +|..||..+.
T Consensus 517 g~----~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 517 GV----VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cE----EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 11 112566777787766 3666665443
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.33 E-value=0.16 Score=56.31 Aligned_cols=216 Identities=10% Similarity=0.093 Sum_probs=112.5
Q ss_pred CCCEEEEEecC------CeEEEEECCCCcEEEEecCC--CcceEEEEecCCCCCcEEEEEECC------CeEEEEeCCCC
Q 007768 354 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTK 419 (590)
Q Consensus 354 dg~~l~s~s~D------g~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~d------g~I~iwD~~t~ 419 (590)
.+.+++.|+.+ ..+..+|..++......... .....+++.. +.++++|+.+ ..+..||.++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~----~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN----GKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC----CEEEEEccccCCCcccceEEEecCCCC
Confidence 34455666665 46778888877554433322 2222333322 2688888888 35778888877
Q ss_pred ceEEE--EcCcCCceeEEEEeCCCCEEEEEeCCCc-----EEEEECCCCcEEEEeecCCCCceeEEE-EcCCCCEEEEEE
Q 007768 420 EITQE--YDQHLGAVNTITFVDSNRRFVTSSDDKS-----LRVWEFGIPVVIKYISEPHMHSMPSIS-LHPNTNWLAAQS 491 (590)
Q Consensus 420 ~~~~~--~~~h~~~V~~i~~~p~~~~l~s~s~Dg~-----I~iwdl~~~~~~~~~~~~~~~~i~~i~-~sp~g~~la~~s 491 (590)
+-... +........ ++. -+|...++|+.||. |-.||..+.+-...- +......... ..-+|.+.++|+
T Consensus 360 ~W~~~a~M~~~R~~~~-v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFG-VAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred ceeccCCccCccccce-eEE-ECCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEcC
Confidence 63321 111111111 111 25778889998864 667776655432221 1111111111 222677777777
Q ss_pred cCC------eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCc-----EEEEeCCCCe--EEEEEe
Q 007768 492 LDN------QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-----CWFWDWKSCK--VFRTLK 558 (590)
Q Consensus 492 ~dg------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~-----I~iwd~~t~~--~~~~l~ 558 (590)
.++ .+..||..+.. ........... .... .-.-++.+.+.|+.++. |..||..+.+ .+..+.
T Consensus 436 ~~~~~~~l~sve~YDP~t~~-W~~~~~M~~~R--~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNT-WTLIAPMNTRR--SGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred cCCCccccceEEEEcCCCCc-eeecCCccccc--ccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 553 46778776532 11111111111 1111 11226777788887763 7778876644 333333
Q ss_pred cCCCcEEEEEEcCCCCCEEEEEeCCCc
Q 007768 559 CHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 559 ~h~~~V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
.....+..+.+ ++.+.+.||.||.
T Consensus 511 ~~rs~~g~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 511 SPRSAVGVVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred cccccccEEEE---CCEEEEEecccCc
Confidence 33333333444 5678888888875
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.27 E-value=0.66 Score=48.51 Aligned_cols=153 Identities=14% Similarity=0.221 Sum_probs=81.1
Q ss_pred cCCCCCEEEEEeC------CCcEEEEecCCCCeeEEEeccC---CCCeEEEEEccCCCEEEEEec---------------
Q 007768 308 FPKYGHLILSAGM------DTKVKIWDVVNSGKCMRTYMGH---SKAVRDISFCNDGTKFLTASY--------------- 363 (590)
Q Consensus 308 sp~~g~~L~sgs~------Dg~I~iWd~~~~~~~~~~~~~h---~~~V~~l~fspdg~~l~s~s~--------------- 363 (590)
-|+ |.+++|+-. -|-+.+.|- ++.......... ...-.++.|.|..+.++|+..
T Consensus 138 lp~-G~imIS~lGd~~G~g~Ggf~llD~-~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 138 LPD-GRIMISALGDADGNGPGGFVLLDG-ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp -SS---EEEEEEEETTS-S--EEEEE-T-TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred cCC-ccEEEEeccCCCCCCCCcEEEEcC-ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 355 777777532 244666665 334455444332 234567888888888888742
Q ss_pred -----CCeEEEEECCCCcEEEEecCCC---cceEEEEecCCCCCcEEEEEECCCeEEEEeC-CCCc----eEEEEcCc--
Q 007768 364 -----DKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM-NTKE----ITQEYDQH-- 428 (590)
Q Consensus 364 -----Dg~I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~-~t~~----~~~~~~~h-- 428 (590)
..+|.+||+.+.+.++++..+. .+.-+.|..++....-|+.+.-..+|..|-- ..++ .+..+...
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 4589999999999999998874 3456778877776666666666777776654 3332 22222111
Q ss_pred ---------------CCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCc
Q 007768 429 ---------------LGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPV 462 (590)
Q Consensus 429 ---------------~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~ 462 (590)
..-|+.|.++.+.++|..++ ..|.|+.||+..+.
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 24579999999999887665 58999999997653
No 395
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.25 E-value=0.00072 Score=74.24 Aligned_cols=199 Identities=16% Similarity=0.198 Sum_probs=105.4
Q ss_pred CCCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECC--CCcEEEEe------cCCCcceEE
Q 007768 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE--TGQVIRTF------STGKIPYVV 390 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~--t~~~~~~~------~~~~~~~~~ 390 (590)
+.+-|++-+.......-..+++..+.|-++.|.. +...++ -.-|.+.||++. .|+....+ ..+..+..+
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 4455677665322221123456778888888854 222222 223678899875 33322111 124444566
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~ 470 (590)
.|++.-.+..++..+..++.|++..+.+... ..+.+|...++.++|...|-..+.+
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~----------------------- 242 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS----------------------- 242 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-----------------------
Confidence 7777665556777888888988877765432 3334587777777665443221111
Q ss_pred CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC--CceeecccccccCcccccceEEEEEcCC-------C--CEEEEEc-
Q 007768 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTR--ERFQLNKKKRFAGHIVAGYACQVNFSPD-------G--RFVMSGD- 538 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~v~~v~~spd-------g--~~l~sgs- 538 (590)
++|||..|+..+.||.+++|.+. ..........++.|.....+|.+ |..+ + .++++++
T Consensus 243 ---------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 243 ---------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred ---------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEeccc
Confidence 56666666666666666665432 11111112222333222334433 2221 1 2344444
Q ss_pred CCCcEEEEeCCCCeEE
Q 007768 539 GEGKCWFWDWKSCKVF 554 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~ 554 (590)
.+..+++|....++|+
T Consensus 313 ~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCcceeEeeccchhhh
Confidence 4556899988777766
No 396
>PRK10115 protease 2; Provisional
Probab=96.23 E-value=3.1 Score=47.43 Aligned_cols=243 Identities=10% Similarity=0.111 Sum_probs=116.1
Q ss_pred CCeeEEEEcCCCCCEEEEEe-CCC----cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC------CeEE
Q 007768 300 KGVSAIRFFPKYGHLILSAG-MDT----KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIK 368 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs-~Dg----~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D------g~I~ 368 (590)
-.+..+.|+|+ +++|+.+. .+| .|++-|+ .++..+........ ..++|.+|++.|+.+..+ ..|.
T Consensus 127 ~~l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~-~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPD-NTIMALAEDFLSRRQYGIRFRNL-ETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCC-CCEEEEEecCCCcEEEEEEEEEC-CCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 34778899999 66665543 333 4778888 35543322211221 469999999877766543 3688
Q ss_pred EEECCCC--cEEEEecCCCcceEEEEecCCCCCcEEEEEEC--CCeEEEEeCC--CCceEEEEcCcCCceeEEEEeCCCC
Q 007768 369 YWDTETG--QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMN--TKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 369 vWd~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~--t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
++++.++ +-...+........+......+...+++.... ++.+.+|+.. ++.....+....+....+. +..+.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR 281 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence 8899888 33444443222222222222223233433332 3578888853 3432222322222222222 22233
Q ss_pred EEEEEeCC-C--cEEEEECCCCcEEEEeecC-CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcc
Q 007768 443 RFVTSSDD-K--SLRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHI 517 (590)
Q Consensus 443 ~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~-~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~ 517 (590)
+++....+ . .|...++........+... ....+..+.+. ...++++...++.-+++-+.. ......+ .+...
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l-~~~~~- 358 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGI-AFDDP- 358 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEe-cCCCC-
Confidence 33333222 2 3444444422222333333 23467778877 334555555566655544332 1111111 11111
Q ss_pred cccceEEEEEc--CCCC-EEEEEc---CCCcEEEEeCCCCe
Q 007768 518 VAGYACQVNFS--PDGR-FVMSGD---GEGKCWFWDWKSCK 552 (590)
Q Consensus 518 ~~~~v~~v~~s--pdg~-~l~sgs---~dg~I~iwd~~t~~ 552 (590)
..+..+.++ +++. ++++.+ .-+.++.+|..+++
T Consensus 359 --~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 --AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred --ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 112223344 3433 444443 34678889987764
No 397
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.016 Score=65.41 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=76.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
.+..++.|++.|.+...|+...-.........+++|++++|+.+|..++.|-.+|.|.+||+..+.....+... ++. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap-~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAP-V 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCc-c
Confidence 45678899999999999887653322333456789999999999999999999999999999886665544433 332 2
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
..+..+.+..++..+++++..|. +|.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 34555666677778889888886 554
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.11 E-value=1 Score=44.49 Aligned_cols=163 Identities=9% Similarity=0.172 Sum_probs=105.9
Q ss_pred eccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC--cceEEEEecCCCCCcEEEEEECCCeEEEEeC
Q 007768 339 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 416 (590)
+.+-...|.++.|+|+.+.|++......-.||=...|+.++++.... .+..+.+.-. +.++++--.++.++++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~---n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG---NQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC---CEEEEEehhcceEEEEEE
Confidence 34555669999999999999999888888888888899999886543 3334444432 245555566778887776
Q ss_pred CCCceEEEE----------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE--EEeecC-------CCCceeE
Q 007768 417 NTKEITQEY----------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEP-------HMHSMPS 477 (590)
Q Consensus 417 ~t~~~~~~~----------~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~--~~~~~~-------~~~~i~~ 477 (590)
.....+... .......-.++|.|....|+.+-.-.-+.||.+...... ...... ....+.+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 554222111 112456778999999999999988888888776532211 111100 1224667
Q ss_pred EEEcCC-CCEEEEEEcCCeEEEEEcCCc
Q 007768 478 ISLHPN-TNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 478 i~~sp~-g~~la~~s~dg~I~iwd~~~~ 504 (590)
+.|++. +.+|+.+..++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 778765 455666666677777776543
No 399
>PHA03098 kelch-like protein; Provisional
Probab=95.98 E-value=0.32 Score=53.82 Aligned_cols=182 Identities=10% Similarity=0.088 Sum_probs=86.1
Q ss_pred CCEEEEEeCCC------cEEEEecCCCCeeEEEecc---CCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCcE
Q 007768 312 GHLILSAGMDT------KVKIWDVVNSGKCMRTYMG---HSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQV 377 (590)
Q Consensus 312 g~~L~sgs~Dg------~I~iWd~~~~~~~~~~~~~---h~~~V~~l~fspdg~~l~s~s~D-----g~I~vWd~~t~~~ 377 (590)
+.+++.||.++ .+..||.. .... ..+.. .......+. -++..++.||.+ ..+..||..+.+.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W-~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTK-TKSW-NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCC-CCee-eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 56677776543 46677762 3222 22211 111112222 267777788765 3577888877654
Q ss_pred EEEecC--CCcceEEEEecCCCCCcEEEEEECC------CeEEEEeCCCCceEEEEcCcCC-ceeEEEEeCCCCEEEEEe
Q 007768 378 IRTFST--GKIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 378 ~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~d------g~I~iwD~~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s 448 (590)
...-.. .....+... . ++.+++.|+.+ ..+..||+.+.+-...-..... .-.++.. -++..++.|+
T Consensus 371 ~~~~~lp~~r~~~~~~~-~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPRYNPCVVN-V---NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGG 445 (534)
T ss_pred eeCCCcCcCCccceEEE-E---CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECC
Confidence 432221 111122222 1 23567777632 4688899887643221110111 1112222 3556667766
Q ss_pred CCC--------cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-----CeEEEEEcCC
Q 007768 449 DDK--------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRE 503 (590)
Q Consensus 449 ~Dg--------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-----g~I~iwd~~~ 503 (590)
.+. .+.+||..+..-...-..+....-.+++. -++++++.|+.+ +.|.+||..+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 432 37888887654332211111111112222 256666666543 4577777654
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.92 E-value=2.1 Score=42.68 Aligned_cols=227 Identities=11% Similarity=0.113 Sum_probs=124.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCC------CCeeEEEecc-----CCCCeEEEEEccCCC------------EE
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVN------SGKCMRTYMG-----HSKAVRDISFCNDGT------------KF 358 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~------~~~~~~~~~~-----h~~~V~~l~fspdg~------------~l 358 (590)
-..|+|+|. +.+-++....+...+||... ...++.++.. .....+.+.|+.... .|
T Consensus 25 ~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 567899998 78888888889999999841 1223344432 234577888875332 36
Q ss_pred EEEecCCeEEEEECCCCcE-----EEEecCC---CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE--EEcCc
Q 007768 359 LTASYDKNIKYWDTETGQV-----IRTFSTG---KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQH 428 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~--~~~~h 428 (590)
+.++.||+|.-|...-+.. ...+... ..-.-+++........+.++--..++|-+||-.=..... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7888999999998532221 1122211 111234444333333445555567888888754322110 01000
Q ss_pred -----CCc--e---------eEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC------CCCE
Q 007768 429 -----LGA--V---------NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP------NTNW 486 (590)
Q Consensus 429 -----~~~--V---------~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp------~g~~ 486 (590)
-.+ | +-..-.++...=+.+..-|.|-+||+.-.-..+..........+.|+..| .+.+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 000 1 00011111112222334578999998644433333445556677788866 4677
Q ss_pred EEEEEcCCeEEEEEcCCceeecccccccCcc-cccceEEEEEcC
Q 007768 487 LAAQSLDNQILIYSTRERFQLNKKKRFAGHI-VAGYACQVNFSP 529 (590)
Q Consensus 487 la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp 529 (590)
|+----||+|..||..++..+-.+....++. .-.-++.+.|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 8777789999999988776554444333331 112244555543
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.42 Score=47.06 Aligned_cols=161 Identities=8% Similarity=0.048 Sum_probs=107.6
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007768 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~ 506 (590)
+-...+.+++|+|+.+.|++......-.||=-..+..+..+.....+..-.|.+..++.++++--.++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44455999999999999998888887777766778888888766666677888988888888888889998887754422
Q ss_pred eccccc----ccCccc-ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE---EEEEecCC-------CcEEEEEEcC
Q 007768 507 LNKKKR----FAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV---FRTLKCHE-------GVCIGCEWHP 571 (590)
Q Consensus 507 ~~~~~~----~~~~~~-~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~---~~~l~~h~-------~~V~~v~~sp 571 (590)
...... +..... ....-.++|+|..+.|+.+-.-.=+.||.+..... ++....+. ..|.++.|++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 221111 111100 23345699999999888887776677776653221 11111111 2467788888
Q ss_pred CCCCEEEEEeCCCcEE
Q 007768 572 LEQSKVATCGWDGLIK 587 (590)
Q Consensus 572 ~~~~~l~s~g~Dg~I~ 587 (590)
..+.+|+-+..++.|.
T Consensus 243 ~~~~LLVLS~ESr~l~ 258 (316)
T COG3204 243 ITNSLLVLSDESRRLL 258 (316)
T ss_pred CCCcEEEEecCCceEE
Confidence 6676777666665543
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.86 E-value=0.73 Score=45.55 Aligned_cols=145 Identities=16% Similarity=0.122 Sum_probs=86.4
Q ss_pred ceeEEEEeCCCCEEEEEe---CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEE-cCCcee
Q 007768 431 AVNTITFVDSNRRFVTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS-TRERFQ 506 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd-~~~~~~ 506 (590)
.+.+.++++++..++... ....|+++..... ..... ....+..-+|++++...++...+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688899999999877666 3345666554433 22222 233778889999987777766666666663 222211
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEc---CCCcEEEEeCC---CC------eEEEEEecCCCcEEEEEEcCCCC
Q 007768 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWK---SC------KVFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~dg~I~iwd~~---t~------~~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
.......... ...|..+.+||||..++.-. .++.|++--+. .+ ..+.........+.++.|.+ +.
T Consensus 101 ~~~~v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~ 177 (253)
T PF10647_consen 101 EPVEVDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DS 177 (253)
T ss_pred eeEEeccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CC
Confidence 1111111111 12788999999999887655 45777776542 23 11122223345789999999 55
Q ss_pred CEEEEEeC
Q 007768 575 SKVATCGW 582 (590)
Q Consensus 575 ~~l~s~g~ 582 (590)
.+++.+..
