Query 007768
Match_columns 590
No_of_seqs 1169 out of 2438
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 6.5E-43 2.2E-47 361.1 45.4 293 287-590 43-340 (340)
2 1vyh_C Platelet-activating fac 100.0 4.1E-43 1.4E-47 372.4 41.8 287 292-590 101-408 (410)
3 3ow8_A WD repeat-containing pr 100.0 2.5E-42 8.4E-47 354.2 43.0 290 290-590 23-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 2.6E-41 9E-46 351.3 44.9 292 289-590 54-354 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 2.6E-41 9E-46 343.4 40.9 288 290-587 4-297 (304)
6 4ery_A WD repeat-containing pr 100.0 1.8E-40 6E-45 337.7 45.4 293 289-590 13-309 (312)
7 3iz6_a 40S ribosomal protein R 100.0 4.2E-42 1.4E-46 360.7 33.3 296 288-590 55-372 (380)
8 3frx_A Guanine nucleotide-bind 100.0 1.7E-39 5.7E-44 332.6 43.0 288 290-590 8-314 (319)
9 1nr0_A Actin interacting prote 100.0 1.1E-39 3.7E-44 364.0 40.3 323 246-590 149-608 (611)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-39 8.3E-44 335.1 39.8 295 290-590 6-332 (345)
11 1nr0_A Actin interacting prote 100.0 1.3E-39 4.6E-44 363.2 40.0 336 246-590 61-564 (611)
12 4gqb_B Methylosome protein 50; 100.0 9.3E-40 3.2E-44 338.5 35.8 282 297-590 28-328 (344)
13 4g56_B MGC81050 protein; prote 100.0 8.3E-40 2.8E-44 340.5 33.3 283 296-590 39-340 (357)
14 4aow_A Guanine nucleotide-bind 100.0 7.3E-38 2.5E-42 320.6 44.7 289 290-590 29-334 (340)
15 1erj_A Transcriptional repress 100.0 2.9E-38 1E-42 333.0 42.0 289 292-590 58-386 (393)
16 2xzm_R RACK1; ribosome, transl 100.0 4.9E-38 1.7E-42 324.8 41.9 288 290-590 12-337 (343)
17 3zwl_B Eukaryotic translation 100.0 1.2E-37 4E-42 321.8 44.0 287 291-590 24-343 (369)
18 2ymu_A WD-40 repeat protein; u 100.0 1.3E-37 4.5E-42 343.2 44.2 309 250-590 268-577 (577)
19 2hes_X YDR267CP; beta-propelle 100.0 1.3E-37 4.5E-42 320.1 40.9 292 289-590 4-325 (330)
20 1sq9_A Antiviral protein SKI8; 100.0 2.2E-37 7.5E-42 324.6 36.7 288 290-590 7-392 (397)
21 3gre_A Serine/threonine-protei 100.0 5.1E-38 1.7E-42 334.7 32.1 299 288-590 51-437 (437)
22 1r5m_A SIR4-interacting protei 100.0 3.7E-37 1.3E-41 324.3 37.3 327 245-590 46-422 (425)
23 4a11_B DNA excision repair pro 100.0 4.4E-37 1.5E-41 322.3 37.6 300 288-590 32-362 (408)
24 2ymu_A WD-40 repeat protein; u 100.0 1.9E-36 6.4E-41 333.9 44.3 311 249-590 226-536 (577)
25 3ei3_B DNA damage-binding prot 100.0 5.9E-37 2E-41 320.6 38.3 291 288-590 62-379 (383)
26 3dm0_A Maltose-binding peripla 100.0 1.3E-36 4.5E-41 344.0 43.3 289 290-590 373-690 (694)
27 1gxr_A ESG1, transducin-like e 100.0 7.8E-36 2.7E-40 304.4 43.2 282 294-590 46-334 (337)
28 1vyh_C Platelet-activating fac 100.0 5.2E-37 1.8E-41 325.4 35.7 282 244-549 108-410 (410)
29 3odt_A Protein DOA1; ubiquitin 100.0 6.3E-36 2.2E-40 302.1 41.1 284 287-590 6-293 (313)
30 3i2n_A WD repeat-containing pr 100.0 1.3E-36 4.6E-41 313.0 35.9 297 288-590 7-350 (357)
31 2ynn_A Coatomer subunit beta'; 100.0 3E-36 1E-40 306.1 37.4 249 334-590 4-256 (304)
32 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-36 8E-41 313.3 35.2 284 295-590 4-358 (372)
33 3ow8_A WD repeat-containing pr 100.0 7.8E-36 2.7E-40 305.8 38.3 272 256-549 48-320 (321)
34 3frx_A Guanine nucleotide-bind 100.0 5.8E-36 2E-40 306.3 36.7 296 242-551 15-318 (319)
35 3k26_A Polycomb protein EED; W 100.0 2.9E-36 9.9E-41 311.3 31.4 290 293-590 12-363 (366)
36 1got_B GT-beta; complex (GTP-b 100.0 3.5E-35 1.2E-39 303.1 38.4 283 242-547 53-340 (340)
37 3dwl_C Actin-related protein 2 100.0 5.8E-37 2E-41 319.6 24.5 287 294-590 6-376 (377)
38 4e54_B DNA damage-binding prot 100.0 1.1E-36 3.9E-41 325.1 27.0 296 289-590 109-427 (435)
39 3mmy_A MRNA export factor; mRN 100.0 3.3E-35 1.1E-39 303.3 36.4 301 284-589 24-342 (368)
40 2pm9_A Protein WEB1, protein t 100.0 1.2E-36 4.1E-41 320.7 25.3 308 263-590 42-411 (416)
41 2pbi_B Guanine nucleotide-bind 100.0 1.1E-34 3.6E-39 301.5 38.0 287 241-547 61-354 (354)
42 3iz6_a 40S ribosomal protein R 100.0 7.2E-36 2.5E-40 313.2 28.6 295 242-552 64-377 (380)
43 4ggc_A P55CDC, cell division c 100.0 4.1E-34 1.4E-38 289.8 39.3 291 285-590 7-312 (318)
44 4gga_A P55CDC, cell division c 100.0 3.5E-34 1.2E-38 304.3 39.9 290 286-590 88-392 (420)
45 4gqb_B Methylosome protein 50; 100.0 1.2E-34 4.1E-39 300.0 34.9 288 250-553 36-334 (344)
46 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-34 5.5E-39 331.7 39.4 291 290-590 4-299 (814)
47 1pgu_A Actin interacting prote 100.0 3.4E-34 1.2E-38 317.5 40.0 314 250-590 166-611 (615)
48 3vl1_A 26S proteasome regulato 100.0 4.7E-35 1.6E-39 309.4 31.5 317 250-590 62-416 (420)
49 4aez_A CDC20, WD repeat-contai 100.0 2.5E-34 8.6E-39 303.4 36.9 280 294-590 86-377 (401)
50 1r5m_A SIR4-interacting protei 100.0 4.9E-34 1.7E-38 300.5 38.3 281 296-590 42-358 (425)
51 3v7d_B Cell division control p 100.0 7.5E-34 2.5E-38 304.9 40.2 301 258-589 134-459 (464)
52 2xzm_R RACK1; ribosome, transl 100.0 5.6E-34 1.9E-38 294.3 36.7 284 255-552 38-342 (343)
53 2pm9_A Protein WEB1, protein t 100.0 2.7E-35 9.1E-40 310.4 27.1 284 299-590 12-334 (416)
54 1yfq_A Cell cycle arrest prote 100.0 1.1E-34 3.8E-39 297.4 29.6 282 293-585 5-315 (342)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4E-33 1.4E-37 298.0 42.4 299 258-590 131-439 (445)
56 1erj_A Transcriptional repress 100.0 1.7E-33 5.7E-38 296.6 38.6 285 243-551 63-390 (393)
57 2pm7_B Protein transport prote 100.0 8E-34 2.8E-38 287.2 34.3 255 292-549 2-284 (297)
58 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-33 5.3E-38 338.7 42.8 291 291-590 607-910 (1249)
59 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-33 3.9E-38 292.4 35.9 295 247-557 19-342 (345)
60 3v7d_B Cell division control p 100.0 7.2E-33 2.5E-37 297.2 42.2 281 291-590 113-418 (464)
61 4h5i_A Guanine nucleotide-exch 100.0 1.6E-34 5.6E-39 301.5 28.5 281 299-590 14-340 (365)
62 2hes_X YDR267CP; beta-propelle 100.0 1.5E-33 5.1E-38 289.7 35.1 285 246-550 16-328 (330)
63 1gxr_A ESG1, transducin-like e 100.0 1.2E-33 4.3E-38 288.1 33.1 278 298-590 8-293 (337)
64 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-33 9.6E-38 324.9 40.2 201 243-464 16-246 (902)
65 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-33 5.4E-38 338.6 39.3 319 252-590 623-1031(1249)
66 3vl1_A 26S proteasome regulato 100.0 4.5E-34 1.5E-38 301.9 30.3 279 300-590 57-362 (420)
67 1pgu_A Actin interacting prote 100.0 7.9E-33 2.7E-37 306.4 40.8 322 246-590 20-363 (615)
68 3bg1_A Protein SEC13 homolog; 100.0 2.1E-34 7.3E-39 294.2 25.8 252 293-590 7-290 (316)
69 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-34 4.3E-39 315.9 25.1 315 258-590 175-514 (524)
70 3dw8_B Serine/threonine-protei 100.0 4.6E-33 1.6E-37 296.4 35.1 279 297-589 26-442 (447)
71 4aow_A Guanine nucleotide-bind 100.0 2.7E-32 9.3E-37 279.1 38.9 296 241-552 35-339 (340)
72 1p22_A F-BOX/WD-repeat protein 100.0 8.5E-33 2.9E-37 294.9 36.1 273 293-590 127-411 (435)
73 4g56_B MGC81050 protein; prote 100.0 1.3E-33 4.6E-38 293.6 28.7 271 305-590 11-298 (357)
74 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.2E-32 1.5E-36 290.1 40.7 274 291-590 110-388 (445)
75 4ery_A WD repeat-containing pr 100.0 5E-32 1.7E-36 275.1 39.1 283 243-549 22-311 (312)
76 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-33 8.7E-38 325.3 33.0 333 249-590 103-658 (902)
77 3f3f_A Nucleoporin SEH1; struc 100.0 6.7E-33 2.3E-37 282.7 31.8 291 292-590 4-334 (351)
78 3dm0_A Maltose-binding peripla 100.0 1.9E-32 6.4E-37 309.9 38.1 293 243-549 381-692 (694)
79 3jrp_A Fusion protein of prote 100.0 1.7E-32 5.8E-37 284.4 33.1 260 290-551 2-288 (379)
80 2pm7_B Protein transport prote 100.0 1.9E-32 6.5E-37 277.1 31.4 251 336-590 2-282 (297)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 8.2E-33 2.8E-37 291.6 25.9 282 301-590 36-339 (402)
82 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-31 5.4E-36 306.8 36.6 322 243-590 12-383 (814)
83 1sq9_A Antiviral protein SKI8; 100.0 7.8E-32 2.7E-36 282.3 30.1 296 243-552 15-397 (397)
84 3zwl_B Eukaryotic translation 100.0 7.3E-31 2.5E-35 270.8 36.6 286 243-554 31-350 (369)
85 3k26_A Polycomb protein EED; W 100.0 5E-32 1.7E-36 279.5 26.8 246 298-550 68-366 (366)
86 1k8k_C P40, ARP2/3 complex 41 100.0 1E-30 3.5E-35 270.8 33.7 288 245-552 9-363 (372)
87 3i2n_A WD repeat-containing pr 100.0 1.6E-31 5.4E-36 275.0 26.8 295 243-553 17-356 (357)
88 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.9E-30 6.4E-35 278.1 34.6 281 299-589 4-387 (450)
89 4aez_A CDC20, WD repeat-contai 100.0 5E-30 1.7E-34 270.5 37.0 273 261-558 108-388 (401)
90 3jrp_A Fusion protein of prote 100.0 6.5E-31 2.2E-35 272.4 29.7 253 334-590 2-284 (379)
91 2j04_B YDR362CP, TAU91; beta p 100.0 9.1E-32 3.1E-36 293.3 22.8 273 288-590 123-425 (524)
92 4gga_A P55CDC, cell division c 100.0 9.8E-30 3.4E-34 270.0 35.8 276 264-566 123-411 (420)
93 3ei3_B DNA damage-binding prot 100.0 2.6E-30 9.1E-35 270.1 30.6 281 245-550 74-382 (383)
94 4a11_B DNA excision repair pro 100.0 2.4E-30 8.1E-35 271.0 29.8 331 243-590 42-402 (408)
95 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-29 3.8E-34 263.7 31.8 280 288-590 8-333 (355)
96 3odt_A Protein DOA1; ubiquitin 100.0 3.3E-29 1.1E-33 252.8 33.9 284 243-558 17-304 (313)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 7.3E-30 2.5E-34 269.0 29.0 280 257-553 48-345 (402)
98 3lrv_A PRE-mRNA-splicing facto 100.0 4.5E-30 1.5E-34 264.9 26.7 270 307-589 44-329 (343)
99 3jro_A Fusion protein of prote 100.0 4.1E-30 1.4E-34 293.4 28.7 257 292-550 2-285 (753)
100 3dwl_C Actin-related protein 2 100.0 5.7E-31 1.9E-35 274.2 19.6 243 339-589 7-277 (377)
101 2xyi_A Probable histone-bindin 100.0 2E-29 6.8E-34 268.6 31.6 247 337-590 122-407 (430)
102 4e54_B DNA damage-binding prot 100.0 4.4E-30 1.5E-34 274.0 25.1 286 248-554 123-434 (435)
103 3bws_A Protein LP49; two-domai 100.0 1.2E-28 3.9E-33 261.6 35.4 285 290-590 114-429 (433)
104 3gre_A Serine/threonine-protei 100.0 5.3E-31 1.8E-35 280.4 17.2 266 307-590 35-356 (437)
105 2xyi_A Probable histone-bindin 100.0 1.4E-29 4.8E-34 269.8 28.1 255 292-551 121-411 (430)
106 1l0q_A Surface layer protein; 100.0 2.4E-28 8.1E-33 255.6 36.9 265 312-590 2-272 (391)
107 3dw8_B Serine/threonine-protei 100.0 5.1E-30 1.7E-34 272.8 24.1 246 341-590 26-370 (447)
108 1p22_A F-BOX/WD-repeat protein 100.0 5.8E-29 2E-33 265.2 31.3 282 258-571 145-434 (435)
109 1yfq_A Cell cycle arrest prote 100.0 2E-29 7E-34 258.1 26.5 241 337-590 5-279 (342)
110 4ggc_A P55CDC, cell division c 100.0 4.9E-28 1.7E-32 245.0 35.7 262 264-552 43-317 (318)
111 1l0q_A Surface layer protein; 100.0 1E-27 3.4E-32 250.9 38.8 276 260-563 6-288 (391)
112 3f3f_A Nucleoporin SEH1; struc 100.0 9.4E-29 3.2E-33 251.9 29.1 300 242-557 9-344 (351)
113 4h5i_A Guanine nucleotide-exch 100.0 6.2E-28 2.1E-32 251.6 33.8 287 250-550 20-343 (365)
114 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-29 8.4E-34 269.4 22.4 265 296-590 12-294 (588)
115 2w18_A PALB2, fancn, partner a 100.0 2.1E-27 7.1E-32 240.0 33.0 288 290-590 26-354 (356)
116 3jro_A Fusion protein of prote 100.0 7.2E-29 2.5E-33 283.1 23.9 251 336-590 2-282 (753)
117 3vu4_A KMHSV2; beta-propeller 100.0 6.7E-28 2.3E-32 250.3 27.2 247 326-590 3-268 (355)
118 3mmy_A MRNA export factor; mRN 100.0 1.1E-27 3.6E-32 246.9 28.2 281 243-548 38-344 (368)
119 3bg1_A Protein SEC13 homolog; 100.0 2.1E-28 7.1E-33 249.8 20.8 248 242-502 11-292 (316)
120 4gq1_A NUP37; propeller, trans 100.0 7.6E-28 2.6E-32 253.4 22.4 256 296-586 86-383 (393)
121 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-27 5.4E-32 255.5 23.1 289 246-582 17-350 (588)
122 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-27 4.8E-32 246.2 20.9 227 351-590 44-289 (343)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-26 1.2E-30 245.0 31.4 250 295-549 98-390 (450)
124 3bws_A Protein LP49; two-domai 99.9 5.6E-25 1.9E-29 233.2 34.8 273 251-550 129-432 (433)
125 1nir_A Nitrite reductase; hemo 99.9 4.6E-24 1.6E-28 233.9 35.7 315 253-590 146-511 (543)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-24 5E-29 230.1 28.5 264 293-571 111-407 (415)
127 2w18_A PALB2, fancn, partner a 99.9 1.2E-23 4.1E-28 212.5 28.8 179 320-501 155-355 (356)
128 4gq1_A NUP37; propeller, trans 99.9 3.9E-25 1.3E-29 232.6 18.2 238 251-502 96-388 (393)
129 1nir_A Nitrite reductase; hemo 99.9 1.5E-23 5.1E-28 229.8 30.7 274 307-590 145-455 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-23 3.8E-28 223.3 27.4 276 299-590 62-384 (415)
131 1ri6_A Putative isomerase YBHE 99.9 2.9E-22 1E-26 204.4 32.2 272 313-590 6-305 (343)
132 3u4y_A Uncharacterized protein 99.9 1.9E-22 6.4E-27 205.7 30.2 274 306-590 4-301 (331)
133 3vgz_A Uncharacterized protein 99.9 2E-21 7E-26 199.3 37.8 272 298-583 39-334 (353)
134 2ecf_A Dipeptidyl peptidase IV 99.9 8.5E-23 2.9E-27 232.1 27.2 282 299-590 36-410 (741)
135 1pby_B Quinohemoprotein amine 99.9 9.3E-22 3.2E-26 200.2 29.1 261 313-590 2-307 (337)
136 2ojh_A Uncharacterized protein 99.9 9.5E-22 3.3E-26 195.4 23.9 252 317-583 17-292 (297)
137 3u4y_A Uncharacterized protein 99.9 2.6E-20 8.9E-25 189.8 34.2 274 289-571 30-324 (331)
138 1ri6_A Putative isomerase YBHE 99.9 4.8E-20 1.6E-24 187.9 35.1 293 260-572 9-333 (343)
139 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-21 3.9E-26 222.1 22.0 277 301-590 18-390 (723)
140 2ecf_A Dipeptidyl peptidase IV 99.9 6.8E-21 2.3E-25 216.4 28.1 265 301-580 110-442 (741)
141 3o4h_A Acylamino-acid-releasin 99.9 4.5E-21 1.5E-25 212.0 25.8 267 299-590 21-312 (582)
142 1pby_B Quinohemoprotein amine 99.9 2.2E-20 7.4E-25 190.0 28.0 257 290-562 22-322 (337)
143 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-20 4.5E-25 212.9 28.8 275 299-590 81-432 (706)
144 1k32_A Tricorn protease; prote 99.9 2.5E-20 8.7E-25 220.1 31.8 279 292-590 196-499 (1045)
145 2z3z_A Dipeptidyl aminopeptida 99.9 8.8E-21 3E-25 214.3 25.5 271 302-584 28-378 (706)
146 3vgz_A Uncharacterized protein 99.9 1.5E-19 5.2E-24 185.3 30.9 243 342-590 39-300 (353)
147 3hfq_A Uncharacterized protein 99.9 5.1E-19 1.8E-23 181.8 34.1 263 321-589 15-313 (347)
148 1jmx_B Amine dehydrogenase; ox 99.9 2E-19 6.9E-24 183.9 29.4 260 304-590 4-322 (349)
149 1xfd_A DIP, dipeptidyl aminope 99.9 5.6E-20 1.9E-24 208.2 27.1 284 290-583 48-431 (723)
150 2ojh_A Uncharacterized protein 99.8 1.1E-19 3.6E-24 180.6 24.4 238 293-540 35-292 (297)
151 1k32_A Tricorn protease; prote 99.8 1.6E-19 5.5E-24 213.2 29.9 275 298-590 294-634 (1045)
152 3scy_A Hypothetical bacterial 99.8 2.6E-18 8.9E-23 177.6 34.3 270 312-589 13-333 (361)
153 3pe7_A Oligogalacturonate lyas 99.8 1.7E-19 5.7E-24 188.0 24.7 293 290-589 21-378 (388)
154 3hfq_A Uncharacterized protein 99.8 1.9E-18 6.6E-23 177.5 30.2 253 296-555 36-324 (347)
155 3scy_A Hypothetical bacterial 99.8 8.1E-18 2.8E-22 173.9 32.5 264 298-570 48-360 (361)
156 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.3E-18 1.5E-22 176.8 28.1 274 314-590 4-338 (365)
157 1z68_A Fibroblast activation p 99.8 1.3E-18 4.4E-23 197.1 23.5 276 304-590 20-388 (719)
158 1jmx_B Amine dehydrogenase; ox 99.8 4.3E-17 1.5E-21 166.5 29.2 269 253-560 8-335 (349)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 4.7E-18 1.6E-22 181.0 22.7 201 299-504 36-279 (434)
160 3o4h_A Acylamino-acid-releasin 99.8 2.3E-17 7.9E-22 182.2 23.9 231 343-590 21-273 (582)
161 3c5m_A Oligogalacturonate lyas 99.8 2.7E-17 9.4E-22 171.2 21.7 284 291-589 22-378 (396)
162 2oiz_A Aromatic amine dehydrog 99.8 4.1E-16 1.4E-20 161.9 30.4 268 290-573 42-359 (361)
163 1z68_A Fibroblast activation p 99.8 8.9E-18 3E-22 190.2 18.8 285 290-590 47-440 (719)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.9E-16 1E-20 162.9 27.6 247 298-551 38-342 (365)
165 2oit_A Nucleoporin 214KDA; NH2 99.7 3.4E-16 1.2E-20 166.6 27.1 200 297-501 90-331 (434)
166 1q7f_A NHL, brain tumor CG1071 99.7 2.4E-15 8.4E-20 149.9 31.2 238 341-590 27-277 (286)
167 4a5s_A Dipeptidyl peptidase 4 99.7 2.9E-16 9.9E-21 178.6 26.0 270 301-582 18-383 (740)
168 3azo_A Aminopeptidase; POP fam 99.7 5.2E-16 1.8E-20 173.9 27.5 286 293-589 17-363 (662)
169 1q7f_A NHL, brain tumor CG1071 99.7 3.5E-15 1.2E-19 148.7 30.4 241 297-551 27-281 (286)
170 2oiz_A Aromatic amine dehydrog 99.7 8.5E-16 2.9E-20 159.4 26.0 265 312-590 15-331 (361)
171 3fvz_A Peptidyl-glycine alpha- 99.7 3E-15 1E-19 153.1 27.9 240 343-590 23-319 (329)
172 3fvz_A Peptidyl-glycine alpha- 99.7 7.2E-15 2.5E-19 150.2 29.5 243 299-549 23-321 (329)
173 2dg1_A DRP35, lactonase; beta 99.7 2.3E-15 7.8E-20 153.5 25.7 269 300-583 6-300 (333)
174 3dsm_A Uncharacterized protein 99.7 3.5E-14 1.2E-18 145.1 31.5 253 301-569 45-319 (328)
175 2gop_A Trilobed protease; beta 99.7 2.7E-14 9.2E-19 146.2 29.9 255 300-589 15-327 (347)
176 2z2n_A Virginiamycin B lyase; 99.7 6.2E-13 2.1E-17 132.4 37.9 274 295-587 10-290 (299)
177 3pe7_A Oligogalacturonate lyas 99.7 1.1E-14 3.7E-19 151.4 23.9 251 331-590 18-326 (388)
178 1qks_A Cytochrome CD1 nitrite 99.6 9.7E-13 3.3E-17 144.1 38.5 296 288-590 186-535 (567)
179 3azo_A Aminopeptidase; POP fam 99.6 1.3E-14 4.5E-19 162.4 24.3 257 292-560 60-379 (662)
180 3dsm_A Uncharacterized protein 99.6 9.6E-14 3.3E-18 141.9 28.6 255 321-590 16-299 (328)
181 1qks_A Cytochrome CD1 nitrite 99.6 6.2E-13 2.1E-17 145.6 36.3 272 312-590 167-474 (567)
182 3e5z_A Putative gluconolactona 99.6 2E-13 6.7E-18 136.9 29.4 241 333-588 17-282 (296)
183 4a5s_A Dipeptidyl peptidase 4 99.6 9E-14 3.1E-18 158.0 29.2 279 290-582 47-436 (740)
184 3e5z_A Putative gluconolactona 99.6 3.5E-13 1.2E-17 135.1 29.6 245 290-554 18-290 (296)
185 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.6E-18 154.5 29.4 243 342-590 123-411 (710)
186 2dg1_A DRP35, lactonase; beta 99.6 4.3E-12 1.5E-16 129.1 35.3 243 290-541 35-301 (333)
187 3no2_A Uncharacterized protein 99.6 9.9E-13 3.4E-17 131.0 29.2 244 312-567 5-271 (276)
188 3c5m_A Oligogalacturonate lyas 99.6 3.7E-14 1.3E-18 147.4 19.1 250 327-590 15-326 (396)
189 1rwi_B Serine/threonine-protei 99.6 5.4E-13 1.8E-17 131.3 24.3 240 301-553 25-267 (270)
190 2qc5_A Streptogramin B lactona 99.6 2.7E-11 9.1E-16 120.5 36.5 275 297-589 17-296 (300)
191 2xdw_A Prolyl endopeptidase; a 99.5 2.1E-12 7.1E-17 146.1 30.9 244 297-552 122-416 (710)
192 2gop_A Trilobed protease; beta 99.5 1.4E-12 4.9E-17 133.2 26.6 232 300-562 59-341 (347)
193 1rwi_B Serine/threonine-protei 99.5 1.6E-12 5.4E-17 127.9 25.9 235 345-590 25-261 (270)
194 2mad_H Methylamine dehydrogena 99.5 3E-11 1E-15 125.6 36.5 268 309-590 30-347 (373)
195 2bkl_A Prolyl endopeptidase; m 99.5 1.7E-13 5.8E-18 154.6 19.7 241 341-590 118-394 (695)
196 2mad_H Methylamine dehydrogena 99.5 5E-11 1.7E-15 123.9 36.1 251 290-557 58-357 (373)
197 3sjl_D Methylamine dehydrogena 99.5 3.8E-12 1.3E-16 131.5 27.0 271 308-590 41-360 (386)
198 3sjl_D Methylamine dehydrogena 99.5 7.2E-12 2.5E-16 129.4 28.3 266 289-571 69-383 (386)
199 3no2_A Uncharacterized protein 99.5 7.5E-12 2.6E-16 124.6 27.6 212 354-580 4-230 (276)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 6.4E-12 2.2E-16 126.3 27.2 242 340-590 14-296 (314)
201 2bkl_A Prolyl endopeptidase; m 99.5 6.2E-13 2.1E-17 150.0 19.9 243 297-553 118-400 (695)
202 2z2n_A Virginiamycin B lyase; 99.5 8.5E-11 2.9E-15 116.8 32.2 237 341-590 12-252 (299)
203 3g4e_A Regucalcin; six bladed 99.5 1.1E-10 3.9E-15 117.0 32.4 234 341-583 10-263 (297)
204 3hrp_A Uncharacterized protein 99.4 9.2E-11 3.1E-15 123.5 31.7 240 300-548 131-408 (409)
205 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-11 4.2E-16 140.4 26.5 238 342-590 161-438 (741)
206 3c75_H MADH, methylamine dehyd 99.4 2.9E-11 9.8E-16 127.1 26.0 257 322-590 99-399 (426)
207 3c75_H MADH, methylamine dehyd 99.4 3.5E-11 1.2E-15 126.4 26.7 255 288-557 108-409 (426)
208 2qe8_A Uncharacterized protein 99.4 1.4E-11 4.9E-16 126.4 22.9 270 290-585 10-313 (343)
209 3hrp_A Uncharacterized protein 99.4 2.6E-10 8.8E-15 120.1 32.4 240 344-589 131-406 (409)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2.4E-10 8.1E-15 114.8 30.8 240 296-550 14-299 (314)
211 1yr2_A Prolyl oligopeptidase; 99.4 8.8E-11 3E-15 133.4 26.9 243 297-552 160-443 (741)
212 2qc5_A Streptogramin B lactona 99.4 1.6E-09 5.4E-14 107.6 32.9 236 342-590 18-257 (300)
213 3dr2_A Exported gluconolactona 99.3 4.5E-10 1.5E-14 113.0 27.1 239 335-588 36-302 (305)
214 2ghs_A AGR_C_1268P; regucalcin 99.3 2.1E-09 7.3E-14 109.3 31.4 226 345-583 50-293 (326)
215 1xip_A Nucleoporin NUP159; bet 99.3 5.2E-11 1.8E-15 123.4 18.1 174 301-491 39-232 (388)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.8E-09 1.3E-13 109.3 31.8 255 312-590 103-375 (376)
217 1mda_H Methylamine dehydrogena 99.3 1.5E-10 5E-15 119.6 19.8 260 288-571 55-366 (368)
218 3g4e_A Regucalcin; six bladed 99.3 4.1E-09 1.4E-13 105.6 29.2 230 295-539 8-261 (297)
219 1kb0_A Quinohemoprotein alcoho 99.3 3.8E-10 1.3E-14 126.5 23.7 270 312-590 77-504 (677)
220 3dr2_A Exported gluconolactona 99.2 2.2E-09 7.6E-14 107.9 26.4 238 290-547 35-303 (305)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3.7E-09 1.3E-13 109.4 28.5 257 312-590 53-334 (376)
222 1yiq_A Quinohemoprotein alcoho 99.2 6.9E-10 2.4E-14 124.6 24.1 273 312-590 70-502 (689)
223 1xip_A Nucleoporin NUP159; bet 99.2 1.4E-10 4.7E-15 120.3 16.3 174 345-537 39-231 (388)
224 1yiq_A Quinohemoprotein alcoho 99.2 3E-09 1E-13 119.5 27.7 259 312-581 121-537 (689)
225 1mda_H Methylamine dehydrogena 99.2 9.7E-10 3.3E-14 113.5 21.7 248 323-590 47-343 (368)
226 3iuj_A Prolyl endopeptidase; h 99.2 1.9E-09 6.5E-14 121.4 24.0 241 297-553 126-408 (693)
227 2ghs_A AGR_C_1268P; regucalcin 99.2 5E-08 1.7E-12 99.1 32.5 222 300-539 49-291 (326)
228 1kb0_A Quinohemoprotein alcoho 99.2 9.8E-09 3.3E-13 115.0 29.1 257 312-579 128-537 (677)
229 3iuj_A Prolyl endopeptidase; h 99.2 1.7E-09 5.8E-14 121.8 22.1 238 341-590 126-402 (693)
230 2ece_A 462AA long hypothetical 99.1 4.7E-08 1.6E-12 101.8 27.0 226 309-538 93-399 (462)
231 2hz6_A Endoplasmic reticulum t 99.1 6.6E-11 2.3E-15 122.9 5.5 200 354-571 8-213 (369)
232 2ece_A 462AA long hypothetical 99.1 1.3E-07 4.4E-12 98.5 29.3 223 353-581 93-399 (462)
233 3hxj_A Pyrrolo-quinoline quino 99.0 1.2E-08 4.2E-13 102.8 20.3 293 263-589 26-320 (330)
234 2hz6_A Endoplasmic reticulum t 99.0 7.9E-11 2.7E-15 122.3 3.9 223 312-552 9-238 (369)
235 1npe_A Nidogen, entactin; glyc 99.0 1.2E-06 4.2E-11 85.8 32.2 248 314-572 3-261 (267)
236 1kv9_A Type II quinohemoprotei 99.0 2.7E-08 9.4E-13 111.2 21.9 273 312-590 66-485 (668)
237 2iwa_A Glutamine cyclotransfer 99.0 1.9E-07 6.4E-12 91.4 24.7 212 334-551 10-238 (266)
238 1fwx_A Nitrous oxide reductase 98.9 9.3E-08 3.2E-12 102.9 23.2 223 354-581 100-406 (595)
239 3hxj_A Pyrrolo-quinoline quino 98.9 1.2E-08 4.2E-13 102.9 15.1 250 313-590 31-281 (330)
240 2qe8_A Uncharacterized protein 98.9 5.4E-08 1.9E-12 99.5 18.7 222 344-590 17-275 (343)
241 2iwa_A Glutamine cyclotransfer 98.9 4E-07 1.4E-11 89.1 23.2 206 375-588 9-232 (266)
242 1w6s_A Methanol dehydrogenase 98.9 6.9E-07 2.4E-11 98.1 27.0 273 312-590 62-500 (599)
243 3nol_A Glutamine cyclotransfer 98.8 6.7E-07 2.3E-11 86.6 23.6 197 376-580 32-243 (262)
244 3nok_A Glutaminyl cyclase; bet 98.8 5.7E-07 2E-11 87.1 22.8 196 376-581 44-254 (268)
245 2ad6_A Methanol dehydrogenase 98.8 7.5E-07 2.6E-11 97.6 26.4 274 312-590 62-491 (571)
246 3nol_A Glutamine cyclotransfer 98.8 5.4E-07 1.9E-11 87.2 22.0 198 334-539 32-244 (262)
247 4a2l_A BT_4663, two-component 98.8 5.5E-06 1.9E-10 94.6 33.5 310 264-590 95-433 (795)
248 1fwx_A Nitrous oxide reductase 98.8 1.6E-07 5.4E-12 101.1 18.3 236 310-553 100-434 (595)
249 4a2l_A BT_4663, two-component 98.8 2.4E-05 8.1E-10 89.3 37.4 278 298-589 213-522 (795)
250 1kv9_A Type II quinohemoprotei 98.8 2.5E-06 8.4E-11 95.4 28.6 239 312-561 117-499 (668)
251 2ad6_A Methanol dehydrogenase 98.8 1.9E-06 6.6E-11 94.3 27.2 238 312-561 115-505 (571)
252 1flg_A Protein (quinoprotein e 98.8 4.3E-06 1.5E-10 91.8 29.4 274 312-590 68-513 (582)
253 3mbr_X Glutamine cyclotransfer 98.8 3.4E-06 1.2E-10 80.9 25.0 197 376-580 10-222 (243)
254 3mbr_X Glutamine cyclotransfer 98.7 2.7E-06 9.3E-11 81.6 23.1 197 334-538 10-222 (243)
255 2p4o_A Hypothetical protein; p 98.7 2.4E-05 8.3E-10 78.2 29.7 236 334-580 23-276 (306)
256 2fp8_A Strictosidine synthase; 98.7 7E-06 2.4E-10 82.8 25.7 234 344-589 19-309 (322)
257 1w6s_A Methanol dehydrogenase 98.7 1.2E-05 4.2E-10 88.2 29.0 255 314-580 123-534 (599)
258 1npe_A Nidogen, entactin; glyc 98.6 2.5E-05 8.4E-10 76.3 28.3 222 300-532 36-263 (267)
259 2p4o_A Hypothetical protein; p 98.6 2E-05 7E-10 78.8 28.0 239 287-541 20-279 (306)
260 2fp8_A Strictosidine synthase; 98.6 2E-05 6.9E-10 79.3 28.1 243 294-549 13-312 (322)
261 3nok_A Glutaminyl cyclase; bet 98.6 6.9E-06 2.4E-10 79.5 22.9 190 290-491 44-253 (268)
262 1flg_A Protein (quinoprotein e 98.6 3.2E-05 1.1E-09 84.8 31.4 259 312-580 117-547 (582)
263 3v9f_A Two-component system se 98.6 0.0001 3.5E-09 83.8 34.1 278 299-590 257-565 (781)
264 3v64_C Agrin; beta propeller, 98.5 0.00019 6.4E-09 73.4 30.9 247 299-559 33-284 (349)
265 3v65_B Low-density lipoprotein 98.5 0.00017 5.7E-09 74.8 30.5 254 301-568 78-336 (386)
266 3tc9_A Hypothetical hydrolase; 98.4 5.9E-05 2E-09 79.5 26.4 240 345-589 138-426 (430)
267 1ijq_A LDL receptor, low-densi 98.4 0.0014 4.9E-08 65.7 34.8 228 322-558 10-246 (316)
268 1k3i_A Galactose oxidase precu 98.4 6.2E-06 2.1E-10 92.0 18.6 271 304-582 190-530 (656)
269 3tc9_A Hypothetical hydrolase; 98.4 0.00013 4.4E-09 76.8 27.6 241 301-548 138-428 (430)
270 3v9f_A Two-component system se 98.4 0.00051 1.8E-08 78.0 34.4 273 300-589 211-520 (781)
271 3p5b_L Low density lipoprotein 98.4 0.0013 4.5E-08 68.4 34.2 245 313-567 84-337 (400)
272 2xbg_A YCF48-like protein; pho 98.3 0.0036 1.2E-07 63.0 35.5 272 299-590 35-319 (327)
273 4hw6_A Hypothetical protein, I 98.3 0.0002 6.9E-09 75.4 26.9 239 345-589 140-429 (433)
274 4hw6_A Hypothetical protein, I 98.3 0.00034 1.2E-08 73.6 28.3 242 301-548 140-431 (433)
275 3v64_C Agrin; beta propeller, 98.3 0.001 3.6E-08 67.7 30.0 230 347-588 37-270 (349)
276 1ijq_A LDL receptor, low-densi 98.3 0.0014 4.7E-08 65.8 30.3 221 358-589 4-234 (316)
277 2xzh_A Clathrin heavy chain 1; 98.2 0.0031 1.1E-07 62.4 30.9 252 322-586 49-325 (365)
278 3sov_A LRP-6, low-density lipo 98.2 0.00043 1.5E-08 69.7 25.2 229 321-558 12-246 (318)
279 3kya_A Putative phosphatase; s 98.2 0.00058 2E-08 72.5 26.2 249 301-554 140-479 (496)
280 3qqz_A Putative uncharacterize 98.2 0.00085 2.9E-08 65.0 24.9 205 338-548 21-251 (255)
281 3v65_B Low-density lipoprotein 98.1 0.00092 3.1E-08 69.2 26.9 230 348-589 81-314 (386)
282 1k3i_A Galactose oxidase precu 98.1 9.9E-05 3.4E-09 82.2 20.1 237 298-539 241-530 (656)
283 3m0c_C LDL receptor, low-densi 98.1 0.0043 1.5E-07 70.1 33.5 229 321-558 403-640 (791)
284 1bpo_A Protein (clathrin); cla 98.1 0.014 4.9E-07 60.0 34.5 253 321-586 47-324 (494)
285 2xe4_A Oligopeptidase B; hydro 98.1 0.00046 1.6E-08 78.0 24.8 197 297-501 170-398 (751)
286 3qqz_A Putative uncharacterize 98.1 0.0059 2E-07 59.0 29.0 203 293-501 20-251 (255)
287 3p5b_L Low density lipoprotein 98.1 0.0026 8.9E-08 66.1 28.3 222 357-589 85-316 (400)
288 3ei3_A DNA damage-binding prot 97.9 0.01 3.5E-07 69.9 32.3 216 366-588 808-1057(1158)
289 2p9w_A MAL S 1 allergenic prot 97.9 0.0069 2.4E-07 60.4 26.1 206 296-503 9-265 (334)
290 3ei3_A DNA damage-binding prot 97.9 0.034 1.2E-06 65.5 36.2 231 291-536 504-753 (1158)
291 3amr_A 3-phytase; beta-propell 97.9 0.0038 1.3E-07 62.9 24.0 200 354-558 39-272 (355)
292 3kya_A Putative phosphatase; s 97.9 0.0041 1.4E-07 66.0 25.5 240 345-589 140-471 (496)
293 4a0p_A LRP6, LRP-6, low-densit 97.9 0.026 9E-07 62.1 32.9 227 320-558 13-245 (628)
294 3sov_A LRP-6, low-density lipo 97.8 0.0028 9.6E-08 63.6 23.1 216 364-589 12-234 (318)
295 2xe4_A Oligopeptidase B; hydro 97.8 0.00093 3.2E-08 75.5 21.2 193 390-589 179-394 (751)
296 3amr_A 3-phytase; beta-propell 97.8 0.0022 7.5E-08 64.6 21.2 196 389-590 30-260 (355)
297 2p9w_A MAL S 1 allergenic prot 97.8 0.01 3.5E-07 59.2 25.4 208 342-551 11-266 (334)
298 3s94_A LRP-6, low-density lipo 97.8 0.042 1.4E-06 60.3 32.5 280 300-588 84-418 (619)
299 3s94_A LRP-6, low-density lipo 97.7 0.019 6.4E-07 63.2 28.9 228 321-557 17-250 (619)
300 3m0c_C LDL receptor, low-densi 97.7 0.016 5.4E-07 65.5 27.9 215 363-587 402-626 (791)
301 1n7d_A LDL receptor, low-densi 97.7 0.00016 5.6E-09 80.9 11.4 239 321-568 385-632 (699)
302 2vpj_A Kelch-like protein 12; 97.6 0.01 3.5E-07 58.5 21.9 188 354-552 62-280 (301)
303 2ism_A Putative oxidoreductase 97.6 0.059 2E-06 54.7 28.0 233 343-584 30-337 (352)
304 3ii7_A Kelch-like protein 7; p 97.5 0.018 6.2E-07 56.8 23.5 233 312-558 12-282 (306)
305 2xbg_A YCF48-like protein; pho 97.5 0.034 1.2E-06 55.7 25.2 230 299-547 79-319 (327)
306 2xn4_A Kelch-like protein 2; s 97.5 0.02 6.8E-07 56.4 23.0 188 354-552 61-278 (302)
307 3sre_A PON1, serum paraoxonase 97.4 0.043 1.5E-06 55.7 23.7 208 344-558 50-308 (355)
308 2vpj_A Kelch-like protein 12; 97.3 0.014 4.7E-07 57.5 19.8 217 354-584 14-264 (301)
309 4asc_A Kelch repeat and BTB do 97.3 0.031 1.1E-06 55.4 22.3 226 314-553 7-280 (315)
310 2ism_A Putative oxidoreductase 97.3 0.1 3.5E-06 52.8 25.7 227 299-538 30-333 (352)
311 1n7d_A LDL receptor, low-densi 97.2 0.0021 7.3E-08 71.9 13.2 206 300-508 406-619 (699)
312 3a9g_A Putative uncharacterize 97.2 0.18 6E-06 51.1 26.3 233 343-581 28-330 (354)
313 3a9g_A Putative uncharacterize 97.2 0.26 8.9E-06 49.9 27.7 228 299-538 28-330 (354)
314 1zgk_A Kelch-like ECH-associat 97.2 0.035 1.2E-06 54.9 20.5 227 312-552 25-289 (308)
315 4a0p_A LRP6, LRP-6, low-densit 97.2 0.43 1.5E-05 52.3 37.3 156 300-461 80-238 (628)
316 3ott_A Two-component system se 97.2 0.13 4.5E-06 57.8 27.5 230 343-589 21-256 (758)
317 2xn4_A Kelch-like protein 2; s 97.1 0.036 1.2E-06 54.5 20.2 215 356-584 17-262 (302)
318 2woz_A Kelch repeat and BTB do 97.1 0.11 3.6E-06 51.6 23.4 227 314-554 18-291 (318)
319 3ii7_A Kelch-like protein 7; p 97.1 0.045 1.6E-06 53.9 20.4 214 357-584 14-258 (306)
320 2be1_A Serine/threonine-protei 97.1 0.0062 2.1E-07 61.4 13.7 197 356-555 11-236 (339)
321 3ott_A Two-component system se 97.1 0.61 2.1E-05 52.2 34.9 300 263-587 28-347 (758)
322 1xi4_A Clathrin heavy chain; a 97.0 0.05 1.7E-06 63.9 21.7 238 322-571 48-310 (1630)
323 1zgk_A Kelch-like ECH-associat 96.8 0.062 2.1E-06 53.1 18.4 217 354-584 24-273 (308)
324 2g8s_A Glucose/sorbosone dehyd 96.7 0.34 1.2E-05 48.9 23.8 233 300-544 18-348 (353)
325 4asc_A Kelch repeat and BTB do 96.6 0.11 3.8E-06 51.3 18.7 211 358-583 8-253 (315)
326 2xzh_A Clathrin heavy chain 1; 96.6 0.68 2.3E-05 45.9 29.0 195 307-508 74-295 (365)
327 2uvk_A YJHT; unknown function, 96.4 0.19 6.6E-06 50.5 19.0 220 354-584 19-327 (357)
328 1bpo_A Protein (clathrin); cla 96.3 1.2 4.1E-05 45.9 29.7 196 306-508 72-294 (494)
329 2be1_A Serine/threonine-protei 96.2 0.079 2.7E-06 53.2 14.9 193 312-507 10-235 (339)
330 3sre_A PON1, serum paraoxonase 96.2 0.089 3E-06 53.3 15.4 156 431-590 51-249 (355)
331 3pbp_A Nucleoporin NUP82; beta 96.2 0.22 7.5E-06 51.2 17.9 138 408-546 40-208 (452)
332 2g8s_A Glucose/sorbosone dehyd 96.2 1.3 4.3E-05 44.7 28.2 240 344-586 18-347 (353)
333 3sbq_A Nitrous-oxide reductase 96.1 1.9 6.4E-05 45.9 26.9 245 314-563 72-431 (638)
334 3pbp_A Nucleoporin NUP82; beta 96.0 0.47 1.6E-05 48.8 19.3 145 439-587 30-206 (452)
335 2uvk_A YJHT; unknown function, 95.9 0.28 9.6E-06 49.3 17.8 234 312-557 20-349 (357)
336 3s25_A Hypothetical 7-bladed b 95.9 1.5 5.2E-05 43.1 24.7 208 312-551 25-256 (302)
337 1cru_A Protein (soluble quinop 95.8 0.8 2.7E-05 48.0 21.0 109 429-538 26-162 (454)
338 2woz_A Kelch repeat and BTB do 95.5 0.59 2E-05 46.0 17.8 144 354-503 109-287 (318)
339 1tl2_A L10, protein (tachylect 95.4 1.4 4.9E-05 41.1 18.4 177 400-586 5-203 (236)
340 2zwa_A Leucine carboxyl methyl 95.3 0.9 3.1E-05 50.4 20.2 198 353-554 396-639 (695)
341 3das_A Putative oxidoreductase 95.0 1.3 4.3E-05 44.6 18.3 152 424-578 26-217 (347)
342 1tl2_A L10, protein (tachylect 94.6 2.1 7.3E-05 39.9 17.2 142 344-496 41-203 (236)
343 3das_A Putative oxidoreductase 94.2 5.1 0.00018 40.1 27.6 239 338-581 26-326 (347)
344 1xi4_A Clathrin heavy chain; a 94.2 1.8 6.1E-05 51.2 19.0 195 307-508 73-294 (1630)
345 1cru_A Protein (soluble quinop 94.2 6.3 0.00022 41.1 29.2 107 343-449 26-163 (454)
346 2zwa_A Leucine carboxyl methyl 94.1 1.8 6.2E-05 47.9 18.7 150 400-552 399-579 (695)
347 3b7f_A Glycosyl hydrolase, BNR 93.2 8 0.00027 39.1 25.8 263 299-570 54-391 (394)
348 3qhy_B Beta-lactamase inhibito 91.2 3.5 0.00012 39.9 14.2 218 344-589 24-242 (282)
349 3b7f_A Glycosyl hydrolase, BNR 91.0 14 0.00048 37.2 27.8 270 312-588 22-367 (394)
350 3qhy_B Beta-lactamase inhibito 89.6 13 0.00045 35.8 16.8 238 301-571 25-263 (282)
351 3sbq_A Nitrous-oxide reductase 85.4 0.91 3.1E-05 48.2 5.6 94 410-503 299-408 (638)
352 3s25_A Hypothetical 7-bladed b 82.9 36 0.0012 33.0 22.9 139 349-503 109-255 (302)
353 3uc1_A DNA gyrase subunit A; D 82.7 39 0.0013 33.3 23.7 272 312-584 3-321 (327)
354 3q6k_A 43.2 kDa salivary prote 82.6 43 0.0015 33.7 24.0 188 365-580 123-341 (381)
355 2wg3_C Hedgehog-interacting pr 81.5 7.9 0.00027 40.4 11.0 110 430-539 14-158 (463)
356 1zi0_A DNA gyrase subunit A; b 81.4 41 0.0014 32.7 26.8 236 312-550 3-277 (307)
357 4hvt_A Ritya.17583.B, post-pro 77.1 92 0.0031 34.2 22.2 229 347-582 132-416 (711)
358 4hvt_A Ritya.17583.B, post-pro 77.0 92 0.0032 34.2 24.0 240 302-549 131-429 (711)
359 1sqj_A OXG-RCBH, oligoxylogluc 76.9 98 0.0033 34.4 24.9 147 299-450 14-190 (789)
360 3l6v_A GYRA, DNA gyrase subuni 76.0 68 0.0023 32.1 24.4 149 352-503 4-180 (370)
361 3no0_A DNA gyrase subunit A; D 75.7 57 0.0019 31.1 20.9 197 300-503 24-246 (276)
362 3kci_A Probable E3 ubiquitin-p 74.6 73 0.0025 31.9 26.7 231 312-550 62-345 (389)
363 1suu_A DNA gyrase subunit A; t 73.8 69 0.0023 31.2 23.9 194 353-550 6-231 (312)
364 3no0_A DNA gyrase subunit A; D 71.0 74 0.0025 30.3 20.7 151 399-550 80-246 (276)
365 1suu_A DNA gyrase subunit A; t 69.5 85 0.0029 30.5 27.4 190 312-503 8-231 (312)
366 2wg3_C Hedgehog-interacting pr 67.1 1.2E+02 0.0041 31.3 28.2 54 300-354 14-79 (463)
367 4fhn_B Nucleoporin NUP120; pro 65.6 2E+02 0.0069 33.4 18.8 37 522-558 240-276 (1139)
368 3kci_A Probable E3 ubiquitin-p 62.3 1.3E+02 0.0044 30.0 29.0 261 313-589 11-341 (389)
369 1zi0_A DNA gyrase subunit A; b 61.6 1.2E+02 0.0041 29.3 24.8 228 354-586 2-270 (307)
370 1wp5_A Topoisomerase IV; broke 59.5 1.3E+02 0.0046 29.2 25.5 190 312-503 5-225 (323)
371 4gq2_M Nucleoporin NUP120; bet 59.0 2.4E+02 0.0083 32.0 24.2 38 521-558 237-274 (950)
372 3l6v_A GYRA, DNA gyrase subuni 56.6 1.6E+02 0.0056 29.3 29.1 193 308-503 4-265 (370)
373 4gq2_M Nucleoporin NUP120; bet 53.9 2.9E+02 0.0099 31.4 23.3 36 474-509 237-272 (950)
374 4fhn_B Nucleoporin NUP120; pro 50.3 56 0.0019 38.2 10.4 39 345-383 239-277 (1139)
375 3zwu_A Alkaline phosphatase PH 48.2 50 0.0017 35.4 8.8 60 432-491 478-549 (592)
376 3zwu_A Alkaline phosphatase PH 45.7 63 0.0021 34.7 9.1 56 523-579 479-547 (592)
377 3uc1_A DNA gyrase subunit A; D 44.9 2.3E+02 0.0078 27.6 21.5 188 312-503 53-279 (327)
378 2cn3_A Xyloglucanase, beta-1,4 44.3 3.5E+02 0.012 29.5 29.3 60 301-362 24-91 (737)
379 1wp5_A Topoisomerase IV; broke 41.0 2.6E+02 0.0089 27.1 23.4 194 353-549 3-224 (323)
380 4a9v_A PHOX; hydrolase, beta-p 40.3 1.1E+02 0.0039 32.5 9.8 63 430-492 476-550 (592)
381 1sqj_A OXG-RCBH, oligoxylogluc 37.6 4.5E+02 0.016 28.9 27.4 147 343-493 14-190 (789)
382 3f7f_A Nucleoporin NUP120; nuc 35.3 50 0.0017 36.2 6.2 37 345-383 223-259 (729)
383 3q6k_A 43.2 kDa salivary prote 35.0 3.6E+02 0.012 26.9 22.4 187 323-538 124-342 (381)
384 3f7f_A Nucleoporin NUP120; nuc 34.2 1.3E+02 0.0046 32.9 9.4 31 529-559 229-259 (729)
385 4a9v_A PHOX; hydrolase, beta-p 32.4 1.6E+02 0.0055 31.3 9.4 60 521-580 477-549 (592)
386 1zvt_A Topoisomerase IV subuni 28.2 3.7E+02 0.013 25.0 10.8 153 398-550 1-163 (256)
387 2cn3_A Xyloglucanase, beta-1,4 24.8 6.9E+02 0.024 27.1 25.8 27 345-371 24-51 (737)
388 4d9s_A UVB-resistance protein 22.8 5.6E+02 0.019 25.3 29.1 149 431-589 122-301 (406)
389 4d9s_A UVB-resistance protein 21.8 5.9E+02 0.02 25.1 38.2 271 301-589 17-353 (406)
390 1sr4_A CDT A, cytolethal diste 20.7 2.4E+02 0.0083 25.4 7.0 95 322-425 69-166 (206)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.5e-43 Score=361.14 Aligned_cols=293 Identities=23% Similarity=0.352 Sum_probs=258.9
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCe
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
++.+..+++.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ ..+..+..+..|...|.+++|+|++++|++|+.|+.