T Consensus 178 ~L~V~~~~ 185 (253)
T PF10647_consen 178 TLVVLGRS 185 (253)
T ss_pred EEEEEeCC
Confidence 56555544
No 403
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.71 E-value=3.1 Score=43.15 Aligned_cols=222 Identities=17% Similarity=0.138 Sum_probs=106.3
Q ss_pred EEccCCCEEEEEec-C--CeEEEEECCCCcEEEEecCCCc-ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE
Q 007768 350 SFCNDGTKFLTASY-D--KNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 350 ~fspdg~~l~s~s~-D--g~I~vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~ 425 (590)
+|.++|+.|+.++. | ..+.+.|+.+++..+....... .....+++.. +.++-......|+-.|+.+.+....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~---~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD---RALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS---SEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC---CeEEEEECCCeEEEEECCcCcEEEEE
Confidence 56778977776554 4 5677889999988776654322 2234444443 34544555678999999999877777
Q ss_pred cCcCCceeEEEEe--CCCCEEEEEe----------------------CCCcEEEEECCCCcEEEEeecCCCCceeEEEEc
Q 007768 426 DQHLGAVNTITFV--DSNRRFVTSS----------------------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 481 (590)
Q Consensus 426 ~~h~~~V~~i~~~--p~~~~l~s~s----------------------~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~s 481 (590)
......+-...|. .++..++-.- -...|.-.|+.++.....+. ....+..+.++
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~fs 196 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQFS 196 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCcccC
Confidence 6677766666664 3455543221 12235555666665444432 34556788899
Q ss_pred CCCCEEEEEEcC-------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE-----cCCCcEEEEeCC
Q 007768 482 PNTNWLAAQSLD-------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-----DGEGKCWFWDWK 549 (590)
Q Consensus 482 p~g~~la~~s~d-------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-----s~dg~I~iwd~~ 549 (590)
|....+++-|.. ..|.+.+..... ..++ ..+.....+..=-|+|||..|.-- +.+..|.-+|..
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v---~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKV---HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS----EES---S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceee---ecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 876544444332 234444433322 2111 112223344456789999987642 224467778888
Q ss_pred CCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCC
Q 007768 550 SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 550 t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
+++....... ..+..+.-++ ++.+++-=|.|
T Consensus 273 t~~~~~~~~~--p~~~H~~ss~-Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEM--PWCSHFMSSP-DGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE---SEEEEEE-T-TSSEEEEEE--
T ss_pred CCCceEEEeC--CceeeeEEcC-CCCEEEecCCC
Confidence 8766443332 2355566666 56665544444
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.55 E-value=4 Score=43.26 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=89.3
Q ss_pred CCEEEEEecCCeEEEEECCCCc-----EEEEecCCCcceEEEEecC-CCCCcEEEEEECCCeEEEEeCCC--Cc------
Q 007768 355 GTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGKIPYVVKLNPD-DDKQNILLAGMSDKKIVQWDMNT--KE------ 420 (590)
Q Consensus 355 g~~l~s~s~Dg~I~vWd~~t~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~lvsg~~dg~I~iwD~~t--~~------ 420 (590)
...|++||..|.++|++...+. .+.......++..+.+-.. .......++.-.-.+|.+|.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 4689999999999999985443 4444455555554444321 22233455556778888888732 11
Q ss_pred -eEEEEcCcCC--ceeEEEEeC----C-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc
Q 007768 421 -ITQEYDQHLG--AVNTITFVD----S-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 421 -~~~~~~~h~~--~V~~i~~~p----~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~ 492 (590)
.+..+..|.- ....+++-| . ..++.+-+.||.+.+|+-+.-.....+ +..--...+++.+....|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l--p~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL--PDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc--CCCCCCcCeEEeecCCEEEEecC
Confidence 1111112221 223333333 1 357788899999999997655443333 22333345788889999999999
Q ss_pred CCeEEEEEc
Q 007768 493 DNQILIYST 501 (590)
Q Consensus 493 dg~I~iwd~ 501 (590)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 999999875
No 405
>PRK13684 Ycf48-like protein; Provisional
Probab=95.53 E-value=3.5 Score=42.55 Aligned_cols=272 Identities=12% Similarity=0.085 Sum_probs=132.5
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec----cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 374 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t 374 (590)
...+++|.|... .+-+++|. +|.| |...+.++.-.... .....+.++.|..+ ..+++ +..+.|.. ..+.
T Consensus 45 ~~~l~~v~F~d~-~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDP-NHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDG 117 (334)
T ss_pred CCceEEEEEeCC-CcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCC
Confidence 557889999855 55566664 4543 43323332222211 12234778888643 34444 34444322 1222
Q ss_pred CcEEEEecC----CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-cCcCCceeEEEEeCCCCEEEEEeC
Q 007768 375 GQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 375 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
|+.-..+.. ......+... .. ...+++ +..|.|..= ...|+.-..+ ..-.+.+.++.+.+++.++++ +.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~--~~-~~~~~~-g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~-g~ 191 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITAL--GP-GTAEMA-TNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGKYVAV-SS 191 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEE--CC-Ccceee-eccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCeEEEE-eC
Confidence 322222211 1111211111 11 122333 334433221 1122222222 122457889999988755544 44
Q ss_pred CCcEEEE-ECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007768 450 DKSLRVW-EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 450 Dg~I~iw-dl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
.|.+..- + ........+..+....+.++.+.+++..++++ ..|.+++=+...+........ ........+..+.+.
T Consensus 192 ~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~ 268 (334)
T PRK13684 192 RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPII-PEITNGYGYLDLAYR 268 (334)
T ss_pred CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccC-CccccccceeeEEEc
Confidence 5655432 2 22233344444566788999999998877765 457664323333332221111 101112345678899
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeEEEEEec---CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 529 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+++..+++| .+|.|. .....++....+.. -......+.|.. ++. .+..|..|.|--|+
T Consensus 269 ~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~-~~~~G~~G~il~~~ 329 (334)
T PRK13684 269 TPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEK-GFVLGQRGVLLRYV 329 (334)
T ss_pred CCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCc-eEEECCCceEEEec
Confidence 988766655 466554 34454554444332 123577788776 444 45566788887653
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.53 E-value=3.1 Score=47.78 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=73.4
Q ss_pred CCEEEEEecCCeEEEEECCCCcEEEEecCCCcce-------E--EEEecC-------------CCCCcEEEEEECCCeEE
Q 007768 355 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-------V--VKLNPD-------------DDKQNILLAGMSDKKIV 412 (590)
Q Consensus 355 g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~-------~--~~~~~~-------------~~~~~~lvsg~~dg~I~ 412 (590)
+..|+.|+.++.|.-.|..+|+.+.++....... | +.+... ......++.++.|+.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5577777888999999999999998876543211 0 111110 01224688899999999
Q ss_pred EEeCCCCceEEEEcCcCCcee-------------EEEEeC--CCCEEEEEeC----------CCcEEEEECCCCcEEEEe
Q 007768 413 QWDMNTKEITQEYDQHLGAVN-------------TITFVD--SNRRFVTSSD----------DKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 413 iwD~~t~~~~~~~~~h~~~V~-------------~i~~~p--~~~~l~s~s~----------Dg~I~iwdl~~~~~~~~~ 467 (590)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|..+++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877632 22110 011111 1345666643 688999999999988776
Q ss_pred e
Q 007768 468 S 468 (590)
Q Consensus 468 ~ 468 (590)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 407
>PRK10115 protease 2; Provisional
Probab=95.37 E-value=6.7 Score=44.75 Aligned_cols=112 Identities=11% Similarity=0.098 Sum_probs=66.0
Q ss_pred CCeEEEEEccCCCEEEEEec-----CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC-----CeEEE
Q 007768 344 KAVRDISFCNDGTKFLTASY-----DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQ 413 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~-----Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~i 413 (590)
-.+..+.|+|+|++|+.+.. .-.|++.|+.+|..+...... ....+.|.+++. .++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~~~~~w~~D~~--~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VEPSFVWANDSW--TFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cceEEEEeeCCC--EEEEEEecCCCCCCCEEEE
Confidence 34677889999998886533 236889999988643222111 124466666543 455555432 47888
Q ss_pred EeCCCC--ceEEEEcCcCCcee-EEEEeCCCCEEEEEeC---CCcEEEEEC
Q 007768 414 WDMNTK--EITQEYDQHLGAVN-TITFVDSNRRFVTSSD---DKSLRVWEF 458 (590)
Q Consensus 414 wD~~t~--~~~~~~~~h~~~V~-~i~~~p~~~~l~s~s~---Dg~I~iwdl 458 (590)
+++.++ +-...+........ .+..+.++++++..+. ++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 999887 33334433223333 3333447776655443 356888885
No 408
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=3.4 Score=40.87 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=96.0
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE---EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t 418 (590)
-..-+.++.++ +++...+..+.-++|.|+.+...- ..+... .+...+.-.+ ++..++..+..+.+.|+.+
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--gyaygv~vsG---n~aYVadlddgfLivdvsd 157 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--GYAYGVYVSG---NYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC--ceEEEEEecC---CEEEEeeccCcEEEEECCC
Confidence 34556777776 457777888888999999876433 333333 3333333332 6777777777788888875
Q ss_pred C---ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC-ceeEEEEcCCCCEEEEEEcCC
Q 007768 419 K---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 419 ~---~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-~i~~i~~sp~g~~la~~s~dg 494 (590)
. .+...+....+.-..++.+ |++-..+..|+-+.+-|+..+.....+..-..+ .+.++..+++..+++.. +-
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~e 233 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DE 233 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--cc
Confidence 4 3444555445545566665 778888888999999999876554444332333 67777777766665554 33
Q ss_pred eEEEEEcCCc
Q 007768 495 QILIYSTRER 504 (590)
Q Consensus 495 ~I~iwd~~~~ 504 (590)
-+.+-|..+.
T Consensus 234 gvlivd~s~~ 243 (370)
T COG5276 234 GVLIVDVSGP 243 (370)
T ss_pred ceEEEecCCC
Confidence 3555555543
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.19 Score=57.40 Aligned_cols=144 Identities=11% Similarity=0.059 Sum_probs=90.5
Q ss_pred CeEEEEEccCCCEEEEE--ecCCeEEEEECCCCcEEE--------E----ecCCCcceEEEEecCCCCCcEEEEEECCCe
Q 007768 345 AVRDISFCNDGTKFLTA--SYDKNIKYWDTETGQVIR--------T----FSTGKIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~--s~Dg~I~vWd~~t~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
.|..+...+|+...++. +.+-.|..||+++-..-. . +.......++.|.|.-. ...++...|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--LNSAVDLSDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--chhhhhccccc
Confidence 45666666776655544 334478999987543211 1 11122334555555443 45778888999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec---CCCCceeEEEEcCCCCEE
Q 007768 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWL 487 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~~i~~i~~sp~g~~l 487 (590)
|++..+........--.....++|++|+|.|+.++.|-..|++.-|...-. ....+.. .....|.+|+|-....++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 998877543222211234567899999999999999999999998875433 2222222 124679999998877776
Q ss_pred EEEE
Q 007768 488 AAQS 491 (590)
Q Consensus 488 a~~s 491 (590)
++-+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 6543
No 410
>PHA03098 kelch-like protein; Provisional
Probab=95.14 E-value=1.1 Score=49.51 Aligned_cols=190 Identities=11% Similarity=0.043 Sum_probs=90.1
Q ss_pred CCCEEEEEecCC------eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC-----CeEEEEeCCCCceE
Q 007768 354 DGTKFLTASYDK------NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEIT 422 (590)
Q Consensus 354 dg~~l~s~s~Dg------~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~t~~~~ 422 (590)
++..++.||.++ .+..||..+.+....-.............. ++.+++.|+.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556667776542 577888887765432221111111111111 23577777765 35778888776432
Q ss_pred EEEcCc-CCceeEEEEeCCCCEEEEEeCC------CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC--
Q 007768 423 QEYDQH-LGAVNTITFVDSNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-- 493 (590)
Q Consensus 423 ~~~~~h-~~~V~~i~~~p~~~~l~s~s~D------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-- 493 (590)
..-... ...-.+++. -+++.++.|+.+ ..+..||..+..-......+......+++. .++.+++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCC
Confidence 211111 111112222 256677777632 457888887654332211111111122222 355666666543
Q ss_pred ------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe
Q 007768 494 ------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 552 (590)
Q Consensus 494 ------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~ 552 (590)
..+.+||..+.. ........... .....+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNK-WTELSSLNFPR--INASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCc-eeeCCCCCccc--ccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 237888876532 11111111111 11111222 67777777654 467888876643
No 411
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.96 E-value=5.6 Score=41.63 Aligned_cols=197 Identities=16% Similarity=0.074 Sum_probs=106.5
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEecCCC---cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC-
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL- 429 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~- 429 (590)
++ .++.+..+|.|.-.|.+++..+....... ....-.+..+ ..+++++.++.++.+|.++|+.+..+....
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~----G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD----GKIYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC----CeEEEecccceEEEEECCCCcEEEEEecCCC
Confidence 44 45555788999999999999776554432 1111111112 248889999999999999999888876555
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC--CCceeEEEEcCCCCEEEEEEc--CCeEEEEEcCCce
Q 007768 430 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERF 505 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~--~~~i~~i~~sp~g~~la~~s~--dg~I~iwd~~~~~ 505 (590)
..+..-....++ .+..++.++.+...+..++...-...... ...+..-.. .....++.+.. ++.+.-++..++.
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCc
Confidence 112222222233 34444467888887777766654432211 111111111 12233444444 4556666665554
Q ss_pred eecccccc--cCcc-----cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC
Q 007768 506 QLNKKKRF--AGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 560 (590)
Q Consensus 506 ~~~~~~~~--~~~~-----~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h 560 (590)
.....+.. .+.. .......+.. +.-++.++.+|.+...|..+++.+..+...
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYV---DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEE---CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 33321110 0000 0000000111 222356777888999999999999888764
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.28 Score=56.14 Aligned_cols=129 Identities=10% Similarity=-0.018 Sum_probs=79.9
Q ss_pred ECCCeEEEEeCCCCceEE-----EEc------CcCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCCCC
Q 007768 406 MSDKKIVQWDMNTKEITQ-----EYD------QHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 406 ~~dg~I~iwD~~t~~~~~-----~~~------~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
..+-.|+.||+++-.... -+. .......++.|+|.-. ..+.+..|+.|++..+........- .+...
T Consensus 121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~ 199 (1405)
T KOG3630|consen 121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTN 199 (1405)
T ss_pred cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCccc
Confidence 334478899997542211 111 1223456778887533 4667778899998877543322221 24667
Q ss_pred ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 537 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 537 (590)
..++++|+|.|+.+++|-..|++.-|...-.. ...+....... ...|.+|+|-....+|++-
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEE-NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCC-CcceeEEEEecceeEEEEe
Confidence 78999999999999999999999988654321 11111111111 3567888987776666643
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.81 E-value=0.073 Score=37.49 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=29.6
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE
Q 007768 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~ 553 (590)
...|..++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 455778999999999999999999999998 5544
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.81 E-value=1.8 Score=42.60 Aligned_cols=196 Identities=14% Similarity=0.222 Sum_probs=106.5
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeC-----CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec----
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGM-----DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---- 363 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~-----Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~---- 363 (590)
+.|-||. .|||+ |.+|...-. -|.|-|||..+.-..+-.+..|.-.-..+.|.+||+.++.+..
T Consensus 113 RHfyGHG------vfs~d-G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 113 RHFYGHG------VFSPD-GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred ceeeccc------ccCCC-CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 3445675 48999 888877644 3789999996666777788889888899999999999988742
Q ss_pred --------------CCeEEEEECCCCcEEEEecCCCc--ceEEEEecCCCCCcEEEEEEC-CC-----eEEEEeCCCCce
Q 007768 364 --------------DKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS-DK-----KIVQWDMNTKEI 421 (590)
Q Consensus 364 --------------Dg~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~-dg-----~I~iwD~~t~~~ 421 (590)
.-++.+.|..+|..+.+...... ..++.-...+.++. +..|+. .| --.+=-...++.
T Consensus 186 hpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 186 HPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred ccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCc
Confidence 01233344444444433322210 01111111111111 222211 00 000001112222
Q ss_pred EEEEcC-------cCCceeEEEEeCCCCEEEEEeCC-CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC
Q 007768 422 TQEYDQ-------HLGAVNTITFVDSNRRFVTSSDD-KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 422 ~~~~~~-------h~~~V~~i~~~p~~~~l~s~s~D-g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d 493 (590)
+.-+.. ....|-+|+.+.+..+++.++-. +...+||..++..+.....+. ... +-+...-|++.+.+
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaG--va~~~~gf~vssg~ 339 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAG--VAAAKGGFAVSSGQ 339 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---ccc--ceeccCceEEecCC
Confidence 222211 22346778887666666665544 457789999988765543221 112 22334446777888
Q ss_pred CeEEEEEc
Q 007768 494 NQILIYST 501 (590)
Q Consensus 494 g~I~iwd~ 501 (590)
|.|.+++-
T Consensus 340 G~~~~~s~ 347 (366)
T COG3490 340 GRIIFYSR 347 (366)
T ss_pred ceEEeccc
Confidence 98888853
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=94.77 E-value=1.9 Score=46.96 Aligned_cols=171 Identities=8% Similarity=-0.012 Sum_probs=77.7
Q ss_pred CCEEEEEeCCC-----cEEEEecCCCCeeEE--EeccCCCCeEEEEEccCCCEEEEEecC--CeEEEEECCCCcEEEEec
Q 007768 312 GHLILSAGMDT-----KVKIWDVVNSGKCMR--TYMGHSKAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 312 g~~L~sgs~Dg-----~I~iWd~~~~~~~~~--~~~~h~~~V~~l~fspdg~~l~s~s~D--g~I~vWd~~t~~~~~~~~ 382 (590)
+.+++.||.++ .+..||.. ...... .+.........+ .-++...+.||.+ ..+..||..+++....-.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~-~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYI-SNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECC-CCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 55667777643 45667763 322211 111111111112 2367777778764 357888877665433222
Q ss_pred CCCcceEEEEecCCCCCcEEEEEECCC---eEEEEeCCCCceEEE--EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007768 383 TGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQE--YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~lvsg~~dg---~I~iwD~~t~~~~~~--~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
........+.... ++.+.+.|+.++ .+..||.++.+-... +...... .+++ .-++...+.| |.+.+||
T Consensus 349 l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 349 LLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEEC---CceEEec
Confidence 2222111111111 235677777543 467788876643221 1111111 1222 2245556665 3577888
Q ss_pred CCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC
Q 007768 458 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d 493 (590)
..+..-...-..+....-.+++. -++++.++|+.+
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~ 456 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFY 456 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcC
Confidence 87654332211111111122222 256666666643
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.66 E-value=10 Score=43.23 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=54.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCC-CcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~ 422 (590)
-.|..|.++++|++|+..|..| |.|-.+-. .-....+..+.....+...+-+. ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-----------------------~~ 140 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-----------------------RF 140 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech-----------------------hh
Confidence 3588899999999999888754 44444321 11111222222211122211111 00
Q ss_pred EEEcCcCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCc
Q 007768 423 QEYDQHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~---~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
....+...|..+.|+|. +..|++-..|+++|+||+....