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET-TTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccchhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 345678899999999999999999 899999999999999999 678888899999999999999999999999999999
Q ss_pred EEEEECCCCc----EEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 367 IKYWDTETGQ----VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 367 I~vWd~~t~~----~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
|++|++.++. ....+..+ ....++.+.+. ..+++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD----NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCC----CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 9999998763 33444332 33445566553 349999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
++|++++.|+.|++||++....+..+. .|...|.+++|+|++++|++++.|+.|++||++....+... ........
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~~~~ 272 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY---SHDNIICG 272 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCTTCCSC
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE---ccCCcccc
Confidence 999999999999999999988877764 58889999999999999999999999999999876554322 22222346
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|+||+.||.|+|||
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 88999999999999999999999999999999999999999999999999 778999999999999998
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-43 Score=372.37 Aligned_cols=287 Identities=26% Similarity=0.463 Sum_probs=262.6
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
..++.+|..+|++++|+|+ +.+|++|+.||+|+|||+ ..+.+..++.+|...|.+++|+|++++|++|+.|++|+|||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 4568899999999999999 899999999999999999 68888999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 372 TETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 372 ~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
+.+++++..+..+ ..+.++.|.+++ .+|++|+.|+.|++||++++.++..+.+|...|.++.|++++.+|++++.|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 9999998888653 345677777754 689999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCceeEEEEcCC--------------------CCEEEEEEcCCeEEEEEcCCceeeccc
Q 007768 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN--------------------TNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~--------------------g~~la~~s~dg~I~iwd~~~~~~~~~~ 510 (590)
++|++||+.+......+. .|...|.+++|+|+ +.+|++++.|+.|++||++++..+
T Consensus 256 ~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~--- 331 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL--- 331 (410)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE---
T ss_pred CeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE---
Confidence 999999999988877664 58889999999996 679999999999999999987655
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 511 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+.+| ...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+| ++.+|+||+.||+|+|||
T Consensus 332 ~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 332 MTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred EEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEe
Confidence 345566 56788999999999999999999999999999999999999999999999999 677999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=354.23 Aligned_cols=290 Identities=19% Similarity=0.353 Sum_probs=258.3
Q ss_pred ceEEEecCCCCCeeEEEEcCC---CCCEEEEEeCCCcEEEEecCCCCe--eEEEeccCCCCeEEEEEccCCCEEEEEecC
Q 007768 290 RLVHTWSGHTKGVSAIRFFPK---YGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~---~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
.+.+.+++|.+.|++|+|+|+ ++.+|++|+.|++|+||++. ... +...+.+|...|.+++|++++.++++++.|
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~-~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR-DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC-CCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 345677899999999999985 36799999999999999994 343 455789999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007768 365 KNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
+.|++||+.+++.+..+..+. ....+.|+|++ .+|++|+.++.|++||+++++....+..|...|.+++|+|++++
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS---QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTS---SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCC---CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 999999999999988886543 45577888755 68999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceE
Q 007768 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
|++++.|+.|++||++++..+..+. .|...|.+++|+|++.+|++++.|+.|++||++..... ..+.+| ...|.
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~h--~~~v~ 252 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA---GTLSGH--ASWVL 252 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE---EEECCC--SSCEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee---EEEcCC--CCceE
Confidence 9999999999999999998887764 58889999999999999999999999999999876544 345566 56788
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+++|+|++++|++|+.||.|+|||+.+++++..+.+|...|.+++|+| ++.+|++++.||.|+|||
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEe
Confidence 999999999999999999999999999999999999999999999999 778999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-41 Score=351.32 Aligned_cols=292 Identities=18% Similarity=0.288 Sum_probs=255.2
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
.+..+++.||.+.|++++|+|+ +.+|+||+.||+|+|||. ..++....+..|...|.+++|+|+|.+|++++.|+.|+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDS-FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred cEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 4677899999999999999999 899999999999999998 57778888889999999999999999999999999999
Q ss_pred EEECCCCc------EEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC--
Q 007768 369 YWDTETGQ------VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-- 439 (590)
Q Consensus 369 vWd~~t~~------~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p-- 439 (590)
+|++.... ....+. ....+..+.|.+++ ..|++++.|+.|++||+++++++..+.+|...|.++.|+|
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD---MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 99986542 122222 23344566666644 5799999999999999999999999999999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
++++|++++.||.|++||++++..+..+. .|...|.+++|+|++.+|++++.|+.|++||++....+.. +..+...
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~---~~~~~~~ 284 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI---YSKESII 284 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCTTCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE---EcCCCcc
Confidence 46899999999999999999998877764 5888999999999999999999999999999987654432 2222223
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.||+|+|||
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 4577899999999999999999999999999999999999999999999999 778999999999999997
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-41 Score=343.44 Aligned_cols=288 Identities=19% Similarity=0.326 Sum_probs=255.2
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
++.++|.+|.+.|++|+|+|+ +.+|++|+.||+|+|||+ ..+..++.+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 567889999999999999999 899999999999999999 688899999999999999999999999999999999999
Q ss_pred EECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC-CCCEEEE
Q 007768 370 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVT 446 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p-~~~~l~s 446 (590)
||+.+++++..+..+ ..+.++.+++++ .+|++|+.|+.|++||++++ .+...+.+|...|.+++|+| ++..|++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCC---CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 999999999888654 345677777754 68999999999999999987 56678899999999999999 6789999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007768 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp--~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
++.|++|++||++.......+...+...+..+.|+| ++.+|++++.|+.|++||++++..+ ..+.+| ...+..
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~---~~~~~h--~~~v~~ 233 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEGH--MSNVSF 233 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE---EEEECC--SSCEEE
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc---eeeCCC--CCCEEE
Confidence 999999999999887776666666778899999987 6789999999999999999987655 445566 467889
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCC-EEEEEeCCCcEE
Q 007768 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCGWDGLIK 587 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~s~g~Dg~I~ 587 (590)
++|+|++++|++|+.||.|++||+.+++++..+..|...+.+++|+|.+.. +|++|+.||.+.
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 999999999999999999999999999999999999999999999996554 478877766543
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-40 Score=337.66 Aligned_cols=293 Identities=26% Similarity=0.535 Sum_probs=259.9
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
..+..++.+|...|++++|+|+ +++|++|+.||.|+||++ ..++....+.+|...|.+++|+|++++|++|+.|+.|+
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeC-CCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 4677889999999999999999 899999999999999999 67888899999999999999999999999999999999
Q ss_pred EEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007768 369 YWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
+||+.+++++..+..+. .+.++.+.+++ .+|++|+.|+.|++||+++++.+..+..|..+|.+++|+|++++|+++
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 99999999988886543 45566777644 689999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007768 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
+.|+.|++||+++...+..+...+...+..++|+|++++|++++.|+.|++||+.+...+.. +.+|..........+
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT---YTGHKNEKYCIFANF 244 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE---ECSSCCSSSCCCEEE
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---EEecCCceEEEEEEE
Confidence 99999999999999888887766778899999999999999999999999999988765533 334433233223344
Q ss_pred -cCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEe--CCCcEEEcC
Q 007768 528 -SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG--WDGLIKYWD 590 (590)
Q Consensus 528 -spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g--~Dg~I~iWD 590 (590)
.+++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+| ++.+|++++ .||+|++|+
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWK 309 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEE
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEec
Confidence 46889999999999999999999999999999999999999999 778999987 699999995
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-42 Score=360.71 Aligned_cols=296 Identities=22% Similarity=0.404 Sum_probs=250.6
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeE
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 367 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I 367 (590)
...+.++|.||.+.|++++|+|+ +.+|++|+.||+|+|||+ ..+..+..+..|...|.+++|+|+|++|++|+.|+.|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~-~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNA-LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEET-TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred eeEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 34678899999999999999999 899999999999999999 6788899999999999999999999999999999999
Q ss_pred EEEECCCCc-------EEEEecCCCc--ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-----cCcCCcee
Q 007768 368 KYWDTETGQ-------VIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-----DQHLGAVN 433 (590)
Q Consensus 368 ~vWd~~t~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-----~~h~~~V~ 433 (590)
++||+.+.. ....+ .++. ...+.+.+. ....|++|+.|+.|++||+++++.+..+ .+|...|.
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPD--QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSS--SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred EEEECCCCccccCCccceeec-cCCCcceEEEEEecC--CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999997542 11222 2222 334444443 3467999999999999999999988877 67899999
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 434 TITFVD-SNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 434 ~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
++.|++ ++.+|++|+.|++|++||++.. ..+..+ ..|...|.+++|+|++.+|++++.|+.|++||++++..+....
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 999987 7889999999999999999854 444444 4689999999999999999999999999999999876654332
Q ss_pred cccCc--ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE----ecCCCcEEEEEEcCCCCCEEEEEeCCCc
Q 007768 512 RFAGH--IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 512 ~~~~~--~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l----~~h~~~V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
..... .....+.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+| ++.+|+||+.||+
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKN 367 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSC
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCC
Confidence 21111 11234778999999999999999999999999999998888 67999999999999 7889999999999
Q ss_pred EEEcC
Q 007768 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|+|||
T Consensus 368 i~iW~ 372 (380)
T 3iz6_a 368 LKIWA 372 (380)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-39 Score=332.61 Aligned_cols=288 Identities=20% Similarity=0.378 Sum_probs=249.1
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC----CeeEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+..+|.||.+.|++|+|+|+++++|++|+.|++|++|++... +.++..+.+|...|.+++|+|++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4677899999999999999986799999999999999998422 346778999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC----
Q 007768 366 NIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---- 440 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~---- 440 (590)
+|+|||+.+++++..+..+. .+.++.+.+++ .+|++|+.|+.|++||++ +..+..+.+|...|.++.|+|.
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKA---SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS---CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 99999999999998886543 45566676643 689999999999999997 4577788899999999999985
Q ss_pred --CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccc
Q 007768 441 --NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 441 --~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
+..|++++.|+.|++||++.......+. .|...|.+++|+|++.+|++++.|+.|++||+.+...+... ..
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~---~~--- 236 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SA--- 236 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE---EC---
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cC---
Confidence 4489999999999999999887776654 58899999999999999999999999999999887655433 22
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec--------CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~--------h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
...+.+++|+|++.+|++++.+ .+++|++.....+..+.. |...+.+++|+| ++.+|++|+.||.|+|||
T Consensus 237 ~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEE
Confidence 2468899999999999988865 599999999888877753 456799999999 788999999999999997
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-39 Score=364.00 Aligned_cols=323 Identities=21% Similarity=0.336 Sum_probs=259.7
Q ss_pred CCCCcccCCcce-eecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007768 246 GEKGEHVEDKST-FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 246 ~~~~~~~~~~s~-~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I 324 (590)
......+.+... ...++..|...|.|-. .+.++++++.+|...|++++|+|+ +.+|++|+.|++|
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-------------~~~~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i 214 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEG-------------PPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTI 214 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEET-------------TTBEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEEC-------------CCCeEeeeeccccCceEEEEECCC-CCEEEEEECCCcE
Confidence 344445555544 4678888999999943 234678899999999999999999 9999999999999
Q ss_pred EEEecCCCCeeEEEec-------cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC--------------
Q 007768 325 KIWDVVNSGKCMRTYM-------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-------------- 383 (590)
Q Consensus 325 ~iWd~~~~~~~~~~~~-------~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-------------- 383 (590)
+|||+ ..++++..+. +|...|.+++|+|++++|++++.|++|++||+.+++++..+..
T Consensus 215 ~lwd~-~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
T 1nr0_A 215 VLYNG-VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293 (611)
T ss_dssp EEEET-TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred EEEEC-CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc
Confidence 99999 5777887774 7999999999999999999999999999999999887765432
Q ss_pred ----------------------------CC--cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-c------
Q 007768 384 ----------------------------GK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-D------ 426 (590)
Q Consensus 384 ----------------------------~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-~------ 426 (590)
++ .+..++++++ +.+|++++.|+.|++||+.+++....+ .
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd---g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD---GKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence 12 2345556554 368999999999999999876443221 0
Q ss_pred ---------------------------------------------------------------------------CcCCc
Q 007768 427 ---------------------------------------------------------------------------QHLGA 431 (590)
Q Consensus 427 ---------------------------------------------------------------------------~h~~~ 431 (590)
.|...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 450 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 450 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence 12345
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
+.+++|+|++++|++++.|++|++||+............|...|.+++|+|++++|++++.|+.|++|++.+...+....
T Consensus 451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~ 530 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC
T ss_pred ceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee
Confidence 67899999999999999999999999977643222224688899999999999999999999999999998632222211
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe-EE-EEEecC-CCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VF-RTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~-~~-~~l~~h-~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
.+.+| ...|.+++|+|+|++|++|+.|+.|+|||+.++. .+ ..+.+| ...|.+++|+| ++. |++++.||+|++
T Consensus 531 ~~~~H--~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~l 606 (611)
T 1nr0_A 531 SWTFH--TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKF 606 (611)
T ss_dssp CCCCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEE
T ss_pred eeeec--ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEE
Confidence 23335 5679999999999999999999999999998865 33 566789 78999999999 555 999999999999
Q ss_pred cC
Q 007768 589 WD 590 (590)
Q Consensus 589 WD 590 (590)
||
T Consensus 607 W~ 608 (611)
T 1nr0_A 607 WN 608 (611)
T ss_dssp EE
T ss_pred Ee
Confidence 96
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=335.13 Aligned_cols=295 Identities=18% Similarity=0.303 Sum_probs=241.1
Q ss_pred ceEEEecCCCC-CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeE--E-EeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 290 RLVHTWSGHTK-GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM--R-TYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~i~~l~gH~~-~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~-~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.++.++.+|.. .|.+|+|+|+ +.+|++|+.|++|+||++. .+... . ...+|...|.+++|+|++++|++|+.|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEE-TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcC-CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 57889999998 9999999999 8999999999999999994 44322 2 2368999999999999999999999999
Q ss_pred eEEEEECCCCc--EEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeC
Q 007768 366 NIKYWDTETGQ--VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 366 ~I~vWd~~t~~--~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~---~~~~~~~~h~~~V~~i~~~p 439 (590)
.|++||+.++. ++..+..+ ..+.+++|++++ .+|++|+.|+.|++||++++ ..+..+..|...|.+++|+|
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG---NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC---CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 99999998774 45555443 345677777754 68999999999999999876 34667889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec----------
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN---------- 508 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~---------- 508 (590)
++.+|++++.|+.|++||+...... ......|...|.+++|+|++++|++++.|+.|++|+........
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence 9999999999999999999876533 22334688999999999999999999999999999964321110
Q ss_pred --ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe--------E-EEEEecCCCcEEEEEEcCCCCCEE
Q 007768 509 --KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--------V-FRTLKCHEGVCIGCEWHPLEQSKV 577 (590)
Q Consensus 509 --~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~--------~-~~~l~~h~~~V~~v~~sp~~~~~l 577 (590)
....+.+. ....|.+++|+|++.+|++++.|+.|++|+..... . .....+|...|.+++|+|++..+|
T Consensus 241 ~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 241 WKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred cceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 01122221 24578899999999999999999999999986542 1 222357999999999999666799
Q ss_pred EEEeCCCcEEEcC
Q 007768 578 ATCGWDGLIKYWD 590 (590)
Q Consensus 578 ~s~g~Dg~I~iWD 590 (590)
+||+.||+|+|||
T Consensus 320 aS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 320 ASCSDDGEVAFWK 332 (345)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEE
Confidence 9999999999996
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-39 Score=363.24 Aligned_cols=336 Identities=16% Similarity=0.296 Sum_probs=267.1
Q ss_pred CCCCcccCCcceeecccccccccceeecCCccc--c-c-------cC-----------------------CCccCCcceE
Q 007768 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDA--K-A-------AN-----------------------DHCYIPKRLV 292 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~--~-~-------~~-----------------------~~~~~p~~~i 292 (590)
......+.+...+.+++..|..+|+|-...... . . .. .+.+-....+
T Consensus 61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~ 140 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 140 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC
T ss_pred ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCc
Confidence 344456777777888888899999996431110 0 0 00 0001122344
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
.++.+|...|++++|+|++..+|++|+.|++|++||. ...+++.++.+|...|.+++|+|+|++|++|+.|++|+|||+
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET-TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC-CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 5678999999999999994457999999999999998 678889999999999999999999999999999999999999
Q ss_pred CCCcEEEEec--------CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE---------------------
Q 007768 373 ETGQVIRTFS--------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--------------------- 423 (590)
Q Consensus 373 ~t~~~~~~~~--------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~--------------------- 423 (590)
.+++++..+. ....+..+.|+|++ .+|++++.|+.|++||+++++++.
T Consensus 220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (611)
T 1nr0_A 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG---TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296 (611)
T ss_dssp TTCCEEEECBCTTSSSCSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred CCCcEeeeeccccccccccCCCEEEEEECCCC---CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence 9999988874 23345667777654 689999999999999999876543
Q ss_pred ----------------------EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec------------
Q 007768 424 ----------------------EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE------------ 469 (590)
Q Consensus 424 ----------------------~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~------------ 469 (590)
.+.+|...|++++|+|++++|++++.|++|++||+.++.....+..
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 3457889999999999999999999999999999876543222100
Q ss_pred ---------------------------------------------------------------------CCCCceeEEEE
Q 007768 470 ---------------------------------------------------------------------PHMHSMPSISL 480 (590)
Q Consensus 470 ---------------------------------------------------------------------~~~~~i~~i~~ 480 (590)
.+...+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 01234678999
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeEEEE--E
Q 007768 481 HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRT--L 557 (590)
Q Consensus 481 sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~~~~--l 557 (590)
+|++++|++++.|+.|++|++....... ... .+| ...|.+++|+|+|++|++++.|+.|++||+.+ ++++.. +
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~~~-~~~-~~h--~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~ 532 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASVSE-VKT-IVH--PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW 532 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEE-EEE-EEC--SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCceee-eec-cCC--CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeee
Confidence 9999999999999999999997653211 122 334 56799999999999999999999999999988 666554 3
Q ss_pred ecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 558 KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 558 ~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..|...|.+++|+| ++.+|+||+.|++|+|||
T Consensus 533 ~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 533 TFHTAKVACVSWSP-DNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred eecccceeEEEECC-CCCEEEEEECCCcEEEEE
Confidence 45999999999999 788999999999999996
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.3e-40 Score=338.45 Aligned_cols=282 Identities=18% Similarity=0.300 Sum_probs=232.1
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecC----------CCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCe
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV----------NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~----------~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
.|...|.+++|+|+ |.+|++++ |+++++||.. ...........|...|.+++|+|++ .|++|+.||.
T Consensus 28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 57778999999999 89998888 7788888731 0111122233467789999999985 7889999999
Q ss_pred EEEEECCCCcEEEEec-----CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007768 367 IKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
|+|||+.+++.+..+. +...+.+++|++++ .+|++|+.|+.|++||+++++++..+.+|...|++++|++++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg---~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG---TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence 9999999987654432 23445677777654 689999999999999999999999999999999999999987
Q ss_pred C-EEEEEeCCCcEEEEECCCCcEEEEeec-CCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCccc
Q 007768 442 R-RFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 442 ~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
. +|++++.|++|++||+++++....+.. .+...+.+++|+|+ +.+|++|+.|+.|++||++++..+ ..+.+|
T Consensus 182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~---~~~~~h-- 256 (344)
T 4gqb_B 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV---LSSAVH-- 256 (344)
T ss_dssp TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC---EEEECC--
T ss_pred CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE---EEEcCC--
Confidence 4 789999999999999999888777643 34567899999995 578999999999999999887554 445666
Q ss_pred ccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 519 AGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 519 ~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
...|.+++|+|+| ++|++|+.||.|+|||+.+++++ .+.+|.+.|++++|+|++..+|+|||.||+|++|+
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 5678999999998 58999999999999999998865 57899999999999997777899999999999995
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.3e-40 Score=340.49 Aligned_cols=283 Identities=19% Similarity=0.327 Sum_probs=231.3
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeC------CCcEEEEecCCCCe----eEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 296 SGHTKGVSAIRFFPKYGHLILSAGM------DTKVKIWDVVNSGK----CMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~sgs~------Dg~I~iWd~~~~~~----~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+|...|++|+|+|+ |.+|++|+. |+.|++|+.. .+. ......+|...|.+++|+|++. +++++.||
T Consensus 39 ~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~-~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 39 ACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDP-EGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp -CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSC-C---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred ccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECC-CCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 479999999999999 999999998 7789999873 332 3344567999999999999875 66788899
Q ss_pred eEEEEECCCCcEEEEec-----CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007768 366 NIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
.|+|||+.+++...... ....+.+++|++++ .+|++|+.|+.|++||+++++.+..+..|...|++++|+++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG---TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 99999999887653321 23445677777654 68999999999999999999999999999999999999998
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEEEee-cCCCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCcc
Q 007768 441 NR-RFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 441 ~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~-~~~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
+. +|++++.|+.|++||++++.....+. ..+...+.+++|+|+ +.+|++++.|+.|++||+++...+ ..+.+|
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~---~~~~~~- 268 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA---QTSAVH- 268 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC---EEECCC-
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe---EEEecc-
Confidence 75 78999999999999999887665543 245667999999997 568999999999999999886544 345555
Q ss_pred cccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 518 VAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 518 ~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
...|.+++|+|++ ++|++|+.||.|+|||+.+++++..+ +|.+.|++++|+|.++.+|+|||.||+|++||
T Consensus 269 -~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 269 -SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp -SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred -ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 4678899999987 57999999999999999999888765 79999999999997788999999999999996
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.3e-38 Score=320.55 Aligned_cols=289 Identities=23% Similarity=0.393 Sum_probs=244.6
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC----CeeEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+..+|+||++.|++|+|+|+++++|+||+.||+|+|||+... ..+.+.+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 4667899999999999999987899999999999999998432 246778899999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEecCCCcce-EEEEecCCCCCcEEEEEECCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCCC--
Q 007768 366 NIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSN-- 441 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-~~~~~~h~~~V~~i~~~p~~-- 441 (590)
.|++|+................. ...+.+. ..+|++|+.|+.+++||+..... ......|...+.+++|++++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTT---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeec---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 99999999988877766554433 4444443 36799999999999999987644 34456789999999998764
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
..+++++.|+.|++||++....+..+. .|...|.+++|+|++++|++++.|+.|++||+++...+... .. ...
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~---~~---~~~ 258 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL---DG---GDI 258 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE---EC---SSC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee---cC---Cce
Confidence 578899999999999999988877764 58899999999999999999999999999999987655433 22 256
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe---------cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~---------~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+..++|+|++.+++ ++.|+.|++||+.++.++..+. +|...|++++|+| ++.+|++|+.||.|+|||
T Consensus 259 v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 259 INALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred EEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEe
Confidence 88899999987654 5569999999999988776654 5788999999999 778999999999999997
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-38 Score=332.99 Aligned_cols=289 Identities=20% Similarity=0.373 Sum_probs=244.0
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC------------------CeEEEEEcc
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK------------------AVRDISFCN 353 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~------------------~V~~l~fsp 353 (590)
.+.+ +|...|+|++|+|+ +++|++|+ ++.++||++ ..+..+..+..|.. .|++++|+|
T Consensus 58 ~~~~-~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 58 HKSL-DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEE-ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred EEec-CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 3444 69999999999999 89999976 789999999 67777777765542 499999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCce
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 432 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V 432 (590)
+|++|++|+.|+.|+|||+.+++.+..+..+ ..+.++.|.+++ .+|++|+.|+.|++||+++++....+. +...+
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v 209 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGV 209 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCc
Confidence 9999999999999999999999998887654 345677777654 589999999999999999998887775 56789
Q ss_pred eEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEee------cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007768 433 NTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYIS------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 433 ~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~------~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~ 505 (590)
.+++|+| ++++|++++.|+.|++||++++..+..+. ..|...|.+++|+|++.+|++++.|+.|++||+....
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999999 89999999999999999999888776653 3578899999999999999999999999999997643
Q ss_pred eec---------ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCC----
Q 007768 506 QLN---------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL---- 572 (590)
Q Consensus 506 ~~~---------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~---- 572 (590)
... ....+.+| ...|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|...|.+++|++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~ 367 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 367 (393)
T ss_dssp -----------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTC
T ss_pred CcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcC
Confidence 211 12234455 467889999999999999999999999999999999999999999999999872
Q ss_pred -CCCEEEEEeCCCcEEEcC
Q 007768 573 -EQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 573 -~~~~l~s~g~Dg~I~iWD 590 (590)
++.+|+||+.||+|+|||
T Consensus 368 p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 368 PEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp TTCEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEECCCCcEEECc
Confidence 457899999999999996
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.9e-38 Score=324.84 Aligned_cols=288 Identities=20% Similarity=0.358 Sum_probs=237.4
Q ss_pred ceEEEecCCCCCeeEEEE-----cCCCCCEEEEEeCCCcEEEEecCCC------CeeEEEeccCCCCeEEEEEccCCCEE
Q 007768 290 RLVHTWSGHTKGVSAIRF-----FPKYGHLILSAGMDTKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCNDGTKF 358 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~-----sp~~g~~L~sgs~Dg~I~iWd~~~~------~~~~~~~~~h~~~V~~l~fspdg~~l 358 (590)
.+..+|.||.+.|++|+| ++.++.+|++|+.|++|+|||+... +.+...+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 567889999999999999 7733899999999999999999432 34677889999999999999999999
Q ss_pred EEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc---CcCCceeE
Q 007768 359 LTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAVNT 434 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~---~h~~~V~~ 434 (590)
++|+.|++|++||+.+++.+..+..+ ..+.++.|++++ .+|++|+.|+.|++||+... ...... .|...|.+
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---RQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---TEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---CEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeee
Confidence 99999999999999999998888653 455677787754 68999999999999999843 333333 68899999
Q ss_pred EEEeCCC----------CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007768 435 ITFVDSN----------RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 435 i~~~p~~----------~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~ 504 (590)
+.|+|++ .+|++++.|+.|++||.. ......+ ..|...|.+++|+|++++|++++.|+.|++||+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999987 789999999999999953 3444333 468899999999999999999999999999999543
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEE--EEe-----------cCCCcEEEEEEcC
Q 007768 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLK-----------CHEGVCIGCEWHP 571 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~--~l~-----------~h~~~V~~v~~sp 571 (590)
.... ..+. + ...+.+++|+|++.+|++| .|+.|++||+.+++... .+. +|...|.+++|+|
T Consensus 246 ~~~~--~~~~-~--~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 246 TYPQ--REFD-A--GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp SSCS--EEEE-C--SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred cccc--eeec-C--CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 2211 1111 1 3458899999999988766 57789999998876543 443 6788899999999
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 007768 572 LEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 572 ~~~~~l~s~g~Dg~I~iWD 590 (590)
++.+|++|+.||.|++||
T Consensus 320 -~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 320 -LGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp -SSCCEEEEETTSEEEEEE
T ss_pred -CCCeEEEecCCceEEEEE
Confidence 778999999999999996
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=321.80 Aligned_cols=287 Identities=18% Similarity=0.304 Sum_probs=256.3
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
....+.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ ..++.+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYS-LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeC-CCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 45678999999999999999 999999999999999999 6888999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC-----CeEEEEeCCCCc-----------eEEEEcCcCC--ce
Q 007768 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKE-----------ITQEYDQHLG--AV 432 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~t~~-----------~~~~~~~h~~--~V 432 (590)
|+.+++++..+.....+..+.+.+++ .++++++.+ +.|++||+.... .+..+..|.+ .+
T Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWKSPVPVKRVEFSPCG---NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECTTS---SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEeecCCCeEEEEEccCC---CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99999999999877778888888754 688999888 999999997653 3344555666 99
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 433 NTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
.+++|+|++++|++++.||.|++||++. ...+..+. .+...|.+++|+|++.+|++++.|+.|++||+.+........
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence 9999999999999999999999999998 45555554 588899999999999999999999999999998876554333
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCC--------------cEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEE
Q 007768 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGEG--------------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 577 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg--------------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l 577 (590)
....+..++|+|+++++++++.++ .|++||+.+++++..+.+|...|.+++|+| ++.+|
T Consensus 258 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 330 (369)
T 3zwl_B 258 ------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QGTSY 330 (369)
T ss_dssp ------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEE
T ss_pred ------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CCCEE
Confidence 245678899999999999999988 899999999999999999999999999999 77899
Q ss_pred EEEeCCCcEEEcC
Q 007768 578 ATCGWDGLIKYWD 590 (590)
Q Consensus 578 ~s~g~Dg~I~iWD 590 (590)
++++.||.|+|||
T Consensus 331 ~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 331 ASGGEDGFIRLHH 343 (369)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEEcCCCeEEEEE
Confidence 9999999999996
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-37 Score=343.16 Aligned_cols=309 Identities=25% Similarity=0.494 Sum_probs=263.6
Q ss_pred cccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 007768 250 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
..+.+...+..+...|...|.|-. ..+++..+.+|...|.+++|+|+ +.+|++++.|+.|++|++
T Consensus 268 v~~~~d~~~l~~~~~d~~i~~w~~--------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 268 VAFRPDGQTIASASDDKTVKLWNR--------------NGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNR 332 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEET--------------TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeC--------------CCcEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeC
Confidence 344444445556666777787742 23567788999999999999999 899999999999999998
Q ss_pred CCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECC
Q 007768 330 VNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 330 ~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
.+..+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.. ...+..+++.+++ .+|++++.|
T Consensus 333 --~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~~~~d 406 (577)
T 2ymu_A 333 --NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG---QTIASASDD 406 (577)
T ss_dssp --TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS---SCEEEEETT
T ss_pred --CCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC---CEEEEEeCC
Confidence 45677888999999999999999999999999999999996 5666666654 3445677777754 579999999
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEE
Q 007768 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la 488 (590)
+.|++||. +++.+..+..|...|++++|+|++++|++++.|+.|++||.. ...+..+. .|...|.+++|+|++++|+
T Consensus 407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~-~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp SEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEE-CCSSCEEEEEECTTSCEEE
T ss_pred CEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEc-CCCCCEEEEEEcCCCCEEE
Confidence 99999995 567888899999999999999999999999999999999975 44455544 5889999999999999999
Q ss_pred EEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEE
Q 007768 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 489 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+++.|+.|++|+... ..+ ..+.+| ...|.+++|+|+|++|++++.||.|+|||. +++++..+.+|.+.|++++
T Consensus 484 s~~~d~~i~iw~~~~-~~~---~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 484 SASDDKTVKLWNRNG-QLL---QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp EEETTSEEEEEETTS-CEE---EEEECC--SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred EEeCCCEEEEEcCCC-CEE---EEEeCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEE
Confidence 999999999999643 333 445666 567899999999999999999999999995 7889999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEcC
Q 007768 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|+| ++++|+|+|.||+|++||
T Consensus 557 fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 557 FSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECT-TSSCEEEEETTSCEEEEC
T ss_pred EcC-CCCEEEEEeCCCEEEEeC
Confidence 999 678999999999999998
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=320.07 Aligned_cols=292 Identities=17% Similarity=0.265 Sum_probs=233.1
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC-CeeEEEe-cc-CCCCeEEEEEccCCCEEEEEecCC
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-GKCMRTY-MG-HSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~-~~-h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.++++++.+|.+.|.+++|+|+ +|++|+.|++|+||++... ...+..+ .+ |...|++++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4578899999999999999976 9999999999999999432 2455566 44 999999999999999999999999
Q ss_pred eEEEEECCC-------CcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC----CceEEEEcCcCCcee
Q 007768 366 NIKYWDTET-------GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVN 433 (590)
Q Consensus 366 ~I~vWd~~t-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t----~~~~~~~~~h~~~V~ 433 (590)
.|+|||+.. .+++..+.. ...+.++.|++++ .+|++|+.|+.|++||++. .+++..+.+|...|.
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g---~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG---YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS---CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC---CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 999999853 344555543 3345677777754 6899999999999999953 256778899999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCC--cEEEEeecCCCCceeEEEEcCC--CCEEEEEEcCCeEEEEEcCCcee---
Q 007768 434 TITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQ--- 506 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~--g~~la~~s~dg~I~iwd~~~~~~--- 506 (590)
+++|+|++.+|++++.|++|++||+... .++..+ ..|...|.+++|+|+ +.+|++++.|+.|++|++.....
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 9999999999999999999999998765 344444 468899999999998 77999999999999999865311
Q ss_pred --ecccccccC-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe--EEEEE-ecCCC-cEEEEEEcCC-CCCEEE
Q 007768 507 --LNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--VFRTL-KCHEG-VCIGCEWHPL-EQSKVA 578 (590)
Q Consensus 507 --~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~--~~~~l-~~h~~-~V~~v~~sp~-~~~~l~ 578 (590)
......+.+ | ...|.+++|++++ +|++|+.||.|+|||..++. ++... .+|.. .|.+++|+|. ++.+|+
T Consensus 237 ~~~~~~~~~~~~h--~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 237 QEWVCEAILPDVH--KRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEEEEEECCSCC--SSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred ceeEEeeeccccc--ccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 011122222 3 4678999999765 89999999999999998874 34333 57877 8999999995 467899
Q ss_pred EEeCCCcEEEcC
Q 007768 579 TCGWDGLIKYWD 590 (590)
Q Consensus 579 s~g~Dg~I~iWD 590 (590)
||+.||+|+|||
T Consensus 314 s~s~Dg~v~~W~ 325 (330)
T 2hes_X 314 TGGDDGIVNFWS 325 (330)
T ss_dssp EEETTSEEEEEE
T ss_pred EecCCCcEEEEE
Confidence 999999999996
No 20
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.2e-37 Score=324.60 Aligned_cols=288 Identities=14% Similarity=0.187 Sum_probs=250.6
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe------eEEEeccCCCCeEEEEEccC----C---C
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK------CMRTYMGHSKAVRDISFCND----G---T 356 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~------~~~~~~~h~~~V~~l~fspd----g---~ 356 (590)
.+.+.+.+|.+.|++|+|+| .+|++|+.||.|+||++. ... ++..+.+|...|.+++|+|+ + +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESB-CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECC-CcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 45678889999999999987 699999999999999994 454 78888899999999999999 9 9
Q ss_pred EEEEEecCCeEEEEECCCCcE-----EEEecCC------CcceEEEEe----cCCCCCcE-EEEEECCCeEEEEeCCC--
Q 007768 357 KFLTASYDKNIKYWDTETGQV-----IRTFSTG------KIPYVVKLN----PDDDKQNI-LLAGMSDKKIVQWDMNT-- 418 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~-----~~~~~~~------~~~~~~~~~----~~~~~~~~-lvsg~~dg~I~iwD~~t-- 418 (590)
+|++++.||.|++||+.+++. +..+... ..+.++.+. +++ .+ |++++.||.|++||+++
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL---SHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC---ceEEEEEeCCCcEEEEeCCccc
Confidence 999999999999999998886 6766655 566778887 543 57 99999999999999998
Q ss_pred ----CceEE-----EE-------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC--C---CCceeE
Q 007768 419 ----KEITQ-----EY-------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP--H---MHSMPS 477 (590)
Q Consensus 419 ----~~~~~-----~~-------~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~--~---~~~i~~ 477 (590)
++.+. .+ ..|...|.+++|+|++ +|++++.|+.|++||++....+..+... | ...|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence 66555 66 4588999999999999 9999999999999999998887777531 5 789999
Q ss_pred EEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccC-------------cccccceEEEEEcCCCCEEEEEcCCC
Q 007768 478 ISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAG-------------HIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 478 i~~sp~g~~la~~s~d---g~I~iwd~~~~~~~~~~~~~~~-------------~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
++|+|++.+|++++.| +.|++||+.+...+.. +.+ | ...+.+++|+|++++|++|+.||
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS---LSVPTHSSQASLGEFAH--SSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE---ECBC--------CCBSB--SSCEEEEEECSSSSEEEEEETTS
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccce---eccCccccccccccccc--CCcEEEEEECCCCCEEEEEeCCC
Confidence 9999999999999999 9999999988755533 333 3 56788999999999999999999
Q ss_pred cEEEEeCCCCeEEEEEe------cC---------------CCcEEEEEEcCCCC---------CEEEEEeCCCcEEEcC
Q 007768 542 KCWFWDWKSCKVFRTLK------CH---------------EGVCIGCEWHPLEQ---------SKVATCGWDGLIKYWD 590 (590)
Q Consensus 542 ~I~iwd~~t~~~~~~l~------~h---------------~~~V~~v~~sp~~~---------~~l~s~g~Dg~I~iWD 590 (590)
.|+|||+.+++++..+. .| ...|.+++|+|++. .+|++++.||.|+|||
T Consensus 314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 99999999999999999 88 89999999999432 7999999999999996
No 21
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-38 Score=334.73 Aligned_cols=299 Identities=14% Similarity=0.233 Sum_probs=245.6
Q ss_pred CcceEEEe-cCCCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEecCC---C--CeeEEEeccCCCCeEEEEEccCCCEEEE
Q 007768 288 PKRLVHTW-SGHTKGVSAIRFFP-KYGHLILSAGMDTKVKIWDVVN---S--GKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 288 p~~~i~~l-~gH~~~V~~l~~sp-~~g~~L~sgs~Dg~I~iWd~~~---~--~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
..+++.++ .+|.+.|++|+|+| + +.+|++|+.||+|+|||+.. . ......+ +|...|.+++|+|++.+|++
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 35678888 89999999999999 7 89999999999999999842 1 1223333 59999999999999999999
Q ss_pred EecCCeEEEEECC---CCcEEEEec-------------CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE
Q 007768 361 ASYDKNIKYWDTE---TGQVIRTFS-------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 424 (590)
Q Consensus 361 ~s~Dg~I~vWd~~---t~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~ 424 (590)
|+.||.|++||++ +++.+..+. ......++.+.+.+ .+.+|++|+.|+.|++||+++++.+..
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 9999999999995 555544332 22223333333332 347899999999999999999999999
Q ss_pred EcC--cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC----CCCEEEEEEcCCeEEE
Q 007768 425 YDQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP----NTNWLAAQSLDNQILI 498 (590)
Q Consensus 425 ~~~--h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp----~g~~la~~s~dg~I~i 498 (590)
+.. |.+.|++++|+|++.+|++++.||.|++||++....+..+...+...|.+++|+| ++.+|++++.|+.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 988 8999999999999999999999999999999999888887656788999997665 5779999999999999
Q ss_pred EEcCCceeeccccc---------------------ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE
Q 007768 499 YSTRERFQLNKKKR---------------------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 499 wd~~~~~~~~~~~~---------------------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
||+.++..+..+.. +.+......|.+++|+ ++++|++|+.||.|++||+.+++++..+
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 99987765433321 1221135568889999 8899999999999999999999887777
Q ss_pred ec-------------------------------------CCCcEEEEEEcCC-CCCEEEEEeCCCcEEEcC
Q 007768 558 KC-------------------------------------HEGVCIGCEWHPL-EQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 558 ~~-------------------------------------h~~~V~~v~~sp~-~~~~l~s~g~Dg~I~iWD 590 (590)
.+ |...|.+++|++. +..+|++|+.||.|+||.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 65 7889999999994 367999999999999995
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=324.35 Aligned_cols=327 Identities=16% Similarity=0.211 Sum_probs=272.3
Q ss_pred CCCCCcccCCcce-eecccccccccceeec----CCccccccCCCcc-CCcceEE------EecCCCCCeeEEEEcCCCC
Q 007768 245 GGEKGEHVEDKST-FHGKEETDYQGRSWIA----PPKDAKAANDHCY-IPKRLVH------TWSGHTKGVSAIRFFPKYG 312 (590)
Q Consensus 245 ~~~~~~~~~~~s~-~~~~~~~d~~~r~w~~----~~~~~~~~~~~~~-~p~~~i~------~l~gH~~~V~~l~~sp~~g 312 (590)
+......+.+... +......|...+.|-. ..... .+.+ ....+.+ ...+|...|++++|+|+ +
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~ 120 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK----YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-G 120 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC----------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-S
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc----cccccccccccccccccccccCCCCceEEEEEcCC-C
Confidence 4556666777776 7788888999999966 32210 0000 0001111 22347889999999998 9
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCc------
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI------ 386 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~------ 386 (590)
.+|++|+.||.|+||+. .+..+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.....
T Consensus 121 ~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp SEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred CEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 99999999999999994 7788899999999999999999999999999999999999999999888766543
Q ss_pred ----------ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007768 387 ----------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 387 ----------~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
...+.+.+. ..+++++.++.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDD----DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp -------CCCBSCCEEEET----TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eccccCCcceeeEEEEcCC----CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 556666664 469999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007768 457 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 457 dl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
|++....+..+. .+...|.+++|+|++ +|++++.|+.|++||+.+...+.. +..| ...+.+++|+|++++|++
T Consensus 275 d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~---~~~~--~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 275 HGGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL---SIVD--GVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp CSSSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE---EECT--TCCEEEEEECTTSSEEEE
T ss_pred ECCCCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe---cccC--CccEEEEEEcCCCCEEEE
Confidence 999887776664 488899999999999 999999999999999988765533 3334 457889999999999999
Q ss_pred EcCCCcEEEEeCCCCe--------------------EEEEEecCCC--cEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 537 GDGEGKCWFWDWKSCK--------------------VFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 537 gs~dg~I~iwd~~t~~--------------------~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++.||.|++||+.+++ ++..+..|.. .|.+++|+| ++.+|++++.||.|++||
T Consensus 348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEE
T ss_pred EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEe
Confidence 9999999999999888 8999999976 999999999 677999999999999996
No 23
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=322.33 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=250.3
Q ss_pred CcceEEEecCCCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEecCCCCeeEEEe-------------ccCCCCeEEEEEcc
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFP-KYGHLILSAGMDTKVKIWDVVNSGKCMRTY-------------MGHSKAVRDISFCN 353 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp-~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-------------~~h~~~V~~l~fsp 353 (590)
..+....+.+|.+.|++++|+| + +++|++|+.||.|+||++. .+.....+ .+|...|.+++|+|
T Consensus 32 ~~~~~~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 32 LNKDRDVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp ECTTEEECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred cCcceeeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 3455678889999999999999 7 9999999999999999994 44333222 25999999999999
Q ss_pred -CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCce
Q 007768 354 -DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 432 (590)
Q Consensus 354 -dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V 432 (590)
++.+|++++.||.|++||+.+++.+..+........+.+.+......++++|+.++.|++||+++++.+..+..|...|
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v 189 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI 189 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence 7889999999999999999999999999888888899999987777899999999999999999999999999999999
Q ss_pred eEEEEeCCCC-EEEEEeCCCcEEEEECCCCc-EEEEee--------------cCCCCceeEEEEcCCCCEEEEEEcCCeE
Q 007768 433 NTITFVDSNR-RFVTSSDDKSLRVWEFGIPV-VIKYIS--------------EPHMHSMPSISLHPNTNWLAAQSLDNQI 496 (590)
Q Consensus 433 ~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~-~~~~~~--------------~~~~~~i~~i~~sp~g~~la~~s~dg~I 496 (590)
.+++|+|++. .|++++.||.|++||++... .+..+. ..|...|.+++|+|++.+|++++.|+.|
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 269 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence 9999999998 58999999999999998765 222221 3577889999999999999999999999
Q ss_pred EEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCE
Q 007768 497 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 576 (590)
++||+.+..................+........+..+++++.++.|++||+.+++++..+.+|.+.|.+++|+| ++.+
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 348 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQE 348 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTE
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCE
Confidence 999998765443222111111111111122233455666777899999999999999999999999999999999 7789
Q ss_pred EEEEeCCCcEEEcC
Q 007768 577 VATCGWDGLIKYWD 590 (590)
Q Consensus 577 l~s~g~Dg~I~iWD 590 (590)
|++++.||.|++||
T Consensus 349 l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 349 LYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEECCCCeEEEEe
Confidence 99999999999996
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-36 Score=333.94 Aligned_cols=311 Identities=24% Similarity=0.487 Sum_probs=265.2
Q ss_pred CcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 007768 249 GEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 249 ~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd 328 (590)
...+.+...+..+...|...|.|-. ..+++..+.+|...|++++|+|+ +.+|++++.|+.|++|+
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~~w~~--------------~~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVKLWNR--------------NGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWN 290 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECT--------------TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC--------------CCCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEe
Confidence 3444555555566677888888832 23567889999999999999999 89999999999999999
Q ss_pred cCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC
Q 007768 329 VVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 329 ~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
. .++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+..............+.++++.+++ .++++|+.|
T Consensus 291 ~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~d 365 (577)
T 2ymu_A 291 R--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG---QTIASASDD 365 (577)
T ss_dssp T--TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS---SEEEEEETT
T ss_pred C--CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC---CEEEEEeCC
Confidence 7 57788899999999999999999999999999999999998766544433334555677777754 689999999
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEE
Q 007768 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la 488 (590)
+.|++||. +++.+..+..|...|++++|+|++++|++++.|+.|++||.. ...+..+. .|...|.+++|+|++++|+
T Consensus 366 g~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp SEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE-CCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec-CCCCCeEEEEECCCCCEEE
Confidence 99999995 567888899999999999999999999999999999999964 45555554 5888999999999999999
Q ss_pred EEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEE
Q 007768 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 489 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+++.|+.|++|+.... .+ ..+.+| ...+.+++|+|++++|++++.|+.|++|| .+++++..+.+|...|++++
T Consensus 443 ~~~~d~~v~~w~~~~~-~~---~~~~~~--~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~ 515 (577)
T 2ymu_A 443 SASDDKTVKLWNRNGQ-LL---QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 515 (577)
T ss_dssp EEETTSEEEEEETTSC-EE---EEEECC--SSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEE
T ss_pred EEcCCCEEEEEECCCC-EE---EEEcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEE
Confidence 9999999999997542 22 344555 46788999999999999999999999999 47889999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEcC
Q 007768 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|+| ++.+|++++.||.|+|||
T Consensus 516 ~s~-dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 516 FSP-DGQTIASASDDKTVKLWN 536 (577)
T ss_dssp ECT-TSSCEEEEETTSEEEEEC
T ss_pred EcC-CCCEEEEEECcCEEEEEe
Confidence 999 778999999999999997
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.9e-37 Score=320.63 Aligned_cols=291 Identities=16% Similarity=0.223 Sum_probs=241.3
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec--cCCCCeEEEEEcc-CCCEEEEEecC
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFCN-DGTKFLTASYD 364 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fsp-dg~~l~s~s~D 364 (590)
+.++.+++.+|...|++++|+|++..+|++|+.||.|+|||+ ..+.....+. +|...|.+++|+| ++++|++++.|
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDY-DVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEET-TSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeC-CCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 456778999999999999999993399999999999999999 4555555554 6999999999999 78999999999
Q ss_pred CeEEEEECCCCcEEEEecCC----CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007768 365 KNIKYWDTETGQVIRTFSTG----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~----~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
+.|++||+.+ ..+..+... ..+.++.+++++ .+|++|+.|+.|++||+ +++.+..+..|...|.+++|+|+
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR---QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT---TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC---CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence 9999999996 444444332 346677887754 68999999999999999 57788889999999999999999
Q ss_pred CC-EEEEEeCCCcEEEEECCC----CcEEEEeecCCCCceeEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007768 441 NR-RFVTSSDDKSLRVWEFGI----PVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 441 ~~-~l~s~s~Dg~I~iwdl~~----~~~~~~~~~~~~~~i~~i~~sp-~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
++ +|++++.|+.|++||++. ...+..+ .|...|.+++|+| ++.+|++++.|+.|++||+++...........
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 99 999999999999999987 5566555 4888999999999 99999999999999999998765443222111
Q ss_pred ----Ccc--------cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec--CCCcEEEEEEcCCCCCEEEEE
Q 007768 515 ----GHI--------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 515 ----~~~--------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~s~ 580 (590)
.+. ....+..++|+|+|++ +|+.||.|+|||+.+++++..+.+ |.+.+..++|+| ++.+|++|
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~ 370 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASG 370 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEe
Confidence 010 0123445777777777 788999999999999999999987 456777889999 77899999
Q ss_pred eCCCcEEEcC
Q 007768 581 GWDGLIKYWD 590 (590)
Q Consensus 581 g~Dg~I~iWD 590 (590)
+ ||.|+|||
T Consensus 371 s-d~~i~iw~ 379 (383)
T 3ei3_B 371 M-GFNILIWN 379 (383)
T ss_dssp E-TTEEEEEE
T ss_pred c-CCcEEEEe
Confidence 7 99999997
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-36 Score=344.01 Aligned_cols=289 Identities=23% Similarity=0.386 Sum_probs=245.9
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC----CeeEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
++...+++|++.|++|+|+|+++++|+||+.|++|+||++... +...+.+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4556789999999999999987789999999999999998432 345678899999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE---cCcCCceeEEEEeCCC
Q 007768 366 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDSN 441 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~---~~h~~~V~~i~~~p~~ 441 (590)
.|+|||+.++.++..+..+ ..+.+++|++++ .+|++|+.|+.|++||+......... .+|...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN---RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS---SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 9999999999998887654 345677777754 57999999999999998765433332 4688899999999986
Q ss_pred --CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007768 442 --RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 442 --~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
..|++++.|++|++||++.......+. .|...|.+++|+|++++|++++.|+.|++||+.++..+... .. .
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---~~---~ 602 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---EA---N 602 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---BC---S
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---cC---C
Confidence 589999999999999999888777664 58899999999999999999999999999999987665432 22 3
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC-------------------CcEEEEEEcCCCCCEEEEE
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-------------------GVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-------------------~~V~~v~~sp~~~~~l~s~ 580 (590)
..+.+++|+|++.+|++++ ++.|+|||+.+++++..+..+. ..|++++|+| ++.+|++|
T Consensus 603 ~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sg 680 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSG 680 (694)
T ss_dssp SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEE
T ss_pred CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEE
Confidence 5688999999999888876 5569999999999988876432 1378999999 78899999
Q ss_pred eCCCcEEEcC
Q 007768 581 GWDGLIKYWD 590 (590)
Q Consensus 581 g~Dg~I~iWD 590 (590)
+.||+|+|||
T Consensus 681 s~Dg~i~iW~ 690 (694)
T 3dm0_A 681 YTDGVIRVWG 690 (694)
T ss_dssp ETTSEEEEEE
T ss_pred cCCCeEEEEe
Confidence 9999999996
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.8e-36 Score=304.44 Aligned_cols=282 Identities=15% Similarity=0.307 Sum_probs=243.0
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--eeEEEec--cCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~--~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
...+|...|++++|+|+ +.+|++++ ||.|++|++.... ..+..+. +|...|.+++|+|++++|++++.|+.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34489999999999999 89999999 9999999994322 2333443 79999999999999999999999999999
Q ss_pred EECCCCc--EEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007768 370 WDTETGQ--VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 370 Wd~~t~~--~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s 446 (590)
||+.+++ ....+..+ .....+.+.+++ .++++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDS---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 9999887 44444333 345567777643 68999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEE
Q 007768 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
++.|+.|++||++....+..+ .+...+.+++|+|++.+|++++.++.|++|++.+.... .+..| ...+.+++
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~--~~~v~~~~ 272 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLH--ESCVLSLK 272 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----EECCC--SSCEEEEE
T ss_pred EecCCcEEEEECCCCceEeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE----EEcCC--ccceeEEE
Confidence 999999999999998887776 36778999999999999999999999999999876432 23344 56788999
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 527 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+| ++.+|++++.||.|++||
T Consensus 273 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEE
Confidence 9999999999999999999999999888554 4888999999999 678999999999999996
No 28
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.2e-37 Score=325.44 Aligned_cols=282 Identities=21% Similarity=0.419 Sum_probs=244.1
Q ss_pred CCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 007768 244 AGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTK 323 (590)
Q Consensus 244 ~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~ 323 (590)
.+......+.+...+..++..|..++.|-. ...++++++.+|.+.|++++|+|+ +.+|++|+.|++
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~-------------~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~ 173 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDY-------------ETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMT 173 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEET-------------TTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-------------CCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCe
Confidence 334444556666667788888888888843 334567899999999999999999 899999999999
Q ss_pred EEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCc-ceEEEEecCCCCCcEE
Q 007768 324 VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNIL 402 (590)
Q Consensus 324 I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 402 (590)
|+|||+ ....++.++.+|...|.+++|+|++++|++|+.|+.|++||+.++.++..+..+.. ...+.+.++ +.+|
T Consensus 174 i~iwd~-~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~---g~~l 249 (410)
T 1vyh_C 174 IKLWDF-QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD---GTLI 249 (410)
T ss_dssp CCEEET-TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT---SSEE
T ss_pred EEEEeC-CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC---CCEE
Confidence 999999 67889999999999999999999999999999999999999999999988865433 345555553 3689
Q ss_pred EEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC--------------------CCEEEEEeCCCcEEEEECCCCc
Q 007768 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--------------------NRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 403 vsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~--------------------~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
++|+.|+.|++||+++++....+..|...|.+++|+|+ +.+|++|+.|+.|++||++++.
T Consensus 250 ~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred EEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999999999999999999999986 6789999999999999999998
Q ss_pred EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCc
Q 007768 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 542 (590)
Q Consensus 463 ~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~ 542 (590)
++..+. .|...|.+++|+|++.+|++++.|+.|++||+.+...+ ..+.+| ...|.+++|+|++.+|++|+.||.
T Consensus 330 ~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~---~~~~~h--~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 330 CLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---KTLNAH--EHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp EEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC---EEEECC--SSCEEEEEECSSSSCEEEEETTSE
T ss_pred eEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE---EEEcCC--CCcEEEEEEcCCCCEEEEEeCCCc
Confidence 887775 58889999999999999999999999999999876544 345566 567999999999999999999999
Q ss_pred EEEEeCC
Q 007768 543 CWFWDWK 549 (590)
Q Consensus 543 I~iwd~~ 549 (590)
|+||+++
T Consensus 404 i~vW~~r 410 (410)
T 1vyh_C 404 VKVWECR 410 (410)
T ss_dssp EEEEC--
T ss_pred EEEEeCC
Confidence 9999863
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-36 Score=302.12 Aligned_cols=284 Identities=16% Similarity=0.245 Sum_probs=244.3
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCe
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
.+.++++++.+|.+.|++++| |+ +.+|++|+.||.|+|||+ ..+.....+..|...|.+++|+|++++|++++.||.
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSK-DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEE-SSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEEC-CCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence 355788999999999999999 87 889999999999999999 678888899999999999999999999999999999
Q ss_pred EEEEECCCC---cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC-CCC
Q 007768 367 IKYWDTETG---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNR 442 (590)
Q Consensus 367 I~vWd~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p-~~~ 442 (590)
|++|++... +.+..+.. +...+.++.++ +.++++++.|+.|++|| .++.+..+..|...|.++.|.| ++.
T Consensus 83 i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIG-HQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp EEEEETTCCTTSCC-CEECC-CSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTT
T ss_pred EEEEEeeecCCCCcccchhh-cccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCC
Confidence 999998765 44444433 22333333332 36899999999999999 6778888889999999999998 899
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007768 443 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
+|++++.|+.|++|| .......+...+...+.+++|+|++. |++++.|+.|++||++++..+. .+.+| ...+
T Consensus 157 ~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~---~~~~~--~~~i 228 (313)
T 3odt_A 157 KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR---TYEGH--ESFV 228 (313)
T ss_dssp EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE---EEECC--SSCE
T ss_pred EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh---hhhcC--CceE
Confidence 999999999999999 44555666555889999999999998 9999999999999998876553 34445 4678
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+| ++. +++++.||.|++||
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEE
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEe
Confidence 899999999 588999999999999999999999999999999999999 454 67899999999996
No 30
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=313.03 Aligned_cols=297 Identities=13% Similarity=0.276 Sum_probs=241.4
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEecCCCCeeEE-EeccCCCCeEEEEEccC---CCEEEE
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCND---GTKFLT 360 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~---Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fspd---g~~l~s 360 (590)
|..+.+.+.+|...|++++|+|++..++++|+. ||.|+||++. .++... ...+|...|.+++|+|+ +.+|++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC-SSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCC-CCcccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 334556778999999999999994456667776 9999999994 554443 34479999999999998 699999
Q ss_pred EecCCeEEEEECCCCc-EEEEecCC-CcceEEEEec---CCCCCcEEEEEECCCeEEEEeCCCCc-eEEEEcCcCC----
Q 007768 361 ASYDKNIKYWDTETGQ-VIRTFSTG-KIPYVVKLNP---DDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLG---- 430 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~-~~~~~~~~-~~~~~~~~~~---~~~~~~~lvsg~~dg~I~iwD~~t~~-~~~~~~~h~~---- 430 (590)
|+.||.|++||+.+++ .+..+..+ ..+.++.+.+ ....+.+|++|+.|+.|++||+++++ .+..+..|.+
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 9999999999999987 66666543 3345555542 12345789999999999999999986 7788876655
Q ss_pred ceeEEE----EeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC---CCCEEEEEEcCCeEEEEEcCC
Q 007768 431 AVNTIT----FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP---NTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 431 ~V~~i~----~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp---~g~~la~~s~dg~I~iwd~~~ 503 (590)
.|.++. |+|++++|++++.|+.|++||++........ .+...+.+++|+| ++.+|++++.||.|++||+++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 789998 6789999999999999999999998875543 5778999999999 999999999999999999987
Q ss_pred ceeecccc--cccCcccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCC-------------------eEEEEEecCC
Q 007768 504 RFQLNKKK--RFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSC-------------------KVFRTLKCHE 561 (590)
Q Consensus 504 ~~~~~~~~--~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~-------------------~~~~~l~~h~ 561 (590)
........ .+.+| ...+.+++|+|+++ +|++|+.||.|++||+.++ +++..+..|.
T Consensus 244 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 244 QHPTKGFASVSEKAH--KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EETTTEEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred CCcccceeeeccCCC--cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 65443322 22255 56789999999999 8999999999999998753 5678889999
Q ss_pred CcEEEEEEcCCCCCEEE-EEeCCCcEEEcC
Q 007768 562 GVCIGCEWHPLEQSKVA-TCGWDGLIKYWD 590 (590)
Q Consensus 562 ~~V~~v~~sp~~~~~l~-s~g~Dg~I~iWD 590 (590)
..|.+++|+| ++.+|+ +++.||.|+|||
T Consensus 322 ~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 322 QPISSLDWSP-DKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp SCEEEEEECS-SSTTEEEEEETTSEEEEEE
T ss_pred CCeeEEEEcC-CCCeEEEEecCCCcEEEEE
Confidence 9999999999 555665 899999999997
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3e-36 Score=306.13 Aligned_cols=249 Identities=20% Similarity=0.353 Sum_probs=220.2
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEE
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
...+++.+|...|++++|+|++++|++++.||.|++||+.++..+..+..+. ...++.|.+++ ++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG---TEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC---CEEEEECCCCEEE
Confidence 4567889999999999999999999999999999999999999998887544 45677788754 6899999999999
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC-CCCEEEEEE
Q 007768 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQS 491 (590)
Q Consensus 413 iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~la~~s 491 (590)
+||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||++....+......|...|.+++|+| ++.+|++++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999888666665667999999999999 678999999
Q ss_pred cCCeEEEEEcCCceeecccccccCcccccceEEEEEcC--CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEE
Q 007768 492 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
.|+.|++||+......... ..++ ...+..+.|+| ++.+|++|+.||.|++||+.+++++..+.+|...|.+++|
T Consensus 161 ~D~~v~iwd~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTL--TTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp TTSEEEEEETTCSSCSEEE--ECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred CCCeEEEEECCCCCcccee--ccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 9999999999765433221 1222 24566788876 7889999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEcC
Q 007768 570 HPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 570 sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+| ++.+|++|+.||+|+|||
T Consensus 237 ~p-~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 237 HP-TLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp CS-SSSEEEEEETTSCEEEEE
T ss_pred CC-CCCEEEEEcCCCeEEEEE
Confidence 99 677999999999999997
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.3e-36 Score=313.34 Aligned_cols=284 Identities=15% Similarity=0.180 Sum_probs=240.2
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe--eEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 007768 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 295 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
+..|..+|++++|+|+ +++|++|+.|+.|+|||+ ..++ .+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 4 ~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEE-ETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred ecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeC-CCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 4569999999999999 899999999999999999 4565 88889999999999999999999999999999999999
Q ss_pred CCCcEEEEec---CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce---EE-EEcCcCCceeEEEEeCCCCEEE
Q 007768 373 ETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---TQ-EYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 373 ~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~---~~-~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
.+++....+. ....+.++.|.+++ .+|++++.|+.|++||++.+.. .. ....|...|.+++|+|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTS---SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCC---CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 9988655543 34455677777653 6899999999999999998762 33 3367899999999999999999
Q ss_pred EEeCCCcEEEEECC------------------CCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007768 446 TSSDDKSLRVWEFG------------------IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 446 s~s~Dg~I~iwdl~------------------~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~ 507 (590)
+++.|+.|++||++ ....+..+. .|...|.+++|+|++.+|++++.|+.|++||+++...+
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 99999999999964 455665554 58889999999999999999999999999999877654
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--CeE--E-----------------------------
Q 007768 508 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKV--F----------------------------- 554 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--~~~--~----------------------------- 554 (590)
. .+..| ...+.+++|+|++++|++| .||.|++|++.+ +.. +
T Consensus 238 ~---~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
T 1k8k_C 238 A---TLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 311 (372)
T ss_dssp E---EEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred E---EEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence 3 33444 4568899999999999888 899999999987 421 0
Q ss_pred -------EEE-ecCCCcEEEEEEcCCCC---CEEEEEeCCCcEEEcC
Q 007768 555 -------RTL-KCHEGVCIGCEWHPLEQ---SKVATCGWDGLIKYWD 590 (590)
Q Consensus 555 -------~~l-~~h~~~V~~v~~sp~~~---~~l~s~g~Dg~I~iWD 590 (590)
..+ .+|...|++++|++.++ .+|+||+.||.|+|||
T Consensus 312 ~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 312 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 223 38999999999886566 8999999999999996
No 33
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.8e-36 Score=305.83 Aligned_cols=272 Identities=18% Similarity=0.318 Sum_probs=240.3
Q ss_pred ceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCee
Q 007768 256 STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC 335 (590)
Q Consensus 256 s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~ 335 (590)
..+..++..|...|.|-..... ..+..++.+|...|.+++|+|+ +.++++|+.|++|+|||+ ..+++
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~-----------~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~-~~~~~ 114 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDER-----------LDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDL-ENGKQ 114 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEE
T ss_pred CCEEEEEcCCCCEEEEECCCCC-----------eeeeeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCE
Confidence 4567888999999999543221 1345678999999999999999 899999999999999999 68889
Q ss_pred EEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEE
Q 007768 336 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 414 (590)
+..+..|...+.+++|+|++++|++++.||.|++|++++++....+... ..+.++++++++ .+|++|+.|+.|++|
T Consensus 115 ~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~lasg~~dg~i~iw 191 (321)
T 3ow8_A 115 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG---KYLASGAIDGIINIF 191 (321)
T ss_dssp EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEEE
T ss_pred EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC---CEEEEEcCCCeEEEE
Confidence 9999999999999999999999999999999999999999988877653 345677777754 689999999999999
Q ss_pred eCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC
Q 007768 415 DMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 415 D~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg 494 (590)
|+++++.+..+.+|..+|.+++|+|++++|++++.|+.|++||++.......+. .|...|.+++|+|++.+|++++.|+
T Consensus 192 d~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp ETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999988877664 5888999999999999999999999
Q ss_pred eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.|++||+.++..+. .+.+| ...|.+++|+|+|++|++++.||.|+|||..
T Consensus 271 ~v~iwd~~~~~~~~---~~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 271 SVKVWDVGTRTCVH---TFFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEETTTTEEEE---EECCC--SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cEEEEeCCCCEEEE---EEcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999998876653 34455 4678899999999999999999999999963
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.8e-36 Score=306.29 Aligned_cols=296 Identities=21% Similarity=0.393 Sum_probs=240.2
Q ss_pred ccCCCCCCcccCCc-ceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007768 242 GNAGGEKGEHVEDK-STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 242 ~~~~~~~~~~~~~~-s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~ 320 (590)
++.+......+.+. ..++.++..|...|.|-...... ....+++++.+|...|++++|+|+ +.+|++|+.
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~ 85 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--------KFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASW 85 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT--------EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEET
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc--------cccccceEEeCCcccEEEEEECCC-CCEEEEEeC
Confidence 44444545555543 35778889999999996532211 113457889999999999999999 999999999
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec-CCCcceEEEEecCCC--
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDD-- 397 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~-~~~~~~~~~~~~~~~-- 397 (590)
|++|+|||+ ..++++..+.+|...|.+++|+|++.+|++|+.|+.|++||+.. .++..+. .......+.+.+...
T Consensus 86 D~~v~~wd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 86 DKTLRLWDV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp TSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC----
T ss_pred CCEEEEEEC-CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCC
Confidence 999999999 68899999999999999999999999999999999999999975 4454443 334455677766532
Q ss_pred -CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcee
Q 007768 398 -KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 476 (590)
Q Consensus 398 -~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~ 476 (590)
...++++++.|+.|++||+++.+....+.+|...|++++|+|++++|++++.|+.|++||+.....+..+. ....|.
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~ 241 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVF 241 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEE
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEE
Confidence 34589999999999999999999999999999999999999999999999999999999999998887775 456899
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc-ccC--cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-FAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 477 ~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~-~~~--~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
+++|+|++.+|++++. +.|++|++........... +.+ ......+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 242 ~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 242 SLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999999999998775 5599999987654433221 111 112456788999999999999999999999998764
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.9e-36 Score=311.31 Aligned_cols=290 Identities=17% Similarity=0.261 Sum_probs=240.2
Q ss_pred EEecCCCCCeeEEEEcCC---CCCEEEEEeCCCcEEEEecCCCCeeEEEecc-----CCCCeEEEEEccC----CCEEEE
Q 007768 293 HTWSGHTKGVSAIRFFPK---YGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-----HSKAVRDISFCND----GTKFLT 360 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~---~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-----h~~~V~~l~fspd----g~~l~s 360 (590)
....+|...|++|+|+|+ +..++++++.++.|+||++ ..+..+..+.. |...|.+++|+|+ +.+|++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYEC-HSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEE-CGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEc-CCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 345599999999999984 4567777777889999999 45666655553 5678999999998 679999
Q ss_pred EecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE---cCcCCceeEEE
Q 007768 361 ASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTIT 436 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~---~~h~~~V~~i~ 436 (590)
|+.||.|++||+.+++.+..+.. ...+.++.|++. .+.+|++|+.||.|++||+++++.+..+ ..|...|.+++
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 99999999999999999988873 445667777762 3378999999999999999999999888 78999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEe---------------------------ecCCCCceeEEEEcCCCCEEEE
Q 007768 437 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI---------------------------SEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~---------------------------~~~~~~~i~~i~~sp~g~~la~ 489 (590)
|+|++.+|++++.||.|++||++.......+ ...|...|.+++|+ +++|++
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 246 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILS 246 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEE
Confidence 9999999999999999999999865432211 12378899999998 779999
Q ss_pred EEcCCeEEEEEcCCceee-----------cccccccCcccccceEEEEEcCC--CCEEEEEcCCCcEEEEeCCCCe----
Q 007768 490 QSLDNQILIYSTRERFQL-----------NKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWKSCK---- 552 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~v~~spd--g~~l~sgs~dg~I~iwd~~t~~---- 552 (590)
++.|+.|++||+.+.... .....+.+| ...+.+++|+|+ +++|++|+.||.|++||+.+++
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 999999999999765431 112333344 345777899999 9999999999999999999875
Q ss_pred EEEEEecC--CCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 553 VFRTLKCH--EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 553 ~~~~l~~h--~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
....+..| ...|.+++|+| ++.+|++++.||.|+|||
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWD 363 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred cceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEE
Confidence 44578877 68999999999 788999999999999997
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-35 Score=303.09 Aligned_cols=283 Identities=22% Similarity=0.323 Sum_probs=242.1
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007768 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~D 321 (590)
++.+......+.+...+..+...|...|.|-. ...+.++++..|...|.+++|+|+ +.+|++|+.|
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~-------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d 118 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS-------------YTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLD 118 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEET-------------TTCCEEEEEECSSSCEEEEEECTT-SSEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEEC-------------CCCCcceEeecCCccEEEEEECCC-CCEEEEEeCC
Confidence 44455555666777778888899999999943 234567889999999999999999 8999999999
Q ss_pred CcEEEEecCCCC---eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCC
Q 007768 322 TKVKIWDVVNSG---KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDD 397 (590)
Q Consensus 322 g~I~iWd~~~~~---~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~ 397 (590)
+.|++|++.... .....+.+|...|.++.|++++. |++++.|+.|++||+.+++++..+..+ ..+.++.+.+++
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~- 196 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT- 196 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-
Confidence 999999994322 46677889999999999998764 899999999999999999999888654 345667777643
Q ss_pred CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCcee
Q 007768 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMP 476 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~ 476 (590)
.++++|+.|+.|++||++++..+..+.+|...|++++|+|++++|++++.|++|++||++....+..+.. .+...|.
T Consensus 197 --~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 197 --RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp --SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred --CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence 6899999999999999999999999999999999999999999999999999999999998887766542 2335799
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 477 ~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
+++|+|++.+|++++.|+.|++||+.+.... ..+.+| ...|.+++|+|+|.+|++|+.||.|+|||
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRA---GVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCCEEEEECCCCeEEEEEcccCcEe---eEeecC--CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999876544 345666 56799999999999999999999999997
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-37 Score=319.58 Aligned_cols=287 Identities=13% Similarity=0.156 Sum_probs=223.5
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
.++.|.++|++++|+|+ +++|++|+.|+.|+||++. .+ +++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 6 ~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQD-GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEE-TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEcc-CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34557789999999999 8999999999999999994 55 77888999999999999999999999999999999999
Q ss_pred CCCCc---EEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc---eEEEEcC-cCCceeEEEEeCCCCE
Q 007768 372 TETGQ---VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQ-HLGAVNTITFVDSNRR 443 (590)
Q Consensus 372 ~~t~~---~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~---~~~~~~~-h~~~V~~i~~~p~~~~ 443 (590)
+.++. ....+. ....+.++.|++++ .+|++|+.|+.|++||+++++ ....+.. |...|++++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNE---DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTS---SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCC---CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 99887 444443 34455667776643 579999999999999999887 4777777 9999999999999999
Q ss_pred EEEEeCCCcEEEEECCC------------------CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007768 444 FVTSSDDKSLRVWEFGI------------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~------------------~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~ 505 (590)
|++++.|+.|++||+.. ...+..+ .|...|.+++|+|++++|++++.|+.|++||+.+..
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 99999999999999852 3334444 688899999999999999999999999999998865
Q ss_pred eec-ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe------------------------------EE
Q 007768 506 QLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK------------------------------VF 554 (590)
Q Consensus 506 ~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~------------------------------~~ 554 (590)
... ....+.+| ...+.+++|+|+|++|++|+.++.+ +|+..... .+
T Consensus 239 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (377)
T 3dwl_C 239 QPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV 315 (377)
T ss_dssp SCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred CcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence 411 13445555 4678899999999999999877665 66654111 00
Q ss_pred ------EEEe----------------cCCCcEEEEEEcCCCCC---EEEEEeCCCcEEEcC
Q 007768 555 ------RTLK----------------CHEGVCIGCEWHPLEQS---KVATCGWDGLIKYWD 590 (590)
Q Consensus 555 ------~~l~----------------~h~~~V~~v~~sp~~~~---~l~s~g~Dg~I~iWD 590 (590)
..+. .|...|+++++.+.++. .|+|||.||.|+|||
T Consensus 316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 1111 28999999998774444 699999999999998
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-36 Score=325.13 Aligned_cols=296 Identities=13% Similarity=0.188 Sum_probs=230.1
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-eeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCe
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 366 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~ 366 (590)
.++.....+|...|+||+|+|.++++||+|+.||.|+|||+.... ..+..+.+|...|++|+|+| ++++|++|+.||+
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 345567789999999999999768899999999999999994322 34455678999999999998 7899999999999
Q ss_pred EEEEECCCCcEEEEecCCC---cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-
Q 007768 367 IKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR- 442 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~- 442 (590)
|+|||++++.......... ...++.+.+++ .+|++|+.||.|++||++. +.+..+..|...|++++|+|++.
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS---RMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT---TEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSS
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCC---CEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCce
Confidence 9999998765544333222 23456677654 6899999999999999975 45667889999999999999876
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe--ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC-cccc
Q 007768 443 RFVTSSDDKSLRVWEFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG-HIVA 519 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~ 519 (590)
+|++++.|+.|+|||++.......+ ...|...|.+++|+|++.+|++++.|+.|+|||+.+............ +...
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence 7889999999999999876543322 235888999999999999999999999999999987654432221111 1011
Q ss_pred cceEEEEEcCCCCEEEEEc------------CCCcEEEEeCCCCeEEEEEe-cCCCcEEEE-EEcCCCCCEEEEEeCCCc
Q 007768 520 GYACQVNFSPDGRFVMSGD------------GEGKCWFWDWKSCKVFRTLK-CHEGVCIGC-EWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs------------~dg~I~iwd~~t~~~~~~l~-~h~~~V~~v-~~sp~~~~~l~s~g~Dg~ 585 (590)
..+..+.|+|++.+++++. .++.|++||..+++++..+. .|...|.++ +|+| ++.+|++|+ |+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~ 422 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYH 422 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCc
Confidence 1223456667666666554 34579999999999998875 677788887 6999 677888776 889
Q ss_pred EEEcC
Q 007768 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|+|||
T Consensus 423 i~iW~ 427 (435)
T 4e54_B 423 ILIWS 427 (435)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99997
No 39
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=303.34 Aligned_cols=301 Identities=17% Similarity=0.266 Sum_probs=251.3
Q ss_pred CccCCcceEEEecCCCCCeeEEEEcCCC--CCEEEEEeCCCcEEEEecCCCCeeE-EEeccCCCCeEEEEEccCCCEEEE
Q 007768 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKY--GHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 284 ~~~~p~~~i~~l~gH~~~V~~l~~sp~~--g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
+...|.+.+..+.+|.+.|++|+|+|+. +.+|++|+.||.|+||++...+..+ ..+.+|...|++++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 3556778889999999999999999995 6999999999999999995435444 788899999999999999999999
Q ss_pred EecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007768 361 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
++.||.|++||+.+++.+........+.++.|.+..+ +.+|++++.|+.|++||+++++.+..+..+. .+.++.+.
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-- 179 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI-- 179 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--
T ss_pred EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--
Confidence 9999999999999999988777777788888854433 3789999999999999999999988887664 56666665
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCceeEEEEcCCCCE----EEEEEcCCeEEEEEcCCceeecccccccC
Q 007768 441 NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNW----LAAQSLDNQILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~----la~~s~dg~I~iwd~~~~~~~~~~~~~~~ 515 (590)
...+++++.++.+++|+++..... ..+.......+.++++.++... +++++.|+.|++|++...........+.+
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 458899999999999999876443 3344455667777777766554 99999999999999987644333445555
Q ss_pred cccc----------cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCc
Q 007768 516 HIVA----------GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 516 ~~~~----------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
|... ..+.+++|+|++++|++|+.||.|++||+.+++++..+..|...|.+++|+| ++.+|++++.|+.
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW 338 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence 5321 1689999999999999999999999999999999999999999999999999 7789999998886
Q ss_pred EEEc
Q 007768 586 IKYW 589 (590)
Q Consensus 586 I~iW 589 (590)
.+.|
T Consensus 339 ~~~~ 342 (368)
T 3mmy_A 339 SKGH 342 (368)
T ss_dssp TTCG
T ss_pred cccc
Confidence 5444
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=320.74 Aligned_cols=308 Identities=13% Similarity=0.205 Sum_probs=251.6
Q ss_pred ccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC---CCeeEEEe
Q 007768 263 ETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCMRTY 339 (590)
Q Consensus 263 ~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---~~~~~~~~ 339 (590)
..|...|.|-....... +++..+ .|...|++++|+|+ +.+|++|+.||.|+||++.. ....+..+
T Consensus 42 ~~d~~v~iw~~~~~~~~----------~~~~~~-~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~ 109 (416)
T 2pm9_A 42 STDSSLELWSLLAADSE----------KPIASL-QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARF 109 (416)
T ss_dssp CCCCCCEEEESSSGGGC----------SCSCCC-CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEEC
T ss_pred CCCCeEEEEEccCCCCC----------cEEEEE-ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhc
Confidence 67888999965443211 122222 58999999999999 89999999999999999943 14588889
Q ss_pred ccCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCc------EEEEe----cCCCcceEEEEecCCCCCcEEEEEECC
Q 007768 340 MGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ------VIRTF----STGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 340 ~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~------~~~~~----~~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
.+|...|++++|+|+ +++|++++.|+.|++||+.+++ ....+ .....+.++.|.+++ ..+|++++.|
T Consensus 110 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d 187 (416)
T 2pm9_A 110 SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--AHVFASAGSS 187 (416)
T ss_dssp CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC--TTEEEEESSS
T ss_pred cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC--CcEEEEEcCC
Confidence 999999999999998 8999999999999999999886 33322 233456677777753 3789999999
Q ss_pred CeEEEEeCCCCceEEEEcCc------CCceeEEEEeCCC-CEEEEEeCCC---cEEEEECCCC-cEEEEeecCCCCceeE
Q 007768 409 KKIVQWDMNTKEITQEYDQH------LGAVNTITFVDSN-RRFVTSSDDK---SLRVWEFGIP-VVIKYISEPHMHSMPS 477 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~~~h------~~~V~~i~~~p~~-~~l~s~s~Dg---~I~iwdl~~~-~~~~~~~~~~~~~i~~ 477 (590)
+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++.|+ .|++||++.. ..+..+...|...|.+
T Consensus 188 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267 (416)
T ss_dssp SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE
T ss_pred CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE
Confidence 99999999999999988876 7899999999997 6899999998 9999999886 3444433268889999
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeEEE
Q 007768 478 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 478 i~~sp-~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
++|+| ++.+|++++.|+.|++||+.+...+. .+.+| ...+.+++|+|++ .+|++++.||.|+|||+.++....
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~---~~~~~--~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS---QFPAR--GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCEEE---EEECS--SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCccce---eecCC--CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 99999 89999999999999999998875543 34445 4567789999999 899999999999999998765322
Q ss_pred EEe-----------------------------------cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 556 TLK-----------------------------------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 556 ~l~-----------------------------------~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
... .|...+.+++|+| ++.+|++++.||.|+|||
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 343 DEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITN 411 (416)
T ss_dssp CC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBC
T ss_pred ccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEE
Confidence 211 1566788999999 788999999999999997
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-34 Score=301.49 Aligned_cols=287 Identities=22% Similarity=0.334 Sum_probs=245.6
Q ss_pred hccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007768 241 KGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~ 320 (590)
+++.+.+....+.+...+..++..|...|.|-. .+.+..+.+..|...|.+++|+|+ +.+|++|+.
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~-------------~~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~ 126 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-------------FTTNKEHAVTMPCTWVMACAYAPS-GCAIACGGL 126 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-------------TTCCEEEEEECSSSCCCEEEECTT-SSEEEEEST
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEEC-------------CCCCcceEEecCCCCEEEEEECCC-CCEEEEeeC
Confidence 345555666667777778889999999999943 234567788899999999999999 999999999
Q ss_pred CCcEEEEecCCC-----CeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC-cceEEEEec
Q 007768 321 DTKVKIWDVVNS-----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNP 394 (590)
Q Consensus 321 Dg~I~iWd~~~~-----~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~ 394 (590)
|+.+++|++... ......+.+|...|.+++|+|++..|++++.|++|++||+++++++..+..+. .+.++.+.+
T Consensus 127 d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp TSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred CCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence 999999998422 13556778899999999999999999999999999999999999999887543 455677776
Q ss_pred CCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCC
Q 007768 395 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMH 473 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~ 473 (590)
... +++|++|+.||.|++||+++++++..+..|...|++++|+|++.+|++++.|++|++||++....+..+.. .+..
T Consensus 207 ~~~-g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 207 SET-GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp CSS-CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred CCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 542 47899999999999999999999999999999999999999999999999999999999998877665543 2345
Q ss_pred ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
.+.+++|+|++.+|++++.|+.|++||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||.|+||+
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~l~~h--~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV---SILFGH--ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE---EEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE---EEEECC--CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 7889999999999999999999999999876554 345566 56799999999999999999999999996
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.2e-36 Score=313.21 Aligned_cols=295 Identities=21% Similarity=0.360 Sum_probs=244.1
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007768 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~D 321 (590)
++.+.+....+.+...+..++..|...|.|-. ...+.++++.+|...|.+++|+|+ +++|++|+.|
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~-------------~~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d 129 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA-------------LTSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLD 129 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEET-------------TTTEEEEEEECCCTTCCCCEECTT-SSEEEECCSS
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEEC-------------CCCccceEEecCCCCEEEEEECCC-CCEEEEeeCC
Confidence 45555666667777778888899999999943 344677899999999999999999 9999999999
Q ss_pred CcEEEEecCCC------CeeEEEeccCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCcEEEEec----CCCcceEE
Q 007768 322 TKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFS----TGKIPYVV 390 (590)
Q Consensus 322 g~I~iWd~~~~------~~~~~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~~~~~~----~~~~~~~~ 390 (590)
+.|+||++... ....+.+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++.+..+. .++...+.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 99999998421 1245668899999999999996 5679999999999999999999988763 23444444
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCC-CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~-t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~ 469 (590)
.+...+...++|++|+.|+.|++||++ .+..+..+.+|.+.|++++|+|++.+|++++.|++|++||++++..+..+..
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 444444445899999999999999998 4578889999999999999999999999999999999999999988776643
Q ss_pred CC------CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccc-cCcccccceEEEEEcCCCCEEEEEcCCCc
Q 007768 470 PH------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVAGYACQVNFSPDGRFVMSGDGEGK 542 (590)
Q Consensus 470 ~~------~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~ 542 (590)
.. ...+.+++|+|++.+|++|+.||.|++||+............ .+| ...|.+++|+|+|++|++|+.||.
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH--EGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC--CCCCCEEEECSSSSEEEEECTTSC
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC--CCceEEEEECCCCCEEEEeeCCCC
Confidence 21 224899999999999999999999999999876655433222 345 567889999999999999999999
Q ss_pred EEEEeCCCCe
Q 007768 543 CWFWDWKSCK 552 (590)
Q Consensus 543 I~iwd~~t~~ 552 (590)
|+||++...+
T Consensus 368 i~iW~~~~~~ 377 (380)
T 3iz6_a 368 LKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSSS
T ss_pred EEEEecCCCc
Confidence 9999987654
No 43
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=289.76 Aligned_cols=291 Identities=16% Similarity=0.305 Sum_probs=236.9
Q ss_pred ccCCcceEEEecC--CCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec--cCCCCeEEEEEccCCCEE
Q 007768 285 CYIPKRLVHTWSG--HTK--GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFCNDGTKF 358 (590)
Q Consensus 285 ~~~p~~~i~~l~g--H~~--~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fspdg~~l 358 (590)
.++|..+.+.|.+ ... .+++|+|+++ ++|++| .|++|+|||+ .++++++.+. +|...|++++|+|++++|
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~--~~lAvg-~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSG--NVLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTT--SEEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCC--CEEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 3566666666653 222 3578999987 367665 5999999999 6788777664 678889999999999999
Q ss_pred EEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEE
Q 007768 359 LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITF 437 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~ 437 (590)
++|+.||.|++||+++++++..+..+. ..+..+.+.+ .++++|+.++.+++|+.... ..+..+.+|...+.++.+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~-~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHS-ARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCcEEEeecCCceeEEEecCcc-ceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 999999999999999999998886543 4445555543 68999999999999999876 566778899999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEE---EEeecCCCCceeEEEEcCCCCEE---EEEEcCCeEEEEEcCCceeecccc
Q 007768 438 VDSNRRFVTSSDDKSLRVWEFGIPVVI---KYISEPHMHSMPSISLHPNTNWL---AAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~~~~~---~~~~~~~~~~i~~i~~sp~g~~l---a~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
.+++++|++++.|+.|++||++++... ......+...|.++.++|.+..+ ++++.++.|++|+...........