T Consensus 141 -~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 141 -FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 01134557888999986 4789999999999999996543
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.54 E-value=0.11 Score=36.56 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.9
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE
Q 007768 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 418
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=2.6 Score=46.69 Aligned_cols=196 Identities=13% Similarity=0.160 Sum_probs=98.2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
.++..+|..+|..-.-+. +.--.|+|+++ .|.++..+.-....+..+.|+.+. .|++...+|++.||++-. ..+
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~--sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~i 116 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI--SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFI 116 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEec--cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhh
Confidence 344555555553111112 33356888887 677766655444588899999654 677788999999999853 322
Q ss_pred EEecCC-----CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC-cCCce--eEEEEeCCCCE---EEEE
Q 007768 379 RTFSTG-----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAV--NTITFVDSNRR---FVTS 447 (590)
Q Consensus 379 ~~~~~~-----~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~-h~~~V--~~i~~~p~~~~---l~s~ 447 (590)
..+..+ ..+.-+.+..+ + +++-..+|.+.+..-........+.. ..... +|-+..+++.. ++-.
T Consensus 117 e~~svg~e~~~~~I~ec~~f~~---G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v 191 (829)
T KOG2280|consen 117 ESNSVGFESQMSDIVECRFFHN---G--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDV 191 (829)
T ss_pred cccccccccccCceeEEEEecC---c--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEee
Confidence 222111 11111222211 1 44444556555443222222222222 11112 23333333221 1111
Q ss_pred e-CCCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007768 448 S-DDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 448 s-~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~ 507 (590)
. ..+ ..++-.... .....+.. ....+..+.++|+.++|+.-...|.|.+-+......+
T Consensus 192 ~~~v~-~~~~q~~~~~~q~~~~~~-~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 192 DVAVG-LHICQVEESRVQLHALSW-PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred chhhh-hcccceecccccccccCC-CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 0 000 011111111 11112221 2356888999999999999999999999887654433
No 419
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.25 E-value=0.49 Score=49.79 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=94.5
Q ss_pred CCCEEE-EEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCC----cEEEEEECCCeEEEEeCCCCc-eE--EEE
Q 007768 354 DGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ----NILLAGMSDKKIVQWDMNTKE-IT--QEY 425 (590)
Q Consensus 354 dg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~----~~lvsg~~dg~I~iwD~~t~~-~~--~~~ 425 (590)
+..+|+ .|+.-..+.-.|++.|+++.....+... ++.+.|...-+ .--++|-++..|.-.|.+-.. .+ ...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 4555567888899999999998887766 67777654321 225667778888888877432 11 111
Q ss_pred cC--cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 426 DQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 426 ~~--h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
+. ......|+.-. ...+++++|..|-|++||- .+...++........|..|..+.+|+++++.| ...|.+.|++
T Consensus 557 KdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDR-ig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDR-IGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred hhccccccccccccc-cCceEEEecCCCceeeehh-hcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 11 11122233322 3459999999999999994 44444444445677899999999999988766 4567777764
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.99 E-value=0.18 Score=56.33 Aligned_cols=131 Identities=17% Similarity=0.217 Sum_probs=78.6
Q ss_pred cCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCC------CcEEEEeecCCCCceeEEEEcC---CCCEEEEEEcCCe
Q 007768 426 DQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHP---NTNWLAAQSLDNQ 495 (590)
Q Consensus 426 ~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~------~~~~~~~~~~~~~~i~~i~~sp---~g~~la~~s~dg~ 495 (590)
++..+.|-.+.|-.. ...+. -.-|.+.||++.. .........+....+.-+.|.| +..+++++-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 345566666666421 11111 2346788898742 2233344445555566667765 5677888888888
Q ss_pred EEEEEcCCceeecccccccCccc---------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCC-----CCeEEEEEecCC
Q 007768 496 ILIYSTRERFQLNKKKRFAGHIV---------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-----SCKVFRTLKCHE 561 (590)
Q Consensus 496 I~iwd~~~~~~~~~~~~~~~~~~---------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~-----t~~~~~~l~~h~ 561 (590)
|++..+..... ..+.+|.. .+++.--.+||||..++..+.||.+.+|.+. .-++++.++.|+
T Consensus 207 i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 207 IRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 88876654322 22333311 2223334589999999999999999888753 345666777777
Q ss_pred C
Q 007768 562 G 562 (590)
Q Consensus 562 ~ 562 (590)
+
T Consensus 283 ~ 283 (1283)
T KOG1916|consen 283 K 283 (1283)
T ss_pred C
Confidence 4
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.89 E-value=2.4 Score=44.44 Aligned_cols=146 Identities=11% Similarity=0.064 Sum_probs=77.0
Q ss_pred CceeEEEEeCCCCEEEEEe-----------CCC-cEEEEECCC--Cc--EEEEeecCCCCceeEEEEcCCCCEEEEEEcC
Q 007768 430 GAVNTITFVDSNRRFVTSS-----------DDK-SLRVWEFGI--PV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s-----------~Dg-~I~iwdl~~--~~--~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d 493 (590)
.....|+|.++|+++++.. ..+ .|.+++-.. ++ ....+.. .......+++.+++ ++ +++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G-ly-V~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG-VY-VATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC-EE-EeCCC
Confidence 4556788888888777653 223 676665432 22 2233332 33456789999888 44 44444
Q ss_pred CeEEEE-EcCCc-----eeecccccccCcc--cccceEEEEEcCCCCEEEEEcCC-------------------CcEEEE
Q 007768 494 NQILIY-STRER-----FQLNKKKRFAGHI--VAGYACQVNFSPDGRFVMSGDGE-------------------GKCWFW 546 (590)
Q Consensus 494 g~I~iw-d~~~~-----~~~~~~~~~~~~~--~~~~v~~v~~spdg~~l~sgs~d-------------------g~I~iw 546 (590)
.|..| +.... ........+.... .......++|.|||.+.++-+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 45444 44321 1111111222210 12335679999999876654421 446666
Q ss_pred eCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEe
Q 007768 547 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 547 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
+..+++....-.++ .....++|++ .+.++++-.
T Consensus 170 ~pdg~~~e~~a~G~-rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAHGF-QNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEecCc-CCCccceECC-CCCEEEEcc
Confidence 65555433222233 3357899999 566666543
No 422
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.89 E-value=7.6 Score=39.74 Aligned_cols=104 Identities=8% Similarity=0.108 Sum_probs=51.3
Q ss_pred cEEEEEECC-----CeEEEEeCCCCce---EEEEcCcCCce--eEEEEeCCCCEEEEEeC-----CCcEEEEECCCCcEE
Q 007768 400 NILLAGMSD-----KKIVQWDMNTKEI---TQEYDQHLGAV--NTITFVDSNRRFVTSSD-----DKSLRVWEFGIPVVI 464 (590)
Q Consensus 400 ~~lvsg~~d-----g~I~iwD~~t~~~---~~~~~~h~~~V--~~i~~~p~~~~l~s~s~-----Dg~I~iwdl~~~~~~ 464 (590)
.+++.|+.+ ..+..||+.+..- ...+..-..+. .+++.. ++..++.|+. ...+..||+.+..-.
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 566777654 3577788776653 12221111111 222332 4666677664 235788888765433
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEEcCC----eEEEEEcCCc
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDN----QILIYSTRER 504 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s~dg----~I~iwd~~~~ 504 (590)
..-..+........+...++++.+.|+.++ .+.+||..+.
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 211111111112222233567777777653 3567887653
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.80 E-value=1.7 Score=48.19 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=69.1
Q ss_pred cEEEEEECCCeEEEEeCCCCceEEEEc-CcCCceeEEEEe--CCCCEEEEEeCCCcEEEEECC---------CCcEEEEe
Q 007768 400 NILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFV--DSNRRFVTSSDDKSLRVWEFG---------IPVVIKYI 467 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~~~~~~-~h~~~V~~i~~~--p~~~~l~s~s~Dg~I~iwdl~---------~~~~~~~~ 467 (590)
...++.+....+.|||.+.+.+...-. ...+.|.++.|. |+++.+++.+-...|.+|.-. .-..++.+
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 344455556789999999886444332 356789999987 688899999999999998531 11233333
Q ss_pred --ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 468 --SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 468 --~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
.....++|....|.++|.+++.+ ++++.|+|-
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 22244789999999999666544 577888874
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.72 E-value=1.2 Score=49.97 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=73.9
Q ss_pred CceeEEEEcC--CCCEEEEEEcCCeEEEEEcCCce---------------eecccccccCcccccceEEEEEc--CCCCE
Q 007768 473 HSMPSISLHP--NTNWLAAQSLDNQILIYSTRERF---------------QLNKKKRFAGHIVAGYACQVNFS--PDGRF 533 (590)
Q Consensus 473 ~~i~~i~~sp--~g~~la~~s~dg~I~iwd~~~~~---------------~~~~~~~~~~~~~~~~v~~v~~s--pdg~~ 533 (590)
+.|..|.+.. ....|+++..||.|.+|.+..-. .......+.- .....++.++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceE
Confidence 3455554433 45678999999999999763211 0000011111 124567889998 88899
Q ss_pred EEEEcCCCcEEEEeCCC--CeEEEE-EecCCCcEEEEEEcCCC--CC---EEEEEeCCCcEEEcC
Q 007768 534 VMSGDGEGKCWFWDWKS--CKVFRT-LKCHEGVCIGCEWHPLE--QS---KVATCGWDGLIKYWD 590 (590)
Q Consensus 534 l~sgs~dg~I~iwd~~t--~~~~~~-l~~h~~~V~~v~~sp~~--~~---~l~s~g~Dg~I~iWD 590 (590)
||+++....|.||-... .+.... -..|...|-+|.|.+++ +. +|++++-.|.+.+|+
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 99999888888876543 221111 11255678899998754 22 788899999988874
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.56 E-value=9.4 Score=38.67 Aligned_cols=230 Identities=13% Similarity=0.147 Sum_probs=103.3
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEe--cCCC--cceEEEEecCCCCCcEEEEEECCCeEEEEeCC
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF--STGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 417 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~--~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~ 417 (590)
-...+.+|.|.....-+++|. .+.| +-....|+.=... .... ......+.+.+. ..+++|. .+ +.+....
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~-~g-~ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGE-PG-LLLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEE-TT-EEEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcC-Cc-eEEEecC
Confidence 456889999996566666654 4543 2222323221111 1111 122222233222 3455553 34 3344444
Q ss_pred CCceEEEEc---CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC
Q 007768 418 TKEITQEYD---QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 418 t~~~~~~~~---~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg 494 (590)
.++.-..+. .-.+....+....++..++ .+..|.|+. ..+.+..-..+.......+..+..+++|.++++++..+
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 444333321 1223344455554543333 444555432 23444444555555667889999999999999887666
Q ss_pred eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe-CCCCeEEEE--Ee--cCCCcEEEEEE
Q 007768 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKVFRT--LK--CHEGVCIGCEW 569 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd-~~t~~~~~~--l~--~h~~~V~~v~~ 569 (590)
...-|+--.. ......+ .....+..+.|+|++.+.+.+ ..|.|++=+ ......... .. ...-.+.+++|
T Consensus 167 ~~~s~~~G~~-~w~~~~r----~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 167 FYSSWDPGQT-TWQPHNR----NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp EEEEE-TT-S-S-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred EEEEecCCCc-cceEEcc----CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 6667765321 0111111 124567889999998877755 788888877 222222222 11 12224899999
Q ss_pred cCCCCCEEEEEeCCCcEE
Q 007768 570 HPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 570 sp~~~~~l~s~g~Dg~I~ 587 (590)
.+ .....++|+ .|.|.
T Consensus 241 ~~-~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 241 RP-PNEIWAVGG-SGTLL 256 (302)
T ss_dssp SS-SS-EEEEES-TT-EE
T ss_pred cC-CCCEEEEeC-CccEE
Confidence 98 555566555 55543
No 426
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.34 E-value=1.9 Score=46.49 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=86.8
Q ss_pred CceeEEEEeCCCCEEEEEe---CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCC----CEEEEEEcCCeEEEEEcC
Q 007768 430 GAVNTITFVDSNRRFVTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT----NWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g----~~la~~s~dg~I~iwd~~ 502 (590)
.+|..++|.. |+.++.+. .+|.+++=| ...+. ....|..++|.|-+ ..|++......|.+|.+-
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viG-----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIG-----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEee-----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 4788899984 54444332 234443322 22232 33458889999852 234444557889999874
Q ss_pred Cc--eeecccccccCcc---cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--CeEEEEEecCCCcEEEEEEcCCCCC
Q 007768 503 ER--FQLNKKKRFAGHI---VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKVFRTLKCHEGVCIGCEWHPLEQS 575 (590)
Q Consensus 503 ~~--~~~~~~~~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--~~~~~~l~~h~~~V~~v~~sp~~~~ 575 (590)
-. ..-+.......++ ...-...+.|+|....|++-.....-.++++.. .+...-++ ..+.|.|.+|.+++.+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQR 169 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCE
Confidence 21 1100001001110 011122468999998888766655555666643 33333443 4678999999997777
Q ss_pred EEEEEeCCCcEEEcC
Q 007768 576 KVATCGWDGLIKYWD 590 (590)
Q Consensus 576 ~l~s~g~Dg~I~iWD 590 (590)
++++.|..=.-+|||
T Consensus 170 LVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWD 184 (671)
T ss_pred EEEEeCCeEEEEEec
Confidence 777777766678887
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.30 E-value=7.6 Score=36.87 Aligned_cols=101 Identities=16% Similarity=0.296 Sum_probs=64.8
Q ss_pred EEEEECCCeEEEEeCCC--CceEEEEcCcCCceeEEEEeCCCCEEEEEeCC------CcEEEE-ECCCC----cE-----
Q 007768 402 LLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDSNRRFVTSSDD------KSLRVW-EFGIP----VV----- 463 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t--~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D------g~I~iw-dl~~~----~~----- 463 (590)
|+.+...+.|.+|++.. .+....+. .-+.|..+.++..|+++++--.+ ..+|+| +++.. .+
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 44447778899999983 35566665 44889999999999999986432 256664 22211 11
Q ss_pred ----------------EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007768 464 ----------------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 464 ----------------~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~ 504 (590)
+..+..|...++.+++..|-..-|++|+ ++.+.+|.+...
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1122224455677888888655555554 677889987643
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.28 E-value=4.4 Score=43.88 Aligned_cols=154 Identities=11% Similarity=0.081 Sum_probs=89.1
Q ss_pred CCCeEEEEEccCCCEEE-EEe--cCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCC-cEEEEEECCCeEEEEeCCC
Q 007768 343 SKAVRDISFCNDGTKFL-TAS--YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~-s~s--~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~lvsg~~dg~I~iwD~~t 418 (590)
-.+|..++|. ||+.++ +.- .+|.+++=| ...+..| ....-+.|.|..... ..+++......|.+|.+.-
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3568889997 555444 332 233333322 2333333 234456666653322 3577778889999998852
Q ss_pred -----CceEEEEcCc---CCc--eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEE
Q 007768 419 -----KEITQEYDQH---LGA--VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 419 -----~~~~~~~~~h---~~~--V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la 488 (590)
++.+.....+ .-+ -..+.|+|....|++-.....-.+++++.............+-|.|.+|.++|..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 2222221111 111 246789999888776655554456666554433333335677899999999998877
Q ss_pred EEEc-CCeEEEEEcCC
Q 007768 489 AQSL-DNQILIYSTRE 503 (590)
Q Consensus 489 ~~s~-dg~I~iwd~~~ 503 (590)
++-. .=.-+|||-..
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 6643 33467887543
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=93.21 E-value=6.1 Score=43.06 Aligned_cols=144 Identities=8% Similarity=-0.047 Sum_probs=67.2
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC--CeEEEEeCCCCceEEEEc
Q 007768 354 DGTKFLTASYD-----KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~t~~~~~~~~ 426 (590)
++..+++||.+ ..+..||..++.....-.............. ++.+.++|+.+ ..+..||..+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 34556667654 2566788877665443222211111111111 23567777753 457788877654222111
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCC---cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 427 QHLGAVNTITFVDSNRRFVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
-...........-+++..+.|+.++ .+..||..+..-...-..+....-.+++ .-++++.+.| |.+.+||..+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecCCC
Confidence 1111111111223577777777553 4677887665432211111111111222 2345555555 3567788754
No 430
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.17 E-value=4.3 Score=35.42 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=71.9
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecCCCC-------eeEEEeccCCCCeEEEEEcc-----CCCEEEEEecCCeEEEEE
Q 007768 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------KCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 304 ~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-------~~~~~~~~h~~~V~~l~fsp-----dg~~l~s~s~Dg~I~vWd 371 (590)
.-+|... ...|+.++.-|+|.|++..... ..++.+ .-...|++|+-.+ ....|+.|+ ...|..||
T Consensus 3 iGkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred EEEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 3455555 5578888889999999873221 122333 3556788886544 234566665 57899999
Q ss_pred CCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE
Q 007768 372 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 372 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~ 425 (590)
+....-+..........++.+-..+....-++..+.+..|.-||..-.+..++.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 988776655444455555544333332233455555677887887666555443
No 431
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=5.5 Score=37.50 Aligned_cols=176 Identities=11% Similarity=-0.007 Sum_probs=90.9
Q ss_pred cEEEEEEC--CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEEEEeecCCCCcee
Q 007768 400 NILLAGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 476 (590)
Q Consensus 400 ~~lvsg~~--dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~ 476 (590)
+++.+.+. ...|++||+.+++.+....-....+..=-...-+.+ .+.+-.+|.-..+|.++-+.+..+.- .+.-.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y--~GeGW 134 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY--EGEGW 134 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc--CCcce
Confidence 55555543 457999999999876654322111111111111222 33445678888899888777766643 23333
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc-cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEE
Q 007768 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK-RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 477 ~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
.++ .+++-|+.+.....++.-|..+-....... +..+.. -..+..+.|- ||.+.+-.-....|...+..+|+.+.
T Consensus 135 gLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p-v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP-VSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee-cccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 443 355556666555556655544322221111 111110 1111122221 34444433344455556666776655
Q ss_pred EEe------------cCCCcEEEEEEcCCCCCEEEEEe
Q 007768 556 TLK------------CHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 556 ~l~------------~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
.+. .|....+.+++.|+..++++||-
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 543 24557789999996667777763
No 432
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.94 E-value=4.7 Score=45.30 Aligned_cols=103 Identities=16% Similarity=0.269 Sum_probs=70.8
Q ss_pred CCcEEEEEECCCeEEEEeCCC-------C----c---------eEEEEcCcCCceeEEEEe--CCCCEEEEEeCCCcEEE
Q 007768 398 KQNILLAGMSDKKIVQWDMNT-------K----E---------ITQEYDQHLGAVNTITFV--DSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t-------~----~---------~~~~~~~h~~~V~~i~~~--p~~~~l~s~s~Dg~I~i 455 (590)
+..+|+++..||.|.+|.+.+ . . +...+ .-...+.+++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 346899999999999997631 0 0 11111 123468889998 77788888888888888
Q ss_pred EECCCC--cEEEEeecCCCCceeEEEEcCCC---C---EEEEEEcCCeEEEEEc
Q 007768 456 WEFGIP--VVIKYISEPHMHSMPSISLHPNT---N---WLAAQSLDNQILIYST 501 (590)
Q Consensus 456 wdl~~~--~~~~~~~~~~~~~i~~i~~sp~g---~---~la~~s~dg~I~iwd~ 501 (590)
|-+... +....-...+.+.|++|+|-++. . +|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 766442 11111122477889999997753 2 7888899999999888
No 433
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.83 E-value=12 Score=37.81 Aligned_cols=170 Identities=11% Similarity=0.173 Sum_probs=90.8
Q ss_pred eEEEEECCCCcEEEEecCCCcc-------eEEEEecCCC---CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC-----
Q 007768 366 NIKYWDTETGQVIRTFSTGKIP-------YVVKLNPDDD---KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG----- 430 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~----- 430 (590)
.|.+||+.+++.++++..+... ..+.+..... .....++=+..+.|.++|+.+++..+.+..+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999998887654322 2233333221 123455555567999999999877666543221
Q ss_pred --------------ceeEEEEeC---CCCEEEEEeCCCcEEEEECC-----CCc---------EEEEeecCCCCceeEEE
Q 007768 431 --------------AVNTITFVD---SNRRFVTSSDDKSLRVWEFG-----IPV---------VIKYISEPHMHSMPSIS 479 (590)
Q Consensus 431 --------------~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~-----~~~---------~~~~~~~~~~~~i~~i~ 479 (590)
.+..++.+| ++++|.-..-.+. ++|.+. ... .+..+.. .......++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc-cCCCCceEE
Confidence 244445444 4444544443221 223221 110 1122211 123566788
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCceeecccccc-cCcccccceEEEEEcC--CCCEEEEE
Q 007768 480 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVAGYACQVNFSP--DGRFVMSG 537 (590)
Q Consensus 480 ~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~v~~v~~sp--dg~~l~sg 537 (590)
++++|.++++--..+.|..|+............+ .....-.++..+.+.+ +|.+.+..
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9999999999889999999998864322222211 1121134566788888 66655544
No 434
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.79 E-value=2 Score=45.38 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=87.3
Q ss_pred CcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-------EEEEEeCCCcEEEEECCCCc-EEEEe--e
Q 007768 399 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-------RFVTSSDDKSLRVWEFGIPV-VIKYI--S 468 (590)
Q Consensus 399 ~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~-------~l~s~s~Dg~I~iwdl~~~~-~~~~~--~ 468 (590)
.-++..|....+++-.|+..|+.+..+..|..- -+.|.|... .-++|-.+..|.-.|.+... .+... .
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence 345666777789999999999999999877665 467777532 23344445556555655432 11111 1
Q ss_pred c-CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 469 E-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 469 ~-~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
. .......+..- ....++|+++..|.|++||--... ....+.+. ...|..+..+.+|.+|++.+.. .|.+-|
T Consensus 558 dY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~r---AKtalP~l--G~aIk~idvta~Gk~ilaTCk~-yllL~d 630 (776)
T COG5167 558 DYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKR---AKTALPGL--GDAIKHIDVTANGKHILATCKN-YLLLTD 630 (776)
T ss_pred hcccccccccccc-ccCceEEEecCCCceeeehhhcch---hhhcCccc--ccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence 0 11112222222 245699999999999999964321 11222222 4557778999999998877644 677777
Q ss_pred CC
Q 007768 548 WK 549 (590)
Q Consensus 548 ~~ 549 (590)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 63
No 435
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=12 Score=37.24 Aligned_cols=273 Identities=10% Similarity=0.090 Sum_probs=144.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEE-eccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc-
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ- 376 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~- 376 (590)
.+-+..++++ +++...+..+.-++|.|+....++... +....+--.++.. .|++...+..|.-+.+.|+.+.+
T Consensus 86 ~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 3456777776 557778888888999999544433322 1111233344444 58888888877667788876543
Q ss_pred --EEEEecCCCcc-eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc---eEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 377 --VIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 377 --~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~---~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
...++...... .-+.++ +++...+..|+.+.+.|+.... ++..+. ....+.++..+++.-+++.. +
T Consensus 161 P~lagrya~~~~d~~~v~IS-----Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~ 232 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS-----GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--D 232 (370)
T ss_pred ceeeeeeccCCCCceeEEEe-----cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--c
Confidence 23333222211 222222 2567777889999999997653 333332 22367777776554343333 3
Q ss_pred CcEEEEECCCCcEEEEeecCCCCceeEE-EEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 451 KSLRVWEFGIPVVIKYISEPHMHSMPSI-SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i-~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
--+.+-|...+.....+..-....+.++ .+.-.+++......+.-+.+.|+.+.........+... ......+. .
T Consensus 233 egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~--g~~a~gi~--a 308 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA--GYQAAGIR--A 308 (370)
T ss_pred cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC--CccccceE--E
Confidence 4467778777664444332222223332 23335667777777777777777654322111111100 00111222 2
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.|.++..+..+ ...+-+....+......+-...+.++..+- ..+.+.+..+++-+.||+
T Consensus 309 y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~-~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 309 YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSV-DTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEE-EeeEEEEeecCCCEEEEE
Confidence 34555555544 445555544333332222222233333333 233788888999998886
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.60 E-value=11 Score=43.12 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=21.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
.-.|..|.++|+ |.+|+..|..| |.|-.+
T Consensus 84 ~f~v~~i~~n~~-g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 84 LFEVHQISLNPT-GSLLALVGPRG-VVVLEL 112 (717)
T ss_pred ceeEEEEEECCC-CCEEEEEcCCc-EEEEEe
Confidence 346999999999 88888888765 445455
No 437
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.51 E-value=3.3 Score=46.03 Aligned_cols=116 Identities=14% Similarity=0.181 Sum_probs=73.0
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEc--CCCCEEEEEEcCCeEEEEEcCCceee
Q 007768 430 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH--PNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~s--p~g~~la~~s~dg~I~iwd~~~~~~~ 507 (590)
....-+.-+.-++..++.+....+.|||.+.........-.....|..+.|. |++..+++.+..+.|.+|.-......
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3444455555555555555666899999988875544433557789999885 67889999999999999864211100
Q ss_pred ------cccc--cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 508 ------NKKK--RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 508 ------~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
..+. ....+ ....|....|.++|.+++..+ ..+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~-T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSH-TPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecC-CCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 0111 11122 124566789999997765543 36777763
No 438
>PLN02193 nitrile-specifier protein
Probab=92.13 E-value=20 Score=38.86 Aligned_cols=192 Identities=12% Similarity=0.122 Sum_probs=90.3
Q ss_pred CCCEEEEEecC-------CeEEEEECCCCcEEEEecCCCcc----eEEEEecCCCCCcEEEEEECC-----CeEEEEeCC
Q 007768 354 DGTKFLTASYD-------KNIKYWDTETGQVIRTFSTGKIP----YVVKLNPDDDKQNILLAGMSD-----KKIVQWDMN 417 (590)
Q Consensus 354 dg~~l~s~s~D-------g~I~vWd~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~ 417 (590)
++..++.|+.+ ..+.+||+.+.+-...-..+..+ ...+.... +..+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34556666643 24778888876544321111111 11111111 22567777654 468889998
Q ss_pred CCceEEEEcC---cC-CceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEeecC----CCCceeEEEEcCCC
Q 007768 418 TKEITQEYDQ---HL-GAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYISEP----HMHSMPSISLHPNT 484 (590)
Q Consensus 418 t~~~~~~~~~---h~-~~V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~~~~~~~~~~----~~~~i~~i~~sp~g 484 (590)
+.+-...-.. .. ..-.+++. -++++++.|+.++ .+..||+.+..-.. +..+ ....-..++.. ++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~~~~~~-~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGAGLEVV-QG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCcEEEEE-CC
Confidence 7643321111 11 11122222 2456667776543 46778876654322 1110 00111122222 56
Q ss_pred CEEEEEEcC----CeEEEEEcCCceeecccccccC-cccccceEEEEEcCCCCEEEEEcCC--------------CcEEE
Q 007768 485 NWLAAQSLD----NQILIYSTRERFQLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGE--------------GKCWF 545 (590)
Q Consensus 485 ~~la~~s~d----g~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~d--------------g~I~i 545 (590)
++++.++.+ +.+.+||+.+.. ......... .........+ .-++++++.|+.. ..+.+
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEEE
Confidence 677776655 468899987642 211111100 0001111122 2356777777743 24788
Q ss_pred EeCCCCeE
Q 007768 546 WDWKSCKV 553 (590)
Q Consensus 546 wd~~t~~~ 553 (590)
+|..+.+-
T Consensus 407 ~D~~t~~W 414 (470)
T PLN02193 407 LDTETLQW 414 (470)
T ss_pred EEcCcCEE
Confidence 89876543
No 439
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.95 E-value=21 Score=38.68 Aligned_cols=199 Identities=14% Similarity=0.112 Sum_probs=97.7
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC--CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~ 421 (590)
..|.++....+|. |.+++.+|.+++-+-+ ......+.. +.....+...+.... .-+-...+-|.+.+-+-.++..
T Consensus 290 S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~-~~v~~~ns~g~L~van~stG~~ 366 (671)
T COG3292 290 STVNSLWLDTDGS-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLS-WGVRQLNSIGELMVANGSTGEL 366 (671)
T ss_pred ccccceeeccCCC-EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcc-cceeeccccceEEEecCCCCcE
Confidence 3566666666775 6667777766654432 111111111 111111111111000 0112222223344444455555
Q ss_pred EEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEE
Q 007768 422 TQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 422 ~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iw 499 (590)
+..... -...|+.+++.. ...+..++..+-+..|+..+ ............+.|..|.-.|+++ |..|+.+|.++.-
T Consensus 367 v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~~ 444 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKRD 444 (671)
T ss_pred EEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEecC
Confidence 444322 223466666665 44566666664466677666 3333444445566788888888888 8888888866542
Q ss_pred EcCCceeecccccccCc-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 500 STRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
.......+. ..+..+ .....+..+.+.|+|++-+..+ + .|..|+.+..
T Consensus 445 -pe~~~v~n~-ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~-gva~~~sq~~ 493 (671)
T COG3292 445 -PESGRVLNL-LNPGSHGLDGSRVEQLGLGPDGRLWLAAG-S-GVAAWESQRR 493 (671)
T ss_pred -ccccchhcc-cccccCcCCcchhhhhccCCCCceEEEec-c-eeeeeccccc
Confidence 222111111 111111 1234567788999998644332 2 2577775443
No 440
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.79 E-value=17 Score=37.36 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=42.6
Q ss_pred CceeEEEEcC-------CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007768 473 HSMPSISLHP-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 544 (590)
Q Consensus 473 ~~i~~i~~sp-------~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~ 544 (590)
..+..+.|.. .+.+|++.-..+.|....+.....+.....+... ....+..+++.|||.+.++-+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGG-FGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTT-SSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcccc-CCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4556666653 3456666655678888887644333322332221 134678899999999998888888875
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.75 E-value=0.75 Score=31.52 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=27.3
Q ss_pred CCeeEEEEcCCCC--CEEEEEeCCCcEEEEecC
Q 007768 300 KGVSAIRFFPKYG--HLILSAGMDTKVKIWDVV 330 (590)
Q Consensus 300 ~~V~~l~~sp~~g--~~L~sgs~Dg~I~iWd~~ 330 (590)
+.|.+++|+|..+ .+|+.+-.-|.|.|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999998766 799999999999999994
No 442
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.60 E-value=19 Score=37.54 Aligned_cols=192 Identities=13% Similarity=0.114 Sum_probs=102.3
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEeccC--CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEE
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 390 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h--~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~ 390 (590)
..++.+..+|.|.-.|. ..+..+.....- ...+..-.+..+|+ |+.++.++.+..+|..+|+.+..+..... ...
T Consensus 69 g~v~~~~~~G~i~A~d~-~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNP-DTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS-PYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeC-CCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCC-eEE
Confidence 44555577777777776 444444322211 12223323333665 77788889999999999999988877661 111
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC---ceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEE
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIK 465 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~---~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~~ 465 (590)
.-.+. .....++.++.++.++..|..+++....+..... .+..--.. ....++.+.. ++.+.-.|...+...-
T Consensus 146 ~~~~v-~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 146 ASPPV-VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred ecCcE-EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEee
Confidence 11111 1113455555789999999999988777543221 11111111 2234455544 5556666766665554
Q ss_pred EeecC---CCCce---eEE---EEcCCCCEEEEEEcCCeEEEEEcCCceeeccc
Q 007768 466 YISEP---HMHSM---PSI---SLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 466 ~~~~~---~~~~i---~~i---~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~ 510 (590)
..... ....+ ..+ .+. .+.-++.++.++.+...+..++..+-..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSF 276 (370)
T ss_pred eeeeecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence 42110 10001 010 011 1222356667777888888777655443
No 443
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.54 E-value=18 Score=37.17 Aligned_cols=236 Identities=14% Similarity=0.165 Sum_probs=114.1
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCcE---EEEec---C--CCcceEEEEecCCCCCcEEEEEEC-C-------
Q 007768 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFS---T--GKIPYVVKLNPDDDKQNILLAGMS-D------- 408 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~---~~~~~---~--~~~~~~~~~~~~~~~~~~lvsg~~-d------- 408 (590)
.-+.|+|.|+|++|++ ...|.|++++ ..+.. +..+. . .....-+++++.-.....|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5699999999 44443 22221 1 122345677764333334444333 1
Q ss_pred -CeEEEEeCCCC-------c-eEEEEcC---cCCceeEEEEeCCCCEEEEEeCCCc-------------EEEEECCCCc-
Q 007768 409 -KKIVQWDMNTK-------E-ITQEYDQ---HLGAVNTITFVDSNRRFVTSSDDKS-------------LRVWEFGIPV- 462 (590)
Q Consensus 409 -g~I~iwD~~t~-------~-~~~~~~~---h~~~V~~i~~~p~~~~l~s~s~Dg~-------------I~iwdl~~~~- 462 (590)
..|.-|.+..+ + ++..+.. .......|.|.|++.++++.++.+. |.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24444444332 1 1112222 2234566999999977777665432 2222221110
Q ss_pred -----------EEEEeecCCCCceeEEEEcCC-CCEEEEE-EcCCeEEEEEcCCceee----------------------
Q 007768 463 -----------VIKYISEPHMHSMPSISLHPN-TNWLAAQ-SLDNQILIYSTRERFQL---------------------- 507 (590)
Q Consensus 463 -----------~~~~~~~~~~~~i~~i~~sp~-g~~la~~-s~dg~I~iwd~~~~~~~---------------------- 507 (590)
....+... ......++|+|. |.++++- +.++.=.|.-+..+...