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence 999999999999999999999865421 22233577789999999976533 355678999999998765442211
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 512 RFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
....+..+.|+|++..+++++ .||.|+|||+.+++++.++.+|.+.|++++|+| ++.+|+|||.||+|+||
T Consensus 239 ------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 239 ------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLW 311 (318)
T ss_dssp ------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEE
T ss_pred ------ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEE
Confidence 135577899999999887654 799999999999999999999999999999999 77899999999999999
Q ss_pred C
Q 007768 590 D 590 (590)
Q Consensus 590 D 590 (590)
|
T Consensus 312 d 312 (318)
T 4ggc_A 312 R 312 (318)
T ss_dssp C
T ss_pred E
Confidence 7
No 44
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.5e-34 Score=304.31 Aligned_cols=290 Identities=17% Similarity=0.308 Sum_probs=237.8
Q ss_pred cCCcceEEEecCC----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec--cCCCCeEEEEEccCCCEEE
Q 007768 286 YIPKRLVHTWSGH----TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFCNDGTKFL 359 (590)
Q Consensus 286 ~~p~~~i~~l~gH----~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fspdg~~l~ 359 (590)
.+|..+.+.|..- .-.++.|+|+++ ++|++|. |++|+|||+ .+++++..+. +|...|++|+|+|+|++|+
T Consensus 88 ~i~~~p~~~l~ap~~~~d~y~~~l~wS~~--n~lAvgl-d~tV~lWd~-~tg~~~~~~~~~~~~~~V~sv~fspdg~~la 163 (420)
T 4gga_A 88 YIPSLPDRILDAPEIRNDYYLNLVDWSSG--NVLAVAL-DNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLA 163 (420)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTT--SEEEEEE-TTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred ccCCCCceEEECCCCcccccceeEEECCC--CEEEEEe-CCEEEEEEC-CCCCEEEEEEecCCCCcEEEEEECCCCCEEE
Confidence 3444444555432 224788999976 5777765 999999999 6777776654 6778899999999999999
Q ss_pred EEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEe
Q 007768 360 TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 360 s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~ 438 (590)
+|+.||.|+|||+.+++++..+..+ ...+.++.+++ .++++|+.|+.+++||.+.. ..+..+.+|...+..+.|+
T Consensus 164 sgs~Dg~v~iWd~~~~~~~~~~~~h-~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKRLRNMTSH-SARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCeEEEEEcCCCcEEEEEeCC-CCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 9999999999999999999888653 44455555543 68999999999999999875 5667888999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcE---EEEeecCCCCceeEEEEcCCC-CEEEEE--EcCCeEEEEEcCCceeeccccc
Q 007768 439 DSNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNT-NWLAAQ--SLDNQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~g-~~la~~--s~dg~I~iwd~~~~~~~~~~~~ 512 (590)
|++.++++++.|+.|++|++..... .......+...|.+++|+|.+ .+++++ +.|+.|++||+.++.......
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~- 318 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD- 318 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-
Confidence 9999999999999999999976542 112234588899999999975 455554 478999999999876654332
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 513 FAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
. ...++++.|+|+++.|++++ .||.|+|||+.+++++..+.+|.+.|++++|+| ++.+|+|||.||+|+|||
T Consensus 319 --~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 319 --A---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWR 392 (420)
T ss_dssp --C---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEEC
T ss_pred --c---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEE
Confidence 2 35678899999999988765 789999999999999999999999999999999 778999999999999997
No 45
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=300.00 Aligned_cols=288 Identities=15% Similarity=0.262 Sum_probs=220.4
Q ss_pred cccCCcceeecccccccccceeecCCccccccCCCccCC-cceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 007768 250 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIP-KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p-~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd 328 (590)
..+.+...++.... |..+|.|-..... .......+ .........|..+|++++|+|+ ..|++|+.||+|+|||
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWL---FKDPCAAPNEGFCSAGVQTEAGVADLTWVGE--RGILVASDSGAVELWE 109 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEE---ESSGGGTTCGGGCSEEEEESSCEEEEEEETT--TEEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeee---eccccccCCcceeeeeeccCCCEEEEEEeCC--CeEEEEECCCEEEEEe
Confidence 34455555555444 7788888321100 00000011 1122233457788999999998 4788999999999999
Q ss_pred cCCCCeeEE----EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEE
Q 007768 329 VVNSGKCMR----TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 329 ~~~~~~~~~----~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lv 403 (590)
+ ..++.+. .+.+|...|++|+|+|+|++|++|+.|++|++||+.+++++..+..+ ..+.++.|++++ ..+|+
T Consensus 110 ~-~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~--~~~l~ 186 (344)
T 4gqb_B 110 L-DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK--DSVFL 186 (344)
T ss_dssp E-CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC--TTEEE
T ss_pred c-cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC--CCcee
Confidence 9 4554333 34589999999999999999999999999999999999999988753 345566676654 36899
Q ss_pred EEECCCeEEEEeCCCCceEEEEc--CcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEE
Q 007768 404 AGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 404 sg~~dg~I~iwD~~t~~~~~~~~--~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
+|+.|+.|++||+++++....+. .|...+++++|+|+ +++|++|+.||.|++||+++...+..+. .|...|.+++|
T Consensus 187 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~f 265 (344)
T 4gqb_B 187 SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVF 265 (344)
T ss_dssp EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEE
T ss_pred eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEE
Confidence 99999999999999998887764 45567999999985 5688999999999999999988887775 58899999999
Q ss_pred cCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCCeE
Q 007768 481 HPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 481 sp~g-~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~~ 553 (590)
+|++ .+|++++.|+.|+|||+.++... .+.+| ...|.+++|+|+++ +|++|+.||+|++|++.+..+
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~~~----~~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSELF----RSQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCEEE----EECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCcEE----EEcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9997 58999999999999999876543 34566 57799999999986 577999999999999987543
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-34 Score=331.66 Aligned_cols=291 Identities=19% Similarity=0.335 Sum_probs=257.3
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
++.+++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ ..+..+..+.+|...|++++|+|++++|++++.||.|++
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 567889999999999999999 999999999999999999 678899999999999999999999999999999999999
Q ss_pred EECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC-CCCEEEE
Q 007768 370 WDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVT 446 (590)
Q Consensus 370 Wd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p-~~~~l~s 446 (590)
||+.+++.+..+.. ...+.++.|++++ .+|++|+.||.|++||+.++ .....+..|...|.+++|+| ++..|++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCC---CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 99999999988864 3456677787754 57999999999999999987 77788889999999999999 8889999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007768 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp--~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
++.||.|++||+........+...+...+.+++|+| ++.+|++++.||.|++||+.++..+. .+.+| ...+.+
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~~--~~~v~~ 233 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA---TLEGH--MSNVSF 233 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE---EEECC--SSCEEE
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE---EEcCC--CCCEEE
Confidence 999999999999888777777666668999999999 99999999999999999998876543 34445 467889
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++..++++++.|+.+.+|+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 999999999999999999999999999999999999999999999995555445555566677763
No 47
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-34 Score=317.46 Aligned_cols=314 Identities=18% Similarity=0.300 Sum_probs=253.7
Q ss_pred cccCCcce-eecccccccccceeecCCccccccCCCccCCcceEEEecCCCC---CeeEEEEcCCCCCEEEEEeCCCcEE
Q 007768 250 EHVEDKST-FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTK---GVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 250 ~~~~~~s~-~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~---~V~~l~~sp~~g~~L~sgs~Dg~I~ 325 (590)
..+.+... +..+...|...+.|-. ...+++.++.+|.. .|++++|+|+++++|++++.||.|+
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~-------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQG-------------PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEET-------------TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeC-------------CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 34444443 4566677888888842 34567889999999 9999999998678999999999999
Q ss_pred EEecCCCCeeEEEe-c---cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-----CcceEEEEecCC
Q 007768 326 IWDVVNSGKCMRTY-M---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-----KIPYVVKLNPDD 396 (590)
Q Consensus 326 iWd~~~~~~~~~~~-~---~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-----~~~~~~~~~~~~ 396 (590)
+||+ ..++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++.+..+... .....+.+.
T Consensus 233 vwd~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 307 (615)
T 1pgu_A 233 CFDG-KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--- 307 (615)
T ss_dssp EEET-TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE---
T ss_pred EEEC-CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC---
Confidence 9999 678888888 6 899999999999 9999999999999999999999999888765 223334442
Q ss_pred CCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC---------------------------------C--
Q 007768 397 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---------------------------------N-- 441 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~---------------------------------~-- 441 (590)
.+.++++++.++.|++||+.+++.+..+..|...|.+++| |+ +
T Consensus 308 -~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~ 385 (615)
T 1pgu_A 308 -GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 385 (615)
T ss_dssp -ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTC
T ss_pred -CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcE
Confidence 3468999999999999999988888888777666666555 32 3
Q ss_pred -----------------------------------------------------------------------CEEEEEeC-
Q 007768 442 -----------------------------------------------------------------------RRFVTSSD- 449 (590)
Q Consensus 442 -----------------------------------------------------------------------~~l~s~s~- 449 (590)
++|++++.
T Consensus 386 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (615)
T 1pgu_A 386 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE 465 (615)
T ss_dssp CEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecC
Confidence 33444444
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC-cccccceEEEEEc
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG-HIVAGYACQVNFS 528 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~v~~s 528 (590)
|+.|++||+............|...|.+++|+|++++|++++.|+.|++|++.++..+.. +.+ | ...+.+++|+
T Consensus 466 d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~h--~~~v~~~~~s 540 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAFR--TSKINAISWK 540 (615)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCCC--SSCEEEEEEC
T ss_pred CCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE---eecCC--CCceeEEEEc
Confidence 555555555544332223345788899999999999999999999999999988766533 333 4 5678999999
Q ss_pred C----------CCCEEEEEcCCCcEEEEeCCCC-eEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 529 P----------DGRFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 p----------dg~~l~sgs~dg~I~iwd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
| ++++|++|+.||.|++||+.++ +++..+.+|...|.+++|+| ++. |++++.||.|++||
T Consensus 541 p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWN 611 (615)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEE
T ss_pred CccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEe
Confidence 9 9999999999999999999998 88899999999999999999 566 99999999999996
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.7e-35 Score=309.43 Aligned_cols=317 Identities=12% Similarity=0.108 Sum_probs=254.1
Q ss_pred cccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 007768 250 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
..+.+...+..+...|...+.|-...... ...+.+| ..+....|+|+ +.+|++|+.||.|+|||+
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------------~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~ 126 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDG-------------SKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDS 126 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEET-------------TTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECT
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccce-------------eeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeC
Confidence 45566666667777888888885533221 1223345 34445567777 899999999999999999
Q ss_pred CCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECC
Q 007768 330 VNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 330 ~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
..+.+...+.+|...|++++|+|++++|++|+.|+.|++||+.+++.+..+.. ...+.++.|++++ .+|++++.|
T Consensus 127 -~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d 202 (420)
T 3vl1_A 127 -NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG---RNVLSASLD 202 (420)
T ss_dssp -TSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---TEEEEEETT
T ss_pred -CCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---CEEEEEcCC
Confidence 57788888889999999999999999999999999999999999998888864 3456678888754 689999999
Q ss_pred CeEEEEeCCCCceEEEEcC---cCCceeE---------------------EEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 007768 409 KKIVQWDMNTKEITQEYDQ---HLGAVNT---------------------ITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~~~---h~~~V~~---------------------i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
+.|++||+++++.+..+.. |...|.+ ++|+|++++|++++.||.|++||++....+
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999999999988875 3344444 455788999999999999999999999988
Q ss_pred EEeecCCCCceeEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE
Q 007768 465 KYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~-~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
..+...+...+.+++|+|++. +|++++.||.|++||+++.... ...+.++. ...+..+ +++++++|++++.||.|
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~-~~~v~~~-~~~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--VGEFLINE-GTPINNV-YFAAGALFVSSGFDTSI 358 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--SEEEEEST-TSCEEEE-EEETTEEEEEETTTEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--hhhhhccC-CCCceEE-EeCCCCEEEEecCCccE
Confidence 888777888999999999998 9999999999999999876432 22333321 3456666 55688899999999999
Q ss_pred EEEeCCCC---------eEEEEEecCCCcEEEEEEcCCCCC---EEEEEeCCCcEEEcC
Q 007768 544 WFWDWKSC---------KVFRTLKCHEGVCIGCEWHPLEQS---KVATCGWDGLIKYWD 590 (590)
Q Consensus 544 ~iwd~~t~---------~~~~~l~~h~~~V~~v~~sp~~~~---~l~s~g~Dg~I~iWD 590 (590)
++|++... .....+..|.+.|.+++|+| ++. .|+++|.+|.+.+|+
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEE
T ss_pred EEEeccCCCCCccceeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEe
Confidence 99998763 22334667889999999999 555 678888899999995
No 49
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-34 Score=303.38 Aligned_cols=280 Identities=15% Similarity=0.293 Sum_probs=233.8
Q ss_pred EecCCCCCee--EEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc-CCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 294 TWSGHTKGVS--AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 294 ~l~gH~~~V~--~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
...+|...+. ++.|++ ..+++++.|+.|+||++ ..+.....+.. |...|.+++|+|++++|++|+.||.|++|
T Consensus 86 ~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp ECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEET-TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeC-CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 3447776644 455554 45778889999999999 56766666655 89999999999999999999999999999
Q ss_pred ECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCC-CCceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007768 371 DTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 371 d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
|+.+++.+..+..+. .+.++.+ + +.++++|+.||.|++||++ ....+..+..|.+.|.+++|+|++.+|++++
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW--N---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE--E---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ECcCCeEEEEecCCCCceEEEEE--C---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 999999998886432 3334444 2 2689999999999999999 5677888899999999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCC-EEEEEE--cCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007768 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~-~la~~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
.|+.|++||++....+..+. .|...|.+++|+|++. ++++++ .|+.|++||+.++..+.... . ...++++
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~---~~~v~~~ 309 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---A---GSQVTSL 309 (401)
T ss_dssp TTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---C---SSCEEEE
T ss_pred CCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---C---CCcEEEE
Confidence 99999999999988877764 5888999999999764 556654 69999999998876554332 1 3568899
Q ss_pred EEcCCCCEEEE--EcCCCcEEEEeCCCCeEEE--EEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 526 NFSPDGRFVMS--GDGEGKCWFWDWKSCKVFR--TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 526 ~~spdg~~l~s--gs~dg~I~iwd~~t~~~~~--~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+|+|++++|++ |+.||.|++||+.+++... .+.+|...|.+++|+| ++.+|++++.||.|++||
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFWR 377 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEEEE
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEE
Confidence 99999999999 5589999999999966554 4678999999999999 788999999999999996
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-34 Score=300.48 Aligned_cols=281 Identities=14% Similarity=0.249 Sum_probs=238.4
Q ss_pred cCCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEec----CCCCe-----eEEEecc----------CCCCeEEEEEccCC
Q 007768 296 SGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDV----VNSGK-----CMRTYMG----------HSKAVRDISFCNDG 355 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~----~~~~~-----~~~~~~~----------h~~~V~~l~fspdg 355 (590)
..|.+.|++++|+|+ +. +|++|+.||.|+||++ ..... ....+.. |...|++++|+|++
T Consensus 42 ~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 356699999999999 77 9999999999999999 53331 3444443 68899999999999
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCc---
Q 007768 356 TKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA--- 431 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~--- 431 (590)
++|++++.||.|++|| .+++.+..+.. ...+.++.|.+++ .+|++++.|+.|++||+.+++.+..+..+...
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG---THIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS---SEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC---CEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 9999999999999999 66777777764 3455677777654 68999999999999999999999999888777
Q ss_pred ------------eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEE
Q 007768 432 ------------VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 432 ------------V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iw 499 (590)
+.++.|++++ .+++++.++.|++||+.....+..+. .|...|.+++|+|++.+|++++.|+.|++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp ---------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 9999999875 68999999999999999887776664 588899999999999999999999999999
Q ss_pred EcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEE
Q 007768 500 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
|+.+..... .+.+| ...+.+++|+|++ +|++++.||.|++||+.+++++..+..|...|.+++|+| ++.+|++
T Consensus 275 d~~~~~~~~---~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~ 347 (425)
T 1r5m_A 275 HGGNGNSQN---CFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAV 347 (425)
T ss_dssp CSSSBSCSE---EECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEE
T ss_pred ECCCCccce---EecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEE
Confidence 998765443 33444 4678899999999 999999999999999999999999999999999999999 6789999
Q ss_pred EeCCCcEEEcC
Q 007768 580 CGWDGLIKYWD 590 (590)
Q Consensus 580 ~g~Dg~I~iWD 590 (590)
++.||.|++||
T Consensus 348 ~~~dg~i~i~~ 358 (425)
T 1r5m_A 348 AFMDGQVNVYD 358 (425)
T ss_dssp EETTSCEEEEE
T ss_pred EECCCeEEEEE
Confidence 99999999997
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.5e-34 Score=304.91 Aligned_cols=301 Identities=19% Similarity=0.354 Sum_probs=251.9
Q ss_pred eecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE
Q 007768 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 337 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~ 337 (590)
+..++..|..+|.|-. ...+++.++.+|.+.|++++|+|+ + +|++|+.||+|++||+ ..++++.
T Consensus 134 ~l~sgs~dg~i~vwd~-------------~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~-~~~~~~~ 197 (464)
T 3v7d_B 134 YVITGADDKMIRVYDS-------------INKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDI-KKGCCTH 197 (464)
T ss_dssp EEEEEETTSCEEEEET-------------TTTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEET-TTTEEEE
T ss_pred EEEEEcCCCcEEEEEC-------------CCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEEC-CCCcEEE
Confidence 4566677778888743 345678899999999999999998 4 9999999999999999 6888999
Q ss_pred EeccCCCCeEEEEEcc--CCCEEEEEecCCeEEEEECCCCcEEEE----------------------ecCCCcceEEEEe
Q 007768 338 TYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRT----------------------FSTGKIPYVVKLN 393 (590)
Q Consensus 338 ~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~~~~~~----------------------~~~~~~~~~~~~~ 393 (590)
.+.+|...|.+++|++ ++.+|++|+.||.|++||+.++..... ...++...+.++.
T Consensus 198 ~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 277 (464)
T 3v7d_B 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277 (464)
T ss_dssp EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE
T ss_pred EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc
Confidence 9999999999999994 778999999999999999988764321 2233444455555
Q ss_pred cCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC
Q 007768 394 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
+++ .++++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||++++..+..+. .|..
T Consensus 278 ~~~---~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~ 353 (464)
T 3v7d_B 278 GHG---NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTA 353 (464)
T ss_dssp EET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSS
T ss_pred CCC---CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCC
Confidence 543 689999999999999999999999999999999999999999999999999999999999998887775 5888
Q ss_pred ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~ 553 (590)
.|.++.++ +.+|++++.||.|++||+.+........ + ...+..++|++++++|++|+ ||.|++||+.++++
T Consensus 354 ~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~--~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 354 LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH----H--TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE----C--TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec----C--CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 99999997 5899999999999999998765432221 1 23455689999999999998 89999999999999
Q ss_pred EEE-EecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 554 FRT-LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 554 ~~~-l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+.. +..|...|.+++|+ +..++++++.||.+.+|
T Consensus 425 ~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 425 VHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEE
T ss_pred EehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEE
Confidence 886 56788999999997 35567777778876654
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.6e-34 Score=294.34 Aligned_cols=284 Identities=16% Similarity=0.293 Sum_probs=225.6
Q ss_pred cceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe
Q 007768 255 KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK 334 (590)
Q Consensus 255 ~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~ 334 (590)
...++.++..|..+|.|-...... ......+..++.+|...|++++|+|+ +.+|++|+.|++|+|||+ ..++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~------~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~-~~~~ 109 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQ------NGYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDL-RTGT 109 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCC------SSBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEET-TSSC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCc------ccccccccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCc
Confidence 556778899999999996543221 01123456789999999999999999 899999999999999999 6788
Q ss_pred eEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEe---cCCCcceEEEEecCCCC-------CcEEEE
Q 007768 335 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF---STGKIPYVVKLNPDDDK-------QNILLA 404 (590)
Q Consensus 335 ~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~lvs 404 (590)
++..+.+|...|.+++|+|++++|++++.|+.|++||+......... .......++.+.+.... ..+|++
T Consensus 110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s 189 (343)
T 2xzm_R 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189 (343)
T ss_dssp EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEE
Confidence 99999999999999999999999999999999999999844333222 12334567777765421 268999
Q ss_pred EECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEeecCCCCceeEEEEcCC
Q 007768 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 405 g~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
++.|+.|++|| ........+..|...|++++|+|++++|++++.|+.|++||+.. ......+ .+...|.+++|+|+
T Consensus 190 ~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~ 266 (343)
T 2xzm_R 190 VGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF--DAGSTINQIAFNPK 266 (343)
T ss_dssp EETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE--ECSSCEEEEEECSS
T ss_pred EcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee--cCCCcEEEEEECCC
Confidence 99999999999 45667778889999999999999999999999999999999943 3333333 24567999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeec--ccc--------cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007768 484 TNWLAAQSLDNQILIYSTRERFQLN--KKK--------RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 484 g~~la~~s~dg~I~iwd~~~~~~~~--~~~--------~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~ 552 (590)
+.+++++ .|+.|++|++.+..... .+. ...+| ...+.+++|+|+|++|++|+.||.|++|++.++.
T Consensus 267 ~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 267 LQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK--NPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS--CCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC--CCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 9887754 58889999997654332 111 11133 4568899999999999999999999999987653
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=310.43 Aligned_cols=284 Identities=15% Similarity=0.304 Sum_probs=239.9
Q ss_pred CCCeeEEEEcCCCCCEEEEE----------eCCCcEEEEecCCCCe---eEEEeccCCCCeEEEEEccCCCEEEEEecCC
Q 007768 299 TKGVSAIRFFPKYGHLILSA----------GMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sg----------s~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
...|.+++|+|++..+|++| +.|+.|+||++. .+. ++..+ .|...|.+++|+|++.+|++++.||
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~-~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESS-SGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEcc-CCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 35689999999944599999 899999999994 443 33333 5889999999999999999999999
Q ss_pred eEEEEECCC----CcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc------eEEE---EcCcCCc
Q 007768 366 NIKYWDTET----GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------ITQE---YDQHLGA 431 (590)
Q Consensus 366 ~I~vWd~~t----~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~------~~~~---~~~h~~~ 431 (590)
.|++||+.+ .+.+..+.. ...+.++.|++++ ..+|++++.|+.|++||+++++ .... +..|...
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 999999988 346666653 3456678887752 3689999999999999999886 3322 3678999
Q ss_pred eeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCC-----CCceeEEEEcCCC-CEEEEEEcCC---eEEEEEc
Q 007768 432 VNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-----MHSMPSISLHPNT-NWLAAQSLDN---QILIYST 501 (590)
Q Consensus 432 V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-----~~~i~~i~~sp~g-~~la~~s~dg---~I~iwd~ 501 (590)
|.+++|+|+ +.+|++++.|+.|++||++....+..+.... ...+.+++|+|++ .+|++++.|+ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999999 7899999999999999999998887776432 7789999999997 6899999998 9999999
Q ss_pred CCceeeccccccc-CcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEE
Q 007768 502 RERFQLNKKKRFA-GHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 502 ~~~~~~~~~~~~~-~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
++.... ...+. +| ...+.+++|+| ++++|++++.||.|++||+.+++++..+..|...|.+++|+|++..+|++
T Consensus 248 ~~~~~~--~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 248 RNANTP--LQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp TSTTSC--SBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred CCCCCC--cEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE
Confidence 875322 23344 45 56789999999 99999999999999999999999999999999999999999955589999
Q ss_pred EeCCCcEEEcC
Q 007768 580 CGWDGLIKYWD 590 (590)
Q Consensus 580 ~g~Dg~I~iWD 590 (590)
++.||.|+|||
T Consensus 324 ~~~d~~i~iw~ 334 (416)
T 2pm9_A 324 ASFDNKIEVQT 334 (416)
T ss_dssp CCSSSEEEEEE
T ss_pred EecCCcEEEEE
Confidence 99999999996
No 54
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-34 Score=297.41 Aligned_cols=282 Identities=12% Similarity=0.122 Sum_probs=236.1
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC--eeEEEeccCCCCeEEEEEccCCC-EEEEEecCCeEEE
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKY 369 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~v 369 (590)
....+|.+.|++++|+|+ +.+|++|+.||.|+||++.... .....+.+|...|.+++|+|+++ +|++|+.||.|++
T Consensus 5 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp ECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred ecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 345689999999999998 8999999999999999994332 13556668999999999999999 9999999999999
Q ss_pred EEC-CCCcEEEEec--CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC---------CceEEEEcCcCCceeEEEE
Q 007768 370 WDT-ETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---------KEITQEYDQHLGAVNTITF 437 (590)
Q Consensus 370 Wd~-~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t---------~~~~~~~~~h~~~V~~i~~ 437 (590)
||+ .+++...... ....+.++.+.+ ..+|++++.|+.|++||+++ ++.+..+. |...|.+++|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 84 VDLIGSPSFQALTNNEANLGICRICKYG----DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred EEeccCCceEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 999 8887744433 445566777776 36899999999999999988 76666665 8899999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCC-CcE-EEEeecCCCCceeEEEEcC-CCCEEEEEEcCCeEEEEEcCCce---eecccc
Q 007768 438 VDSNRRFVTSSDDKSLRVWEFGI-PVV-IKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERF---QLNKKK 511 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~-~~~-~~~~~~~~~~~i~~i~~sp-~g~~la~~s~dg~I~iwd~~~~~---~~~~~~ 511 (590)
++++ |++++.|+.|++||++. ... .......+...+.+++|+| ++.+|++++.||.|++|++.... ......
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9877 99999999999999987 442 3334446788999999999 99999999999999999997650 012223
Q ss_pred cccCccc-------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC-CCcEEEEEEcCCCCCEEEEEeCC
Q 007768 512 RFAGHIV-------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 512 ~~~~~~~-------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
.+..|.. ...+.+++|+|++++|++|+.||.|++||+.+++++..+..| ...|.+++ | ++.+|++++.|
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s~D 313 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDNILCLATSD 313 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSSEEEEEEEC
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCCeEEEEecC
Confidence 3444422 347899999999999999999999999999999999999998 99999999 7 77899999999
Q ss_pred Cc
Q 007768 584 GL 585 (590)
Q Consensus 584 g~ 585 (590)
|.
T Consensus 314 g~ 315 (342)
T 1yfq_A 314 DT 315 (342)
T ss_dssp TH
T ss_pred Cc
Confidence 98
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4e-33 Score=298.05 Aligned_cols=299 Identities=23% Similarity=0.400 Sum_probs=255.2
Q ss_pred eecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE
Q 007768 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 337 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~ 337 (590)
+..++..|...+.|-. ...+++.++.+|.+.|.+++|+ +.+|++|+.||+|++||+ ..++++.
T Consensus 131 ~l~sg~~dg~i~vwd~-------------~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~-~~~~~~~ 193 (445)
T 2ovr_B 131 RIVSGSDDNTLKVWSA-------------VTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNA-ETGECIH 193 (445)
T ss_dssp EEEEEETTSCEEEEET-------------TTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEEEE
T ss_pred EEEEEECCCcEEEEEC-------------CCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEEC-CcCcEEE
Confidence 4455666777777743 3456788999999999999997 569999999999999999 6889999
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeC
Q 007768 338 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 416 (590)
.+.+|...|.++.|+ +..|++|+.||.|++||+.+++.+..+..+. .+.++.+ + +.++++|+.||.|++||+
T Consensus 194 ~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~~dg~i~iwd~ 266 (445)
T 2ovr_B 194 TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D---GRRVVSGAYDFMVKVWDP 266 (445)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C---SSCEEEEETTSCEEEEEG
T ss_pred EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C---CCEEEEEcCCCEEEEEEC
Confidence 999999999999995 6789999999999999999999988886543 2334444 3 367999999999999999
Q ss_pred CCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeE
Q 007768 417 NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496 (590)
Q Consensus 417 ~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I 496 (590)
++++.+..+..|...|.++.| ++.+|++++.|+.|++||++++..+..+. .|...+.++.+ ++++|++++.||.|
T Consensus 267 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i 341 (445)
T 2ovr_B 267 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADSTV 341 (445)
T ss_dssp GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSCE
T ss_pred CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCeE
Confidence 999999999999999999999 78899999999999999999998887775 47777877776 46799999999999
Q ss_pred EEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE-----ecCCCcEEEEEEcC
Q 007768 497 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-----KCHEGVCIGCEWHP 571 (590)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l-----~~h~~~V~~v~~sp 571 (590)
++||+.++..+........| ...+.+++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|.+++|+|
T Consensus 342 ~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 342 KIWDIKTGQCLQTLQGPNKH--QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 417 (445)
T ss_dssp EEEETTTCCEEEEECSTTSC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred EEEECCCCcEEEEEccCCCC--CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC
Confidence 99999887665444433334 5678888885 689999999999999999999999988 46888999999999
Q ss_pred CCCCEEEEEeCCCc----EEEcC
Q 007768 572 LEQSKVATCGWDGL----IKYWD 590 (590)
Q Consensus 572 ~~~~~l~s~g~Dg~----I~iWD 590 (590)
++.+|++|+.||+ |.|||
T Consensus 418 -~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 418 -TKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp -SEEEEEEECSSSSSCCEEEEEE
T ss_pred -CEEEEEEcccCCCCccEEEEEE
Confidence 7889999999998 99996
No 56
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-33 Score=296.61 Aligned_cols=285 Identities=19% Similarity=0.358 Sum_probs=232.5
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecC------------------CCCCeeE
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSG------------------HTKGVSA 304 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~g------------------H~~~V~~ 304 (590)
+.+......+.+...+..++. +...+.|..... +++..+.+ +...|++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 128 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG-------------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC-------------CEEEEECC-----------------CCCCBEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC-------------CEEEEecCccccccccccccccccCCCceeEEE
Confidence 444455556666666666543 567777754322 22233333 3345999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC
Q 007768 305 IRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 305 l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~ 384 (590)
++|+|+ +++|++|+.|+.|+|||+ ..++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++++...+...
T Consensus 129 v~~s~d-g~~l~s~~~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 206 (393)
T 1erj_A 129 VCFSPD-GKFLATGAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206 (393)
T ss_dssp EEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEECCC-CCEEEEEcCCCeEEEEEC-CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence 999999 999999999999999999 678899999999999999999999999999999999999999999999888877
Q ss_pred CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007768 385 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-------~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
.....+.+.+. .+.+|++|+.|+.|++||++++..+..+ .+|...|.+++|+|++++|++++.|+.|++||
T Consensus 207 ~~v~~~~~~~~--~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 207 DGVTTVAVSPG--DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp SCEEEEEECST--TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEECC--CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 77777888773 3378999999999999999999887776 57899999999999999999999999999999
Q ss_pred CCCCc------------EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007768 458 FGIPV------------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 458 l~~~~------------~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
++... +...+ ..|...|.+++|+|++.+|++++.|+.|++||+.++..+ ..+.+| ...|.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~---~~l~~h--~~~v~~v 358 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL---LMLQGH--RNSVISV 358 (393)
T ss_dssp C---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE---EEEECC--SSCEEEE
T ss_pred CCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE---EEECCC--CCCEEEE
Confidence 97532 22222 358888999999999999999999999999999887654 345566 4668889
Q ss_pred EEcC------CCCEEEEEcCCCcEEEEeCCCC
Q 007768 526 NFSP------DGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 526 ~~sp------dg~~l~sgs~dg~I~iwd~~t~ 551 (590)
+|++ ++++|++|+.||.|+||++...
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9876 6899999999999999997543
No 57
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8e-34 Score=287.20 Aligned_cols=255 Identities=20% Similarity=0.346 Sum_probs=207.3
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCeeEEEeccCCCCeEEEEEcc--CCCEEEEEecCCeEE
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIK 368 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~ 368 (590)
+..+.+|.+.|++++|+|+ +++|++|+.|++|+||++.. ..+++.++.+|...|.+++|++ ++++|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4567899999999999999 99999999999999999943 3467889999999999999986 489999999999999
Q ss_pred EEECCCCc--EEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCC---
Q 007768 369 YWDTETGQ--VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDS--- 440 (590)
Q Consensus 369 vWd~~t~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~--~~~~~~~h~~~V~~i~~~p~--- 440 (590)
|||+.+++ .+..+. ....+.++.|.|+. .+.+|++|+.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCC-CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 99999874 334443 23455677777752 13689999999999999998763 24567789999999999997
Q ss_pred ----------CCEEEEEeCCCcEEEEECCCCc----EEEEeecCCCCceeEEEEcCCC---CEEEEEEcCCeEEEEEcCC
Q 007768 441 ----------NRRFVTSSDDKSLRVWEFGIPV----VIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 441 ----------~~~l~s~s~Dg~I~iwdl~~~~----~~~~~~~~~~~~i~~i~~sp~g---~~la~~s~dg~I~iwd~~~ 503 (590)
+++|++++.|++|++||++... ....+ ..|...|.+++|+|++ .+|++++.|+.|++||+..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999997754 33333 4688999999999984 8999999999999999976
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 504 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.........+..+.....+.+++|+|+|++|++++.||.|+||+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 4211111112111225678899999999999999999999999976
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-33 Score=338.68 Aligned_cols=291 Identities=21% Similarity=0.322 Sum_probs=258.8
Q ss_pred eEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 291 ~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
....+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ .++..+..+.+|...|.+++|+|++++|++|+.||.|+||
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 34578899999999999999 999999999999999999 6888999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEecCCC-cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 371 DTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 371 d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
|+.+++++..+..+. .+.++.|.+.. ...++++|+.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKS-NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS-SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCC-CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 999999999886543 45567777653 3468999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecC------------CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcc
Q 007768 450 DKSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
||.|++||+........+... ....+.+++|+|++.++++++ ++.|.+|++.+....... ..+|
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~--~~~~- 839 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEI--HTGH- 839 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEE--ECSS-
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEE--cCCC-
Confidence 999999999988776665421 233688999999999999987 789999999887655332 2234
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
...+.+++|+|+++++++|+.+|.|++||+.++..+..+.+|.+.|.+++|+| ++.+|++++.||.|++||
T Consensus 840 -~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 840 -HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp -SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred -CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEE
Confidence 46688899999999999999999999999999999999999999999999999 778999999999999996
No 59
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=292.45 Aligned_cols=295 Identities=19% Similarity=0.309 Sum_probs=230.0
Q ss_pred CCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 247 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 326 (590)
Q Consensus 247 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~i 326 (590)
.....+.+...++.++..|..+|.|-...... ........+|...|++|+|+|+ +++|++|+.|++|+|
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------ICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDATTCI 87 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------EEEEEECSSCSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------eeeeeeccccCCcEEEEEECCC-CCEEEEEECCCcEEE
Confidence 34456777778888999999999995432110 0011233689999999999999 899999999999999
Q ss_pred EecCCCC-eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc---EEEEecC-CCcceEEEEecCCCCCcE
Q 007768 327 WDVVNSG-KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFST-GKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 327 Wd~~~~~-~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ 401 (590)
|++.... .++..+.+|...|.+++|+|++++|++|+.|+.|++||+.++. ++..+.. ...+..+.|+|++ .+
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~ 164 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ---EL 164 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS---SC
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC---CE
Confidence 9984322 5678899999999999999999999999999999999998764 3344433 3345567777754 57
Q ss_pred EEEEECCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC---------------cEE
Q 007768 402 LLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP---------------VVI 464 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t~~--~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~---------------~~~ 464 (590)
|++|+.|+.|++||++++. +...+.+|...|.+++|+|++++|++++.|++|+||+...+ .++
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 9999999999999998875 45678899999999999999999999999999999996322 223
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc------cccccCcccccceEEEEEcCCC-CEEEEE
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK------KKRFAGHIVAGYACQVNFSPDG-RFVMSG 537 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~------~~~~~~~~~~~~v~~v~~spdg-~~l~sg 537 (590)
..+...|...|.+++|+|++..|++++.|+.|++|+......... .....+| ...|.+++|+|++ .+|++|
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH--SQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS--SSCEEEEEECSSSTTEEEEE
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc--cCcEeEeEEeCCCceEEEEc
Confidence 344444788899999999999999999999999999865422110 1122345 5679999999998 599999
Q ss_pred cCCCcEEEEeCCCCeEEEEE
Q 007768 538 DGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 538 s~dg~I~iwd~~t~~~~~~l 557 (590)
+.||.|+||++.+.+....+
T Consensus 323 s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 323 SDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp ETTSCEEEEEECC-------
T ss_pred CCCCcEEEEEecCCCCcccc
Confidence 99999999999988766544
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.2e-33 Score=297.25 Aligned_cols=281 Identities=16% Similarity=0.325 Sum_probs=240.8
Q ss_pred eEEEecCCCCCe-eEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 291 LVHTWSGHTKGV-SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 291 ~i~~l~gH~~~V-~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
...++.+|...| +|+.+. +++|++|+.||+|++||+ ..++++..+.+|...|.+++|++++ +|++|+.||.|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~-~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred ceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEEC-CCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 456889999885 666663 679999999999999999 6889999999999999999999987 9999999999999
Q ss_pred EECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce-----------------------EEEE
Q 007768 370 WDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----------------------TQEY 425 (590)
Q Consensus 370 Wd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-----------------------~~~~ 425 (590)
||+.+++++..+.. ...+.++.+.+.+ ...++++|+.|+.|++||++++.. +..+
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 99999999988874 3455677777643 347899999999999999987652 5567
Q ss_pred cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007768 426 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 426 ~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~ 505 (590)
.+|...|.++ ++++++|++++.|+.|++||+++...+..+. .|...|.+++|+|++.+|++++.|+.|++||+.++.
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 7888888887 5678899999999999999999988887774 588899999999999999999999999999998876
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCc
Q 007768 506 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 506 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
.+. .+.+| ...+.++.|+ +.+|++|+.||.|++||+.++.....+. |...+..++|++ ++.+|++++ ||.
T Consensus 344 ~~~---~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~ 413 (464)
T 3v7d_B 344 LMY---TLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQ 413 (464)
T ss_dssp EEE---EECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTE
T ss_pred EEE---EEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCe
Confidence 553 44555 4668888887 6899999999999999999988776664 666778889999 677899888 999
Q ss_pred EEEcC
Q 007768 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|+|||
T Consensus 414 i~iwd 418 (464)
T 3v7d_B 414 FNIYN 418 (464)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 61
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-34 Score=301.47 Aligned_cols=281 Identities=12% Similarity=0.102 Sum_probs=218.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCC-------cEEEEecCCCCe---------eEEEeccCCCCeEEEEEccCCCEEEEE-
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDT-------KVKIWDVVNSGK---------CMRTYMGHSKAVRDISFCNDGTKFLTA- 361 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg-------~I~iWd~~~~~~---------~~~~~~~h~~~V~~l~fspdg~~l~s~- 361 (590)
.-||+|++|+|+ +++|++|+.+. .|+||++..... ....+.+|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 458999999999 89999998643 599999843321 113466888899988775 5566665
Q ss_pred ----------ecCCeEEEEECCCCcEEE----EecC------CCcceEEEEecCCCCCcEEE--EEECCCeEEEEeCCCC
Q 007768 362 ----------SYDKNIKYWDTETGQVIR----TFST------GKIPYVVKLNPDDDKQNILL--AGMSDKKIVQWDMNTK 419 (590)
Q Consensus 362 ----------s~Dg~I~vWd~~t~~~~~----~~~~------~~~~~~~~~~~~~~~~~~lv--sg~~dg~I~iwD~~t~ 419 (590)
+.|+.|++|++.+..... .... .....+++|+|++ .+++ +++.|+.|++||+.++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg---~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG---TVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS---SCEEEEESCSSCEEEEEETTTT
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC---CEEEEEECCCCCEEEEeECCCC
Confidence 357789999987653221 1111 1224578888865 3444 3446899999999999
Q ss_pred ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE-EeecCCCCceeEEEEcCCCCEEEEEEcCC----
Q 007768 420 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK-YISEPHMHSMPSISLHPNTNWLAAQSLDN---- 494 (590)
Q Consensus 420 ~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~-~~~~~~~~~i~~i~~sp~g~~la~~s~dg---- 494 (590)
+++..+. |.+.|.+++|+|++++|++++.+ .+++|+..++..+. .....|...|.+++|+|++.++++++.++
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 9988885 77889999999999999999865 56667766665544 34446778899999999999999999887
Q ss_pred eEEEEEcCCceee-cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE-ecCCCcEEEEEEcCC
Q 007768 495 QILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPL 572 (590)
Q Consensus 495 ~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l-~~h~~~V~~v~~sp~ 572 (590)
.+++|++...... .....+.+| ...|++++|||+|++|++|+.|+.|+|||+.+++++..+ .+|...|++++|+|
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~--~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp- 322 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNR--FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP- 322 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESS--CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-
T ss_pred EEeecccccceecceeeeeecCC--CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-
Confidence 6888888654322 223344555 467899999999999999999999999999999999886 68999999999999
Q ss_pred CCCEEEEEeCCCcEEEcC
Q 007768 573 EQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 573 ~~~~l~s~g~Dg~I~iWD 590 (590)
++.+|||||.|++|+|||
T Consensus 323 dg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIK 340 (365)
T ss_dssp TSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 788999999999999996
No 62
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=289.74 Aligned_cols=285 Identities=19% Similarity=0.294 Sum_probs=216.7
Q ss_pred CCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEe-cC-CCCCeeEEEEcCCCCCEEEEEeCCCc
Q 007768 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW-SG-HTKGVSAIRFFPKYGHLILSAGMDTK 323 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l-~g-H~~~V~~l~~sp~~g~~L~sgs~Dg~ 323 (590)
......+.+. +..+...|..+|.|-.... ...++.++ .+ |...|++|+|+|+ +.+|++|+.|++
T Consensus 16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~-----------~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~ 81 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYD-----------DFTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEETT--EEEEEESSSCEEEEECSSS-----------CCEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSC
T ss_pred ceeeeccCCC--EEEEEcCCCEEEEEEecCC-----------CeEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCc
Confidence 3333344443 6678888999999955321 12345566 45 9999999999999 899999999999
Q ss_pred EEEEecCC------CCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC----cEEEEecCC-CcceEEEE
Q 007768 324 VKIWDVVN------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG----QVIRTFSTG-KIPYVVKL 392 (590)
Q Consensus 324 I~iWd~~~------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~----~~~~~~~~~-~~~~~~~~ 392 (590)
|+||++.. ...++..+.+|...|.+++|+|++++|++|+.|+.|++||+... +++..+..+ ..+.++.|
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 99999832 23567888999999999999999999999999999999999432 455555443 34567777
Q ss_pred ecCCCCCcEEEEEECCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCC-------
Q 007768 393 NPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIP------- 461 (590)
Q Consensus 393 ~~~~~~~~~lvsg~~dg~I~iwD~~t~--~~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~------- 461 (590)
+|++ .+|++|+.|+.|++||+.++ +++..+.+|.+.|.++.|+|+ +.+|++++.|++|++||+...
T Consensus 162 ~p~~---~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 162 HPSE---ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp CSSS---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred CCCC---CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 7754 68999999999999999876 678889999999999999998 678999999999999998653
Q ss_pred -cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc-ceEEEEEcC--CCCEEEEE
Q 007768 462 -VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-YACQVNFSP--DGRFVMSG 537 (590)
Q Consensus 462 -~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp--dg~~l~sg 537 (590)
.....+...|...|.+++|++++ +|++++.||.|++|+..++..........+| .. .+.+++|+| ++++|++|
T Consensus 239 ~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 239 WVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH--GVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp EEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT--TTSCEEEEEEC-----CCEEEE
T ss_pred eEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc--ccceEEEEEEecCCCceEEEEe
Confidence 23334433488899999999765 8999999999999998765321111222344 23 688999999 78999999
Q ss_pred cCCCcEEEEeCCC
Q 007768 538 DGEGKCWFWDWKS 550 (590)
Q Consensus 538 s~dg~I~iwd~~t 550 (590)
+.||.|+|||+..
T Consensus 316 s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 316 GDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSEEEEEEC--
T ss_pred cCCCcEEEEEecc
Confidence 9999999999864
No 63
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-33 Score=288.07 Aligned_cols=278 Identities=15% Similarity=0.258 Sum_probs=235.9
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
|.++|.+++|+|+ |.+++++..++.+.+|........+ ...+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 5678999999999 8999988888888777763333333 4447999999999999999999999 99999999987753
Q ss_pred EE---Ee---cCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 378 IR---TF---STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 378 ~~---~~---~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~--~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
.. .+ .....+.++.+.+++ .+|++++.|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDG---CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTS---SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eeeeecccccCCCCcEEEEEEcCCC---CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 32 22 234455667777643 689999999999999999887 66778889999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|+.|++||+++...+..+. .|...+.+++|+|++++|++++.|+.|++||+++........ ....+.+++|+|
T Consensus 162 dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~v~~~~~s~ 234 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD------FTSQIFSLGYCP 234 (337)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECT
T ss_pred CCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec------CCCceEEEEECC
Confidence 9999999999988877764 488899999999999999999999999999998876554322 245688899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++++|++++.+|.|++||+.+++.. .+..|...|.+++|+| ++.+|++++.||.|++||
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECC-CCCEEEEecCCCcEEEEE
Confidence 9999999999999999999988764 5778999999999999 778999999999999996
No 64
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=324.87 Aligned_cols=201 Identities=13% Similarity=0.148 Sum_probs=163.0
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg 322 (590)
+.......++.+...+++++..|..+|.|-... .+++.. ..|...|.+|+|+| +.+|++++.|+
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-------------~~~~~~-~~~~~~V~~l~fsp--g~~L~S~s~D~ 79 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-------------VEVVIK-LEDRSAIKEMRFVK--GIYLVVINAKD 79 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTT-------------CEEEEE-CSSCCCEEEEEEET--TTEEEEEETTC
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------cEEEEE-cCCCCCEEEEEEcC--CCEEEEEECcC
Confidence 334455566777778888999999999994321 122333 35889999999999 46999999999
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE-e----------c-CCCcceEE
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-F----------S-TGKIPYVV 390 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~-~----------~-~~~~~~~~ 390 (590)
+|+|||+ ..++++..+. |...|++++|+|++++|++|+.||.|++||+.++++... + . ....+.++
T Consensus 80 ~v~lWd~-~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 80 TVYVLSL-YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp EEEEEET-TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred eEEEEEC-CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence 9999999 5777888875 778999999999999999999999999999999876411 1 1 12356678
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCc------------------CCceeEEEEeCCCCEEEEEeCCCc
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH------------------LGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h------------------~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+|+|.+ ...+++|+.|+.| +||+++++.+..+..| ...|++++|+|++.+|++++.||+
T Consensus 158 ~~sp~~--~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 158 QWNPRD--IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp EEETTE--EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred EEccCC--CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 888753 3679999999999 9999999988888765 477999999999999999999999
Q ss_pred EEEEECCCCcEE
Q 007768 453 LRVWEFGIPVVI 464 (590)
Q Consensus 453 I~iwdl~~~~~~ 464 (590)
|++||+++++.+
T Consensus 235 i~lWd~~~g~~~ 246 (902)
T 2oaj_A 235 LVFWDANSGHMI 246 (902)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCcEE
Confidence 999999765544
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-33 Score=338.61 Aligned_cols=319 Identities=18% Similarity=0.278 Sum_probs=266.2
Q ss_pred cCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC
Q 007768 252 VEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN 331 (590)
Q Consensus 252 ~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~ 331 (590)
+.+...+..++..|..++.|- ....+.+.++.+|...|++++|+|+ +++|++|+.||.|+|||+ .