T Consensus 161 ~dnP~~~~~~~~~~i~A~G-lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYG-LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeC-CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00001111 123457899998 5544432 22222222222211100
Q ss_pred ----cccccccCcccccceEEEEEcC-------CCCEEEEEcCCCcEEEEeCCCCeEEEEE----ecCCCcEEEEEEcCC
Q 007768 508 ----NKKKRFAGHIVAGYACQVNFSP-------DGRFVMSGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIGCEWHPL 572 (590)
Q Consensus 508 ----~~~~~~~~~~~~~~v~~v~~sp-------dg~~l~sgs~dg~I~iwd~~t~~~~~~l----~~h~~~V~~v~~sp~ 572 (590)
.....+..| ..+..+.|-. .|.++++.-..+.|....+.....+... ......+.++++.|
T Consensus 240 ~~~~~P~~~~~~~---~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p- 315 (331)
T PF07995_consen 240 PGFVPPVFAYPPH---SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP- 315 (331)
T ss_dssp TTS---SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-
T ss_pred CCcCccceeecCc---cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-
Confidence 000011111 2344555543 4567777777778888888754332221 23444799999999
Q ss_pred CCCEEEEEeCCCcEE
Q 007768 573 EQSKVATCGWDGLIK 587 (590)
Q Consensus 573 ~~~~l~s~g~Dg~I~ 587 (590)
++.++++-+.+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 677888877888874
No 444
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.34 E-value=2.1 Score=45.22 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=61.7
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCC-----------------CC
Q 007768 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD-----------------KQ 399 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 399 (590)
..+......+.+|+.+|.+++.++...-|.|.|+|+.++..++.++.-....|.-+..... ..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 3455566678999999999988888777999999999998888776544433322111111 11
Q ss_pred cEEEEEECCCeEEEEeCCCCceEEEEc
Q 007768 400 NILLAGMSDKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~~~~~~ 426 (590)
.+++-.-.-|.|-+|.+++|..+..+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 234445668899999999887665553
No 445
>PLN02153 epithiospecifier protein
Probab=91.19 E-value=20 Score=36.95 Aligned_cols=146 Identities=8% Similarity=0.040 Sum_probs=69.8
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCcEEEEecC-----CCcceEEEEecCCCCCcEEEEEECC-----------CeEE
Q 007768 354 DGTKFLTASYD-----KNIKYWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLAGMSD-----------KKIV 412 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lvsg~~d-----------g~I~ 412 (590)
++.+++.|+.+ ..+.+||+.+.+-...-.. ............ +..+++.|+.+ ..|.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEE
Confidence 56677777754 3577889887654332111 111111111221 22566776643 2477
Q ss_pred EEeCCCCceEEEEcCc----C-CceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCcEEEEeec---CC
Q 007768 413 QWDMNTKEITQEYDQH----L-GAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPVVIKYISE---PH 471 (590)
Q Consensus 413 iwD~~t~~~~~~~~~h----~-~~V~~i~~~p~~~~l~s~s~D-------------g~I~iwdl~~~~~~~~~~~---~~ 471 (590)
+||+.+.+-.. +... . ..-.+++. -++++++.++.+ ..|.+||+.+..-...-.. +.
T Consensus 163 ~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 163 AYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence 88888764322 1111 1 11112222 245666655432 4588899877654332111 11
Q ss_pred CCceeEEEEcCCCCEEEEEEcC--------------CeEEEEEcCCc
Q 007768 472 MHSMPSISLHPNTNWLAAQSLD--------------NQILIYSTRER 504 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~la~~s~d--------------g~I~iwd~~~~ 504 (590)
.....+++ ..++++++.|+.. +.|..||+.+.
T Consensus 241 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 241 ARSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CcceeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 11112222 2246677777641 25778887653
No 446
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.93 E-value=20 Score=36.55 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=53.2
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCcEE---EEec---CCCcceEEEEecCCCCCcEEEEEEC-----CCeEEEEeCC
Q 007768 354 DGTKFLTASYD-----KNIKYWDTETGQVI---RTFS---TGKIPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMN 417 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~---~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~-----dg~I~iwD~~ 417 (590)
++.+++.|+.+ ..+..+|+.+.+.. ..+. ........+.. +..+++.|+. ...+..||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~----~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK----DGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE----CCEEEEEeCcCCCccCceEEEEcCC
Confidence 55666777754 35667777766531 1211 11111122221 2256666664 2468889988
Q ss_pred CCceEEEEcCc-CCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCCcE
Q 007768 418 TKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPVV 463 (590)
Q Consensus 418 t~~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~Dg----~I~iwdl~~~~~ 463 (590)
+.+-...-.-. .......+..-+++.++.|+.++ .+.+||..+..-
T Consensus 148 ~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 148 TQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 76432211111 11122222334567778887654 356788876543
No 447
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.91 E-value=23 Score=40.99 Aligned_cols=235 Identities=9% Similarity=0.036 Sum_probs=106.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEE--E------e--ccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEe
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMR--T------Y--MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~--~------~--~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~ 381 (590)
++.|..|+.+|.+.+|.+.+...... . + .-+..+|..+...+.-..+++- .|+.|.++++.+.+.....
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~~~~~ 104 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEPVPSG 104 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcccccccc
Confidence 78999999999999999865432111 0 0 0124667666666644444433 4677888887765542211
Q ss_pred cC--CCcceEEEEecCCCC-CcEEEEEECCCe--EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007768 382 ST--GKIPYVVKLNPDDDK-QNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 382 ~~--~~~~~~~~~~~~~~~-~~~lvsg~~dg~--I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
.. +....+....+...+ ..+.++...... ...|+-+.+..+..--+-.....+++|. +..+.++-.+....+|
T Consensus 105 ~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~~~~~ii~ 182 (877)
T KOG2063|consen 105 TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLKKSYYIIN 182 (877)
T ss_pred cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeecceeEEEe
Confidence 11 111111222221111 123333332222 2234444443332221222222333332 2222222222222233
Q ss_pred ECCCCcEE--EEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007768 457 EFGIPVVI--KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 457 dl~~~~~~--~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
.-.++... ..........-+.|+..+++..++.+ .|+...+-|............+... ...+. -+..|+
T Consensus 183 ~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~~~~l~ws~~-----P~~v~--~~~PYl 254 (877)
T KOG2063|consen 183 NTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQRGTLVWSEV-----PLSVV--VESPYL 254 (877)
T ss_pred cCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccCCCceEeccc-----chhhc--ccCceE
Confidence 22222111 11111113334455555666556655 6676666665432211111111110 11111 145577
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEEe
Q 007768 535 MSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
++-+.. .|.||+..++.+++++.
T Consensus 255 Ia~~~~-~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 255 IALLDR-SVEIRSKLDGQLVQSIT 277 (877)
T ss_pred EEEccc-cEEEEeccCHHHhhccc
Confidence 666544 99999999998888873
No 448
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.89 E-value=15 Score=37.84 Aligned_cols=149 Identities=13% Similarity=0.195 Sum_probs=86.9
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCc------EEEEECCCC----cEEE-----EeecCCCC-------ceeEEEEcCCCC
Q 007768 428 HLGAVNTITFVDSNRRFVTSSDDKS------LRVWEFGIP----VVIK-----YISEPHMH-------SMPSISLHPNTN 485 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~Dg~------I~iwdl~~~----~~~~-----~~~~~~~~-------~i~~i~~sp~g~ 485 (590)
..+.+..|.+.+++..+++.+++|. ++.+.+... ..+. .+..+... -.-+|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4467788999977778888888888 766665441 1111 11111111 234788877888
Q ss_pred EEEEEEcC------CeEEEEEcCCceeeccc---ccc-------cCcccccceEEEEEcCCCCEEEEEcC-----CC---
Q 007768 486 WLAAQSLD------NQILIYSTRERFQLNKK---KRF-------AGHIVAGYACQVNFSPDGRFVMSGDG-----EG--- 541 (590)
Q Consensus 486 ~la~~s~d------g~I~iwd~~~~~~~~~~---~~~-------~~~~~~~~v~~v~~spdg~~l~sgs~-----dg--- 541 (590)
++++.-.+ ..|+.++.. +.....+ ..+ .+.......-.++++|+|+.|+++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88777667 788888876 3322222 111 22334455778999999996665532 22
Q ss_pred --------cEEEEeCCC-CeEEEEE--ec-------CCCcEEEEEEcCCCCCEEE
Q 007768 542 --------KCWFWDWKS-CKVFRTL--KC-------HEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 542 --------~I~iwd~~t-~~~~~~l--~~-------h~~~V~~v~~sp~~~~~l~ 578 (590)
.|..||..+ +.....+ .. ....|..+.+.+ ++.+|+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLv 230 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLV 230 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEE
Confidence 234455554 3222222 21 245688898888 454544
No 449
>PLN02153 epithiospecifier protein
Probab=90.82 E-value=22 Score=36.69 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=32.6
Q ss_pred cEEEEEECC-----CeEEEEeCCCCceEE--EEcC---cCCceeEEEEeCCCCEEEEEeCC-----------CcEEEEEC
Q 007768 400 NILLAGMSD-----KKIVQWDMNTKEITQ--EYDQ---HLGAVNTITFVDSNRRFVTSSDD-----------KSLRVWEF 458 (590)
Q Consensus 400 ~~lvsg~~d-----g~I~iwD~~t~~~~~--~~~~---h~~~V~~i~~~p~~~~l~s~s~D-----------g~I~iwdl 458 (590)
.+++.|+.+ ..+.+||+.+.+-.. .+.. ........+..-+++.++.|+.+ ..|.+||.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~ 166 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence 566777643 357889988764322 1110 11111112222355667777653 24777888
Q ss_pred CCCc
Q 007768 459 GIPV 462 (590)
Q Consensus 459 ~~~~ 462 (590)
.+..
T Consensus 167 ~~~~ 170 (341)
T PLN02153 167 ADGK 170 (341)
T ss_pred CCCe
Confidence 7654
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=7 Score=43.49 Aligned_cols=177 Identities=11% Similarity=0.150 Sum_probs=92.7
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEe----ccCCCCeEEEEEccCCCEEEEEecCCeEEEE-ECCC
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY----MGHSKAVRDISFCNDGTKFLTASYDKNIKYW-DTET 374 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~----~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW-d~~t 374 (590)
+.+-.+.|+.+ +.|++-..+|+++||++ .+..+..+ ......|..+.|..+|-.+++.+ |.+.+- +.+.
T Consensus 84 ~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~--~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~--g~v~~i~~~~~ 157 (829)
T KOG2280|consen 84 GELIGMGWSDD--EELICVQKDGTVHVYGL--LGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS--GQVILINGVEE 157 (829)
T ss_pred CCeeeecccCC--ceEEEEeccceEEEeec--chhhhcccccccccccCceeEEEEecCceEEEecC--CcEEEEcCCCc
Confidence 47888999977 67778889999999998 34444332 12233466666655664444443 444443 3332
Q ss_pred CcEEEEecC---CCcc-eEEEEecCCCCCcEEEEEE-CCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007768 375 GQVIRTFST---GKIP-YVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 375 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
. .++.+.. .... .+..+...+.....++-.. ..+ ..++..... .....+....+.+..|..+|+.++|+.-.
T Consensus 158 ~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt 235 (829)
T KOG2280|consen 158 P-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYT 235 (829)
T ss_pred c-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEe
Confidence 1 2222211 1111 2233333222212222111 111 111111111 11122222346678899999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCC
Q 007768 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT 484 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g 484 (590)
..|.|.+-+.+..+....+..+.......++|..+.
T Consensus 236 ~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 236 ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred cCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 999999988877666655543333334456665433
No 451
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.75 E-value=23 Score=36.93 Aligned_cols=196 Identities=12% Similarity=0.195 Sum_probs=105.9
Q ss_pred EEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC----CCCE--EEEEe-CC---CcEEEEEC
Q 007768 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD----SNRR--FVTSS-DD---KSLRVWEF 458 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p----~~~~--l~s~s-~D---g~I~iwdl 458 (590)
.+-.+|......+++.....+-+.+||+.- +.++.+. .+.++.+.... .++. |+.++ .+ .+|++|.+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 455666666677899999999999999974 4556553 34555554421 2332 34443 22 46999987
Q ss_pred CC-CcEEEEeecC------CCCceeEEEEc--C-CCC-EEEEEEcCCeEEEEEcCC---ce-eecccccccCcccccceE
Q 007768 459 GI-PVVIKYISEP------HMHSMPSISLH--P-NTN-WLAAQSLDNQILIYSTRE---RF-QLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 459 ~~-~~~~~~~~~~------~~~~i~~i~~s--p-~g~-~la~~s~dg~I~iwd~~~---~~-~~~~~~~~~~~~~~~~v~ 523 (590)
.. ...+..+..+ ....+..+|+. + +|. ++++...+|.+..|-+.. +. .....+.|. ....+-
T Consensus 135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---~~sQ~E 211 (381)
T PF02333_consen 135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---VGSQPE 211 (381)
T ss_dssp ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EE
T ss_pred cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec---CCCcce
Confidence 53 2234443221 12235566663 3 344 566677889888887742 11 111122222 234566
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCC-----CeEEEEEec--CCCcEEEEEEcC--CCCCEE-EEEeCCCcEEEcC
Q 007768 524 QVNFSPDGRFVMSGDGEGKCWFWDWKS-----CKVFRTLKC--HEGVCIGCEWHP--LEQSKV-ATCGWDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t-----~~~~~~l~~--h~~~V~~v~~sp--~~~~~l-~s~g~Dg~I~iWD 590 (590)
.+.......+|+.|-.+.-|+-|+... +.++....+ ....|-.+++-. ++..+| +|.-.+++..|||
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 678888888999999998888888752 233333322 234677777643 233344 4444567777775
No 452
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.74 E-value=39 Score=39.41 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=66.4
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEe--ccCCCCeEEEEEccCC------CEEEEEecCCeEEEEECCCCcEEEEecC-
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCNDG------TKFLTASYDKNIKYWDTETGQVIRTFST- 383 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fspdg------~~l~s~s~Dg~I~vWd~~t~~~~~~~~~- 383 (590)
..++.+-..|.+..+....++++.... ..-...|.|+++.+++ ++++.++.|+.+++..+.-..++..+..
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 455555556666666554344443333 2235678899998754 5799999999999999987777776654
Q ss_pred --CCcceEEEEecCCCC------CcEEEEEECCCeEEEE--eCCCCc
Q 007768 384 --GKIPYVVKLNPDDDK------QNILLAGMSDKKIVQW--DMNTKE 420 (590)
Q Consensus 384 --~~~~~~~~~~~~~~~------~~~lvsg~~dg~I~iw--D~~t~~ 420 (590)
+..+..+++...... +-++.+|-.+|.+.-+ |.-+|.
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~ 676 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQ 676 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccc
Confidence 233333333332221 3467778788876554 334453
No 453
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.60 E-value=23 Score=36.56 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=24.9
Q ss_pred cEEEEEECC-----------CeEEEEeCCCCceEEEEcCcCCceeE--EEEeCCCCEEEEEeCC
Q 007768 400 NILLAGMSD-----------KKIVQWDMNTKEITQEYDQHLGAVNT--ITFVDSNRRFVTSSDD 450 (590)
Q Consensus 400 ~~lvsg~~d-----------g~I~iwD~~t~~~~~~~~~h~~~V~~--i~~~p~~~~l~s~s~D 450 (590)
.+.+.|+.+ ..+..||..+.+-...-......... ....-+++.++.|+.+
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 567777653 24777888776432221111111111 1112367777777754
No 454
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=16 Score=34.49 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=92.6
Q ss_pred CCEEEEEeCC--CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEE-EecCCeEEEEECCCCcEEEEecCCCcce
Q 007768 312 GHLILSAGMD--TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKNIKYWDTETGQVIRTFSTGKIPY 388 (590)
Q Consensus 312 g~~L~sgs~D--g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg~I~vWd~~t~~~~~~~~~~~~~~ 388 (590)
++++.+.+.- ..|++||+ ..++.+....-....+..=-...-|.+|.. .-.+|.-.++|..+.+++..+.-....+
T Consensus 56 g~i~esTG~yg~S~ir~~~L-~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDL-TTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEec-cCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 6778777653 46999999 556655543222112211111112333332 3357888899999999998887766665
Q ss_pred EEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE----cC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 007768 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY----DQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV 463 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~----~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~ 463 (590)
.++.. + .-|+.+.....++.-|..+.....++ .+ .-..++-+.|. +|...+-.=.+..|...+..+++.
T Consensus 135 gLt~d--~---~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 GLTSD--D---KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred eeecC--C---cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 55432 2 22666666677888787765433222 21 12234445554 344444333334444445555544
Q ss_pred EEEee-----------cCCCCceeEEEEcCCCCEEEE
Q 007768 464 IKYIS-----------EPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 464 ~~~~~-----------~~~~~~i~~i~~sp~g~~la~ 489 (590)
+..+. ..+..-...|++.|++..|+.
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 44332 123345677888888744443
No 455
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.19 E-value=26 Score=36.60 Aligned_cols=144 Identities=13% Similarity=0.194 Sum_probs=76.2
Q ss_pred CCeeEEEEcCCCCCEEEEEe-----------CCC-cEEEEecCC-CCee--EEEeccCCCCeEEEEEccCCCEEEEEecC
Q 007768 300 KGVSAIRFFPKYGHLILSAG-----------MDT-KVKIWDVVN-SGKC--MRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs-----------~Dg-~I~iWd~~~-~~~~--~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
.....|+|.++ |+++++-. ..+ .|.+++-.+ +++. ...+.......+.|+|.++| +++ ++..
T Consensus 14 ~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 34677899998 77776643 223 676665422 3332 23444344456889999888 444 4444
Q ss_pred CeEEEEECCCC-----c--EE-EEecC-----CCcceEEEEecCCCCCcEEEEEEC-------------------CCeEE
Q 007768 365 KNIKYWDTETG-----Q--VI-RTFST-----GKIPYVVKLNPDDDKQNILLAGMS-------------------DKKIV 412 (590)
Q Consensus 365 g~I~vWd~~t~-----~--~~-~~~~~-----~~~~~~~~~~~~~~~~~~lvsg~~-------------------dg~I~ 412 (590)
..+++.|.... + .+ ..+.. .+....+.+.+++ .+.++-+. .|.|.
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG---~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG---WLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC---CEEEecccCCCceeccCCCccCcccccCceEE
Confidence 43344455321 1 11 22322 2334456666543 33333221 14566
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 413 iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
.++..+++....-.+ ......++|+++++++++-..+
T Consensus 168 r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 666665543322222 3345789999999887765433
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=7 Score=41.68 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=53.7
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE
Q 007768 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 424 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~ 424 (590)
.|..+..++.|..++-+|.+|.+.++=.+..-.-..+..++....+...+-+. .|++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~---~~ftss------------------ 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE---RFFTSS------------------ 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc---eeeccC------------------
Confidence 46778888999999888888866554322222222333333322222222211 111111
Q ss_pred EcCcCCceeEEEEeCCC---CEEEEEeCCCcEEEEECCCCcEE
Q 007768 425 YDQHLGAVNTITFVDSN---RRFVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 425 ~~~h~~~V~~i~~~p~~---~~l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
..-.+....|+|+. ..|+.-+.|..||+||+.....+
T Consensus 164 ---~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 ---TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ---CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 11134456777764 56777778899999998776655
No 457
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.02 E-value=2.6 Score=46.43 Aligned_cols=66 Identities=21% Similarity=0.405 Sum_probs=43.5
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
.+++|.-+|. +.-+++++.||.|++|+.. .....+ +-....+-..+.|...| |+++..|+.+.-|.
T Consensus 16 ~~~aiqshp~-~~s~v~~~~d~si~lfn~~-~r~qsk-i~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 16 FTTAIQSHPG-GQSFVLAHQDGSIILFNFI-PRRQSK-ICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeeecCC-CceEEEEecCCcEEEEeec-ccchhh-hhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 4677888888 8999999999999999983 222211 11122333456665544 66666777777775
No 458
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=89.91 E-value=27 Score=41.54 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=42.5
Q ss_pred cCCCCCeeEEEEcCC--CCC----EEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEc---c-CCCEEEEEecCC
Q 007768 296 SGHTKGVSAIRFFPK--YGH----LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFC---N-DGTKFLTASYDK 365 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~--~g~----~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs---p-dg~~l~s~s~Dg 365 (590)
.||...|.|..+.-. +.. ..+..+-||.+.|=|. ..++.+.......+-+... + ..-++|..--||
T Consensus 344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf----NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg 419 (1899)
T KOG4659|consen 344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF----NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG 419 (1899)
T ss_pred CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc----hheeeecCCCceEEEEEecCCCccceeEEEecCcCc
Confidence 468777777665421 112 2345677888888665 3344333222222222222 1 122555556677
Q ss_pred eEEEEECCCCcEEEE
Q 007768 366 NIKYWDTETGQVIRT 380 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~ 380 (590)
++.|=|..+.+..+.
T Consensus 420 tlyvSdp~s~qv~rv 434 (1899)
T KOG4659|consen 420 TLYVSDPLSKQVWRV 434 (1899)
T ss_pred eEEecCCCcceEEEe
Confidence 787777776665544
No 459
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=11 Score=39.67 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCC--cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc
Q 007768 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 509 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~ 509 (590)
-+.+-|...++.|++.. .|.+.-|-...+ .....+.....++|.++.|++|.+.||+.-.++.|.+++........
T Consensus 25 sngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l- 102 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL- 102 (657)
T ss_pred ccceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-
Confidence 34555655555544443 455566655332 12222223456799999999999999999999999999874322111
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeEEEEEecCCCcEEEEEEcCCCCCEEE
Q 007768 510 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
............|...+|+.. .-++.-...| +-+|-... .+.++..+.|.-.|.=..|.+ +...++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~L 169 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVIL 169 (657)
T ss_pred HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEe
Confidence 111111222344667888776 4444444443 55555433 233455556777777778888 454433
No 460
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.10 E-value=24 Score=34.71 Aligned_cols=151 Identities=11% Similarity=0.114 Sum_probs=83.2
Q ss_pred cceEEEEecCCCCCcEEEEEE--CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEE-CCCCc
Q 007768 386 IPYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE-FGIPV 462 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~--~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd-l~~~~ 462 (590)
......+++++. .+.++.. ....|+++.. +....... ....+..-.|.+++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~--~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGS--RVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCC--eEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 344556666543 3333332 3344555443 32222221 233778889999987777666666666663 22222
Q ss_pred E-EEEeecCCCC-ceeEEEEcCCCCEEEEEEc---CCeEEEEEcCCcee-----ecccccccCcccccceEEEEEcCCCC
Q 007768 463 V-IKYISEPHMH-SMPSISLHPNTNWLAAQSL---DNQILIYSTRERFQ-----LNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 463 ~-~~~~~~~~~~-~i~~i~~sp~g~~la~~s~---dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
. ...+..+... .|..+.++|+|..++.... ++.|.+--+..... +...... .......+..+.|.+++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~-~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV-APPLLSDVTDVAWSDDST 178 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe-cccccCcceeeeecCCCE
Confidence 2 2222222222 8999999999998887763 47777765431111 1000011 111134677899999999
Q ss_pred EEEEEcCCCc
Q 007768 533 FVMSGDGEGK 542 (590)
Q Consensus 533 ~l~sgs~dg~ 542 (590)
+++.+...+.
T Consensus 179 L~V~~~~~~~ 188 (253)
T PF10647_consen 179 LVVLGRSAGG 188 (253)
T ss_pred EEEEeCCCCC
Confidence 8887765443
No 461
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.94 E-value=9.5 Score=37.26 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=80.4
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC---CcEEEEECCC---CcEEEEee--cCCCCceeEEEEcC
Q 007768 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD---KSLRVWEFGI---PVVIKYIS--EPHMHSMPSISLHP 482 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D---g~I~iwdl~~---~~~~~~~~--~~~~~~i~~i~~sp 482 (590)
-.+||+.+++....--...-.+.+-.+.++|++|++|+.. ..+++++... ........ -.....-.++..-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578998876543322233334445677899999988752 3578887543 11111110 01223344566678
Q ss_pred CCCEEEEEEcCCe-EEEEEcCCc-e---eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE
Q 007768 483 NTNWLAAQSLDNQ-ILIYSTRER-F---QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 483 ~g~~la~~s~dg~-I~iwd~~~~-~---~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
+|+.|++|+.... ..+|..... . .+..............--.+-..|+|++++.+..+ -.|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 9999999887743 334433111 0 11001101001111112236778999999998865 456688888777666
Q ss_pred ec
Q 007768 558 KC 559 (590)
Q Consensus 558 ~~ 559 (590)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 53
No 462
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=88.43 E-value=43 Score=36.68 Aligned_cols=251 Identities=13% Similarity=0.086 Sum_probs=116.8
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCe-eEEEeccC-CCCeEEEEEccCC-CEEEEEec--CCeEEEEECCCCcEEEEecCC
Q 007768 310 KYGHLILSAGMDTKVKIWDVVNSGK-CMRTYMGH-SKAVRDISFCNDG-TKFLTASY--DKNIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 310 ~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~~h-~~~V~~l~fspdg-~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~~ 384 (590)
..+..++.+..+|.+....+...+. ......+. .....++++..+| .+|+.||. |+.+.-|....-+.+..+..-
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~ 299 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNW 299 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCc
Confidence 3478899999999999888744332 22333333 5556777777655 36666665 556666665566677777777
Q ss_pred CcceEEEEecCC-CCCc------EEEEEE---CCCeEEEEeCCCCce--EEEEcCcCCceeEEEEeCC----CCEEEEEe
Q 007768 385 KIPYVVKLNPDD-DKQN------ILLAGM---SDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDS----NRRFVTSS 448 (590)
Q Consensus 385 ~~~~~~~~~~~~-~~~~------~lvsg~---~dg~I~iwD~~t~~~--~~~~~~h~~~V~~i~~~p~----~~~l~s~s 448 (590)
.+...+++.... .... .+++++ .+|.|+++.-.-+-. ........+ +..+-..+. +.+|+.+.
T Consensus 300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp -SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEE
T ss_pred CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEc
Confidence 777666665332 1121 455544 467888763221111 111111122 333333322 45666666
Q ss_pred CCCcEEEEECC---CCcEEEEeec-CC---CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 449 DDKSLRVWEFG---IPVVIKYISE-PH---MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 449 ~Dg~I~iwdl~---~~~~~~~~~~-~~---~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
.+. -+++.+. ....+..+.. .- ...+.+-.+. +..++=. ....|++.+.............. ...
T Consensus 379 ~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQV-t~~~i~l~~~~~~~~~~~w~~~~----~~~ 450 (504)
T PF10433_consen 379 PNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQV-TPKGIRLIDLEDGKLTQEWKPPA----GSI 450 (504)
T ss_dssp SSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEE-ESSEEEEEESSSTSEEEEEE-TT----S--
T ss_pred CCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEE-ecCeEEEEECCCCeEEEEEeCCC----CCe
Confidence 544 3455553 2333322211 11 1112222221 2222222 23457777765543332221111 222
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe-c----CCCcEEEEEEcC
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-C----HEGVCIGCEWHP 571 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-~----h~~~V~~v~~sp 571 (590)
|...+. .+.+++.+..++.+..+.+.......... . ....|.|+...|
T Consensus 451 I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 333333 44677777778889999887776643332 1 356788887766
No 463
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.39 E-value=25 Score=33.89 Aligned_cols=143 Identities=12% Similarity=0.119 Sum_probs=85.3
Q ss_pred CCCeEEEEEccCCCEEEEEecC---------CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEE
Q 007768 343 SKAVRDISFCNDGTKFLTASYD---------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~D---------g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 413 (590)
....++-..+|+|++++-.-.| |.++.|-.. ++....+..-.....+.|. .+...+.++-+.+-.|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCcccccc--ccCcEEEEEccCceEEee
Confidence 3456677788999985432222 344444332 2222222222233334444 344466677777888877
Q ss_pred Ee--CCCCce-----EEEEcC----cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC
Q 007768 414 WD--MNTKEI-----TQEYDQ----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 414 wD--~~t~~~-----~~~~~~----h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp 482 (590)
|| ..+|.+ +..++. ..-.--.+++.-+|++++++-..++|...|..+++.+..+..+ ...|++++|--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 77 555532 222221 1111234555668889999999999999999999999998875 66899999853
Q ss_pred C-CCEEEE
Q 007768 483 N-TNWLAA 489 (590)
Q Consensus 483 ~-g~~la~ 489 (590)
. -..|++
T Consensus 264 kn~d~~yv 271 (310)
T KOG4499|consen 264 KNLDILYV 271 (310)
T ss_pred CCccEEEE
Confidence 3 234444
No 464
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.31 E-value=38 Score=35.88 Aligned_cols=151 Identities=12% Similarity=0.099 Sum_probs=81.9
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec--c
Q 007768 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--K 509 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~--~ 509 (590)
...+..++++.+++.+..-..++-||-... ....+..+....+.++.+.+++.+++++ ..|.+.. ....+.... .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 344556677766666554333333443221 1123333556678999999998887765 5565544 222221100 1
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe---cCCCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 510 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
+....-......+..+.|.+++..+++| ..|.+.... ..|+...... .-....+.+.|.+ +. .....|.+|.|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~-~g~~~G~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DK-KGFVLGNDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CC-ceEEEeCCcEE
Confidence 1111111112346778899888777666 466665553 4555544433 2234678999876 33 45556678888
Q ss_pred EEc
Q 007768 587 KYW 589 (590)
Q Consensus 587 ~iW 589 (590)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 465
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.27 E-value=43 Score=36.47 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=74.2
Q ss_pred CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCC--CceeEEEEcCCC
Q 007768 407 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM--HSMPSISLHPNT 484 (590)
Q Consensus 407 ~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~--~~i~~i~~sp~g 484 (590)
..+.+.++|.. |.++..+.........+...++|.+++..+ ..++.+|+-.. .+.....+.. ..=..+..-|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECCCC
Confidence 45666777754 455555543333333367778887776655 77888888543 3333332221 112456777899
Q ss_pred CEEEEEEc--------------C---------CeEEEEEcCCceeeccc-----------ccccCcccccceEEEEEcC-
Q 007768 485 NWLAAQSL--------------D---------NQILIYSTRERFQLNKK-----------KRFAGHIVAGYACQVNFSP- 529 (590)
Q Consensus 485 ~~la~~s~--------------d---------g~I~iwd~~~~~~~~~~-----------~~~~~~~~~~~v~~v~~sp- 529 (590)
++|+.+.. | ..|..|++..-...... ........-..+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 98888772 1 12334444332111111 0000111113467899988
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
++.+|+|+-.-..|...|.++++....+-.|.
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 66666666666789999999999988887654
No 466
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.06 E-value=0.093 Score=54.76 Aligned_cols=149 Identities=10% Similarity=0.112 Sum_probs=100.8
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEE-EEEcCCeEEEEEcCCcee
Q 007768 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la-~~s~dg~I~iwd~~~~~~ 506 (590)
+........|-+.+..++.++.+..+..||-.... ...+ ........++|.-++..++ .+-..+.+.+||+.+...
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILEL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhcce-eccc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 33344456677777778888888889999853332 2222 2334456677877776544 455678999999976432
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
.. ..+.+.... . -+.|++.+..++.|...|.+.|++..+.+.+...--|...+++++|.+ ++ +++.++.|..+
T Consensus 110 qq--LE~gg~~s~-s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l-Ed-~vil~dcd~~L 182 (615)
T KOG2247|consen 110 QQ--LESGGTSSK-S--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL-ED-YVILCDCDNTL 182 (615)
T ss_pred HH--HhccCcchH-H--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc-cc-eeeecCcHHHH
Confidence 21 112221111 1 178999999999999999999999888877766655888999999998 43 67777766543
No 467
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.60 E-value=25 Score=40.77 Aligned_cols=158 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEec----CCCCeeEEEeccCCCCe------E----EEEEccCCCEEEEEecC
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDV----VNSGKCMRTYMGHSKAV------R----DISFCNDGTKFLTASYD 364 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~----~~~~~~~~~~~~h~~~V------~----~l~fspdg~~l~s~s~D 364 (590)
..+...++|+|.....||.....|.-.||++ ......++....+.+.| . .|.|.++-+.|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Q ss_pred CeEEEEECCCCcEEE-EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC----CceEEEEcCcCCc------ee
Q 007768 365 KNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGA------VN 433 (590)
Q Consensus 365 g~I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t----~~~~~~~~~h~~~------V~ 433 (590)
..+.++|+++..... .........++.+...+.+...++.-.+ ..|...++.. ...+..+++...+ ++
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~ 302 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLS 302 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccCCCCCeeeeeecccccCCCCCceEEE
Q ss_pred EEEE-eCCCCEEEEEeCCCcEEEEEC
Q 007768 434 TITF-VDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 434 ~i~~-~p~~~~l~s~s~Dg~I~iwdl 458 (590)
.... ...--.++.......|.+|.+
T Consensus 303 ~~~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 303 VQKVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred EEEcCCCEEEEEEEcCCCCcEEEEEE
No 468
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.49 E-value=3.1 Score=40.11 Aligned_cols=71 Identities=8% Similarity=0.130 Sum_probs=49.9
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc----ccC-----cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 479 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR----FAG-----HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 479 ~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~----~~~-----~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.+..++.+|++.+.+|.+++||+.+......... +.. ......|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3556788999999999999999988765433211 110 02345677888898888777654 5788999864
Q ss_pred C
Q 007768 550 S 550 (590)
Q Consensus 550 t 550 (590)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
No 469
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.30 E-value=2.3 Score=29.20 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.7
Q ss_pred CceeEEEEeCCCC---EEEEEeCCCcEEEEECCCC
Q 007768 430 GAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 430 ~~V~~i~~~p~~~---~l~s~s~Dg~I~iwdl~~~ 461 (590)
++|.++.|+|.+. +|+.+-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999998554 8888888899999999853
No 470
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.10 E-value=42 Score=35.14 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=24.6
Q ss_pred cEEEEEECC-----------CeEEEEeCCCCceEEEEcCcCCce--eEEEEeCCCCEEEEEeCC
Q 007768 400 NILLAGMSD-----------KKIVQWDMNTKEITQEYDQHLGAV--NTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 400 ~~lvsg~~d-----------g~I~iwD~~t~~~~~~~~~h~~~V--~~i~~~p~~~~l~s~s~D 450 (590)
.+++.|+.. ..+..||..+.+-...-....... .+....-+++.++.|+.+
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566666643 247788887764322111001111 112221366777777754
No 471
>PRK13684 Ycf48-like protein; Provisional
Probab=86.93 E-value=40 Score=34.72 Aligned_cols=141 Identities=9% Similarity=-0.047 Sum_probs=72.8
Q ss_pred EEEEEECCCeEEEEeCCCCceEEEE-cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC---CCCcee
Q 007768 401 ILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMP 476 (590)
Q Consensus 401 ~lvsg~~dg~I~iwD~~t~~~~~~~-~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~~i~ 476 (590)
.+++.+..|.+..-.-..++....+ ..-...++++.+.++++.++++ ..|.+++=..+.+........+ ....+.
T Consensus 185 ~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~ 263 (334)
T PRK13684 185 KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYL 263 (334)
T ss_pred eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCcccccccee
Confidence 3455555665553211122222222 2334678999999988776665 4576653223333333322222 234578
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 477 ~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
.+.+.+++..+++ +.+|.|. .....+..........+. ......+.|..+++.+++| ..|.|.-|+
T Consensus 264 ~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 264 DLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEV--PSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred eEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCC--CcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 8899988776554 4566554 334433332221111111 2245567777666665554 577777665
No 472
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.83 E-value=20 Score=38.41 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=62.4
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEee----cCCCCceeEEEEcCCC------CEEEEEE---
Q 007768 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYIS----EPHMHSMPSISLHPNT------NWLAAQS--- 491 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~--~~~~~----~~~~~~i~~i~~sp~g------~~la~~s--- 491 (590)
........|+|.|++++|++--..|.|++++...... +..+. .........|+++|+- .+|.+..