T Consensus 623 ~s~~~~~l~s~~~d~~i~vw~-------------~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~-~ 687 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKTLQVFK-------------AETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDS-A 687 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-------------TTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-T
T ss_pred ECCCCCEEEEEeCCCeEEEEE-------------CCCCCEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEC-C
Confidence 344444555556666666663 3445678899999999999999999 899999999999999999 6
Q ss_pred CCeeEEEeccCCCCeEEEEEcc--CCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECC
Q 007768 332 SGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 332 ~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
+++++..+.+|...|.+++|+| ++.++++|+.|+.|++||+.+++++..+..+ ..+.++.|++++ .++++|+.|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~d 764 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD---ELLASCSAD 764 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---TEEEEEESS
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---CEEEEEECC
Confidence 8899999999999999999999 5668999999999999999999998887653 345567777654 689999999
Q ss_pred CeEEEEeCCCCceEEEE-------------------------------------------------------cCcCCcee
Q 007768 409 KKIVQWDMNTKEITQEY-------------------------------------------------------DQHLGAVN 433 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~-------------------------------------------------------~~h~~~V~ 433 (590)
|.|++||+++++....+ .+|...|.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 99999999876543332 26778899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc---
Q 007768 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK--- 510 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~--- 510 (590)
+++|+|+++++++++.|+.|++||+.+...+..+. .|...|.+++|+|++.+|++++.|+.|++|++.........
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 99999999999999999999999999988877765 58899999999999999999999999999997542110000
Q ss_pred -----------------------ccc---cC---cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC
Q 007768 511 -----------------------KRF---AG---HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 511 -----------------------~~~---~~---~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
... .+ ......+.+++|+|+++++++|+.+|.|++||+.+++.+..+.+|.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 000 00 0113457889999999999999999999999999999999999999
Q ss_pred CcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 562 GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 562 ~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..|.+++|+| ++.+|++++.||.|++||
T Consensus 1004 ~~v~~l~~s~-dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1004 KAVRHIQFTA-DGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SCCCCEEECS-SSSCEEEECSSSBEEEEE
T ss_pred CceEEEEECC-CCCEEEEEcCCCEEEEEE
Confidence 9999999999 778999999999999996
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.5e-34 Score=301.93 Aligned_cols=279 Identities=13% Similarity=0.149 Sum_probs=232.5
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
..+++++|+|+ +.+|++|+.||.|++||+ ........+..| ..+....|++++++|++|+.||.|++||+.+++.+.
T Consensus 57 ~~~~~~~~s~~-g~~l~~~~~d~~v~i~d~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 57 DAGKGNTFEKV-GSHLYKARLDGHDFLFNT-IIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp BCCTTCEEEEE-ETTEEEEEETTEEEEEEC-CSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred ccccceeeeec-CCeEEEEEcCCcEEEEEe-cccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence 34568999999 899999999999999999 555555555555 445556789999999999999999999999999888
Q ss_pred Eec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007768 380 TFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 380 ~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
.+. ....+.+++|++++ .+|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 134 ~~~~h~~~v~~~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSG---EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp ETTSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ecccccCccEEEEECCCC---CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 764 34556677787754 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeec--CCC---------------------CceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC
Q 007768 459 GIPVVIKYISE--PHM---------------------HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 459 ~~~~~~~~~~~--~~~---------------------~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~ 515 (590)
+++..+..+.. .+. ..+.+++|+|++++|++++.||.|++||+++....... ..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~ 288 (420)
T 3vl1_A 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL--PSK 288 (420)
T ss_dssp TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE--CCT
T ss_pred CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc--ccc
Confidence 99988877753 122 34445556789999999999999999999887654332 223
Q ss_pred cccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCCe-EEEEEec-CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 516 HIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK-VFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~-~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
| ...+.+++|+|++. +|++|+.||.|++||+.+++ ++..+.. |...|.++.|. ++.+|++++.||.|++||
T Consensus 289 ~--~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 289 F--TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp T--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEE
T ss_pred c--CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEe
Confidence 3 46788999999999 99999999999999999875 4777877 56677777665 456999999999999996
No 67
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.9e-33 Score=306.44 Aligned_cols=322 Identities=14% Similarity=0.164 Sum_probs=263.6
Q ss_pred CCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCC-eeEEEEcC--CCCCEEEEEeCCC
Q 007768 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKG-VSAIRFFP--KYGHLILSAGMDT 322 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~-V~~l~~sp--~~g~~L~sgs~Dg 322 (590)
......+.+...+..... +...+.|-.... ..+.+.+..+.+|... |++++|+| + +++|++|+.||
T Consensus 20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~---------~~~~~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg 88 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDG---------DSKVPPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESG 88 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-TTEEEEEECCSS---------CCSSCSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTS
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEECCCC---------CCccccceEEecCCCceEEEEEECcCCC-CCEEEEecCCC
Confidence 344445555554444433 556777743311 0122678899999999 99999999 8 89999999999
Q ss_pred cEEEEecCC-------CCeeEEEeccCCCCeEEEEEccCCCEEEEEecC----CeEEEEECCCCcEEEEecCC-CcceEE
Q 007768 323 KVKIWDVVN-------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTETGQVIRTFSTG-KIPYVV 390 (590)
Q Consensus 323 ~I~iWd~~~-------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D----g~I~vWd~~t~~~~~~~~~~-~~~~~~ 390 (590)
.|+|||+.. ....+..+..|...|.+++|+|++++|++++.+ +.|.+|| +++.+..+..+ ..+.++
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEE
Confidence 999999932 246778888999999999999999999999988 6888888 56677766543 344566
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC---ceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEE
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~---~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~ 466 (590)
.|.+++ ..++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +++|++++.|+.|++||+.++..+..
T Consensus 167 ~~~~~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 167 HLKQSR--PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp EECSSS--SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred EECCCC--CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 666643 35899999999999999999999999999999 9999999999 99999999999999999999998888
Q ss_pred eec---CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE
Q 007768 467 ISE---PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 467 ~~~---~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
+.. .|...|.+++|+ ++.+|++++.|+.|++||+.+...+....... ......+..+.|+ ++.+|++|+.+|.|
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~g~i 321 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVAT-GNGRIISLSLDGTL 321 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEE-ETTEEEEEETTSCE
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-CcccCceeEEEeC-CCCeEEEEECCCCE
Confidence 744 688999999999 99999999999999999998876654433221 1123556677786 89999999999999
Q ss_pred EEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 544 WFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 544 ~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++||+.+++++..+.+|...|.+++| | + |++++.||.|++||
T Consensus 322 ~~~d~~~~~~~~~~~~~~~~v~~~~~-~-~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 322 NFYELGHDEVLKTISGHNKGITALTV-N-P---LISGSYDGRIMEWS 363 (615)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEET-T-T---TEEEETTSCEEETT
T ss_pred EEEECCCCcEEEEEeCCCCCEEEEEe-c-C---cEEECCCCeEEEEE
Confidence 99999999999999999999999999 8 3 88888888888886
No 68
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.1e-34 Score=294.21 Aligned_cols=252 Identities=20% Similarity=0.353 Sum_probs=202.6
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC-eeEEEeccCCCCeEEEEEcc--CCCEEEEEecCCeEEE
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKY 369 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~v 369 (590)
..+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.... .++..+.+|...|.+++|++ ++++|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 345799999999999999 9999999999999999994332 35778999999999999986 4899999999999999
Q ss_pred EECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC--CCEEEEE
Q 007768 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--NRRFVTS 447 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~--~~~l~s~ 447 (590)
||++++.. ..+..+.+|...|++++|+|+ +.+|+++
T Consensus 86 Wd~~~~~~------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 86 WREENGTW------------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp ECCSSSCC------------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred EECCCCcc------------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence 99875321 122345578999999999998 7899999
Q ss_pred eCCCcEEEEECCCCcEE--EEeecCCCCceeEEEEcCC-----------------CCEEEEEEcCCeEEEEEcCCceeec
Q 007768 448 SDDKSLRVWEFGIPVVI--KYISEPHMHSMPSISLHPN-----------------TNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~--~~~~~~~~~~i~~i~~sp~-----------------g~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
+.|++|++||++..... ......|...+.+++|+|+ +.+|++++.|+.|++||+.......
T Consensus 124 s~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~ 203 (316)
T 3bg1_A 124 SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK 203 (316)
T ss_dssp CSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE
T ss_pred cCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc
Confidence 99999999999876322 2333467888999999997 4789999999999999997543222
Q ss_pred ccccccCcccccceEEEEEcCCC----CEEEEEcCCCcEEEEeCCCC---e-EEEEEecCCCcEEEEEEcCCCCCEEEEE
Q 007768 509 KKKRFAGHIVAGYACQVNFSPDG----RFVMSGDGEGKCWFWDWKSC---K-VFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~dg~I~iwd~~t~---~-~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
....+.+| ...|.+++|+|++ ++|++|+.||+|+||++.+. . ....+..|...|.+++|+| ++.+|+++
T Consensus 204 ~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~ 280 (316)
T 3bg1_A 204 EEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVS 280 (316)
T ss_dssp EEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEE
T ss_pred eeeecccC--CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEE
Confidence 34456677 5679999999987 89999999999999998762 1 2344567899999999999 67899999
Q ss_pred eCCCcEEEcC
Q 007768 581 GWDGLIKYWD 590 (590)
Q Consensus 581 g~Dg~I~iWD 590 (590)
+.||.|+|||
T Consensus 281 ~~D~~v~lw~ 290 (316)
T 3bg1_A 281 GGDNKVTLWK 290 (316)
T ss_dssp ESSSCEEEEE
T ss_pred cCCCeEEEEE
Confidence 9999999996
No 69
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=315.91 Aligned_cols=315 Identities=10% Similarity=0.044 Sum_probs=225.8
Q ss_pred eecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCC-----CCCEEEEEeCCCcEEEEecCCC
Q 007768 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-----YGHLILSAGMDTKVKIWDVVNS 332 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~-----~g~~L~sgs~Dg~I~iWd~~~~ 332 (590)
+..+++.|..+|+|-...... ......++.+|.+.|.+|+|+|+ .+.+||+|+.||+|+|||+...
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~---------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTL---------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp -------CEEEEEEEEETTTC---------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred hhccCCCCceEEEEEccCCCC---------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 447778899999996533211 11234567789999999999996 2579999999999999999432
Q ss_pred C----------eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE-EEEecCC-CcceEEEEecCCCCCc
Q 007768 333 G----------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDDKQN 400 (590)
Q Consensus 333 ~----------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 400 (590)
. .+...+.+|...|++++|+++ ..|++|+.||+|++||++++.. ...+..+ ..+..+++...+....
T Consensus 246 ~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 324 (524)
T ss_dssp SSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred ccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe
Confidence 1 123578899999999999986 4899999999999999997743 3334332 3334443233322227
Q ss_pred EEEEEECCCeEEEEeCCCCceEEEEcCcCC--ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEE
Q 007768 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHLG--AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 478 (590)
Q Consensus 401 ~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~--~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i 478 (590)
+|++|+.|++|++||+++++++..+.+|.. .|.+++|+|++..|++++.|++|++||++...++..+. .|...|.++
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sv 403 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAI 403 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEE
T ss_pred EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEE
Confidence 899999999999999999887766666653 58899999999999999999999999999988766665 489999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCc---ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC-CCeEE
Q 007768 479 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-SCKVF 554 (590)
Q Consensus 479 ~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~-t~~~~ 554 (590)
+|+|++.+|++|+.|++|++|++... .+ ..+... .....+..++|+|+|..+. ... .+.+|++. ++.++
T Consensus 404 a~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~---~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~ 476 (524)
T 2j04_B 404 GVSRLHPMVLAGSADGSLIITNAARR-LL---HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSK 476 (524)
T ss_dssp ECCSSCCBCEEEETTTEEECCBSCSS-TT---TCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC--------
T ss_pred EeCCCCCeEEEEECCCEEEEEechHh-hc---cccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcce
Confidence 99999999999999999999998543 11 111111 1122466899999998653 222 24455543 57788
Q ss_pred EEEecCCCcEEEEEEcCCC--CCEEEEEeCCCcEEEcC
Q 007768 555 RTLKCHEGVCIGCEWHPLE--QSKVATCGWDGLIKYWD 590 (590)
Q Consensus 555 ~~l~~h~~~V~~v~~sp~~--~~~l~s~g~Dg~I~iWD 590 (590)
..+.+|...|.+|+|+|++ +..|++|+.||.|+||+
T Consensus 477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 477 AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred eeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 8899999999999999953 35899999999999995
No 70
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=296.43 Aligned_cols=279 Identities=15% Similarity=0.295 Sum_probs=221.2
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe-----------eEEEeccCC------------CCeEEEEEcc
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-----------CMRTYMGHS------------KAVRDISFCN 353 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-----------~~~~~~~h~------------~~V~~l~fsp 353 (590)
.|.+.|++|+|+|+ +.+|++|+.||.|+||++. .+. ++..+.+|. ..|.+++|+|
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 46789999999998 9999999999999999994 443 578889998 8899999999
Q ss_pred CC--CEEEEEecCCeEEEEECCCCcEE---------------------------------------EEec--CCCcceEE
Q 007768 354 DG--TKFLTASYDKNIKYWDTETGQVI---------------------------------------RTFS--TGKIPYVV 390 (590)
Q Consensus 354 dg--~~l~s~s~Dg~I~vWd~~t~~~~---------------------------------------~~~~--~~~~~~~~ 390 (590)
++ .+|++++.|+.|++||+.++... ..+. ....+.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999999775442 1222 23445677
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEE-------EcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCC
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQE-------YDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~-------~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~ 461 (590)
+|++++ .+|++| .|+.|++||+++. ..+.. +..|...|++++|+|++ .+|++++.||.|++||++..
T Consensus 184 ~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 184 SINSDY---ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp EECTTS---SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEcCCC---CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 777753 678888 8999999999944 44442 45799999999999998 99999999999999999987
Q ss_pred cE----EEEeecCCCC------------ceeEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCccccc----
Q 007768 462 VV----IKYISEPHMH------------SMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAG---- 520 (590)
Q Consensus 462 ~~----~~~~~~~~~~------------~i~~i~~sp~g~~la~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~---- 520 (590)
.. +..+. .+.. .|.+++|+|++.+|++++. +.|++||++. ...+ ..+.+|....
T Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~---~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 260 ALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV---ETYQVHEYLRSKLC 334 (447)
T ss_dssp SSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS---CCEESCGGGTTTHH
T ss_pred ccccceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc---ceeecccccccccc
Confidence 75 45553 3443 8999999999999999998 9999999986 4333 3344442111
Q ss_pred ---------ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC-------------------------------
Q 007768 521 ---------YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH------------------------------- 560 (590)
Q Consensus 521 ---------~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h------------------------------- 560 (590)
.+..++|+|++++|++|+.||.|+|||+.+++.+. +.+|
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccccc
Confidence 12348999999999999999999999999988763 3333
Q ss_pred --CCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 561 --EGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 561 --~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
...|..++|+| ++.+|++++.++ +.+|
T Consensus 414 ~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 414 DFNKKILHTAWHP-KENIIAVATTNN-LYIF 442 (447)
T ss_dssp CTTSCCCEEEECS-SSSEEEEECSSC-EEEE
T ss_pred ccCCceeEEEECC-CCCEEEEEecce-eeee
Confidence 34688999999 678999888776 5555
No 71
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.7e-32 Score=279.06 Aligned_cols=296 Identities=19% Similarity=0.331 Sum_probs=244.8
Q ss_pred hccCCCCCCcccCCc-ceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 007768 241 KGNAGGEKGEHVEDK-STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 319 (590)
Q Consensus 241 ~~~~~~~~~~~~~~~-s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs 319 (590)
+++.+.+....+.+. ..++.+++.|..+|.|-...... ....+.+++.+|...|++++|+|+ +.+|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~ 105 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--------NYGIPQRALRGHSHFVSDVVISSD-GQFALSGS 105 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS--------CSEEEEEEECCCSSCEEEEEECTT-SSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc--------ccceeeEEEeCCCCCEEEEEECCC-CCEEEEEc
Confidence 467777777777765 56888999999999996543321 223467889999999999999999 99999999
Q ss_pred CCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC--CcceEEEEecCCC
Q 007768 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDD 397 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~ 397 (590)
.|+.|++|+. ...........+...+..+.+++++.+|++++.|+.+++||+............ .....+.+.+...
T Consensus 106 ~d~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 106 WDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred ccccceEEee-cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 9999999999 677777888889999999999999999999999999999999877665544433 3345566666543
Q ss_pred CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeE
Q 007768 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
..++++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.|+.|++||++....+..+. +...+.+
T Consensus 185 -~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~ 261 (340)
T 4aow_A 185 -NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDIINA 261 (340)
T ss_dssp -SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred -CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CCceEEe
Confidence 3678899999999999999999999999999999999999999999999999999999999998887774 4568999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc------ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 478 i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
++|+|++.++ +++.|+.|++||+++......... ..+| ...|++++|+|+|++|++|+.||.|+|||+.+|
T Consensus 262 ~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 262 LCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE--PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC--CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred eecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 9999987655 556799999999987655433221 2233 567899999999999999999999999999987
Q ss_pred e
Q 007768 552 K 552 (590)
Q Consensus 552 ~ 552 (590)
.
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 5
No 72
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.5e-33 Score=294.90 Aligned_cols=273 Identities=25% Similarity=0.484 Sum_probs=236.2
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
....+|...|+|+.| + +.+|++|+.||.|++||+ .+++++..+.+|...|.+++| ++++|++|+.||.|++||+
T Consensus 127 ~~~~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp ECCCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEES-SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred ecccCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeC-CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 334578889999987 4 789999999999999999 688899999999999999999 7889999999999999999
Q ss_pred CCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE---EEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 373 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT---QEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 373 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~---~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
.+++.+..+..+ ...+.++.+.+ .++++|+.||.|++||++++... ..+.+|...|.++.| ++++|++++.
T Consensus 201 ~~~~~~~~~~~h-~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHH-CEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCC-CSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCC-CCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 999999888653 33344444433 58999999999999999988655 677899999999999 6789999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
||.|++||+++...+..+. .|...|.++.+ ++.+|++++.||.|++||++++..+. .+.+| ...+.+++|
T Consensus 275 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h--~~~v~~~~~-- 344 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---VLEGH--EELVRCIRF-- 344 (435)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE---EECCC--SSCEEEEEC--
T ss_pred CCeEEEEECCcCcEEEEEc-CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEE---EEeCC--cCcEEEEEe--
Confidence 9999999999998888776 58888999988 47899999999999999999876553 34455 456777888
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCe---------EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCK---------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~---------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++.+|++|+.||.|++||+.++. ++..+.+|.+.|.+++| ++.+|++|+.||.|++||
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEEECCSSSEEEEEC
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCEEEEEeCCCEEEEEE
Confidence 88999999999999999998766 88999999999999999 346799999999999997
No 73
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-33 Score=293.61 Aligned_cols=271 Identities=17% Similarity=0.215 Sum_probs=198.3
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec------CCeEEEEECCCCcEE
Q 007768 305 IRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVI 378 (590)
Q Consensus 305 l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~------Dg~I~vWd~~t~~~~ 378 (590)
+.+.+. ++++.++.+.....|++. . ....+|...|++++|+|||++|++|+. |+.|++|+..++...
T Consensus 11 ~d~g~~--~~~~~~~g~~~~~~w~~p-~----~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~ 83 (357)
T 4g56_B 11 VDLGTE--NLYFQSNGSSKGSAWGRP-V----TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN 83 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C
T ss_pred CCCCcc--ceEEecCCCccccccCCC-C----CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc
Confidence 344444 455666667888999982 2 223579999999999999999999997 788999998877543
Q ss_pred EE-----ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE----EEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 379 RT-----FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT----QEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 379 ~~-----~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~----~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
.. ......+.+++|.+++ .+++++.||.|++||+.+++.. ....+|...|++++|+|++++|++++.
T Consensus 84 ~~~~~~~~~~~~~V~~~~~s~d~----~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~ 159 (357)
T 4g56_B 84 ESLCTAGVQTEAGVTDVAWVSEK----GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK 159 (357)
T ss_dssp GGGCSEEEECSSCEEEEEEETTT----EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred eeEecccCCCCCCEEEEEEcCCC----CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 22 2334456778888753 4778899999999999987643 234579999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~-~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
|+.|++||++++..+..+. .|...|.+++|+|++. +|++++.|+.|++||++++...... ..+.....+.+++|+
T Consensus 160 dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~~~v~~v~~s 235 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---DFCASDTIPTSVTWH 235 (357)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---CCTTCCSCEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---eeccccccccchhhh
Confidence 9999999999998887775 5889999999999875 7899999999999999876544322 222235678899999
Q ss_pred CC-CCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 529 PD-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 pd-g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|+ +.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++..+|++|+.||+|+|||
T Consensus 236 p~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp TTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred hcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 97 568999999999999999999999999999999999999997778999999999999998
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.2e-32 Score=290.10 Aligned_cols=274 Identities=24% Similarity=0.481 Sum_probs=236.5
Q ss_pred eEEEecCCCCCe-eEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 007768 291 LVHTWSGHTKGV-SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 291 ~i~~l~gH~~~V-~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
..+.+.+|.+.| +|+.+ + +++|++|+.||.|++||+ ..++++..+.+|...|.+++|+ +++|++|+.||.|++
T Consensus 110 ~~~~l~~h~~~v~~~~~~--~-g~~l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF--C-GNRIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEEEEEE--E-TTEEEEEETTSCEEEEET-TTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEEEEEE--c-CCEEEEEECCCcEEEEEC-CCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 446788999875 55554 5 789999999999999999 6888999999999999999997 679999999999999
Q ss_pred EECCCCcEEEEecCCCc-ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007768 370 WDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
||+.+++.+..+..+.. +.++.+ ++ ..+++|+.||.|++||+++++.+..+..|...|.++.| ++.+|++++
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~--~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHL--HE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEE--ET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE
T ss_pred EECCcCcEEEEECCCCCcEEEEEe--cC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc
Confidence 99999999988864332 334444 32 57999999999999999999999999999999999999 688999999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007768 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
.||.|++||+++...+..+. .|...|.++.| ++.+|++++.|+.|++||+.++..+. .+.+| ...+.++.+
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~--~~~v~~~~~- 327 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGH--QSLTSGMEL- 327 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE---EECCC--CSCEEEEEE-
T ss_pred CCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE---EEcCC--cccEEEEEE-
Confidence 99999999999988887775 58889999999 78999999999999999998876553 34444 345555555
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeEEEEEec---CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 529 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++++|++|+.||.|++||+.+++++..+.. |...|.+++|++ .+|++|+.||.|++||
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWD 388 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEE
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEE
Confidence 677999999999999999999999999987 888999999964 6999999999999997
No 75
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5e-32 Score=275.14 Aligned_cols=283 Identities=20% Similarity=0.408 Sum_probs=236.3
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg 322 (590)
+.+.+....+.+...+..+...|...|.|-. ...+++..+.+|...|.+++|+|+ +++|++|+.|+
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~-------------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~ 87 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDK 87 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEET-------------TTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeC-------------CCcccchhhccCCCceEEEEEcCC-CCEEEEECCCC
Confidence 3334445556666777788888999999843 234567889999999999999999 89999999999
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC-cceEEEEecCCCCCcE
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNI 401 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 401 (590)
.|+|||+ ..++++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+..+. .+..+.+.+++ .+
T Consensus 88 ~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~ 163 (312)
T 4ery_A 88 TLKIWDV-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG---SL 163 (312)
T ss_dssp EEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SE
T ss_pred EEEEEEC-CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC---CE
Confidence 9999999 6788999999999999999999999999999999999999999999988886543 45567776644 68
Q ss_pred EEEEECCCeEEEEeCCCCceEEEEc-CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCc---eeE
Q 007768 402 LLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS---MPS 477 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~---i~~ 477 (590)
|++|+.|+.|++||+++++.+..+. .+...+.+++|+|++++|++++.|+.|++||++....+..+.. +... +..
T Consensus 164 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~ 242 (312)
T 4ery_A 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFA 242 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS-SCCSSSCCCE
T ss_pred EEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe-cCCceEEEEE
Confidence 9999999999999999998877764 4667899999999999999999999999999999988777653 3333 233
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCC
Q 007768 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWK 549 (590)
Q Consensus 478 i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~ 549 (590)
....+++.+|++++.||.|++||+.+...+ ..+.+| ...+.+++|+|++++|++++ .|+.|++|+..
T Consensus 243 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV---QKLQGH--TDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECSSSCEEEECCTTSCEEEEETTTCCEE---EEECCC--SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEeCCCcEEEEECCCCEEEEEECCCchhh---hhhhcc--CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 334467899999999999999999887554 445566 46788999999999999986 69999999864
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=325.26 Aligned_cols=333 Identities=10% Similarity=0.095 Sum_probs=242.7
Q ss_pred CcccCCcceeecccccccccceeecCCccccccCCCccCCc--ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 249 GEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPK--RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 326 (590)
Q Consensus 249 ~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~--~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~i 326 (590)
...+.+...+...+..|..+|.|-.......... ++. .....+.+|.+.|++|+|+|+++.+|++|+.||.| |
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~----i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-l 177 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK----LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-T 177 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE----ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-E
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCccccce----eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-E
Confidence 3455666667777788999999965433211000 000 00023478999999999999756899999999999 9
Q ss_pred EecCCCCeeEEEeccC------------------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE--ec----
Q 007768 327 WDVVNSGKCMRTYMGH------------------SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--FS---- 382 (590)
Q Consensus 327 Wd~~~~~~~~~~~~~h------------------~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~--~~---- 382 (590)
||+ ..+++++.+..| ...|++++|+|+|.+|++|+.||.|++||+.+++++.. +.
T Consensus 178 Wd~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~ 256 (902)
T 2oaj_A 178 YSL-VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI 256 (902)
T ss_dssp EET-TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCT
T ss_pred EEC-CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccccc
Confidence 999 677888888766 57799999999999999999999999999999887653 21
Q ss_pred C-------------CCcceEEEEecCC--C--------------------------------------------------
Q 007768 383 T-------------GKIPYVVKLNPDD--D-------------------------------------------------- 397 (590)
Q Consensus 383 ~-------------~~~~~~~~~~~~~--~-------------------------------------------------- 397 (590)
. ...+..++|.+.. +
T Consensus 257 ~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (902)
T 2oaj_A 257 NVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKI 336 (902)
T ss_dssp TSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEE
T ss_pred CCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEE
Confidence 0 1122333442210 0
Q ss_pred --------------------------CCcEEEEEECCCeEEEEeCCCCceEEE---------------------------
Q 007768 398 --------------------------KQNILLAGMSDKKIVQWDMNTKEITQE--------------------------- 424 (590)
Q Consensus 398 --------------------------~~~~lvsg~~dg~I~iwD~~t~~~~~~--------------------------- 424 (590)
+...+++++.|+.|++||+.++.....
T Consensus 337 ~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~ 416 (902)
T 2oaj_A 337 FPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKL 416 (902)
T ss_dssp ECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHH
T ss_pred EecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHH
Confidence 011345555667788888766532211
Q ss_pred --------------EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE----EEee------cCCCCceeEEEE
Q 007768 425 --------------YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI----KYIS------EPHMHSMPSISL 480 (590)
Q Consensus 425 --------------~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~----~~~~------~~~~~~i~~i~~ 480 (590)
+.+|...+.+++|+|++++|++|+.|++|++||+..+... ..+. ..|...|.+++|
T Consensus 417 w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svaf 496 (902)
T 2oaj_A 417 WLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISF 496 (902)
T ss_dssp HHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEE
T ss_pred HHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEe
Confidence 1233344445556788999999999999999999765321 1111 157789999999
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCceee------------------------------------------cccccccCccc
Q 007768 481 HPNTNWLAAQSLDNQILIYSTRERFQL------------------------------------------NKKKRFAGHIV 518 (590)
Q Consensus 481 sp~g~~la~~s~dg~I~iwd~~~~~~~------------------------------------------~~~~~~~~~~~ 518 (590)
+|++++||+|+.||+|+||++.+.... .....+.+|
T Consensus 497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h-- 574 (902)
T 2oaj_A 497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN-- 574 (902)
T ss_dssp ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC--
T ss_pred cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC--
Confidence 999999999999999999998765210 113344555
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEE-----Ee-cCCCcEEEEEEc-----CCC--CCEEEEEeCCCc
Q 007768 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-----LK-CHEGVCIGCEWH-----PLE--QSKVATCGWDGL 585 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~-----l~-~h~~~V~~v~~s-----p~~--~~~l~s~g~Dg~ 585 (590)
.+.|++++||||| +||+|+.||+|+|||+.+...+.. +. +|...|++++|+ |++ +.+|++|+.||+
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 5789999999999 999999999999999998877642 22 788899999999 843 479999999999
Q ss_pred EEEcC
Q 007768 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|++||
T Consensus 654 v~~wd 658 (902)
T 2oaj_A 654 VITYK 658 (902)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 77
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.7e-33 Score=282.71 Aligned_cols=291 Identities=18% Similarity=0.239 Sum_probs=216.3
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC---eeEEEeccCCCCeEEEEEcc--CCCEEEEEecCCe
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG---KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKN 366 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~---~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~ 366 (590)
.+.+.+|.+.|++|+|+|+ +.+|++|+.||.|+||++.... ..+..+.+|...|.+++|+| ++++|++++.||.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 4567899999999999998 8999999999999999994322 56778889999999999999 6999999999999
Q ss_pred EEEEECCCC---------cEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc----------
Q 007768 367 IKYWDTETG---------QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---------- 426 (590)
Q Consensus 367 I~vWd~~t~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~---------- 426 (590)
|++||+.++ +.+..+.. ...+..+.|.+.. .+.+|++++.||.|++||+++++.+..+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH-LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCC-CCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 999999987 44555543 3445667777651 13689999999999999999876443322
Q ss_pred ---CcCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCceeEEEEcCCC----CEEEEEEcCCe
Q 007768 427 ---QHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNT----NWLAAQSLDNQ 495 (590)
Q Consensus 427 ---~h~~~V~~i~~~p~---~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g----~~la~~s~dg~ 495 (590)
.|...+.++.|+|+ +.+|++++.++.+.+|+....... ......|...|.+++|+|++ .+|++++.||.
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 57889999999997 899999999999988887766542 22234588899999999998 89999999999
Q ss_pred EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcC
Q 007768 496 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 496 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg----s~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
|++||++......... .. ........+++....+..+ .....+.+|+....+++..+.+|...|++++|+|
T Consensus 242 i~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 242 IRIFKITEKLSPLASE---ES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp EEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred EEEEeCCCCcCccccC---Cc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 9999998653322111 11 1112223334444444333 3455677888788889999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 007768 572 LEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 572 ~~~~~l~s~g~Dg~I~iWD 590 (590)
++.+|++|+.||.|+|||
T Consensus 317 -~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 317 -TGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp -SSCCEEEEETTSCEEEEE
T ss_pred -CCCEEEEecCCCcEEEEe
Confidence 678999999999999996
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-32 Score=309.93 Aligned_cols=293 Identities=19% Similarity=0.338 Sum_probs=235.8
Q ss_pred cCCCCCCcccCC-cceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007768 243 NAGGEKGEHVED-KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 243 ~~~~~~~~~~~~-~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~D 321 (590)
|.+......+.+ ...++.+++.|..+|.|-...... ......+.+.+|...|++++|+|+ +++|++|+.|
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~--------~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~D 451 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK--------AYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWD 451 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT--------CSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETT
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc--------ccccccceecCCCCcEEEEEECCC-CCEEEEEeCC
Confidence 333444444443 346778899999999996543221 123456789999999999999999 9999999999
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC--C--CcceEEEEecCCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--G--KIPYVVKLNPDDD 397 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~--~--~~~~~~~~~~~~~ 397 (590)
|+|+|||+ ..+.+++.+.+|...|.+++|+|++++|++|+.|++|+|||+........... + ..+.++.++++..
T Consensus 452 g~v~vwd~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 452 GELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp SEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred CcEEEEEC-CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 99999999 68889999999999999999999999999999999999999876544433321 2 2355677776542
Q ss_pred CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeE
Q 007768 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
..++++|+.|+.|++||++++++...+.+|.+.|++++|+|++++|++++.||.|++||++++..+..+ .+...+.+
T Consensus 531 -~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~--~~~~~v~~ 607 (694)
T 3dm0_A 531 -QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--EANSVIHA 607 (694)
T ss_dssp -SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC--BCSSCEEE
T ss_pred -cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--cCCCcEEE
Confidence 368999999999999999999999999999999999999999999999999999999999999877665 35567999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC--------------cccccceEEEEEcCCCCEEEEEcCCCcE
Q 007768 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG--------------HIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 478 i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~--------------~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
++|+|++.+|++++ ++.|++||+.+...+........ ......+++++|||+|++|++|+.||.|
T Consensus 608 ~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i 686 (694)
T 3dm0_A 608 LCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686 (694)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence 99999998887765 66799999988765543321100 0011246789999999999999999999
Q ss_pred EEEeCC
Q 007768 544 WFWDWK 549 (590)
Q Consensus 544 ~iwd~~ 549 (590)
+||++.
T Consensus 687 ~iW~i~ 692 (694)
T 3dm0_A 687 RVWGIG 692 (694)
T ss_dssp EEEEC-
T ss_pred EEEecc
Confidence 999975
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=284.39 Aligned_cols=260 Identities=20% Similarity=0.338 Sum_probs=213.1
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCeeEEEeccCCCCeEEEEEccC--CCEEEEEecCCe
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKN 366 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~ 366 (590)
+++.++.+|.+.|++++|+|+ +.+|++|+.||.|+||++.. ....+..+.+|...|++++|+++ +++|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 356678899999999999999 89999999999999999942 45677889999999999999976 999999999999
Q ss_pred EEEEECCCCc--EEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEeC--
Q 007768 367 IKYWDTETGQ--VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVD-- 439 (590)
Q Consensus 367 I~vWd~~t~~--~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~--~~~~~~~~h~~~V~~i~~~p-- 439 (590)
|++||+.+++ .+..+.. ...+.++.|.++.. +.+|++++.|+.|++||++++ .....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCC-CCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 9999999987 5555543 34566777776521 368999999999999999987 34556678999999999999
Q ss_pred -----------CCCEEEEEeCCCcEEEEECCCCcE---EEEeecCCCCceeEEEEcCC---CCEEEEEEcCCeEEEEEcC
Q 007768 440 -----------SNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPN---TNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 440 -----------~~~~l~s~s~Dg~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~---g~~la~~s~dg~I~iwd~~ 502 (590)
++.+|++++.|+.|++||++.... .......|...|.+++|+|+ +.+|++++.||.|++||+.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 689999999999999999976542 22233468889999999999 8999999999999999998
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
...................+.+++|+|+|++|++++.||.|++|++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 7532222222222223567899999999999999999999999998753
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-32 Score=277.12 Aligned_cols=251 Identities=20% Similarity=0.287 Sum_probs=203.6
Q ss_pred EEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC--cEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEE
Q 007768 336 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
+..+.+|...|++++|+|+|++|++|+.|++|+|||+... +++..+..+ ..+.++.|.+.. .+.+|++|+.|+.|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEE
Confidence 3457799999999999999999999999999999999753 556666543 334556665431 247899999999999
Q ss_pred EEeCCCCc--eEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCceeEEEEcCC----
Q 007768 413 QWDMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPN---- 483 (590)
Q Consensus 413 iwD~~t~~--~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~---- 483 (590)
+||+++++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++..... ......|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99999874 56678889999999999997 889999999999999999865321 2233468889999999997
Q ss_pred ---------CCEEEEEEcCCeEEEEEcCCcee-ecccccccCcccccceEEEEEcCCC---CEEEEEcCCCcEEEEeCCC
Q 007768 484 ---------TNWLAAQSLDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFSPDG---RFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 484 ---------g~~la~~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~v~~v~~spdg---~~l~sgs~dg~I~iwd~~t 550 (590)
+++|++++.|+.|++||+++... ......+.+| ...|.+++|+|++ .+|++|+.|+.|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 57999999999999999976432 1123456677 5679999999985 8999999999999999977
Q ss_pred Ce---EEEEE--ecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 551 CK---VFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 ~~---~~~~l--~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.. ....+ ..|...|.+++|+| ++.+|++++.||.|+||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEE
T ss_pred CCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence 43 12233 46788999999999 778999999999999995
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.2e-33 Score=291.62 Aligned_cols=282 Identities=19% Similarity=0.287 Sum_probs=229.0
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe---eEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCC-
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETG- 375 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~- 375 (590)
....++++|+...++++++.||.|+||++...+. .+..+.+|...|++++|+| ++++|++|+.||.|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 4556889988445566789999999999954433 4556789999999999999 9999999999999999999987
Q ss_pred ------cEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE--cCcCCceeEEEEeCCCCEEEE
Q 007768 376 ------QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 376 ------~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~--~~h~~~V~~i~~~p~~~~l~s 446 (590)
+.+..+.. ...+.++.|++++ .++|++|+.|+.|++||+++++.+..+ ..|...|.+++|+|++++|++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTA--QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSB--TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCC--CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 44555543 3455667777654 368999999999999999999999999 889999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCc-eeEEEEcCCCCEEEEE---EcCCeEEEEEcCCceeecccccccCcccccce
Q 007768 447 SSDDKSLRVWEFGIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQ---SLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~-i~~i~~sp~g~~la~~---s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
++.|+.|++||++....+..+...|... +.++.|+|++.+|+++ +.|+.|++||+++.........+ .+ ...+
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~--~~~v 270 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT--SSGV 270 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC--CSSC
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC--CCce
Confidence 9999999999999998888874456554 8999999999999999 78999999999875432212211 12 3567
Q ss_pred EEEEEcCCCCEEE-EEcCCCcEEEEeCCCCeE-EEEEec--CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 523 CQVNFSPDGRFVM-SGDGEGKCWFWDWKSCKV-FRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 523 ~~v~~spdg~~l~-sgs~dg~I~iwd~~t~~~-~~~l~~--h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..++|+|++++|+ +|+.||.|++||+.+++. +..+.. |...|.+++|+| ++.++++ .|+.+++|+
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-GGGSCGG--GTEEEEEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-cccccee--cceeEEEEE
Confidence 8899999999996 566799999999999874 555544 458999999999 5555554 577899995
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-31 Score=306.76 Aligned_cols=322 Identities=16% Similarity=0.271 Sum_probs=261.2
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg 322 (590)
+.+......+++...+......|..++.|-. ...+.+.++.+|..+|++++|+|+ +.+|++|+.||
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~-------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 77 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNY-------------ETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDF 77 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEET-------------TTTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTS
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEEC-------------CCCceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCC
Confidence 4445555667777777777778888888843 234678899999999999999999 89999999999
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC-cEEEEecC-CCcceEEEEecCCCCCc
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFST-GKIPYVVKLNPDDDKQN 400 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 400 (590)
.|+|||+ .+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++ .....+.. ...+.++.|+|. .+.
T Consensus 78 ~i~vw~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~ 154 (814)
T 3mkq_A 78 RIRVFNY-NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--DPS 154 (814)
T ss_dssp EEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT--EEE
T ss_pred eEEEEEC-CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC--CCC
Confidence 9999999 688899999999999999999999999999999999999999987 55555543 344567777762 236
Q ss_pred EEEEEECCCeEEEEeCCCCceEEEEcCcC-CceeEEEEeC--CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeE
Q 007768 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 401 ~lvsg~~dg~I~iwD~~t~~~~~~~~~h~-~~V~~i~~~p--~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
.+++++.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++++.||.|++||+..+..+..+. .|...|.+
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~ 233 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSF 233 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEE
Confidence 89999999999999999888777776554 8999999999 99999999999999999999988877775 48889999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC--EEEEEcCCCcEEEEeCCCCe---
Q 007768 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKSCK--- 552 (590)
Q Consensus 478 i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~t~~--- 552 (590)
++|+|++.+|++++.||.|++||+.++..... +..+ ...+.+++|+|+|. ++++++ ++.+.+|++....
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~---~~~~--~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 307 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT---LNVG--LERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTL 307 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEE---ECCS--SSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE---eecC--CCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCcee
Confidence 99999999999999999999999987655433 3333 45688999999987 455555 6678888875432
Q ss_pred -------EEE---------------------------------EEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 553 -------VFR---------------------------------TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 553 -------~~~---------------------------------~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+. .+..|...+.+++|+| ++.+|++++ ||.+.+|+
T Consensus 308 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 308 SLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp EECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEE
T ss_pred EECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEE
Confidence 211 1122344578899999 677888887 88999885
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.8e-32 Score=282.31 Aligned_cols=296 Identities=9% Similarity=0.140 Sum_probs=239.2
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCC---CC---CEEE
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK---YG---HLIL 316 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~---~g---~~L~ 316 (590)
+.+.+....+.+ .+..+...|...+.|-..... ...+..++..+.+|...|++++|+|+ ++ .+|+
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD-------NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCT-------TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcc-------cccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 444444555555 566778889999999654332 22345578889999999999999997 46 8999
Q ss_pred EEeCCCcEEEEecCCCCee-----EEEeccC-----CCCeEEEEEc----cCCCE-EEEEecCCeEEEEECCC------C
Q 007768 317 SAGMDTKVKIWDVVNSGKC-----MRTYMGH-----SKAVRDISFC----NDGTK-FLTASYDKNIKYWDTET------G 375 (590)
Q Consensus 317 sgs~Dg~I~iWd~~~~~~~-----~~~~~~h-----~~~V~~l~fs----pdg~~-l~s~s~Dg~I~vWd~~t------~ 375 (590)
+++.||.|++|++ ..+.. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ +
T Consensus 86 s~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 86 TTSFSGDLLFYRI-TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEETTSCEEEEEE-EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEcCCCCEEEEEc-cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999 45555 7888888 5999999999 99999 99999999999999998 6
Q ss_pred cEEE-----Eec--------CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC---c---CCceeEEE
Q 007768 376 QVIR-----TFS--------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---H---LGAVNTIT 436 (590)
Q Consensus 376 ~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~---h---~~~V~~i~ 436 (590)
+.+. .+. ....+.++.+.+++ ++++|+.|+.|++||+++++.+..+.. | ...|.+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc----eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 5544 443 24556677777743 899999999999999999999999988 9 99999999
Q ss_pred EeCCCCEEEEEeCC---CcEEEEECCCCcEEEEeecC------------CCCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 437 FVDSNRRFVTSSDD---KSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 437 ~~p~~~~l~s~s~D---g~I~iwdl~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
|+|++.+|++++.| +.|++||+++...+..+..+ |...|.+++|+|++.+|++++.|+.|++||+
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99999999999999 99999999999888777532 7889999999999999999999999999999
Q ss_pred CCceeeccccccc---Cc-------------ccccceEEEEEcCCC----------CEEEEEcCCCcEEEEeCCCCe
Q 007768 502 RERFQLNKKKRFA---GH-------------IVAGYACQVNFSPDG----------RFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 502 ~~~~~~~~~~~~~---~~-------------~~~~~v~~v~~spdg----------~~l~sgs~dg~I~iwd~~t~~ 552 (590)
.+...+..+.... +| .....|.+++|+|+| ++|++|+.||.|++|++.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8876654443100 22 014678999999998 799999999999999998764
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-31 Score=270.76 Aligned_cols=286 Identities=19% Similarity=0.283 Sum_probs=240.5
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg 322 (590)
+.+.+....+.+...+......|...+.|-. ...+.+.++.+|...|++++|+|+ +++|++++.||
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~-------------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg 96 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYS-------------LNGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADY 96 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEET-------------TTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTT
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeC-------------CCchhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCC
Confidence 4444555566666667777788888888843 234678899999999999999998 89999999999
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCcEE-----------EEecC-CC
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQVI-----------RTFST-GK 385 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D-----g~I~vWd~~t~~~~-----------~~~~~-~~ 385 (590)
.|++||+ ..++++..+. |...|.+++|+|++++|++++.+ +.|++||+..+... ..+.. ..
T Consensus 97 ~i~iwd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 97 SIKLWDV-SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EEEEEET-TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred eEEEEEC-CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 9999999 6778888777 88999999999999999999999 99999999765321 11111 11
Q ss_pred --cceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 007768 386 --IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 386 --~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
...++++.+++ .+|++++.||.|++||+++ +..+..+..|...|.+++|+|++++|++++.|+.|++||+++..
T Consensus 175 ~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 175 LDAATVAGWSTKG---KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp CCCEEEEEECGGG---CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ccceeEEEEcCCC---CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 55667777644 6899999999999999999 78888999999999999999999999999999999999999998
Q ss_pred EEEEeecCCCCceeEEEEcCCCCEEEEEEcCC--------------eEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007768 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--------------QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 463 ~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
.+..+. +...+.+++|+|++.++++++.++ .|++||+.+...+. .+.+| ...|.+++|+
T Consensus 252 ~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~--~~~v~~~~~s 324 (369)
T 3zwl_B 252 VLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG---RVQGH--FGPLNTVAIS 324 (369)
T ss_dssp EEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE---EEECC--SSCEEEEEEC
T ss_pred eeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh---heecc--cCcEEEEEEC
Confidence 888775 677899999999999999999988 89999998876553 34555 5678899999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeEE
Q 007768 529 PDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
|++++|++|+.||.|+||++.++...
T Consensus 325 ~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 325 PQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp TTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred CCCCEEEEEcCCCeEEEEECccccch
Confidence 99999999999999999999876543
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5e-32 Score=279.51 Aligned_cols=246 Identities=15% Similarity=0.295 Sum_probs=207.9
Q ss_pred CCCCeeEEEEcCCC---CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECC
Q 007768 298 HTKGVSAIRFFPKY---GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 298 H~~~V~~l~~sp~~---g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~ 373 (590)
|...|++++|+|+. +.+|++|+.||.|+|||+ ..++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP-ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT-TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc-hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 77889999999984 359999999999999999 67888999999999999999999 99999999999999999999
Q ss_pred CCcEEEEec----CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE------------------------
Q 007768 374 TGQVIRTFS----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY------------------------ 425 (590)
Q Consensus 374 t~~~~~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~------------------------ 425 (590)
+++.+..+. ....+.++.|++++ .+|++++.||.|++||+++++....+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLG---EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTS---SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred cCeEEEEecccccccCceeEEEECCCC---CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 999988873 34455667777643 68999999999999999987654333
Q ss_pred ----cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--------------EEEeecCCCCceeEEEEcCC--CC
Q 007768 426 ----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--------------IKYISEPHMHSMPSISLHPN--TN 485 (590)
Q Consensus 426 ----~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~--------------~~~~~~~~~~~i~~i~~sp~--g~ 485 (590)
..|...|.+++|+ +++|++++.|+.|++||+..... +..+ ..|...|.+++|+|+ +.
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCDIWYMRFSMDFWQK 300 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCCSSCCCCEECTTSS
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCcEEEEEEcCCCCCc
Confidence 3399999999998 77999999999999999977543 4443 357788999999999 99
Q ss_pred EEEEEEcCCeEEEEEcCCceeec-ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 486 WLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
+|++++.||.|++||+.+..... ....+.+|.....|.+++|+|++++|++|+.||.|++||+.+
T Consensus 301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999999999998765433 233455664467899999999999999999999999999853
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-30 Score=270.78 Aligned_cols=288 Identities=14% Similarity=0.156 Sum_probs=231.7
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007768 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I 324 (590)
+.+....+.+...+......|...+.|-..... .+++.++.+|...|++++|+|+ +++|++++.||.|
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i 76 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----------WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNA 76 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----------EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeE
Confidence 344555566666677777778888888442210 1277889999999999999998 8999999999999
Q ss_pred EEEecCCCCeeEE--EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE---EEEecC--CCcceEEEEecCCC
Q 007768 325 KIWDVVNSGKCMR--TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFST--GKIPYVVKLNPDDD 397 (590)
Q Consensus 325 ~iWd~~~~~~~~~--~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~---~~~~~~--~~~~~~~~~~~~~~ 397 (590)
++||+ ..++... .+..|...|.+++|+|++++|++++.|+.|++||+..+.. ...+.. ...+.++.+.+++
T Consensus 77 ~vwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 154 (372)
T 1k8k_C 77 YVWTL-KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS- 154 (372)
T ss_dssp EEEEE-ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-
T ss_pred EEEEC-CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-
Confidence 99999 4555433 3467999999999999999999999999999999998763 334433 3445566676643
Q ss_pred CCcEEEEEECCCeEEEEeC------------------CCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007768 398 KQNILLAGMSDKKIVQWDM------------------NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~------------------~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
.+|++|+.|+.|++||+ ..++.+..+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 155 --~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 155 --VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp --SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred --CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 68999999999999995 4678888998999999999999999999999999999999999
Q ss_pred CCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC--ce--eec---------------------------
Q 007768 460 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE--RF--QLN--------------------------- 508 (590)
Q Consensus 460 ~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~--~~--~~~--------------------------- 508 (590)
+...+..+. .+...+.+++|+|++.+|+++ .|+.|++|++.. +. ...
T Consensus 233 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 233 KKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp GTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred CCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 998888776 477899999999999988887 899999999977 31 000
Q ss_pred c-------cccccCcccccceEEEEEc-CCC---CEEEEEcCCCcEEEEeCCCCe
Q 007768 509 K-------KKRFAGHIVAGYACQVNFS-PDG---RFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 509 ~-------~~~~~~~~~~~~v~~v~~s-pdg---~~l~sgs~dg~I~iwd~~t~~ 552 (590)
. .....+| ...|.+++|+ ++| .+|++|+.||.|++||+.+++
T Consensus 311 ~~~~~~~~~~~~~~h--~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 311 SEGSAAAGAGLDSLH--KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp --------CCCSSSS--SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccCccccccccccc--cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 0 1111355 5678999866 677 999999999999999987654
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=275.02 Aligned_cols=295 Identities=12% Similarity=0.120 Sum_probs=225.1
Q ss_pred cCCCCCCcccCCcc-eeeccccc---ccccceeecCCccccccCCCccCCcceEEE-ecCCCCCeeEEEEcCCC--CCEE
Q 007768 243 NAGGEKGEHVEDKS-TFHGKEET---DYQGRSWIAPPKDAKAANDHCYIPKRLVHT-WSGHTKGVSAIRFFPKY--GHLI 315 (590)
Q Consensus 243 ~~~~~~~~~~~~~s-~~~~~~~~---d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~-l~gH~~~V~~l~~sp~~--g~~L 315 (590)
+........+.+.. .+...... |...+.|-.... ++... ..+|...|++++|+|+. +.+|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 83 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-------------DLKLLREIEKAKPIKCGTFGATSLQQRYL 83 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS-------------SEEEEEEEEESSCEEEEECTTCCTTTCCE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC-------------cccceeeecccCcEEEEEEcCCCCCCceE
Confidence 33344445555544 45555544 888888854322 22222 23899999999999985 6999
Q ss_pred EEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEE------ccCCCEEEEEecCCeEEEEECCCCc-EEEEecCCC---
Q 007768 316 LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF------CNDGTKFLTASYDKNIKYWDTETGQ-VIRTFSTGK--- 385 (590)
Q Consensus 316 ~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~f------spdg~~l~s~s~Dg~I~vWd~~t~~-~~~~~~~~~--- 385 (590)
++|+.||.|++||+......+..+.+|...|.++.| +|++++|++++.||.|++||+.++. .+..+....
T Consensus 84 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp EEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred EEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence 999999999999994333388899999999999955 6789999999999999999999887 566664322
Q ss_pred --cceEEEEec-CCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECC
Q 007768 386 --IPYVVKLNP-DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 386 --~~~~~~~~~-~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~ 459 (590)
....+.+.+ ....+.++++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++.||.|++||++
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 344455322 223457899999999999999999987554 56889999999999 89999999999999999997
Q ss_pred CCcEEEEe----ecCCCCceeEEEEcCCCC-EEEEEEcCCeEEEEEcCCceee----------------cccccccCccc
Q 007768 460 IPVVIKYI----SEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQL----------------NKKKRFAGHIV 518 (590)
Q Consensus 460 ~~~~~~~~----~~~~~~~i~~i~~sp~g~-~la~~s~dg~I~iwd~~~~~~~----------------~~~~~~~~~~~ 518 (590)
.......+ ...|...|.+++|+|++. +|++++.||.|++||++..... .....+.+|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 320 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-- 320 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC--
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC--
Confidence 65433222 136888999999999998 8999999999999999764322 233445555
Q ss_pred ccceEEEEEcCCCCEEE-EEcCCCcEEEEeCCCCeE
Q 007768 519 AGYACQVNFSPDGRFVM-SGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~-sgs~dg~I~iwd~~t~~~ 553 (590)
...|.+++|+|+|++|+ +|+.||.|+|||+.+.+.
T Consensus 321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 56789999999999998 899999999999987654
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-30 Score=278.08 Aligned_cols=281 Identities=14% Similarity=0.163 Sum_probs=228.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe---eEEEecc----------------------------------
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMG---------------------------------- 341 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~---------------------------------- 341 (590)
..+|++|+|+|+ |++|+++ .++.|++||+ .+++ .+..+..
T Consensus 4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKY-QSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp ECCCCEEEECSS-SSEEEEE-ETTEEEEEEE-ETTTEEEEEEEEECCC--------------------------------
T ss_pred cccEEEEEecCC-CCEEEEE-eCCeEEEEEC-CCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 357999999999 7766655 5789999999 4565 5555543
Q ss_pred --------------------CCCCeEEEEEccCCCEE-EEEecCCeEEEEECC--CCcEEEEec---CCCcceEEEEecC
Q 007768 342 --------------------HSKAVRDISFCNDGTKF-LTASYDKNIKYWDTE--TGQVIRTFS---TGKIPYVVKLNPD 395 (590)
Q Consensus 342 --------------------h~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~--t~~~~~~~~---~~~~~~~~~~~~~ 395 (590)
|...|++++|+|++++| ++++.||.|+|||+. +++++..+. ....+.+++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 33479999999999996 889999999999999 888887774 3455667778775
Q ss_pred CCCCcEEEEEECCCeEEEEeCCCCceEE----EEcCcCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007768 396 DDKQNILLAGMSDKKIVQWDMNTKEITQ----EYDQHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~iwD~~t~~~~~----~~~~h~~~V~~i~~~p~---~~~l~s~s~Dg~I~iwdl~~~~~~~~~~ 468 (590)
+ .+|++|+.+|.|++|++.++.... .+.+|...|++++|+|+ +++|++++.|+.|++||++....+..+.
T Consensus 161 ~---~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 161 D---TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp S---SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred C---CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 4 689999999999999998876543 66789999999999999 9999999999999999999988887766
Q ss_pred cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc--------Cc------------ccccceEEEEEc
Q 007768 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA--------GH------------IVAGYACQVNFS 528 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~--------~~------------~~~~~v~~v~~s 528 (590)
..|...|.+++|+ ++.+|++++.|+.|++||+.++..+..+.... .+ .....+..++|+
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 6789999999999 99999999999999999998876554332110 00 123457889999
Q ss_pred CCCCEEEEEc-CCCcEEEEeC--CCC---eEEEEEecCCCcEEEEEEcCCCCCEEEEEeC-------CCcEEEc
Q 007768 529 PDGRFVMSGD-GEGKCWFWDW--KSC---KVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-------DGLIKYW 589 (590)
Q Consensus 529 pdg~~l~sgs-~dg~I~iwd~--~t~---~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~-------Dg~I~iW 589 (590)
|++++|++++ .++.|+||++ .++ +.+..+..| +.|.+++|+| +. ++++++. +..|.||
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEEEecccCCCCCCcceEEE
Confidence 9999999998 8999999999 665 778888888 7899999999 54 5555443 4457777
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-30 Score=270.47 Aligned_cols=273 Identities=17% Similarity=0.227 Sum_probs=221.0
Q ss_pred ccccccccceeecCCccccccCCCccCCcceEEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEe
Q 007768 261 KEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY 339 (590)
Q Consensus 261 ~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~g-H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~ 339 (590)
....|...+.|-.. ..++...+.. |...|++++|+|+ +.+|++|+.||.|+|||+ ..++.+..+
T Consensus 108 ~~~~d~~v~lw~~~-------------~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~-~~~~~~~~~ 172 (401)
T 4aez_A 108 AVALERNVYVWNAD-------------SGSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDV-ESQTKLRTM 172 (401)
T ss_dssp EEEETTEEEEEETT-------------TCCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEE
T ss_pred EEECCCeEEEeeCC-------------CCcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEEC-cCCeEEEEe
Confidence 44567778888443 2344455554 8999999999998 899999999999999999 678889999
Q ss_pred ccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC-CCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC
Q 007768 340 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 417 (590)
Q Consensus 340 ~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~-t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~ 417 (590)
.+|...|.+++| ++.+|++++.||.|++||+. .+..+..+.. ...+.++.++++ +.+|++|+.|+.|++||++
T Consensus 173 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 173 AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD---GLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEETT
T ss_pred cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC---CCEEEEEeCCCeEEEccCC
Confidence 999999999999 46799999999999999998 4555555543 344556777764 3689999999999999999
Q ss_pred CCceEEEEcCcCCceeEEEEeCCCC-EEEEEe--CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE--c
Q 007768 418 TKEITQEYDQHLGAVNTITFVDSNR-RFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--L 492 (590)
Q Consensus 418 t~~~~~~~~~h~~~V~~i~~~p~~~-~l~s~s--~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s--~ 492 (590)
+++.+..+..|...|.+++|+|++. .+++++ .|+.|++||+.+...+..+. +...+.+++|+|++.+|++++ .
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTT
T ss_pred CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecC
Confidence 9999999999999999999999765 555554 69999999999998888774 567899999999999999955 8
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe
Q 007768 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
||.|++|++.+..... ...+.+| ...+.+++|+|+|++|++++.||.|++|++.+++.+....
T Consensus 326 dg~i~v~~~~~~~~~~-~~~~~~h--~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 326 DNNLSIWSYSSSGLTK-QVDIPAH--DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp TCEEEEEEEETTEEEE-EEEEECC--SSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCcEEEEecCCcccee-EEEecCC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 9999999998754332 2234455 4678899999999999999999999999999998776554
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-31 Score=272.44 Aligned_cols=253 Identities=20% Similarity=0.291 Sum_probs=207.6
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC--CCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCe
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~--t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
+++..+.+|...|++++|+|++++|++|+.||.|+|||+. +++.+..+..+ ..+.++.|.+.. .+.+|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-CCCEEEEeccCCE
Confidence 4566788999999999999999999999999999999998 55666666543 345566776542 2478999999999
Q ss_pred EEEEeCCCCc--eEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCceeEEEEcC---
Q 007768 411 IVQWDMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHP--- 482 (590)
Q Consensus 411 I~iwD~~t~~--~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp--- 482 (590)
|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++..... ......|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999987 77788889999999999999 999999999999999999876322 222346888999999999
Q ss_pred ----------CCCEEEEEEcCCeEEEEEcCCceee-cccccccCcccccceEEEEEcCC---CCEEEEEcCCCcEEEEeC
Q 007768 483 ----------NTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 483 ----------~g~~la~~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~v~~spd---g~~l~sgs~dg~I~iwd~ 548 (590)
++.+|++++.|+.|++||++..... .....+.+| ...+.+++|+|+ +++|++++.||.|+|||+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999999999999999765432 223345555 567899999999 899999999999999999
Q ss_pred CCCe---EEEEE--ecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 549 KSCK---VFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 549 ~t~~---~~~~l--~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.++. ....+ ..|...|.+++|+| ++.+|++++.||.|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEe
Confidence 8864 22222 23788999999999 677999999999999996
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.1e-32 Score=293.29 Aligned_cols=273 Identities=11% Similarity=0.054 Sum_probs=204.1
Q ss_pred CcceEEEecCCCCCeeEEEEcCCC-C-------CEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKY-G-------HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL 359 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~-g-------~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~ 359 (590)
+.++..++. +.+.|.+|+|+|+. + ++||+|+.++.. ...+|+++.|+
T Consensus 123 ~~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------~~~~~~~~~la 177 (524)
T 2j04_B 123 GKRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------EPLNEHLEMFD 177 (524)
T ss_dssp CCSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred CCcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------Cccchhhhhhc
Confidence 455666665 78999999999983 1 789998866420 01368999999
Q ss_pred EEecCCeEEEEECCCCcEE----EEecC-CCcceEEEEecCC---CCCcEEEEEECCCeEEEEeCCCCce----------
Q 007768 360 TASYDKNIKYWDTETGQVI----RTFST-GKIPYVVKLNPDD---DKQNILLAGMSDKKIVQWDMNTKEI---------- 421 (590)
Q Consensus 360 s~s~Dg~I~vWd~~t~~~~----~~~~~-~~~~~~~~~~~~~---~~~~~lvsg~~dg~I~iwD~~t~~~---------- 421 (590)
+++.|++|+|||+.++++. ..+.. ...+..++|+|.. ....+|++++.||.|++||+.++..
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 9999999999999887642 22332 3456778888862 1246899999999999999987632
Q ss_pred -EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEE--EEcCCC-CEEEEEEcCCeEE
Q 007768 422 -TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI--SLHPNT-NWLAAQSLDNQIL 497 (590)
Q Consensus 422 -~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i--~~sp~g-~~la~~s~dg~I~ 497 (590)
...+.+|...|++++|+++ ..|++|+.||+|++||++++.........|...|.++ +|+|++ .+|++++.|++|+
T Consensus 258 p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp CSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred ceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 2467889999999999986 4899999999999999987643322234688999999 567887 8999999999999
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEE
Q 007768 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 577 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l 577 (590)
|||+++..... .+.+|.....+.+++|+|+++.|++++.|+.|++||++++.++..+.+|.+.|++|+|+| ++.+|
T Consensus 337 lWD~~~~~~~~---~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l 412 (524)
T 2j04_B 337 IFNPKDIATTK---TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMV 412 (524)
T ss_dssp EECGGGHHHHC---EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBC
T ss_pred EEECCCCCccc---ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeE
Confidence 99998765432 233443223466799999999999999999999999999999889999999999999999 67799
Q ss_pred EEEeCCCcEEEcC
Q 007768 578 ATCGWDGLIKYWD 590 (590)
Q Consensus 578 ~s~g~Dg~I~iWD 590 (590)
++|+.||+|+|||
T Consensus 413 ~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 413 LAGSADGSLIITN 425 (524)
T ss_dssp EEEETTTEEECCB
T ss_pred EEEECCCEEEEEe
Confidence 9999999999997
No 92
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=9.8e-30 Score=270.00 Aligned_cols=276 Identities=20% Similarity=0.318 Sum_probs=216.7
Q ss_pred cccccceeecCCccccccCCCccCCcceEEEe--cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc
Q 007768 264 TDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW--SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG 341 (590)
Q Consensus 264 ~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l--~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~ 341 (590)
.|..+|+|-. ...++++.+ .+|...|+||+|+|+ +++|++|+.||.|+|||+ ..+++++.+.+
T Consensus 123 ld~tV~lWd~-------------~tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~-~~~~~~~~~~~ 187 (420)
T 4gga_A 123 LDNSVYLWSA-------------SSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNMTS 187 (420)
T ss_dssp ETTEEEEEET-------------TTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEECC
T ss_pred eCCEEEEEEC-------------CCCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEc-CCCcEEEEEeC
Confidence 3677777743 233445544 578889999999999 999999999999999999 68899999999
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE-EEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~-~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~ 419 (590)
|...|.+++|+ +.+|++|+.|+.+++||...... +..+..+ .....+.+.+.+ .++++++.|+.|++|++.++
T Consensus 188 h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g---~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 188 HSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG---RHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEESSCC
T ss_pred CCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC---CeeeeeeccccceEEeeccc
Confidence 99999998885 67999999999999999987543 4444433 333445555543 68999999999999999876
Q ss_pred c----eEEEEcCcCCceeEEEEeCCCC-EEEE--EeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-
Q 007768 420 E----ITQEYDQHLGAVNTITFVDSNR-RFVT--SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS- 491 (590)
Q Consensus 420 ~----~~~~~~~h~~~V~~i~~~p~~~-~l~s--~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s- 491 (590)
+ .+.....|...|.+++|+|.+. .+++ |+.|++|++||+.++.....+. ....+.++.|+|+++.+++++
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEEC
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEe
Confidence 4 4567788999999999999765 4444 4579999999999998888774 456789999999999988876
Q ss_pred -cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEE
Q 007768 492 -LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG 566 (590)
Q Consensus 492 -~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 566 (590)
.|+.|+|||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||+|+|||+....+......+...+..
T Consensus 341 ~~d~~I~iwd~~~~~~v---~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKV---AELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp TTTCCEEEEETTTCCEE---EEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred cCCCEEEEEECCCCcEE---EEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence 6899999999887655 456677 578999999999999999999999999999887776666655544433
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.98 E-value=2.6e-30 Score=270.08 Aligned_cols=281 Identities=13% Similarity=0.137 Sum_probs=216.0
Q ss_pred CCCCCcccCCcc-eeecccccccccceeecCCccccccCCCccCCcceEEEe--cCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007768 245 GGEKGEHVEDKS-TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW--SGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 245 ~~~~~~~~~~~s-~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l--~gH~~~V~~l~~sp~~g~~L~sgs~D 321 (590)
+......+.+.. .+..++..|...+.|-.... +....+ .+|...|.+++|+|+++.+|++++.|
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-------------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-------------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-------------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 344445556655 67778888999999955422 233344 47999999999999548999999999
Q ss_pred CcEEEEecCCCCeeEEEeccC---CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGH---SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDD 397 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h---~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~ 397 (590)
+.|++||+. +..+..+..| ...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.. ...+.++.|++++
T Consensus 141 ~~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~- 216 (383)
T 3ei3_B 141 GATTLRDFS--GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRC- 216 (383)
T ss_dssp TEEEEEETT--SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSC-
T ss_pred CEEEEEECC--CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCC-
Confidence 999999994 4566666544 488999999999999999999999999999 5667766654 3455667777654
Q ss_pred CCcEEEEEECCCeEEEEeCCC----CceEEEEcCcCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeec---
Q 007768 398 KQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISE--- 469 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t----~~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--- 469 (590)
..+|++|+.|+.|++||+++ +.++..+ .|...|.+++|+| ++.+|++++.|+.|++||+++......+..
T Consensus 217 -~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 217 -DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp -TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred -CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 24899999999999999998 6666666 6999999999999 999999999999999999987665444431
Q ss_pred ---CCCCc----------eeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007768 470 ---PHMHS----------MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 470 ---~~~~~----------i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
.+... +..++++|++++ +++.|+.|++||+.++..+. .+.++.....+..++|+|++++|++
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~---~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH---QLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE---EECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee---eecCCCCCceEEEEEEecCccEEEE
Confidence 12222 333555555554 55689999999998876553 3444433566777899999999999
Q ss_pred EcCCCcEEEEeCCC
Q 007768 537 GDGEGKCWFWDWKS 550 (590)
Q Consensus 537 gs~dg~I~iwd~~t 550 (590)
|+ ||.|+|||+.+
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999864
No 94
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=271.03 Aligned_cols=331 Identities=14% Similarity=0.188 Sum_probs=224.1
Q ss_pred cCCCCCCcccCC-cceeecccccccccceeecCCccccccCCCccCCcceEEE-----ecCCCCCeeEEEEcCCCCCEEE
Q 007768 243 NAGGEKGEHVED-KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHT-----WSGHTKGVSAIRFFPKYGHLIL 316 (590)
Q Consensus 243 ~~~~~~~~~~~~-~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~-----l~gH~~~V~~l~~sp~~g~~L~ 316 (590)
+.+......+.+ ...+..+...|...+.|-........ .+....... ..+|...|++++|+|+++.+|+
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-----CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-----eEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 444555566666 67777888889999999655432110 000011111 1369999999999996588999
Q ss_pred EEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccC---CCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEE
Q 007768 317 SAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND---GTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKL 392 (590)
Q Consensus 317 sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspd---g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~ 392 (590)
+++.||.|++||+ ..+..+..+. +...+.++.|++. +.+|++++.|+.|++||+.+++.+..+..+ ..+.++.+
T Consensus 117 s~~~d~~i~iwd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~ 194 (408)
T 4a11_B 117 SSSFDKTLKVWDT-NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW 194 (408)
T ss_dssp EEETTSEEEEEET-TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEE
T ss_pred EEeCCCeEEEeeC-CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEE
Confidence 9999999999999 5777777665 7888999999984 459999999999999999999988887643 44566777
Q ss_pred ecCCCCCcEEEEEECCCeEEEEeCCCCc-eEEEE---------------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007768 393 NPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEY---------------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 393 ~~~~~~~~~lvsg~~dg~I~iwD~~t~~-~~~~~---------------~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
.+++ ..+|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++++|++++.||.|++|
T Consensus 195 ~~~~--~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 195 SPRY--DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp CSSC--TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCC--CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 7654 3589999999999999998775 44444 5688999999999999999999999999999
Q ss_pred ECCCCcEEEEeec----CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 457 EFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 457 dl~~~~~~~~~~~----~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
|+.+......... .....+........+..+++++.++.|++||+.++..+. .+.+| ...|.+++|+|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~---~~~~~--~~~v~~~~~s~~~~ 347 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT---MLKGH--YKTVDCCVFQSNFQ 347 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE---EECCC--SSCEEEEEEETTTT
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee---eeccC--CCeEEEEEEcCCCC
Confidence 9988765433221 111222222333445667777889999999998876553 44555 46788999999999
Q ss_pred EEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 533 FVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+|++|+.||.|++||+.+++++.....+.. ...+.+.....+.+++.|+.|++|+
T Consensus 348 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 348 ELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEEEEETTSCEEEEEECC----------------------------------------
T ss_pred EEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecC
Confidence 999999999999999999988776654432 2344554455677888899999995
No 95
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.1e-29 Score=263.69 Aligned_cols=280 Identities=11% Similarity=0.145 Sum_probs=206.8
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEE-EEEecCCe
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKN 366 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l-~s~s~Dg~ 366 (590)
..+.++++.+|...|++++|+|+ +.+|++|+.++ ++||++ .....+.... ...+..+++.++++.+ ++++.|+.
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNV-HPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp -----------CCCCCEEEECTT-SSEEEEECSSE-EEEEEE-TTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred ccCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEec-CCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccE
Confidence 44566778899999999999999 89999988775 789998 4555544432 2358889999988877 56778899
Q ss_pred EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEE
Q 007768 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
|+|||+.+++++..+.....+..+.+.+. .++++ .++.|++||+.++ +.+..+.. +...+++++ .+++
T Consensus 83 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la 151 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRIKVDAPVKDLFLSRE-----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLV 151 (355)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSS-----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEE
T ss_pred EEEEECCCCcEEEEEECCCceEEEEEcCC-----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEE
Confidence 99999999999998887666666666542 34443 4889999999988 66555543 445566776 5666
Q ss_pred E--EeCCCcEEEEECCCCc---------------E-EEEeecCCCCceeEEEEcCCCCEEEEEEcCCe-EEEEEcCCcee
Q 007768 446 T--SSDDKSLRVWEFGIPV---------------V-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQ 506 (590)
Q Consensus 446 s--~s~Dg~I~iwdl~~~~---------------~-~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~-I~iwd~~~~~~ 506 (590)
+ |+.+|.|++||+.... + +..+ ..|...|.+++|+|++.+|++++.|++ |++||+.++..
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEESSCTTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 6 5889999999998754 1 3333 469999999999999999999999998 99999998766
Q ss_pred eccccccc-C-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEE--EE------------------Ee---cCC
Q 007768 507 LNKKKRFA-G-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF--RT------------------LK---CHE 561 (590)
Q Consensus 507 ~~~~~~~~-~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~--~~------------------l~---~h~ 561 (590)
+.. +. + | ...|.+++|+|+|++|++|+.||.|+|||+..+... .. +. .+.
T Consensus 231 ~~~---~~~g~h--~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 231 VRE---FRRGLD--RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp EEE---EECTTC--CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred EEE---EEcCCC--CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 533 33 3 4 467899999999999999999999999999764311 11 11 111
Q ss_pred CcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 562 GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 562 ~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.....++|++ ++.+|++++.||.+++|+
T Consensus 306 ~~~~~~a~~~-d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 306 VRGCKIAWIS-ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CCCCEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred CCceEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence 2236689999 677999999999999985
No 96
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-29 Score=252.77 Aligned_cols=284 Identities=17% Similarity=0.237 Sum_probs=228.5
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007768 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg 322 (590)
+.+.+....+ ....+..+...|...+.|-. ...++...+.+|...|.+++|+|+ +.+|++|+.||
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~-------------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 81 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSK-------------DDQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDT 81 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETTSEEEEEEE-------------SSSEEEEEEEECSSCEEEEEEETT-TTEEEEEETTS
T ss_pred CCCCcEEEEe-cCCCEEEEEEcCCcEEEEEC-------------CCCEEEEEeecCCccEEEEEECCC-CCEEEEecCCC
Confidence 3334444445 44445667778888888854 234567888899999999999999 99999999999
Q ss_pred cEEEEecCCC--CeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCCCCC
Q 007768 323 KVKIWDVVNS--GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQ 399 (590)
Q Consensus 323 ~I~iWd~~~~--~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~ 399 (590)
.|++|++... .+.+..+.+|...|.+++| ++++|++++.||.|++|| .++.+..+..+ .....+.+.+.. .
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~--~ 155 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS--E 155 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETT--T
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCC--C
Confidence 9999998543 2667888999999999999 578999999999999999 56666666543 344566666632 3
Q ss_pred cEEEEEECCCeEEEEeCCCCceEEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEE
Q 007768 400 NILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 478 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i 478 (590)
.++++++.|+.|++|| ..+....+.. |...|.+++|+|++. |++++.|+.|++||++....+..+. .|...|.++
T Consensus 156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~ 231 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCI 231 (313)
T ss_dssp TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEE
T ss_pred CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEE
Confidence 6899999999999999 4566677776 899999999999987 9999999999999999998887775 588899999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe
Q 007768 479 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 479 ~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
+|+|++ .|++++.||.|++||+.++..... +..+ ...+.+++|+|+++ +++++.||.|++||+.+++.+....
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~---~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKENGSLKQV---ITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTTCCEEEE---EECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEecCC-CEEEEecCCEEEEEECCCCceeEE---Eecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 999999 588999999999999988765533 3444 45788999999998 5578899999999999887765543
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.3e-30 Score=269.00 Aligned_cols=280 Identities=18% Similarity=0.237 Sum_probs=224.4
Q ss_pred eeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC---
Q 007768 257 TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--- 333 (590)
Q Consensus 257 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--- 333 (590)
.+..+...|...+.|-...... ....+..+.+|.+.|++++|+|.++.+|++|+.||.|+||++....
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~---------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGR---------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEE---------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred EEEEEEcCCCEEEEEECccCCC---------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 3445567788888885533211 0123456789999999999999439999999999999999994332
Q ss_pred ---eeEEEeccCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCcEEEEec---CCCcceEEEEecCCCCCcEEEEEE
Q 007768 334 ---KCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGM 406 (590)
Q Consensus 334 ---~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~ 406 (590)
.++..+.+|...|.+++|+|++ ++|++++.||.|++||+.+++.+..+. ....+.++.|++++ .+|++++
T Consensus 119 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~ 195 (402)
T 2aq5_A 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG---ALICTSC 195 (402)
T ss_dssp CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS---SCEEEEE
T ss_pred ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC---CEEEEEe
Confidence 5788899999999999999998 699999999999999999999998883 33445677777744 6799999
Q ss_pred CCCeEEEEeCCCCceEEEE-cCcCCc-eeEEEEeCCCCEEEEE---eCCCcEEEEECCCCcE-EEEeecCCCCceeEEEE
Q 007768 407 SDKKIVQWDMNTKEITQEY-DQHLGA-VNTITFVDSNRRFVTS---SDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISL 480 (590)
Q Consensus 407 ~dg~I~iwD~~t~~~~~~~-~~h~~~-V~~i~~~p~~~~l~s~---s~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~~ 480 (590)
.|+.|++||+++++.+..+ ..|.+. +.++.|+|++.+|+++ +.|+.|++||++.... +......+...+.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999988 788776 9999999999999999 7999999999987653 33333357778999999
Q ss_pred cCCCCEEEEEE-cCCeEEEEEcCCcee-ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE
Q 007768 481 HPNTNWLAAQS-LDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 481 sp~g~~la~~s-~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~ 553 (590)
+|++.+|++++ .|+.|++|++.+... +..+..+. ....+.+++|+|++.++++ .++.+++|++.++.+
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99999997554 799999999987653 32222222 3467889999999998875 466999999988765
No 98
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-30 Score=264.92 Aligned_cols=270 Identities=8% Similarity=0.034 Sum_probs=207.0
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC---------CCcE
Q 007768 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE---------TGQV 377 (590)
Q Consensus 307 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~---------t~~~ 377 (590)
++++ +.+|++|+.||.|++||+ ..++.+..+. ...|.++.|+|+ +++++.|+.|++|+.. +++.
T Consensus 44 ~~~d-~~~l~sg~~Dg~v~iwd~-~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYD-KWVCMCRCEDGALHFTQL-KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEE-EEEEEEEEETTEEEEEEE-SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCC-CCEEEEECCCCcEEEEEC-CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455 789999999999999999 5777777765 567888999988 9999999999999665 6666
Q ss_pred EEEecCCCc--ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc-CcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007768 378 IRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 378 ~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
+..+...+. +.++.+++.. .+.++++|+.||.|++||+++++.+..+. .|...|++++|+|++.+|++|+.||.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEV-NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCC-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 666655544 4555555511 23689999999999999999998877664 4556899999999999999999999999
Q ss_pred EEECCCCcEE-EEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007768 455 VWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 455 iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
+||++++..+ ..+...|...|.+++|+|++.+|++++ ++.|++||++..........+..+.......+++|+|+|++
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 9999998877 555444889999999999999999999 55999999998765544444333322211146999999999
Q ss_pred EEEEcC-CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCC--CCCEEEEEeCCCcEEEc
Q 007768 534 VMSGDG-EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL--EQSKVATCGWDGLIKYW 589 (590)
Q Consensus 534 l~sgs~-dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~--~~~~l~s~g~Dg~I~iW 589 (590)
|++++. ++.|+||++......... .++..+.|.++ +...|++++.||.+.++
T Consensus 275 l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 999988 999999999765443333 45667777762 34467888888888765
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=293.39 Aligned_cols=257 Identities=21% Similarity=0.349 Sum_probs=208.3
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCC-CCeeEEEeccCCCCeEEEEEccC--CCEEEEEecCCeEE
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIK 368 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~I~ 368 (590)
+.++.+|.+.|++++|+|+ +.+|++|+.||.|+||++.. ....+..+.+|...|++++|+++ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4578899999999999999 89999999999999999942 45678889999999999999987 99999999999999
Q ss_pred EEECCCCc--EEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEeC----
Q 007768 369 YWDTETGQ--VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVD---- 439 (590)
Q Consensus 369 vWd~~t~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~--~~~~~~~~h~~~V~~i~~~p---- 439 (590)
+||+.+++ .+..+. ....+.++.++++. .+.++++|+.||.|++||++++ .....+..|...|.++.|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCC-CCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 99999986 444443 34456677777752 1368999999999999999987 34556678999999999999
Q ss_pred ---------CCCEEEEEeCCCcEEEEECCCCc---EEEEeecCCCCceeEEEEcCC---CCEEEEEEcCCeEEEEEcCCc
Q 007768 440 ---------SNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPN---TNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 440 ---------~~~~l~s~s~Dg~I~iwdl~~~~---~~~~~~~~~~~~i~~i~~sp~---g~~la~~s~dg~I~iwd~~~~ 504 (590)
++..|++++.||.|++||++... ........|...|.+++|+|+ +.+|++++.||.|++||+.+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 58999999999999999998763 222233468899999999999 899999999999999999875
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
.................+.+++|+|+|++|++|+.||.|++|++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 4222222222222356788899999999999999999999999874
No 100
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.7e-31 Score=274.17 Aligned_cols=243 Identities=19% Similarity=0.200 Sum_probs=195.2
Q ss_pred eccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC--cEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEe
Q 007768 339 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD 415 (590)
+..|...|++++|+|++++|++|+.|+.|+|||+.++ +.+..+..+ ..+.++.|++++ .+|++|+.|+.|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---NRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---CCEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---CEEEEEeCCCeEEEEE
Confidence 4456789999999999999999999999999999988 566666543 345677777754 5799999999999999
Q ss_pred CCCCc---eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE---EEEeecCCCCceeEEEEcCCCCEEEE
Q 007768 416 MNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 416 ~~t~~---~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~g~~la~ 489 (590)
+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||++.... ...+..+|...|.+++|+|++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 99887 6777888999999999999999999999999999999988763 55565558999999999999999999
Q ss_pred EEcCCeEEEEEcCCce---------------eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE-
Q 007768 490 QSLDNQILIYSTRERF---------------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV- 553 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~---------------~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~- 553 (590)
++.|+.|++||+.... .......+ +| ...+.+++|+|+|++|++|+.||.|++||+.+++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS--GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC--SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC--CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 9999999999985321 01112223 44 56799999999999999999999999999999887
Q ss_pred ---EEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 554 ---FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 554 ---~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+..+..|...|.+++|+| ++.+|++++.|+.+ +|
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~ 277 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LL 277 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EE
T ss_pred ceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EE
Confidence 888999999999999999 67788888766666 55
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2e-29 Score=268.64 Aligned_cols=247 Identities=19% Similarity=0.330 Sum_probs=204.4
Q ss_pred EEeccCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCC----------CcEEEEecC-CCcceEEEEecCCCCCcEEEE
Q 007768 337 RTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTET----------GQVIRTFST-GKIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvs 404 (590)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ ...+..+.. ...+.+++|++.+. .+|++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN--GYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST--TEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC--CeEEE
Confidence 456689999999999997 78999999999999999986 455555543 34456777877543 48999
Q ss_pred EECCCeEEEEeCCCCce-------EEEEcCcCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCC---cEEEEeecCCCC
Q 007768 405 GMSDKKIVQWDMNTKEI-------TQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIP---VVIKYISEPHMH 473 (590)
Q Consensus 405 g~~dg~I~iwD~~t~~~-------~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~---~~~~~~~~~~~~ 473 (590)
|+.||.|++||+.++.. ...+..|...|.+++|+| ++.+|++++.|+.|++||++.. ..+..+. .|..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~ 278 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTA 278 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCC
Confidence 99999999999987321 456778999999999999 6789999999999999999876 3444443 6888
Q ss_pred ceeEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCC-
Q 007768 474 SMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKS- 550 (590)
Q Consensus 474 ~i~~i~~sp~g~-~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t- 550 (590)
.|.+++|+|++. +|++++.||.|++||++.... ....+.+| ...+.+++|+|+++ +|++++.||.|+|||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--CeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 999999999987 789999999999999987422 23444555 56789999999995 699999999999999987
Q ss_pred -------------CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 551 -------------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 -------------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..++..+.+|...|.+++|+|++..+|++++.||.|+||+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 3677788889999999999995544999999999999996
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4.4e-30 Score=274.04 Aligned_cols=286 Identities=13% Similarity=0.123 Sum_probs=209.6
Q ss_pred CCcccCCc-ceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 248 KGEHVEDK-STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 326 (590)
Q Consensus 248 ~~~~~~~~-s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~i 326 (590)
....++++ ..+++++..|..+++|-..... ...+..+.+|.+.|++|+|+|.++++|++|+.||+|+|
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCS-----------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 33455543 3466788889999999443221 23445667999999999999966899999999999999
Q ss_pred EecCCCCeeEEEecc--CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEE
Q 007768 327 WDVVNSGKCMRTYMG--HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 327 Wd~~~~~~~~~~~~~--h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lv 403 (590)
||+ ........... +...+.+++|+|++.+|++|+.||.|++||++.. .+..+.. ...+.++.|+|.. ..+|+
T Consensus 192 wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~--~~~~~ 267 (435)
T 4e54_B 192 QDF-KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCC--DWFLA 267 (435)
T ss_dssp EET-TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTC--SSEEE
T ss_pred eec-cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCC--ceEEE
Confidence 999 34333322322 3446789999999999999999999999999754 4444443 3445566676654 46899
Q ss_pred EEECCCeEEEEeCCCCceEEE---EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCC------Cc
Q 007768 404 AGMSDKKIVQWDMNTKEITQE---YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM------HS 474 (590)
Q Consensus 404 sg~~dg~I~iwD~~t~~~~~~---~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~------~~ 474 (590)
+|+.|+.|++||+++.+.... ..+|...|++++|+|++.+|++++.||.|+|||+........+.. |. ..
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~ 346 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP-HPHRHFQHLT 346 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC-CCCCCCSSSC
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec-ccccccccce
Confidence 999999999999988754333 357899999999999999999999999999999998776655532 21 12
Q ss_pred eeEEEEcCCCCEEEEEEc------------CCeEEEEEcCCceeecccccccCcccccceEEE-EEcCCCCEEEEEcCCC
Q 007768 475 MPSISLHPNTNWLAAQSL------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVMSGDGEG 541 (590)
Q Consensus 475 i~~i~~sp~g~~la~~s~------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v-~~spdg~~l~sgs~dg 541 (590)
+..+.|+|++.++++++. ++.|++||..++..+..+ ..+| ...|.++ +|+|+|++|++|+ |+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l--~~~~--~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL--YDPE--SSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE--CCSS--CCCCCCEEEECTTSSCEEEEC-SS
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE--eCCC--CCcEEEEEEECCCCCEEEEEc-CC
Confidence 345678888877777653 357999999887655332 2233 2344455 7999999999886 78
Q ss_pred cEEEEeCCCCeEE
Q 007768 542 KCWFWDWKSCKVF 554 (590)
Q Consensus 542 ~I~iwd~~t~~~~ 554 (590)
.|+||++++++..
T Consensus 422 ~i~iW~~~~gk~r 434 (435)
T 4e54_B 422 HILIWSQQEARTR 434 (435)
T ss_dssp EEEECCCC-----
T ss_pred cEEEEECCcCeee
Confidence 9999999988754
No 103
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-28 Score=261.65 Aligned_cols=285 Identities=16% Similarity=0.219 Sum_probs=232.7
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE-----EeccCCCCeEEEEEccCCCEEEEEecC
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-----TYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-----~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
+.+..+..+. .+.+++|+|+ +.++++++.++.|++||+ ..++.+. .+.+|...|.+++|++++.++++++.|
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~-~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDN-TRLAIPLLEDEGMDVLDI-NSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSS-SEEEEEBTTSSSEEEEET-TTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred eEEEEEcCCC-CceEEEEeCC-CeEEEEeCCCCeEEEEEC-CCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 3455666554 4569999995 889999999999999999 5677666 345789999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007768 365 KNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
+.|++||+.+++.+..+.. ...+..+.+.+++. .++++++.++.|++||+++++.+..+..+ ..+.+++|+|++++
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD--LVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKE 267 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT--EEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSE
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC--EEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCE
Confidence 9999999999999888864 44566778877543 45566668999999999999888887654 56999999999999
Q ss_pred EEEEe--------CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEE-EEEEcCCeEEEEEcCCceeeccccccc
Q 007768 444 FVTSS--------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 444 l~s~s--------~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l-a~~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
|++++ .|+.|++||+.+...+..+. +...+.+++|+|+++.+ ++++.++.|++||+.++.......
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--- 342 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--- 342 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---
Confidence 99888 58899999999887776652 44578899999999755 556889999999998766543332
Q ss_pred CcccccceEEEEEcCCCCEEEEEcC---------------CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEE
Q 007768 515 GHIVAGYACQVNFSPDGRFVMSGDG---------------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~---------------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
+ ...+..++|+|+|++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+| ++.+|++
T Consensus 343 -~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~ 417 (433)
T 3bws_A 343 -V--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSP-DNRYLVI 417 (433)
T ss_dssp -C--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSCEEEE
T ss_pred -C--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcC-CCCEEEE
Confidence 1 345778999999999988876 579999999999999998864 4689999999 6677777
Q ss_pred Ee-CCCcEEEcC
Q 007768 580 CG-WDGLIKYWD 590 (590)
Q Consensus 580 ~g-~Dg~I~iWD 590 (590)
++ .|+.|++||
T Consensus 418 ~~~~d~~i~v~~ 429 (433)
T 3bws_A 418 SDFLDHQIRVYR 429 (433)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCeEEEEE
Confidence 76 499999996
No 104
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.3e-31 Score=280.40 Aligned_cols=266 Identities=12% Similarity=0.149 Sum_probs=214.2
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEe-ccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCC---Cc---EE
Q 007768 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY-MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET---GQ---VI 378 (590)
Q Consensus 307 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t---~~---~~ 378 (590)
|+|+ +..+++++ .|+. .++++..+ .+|...|++++|+| ++++|++|+.||.|+|||+.+ +. ..
T Consensus 35 f~~~-~~~~~~~~------~w~~--~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 35 FGPI-QEIVRSPN------MGNL--RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GCCC-CCCCCCCC------GGGC--CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred cCCc-cccccccc------cccc--cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee
Confidence 5666 66666554 4875 67888888 89999999999999 999999999999999999876 33 33
Q ss_pred EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC---CCceEEEEcC------------cCCceeEEE--EeCCC
Q 007768 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYDQ------------HLGAVNTIT--FVDSN 441 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---t~~~~~~~~~------------h~~~V~~i~--~~p~~ 441 (590)
..+.....+.+++|.+++ .+|++|+.||.|++||+. +++....+.. +...+.++. +++++
T Consensus 106 ~~~~h~~~v~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 106 LTYDCSSTVTQITMIPNF---DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp EEEECSSCEEEEEECTTS---SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred eeccCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 444455667778887643 689999999999999995 5554443322 455677776 55789
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecC-CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~-~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
.+|++++.|+.|++||+++...+..+... |...|.+++|+|++.+|++++.||.|++||++.+..+..... .+ ..
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~--~~ 258 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GD--HA 258 (437)
T ss_dssp EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TT--CE
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CC--CC
Confidence 99999999999999999999988888654 788999999999999999999999999999998665533221 23 34
Q ss_pred ceEEEEEc----CCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC--------------------------CCcEEEEEEc
Q 007768 521 YACQVNFS----PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH--------------------------EGVCIGCEWH 570 (590)
Q Consensus 521 ~v~~v~~s----pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h--------------------------~~~V~~v~~s 570 (590)
.|.+++|+ |++.+|++|+.||.|++||+.+++++..+.+| ...|.+++|+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 68888555 56889999999999999999999999888855 3457788888
Q ss_pred CCCCCEEEEEeCCCcEEEcC
Q 007768 571 PLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 571 p~~~~~l~s~g~Dg~I~iWD 590 (590)
+ +.+|++|+.||.|++||
T Consensus 339 ~--~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 339 N--DKILLTDEATSSIVMFS 356 (437)
T ss_dssp T--TEEEEEEGGGTEEEEEE
T ss_pred C--ceEEEecCCCCeEEEEE
Confidence 3 47999999999999997
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.4e-29 Score=269.82 Aligned_cols=255 Identities=17% Similarity=0.288 Sum_probs=209.2
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC---------CeeEEEeccCCCCeEEEEEccCCC-EEEEE
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---------GKCMRTYMGHSKAVRDISFCNDGT-KFLTA 361 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~---------~~~~~~~~~h~~~V~~l~fspdg~-~l~s~ 361 (590)
+....+|.+.|++++|+|+++.+|++++.||.|+||++... ...+..+.+|...|.+++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 34566899999999999976789999999999999999431 577888999999999999999988 99999
Q ss_pred ecCCeEEEEECCCCcE-------EEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC---ceEEEEcCcCC
Q 007768 362 SYDKNIKYWDTETGQV-------IRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLG 430 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~---~~~~~~~~h~~ 430 (590)
+.||.|++||+.++.. ...+. ....+.++.|++. ...+|++++.|+.|++||++++ ..+..+..|..