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 3455678899999997777666579999998654322 11111 1135668899999874 3444442
Q ss_pred -------cCCeEEEEEcCCc-eee-cccccccCc--ccccceEEEEEcCCCCEEEEEcCC
Q 007768 492 -------LDNQILIYSTRER-FQL-NKKKRFAGH--IVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 492 -------~dg~I~iwd~~~~-~~~-~~~~~~~~~--~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
....|.-|.+... ..+ .....+.+. .....-..|.|.|||.+.++.+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555554321 001 001111110 001224468899999876654433
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=8.9 Score=45.39 Aligned_cols=176 Identities=16% Similarity=0.279 Sum_probs=97.8
Q ss_pred cCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEc--------cCCCE
Q 007768 286 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFC--------NDGTK 357 (590)
Q Consensus 286 ~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs--------pdg~~ 357 (590)
-+|..++..+. |...-+.+-++|.=+..-+ +.|+.+.+|+. +++.....+.+-...|..|..- |.=++
T Consensus 66 ~IP~el~eq~~-~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny-~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iqh 141 (1311)
T KOG1900|consen 66 NIPDELLEQFS-NIECKTDMGIFPEIGRAWI--TIDNNLFLWNY-ESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQH 141 (1311)
T ss_pred cCCHHHHHHhc-CcceeeeeccchhhcceEE--EeCCeEEEEEc-CCCCccccccchhhhheeeeeecCCCCcchhhhhe
Confidence 36777777775 6666677778887444433 45788999999 4566666677777777766532 22223
Q ss_pred EEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEE
Q 007768 358 FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF 437 (590)
Q Consensus 358 l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~ 437 (590)
++..+.--.|.++-+.-. ........+.++ ..+......|+||..
T Consensus 142 lLvvaT~~ei~ilgV~~~------------------~~~~~~~~f~~~-----------------~~i~~dg~~V~~I~~ 186 (1311)
T KOG1900|consen 142 LLVVATPVEIVILGVSFD------------------EFTGELSIFNTS-----------------FKISVDGVSVNCITY 186 (1311)
T ss_pred eEEecccceEEEEEEEec------------------cccCcccccccc-----------------eeeecCCceEEEEEe
Confidence 332222223333321100 000000011111 112223445777776
Q ss_pred eCCCCEEEEEeCCCcEEEEECC--C--C---c-E----------------EEEeecCCCCceeEEEEcCCCCEEEEEEcC
Q 007768 438 VDSNRRFVTSSDDKSLRVWEFG--I--P---V-V----------------IKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~--~--~---~-~----------------~~~~~~~~~~~i~~i~~sp~g~~la~~s~d 493 (590)
..+|+.|++|-+ | .+|.+- . + . + +..+...+..+|..+++....+.+.+-+..
T Consensus 187 t~nGRIF~~G~d-g--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek 263 (1311)
T KOG1900|consen 187 TENGRIFFAGRD-G--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEK 263 (1311)
T ss_pred ccCCcEEEeecC-C--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccC
Confidence 666766665544 3 344331 0 0 0 0 111112356689999999989999999999
Q ss_pred CeEEEEEcCC
Q 007768 494 NQILIYSTRE 503 (590)
Q Consensus 494 g~I~iwd~~~ 503 (590)
+.|.+|++..
T Consensus 264 ~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 264 GTVSAYDIGG 273 (1311)
T ss_pred ceEEEEEccC
Confidence 9999999975
No 474
>PLN02193 nitrile-specifier protein
Probab=86.42 E-value=53 Score=35.62 Aligned_cols=147 Identities=10% Similarity=0.035 Sum_probs=72.9
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCcEEEEecCC---CcceEEEEecCCCCCcEEEEEECCC-----eEEEEeCCCCc
Q 007768 354 DGTKFLTASYD-----KNIKYWDTETGQVIRTFSTG---KIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKE 420 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~iwD~~t~~ 420 (590)
++.+++.|+.+ ..+.++|+.+.+........ ........... +..+++.|+.++ .+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 55666777665 35788898876654322211 11111111111 235677776543 46778887764
Q ss_pred eEEEEc---CcCCc-eeEEEEeCCCCEEEEEeCC----CcEEEEECCCCcEEEEeec---CCCCceeEEEEcCCCCEEEE
Q 007768 421 ITQEYD---QHLGA-VNTITFVDSNRRFVTSSDD----KSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 421 ~~~~~~---~h~~~-V~~i~~~p~~~~l~s~s~D----g~I~iwdl~~~~~~~~~~~---~~~~~i~~i~~sp~g~~la~ 489 (590)
-...-. ..... -.+++.. +++.++.++.+ ..|.+||+.+..-...... +......+++ .-++++++.
T Consensus 306 W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~ 383 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIF 383 (470)
T ss_pred EEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEE
Confidence 322110 00001 1122222 56677777655 4588999877654332211 1111122222 225667777
Q ss_pred EEcC--------------CeEEEEEcCCc
Q 007768 490 QSLD--------------NQILIYSTRER 504 (590)
Q Consensus 490 ~s~d--------------g~I~iwd~~~~ 504 (590)
|+.. +.+.+||+.+.
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcC
Confidence 7643 24788887654
No 475
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.33 E-value=12 Score=39.42 Aligned_cols=150 Identities=12% Similarity=0.079 Sum_probs=85.1
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecCC--CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec--
Q 007768 307 FFPKYGHLILSAGMDTKVKIWDVVN--SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-- 382 (590)
Q Consensus 307 ~sp~~g~~L~sgs~Dg~I~iWd~~~--~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~-- 382 (590)
|+.| .+.++.|-..|.+.=|-+.. +..++..-....++|.++.|++|.+.|++--.++.|.+++....+......
T Consensus 29 FfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ 107 (657)
T KOG2377|consen 29 FFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE 107 (657)
T ss_pred eecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence 4444 33333344445566676632 223344444556799999999999999999999999999884433322221
Q ss_pred C-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEe--CCCcEEEEEC
Q 007768 383 T-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSS--DDKSLRVWEF 458 (590)
Q Consensus 383 ~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s--~Dg~I~iwdl 458 (590)
+ .+...+..|.|... .-++.-.. ..+-+|-+... +.++..+.|.-.|+-..|.++.+.++.++ ..+++.=+-+
T Consensus 108 ck~k~~~IlGF~W~~s--~e~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 108 CKTKNANILGFCWTSS--TEIAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred hccCcceeEEEEEecC--eeEEEEec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 1 22233555555543 22333333 33444443322 33444566888899999998877544433 3344433444
Q ss_pred CC
Q 007768 459 GI 460 (590)
Q Consensus 459 ~~ 460 (590)
+.
T Consensus 185 ~~ 186 (657)
T KOG2377|consen 185 RA 186 (657)
T ss_pred ee
Confidence 33
No 476
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.98 E-value=4.3 Score=42.38 Aligned_cols=168 Identities=12% Similarity=0.111 Sum_probs=99.2
Q ss_pred CeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE-EecCCCcceE---EE--EecCCCCCcEEEEEE
Q 007768 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYV---VK--LNPDDDKQNILLAGM 406 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~---~~--~~~~~~~~~~lvsg~ 406 (590)
++.++.+......|..+-..|||+.|..-+. ..+.|+++.+..... .+.......+ +. .. --.++.-++++.
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~-lL~Gg~SLLv~~ 287 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLY-LLSGGFSLLVVH 287 (733)
T ss_pred hhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHH-HHhCceeEEEEc
Confidence 3444555556677888999999998887765 788888886543321 1111111100 00 00 001234588899
Q ss_pred CCCeEEEE-eCCCCc-----eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEE
Q 007768 407 SDKKIVQW-DMNTKE-----ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 407 ~dg~I~iw-D~~t~~-----~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
.||.|..| |.+.+. .++.++-...++.-+.-..+.+-|++-+..|++.++.....+.+... ..-..+.-+++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~ 365 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAM 365 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeee
Confidence 99999888 554331 12222222233333333334456888888898888775444333222 23336677899
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCce
Q 007768 481 HPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 481 sp~g~~la~~s~dg~I~iwd~~~~~ 505 (590)
+|++.++++- ..|.|+++.+.+..
T Consensus 366 Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 366 SPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred Ccccchheee-cCCceEEEEecCCC
Confidence 9999998874 45779999887653
No 477
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.54 E-value=5.1 Score=38.57 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=47.5
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEe------ec-------CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 437 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI------SE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~------~~-------~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
+...+.++++.+.+|.+++||+.+.+.+..- .. .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4456889999999999999999887654332 11 2445688888888887776654 5788888764
No 478
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.33 E-value=53 Score=38.38 Aligned_cols=174 Identities=15% Similarity=0.192 Sum_probs=92.5
Q ss_pred eEEEEECCCCcEEEEecCCCc-----ceEEEEecCCCCCcEEEEEE-----------CCCeEEEEeCC-CCceEEEEcC-
Q 007768 366 NIKYWDTETGQVIRTFSTGKI-----PYVVKLNPDDDKQNILLAGM-----------SDKKIVQWDMN-TKEITQEYDQ- 427 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lvsg~-----------~dg~I~iwD~~-t~~~~~~~~~- 427 (590)
.|++.|..+++.+..+..+.. ...+.|+... ...++++|. .+|.++.|++- .++.+.-+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~-~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSE-YQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCC-CceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 478888888877766654332 1222233322 223444443 24557777653 3342222211
Q ss_pred -cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC-CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007768 428 -HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 428 -h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~ 505 (590)
-.+.| .+..|...++++| -...+++||+...+.++...... ...|..+.+ .+..+++|...-.+.++..+...
T Consensus 933 ~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 933 EIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 12333 3445555555554 45789999998877665543323 344555555 45667777666556555443211
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 506 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 506 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
+.+..+.......+++.+.+ -|...++.++.-|.+++-.+
T Consensus 1008 --n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1008 --NQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred --CeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEEC
Confidence 11223333333445554433 35556777777787777754
No 479
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.75 E-value=36 Score=36.33 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
.+.+++..+..+.|++-+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 378899998889999999999999999974
No 480
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.70 E-value=4.6 Score=26.96 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=30.1
Q ss_pred cCCCEEEEEe-cCCeEEEEECCCCcEEEEecCCCcceEEEE
Q 007768 353 NDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKL 392 (590)
Q Consensus 353 pdg~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~ 392 (590)
|++++|+++. .++.|.++|..+++.+..+..+..+..+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4666666554 578999999999999988887766655544
No 481
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=84.41 E-value=71 Score=36.98 Aligned_cols=72 Identities=21% Similarity=0.125 Sum_probs=48.6
Q ss_pred CceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc----cc------cc--Cc--ccccceEEEEEcCCCCEEEEEc
Q 007768 473 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK----KR------FA--GH--IVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 473 ~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~----~~------~~--~~--~~~~~v~~v~~spdg~~l~sgs 538 (590)
..|.++....-+.+++....||.|.++|..+...+... .. .. |. .....+..++|||.+..++.-+
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 44667777777889999999999999998775443332 00 00 00 0011233488999999999999
Q ss_pred CCCcEE
Q 007768 539 GEGKCW 544 (590)
Q Consensus 539 ~dg~I~ 544 (590)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 998865
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.22 E-value=11 Score=42.32 Aligned_cols=95 Identities=11% Similarity=0.241 Sum_probs=49.4
Q ss_pred CCeEEEEEccCCCEEEEEecCC-----eEEEEECC---CCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEe
Q 007768 344 KAVRDISFCNDGTKFLTASYDK-----NIKYWDTE---TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg-----~I~vWd~~---t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD 415 (590)
+.-..++|-|+|..+++-+.|| .|+++.-+ -|..-............+|.... .+++....+.|.+|-
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s----~vlav~~~n~~~lwt 322 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS----TVLAVAEGNLLKLWT 322 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH----HHHHHhhcceEEEEE
Confidence 3344589999999999987665 24444321 12221122222222333343322 134445567888987
Q ss_pred CCCCceEEEEcCcCCceeEEEEeCCCC
Q 007768 416 MNTKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 416 ~~t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
..+-.--......-..+.-+.|+|...
T Consensus 323 tkNyhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 323 TKNYHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred ccceEEEEEEeecCCCcceeeeccccC
Confidence 765432222222344566677877543
No 483
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=83.43 E-value=74 Score=34.74 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=59.7
Q ss_pred CCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 459 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
.++..+..........|+.+++... ..+..++..+-+..|+..+. -.......+ ...+.++.+.=.|+++ |..|+
T Consensus 362 stG~~v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~--~avlde~ag-l~ss~V~aived~dns-LWIGT 436 (671)
T COG3292 362 STGELVRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNE--WAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGT 436 (671)
T ss_pred CCCcEEEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCc--ccccccccC-CcccceeeeeecCCCC-EEEec
Confidence 3344444433333445666666663 44555666645666655441 111111122 2246677788888888 78888
Q ss_pred CCCcEEEEeCCCCeEEEEEe--cC---CCcEEEEEEcCCCCCEEEEE
Q 007768 539 GEGKCWFWDWKSCKVFRTLK--CH---EGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~--~h---~~~V~~v~~sp~~~~~l~s~ 580 (590)
.+|.++. +.+.++....+. .| .+.|..+..-|++.-.|++|
T Consensus 437 s~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g 482 (671)
T COG3292 437 SGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG 482 (671)
T ss_pred cCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec
Confidence 8886653 334444333332 12 23456677777433334333
No 484
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.29 E-value=6.1 Score=43.82 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=44.7
Q ss_pred CCEEEEEeCCCcEEEEecCC---CCeeEEE-ec-c--------------------CCCCeEEEEEcc----CCCEEEEEe
Q 007768 312 GHLILSAGMDTKVKIWDVVN---SGKCMRT-YM-G--------------------HSKAVRDISFCN----DGTKFLTAS 362 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~---~~~~~~~-~~-~--------------------h~~~V~~l~fsp----dg~~l~s~s 362 (590)
...|+.+..||.+....... .+..... .. . -...+..++++. +..+|++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 56777778888888777643 2211111 11 0 123455666666 678999999
Q ss_pred cCCeEEEEECCCCcEEEEecC
Q 007768 363 YDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
.|+.||+||+.+++++.....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEET
T ss_pred CCCeEEEEECCCCeEEEEecc
Confidence 999999999999999776533
No 485
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.01 E-value=36 Score=36.24 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=25.2
Q ss_pred CceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 473 HSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 473 ~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
..|..+++.+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999899999999999999999964
No 486
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.94 E-value=65 Score=33.72 Aligned_cols=201 Identities=11% Similarity=0.167 Sum_probs=109.2
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceE-E--EEecCCCCCcEEEEEECC---CeEEEEeCC--CCceEEEE
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV-V--KLNPDDDKQNILLAGMSD---KKIVQWDMN--TKEITQEY 425 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~-~--~~~~~~~~~~~lvsg~~d---g~I~iwD~~--t~~~~~~~ 425 (590)
...+++....++-+.+||+. |+.+..+..+....+ + .|...+..-.++++...+ ..|++|.+. ++. +..+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 45678888888999999997 566666655443221 1 122222211233444433 468898664 343 3333
Q ss_pred cC-------cCCceeEEEEe--C-CCC-EEEEEeCCCcEEEEECC---CC----cEEEEeecCCCCceeEEEEcCCCCEE
Q 007768 426 DQ-------HLGAVNTITFV--D-SNR-RFVTSSDDKSLRVWEFG---IP----VVIKYISEPHMHSMPSISLHPNTNWL 487 (590)
Q Consensus 426 ~~-------h~~~V~~i~~~--p-~~~-~l~s~s~Dg~I~iwdl~---~~----~~~~~~~~~~~~~i~~i~~sp~g~~l 487 (590)
.. ....+..+|+- + ++. +.+....+|.+..|.+. .+ ..++.+.. ...+..|.......+|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCE
Confidence 21 12345667764 3 344 56677888988888774 22 34555543 4478889999888999
Q ss_pred EEEEcCCeEEEEEcCCceee--cccccccCcccccceEEEEE--cCCC-CEEE-EEcCCCcEEEEeCCC-CeEEEEEe
Q 007768 488 AAQSLDNQILIYSTRERFQL--NKKKRFAGHIVAGYACQVNF--SPDG-RFVM-SGDGEGKCWFWDWKS-CKVFRTLK 558 (590)
Q Consensus 488 a~~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~v~~v~~--spdg-~~l~-sgs~dg~I~iwd~~t-~~~~~~l~ 558 (590)
+.+-.+--|+-|+....... ..+....+.....-+-.|++ ..+| .||+ |.-.+++..||+... ...+..|.
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 99999988999987632211 11112222222334445555 3343 3554 444678899999865 34445553
No 487
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.92 E-value=55 Score=32.91 Aligned_cols=160 Identities=16% Similarity=0.281 Sum_probs=87.7
Q ss_pred CeEEEEeCCCCceEEEEcC------cCCceeEEEEeCCCC-----E-EEEEeCCCcEEEEECCCCcEEEEeecC------
Q 007768 409 KKIVQWDMNTKEITQEYDQ------HLGAVNTITFVDSNR-----R-FVTSSDDKSLRVWEFGIPVVIKYISEP------ 470 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~~~------h~~~V~~i~~~p~~~-----~-l~s~s~Dg~I~iwdl~~~~~~~~~~~~------ 470 (590)
-+|.+||+.++++++.+.- ..+.++.+.+..... + .++=+..+.|.|+|+.+++..+.....
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 3688899999988887642 234577888876322 3 333344468999999887766555321
Q ss_pred ------------CCCceeEEEEcC---CCCEEEEEEcCCeEEEEEcCCceee-----c------ccccccCcccccceEE
Q 007768 471 ------------HMHSMPSISLHP---NTNWLAAQSLDNQILIYSTRERFQL-----N------KKKRFAGHIVAGYACQ 524 (590)
Q Consensus 471 ------------~~~~i~~i~~sp---~g~~la~~s~dg~I~iwd~~~~~~~-----~------~~~~~~~~~~~~~v~~ 524 (590)
....+..++.+| ++++|..+...+. .+|.+.+.... . ....+ +.. .+....