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~--~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL--HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS--CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC--CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 9999999999987422 22232 2334556667664 3479999999999999999987 57778889999
Q ss_pred ceeEEEEeCCCC-EEEEEeCCCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCCC-EEEEEEcCCeEEEEEcCCceee
Q 007768 431 AVNTITFVDSNR-RFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 431 ~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~-~la~~s~dg~I~iwd~~~~~~~ 507 (590)
.|++++|+|++. .|++++.||.|++||++.. ..+..+. .|...|.+++|+|++. +|++++.|+.|++||+......
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 999999999887 6889999999999999874 4444443 5888999999999985 7999999999999999762211
Q ss_pred -----------cccccccCcccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCC
Q 007768 508 -----------NKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 508 -----------~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~ 551 (590)
.....+.+| ...+.+++|+|++. +|++++.||.|+||++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 222334455 56789999999999 8999999999999998653
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.4e-28 Score=255.62 Aligned_cols=265 Identities=17% Similarity=0.196 Sum_probs=220.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEE-EEEecCCeEEEEECCCCcEEEEecCCCcceEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 390 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~ 390 (590)
+.++++++.|+.|++||+ ..++++..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+..+..+
T Consensus 2 ~~l~vs~~~d~~v~v~d~-~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDV-TSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEET-TTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred CEEEEEcCCCCEEEEEEC-CCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce
Confidence 357889999999999999 6788888888775 48999999999977 67778999999999999999999888888888
Q ss_pred EEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeec
Q 007768 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~ 469 (590)
++++++. .+++++..++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+.++..+..+..
T Consensus 80 ~~spdg~--~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 80 AVSPDGK--QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp EECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EECCCCC--EEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 8887653 45566667899999999999988887654 568999999999977 6888899999999999888777643
Q ss_pred CCCCceeEEEEcCCCCEE-EEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc---CCCcEEE
Q 007768 470 PHMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWF 545 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~l-a~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~dg~I~i 545 (590)
...+.+++|+|++++| ++++.++.|++||+.+........ . ...+.+++|+|+|++|++++ .++.|++
T Consensus 157 --~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 157 --GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---V---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp --CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---C---SSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred --CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---c---CCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 3567999999999987 566778999999998875543322 1 24567899999999999888 6899999
Q ss_pred EeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 546 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 546 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
||+.+++++..+..|.. +.+++|+|++..++++++.|+.|++||
T Consensus 229 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 229 IDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 99999999999987764 789999994443447888999999997
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=272.85 Aligned_cols=246 Identities=20% Similarity=0.359 Sum_probs=198.4
Q ss_pred cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc-----------EEEEecCC-------------CcceEEEEecCC
Q 007768 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----------VIRTFSTG-------------KIPYVVKLNPDD 396 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-----------~~~~~~~~-------------~~~~~~~~~~~~ 396 (590)
.|.+.|++++|+|+|++|++|+.||.|+|||+.+++ ++..+..+ ..+..++|.+..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999999877 45666544 446778888764
Q ss_pred CCCcEEEEEECCCeEEEEeCCCCceE---------------------------------------EE-EcCcCCceeEEE
Q 007768 397 DKQNILLAGMSDKKIVQWDMNTKEIT---------------------------------------QE-YDQHLGAVNTIT 436 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~iwD~~t~~~~---------------------------------------~~-~~~h~~~V~~i~ 436 (590)
. ..+|++++.|+.|++||+.++... .. ..+|...|.+++
T Consensus 106 ~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 N-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp S-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred C-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 2 257999999999999999765432 12 367999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC-cEEEEe------ecCCCCceeEEEEcCCC-CEEEEEEcCCeEEEEEcCCceee-
Q 007768 437 FVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYI------SEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQL- 507 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~------~~~~~~~i~~i~~sp~g-~~la~~s~dg~I~iwd~~~~~~~- 507 (590)
|+|++++|+++ .|+.|++||++.. ..+..+ ...|...|.+++|+|++ .+|++++.||.|++||+++....
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 7999999999843 333322 33578889999999998 99999999999999999876531
Q ss_pred cccccccCccc----------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeEEEEEecCCCc-------------
Q 007768 508 NKKKRFAGHIV----------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGV------------- 563 (590)
Q Consensus 508 ~~~~~~~~~~~----------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~------------- 563 (590)
.....+.++.. ...+.+++|+|+|++|++++. |.|+|||+.+ ++++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 11234444421 137899999999999999999 9999999997 8999999988642
Q ss_pred --EEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 564 --CIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 564 --V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+..++|+| ++.+|++|+.||.|+|||
T Consensus 343 ~~~~~~~~s~-~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 343 FDKFECCWNG-SDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp GCCCCEEECT-TSSEEEEECSTTEEEEEE
T ss_pred ccceEEEECC-CCCEEEEeccCCEEEEEE
Confidence 33499999 678999999999999997
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.8e-29 Score=265.20 Aligned_cols=282 Identities=18% Similarity=0.361 Sum_probs=214.2
Q ss_pred eecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE
Q 007768 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 337 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~ 337 (590)
+..++..|..++.|-. ...+++.++.+|...|++++| + +++|++|+.||.|++||+ ..++++.
T Consensus 145 ~l~~g~~dg~i~iwd~-------------~~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~-~~~~~~~ 207 (435)
T 1p22_A 145 KIVSGLRDNTIKIWDK-------------NTLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDV-NTGEMLN 207 (435)
T ss_dssp EEEEEESSSCEEEEES-------------SSCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEES-SSCCEEE
T ss_pred EEEEEeCCCeEEEEeC-------------CCCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEEC-CCCcEEE
Confidence 4455566777777732 345678899999999999999 4 789999999999999999 6788999
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE--EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEe
Q 007768 338 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD 415 (590)
.+.+|...|.+++|+ +..|++|+.||.|++||+.++..+. ....++...+.++.++ +.++++|+.||.|++||
T Consensus 208 ~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWN 282 (435)
T ss_dssp EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEE
Confidence 999999999999997 4599999999999999999887542 2223343444444442 36899999999999999
Q ss_pred CCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCe
Q 007768 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 495 (590)
Q Consensus 416 ~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~ 495 (590)
+++++.+..+..|...|.++.+. +.+|++++.||.|++||++++..+..+. .|...|.++++ ++.+|++++.||.
T Consensus 283 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~ 357 (435)
T 1p22_A 283 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGK 357 (435)
T ss_dssp TTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred CCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCc
Confidence 99999999999999999999995 6799999999999999999998887775 58889999998 7889999999999
Q ss_pred EEEEEcCCceeec------ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEE
Q 007768 496 ILIYSTRERFQLN------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 496 I~iwd~~~~~~~~------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
|++||+....... ....+.+| ...|.+++| ++.+|++|+.||.|++||+.+......... ..+..++.|
T Consensus 358 i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 432 (435)
T 1p22_A 358 IKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYTY 432 (435)
T ss_dssp EEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCSSSEEEEEC----------------------
T ss_pred EEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCccceee
Confidence 9999987653110 22344555 456778888 788999999999999999988766544432 234455555
Q ss_pred cC
Q 007768 570 HP 571 (590)
Q Consensus 570 sp 571 (590)
.+
T Consensus 433 ~~ 434 (435)
T 1p22_A 433 IS 434 (435)
T ss_dssp --
T ss_pred ec
Confidence 43
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2e-29 Score=258.11 Aligned_cols=241 Identities=12% Similarity=0.153 Sum_probs=203.9
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc----EEEEecCCCcceEEEEecCCCCCc-EEEEEECCCeE
Q 007768 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQN-ILLAGMSDKKI 411 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~----~~~~~~~~~~~~~~~~~~~~~~~~-~lvsg~~dg~I 411 (590)
....+|...|++++|+|++++|++++.|+.|++|++.++. ..........+.+++|.+++ . +|++|+.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT---DLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS---SEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC---CcEEEEEcCCCeE
Confidence 3446899999999999999999999999999999999887 55555556667788888753 7 89999999999
Q ss_pred EEEeC-CCCceEEEEcC--cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC---------CcEEEEeecCCCCceeEEE
Q 007768 412 VQWDM-NTKEITQEYDQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---------PVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 412 ~iwD~-~t~~~~~~~~~--h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~---------~~~~~~~~~~~~~~i~~i~ 479 (590)
++||+ .+++. ..+.. |...|.+++|+| +.+|++++.|+.|++||++. ...+..+ .+...+.+++
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~ 157 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTMD 157 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEEE
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE--eeCCceEEEE
Confidence 99999 87755 67778 999999999999 99999999999999999876 4444433 3778899999
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCC------
Q 007768 480 LHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSC------ 551 (590)
Q Consensus 480 ~sp~g~~la~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~t~------ 551 (590)
|+|++ |++++.++.|++||++. ...... .....+ ...+.+++|+| ++++|++|+.+|.|++|++...
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGT-IEESGL--KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCE-EEECSC--SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccce-eeecCC--CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 99887 99999999999999987 432211 112222 45688999999 9999999999999999999887
Q ss_pred eEEEEEecCCC---------cEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 552 KVFRTLKCHEG---------VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ~~~~~l~~h~~---------~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+....+..|.. .|.+++|+| ++.+|++++.||.|++||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEE
T ss_pred ccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEc
Confidence 88888998865 999999999 677999999999999997
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4.9e-28 Score=244.97 Aligned_cols=262 Identities=20% Similarity=0.327 Sum_probs=211.9
Q ss_pred cccccceeecCCccccccCCCccCCcceEEEe--cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc
Q 007768 264 TDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW--SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG 341 (590)
Q Consensus 264 ~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l--~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~ 341 (590)
.|..+|.|-. ...++++++ .+|...|++|+|+|+ +++|++|+.||+|+||++ ..++++..+.+
T Consensus 43 ~D~tV~iWd~-------------~tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~-~~~~~~~~~~~ 107 (318)
T 4ggc_A 43 LDNSVYLWSA-------------SSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNMTS 107 (318)
T ss_dssp ETTEEEEEET-------------TTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEEEEEEC
T ss_pred eCCEEEEEEC-------------CCCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeec-CCceeEEEecC
Confidence 4777888833 234555555 468889999999999 999999999999999999 78899999999
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE-EEecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI-RTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~-~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~ 419 (590)
|...+.++.+ ++..|++++.++.+++|+....... ..+..+ .....+.+.+.+ .++++++.|+.|++||++++
T Consensus 108 h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 108 HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG---RHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEESSCB
T ss_pred ccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC---CEEEEEecCcceeEEECCCC
Confidence 9998887665 5679999999999999999877544 333332 333444454433 68999999999999999987
Q ss_pred c----eEEEEcCcCCceeEEEEeCCCCEE---EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-
Q 007768 420 E----ITQEYDQHLGAVNTITFVDSNRRF---VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS- 491 (590)
Q Consensus 420 ~----~~~~~~~h~~~V~~i~~~p~~~~l---~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s- 491 (590)
+ .......|.+.|.++.++|.+..+ ++++.++.|++||.......... .+...+..+.|+|.+..+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEEC
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeeeeeecccccceEEEEE
Confidence 5 345566788999999999977643 45678899999999988877665 4667899999999999888765
Q ss_pred -cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007768 492 -LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 492 -~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~ 552 (590)
.|+.|++||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||+|+|||+....
T Consensus 261 ~~d~~i~iwd~~~~~~~---~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKV---AELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTTCCEEEEETTTCCEE---EEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred cCCCEEEEEECCCCcEE---EEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 7899999999987655 456677 5779999999999999999999999999987643
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1e-27 Score=250.86 Aligned_cols=276 Identities=15% Similarity=0.158 Sum_probs=224.7
Q ss_pred cccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEecCCCCeeEEE
Q 007768 260 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVVNSGKCMRT 338 (590)
Q Consensus 260 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L-~sgs~Dg~I~iWd~~~~~~~~~~ 338 (590)
.....|...+.|-. ...++++.+.+|.. +.+++|+|+ +.+| ++++.|+.|++||+ ..++++..
T Consensus 6 vs~~~d~~v~v~d~-------------~~~~~~~~~~~~~~-~~~~~~s~d-g~~l~~~~~~d~~i~v~d~-~~~~~~~~ 69 (391)
T 1l0q_A 6 IANSESDNISVIDV-------------TSNKVTATIPVGSN-PMGAVISPD-GTKVYVANAHSNDVSIIDT-ATNNVIAT 69 (391)
T ss_dssp EEETTTTEEEEEET-------------TTTEEEEEEECSSS-EEEEEECTT-SSEEEEEEGGGTEEEEEET-TTTEEEEE
T ss_pred EEcCCCCEEEEEEC-------------CCCeEEEEeecCCC-cceEEECCC-CCEEEEECCCCCeEEEEEC-CCCeEEEE
Confidence 44556667777733 23466778887765 899999999 6655 77779999999999 67888888
Q ss_pred eccCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC
Q 007768 339 YMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 417 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~ 417 (590)
+..+. .|.+++|+|++++|++++ .++.|++||+.+++.+..+..+..+..+.+++++. .++++++.++.|++||+.
T Consensus 70 ~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~ 146 (391)
T 1l0q_A 70 VPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGK--KLYVTNNGDKTVSVINTV 146 (391)
T ss_dssp EECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS--EEEEEETTTTEEEEEETT
T ss_pred EECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCC--EEEEEeCCCCEEEEEECC
Confidence 77665 899999999999886554 67999999999999999888877777888887653 455788889999999999
Q ss_pred CCceEEEEcCcCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE---cC
Q 007768 418 TKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---LD 493 (590)
Q Consensus 418 t~~~~~~~~~h~~~V~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s---~d 493 (590)
+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+++......+. +...+.+++|+|++++|++++ .+
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 147 TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYF 223 (391)
T ss_dssp TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCC
Confidence 99988888765 456999999999887 577889999999999988777664 456789999999999999988 68
Q ss_pred CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE-EEEcCCCcEEEEeCCCCeEEEEEecCCCc
Q 007768 494 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV-MSGDGEGKCWFWDWKSCKVFRTLKCHEGV 563 (590)
Q Consensus 494 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l-~sgs~dg~I~iwd~~t~~~~~~l~~h~~~ 563 (590)
+.|++||+.++..+... ..+ ..+.+++|+|+|++| ++++.++.|++||+.+++++..+..|..+
T Consensus 224 ~~v~~~d~~~~~~~~~~---~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 224 NTVSMIDTGTNKITARI---PVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp CEEEEEETTTTEEEEEE---ECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CcEEEEECCCCeEEEEE---ecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 99999999887654332 222 246789999999987 67788999999999999999999877654
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=9.4e-29 Score=251.91 Aligned_cols=300 Identities=15% Similarity=0.236 Sum_probs=214.2
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCC-CCCEEEEEeC
Q 007768 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGM 320 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~-~g~~L~sgs~ 320 (590)
++.+.+....+.+...+..+...|...|.|-..... ...+++..+.+|...|++++|+|. ++.+|++|+.
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT---------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS---------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC---------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 344455556677777788888899999999654321 123567889999999999999994 2899999999
Q ss_pred CCcEEEEecCCCC---------eeEEEeccCCCCeEEEEEccC--CCEEEEEecCCeEEEEECCCCcEEEEec-------
Q 007768 321 DTKVKIWDVVNSG---------KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFS------- 382 (590)
Q Consensus 321 Dg~I~iWd~~~~~---------~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~I~vWd~~t~~~~~~~~------- 382 (590)
||.|+|||+. .+ +.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+.
T Consensus 80 dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 80 DKTVKLWEED-PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp TSCEEEEEEC-TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred CCeEEEEecC-CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 9999999994 43 668888999999999999999 9999999999999999998876543321
Q ss_pred -------CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce--EEEEcCcCCceeEEEEeCCC----CEEEEEeC
Q 007768 383 -------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDSN----RRFVTSSD 449 (590)
Q Consensus 383 -------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~--~~~~~~h~~~V~~i~~~p~~----~~l~s~s~ 449 (590)
......++.+.+......++++++.++.+.+|+...+.. +..+.+|...|++++|+|++ ++|++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 234556788887644568999999999999898888765 67788899999999999998 89999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccceEEE
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
||.|++||++.......... ...........+....++.+..+ ..+.+|+... ......+.+| ...|.++
T Consensus 239 dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h--~~~v~~~ 312 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEE-SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---VELLSEHDDH--NGEVWSV 312 (351)
T ss_dssp TSCEEEEEEEECC----------------------------------------CCSEE---EEEEEEECTT--SSCEEEE
T ss_pred CCeEEEEeCCCCcCccccCC-cccceeccCCCcccccccccccccccceeeeeccccc---ccEEEEEecc--cccEEEE
Confidence 99999999987654433221 22233333344444444443322 3334443332 3334555666 5679999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE
Q 007768 526 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
+|+|++++|++|+.||.|+|||+.+++.+..+
T Consensus 313 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 313 SWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 99999999999999999999999987655444
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=6.2e-28 Score=251.61 Aligned_cols=287 Identities=10% Similarity=0.026 Sum_probs=213.0
Q ss_pred cccCCcceeeccccc-------ccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEe---
Q 007768 250 EHVEDKSTFHGKEET-------DYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG--- 319 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~-------d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs--- 319 (590)
..+.+...++.+++. +...|.|........... .+.......|.+|...|.++++. +..+++|+
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~~~~ 93 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---QFHILSEFALEDNDDSPTAIDAS---KGIILVGCNEN 93 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---HEEEEEEEECCTTSCCCCEEEEE---TTEEEEECCCC
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---eeeeeeEEEccCCCCceEEEEeC---CCEEEEEECCC
Confidence 445555566655433 345788866544321100 01112234678999999999876 44666653
Q ss_pred --------CCCcEEEEecCCCCeeEEEe--------ccCCCCeEEEEEccCCCEEEEE--ecCCeEEEEECCCCcEEEEe
Q 007768 320 --------MDTKVKIWDVVNSGKCMRTY--------MGHSKAVRDISFCNDGTKFLTA--SYDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 320 --------~Dg~I~iWd~~~~~~~~~~~--------~~h~~~V~~l~fspdg~~l~s~--s~Dg~I~vWd~~t~~~~~~~ 381 (590)
.|+.+++|++......+... ..+...+++++|+|||++|+++ +.|++|+|||+.+++++..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 57789999984433322221 1344568999999999998754 47899999999999999999
Q ss_pred cCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE--EcCcCCceeEEEEeCCCCEEEEEeCCC----cEEE
Q 007768 382 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE--YDQHLGAVNTITFVDSNRRFVTSSDDK----SLRV 455 (590)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~--~~~h~~~V~~i~~~p~~~~l~s~s~Dg----~I~i 455 (590)
.....+..++|+|++ .++++++ ++.+++|+..++..+.. ...|...|.+++|+|++.++++++.|+ .+++
T Consensus 174 ~~~~~V~~v~fspdg---~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 174 ETRGEVKDLHFSTDG---KVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp ECSSCCCEEEECTTS---SEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred CCCCceEEEEEccCC---ceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 888888899998865 4676666 56677777777765543 356888999999999999999999887 6888
Q ss_pred EECCCCcEEE---EeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 456 WEFGIPVVIK---YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 456 wdl~~~~~~~---~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
|++....... .....|...|++++|+|+|++||+|+.|+.|+|||+.++..+.. .+.+| ...|++++|||||+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--~~~gH--~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--FKQAH--SFAITEVTISPDST 325 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--ETTSS--SSCEEEEEECTTSC
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE--ecCcc--cCCEEEEEECCCCC
Confidence 9887654321 12235788999999999999999999999999999998765532 23566 57799999999999
Q ss_pred EEEEEcCCCcEEEEeCCC
Q 007768 533 FVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t 550 (590)
+|++|+.|++|+|||+..
T Consensus 326 ~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 326 YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEETTSEEEEEECCT
T ss_pred EEEEEeCCCeEEEEEcCC
Confidence 999999999999999964
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-29 Score=269.45 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=208.8
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 007768 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
+.-...|.+|+|+|| |.++||++.|++|+ |. ...+. +.+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 12 ~~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~-~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 12 KEFEDWKNNLTWARD-GTLYLTTFPDISIG--QP-KYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CCCSSSSCCEEECTT-SCEEEECSSSEEEE--EE-CCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred hHhhccEEEEEECCC-CCEEEEEcCCceee--cc-cccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 355688999999999 99999999999999 75 34443 37999999999999998 4555555554322
Q ss_pred cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC-----ceeEEEEeCCCCEEEEEeCC
Q 007768 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-----AVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~-----~V~~i~~~p~~~~l~s~s~D 450 (590)
. +..+.....+.+++|+|++ ..|++++.||.|++||... ++..+. |.. .|.+++|+|+|++|++|+.|
T Consensus 78 ~-~~~~~~~~~V~~vawSPdG---~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 78 G-LLNSQPVCYPRVCKPSPID---DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp C-SSTTSCSCCEEEEEECSSS---SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred e-EeecCCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence 2 2222334456677777755 5799999999999999644 666666 665 49999999999999999999
Q ss_pred CcEEEEECCCCc-------EEEEee---cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccc-cCcccc
Q 007768 451 KSLRVWEFGIPV-------VIKYIS---EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVA 519 (590)
Q Consensus 451 g~I~iwdl~~~~-------~~~~~~---~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~ 519 (590)
|+|+|||+..+. .+..+. .+|...|.+++|+|+| +++++.|+.|++|++...........+ .+| .
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~ 226 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--R 226 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--S
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--c
Confidence 999999998875 245542 4577899999999999 888999999999999776532111223 244 3
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEE--cCCCCCEEEEEeCCCcEEEcC
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW--HPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~--sp~~~~~l~s~g~Dg~I~iWD 590 (590)
..|.+++|+ |++|++++ +|.|++||+.+++......+|...|.+++| +| ++..|++++.||+ ++|.
T Consensus 227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEE
T ss_pred CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEe
Confidence 568889999 68999987 699999999998885555489999999999 99 6778999999999 8883
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.1e-27 Score=239.96 Aligned_cols=288 Identities=14% Similarity=0.143 Sum_probs=193.7
Q ss_pred ceEEEecCCCCC----eeEEEEcCCCCC--EEEEEeCCCcEEEEecCCCC---eeEEEeccCCCCeEEEEEccCCCEEEE
Q 007768 290 RLVHTWSGHTKG----VSAIRFFPKYGH--LILSAGMDTKVKIWDVVNSG---KCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 290 ~~i~~l~gH~~~----V~~l~~sp~~g~--~L~sgs~Dg~I~iWd~~~~~---~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
+++..|+.-.+. |.++.|-..+.+ .+++++ ...|++|+. .+. +++.++.+|..+|..|.|.||..-|++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKA-LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEE-SSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEccc-CCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 456666655443 566666554222 556666 568999999 456 788999999888777777774332222
Q ss_pred EecC----CeEEEEECCC-----CcEEEEecCCCcceEEEEecCCCCCcEEEEEE--CCCeEEEEeC-CCCceEEEEcCc
Q 007768 361 ASYD----KNIKYWDTET-----GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDM-NTKEITQEYDQH 428 (590)
Q Consensus 361 ~s~D----g~I~vWd~~t-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~--~dg~I~iwD~-~t~~~~~~~~~h 428 (590)
..-. +.|+..=+.. ++.+. ..++...+..+ ..++++.++. .|+.|++|++ .+++.+..+..|
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~--s~g~~~~v~~l----~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLL--KSGNIKAVLGL----TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEE--EEEEEEEEEEE----TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeccccccceEEEEECCCccccccEEE--eCCCeEEEEec----CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 2110 0011000000 00000 01111111122 1224444433 5999999999 458888888899
Q ss_pred CCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCcEEEEeecCC--CCceeEEEEcCCCCEE------------EEEE
Q 007768 429 LGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWL------------AAQS 491 (590)
Q Consensus 429 ~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~--~~~i~~i~~sp~g~~l------------a~~s 491 (590)
...++.++|++ ++.+|++++.|++|+|||+.+++.+..+...+ ...+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999999 77999999999999999999999999886433 2367788999999876 5678
Q ss_pred cCCeEEEEEcCCceeeccccc--ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEE-EEE
Q 007768 492 LDNQILIYSTRERFQLNKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI-GCE 568 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~-~v~ 568 (590)
.|++|++||..++..+..... ..+|. ..+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|...+. +++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~--~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQA--GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCC--CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCc--ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 899999999988765532210 12442 22323333 488999999999999999999999999999987655 589
Q ss_pred EcCCCCCEEEEEeCCCcEEEcC
Q 007768 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|+| ++.+|++|+.|++|+|||
T Consensus 334 fSP-DG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 334 WSG-TDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECS-SSSEEEEECTTSCEEEEE
T ss_pred ECC-CCCEEEEEECCCcEEEec
Confidence 999 788999999999999997
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.2e-29 Score=283.12 Aligned_cols=251 Identities=20% Similarity=0.294 Sum_probs=204.6
Q ss_pred EEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC--CCcEEEEecCC-CcceEEEEecCCCCCcEEEEEECCCeEE
Q 007768 336 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~--t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. ++..+..+..+ ..+.++.|+++. .+.+|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-SCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-CCCEEEEEeCCCeEE
Confidence 35678999999999999999999999999999999998 44566666543 345567776652 247899999999999
Q ss_pred EEeCCCCc--eEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCceeEEEEcC-----
Q 007768 413 QWDMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHP----- 482 (590)
Q Consensus 413 iwD~~t~~--~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp----- 482 (590)
+||+.+++ .+..+..|...|++++|+|+ +..|++++.||.|++||++..... ......|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999986 77788899999999999999 999999999999999999876221 122236888999999999
Q ss_pred --------CCCEEEEEEcCCeEEEEEcCCceee-cccccccCcccccceEEEEEcCC---CCEEEEEcCCCcEEEEeCCC
Q 007768 483 --------NTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 483 --------~g~~la~~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~v~~spd---g~~l~sgs~dg~I~iwd~~t 550 (590)
++.+|++++.||.|++||+++.... .....+.+| ...|.+++|+|+ +++|++|+.||.|++||+.+
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5899999999999999999865322 223445566 567999999999 99999999999999999988
Q ss_pred Ce-----EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 551 CK-----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 ~~-----~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+. .+.....|.+.|.+++|+| ++.+|++|+.||.|++||
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCB
T ss_pred CCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEe
Confidence 64 2333345888999999999 678999999999999997
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=6.7e-28 Score=250.26 Aligned_cols=247 Identities=13% Similarity=0.106 Sum_probs=185.3
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEE
Q 007768 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG 405 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg 405 (590)
||++ ....++..+..|...|++++|+|+|++|++|+.++ ++||++.+++.+...... ...++.+.+... .++++|
T Consensus 3 i~s~-~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~ 77 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTN--YVAFVT 77 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSS--EEEEEC
T ss_pred cccc-cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCC--EEEEEE
Confidence 4555 45667777889999999999999999999988765 789999988777665443 355666666542 455778
Q ss_pred ECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCC
Q 007768 406 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNT 484 (590)
Q Consensus 406 ~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g 484 (590)
+.|+.|++||+.+++.+..+. +...|.++.|+++ .++++ .++.|++||+... ..+..+.. +...+++++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~-- 147 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN-- 147 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--
T ss_pred CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--
Confidence 889999999999999998886 6679999999875 34444 3789999999887 54444332 444566777
Q ss_pred CEEEE--EEcCCeEEEEEcCCceee------------cc-cccccCcccccceEEEEEcCCCCEEEEEcCCCc-EEEEeC
Q 007768 485 NWLAA--QSLDNQILIYSTRERFQL------------NK-KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-CWFWDW 548 (590)
Q Consensus 485 ~~la~--~s~dg~I~iwd~~~~~~~------------~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~-I~iwd~ 548 (590)
.++++ ++.+|.|++||+.+.... .. ...+.+| ...|.+++|+|+|++|++|+.||+ |+|||+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 66666 578999999999875311 11 3456667 577999999999999999999998 999999
Q ss_pred CCCeEEEEEe-c-CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 549 KSCKVFRTLK-C-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 549 ~t~~~~~~l~-~-h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+++++..+. + |...|.+++|+| ++.+|++++.||+|+|||
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEE
Confidence 9999999998 5 999999999999 788999999999999997
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=246.93 Aligned_cols=281 Identities=14% Similarity=0.215 Sum_probs=222.0
Q ss_pred cCCCCCCcccCCcc---eeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 007768 243 NAGGEKGEHVEDKS---TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 319 (590)
Q Consensus 243 ~~~~~~~~~~~~~s---~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs 319 (590)
+.+.+....+.+.. .+..++..|...+.|-.... ...+...+.+|...|++++|+|+ +++|++|+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~ 105 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-----------GQTIPKAQQMHTGPVLDVCWSDD-GSKVFTAS 105 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-----------SCEEEEEEEECSSCEEEEEECTT-SSEEEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-----------CceeEEEeccccCCEEEEEECcC-CCEEEEEc
Confidence 34445555666663 77788888999999965431 12344788899999999999998 99999999
Q ss_pred CCCcEEEEecCCCCeeEEEeccCCCCeEEEEE--ccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCC
Q 007768 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF--CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 397 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~f--spdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
.||.|++||+ ..+..+. +.+|...|.+++| ++++.+|++++.||.|++||+.+++.+..+.......++.+..
T Consensus 106 ~dg~v~iwd~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--- 180 (368)
T 3mmy_A 106 CDKTAKMWDL-SSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--- 180 (368)
T ss_dssp TTSEEEEEET-TTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---
T ss_pred CCCcEEEEEc-CCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---
Confidence 9999999999 5666555 5679999999999 8899999999999999999999999988888776655555553
Q ss_pred CCcEEEEEECCCeEEEEeCCCCceEEEE--cCcCCceeEEEEeCCCCE----EEEEeCCCcEEEEECCCC---cEEEEee
Q 007768 398 KQNILLAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTITFVDSNRR----FVTSSDDKSLRVWEFGIP---VVIKYIS 468 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~~~~~~~--~~h~~~V~~i~~~p~~~~----l~s~s~Dg~I~iwdl~~~---~~~~~~~ 468 (590)
..+++++.++.+++|+++........ ..+...+.++.+.++... +++++.||.|++|+++.. ..+..+.
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 46899999999999999887543332 234456677777766554 999999999999999876 3333333
Q ss_pred cCCCC------------ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007768 469 EPHMH------------SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 469 ~~~~~------------~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
.|.. .|.+++|+|++++|++++.||.|++||+.++..+. .+.+| ...+.+++|+|+|++|++
T Consensus 259 -~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~--~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 259 -CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---TSEQL--DQPISACCFNHNGNIFAY 332 (368)
T ss_dssp -CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---ECCCC--SSCEEEEEECTTSSCEEE
T ss_pred -eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---EecCC--CCCceEEEECCCCCeEEE
Confidence 2333 69999999999999999999999999999876653 34445 567899999999999999
Q ss_pred EcCCCcEEEEeC
Q 007768 537 GDGEGKCWFWDW 548 (590)
Q Consensus 537 gs~dg~I~iwd~ 548 (590)
|+.|+..+.|++
T Consensus 333 ~s~d~~~~~~~~ 344 (368)
T 3mmy_A 333 ASSYDWSKGHEF 344 (368)
T ss_dssp EECCCSTTCGGG
T ss_pred Eecccccccccc
Confidence 999886555543
No 119
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=2.1e-28 Score=249.77 Aligned_cols=248 Identities=17% Similarity=0.202 Sum_probs=194.9
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCC-CCCEEEEEeC
Q 007768 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGM 320 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~-~g~~L~sgs~ 320 (590)
++.+......+.+...++.++..|..+|.|-.... ...++.++.+|.+.|++|+|+|. .+++|++|+.
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~-----------~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG-----------GQILIADLRGHEGPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETT-----------EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC-----------CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence 34445556667777778899999999999954221 11356789999999999999863 3789999999
Q ss_pred CCcEEEEecCCCC--eeEEEeccCCCCeEEEEEccC--CCEEEEEecCCeEEEEECCCCcEE---EEecC-CCcceEEEE
Q 007768 321 DTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVI---RTFST-GKIPYVVKL 392 (590)
Q Consensus 321 Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~I~vWd~~t~~~~---~~~~~-~~~~~~~~~ 392 (590)
|++|+|||+. .+ ..+..+.+|...|++++|+|+ +.+|++|+.|+.|++||+.++... ..+.. ......+.|
T Consensus 80 D~~v~iWd~~-~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 80 DRKVIIWREE-NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp TSCEEEECCS-SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred CCEEEEEECC-CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 9999999994 44 466778899999999999997 789999999999999999876422 12211 123445666
Q ss_pred ecCCC--------------CCcEEEEEECCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCCC----CEEEEEeCCC
Q 007768 393 NPDDD--------------KQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDSN----RRFVTSSDDK 451 (590)
Q Consensus 393 ~~~~~--------------~~~~lvsg~~dg~I~iwD~~t~---~~~~~~~~h~~~V~~i~~~p~~----~~l~s~s~Dg 451 (590)
.+... ...+|++|+.|+.|++||++.. ..+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 66421 1357999999999999999865 4667788999999999999986 7999999999
Q ss_pred cEEEEECCCCc----EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 452 SLRVWEFGIPV----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 452 ~I~iwdl~~~~----~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
+|+||++.... ....+ ..+...|.+++|+|++.+|++++.|+.|++|+..
T Consensus 239 ~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999987621 11122 2467899999999999999999999999999975
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=7.6e-28 Score=253.44 Aligned_cols=256 Identities=13% Similarity=0.113 Sum_probs=176.6
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCee-----EEEeccCCCCeEEEEEcc--------CCCEEEEEe
Q 007768 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC-----MRTYMGHSKAVRDISFCN--------DGTKFLTAS 362 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~-----~~~~~~h~~~V~~l~fsp--------dg~~l~s~s 362 (590)
..|...+....+.++ +.+|++|+.|++|+|||+. .+.+ +..+.+|.+.|++|+|+| ++++|++|+
T Consensus 86 ~~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~-~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVY-SLFLACVCQDNTVRLIITK-NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp C----------CCEE-EEEEEEEETTSCEEEEEEE-TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccCCCcceeecCCC-CCEEEEEeCCCcEEEEECC-CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 345554554444555 7899999999999999994 4433 234678999999999998 789999999
Q ss_pred cCCeEEEEECCCCcEEEE-ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE-----------------
Q 007768 363 YDKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE----------------- 424 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~----------------- 424 (590)
.|++|+|||+.++..+.. +.....+.+++|+|.+. ++|++|+.|+.|++||+++++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNP--NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEE--EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCC--ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 999999999988766554 44556667888887543 6899999999999999998754332
Q ss_pred --------EcCcCCceeEEEEe-CCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCe
Q 007768 425 --------YDQHLGAVNTITFV-DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 495 (590)
Q Consensus 425 --------~~~h~~~V~~i~~~-p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~ 495 (590)
..+|...|.++.|. ++++.|++++.|+++++||+........+. .+...+..+.+.|+...+.
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~------- 313 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQGIS------- 313 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEEC-------
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEcccccccc-------
Confidence 23577889999997 799999999999999999998766554443 2334444444444321110
Q ss_pred EEEEEcCCceeecccccccCcccccceEEEEEcC--CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCC
Q 007768 496 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 573 (590)
Q Consensus 496 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~ 573 (590)
.+ .......|+| ++.++++|+.||.|+|||+.+++++..+..|...|.+++|+| +
T Consensus 314 -------------------~~---~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-d 370 (393)
T 4gq1_A 314 -------------------LF---PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-D 370 (393)
T ss_dssp -------------------SS---CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-T
T ss_pred -------------------cc---CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-C
Confidence 00 1111233444 555778899999999999999999998889999999999999 7
Q ss_pred CCEEEEEeCCCcE
Q 007768 574 QSKVATCGWDGLI 586 (590)
Q Consensus 574 ~~~l~s~g~Dg~I 586 (590)
+++||+++.||.+
T Consensus 371 G~~LA~as~~Gv~ 383 (393)
T 4gq1_A 371 GSHLAIATEGSVL 383 (393)
T ss_dssp SSEEEEEESSEEE
T ss_pred CCEEEEEeCCCeE
Confidence 8899999988763
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-27 Score=255.51 Aligned_cols=289 Identities=9% Similarity=0.052 Sum_probs=221.5
Q ss_pred CCCCcccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 007768 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~ 325 (590)
........+...+.++.+.|..+|. +.. ...+.+|.+.|.+++|+|+ | .++.+.
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~d----~~~--------------~~~l~gh~~~v~~V~FsPd-g-------~~~~~~ 70 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIGQ----PKY--------------AKDINCNSKNLFHVKEFPL-E-------FENKLD 70 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEEE----ECC--------------CSCCSSBGGGTEEEEEECC-C-------CCCTTT
T ss_pred cEEEEEECCCCCEEEEEcCCceeec----ccc--------------cceecCCCccEEEEEECCC-C-------CcceEE
Confidence 4556678888888899999988882 111 1123699999999999999 5 566666
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC------cceEEEEecCCCCC
Q 007768 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK------IPYVVKLNPDDDKQ 399 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~------~~~~~~~~~~~~~~ 399 (590)
+|+. .+..+..+ .|...|.+++|+|+|.+|++++.||.|+|||..+ ++..+. ++ ...+++|+|++
T Consensus 71 ~~~~--~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG--- 141 (588)
T 2j04_A 71 FELA--QQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE--- 141 (588)
T ss_dssp TSCC--CSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS---
T ss_pred EEeC--CCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC---
Confidence 6664 22222222 5688999999999999999999999999999654 666665 44 26678888765
Q ss_pred cEEEEEECCCeEEEEeCCCCce-------EEEE----cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE---EE
Q 007768 400 NILLAGMSDKKIVQWDMNTKEI-------TQEY----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---IK 465 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~~-------~~~~----~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~---~~ 465 (590)
.+|++|+.||.|++||+.++.+ +..+ .+|...|.+++|+|++ +++++.|++|++||+..... ..
T Consensus 142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE
T ss_pred CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee
Confidence 6899999999999999998853 5666 6778899999999999 88999999999999987763 34
Q ss_pred EeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE--cCCCCEEEEEcCCCcE
Q 007768 466 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF--SPDGRFVMSGDGEGKC 543 (590)
Q Consensus 466 ~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~--spdg~~l~sgs~dg~I 543 (590)
.+...|...|.+++|+ +.+||+++ ++.|++||+.++..... ..+| ...+..++| +|++..|++++.+|.
T Consensus 220 tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~---~~gh--~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 220 MIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL---KTGS--LENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp EEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE---ECSC--CSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred eecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE---EcCC--CceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 4544677899999999 68899887 69999999987654321 1155 466778999 999999999999999
Q ss_pred EEEeCCCCe-----------------------EEEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 544 WFWDWKSCK-----------------------VFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 544 ~iwd~~t~~-----------------------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
++|....-. .+..+. +...|.+++|+| ++..+|+++.
T Consensus 291 klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 291 KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECT-TSSEEEEEEE
T ss_pred EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECC-CCCEEEEEEe
Confidence 999874211 111111 133589999999 7778888873
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-27 Score=246.18 Aligned_cols=227 Identities=12% Similarity=0.093 Sum_probs=180.3
Q ss_pred EccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC---------CCce
Q 007768 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---------TKEI 421 (590)
Q Consensus 351 fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---------t~~~ 421 (590)
+.+++.+|++|+.||.|++||+.+++.+..+.. ..+..+.+++. +++++.|+.|++|+.. +++.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITT-PNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE-ECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEec-CCceeeeeCCc------eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 445788999999999999999999998887762 22222333332 8999999999999665 5554
Q ss_pred EEEEc-CcCCceeEEEEeC--CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEE
Q 007768 422 TQEYD-QHLGAVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 422 ~~~~~-~h~~~V~~i~~~p--~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~i 498 (590)
+..+. .|.+.|.+++|+| ++++|++++.||+|++||++.+..+......+...+.+++|+|++.+|++|+.||.|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 54443 6778999999999 99999999999999999999998876665556668999999999999999999999999
Q ss_pred EEcCCceeecccccccC-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec---CCCcEE--EEEEcCC
Q 007768 499 YSTRERFQLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCI--GCEWHPL 572 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~--~v~~sp~ 572 (590)
||++++.... ..+.+ | ...|.+++|+|+|.+|++++ ++.|++||+++++.+..+.. |...+. +++|+|
T Consensus 197 wd~~~~~~~~--~~~~~~h--~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 270 (343)
T 3lrv_A 197 YNLSSPDQAS--SRFPVDE--EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD- 270 (343)
T ss_dssp EESSCTTSCC--EECCCCT--TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-
T ss_pred EECCCCCCCc--cEEeccC--CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-
Confidence 9998865431 22334 5 57899999999999999999 55999999999877655443 333343 699999
Q ss_pred CCCEEEEEeC-CCcEEEcC
Q 007768 573 EQSKVATCGW-DGLIKYWD 590 (590)
Q Consensus 573 ~~~~l~s~g~-Dg~I~iWD 590 (590)
++.+|++++. |+.|+||+
T Consensus 271 ~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp TSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEE
Confidence 7789999998 99999995
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.4e-26 Score=244.96 Aligned_cols=250 Identities=14% Similarity=0.106 Sum_probs=200.1
Q ss_pred ecCCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEecCC-CCeeEEEec--cCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 295 WSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVVN-SGKCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 295 l~gH~~~V~~l~~sp~~g~~L-~sgs~Dg~I~iWd~~~-~~~~~~~~~--~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
..+|.+.|++++|+|+ +.+| ++|+.||.|+||++.. .+.++..+. .|...|.+++|+|++++|++|+.+|.|++|
T Consensus 98 ~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp --CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 4588999999999999 7775 8999999999999931 677777776 577899999999999999999999999999
Q ss_pred ECCCCcEEE----Eec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCCCEE
Q 007768 371 DTETGQVIR----TFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 371 d~~t~~~~~----~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~-~~~h~~~V~~i~~~p~~~~l 444 (590)
++.++.... .+. ....+.++.|+++...+.+|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 998876543 333 234567788888622247899999999999999999988877 55899999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeec------------------------CCCCceeEEEEcCCCCEEEEEE-cCCeEEEE
Q 007768 445 VTSSDDKSLRVWEFGIPVVIKYISE------------------------PHMHSMPSISLHPNTNWLAAQS-LDNQILIY 499 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~------------------------~~~~~i~~i~~sp~g~~la~~s-~dg~I~iw 499 (590)
++++.|+.|++||+.++..+..+.. .....+.+++|+|++++|++++ .++.|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999999999999999988777652 2235688999999999999999 89999999
Q ss_pred Ec--CCceeecccccccCcccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCC
Q 007768 500 ST--RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWK 549 (590)
Q Consensus 500 d~--~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~ 549 (590)
++ .....+.....+.++ ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 99 544333334445544 56889999996544444442 4457887653
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=5.6e-25 Score=233.22 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=219.4
Q ss_pred ccCCcceeecccccccccceeecCCccccccCCCccCCcceEE-----EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 007768 251 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVH-----TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 251 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~-----~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~ 325 (590)
.+.+...+......+...+.|-.... +++. .+.+|...|.+++|+|+ +.++++++.|+.|+
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g-------------~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSG-------------QTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVH 194 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTC-------------CEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEE
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCC-------------eEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEE
Confidence 34444455556666667777743322 2223 45689999999999998 89999999999999
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEE
Q 007768 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs 404 (590)
+||+ ..++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++.+..+.....+..+.+.+++ ..+++
T Consensus 195 ~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g---~~l~~ 270 (433)
T 3bws_A 195 VFDL-KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDG---KELYI 270 (433)
T ss_dssp EEET-TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTS---SEEEE
T ss_pred EEEC-CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCC---CEEEE
Confidence 9999 67788888889999999999999999886554 7999999999999999988877777777887754 45666
Q ss_pred EE--------CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeecCCCCce
Q 007768 405 GM--------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 475 (590)
Q Consensus 405 g~--------~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i 475 (590)
++ .|+.|++||+++++.+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+...+..+. +...+
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~ 347 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKP 347 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSE
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCC
Confidence 66 5889999999999877766 456688999999999755 666899999999999888777764 56779
Q ss_pred eEEEEcCCCCEEEEEEc---------------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-
Q 007768 476 PSISLHPNTNWLAAQSL---------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG- 539 (590)
Q Consensus 476 ~~i~~sp~g~~la~~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~- 539 (590)
.+++|+|++++|++++. ||.|++||+.++....... . ...+..++|+|+|++|++++.
T Consensus 348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~---~---~~~~~~~~~s~dg~~l~~~~~~ 421 (433)
T 3bws_A 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE---A---GNQPTGLDVSPDNRYLVISDFL 421 (433)
T ss_dssp EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE---C---SSSEEEEEECTTSCEEEEEETT
T ss_pred CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec---C---CCCCceEEEcCCCCEEEEEECC
Confidence 99999999999988887 4699999998876554332 2 245778999999999988775
Q ss_pred CCcEEEEeCCC
Q 007768 540 EGKCWFWDWKS 550 (590)
Q Consensus 540 dg~I~iwd~~t 550 (590)
++.|++|++..
T Consensus 422 d~~i~v~~~~~ 432 (433)
T 3bws_A 422 DHQIRVYRRDG 432 (433)
T ss_dssp TTEEEEEEETT
T ss_pred CCeEEEEEecC
Confidence 99999999764
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.6e-24 Score=233.93 Aligned_cols=315 Identities=13% Similarity=0.097 Sum_probs=231.0
Q ss_pred CCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecC-C
Q 007768 253 EDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV-N 331 (590)
Q Consensus 253 ~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~-~ 331 (590)
++...+......|...+.| ..-..+++.++..+.. +.+++|+|+ +++|++++.|++|.+||+. .