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k-~~~s~g 190 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDK-GSQSDG 190 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----SECE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-ccc-CCCCce
Confidence 011255566655 5566666654432 23333221100 0 00111 110 123445
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCe---EEEEE-ecCC--CcEEEEEEcC
Q 007768 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCK---VFRTL-KCHE--GVCIGCEWHP 571 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~---~~~~l-~~h~--~~V~~v~~sp 571 (590)
++++++|.+.++--..+.|..|+....- .+..+ +... ..+.++.+.+
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP 243 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc
Confidence 8899999999898899999999987611 12222 2222 3567788876
No 488
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.48 E-value=79 Score=34.39 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=59.4
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc----eEEEEecCCCCCcEEEEEEC-------------CCeE
Q 007768 349 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP----YVVKLNPDDDKQNILLAGMS-------------DKKI 411 (590)
Q Consensus 349 l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~lvsg~~-------------dg~I 411 (590)
+.+.++|.+++..+ ..+..+|+. |+.+..+...... .-+...++ +++|+.+.. .-.|
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~n---Gn~L~l~~~~~~~~~~~~~~~~~D~I 226 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPN---GNLLILASETKYVDEDKDVDTVEDVI 226 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TT---S-EEEEEEETTEE-TS-EE---S-EE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCC---CCEEEEEeecccccCCCCccEecCEE
Confidence 66778888777655 788899985 6676666554422 22333333 366666651 2346
Q ss_pred EEEeCCCCceEEEEc--CcC-------------------------CceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCcE
Q 007768 412 VQWDMNTKEITQEYD--QHL-------------------------GAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVV 463 (590)
Q Consensus 412 ~iwD~~t~~~~~~~~--~h~-------------------------~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~~ 463 (590)
..+| .+|+.+..+. .|. --+++|.+.+....|+.++. -..|...|.++++.
T Consensus 227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 6777 7787776642 111 12788999985555555554 45788888777766
Q ss_pred EEEee
Q 007768 464 IKYIS 468 (590)
Q Consensus 464 ~~~~~ 468 (590)
.-.+.
T Consensus 306 ~Wilg 310 (477)
T PF05935_consen 306 KWILG 310 (477)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 55553
No 489
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.67 E-value=7.4 Score=25.92 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=29.2
Q ss_pred CCCCEEEEEc-CCCcEEEEeCCCCeEEEEEecCCCcEEEEEE
Q 007768 529 PDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 529 pdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
|++++|++++ .++.|.++|..+++.+..+..... -..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 5777776655 578999999999999888876433 345554
No 490
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.19 E-value=37 Score=29.75 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=71.2
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCC--------CcEEEEecCCCcceEEEEecCC--CCCcEEEEEECCCeEEEEeCCC
Q 007768 349 ISFCNDGTKFLTASYDKNIKYWDTET--------GQVIRTFSTGKIPYVVKLNPDD--DKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 349 l~fspdg~~l~s~s~Dg~I~vWd~~t--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvsg~~dg~I~iwD~~t 418 (590)
-.|......|++++.-|.|.|++... ...+..+.....+.+++.-+.. .....|+.|+ ...|..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 34555566788888889999998763 3456667777777777655542 3345566665 56788999987
Q ss_pred CceEEEEcCcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCcEE
Q 007768 419 KEITQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
..-+..- .-...|++|.+-. ...-++..+.+..|.-||.......
T Consensus 83 N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 6543322 2346677777642 1223444444667777776544433
No 491
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.15 E-value=41 Score=32.04 Aligned_cols=52 Identities=4% Similarity=0.060 Sum_probs=36.3
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d 493 (590)
..|+.+...+.|.+|++..........-+..+.|..+.++..|+||++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEee
Confidence 3444445667899999984433322223566889999999999999997544
No 492
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.76 E-value=7 Score=43.34 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=45.3
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCc----eeecc-----------ccccc------CcccccceEEEEEcC----CCCEEEE
Q 007768 482 PNTNWLAAQSLDNQILIYSTRER----FQLNK-----------KKRFA------GHIVAGYACQVNFSP----DGRFVMS 536 (590)
Q Consensus 482 p~g~~la~~s~dg~I~iwd~~~~----~~~~~-----------~~~~~------~~~~~~~v~~v~~sp----dg~~l~s 536 (590)
++...|+++..||.+........ ..... +..+. .......+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 46667888888888888776531 10000 00000 011123445566666 7789999
Q ss_pred EcCCCcEEEEeCCCCeEEEEEe
Q 007768 537 GDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 537 gs~dg~I~iwd~~t~~~~~~l~ 558 (590)
-+.|+.|++||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977654
No 493
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=80.62 E-value=69 Score=32.47 Aligned_cols=234 Identities=11% Similarity=0.055 Sum_probs=112.8
Q ss_pred CCEEEEEeCCCcEEEEecCCC-CeeEEEeccCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCcEE-----------
Q 007768 312 GHLILSAGMDTKVKIWDVVNS-GKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVI----------- 378 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~----------- 378 (590)
+.+|+.|+.+|...+. +... ....+.+ +...|+++...+.-+.|++-+ ....++++++..-...
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 3689999999955554 5222 3333333 466899999998777666554 3445999998432210
Q ss_pred ---EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC----ceEEEE---c-CcCCceeEEEEeCC--CCEEE
Q 007768 379 ---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEY---D-QHLGAVNTITFVDS--NRRFV 445 (590)
Q Consensus 379 ---~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~----~~~~~~---~-~h~~~V~~i~~~p~--~~~l~ 445 (590)
......+...+..+.........++++....+|.++..... .....+ . ....++..+..+++ ...+.
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 00112222223333322222345566666677777644322 111110 0 11123333333333 45677
Q ss_pred EEeCCCcEEEEECCCC--c--E--EEEeecCCC-CceeEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcc
Q 007768 446 TSSDDKSLRVWEFGIP--V--V--IKYISEPHM-HSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHI 517 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~--~--~--~~~~~~~~~-~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~ 517 (590)
.|+..+-..++++... . . ......... .++ ++..-+++.+|++ - +....+.|... .........+
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Llc-~-~~~~v~Vn~~G~~~~r~~~l~w---- 242 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLLC-Y-DEFGVFVNLYGKRRSRNPILHW---- 242 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEEE-E-CcEEEEEeCCCCccccceEEEc----
Confidence 7766423444554321 0 0 000000111 223 3333334444443 3 33444445543 1111111112
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec
Q 007768 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 559 (590)
.....++++. ..+|++-..+ .|.++++.++..++++..
T Consensus 243 -~~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 -EFMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred -CCcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 2233456665 4577666544 599999999999888874
No 494
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.49 E-value=12 Score=44.31 Aligned_cols=137 Identities=12% Similarity=0.199 Sum_probs=80.0
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCceeEEEE-cC-------CCCEEEEEEcCCeEEEEEcCCceeecccccccC----c
Q 007768 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISL-HP-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG----H 516 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~-sp-------~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~----~ 516 (590)
-|+.+.+|++.+......+. ...+.|..+.+ -| .=+++++...--.|.++-+.-.........+.. .
T Consensus 97 iDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 47889999999866665553 24445555443 22 223444444455566665432211111111221 1
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC----C----CeE----------------EEEEe-cCCCcEEEEEEcC
Q 007768 517 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK----S----CKV----------------FRTLK-CHEGVCIGCEWHP 571 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~----t----~~~----------------~~~l~-~h~~~V~~v~~sp 571 (590)
.....|.++....+|+.+++|- || .+|.+. . .++ +..+. .+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 3345678888888998887775 44 445431 1 111 11122 4566899999876
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 007768 572 LEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 572 ~~~~~l~s~g~Dg~I~iWD 590 (590)
...++.+-+.-|+|.+||
T Consensus 253 -SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 253 -SRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred -ccceeeeeccCceEEEEE
Confidence 667899999999999996
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.39 E-value=80 Score=33.06 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=16.7
Q ss_pred CCCEEEEEecCC-----------eEEEEECCCCcEEE
Q 007768 354 DGTKFLTASYDK-----------NIKYWDTETGQVIR 379 (590)
Q Consensus 354 dg~~l~s~s~Dg-----------~I~vWd~~t~~~~~ 379 (590)
++.+++.|+... .+..||..+.+...
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~ 120 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQK 120 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEe
Confidence 566777776542 46778887765444
No 496
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=80.17 E-value=74 Score=32.59 Aligned_cols=161 Identities=15% Similarity=0.251 Sum_probs=81.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCc------EEEEecCCCC---eeEE-----EeccCCC--------CeEEEEEccCCC
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTK------VKIWDVVNSG---KCMR-----TYMGHSK--------AVRDISFCNDGT 356 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~------I~iWd~~~~~---~~~~-----~~~~h~~--------~V~~l~fspdg~ 356 (590)
-++++.|.+.|+ +..+++.+.+|. +..+.+.... ..+. .+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~-~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPD-DGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCC-CCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 467899999986 456666677777 6555552211 1111 1111111 223566656666
Q ss_pred EEEEEecC------CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC
Q 007768 357 KFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG 430 (590)
Q Consensus 357 ~l~s~s~D------g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~ 430 (590)
++++.-.+ ..|..++.. |+.+..+..+... .+... +. .-.....
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~-----~~~~~-----------~~-------------~~~~~N~ 147 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAF-----LPDAN-----------GT-------------SGRRNNR 147 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEcccccc-----ccccC-----------cc-------------ccccCCC
Confidence 66665555 556666554 4444433211100 00000 00 1112445
Q ss_pred ceeEEEEeCCCCEEEEEeC-----CC---------cEEEEECC--C-CcEEE---EeecC-----CCCceeEEEEcCCCC
Q 007768 431 AVNTITFVDSNRRFVTSSD-----DK---------SLRVWEFG--I-PVVIK---YISEP-----HMHSMPSISLHPNTN 485 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~-----Dg---------~I~iwdl~--~-~~~~~---~~~~~-----~~~~i~~i~~sp~g~ 485 (590)
..-+|+++|+|+.|+++.. |+ .++++.+. . ..... +...+ ....+..+.+.++++
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 6778888888886665532 21 14555443 3 11121 11111 356788888888888
Q ss_pred EEEEE
Q 007768 486 WLAAQ 490 (590)
Q Consensus 486 ~la~~ 490 (590)
+|+.=
T Consensus 228 lLvLE 232 (326)
T PF13449_consen 228 LLVLE 232 (326)
T ss_pred EEEEE
Confidence 76653
No 497
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.79 E-value=72 Score=32.17 Aligned_cols=233 Identities=12% Similarity=0.102 Sum_probs=122.9
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEECC------CC-cEEEEecC------CCcceEEEEecCC---------CCCcEEE
Q 007768 346 VRDISFCNDGTKFLTASYDKNIKYWDTE------TG-QVIRTFST------GKIPYVVKLNPDD---------DKQNILL 403 (590)
Q Consensus 346 V~~l~fspdg~~l~s~s~Dg~I~vWd~~------t~-~~~~~~~~------~~~~~~~~~~~~~---------~~~~~lv 403 (590)
-+.|+|+|.+.+-++....+...+||.. .. ..+-.+.. ...+.-+.|+... .....++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999988888887778999999986 12 22223321 1223333333221 1123478
Q ss_pred EEECCCeEEEEeCCCCce-----EEEEcC-cCCce-eEEEEeC--CCCEEEEE-eCCCcEEEEECCCCcEE--EEeecC-
Q 007768 404 AGMSDKKIVQWDMNTKEI-----TQEYDQ-HLGAV-NTITFVD--SNRRFVTS-SDDKSLRVWEFGIPVVI--KYISEP- 470 (590)
Q Consensus 404 sg~~dg~I~iwD~~t~~~-----~~~~~~-h~~~V-~~i~~~p--~~~~l~s~-s~Dg~I~iwdl~~~~~~--~~~~~~- 470 (590)
.++.||+|.-|...-+.. ...+.. ..+.| ..+++.. .+.+|..+ -..++|.+||-.-.... ..+..+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998643221 122221 12333 3344442 24454444 45788888885332211 001111
Q ss_pred --CCCceeEEE------------EcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC------C
Q 007768 471 --HMHSMPSIS------------LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP------D 530 (590)
Q Consensus 471 --~~~~i~~i~------------~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp------d 530 (590)
.......|. -.++.+.=+.+..-|.|-+||+.... +.++ ...+.... -+.|+..| .
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l-~~r~-as~g~LNa--PWG~a~APa~FG~~s 260 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQL-LRRV-ASSGRLNA--PWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcE-EEEe-ccCCcccC--CceeeeChhhhCCCC
Confidence 011111111 11112111222234789999986543 2222 12223222 23355544 4
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeEEEEEecCCC------cEEEEEEcCC-----CCCEEEEEeC
Q 007768 531 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG------VCIGCEWHPL-----EQSKVATCGW 582 (590)
Q Consensus 531 g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~------~V~~v~~sp~-----~~~~l~s~g~ 582 (590)
|.+|+---.||+|..||..+++.+..+....+ ..+.+.|... ...+..+++-
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp 323 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGP 323 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCC
Confidence 66777666899999999999998888876543 3567777651 1235555554
No 498
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=79.61 E-value=1.4e+02 Score=35.57 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred ccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEE--------ecCCCCCcEEEEEEC---------CCeEEEE
Q 007768 352 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL--------NPDDDKQNILLAGMS---------DKKIVQW 414 (590)
Q Consensus 352 spdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~--------~~~~~~~~~lvsg~~---------dg~I~iw 414 (590)
+.|.+.+.--+....|.+.+..+++.+..+.......+.++ ........++++|.. .|.+++|
T Consensus 991 ~~de~~~~p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~ 1070 (1366)
T KOG1896|consen 991 SRDENVIHPEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIF 1070 (1366)
T ss_pred cccccccccccccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEE
Q ss_pred eC----------CCCceEEEE--cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC
Q 007768 415 DM----------NTKEITQEY--DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 415 D~----------~t~~~~~~~--~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp 482 (590)
|+ .+...+..+ ....++|..++=. +|..+.+-+ ..|.||+++....+.-+.- -.-++......-
T Consensus 1071 diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~l~~~~G--qKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~ 1146 (1366)
T KOG1896|consen 1071 DIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGHLLSSQG--QKIIVRKLDRDSELIGVAF-IDLPLYVHSMKV 1146 (1366)
T ss_pred EEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccEEEEccC--cEEEEEEeccCCcceeeEE-eccceeEEehhh
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE--------eCCCCeEE
Q 007768 483 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW--------DWKSCKVF 554 (590)
Q Consensus 483 ~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw--------d~~t~~~~ 554 (590)
-.++|+.|.--..|.+.........-.+..-.......+...+-..-..-++++++.++.|+++ .+.-.+++
T Consensus 1147 vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv 1226 (1366)
T KOG1896|consen 1147 VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLV 1226 (1366)
T ss_pred hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceee
Q ss_pred EEEecCCCcEEEEEE
Q 007768 555 RTLKCHEGVCIGCEW 569 (590)
Q Consensus 555 ~~l~~h~~~V~~v~~ 569 (590)
+.-.-|-+.+....|
T Consensus 1227 ~radfhvg~~vs~m~ 1241 (1366)
T KOG1896|consen 1227 RRADFHVGAHVSTMF 1241 (1366)
T ss_pred eeeeeEeccceeeeE
No 499
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.55 E-value=66 Score=38.40 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=26.5
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
|-......++|.|. .++++.+...|.|+++-.
T Consensus 33 G~~~~~~~~afD~~-q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 33 GFPSTPSALAFDPT-QGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCCCCCcceeeccc-cceEEEEEecccEEEecc
Confidence 33445677889998 899999999999999975
No 500
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.45 E-value=63 Score=36.61 Aligned_cols=261 Identities=13% Similarity=0.140 Sum_probs=118.6
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
|-+.++.+.|.-+.|..+ ..- .|.......+..+-.-...|...+||.|...++....+..|.+++.. -.+
T Consensus 75 hf~~~~~~~f~~~~gDii-~~~-------~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~-fd~ 145 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDII-HLV-------NDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKY-FDP 145 (1243)
T ss_pred hhhhhheeeEEecCCcEE-EEE-------cCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecc-ccc
Confidence 555666676666644432 222 22211112222233346789999999999988888888899888743 122
Q ss_pred EEEecCCC-----cceEEEEecCCCCCcEEEEEECCCeEEEEeC------CCCceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007768 378 IRTFSTGK-----IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM------NTKEITQEYDQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 378 ~~~~~~~~-----~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~------~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s 446 (590)
+..+.... ....+.+-|.... ..+ -| ..-.-.+-|. ..|.+... . ..-..|+|-.+..++++
T Consensus 146 ise~~L~~~dl~ef~khi~VgWgkke-tqf-rg-k~~raqlrdptmp~~vD~G~l~av-d---~~k~~i~wrgD~~y~~v 218 (1243)
T COG5290 146 ISEYHLKKSDLVEFGKHIRVGWGKKE-TQF-RG-KGARAQLRDPTMPYMVDYGDLFAV-D---TNKKIIFWRGDTEYNLV 218 (1243)
T ss_pred cchhhcchhHHHHhccceEeeecccc-hhc-cc-cchhhhccCCCCcccccccceeEe-e---CCceEEEEccCcceeee
Confidence 22211110 0011111111000 000 00 0000011111 01111100 0 01123455555555555
Q ss_pred EeCC----CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCe-----EEEEEcCCceeecccccccCcc
Q 007768 447 SSDD----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-----ILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 447 ~s~D----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~-----I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
+... ..+++|.-. ..+.....|..+.-..++|-|+|..+++-..||. |.+|..+. .+-.....-.+
T Consensus 219 ~r~Ee~prra~rvysre--g~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG-LrHGef~lr~~-- 293 (1243)
T COG5290 219 GRSEERPRRAFRVYSRE--GQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG-LRHGEFDLRVG-- 293 (1243)
T ss_pred cchhcccccceeeeccc--cccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC-cccCCccccCC--
Confidence 5432 235555421 1122233344455556899999999999876543 55554322 11111100000
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEE
Q 007768 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
....+..++|.-....++.+ ....|.+|-.++..-.......-..+.-+.|+|.....|.-.
T Consensus 294 ~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 294 CDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred chhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence 01223345555444444433 455799998776554433333334466788998555544443
Done!