T Consensus 146 ~p~~~~~vs~~~d~~V~v~-------------D~~t~~~~~~i~~g~~-~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~ 210 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALV-------------DGDSKKIVKVIDTGYA-VHISRMSAS-GRYLLVIGRDARIDMIDLWAK 210 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEE-------------ETTTCCEEEEEECSTT-EEEEEECTT-SCEEEEEETTSEEEEEETTSS
T ss_pred CCCCEEEEEEcCCCeEEEE-------------ECCCceEEEEEecCcc-cceEEECCC-CCEEEEECCCCeEEEEECcCC
Confidence 3344455555556666665 2234567788873333 899999999 9999999999999999993 3
Q ss_pred CCeeEEEeccCCCCeEEEEEcc----CCCEEEEEec-CCeEEEEECCCCcEEEEecCCC------------cceEEEEec
Q 007768 332 SGKCMRTYMGHSKAVRDISFCN----DGTKFLTASY-DKNIKYWDTETGQVIRTFSTGK------------IPYVVKLNP 394 (590)
Q Consensus 332 ~~~~~~~~~~h~~~V~~l~fsp----dg~~l~s~s~-Dg~I~vWd~~t~~~~~~~~~~~------------~~~~~~~~~ 394 (590)
+++++.++. +...+..++|+| +|++|++++. +++|.|||..+++++..+.... .+..+.+++
T Consensus 211 t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 211 EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 567777776 455689999999 9999999885 8999999999999998886521 233455555
Q ss_pred CCCCCcEEEEEECCCeEEEEeCCCCceEE--EEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEeec--
Q 007768 395 DDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVVIKYISE-- 469 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~iwD~~t~~~~~--~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~~~~~~~~-- 469 (590)
+ ...++++...++.|.+||+.+.+.+. .+ .+...+.++.|+|++++|++++ .+++|.+||+.+++++..+..
T Consensus 290 ~--~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 290 E--HPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp S--SSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred C--CCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 3 44778888889999999998875443 44 3566788999999999876654 588999999999988877753
Q ss_pred -CCCCceeEEEEcCC-CCEEEEEE-cCCeEEEEEcCCcee----ecccccccCcccccceEEEEEcCCCCEEEEEc----
Q 007768 470 -PHMHSMPSISLHPN-TNWLAAQS-LDNQILIYSTRERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---- 538 (590)
Q Consensus 470 -~~~~~i~~i~~sp~-g~~la~~s-~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---- 538 (590)
+|......+ ++|+ +.+++++. .|++|.+||+.+... ......+.++ ...+..+.|+|+|++|++++
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNP 443 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCS
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCC
Confidence 243333333 4777 55566654 579999999987211 2223344444 23455699999999999987
Q ss_pred ---CCCcEEEEeCCCCeEE-EEE--------ecCCCcEEEEEEcCCCCCEEEEEe-----CCCcEEEcC
Q 007768 539 ---GEGKCWFWDWKSCKVF-RTL--------KCHEGVCIGCEWHPLEQSKVATCG-----WDGLIKYWD 590 (590)
Q Consensus 539 ---~dg~I~iwd~~t~~~~-~~l--------~~h~~~V~~v~~sp~~~~~l~s~g-----~Dg~I~iWD 590 (590)
.+++|.+||+.+++.. ..+ ..+...+..+.|+|+ +..|+.+. .|+.|.|||
T Consensus 444 ~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 444 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR-GDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS-SSEEEEEEECCTTSCCEEEEEE
T ss_pred CcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC-CCEEEEEeecCCCCCCeEEEEE
Confidence 2679999999998877 554 345678999999995 44555442 479999997
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.5e-24 Score=230.12 Aligned_cols=264 Identities=11% Similarity=0.110 Sum_probs=207.6
Q ss_pred EEecCCCCCeeEEEEcCC-------------CCCEEEEEeCC------CcEEEEecCCCCeeEEEeccCCCCeEEEEEcc
Q 007768 293 HTWSGHTKGVSAIRFFPK-------------YGHLILSAGMD------TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN 353 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~-------------~g~~L~sgs~D------g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp 353 (590)
.++.+|...+.++++++. .+..|+.++.+ +.|++||+ .+...+.+.+|...|.+++|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~--~g~~~~~l~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY--DGYNQFVVHRSPQPLMSPAWSP 188 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET--TSCSCEEEEEESSCEEEEEECT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC--CCCCCEEEeCCCCcceeeEEcC
Confidence 568899999988888751 03455555543 79999998 3556778888999999999999
Q ss_pred CCCEEEEEecCC---eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCceEEEEcCc
Q 007768 354 DGTKFLTASYDK---NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQH 428 (590)
Q Consensus 354 dg~~l~s~s~Dg---~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h 428 (590)
+|++|++++.++ .|++||+.++++............+.|+|++. .++++++.++ .|++||+.+++. ..+..|
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~ 265 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQI-RQVTDG 265 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCE-EECCCC
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEEEECCCCCE-EeCcCC
Confidence 999999999885 99999999998876554455566777877653 3444676655 499999998876 566778
Q ss_pred CCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC---CeEEEEEcC
Q 007768 429 LGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTR 502 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d---g~I~iwd~~ 502 (590)
...+.+++|+|++++|++++. ++ .|++||+..+.... +. .+...+.+++|+|+|++|++++.+ ..|++||+.
T Consensus 266 ~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 889999999999999998886 44 67888988766432 32 355678899999999999998875 589999998
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC---cEEEEeCCCCeEEEEEecCCCcEEEEEEcC
Q 007768 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
++... .+..+ ..+..++|+|+|++|++++.++ .|++||+. +.....+..|.+.|.+++|+|
T Consensus 344 ~~~~~----~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 344 TGGVQ----VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp TCCEE----ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred CCCEE----EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccc
Confidence 76542 22233 2577899999999999888776 79999986 556778889999999999999
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.2e-23 Score=212.53 Aligned_cols=179 Identities=11% Similarity=0.111 Sum_probs=142.7
Q ss_pred CCCcEEEEecCCCCeeEEEeccCCCCeEEEEEcc---CCCEEEEEecCCeEEEEECCCCcEEEEecCCC----cceEEEE
Q 007768 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN---DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK----IPYVVKL 392 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp---dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~----~~~~~~~ 392 (590)
.|+.|++|++..+++.+..+.+|...++.++|++ ++.+|++++.|++|+|||+.++++++++..++ ....++|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 3899999999777888889999999999999999 77999999999999999999999999997543 2345567
Q ss_pred ecCCCC---------CcEEEEEECCCeEEEEeCCCCceEEEE-----cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007768 393 NPDDDK---------QNILLAGMSDKKIVQWDMNTKEITQEY-----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 393 ~~~~~~---------~~~lvsg~~dg~I~iwD~~t~~~~~~~-----~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
+|++.. ...+++|+.|++|++||..+++.+..+ .+|...+.+..++ +..+++++.|++|+|||+
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEEC
Confidence 775420 012467889999999999999887765 4666665555554 789999999999999999
Q ss_pred CCCcEEEEeecCCCCc-eeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 459 GIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~-i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
.+++.+..+.. |... +.+++|+|+|++|++|+.|++|+|||+
T Consensus 313 ~tGk~l~tL~g-H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTALLPP-VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEEECC-C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEecC-CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999988853 5544 456899999999999999999999985
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=3.9e-25 Score=232.64 Aligned_cols=238 Identities=14% Similarity=0.076 Sum_probs=166.7
Q ss_pred ccCCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcC--------CCCCEEEEEeCCC
Q 007768 251 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFP--------KYGHLILSAGMDT 322 (590)
Q Consensus 251 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp--------~~g~~L~sgs~Dg 322 (590)
.......++.+...|..+|+|-...... ....++.++.||.+.|++|+|+| + +++|+||+.|+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~--------~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~D~ 166 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETI--------ITQHVLGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGDDC 166 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEE--------EEEEEECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEETTS
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCcc--------ceeeeecccCCCCCceEEEEEccccccccCCC-CCEEEEEECCC
Confidence 3456667888999999999996543221 12234556789999999999998 5 88999999999
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCcEEEEecC------------------
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFST------------------ 383 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~------------------ 383 (590)
+|+|||+ ..+.++..+.+|...|.+++|+|++ .+|++++.|++|++||+.+++.......
T Consensus 167 tv~~Wd~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 167 TLIIWRL-TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEEEEEE-ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred eEEEEEC-CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999999 5667777788899999999999977 5899999999999999998875443211
Q ss_pred --------CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEE------------------E
Q 007768 384 --------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT------------------F 437 (590)
Q Consensus 384 --------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~------------------~ 437 (590)
......+.+.. ..+..+++++.|+.+++||+.++.....+..|...+..+. |
T Consensus 246 ~~~~~~~~~~~v~~v~~~~--~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIG--SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp ------CCSSSCSEEEEET--TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeecccccccceeeeeec--CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 11223444442 2346899999999999999998876666655554444333 3
Q ss_pred eC--CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 438 VD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 438 ~p--~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
+| ++.++++|+.||.|++||+..+....... .+..+|.+++|+|+|++||+++.+| +.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 32 23356778899999999999887766654 4777999999999999999998655 6666654
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.5e-23 Score=229.83 Aligned_cols=274 Identities=14% Similarity=0.107 Sum_probs=217.3
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEEC--CCCcEEEEecCC
Q 007768 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT--ETGQVIRTFSTG 384 (590)
Q Consensus 307 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~--~t~~~~~~~~~~ 384 (590)
|+|+ +.++++++.|++|.+||. ..++++.++..+.. +.+++|+|+|++|++++.|+.|.+||+ .+++++..+..+
T Consensus 145 ~~p~-~~~~vs~~~d~~V~v~D~-~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 145 LDLP-NLFSVTLRDAGQIALVDG-DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp CCGG-GEEEEEEGGGTEEEEEET-TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred cCCC-CEEEEEEcCCCeEEEEEC-CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence 6787 789999999999999999 68888888874333 899999999999999999999999999 899999999888
Q ss_pred CcceEEEEec----CCCCCcEEEEEE-CCCeEEEEeCCCCceEEEEcCc----------C-CceeEEEEeCCCCE-EEEE
Q 007768 385 KIPYVVKLNP----DDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQH----------L-GAVNTITFVDSNRR-FVTS 447 (590)
Q Consensus 385 ~~~~~~~~~~----~~~~~~~lvsg~-~dg~I~iwD~~t~~~~~~~~~h----------~-~~V~~i~~~p~~~~-l~s~ 447 (590)
..+..+.+++ ++ .++++++ .++.|.+||..+++++..+..+ . ..+.++.++|++.. +++.
T Consensus 222 ~~p~~va~sp~~~~dg---~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 222 IEARSVESSKFKGYED---RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp SEEEEEEECCSTTCTT---TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCcceEEeCCCcCCCC---CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 8888888887 54 4566665 5899999999999998887642 2 37889999997765 5566
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccC-cccccceEEE
Q 007768 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAG-HIVAGYACQV 525 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~v 525 (590)
..++.|.+||+.....+......+...+..+.|+|++++|++++ .++.|.+||+.++.....+..... | .+....+
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph--~g~g~~~ 376 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH--PGRGANF 376 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC--CTTCEEE
T ss_pred CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC--CCCCccc
Confidence 78899999999875543311123456688899999999877665 579999999998876654432111 2 1222223
Q ss_pred EEcCC-CCEEEEEc-CCCcEEEEeCCC-------CeEEEEEecCCCcEEEEEEcCCCCCEEEEEe-------CCCcEEEc
Q 007768 526 NFSPD-GRFVMSGD-GEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-------WDGLIKYW 589 (590)
Q Consensus 526 ~~spd-g~~l~sgs-~dg~I~iwd~~t-------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-------~Dg~I~iW 589 (590)
++|+ |.+++++. .+++|.+||+.+ +++++++.+|.+.+..++++| ++.+|++++ .+++|.||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEE
Confidence 5777 66667775 689999999998 899999999988889999999 677888876 37899999
Q ss_pred C
Q 007768 590 D 590 (590)
Q Consensus 590 D 590 (590)
|
T Consensus 455 d 455 (543)
T 1nir_A 455 D 455 (543)
T ss_dssp E
T ss_pred E
Confidence 7
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.1e-23 Score=223.35 Aligned_cols=276 Identities=12% Similarity=0.083 Sum_probs=209.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEe----CCC----cEEEEec--CCCCeeE--EEeccCCCCeEEEEEccC------------
Q 007768 299 TKGVSAIRFFPKYGHLILSAG----MDT----KVKIWDV--VNSGKCM--RTYMGHSKAVRDISFCND------------ 354 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs----~Dg----~I~iWd~--~~~~~~~--~~~~~h~~~V~~l~fspd------------ 354 (590)
...|....|.+.+..++++|+ .+| .|+|||+ . .++++ ..+.+|...++.+++++.
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGA-PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSS-TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCC-CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346777889998777888887 467 8999998 5 34455 568899998988888751
Q ss_pred --CCEEEEEecC------CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC---eEEEEeCCCCceEE
Q 007768 355 --GTKFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQ 423 (590)
Q Consensus 355 --g~~l~s~s~D------g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg---~I~iwD~~t~~~~~ 423 (590)
+..++.++.+ +.|++||+..+..............+.|+|++ ..|++++.++ .|++||+.+++..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg---~~la~~s~~~~~~~i~~~d~~tg~~~- 216 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG---SKLAYVTFESGRSALVIQTLANGAVR- 216 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS---SEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC---CEEEEEEecCCCcEEEEEECCCCcEE-
Confidence 6677776664 79999999865544444445566778888765 5688887775 9999999998875
Q ss_pred EEcCcCCceeEEEEeCCCCEEE-EEeCCCc--EEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-C--eEE
Q 007768 424 EYDQHLGAVNTITFVDSNRRFV-TSSDDKS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QIL 497 (590)
Q Consensus 424 ~~~~h~~~V~~i~~~p~~~~l~-s~s~Dg~--I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-g--~I~ 497 (590)
.+..|.+.+.+++|+|++++|+ +++.++. |++||+.++... .+. .+...+.+++|+|+|++|++++.+ + .|+
T Consensus 217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-CCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence 4566888999999999999888 6666654 999999887653 333 466789999999999999988864 4 688
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCC
Q 007768 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
+||+.++... .+..+ ...+..++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+| ++
T Consensus 295 ~~d~~~~~~~----~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg 365 (415)
T 2hqs_A 295 KVNINGGAPQ----RITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NG 365 (415)
T ss_dssp EEETTSSCCE----ECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TS
T ss_pred EEECCCCCEE----EEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CC
Confidence 8898765422 12222 3457789999999999988754 58999999998874 455554 789999999 67
Q ss_pred CEEEEEeCCC---cEEEcC
Q 007768 575 SKVATCGWDG---LIKYWD 590 (590)
Q Consensus 575 ~~l~s~g~Dg---~I~iWD 590 (590)
.+|++++.|+ .|++||
T Consensus 366 ~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 366 TMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp SEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEcCCCccEEEEEE
Confidence 7888887776 688885
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2.9e-22 Score=204.42 Aligned_cols=272 Identities=7% Similarity=0.138 Sum_probs=194.0
Q ss_pred CEEEEEeCCCcEEEEecCCCC--eeEEEeccCCCCeEEEEEccCCCEEEEEecC-CeEEEEECC--CCc--EEEEecCCC
Q 007768 313 HLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYD-KNIKYWDTE--TGQ--VIRTFSTGK 385 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D-g~I~vWd~~--t~~--~~~~~~~~~ 385 (590)
.++++++.|+.|++|++...+ ..+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++. ++. .+..+....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 344555789999999994334 23333 4577889999999999999988887 999999998 555 344555555
Q ss_pred cceEEEEecCCCCCcEEEEEECCCeEEEEeCC---CCceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCC-
Q 007768 386 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI- 460 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~- 460 (590)
.+..+++++++. .+++++..++.|.+||+. +.+.+..+.. ...+.+++|+|++++|++++ .++.|++||+..
T Consensus 85 ~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 85 SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 677788887653 344455558999999994 4445555543 34689999999999888877 899999999987
Q ss_pred CcEEE----EeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCC--cee--eccccccc-CcccccceEEEEEcCC
Q 007768 461 PVVIK----YISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRE--RFQ--LNKKKRFA-GHIVAGYACQVNFSPD 530 (590)
Q Consensus 461 ~~~~~----~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~--~~~--~~~~~~~~-~~~~~~~v~~v~~spd 530 (590)
+.... .+.......+..++|+|++++|++++ .++.|.+|++.. +.. ......+. ++.....+..++|+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 44322 23333445788899999999776665 789999999953 211 11111111 1111235667999999
Q ss_pred CCEEE-EEcCCCcEEEEeCC----CCeEEEEEecCCCcEEEEEEcCCCCCEEEEEe-CCCcEEEcC
Q 007768 531 GRFVM-SGDGEGKCWFWDWK----SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 531 g~~l~-sgs~dg~I~iwd~~----t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~Dg~I~iWD 590 (590)
|++|+ ++..++.|.+||+. +.+.+..+..+.. +.+++|+| ++.+|++++ .++.|.+|+
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEecCCCCeEEEEE
Confidence 99887 45578999999998 3455666666555 88999999 566666666 689999993
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.9e-22 Score=205.75 Aligned_cols=274 Identities=11% Similarity=0.119 Sum_probs=199.2
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCcE-EEEecC
Q 007768 306 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQV-IRTFST 383 (590)
Q Consensus 306 ~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~~t~~~-~~~~~~ 383 (590)
.|.++++.++++++.++.|.+||+ .+++.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFST-DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEET-TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeC-cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456664666888889999999999 6777777777666677 9999999997777666 89999999999987 777766
Q ss_pred CCcceE-EEEecCCCCCcEEEEEECCC---eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE-EEeCCCc-EEEEE
Q 007768 384 GKIPYV-VKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV-TSSDDKS-LRVWE 457 (590)
Q Consensus 384 ~~~~~~-~~~~~~~~~~~~lvsg~~dg---~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~-s~s~Dg~-I~iwd 457 (590)
+..+.. +.+++++ .+++++..++ .|.+||+.+++.+..+..+ ....+++|+|++++|+ +...++. |.+|+
T Consensus 82 ~~~~~~~~~~s~dg---~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 82 GQSSMADVDITPDD---QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp CSSCCCCEEECTTS---SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred CCCCccceEECCCC---CEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 666666 8888765 4566555443 8999999999988877643 4568999999998555 4456688 99999
Q ss_pred CCCCcEE----EEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 458 FGIPVVI----KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 458 l~~~~~~----~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
+.....+ .... ........++|+|+|++|++++ .++.|.+||+.++........+.. ...+..++|+|+|+
T Consensus 158 ~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 158 IDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRDGS 233 (331)
T ss_dssp ECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTTSS
T ss_pred ECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCCCC
Confidence 8754332 1111 3445678999999999766655 578999999987655111222222 23455799999999
Q ss_pred EEEEEc-CCCcEEEEeCCCCeE--EEEEecC----CC---cEEEEEEcCCCCCEE-EEEeCCCcEEEcC
Q 007768 533 FVMSGD-GEGKCWFWDWKSCKV--FRTLKCH----EG---VCIGCEWHPLEQSKV-ATCGWDGLIKYWD 590 (590)
Q Consensus 533 ~l~sgs-~dg~I~iwd~~t~~~--~~~l~~h----~~---~V~~v~~sp~~~~~l-~s~g~Dg~I~iWD 590 (590)
+|++++ .++.|.+||+.+++. +..+..+ .. .+..++|+| ++.+| +++..++.|.+||
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCCCcEEEEE
Confidence 876665 578899999999887 5555433 22 225589999 45555 5556677999996
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2e-21 Score=199.35 Aligned_cols=272 Identities=14% Similarity=0.100 Sum_probs=210.4
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeC-------CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEE-ecCCeEEE
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGM-------DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKY 369 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~-------Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I~v 369 (590)
....+..++|+|+ +++|++++. ++.|.+||. .+++.+..+.. ...+..++|+|+|++++++ ..++.|.+
T Consensus 39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDP-VTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECT-TTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcC-CCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 4456889999999 777777764 568999999 57777777654 3457899999999966554 55799999
Q ss_pred EECCCCcEEEEecCCCc----------ceEEEEecCCCCCcEEEEE-ECCCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007768 370 WDTETGQVIRTFSTGKI----------PYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~----------~~~~~~~~~~~~~~~lvsg-~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~ 438 (590)
||+.+++.+..+..+.. +..+.+++++. .+++++ ..++.|.+||+.+++.+..+..+...+.++.|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 99999999888876432 45677777553 344444 257899999999999998887666778999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeec---CCCCceeEEEEcCCCCEEEEEEcC-CeEEEEEcCCceeeccccccc
Q 007768 439 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWLAAQSLD-NQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~~i~~i~~sp~g~~la~~s~d-g~I~iwd~~~~~~~~~~~~~~ 514 (590)
|++++|++++.++.|.+||+.+......+.. .+...+..++|+|++++|++++.+ +.|.+||+.++........
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-- 271 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-- 271 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--
Confidence 9999999999999999999999888777654 234467789999999988777655 8999999987765543332
Q ss_pred CcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCC
Q 007768 515 GHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
+. ...++|+|+|+++++++ .++.|.+||..+++.+..+..+. .+.+++|+| ++.+|+.+..+
T Consensus 272 ~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 PE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSA-DGKTLYVSVKQ 334 (353)
T ss_dssp SS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECT-TSCEEEEEEEC
T ss_pred CC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcC-CCCEEEEEEcc
Confidence 11 13589999999766555 68999999999999998887654 679999999 55545444433
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=8.5e-23 Score=232.07 Aligned_cols=282 Identities=11% Similarity=0.036 Sum_probs=208.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeC-CC-----cEEEEecCCCCeeEEEeccCCC------------------------CeEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGM-DT-----KVKIWDVVNSGKCMRTYMGHSK------------------------AVRD 348 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~-Dg-----~I~iWd~~~~~~~~~~~~~h~~------------------------~V~~ 348 (590)
...|.+++|+|+ |++|++++. |+ .|++||+ .+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDI-GSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEET-TTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEEC-CCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 456999999999 999999998 88 8999999 56776666655443 3889
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCCC---cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE
Q 007768 349 ISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 349 l~fspdg~~l~s~s~Dg~I~vWd~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~ 425 (590)
++|+|||++|++++. +.|.+||+.++ ..............+.|+|++ ..|+.++ ++.|++||+.+++.....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG---~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG---GFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS---SEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC---CEEEEEe-CCcEEEEecCCCCEEEec
Confidence 999999999999986 99999999988 554433334556677888865 4566665 579999999998766554
Q ss_pred cCcCCc----------------eeEEEEeCCCCEEEEEeCCC---------------------------------cEEEE
Q 007768 426 DQHLGA----------------VNTITFVDSNRRFVTSSDDK---------------------------------SLRVW 456 (590)
Q Consensus 426 ~~h~~~----------------V~~i~~~p~~~~l~s~s~Dg---------------------------------~I~iw 456 (590)
..+... +.++.|+|+|++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 444332 47899999999999988765 78899
Q ss_pred ECCC-CcEEEEeec-CCCCceeEEEEcCCCCEEEEEEc-----CCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 457 EFGI-PVVIKYISE-PHMHSMPSISLHPNTNWLAAQSL-----DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 457 dl~~-~~~~~~~~~-~~~~~i~~i~~sp~g~~la~~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|+.+ +........ .+...+..++| |+|++|++++. +..|++||+.++............ ....+..++|+|
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~sp 346 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT-WVPLHNSLRFLD 346 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS-CCCCCSCCEECT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC-cCCcCCceEECC
Confidence 9987 665443322 36678999999 99999998765 467999999876544322211100 000234689999
Q ss_pred CCCEEEEEcCCCcEEEEeCC-CCeEEEEEecCCCcEEEE-EEcCCCCCEEEEEeCCC--cEEEcC
Q 007768 530 DGRFVMSGDGEGKCWFWDWK-SCKVFRTLKCHEGVCIGC-EWHPLEQSKVATCGWDG--LIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~-t~~~~~~l~~h~~~V~~v-~~sp~~~~~l~s~g~Dg--~I~iWD 590 (590)
||+++++++.+|.+.||.+. ++. ...+..|...|.++ .|+|++..++++++.++ .++||+
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 99999999999987777665 445 77777788888887 59995443445666666 888884
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=9.3e-22 Score=200.16 Aligned_cols=261 Identities=10% Similarity=0.073 Sum_probs=200.0
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEeccCC-C-CeEEEEEccCCCEEE-EEecCCeEEEEECCCCcEEEEecCCC----
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-K-AVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGK---- 385 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~-~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~~---- 385 (590)
.+|++++.++.|.+||+ .+++.+..+.... . .+.+++|+|+|++++ +++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEEC-CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 47899999999999999 5777777765332 2 588999999998665 55567899999999999988777654
Q ss_pred --cceEEEEecCCCCCcEEEEEE------------CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC
Q 007768 386 --IPYVVKLNPDDDKQNILLAGM------------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK 451 (590)
Q Consensus 386 --~~~~~~~~~~~~~~~~lvsg~------------~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg 451 (590)
.+..+.+++++ ..++++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++
T Consensus 81 ~~~~~~~~~s~dg---~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 81 VKSLFGAALSPDG---KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp EECTTCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred cccccceEECCCC---CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence 56677787755 3566664 579999999999988877754 4568889999999988888 68
Q ss_pred cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC------------------------eEEEEEcCCceee
Q 007768 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN------------------------QILIYSTRERFQL 507 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg------------------------~I~iwd~~~~~~~ 507 (590)
.|++||+.+......+..... ...+.|+|++.+|++.+..+ .|.+||+.++...
T Consensus 155 ~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 155 DLHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp SEEEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 899999999887776654321 11237889888765544332 4689998876543
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 508 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
...+..+ ...+..++|+|+|++|+++ ++.|++||+.+++.+..+..+. .+.+++|+| ++.+|++++.++.|+
T Consensus 233 --~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 233 --MREVRIM--DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH-SYYSVNVST-DGSTVWLGGALGDLA 304 (337)
T ss_dssp --EEEEEEC--SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEEEECT-TSCEEEEESBSSEEE
T ss_pred --EeecCCC--CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC-ceeeEEECC-CCCEEEEEcCCCcEE
Confidence 1122222 2456679999999999988 7899999999999988887543 568999999 667888888999999
Q ss_pred EcC
Q 007768 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
+||
T Consensus 305 v~d 307 (337)
T 1pby_B 305 AYD 307 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=9.5e-22 Score=195.42 Aligned_cols=252 Identities=13% Similarity=0.129 Sum_probs=185.0
Q ss_pred EEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CcEEEEecCC--CcceEEEEe
Q 007768 317 SAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTG--KIPYVVKLN 393 (590)
Q Consensus 317 sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~~--~~~~~~~~~ 393 (590)
+++.|+.|++||+ ..++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++........ ..+..+.|+
T Consensus 17 ~~~~~~~i~~~d~-~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNI-RTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEET-TTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeC-CCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 3467899999999 455544 5567899999999999999999987 78999999999 8877666444 344567787
Q ss_pred cCCCCCcEEEEEEC----CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE-EEeCCCcEEEEECCCC-cEEEEe
Q 007768 394 PDDDKQNILLAGMS----DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV-TSSDDKSLRVWEFGIP-VVIKYI 467 (590)
Q Consensus 394 ~~~~~~~~lvsg~~----dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~-s~s~Dg~I~iwdl~~~-~~~~~~ 467 (590)
+++ .+|++++. ...|..|++.++.. ..+..+ ..+.+++|+|++++|+ +++.++.++||+++.. .....+
T Consensus 94 pdg---~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 94 PDG---ALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL 168 (297)
T ss_dssp TTS---SEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred CCC---CEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc
Confidence 755 56777772 34566666666553 344333 3589999999999887 7778999999986432 222333
Q ss_pred ecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcC-CceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----
Q 007768 468 SEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE----- 540 (590)
Q Consensus 468 ~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d----- 540 (590)
..+...+.+++|+|++++|++++ .++.+.+|++. ..... ..+..+ ...+..++|+|+|++|++++.+
T Consensus 169 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 169 -THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV---ERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp -CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE---EECCCC--SEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred -ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc---EEEecC--CcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 34667899999999999888776 48899999875 22222 223333 3467789999999999888765
Q ss_pred ------CcEEEEeCCCCeE--EEEEecCCCcEEEEEEcCCCCCEEEEEeCC
Q 007768 541 ------GKCWFWDWKSCKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 541 ------g~I~iwd~~t~~~--~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
+.|++||+.+++. +..+..|...+.+++|+| ++.+|++++.|
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEEC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEec
Confidence 5699999988765 444557888899999999 56677766654
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=2.6e-20 Score=189.76 Aligned_cols=274 Identities=10% Similarity=0.021 Sum_probs=194.5
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCee-EEEeccCCCCeEEEEEccCCCEEEEEecCC-
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKC-MRTYMGHSKAVRDISFCNDGTKFLTASYDK- 365 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~-Dg~I~iWd~~~~~~~-~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg- 365 (590)
.+++..+..+...+ +++|+|+ +++|++++. ++.|.+||+ ..++. ...+..+...+.+++|+|+|++|+++..++
T Consensus 30 ~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 106 (331)
T 3u4y_A 30 LEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIET-QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH 106 (331)
T ss_dssp CCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEEC-SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred cceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEEC-CCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence 45566666677777 9999999 775555554 899999999 46666 777777777666699999999999555553
Q ss_pred --eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCe-EEEEeCCCCceE----EEEcCcCCceeEEEEe
Q 007768 366 --NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK-IVQWDMNTKEIT----QEYDQHLGAVNTITFV 438 (590)
Q Consensus 366 --~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~-I~iwD~~t~~~~----~~~~~h~~~V~~i~~~ 438 (590)
.|.+||+.+++.+..+..+..+..+.+.+++. .+++++..++. |.+|++.....+ .........+.+++|+
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s 184 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGN--GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFT 184 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECCTTEEEEEECTTSS--CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEEC
T ss_pred cccEEEEECCCCCeEEEEECCCCccceEECCCCC--EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEEC
Confidence 89999999999999888888888888888653 46777777788 999998764332 1122344568999999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCcE---EEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccc
Q 007768 439 DSNRRFVTS-SDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 439 p~~~~l~s~-s~Dg~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
|++++++++ ..++.|++||+.+... +..+. ....+..++|+|+|++|++++ .++.|.+||+.++..... ..+
T Consensus 185 pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~-~~~ 261 (331)
T 3u4y_A 185 PDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV-KSF 261 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE-EEE
T ss_pred CCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee-ccc
Confidence 999966554 5689999999988877 66664 346678999999999877665 467899999987654111 111
Q ss_pred cCc-----ccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcC
Q 007768 514 AGH-----IVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 514 ~~~-----~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
... .....+..++|+|+|++|++++ .++.|.+||+..... ..+......-..+.++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~g~~~~~~~ 324 (331)
T 3u4y_A 262 GHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV-GYVAGIEANGGIAICHP 324 (331)
T ss_dssp ECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE-EECTTCCCBSCEEECCC
T ss_pred ccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc-cceecccccCCeEEECC
Confidence 111 0011124589999999886555 567999999977543 33333332222344455
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=4.8e-20 Score=187.89 Aligned_cols=293 Identities=12% Similarity=0.110 Sum_probs=198.2
Q ss_pred cccccccccceeecCCccccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCC-CcEEEEecCC-CCe--e
Q 007768 260 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD-TKVKIWDVVN-SGK--C 335 (590)
Q Consensus 260 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~D-g~I~iWd~~~-~~~--~ 335 (590)
.....|...+.|-..... ..+.+..+ .|...+.+++|+|+ +++|++++.+ +.|.+|++.. .+. .
T Consensus 9 ~~~~~~~~v~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~ 76 (343)
T 1ri6_A 9 IASPESQQIHVWNLNHEG----------ALTLTQVV-DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTF 76 (343)
T ss_dssp EEEGGGTEEEEEEECTTS----------CEEEEEEE-ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EeCCCCCeEEEEEECCCC----------cEEEeeeE-ecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceee
Confidence 333556677777543211 01223333 57788999999999 8888888876 9999999941 232 3
Q ss_pred EEEeccCCCCeEEEEEccCCCEEEEEec-CCeEEEEEC---CCCcEEEEecCCCcceEEEEecCCCCCcEEEEEE-CCCe
Q 007768 336 MRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDT---ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM-SDKK 410 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~---~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~-~dg~ 410 (590)
+..+..+. .+.+++|+|++++|++++. ++.|.+||+ .+.+.+..+.....+..+.+.+++ ..+++++ .++.
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~ 152 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN---RTLWVPALKQDR 152 (343)
T ss_dssp EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS---SEEEEEEGGGTE
T ss_pred ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCC---CEEEEecCCCCE
Confidence 44554444 8899999999998877765 889999999 444566666666667778888765 3455555 8999
Q ss_pred EEEEeCCC-CceEE----EEcC-cCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCC--CcE--EEEeec-CC----CCc
Q 007768 411 IVQWDMNT-KEITQ----EYDQ-HLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI--PVV--IKYISE-PH----MHS 474 (590)
Q Consensus 411 I~iwD~~t-~~~~~----~~~~-h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~--~~~--~~~~~~-~~----~~~ 474 (590)
|++||+.+ ++... .+.. ....+.+++|+|+++++++++ .++.|.+|++.. +.. ...+.. +. ...
T Consensus 153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence 99999987 65432 2222 345788999999999776554 789999999954 222 222221 11 234
Q ss_pred eeEEEEcCCCCEEEEEE-cCCeEEEEEcCCc-eeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEE--eCC
Q 007768 475 MPSISLHPNTNWLAAQS-LDNQILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFW--DWK 549 (590)
Q Consensus 475 i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iw--d~~ 549 (590)
+..++|+|++++|+++. .++.|.+|++... ........+..+ ..+..++|+|+|++|++++ .++.|.+| |..
T Consensus 233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 66899999999887555 7899999999731 111112222222 2256799999999988887 68999999 555
Q ss_pred CCeE--EEEEecCCCcEEEEEEcCC
Q 007768 550 SCKV--FRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 550 t~~~--~~~l~~h~~~V~~v~~sp~ 572 (590)
+++. +..+... ....+++|.++
T Consensus 310 ~g~~~~~~~~~~g-~~p~~i~~~~~ 333 (343)
T 1ri6_A 310 QGLLHEKGRYAVG-QGPMWVVVNAH 333 (343)
T ss_dssp TTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred CceeeEccccccC-CCCeeEEEEcc
Confidence 6643 4455543 34567888773
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.1e-21 Score=222.08 Aligned_cols=277 Identities=10% Similarity=0.059 Sum_probs=196.9
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC---CeEEEEEccCCCEEEEEecC---------CeEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK---AVRDISFCNDGTKFLTASYD---------KNIK 368 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~---~V~~l~fspdg~~l~s~s~D---------g~I~ 368 (590)
.+.+++|+|+ |+++++ +.||+|++||+ .+++....+..|.. .|.+++|+|||++|++++.+ +.|.
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~-~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEEC-CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 3677899999 777766 78999999999 57777777777765 49999999999999999764 7889
Q ss_pred EEECCCCcEEEEecCCC----cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCce------------
Q 007768 369 YWDTETGQVIRTFSTGK----IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV------------ 432 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V------------ 432 (590)
+||+.+++. ..+.... ....+.|+|++ ..|+.++. +.|++||+.+++.......+...+
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG---~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG---QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSST---TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred EEECCCCce-EeccCCccccccccccEECCCC---CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 999999887 3332221 14556777765 34666654 899999999988777665544433
Q ss_pred ------eEEEEeCCCCEEEEEeCCC----------------------------------cEEEEECCCCcEEEEeecC--
Q 007768 433 ------NTITFVDSNRRFVTSSDDK----------------------------------SLRVWEFGIPVVIKYISEP-- 470 (590)
Q Consensus 433 ------~~i~~~p~~~~l~s~s~Dg----------------------------------~I~iwdl~~~~~~~~~~~~-- 470 (590)
.++.|+|+|++|++++.++ .|++||+.++.....+..+
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~ 249 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD 249 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence 7899999999999987553 7999999887754445432
Q ss_pred ---CCCceeEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccce----EEEEEcCCCCEEEE--E
Q 007768 471 ---HMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYA----CQVNFSPDGRFVMS--G 537 (590)
Q Consensus 471 ---~~~~i~~i~~sp~g~~la~~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v----~~v~~spdg~~l~s--g 537 (590)
+...+..++|+|+|++|++.+.. ..|++||+.++......... + ...+ ..++|||||+.|+. +
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~--~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--S--EAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--C--SSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec--c--CCEEeccCCCceEcCCCCeEEEEEe
Confidence 25678899999999988776543 57999999876543222111 1 1111 25799999997764 4
Q ss_pred cCCC------cEEEEe-CCCCe--EEEEEecCCCcEEE-EEEcCCCCCEEEEEeCC---CcEEEcC
Q 007768 538 DGEG------KCWFWD-WKSCK--VFRTLKCHEGVCIG-CEWHPLEQSKVATCGWD---GLIKYWD 590 (590)
Q Consensus 538 s~dg------~I~iwd-~~t~~--~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~D---g~I~iWD 590 (590)
..++ .|++|| ..++. +...+..+...+.. ++|+| ++..|+..+.+ +.++||+
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEE
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEE
Confidence 5666 577788 34444 14444444444554 69999 56666655544 7888884
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=6.8e-21 Score=216.39 Aligned_cols=265 Identities=9% Similarity=0.021 Sum_probs=194.6
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe--eEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
.|.+++|+|+ |++|++++. +.|++||+ ..+. .+..+..|...+.+++|+|||++|++++ ++.|.+||+.+++..
T Consensus 110 ~v~~~~~SpD-g~~l~~~~~-~~i~~~d~-~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 110 GIVDYQWSPD-AQRLLFPLG-GELYLYDL-KQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp ESCCCEECTT-SSEEEEEET-TEEEEEES-SSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcceeEECCC-CCEEEEEeC-CcEEEEEC-CCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 4899999999 899988886 99999999 3442 4556777888999999999999999887 469999999998877
Q ss_pred EEecCCCc-----------------ceEEEEecCCCCCcEEEEEECCC--------------------------------
Q 007768 379 RTFSTGKI-----------------PYVVKLNPDDDKQNILLAGMSDK-------------------------------- 409 (590)
Q Consensus 379 ~~~~~~~~-----------------~~~~~~~~~~~~~~~lvsg~~dg-------------------------------- 409 (590)
.....+.. ...+.|+|++ ..|++++.|+
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg---~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD---SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS---SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCC---CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 65544332 2457787765 3466665554
Q ss_pred -eEEEEeCCC-CceEEEEc--CcCCceeEEEEeCCCCEEEEEeC-----CCcEEEEECCCCcEEEEeecCCCC---ceeE
Q 007768 410 -KIVQWDMNT-KEITQEYD--QHLGAVNTITFVDSNRRFVTSSD-----DKSLRVWEFGIPVVIKYISEPHMH---SMPS 477 (590)
Q Consensus 410 -~I~iwD~~t-~~~~~~~~--~h~~~V~~i~~~p~~~~l~s~s~-----Dg~I~iwdl~~~~~~~~~~~~~~~---~i~~ 477 (590)
.|++||+.+ ++...... .|...+.+++| |+|++|++++. +..|++||+.++.....+...... .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 899999998 87655443 37778999999 99999987764 567999999988776655432222 4568
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE-EEcCCCCEEE-EEcCCC--cEEEEeCCC-Ce
Q 007768 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVM-SGDGEG--KCWFWDWKS-CK 552 (590)
Q Consensus 478 i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v-~~spdg~~l~-sgs~dg--~I~iwd~~t-~~ 552 (590)
++|+|+|+++++++.++.+.||.+...... ..+..+ ...+..+ .|+|+|+.|+ +++.++ .++||++.. +.
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~~---~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGKA---AALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSCE---EESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCCe---eeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 999999999999999998888876521112 233333 2345555 5999999775 455555 899999864 55
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCEEEEE
Q 007768 553 VFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 553 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
....+.. ...+.+++|+|+ +.+|+..
T Consensus 417 ~~~~l~~-~~~~~~~~~spd-g~~l~~~ 442 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFARN-ASVYVDS 442 (741)
T ss_dssp CCEECCC-SCSEEEEEECTT-SSEEEEE
T ss_pred Ceeeccc-CCCceEEEECCC-CCEEEEE
Confidence 5666665 566889999995 5555444
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=4.5e-21 Score=212.00 Aligned_cols=267 Identities=11% Similarity=0.071 Sum_probs=196.5
Q ss_pred CCCeeEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCeeEEEeccCC-CCeEEEEEccCCCEEEEEec---CCeEEEEECC
Q 007768 299 TKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASY---DKNIKYWDTE 373 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~ 373 (590)
..+|.+++|+|+ |+.|++++. ||+++||++ ..+... .+..|. ..|..++|+|| +++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~-~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLY-DGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEE-ETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEE-cCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 457999999999 888988877 999999998 455554 455555 68999999999 77777765 4555665443
Q ss_pred C---CcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 374 T---GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 374 t---~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
. +... .+..........+++++. .++++...++.+.+||+.+++.......+. .++.|+|+|++|++++.+
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~--~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGE--AVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSS--CEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEE
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCC--eEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEc
Confidence 2 3333 444444455778888764 455555566666699999987665554333 899999999999988877
Q ss_pred ----CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC--eEEEEEcCCceeecccccccCcccccceEE
Q 007768 451 ----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 451 ----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
+.|++||+.++... .+ ..+...+..++|+|+|++|+++..++ .|++||+.++... . +.++ ...+..
T Consensus 171 ~~~~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~---~~~~--~~~~~~ 242 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D---LELP--SKDFSS 242 (582)
T ss_dssp ETTEEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E---CCCS--CSHHHH
T ss_pred CCCCeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E---ccCC--CcChhh
Confidence 78999999877655 33 34677889999999999999888888 8999999876544 2 2222 112222
Q ss_pred EE--------EcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCc---EEEcC
Q 007768 525 VN--------FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL---IKYWD 590 (590)
Q Consensus 525 v~--------~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~---I~iWD 590 (590)
++ |+|||.++++++.+|.+++|++ ++... .+.+.|.+++|+ ++.++++++.+.. |.+||
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEc
Confidence 34 9999999999999999999999 76554 345678999999 4567888877744 55554
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.2e-20 Score=189.98 Aligned_cols=257 Identities=11% Similarity=0.045 Sum_probs=193.2
Q ss_pred ceEEEec-CCCC-CeeEEEEcCCCCC-EEEEEeCCCcEEEEecCCCCeeEEEecc-C----CCCeEEEEEccCCCEEEEE
Q 007768 290 RLVHTWS-GHTK-GVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMG-H----SKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 290 ~~i~~l~-gH~~-~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h----~~~V~~l~fspdg~~l~s~ 361 (590)
+++.++. ++.. .+.+++|+|+ ++ ++++++.++.|.+||+ .+++.+..+.. + ...+.+++|+|+|++|+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 99 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDL-VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY 99 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEET-TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEE
T ss_pred cEEEEEEcCCCCCCccceEEcCC-CCEEEEEeCCCCeEEEEEC-CCCCeEeeEEcCCcccccccccceEECCCCCEEEEE
Confidence 4455554 3322 4889999999 65 4566677899999999 56777666542 2 2367899999999999988
Q ss_pred e------------cCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC
Q 007768 362 S------------YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL 429 (590)
Q Consensus 362 s------------~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~ 429 (590)
+ .++.|.+||+.+++.+..+..+..+..+.+++++. .++++ ++.|++||+.+++.+..+..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS---KLYGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS---CEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred ecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCC---EEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence 6 57999999999999988887777777788887653 35555 6899999999998887776543
Q ss_pred CceeEEEEeCCCCEEEEEeCCC------------------------cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCC
Q 007768 430 GAVNTITFVDSNRRFVTSSDDK------------------------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN 485 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg------------------------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~ 485 (590)
. ...+.|+|++..++.++..+ .|.+||+.+.........++...+.+++|+|+++
T Consensus 175 ~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 175 W-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp T-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS
T ss_pred c-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCC
Confidence 1 11237888888765554332 4689999888765322234556788999999999
Q ss_pred EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCC
Q 007768 486 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~ 562 (590)
+|+++ ++.|.+||+.++........ ...+.+++|+|+|++|++++.++.|.+||+.+++.+..+..+.+
T Consensus 254 ~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 254 RAFGA--YNVLESFDLEKNASIKRVPL------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEEC------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EEEEe--CCeEEEEECCCCcCcceecC------CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 99988 79999999987655433221 13355799999999999999999999999999999998886543
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.3e-20 Score=212.93 Aligned_cols=275 Identities=10% Similarity=0.096 Sum_probs=198.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC----
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET---- 374 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t---- 374 (590)
...|.+++|+|+ +.++++. ++.|++||+ ..++.. .+..+...+.+++|+|||++|+++ .++.|++||+.+
T Consensus 81 ~~~v~~~~~spd-~~~~~~~--~~~i~~~d~-~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT--QGGLVGFDM-LARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE--TTEEEEEET-TTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred ccCceeEEECCC-CeEEEEE--CCEEEEEEC-CCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 367999999999 6665553 599999999 455544 445677789999999999999985 689999999998
Q ss_pred -CcEEEEecCCCc---------------ceEEEEecCCCCCcEEEEEE--------------------------------
Q 007768 375 -GQVIRTFSTGKI---------------PYVVKLNPDDDKQNILLAGM-------------------------------- 406 (590)
Q Consensus 375 -~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~lvsg~-------------------------------- 406 (590)
++.......+.. ...+.|+|++ ..|++++
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg---~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG---SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS---SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC---CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 877665444333 3567787765 4566665
Q ss_pred -CCCeEEEEeCCCCceEEEEc--CcCCceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEee-cCCCC---c
Q 007768 407 -SDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYIS-EPHMH---S 474 (590)
Q Consensus 407 -~dg~I~iwD~~t~~~~~~~~--~h~~~V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~~~~~~~~-~~~~~---~ 474 (590)
.+..|++||+.+++...... .|...+.+++|+|++++|++++.++ .|++||+.++.....+. ..... .
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 44789999999987655442 4667899999999999999987775 89999999884333332 22221 2
Q ss_pred eeEEEEcC--CCCEEEEEEcCCeEEEEEcC-CceeecccccccCcccccceEE-EEEcCCCCEEEEEc-CCC----cEEE
Q 007768 475 MPSISLHP--NTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGD-GEG----KCWF 545 (590)
Q Consensus 475 i~~i~~sp--~g~~la~~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~-v~~spdg~~l~sgs-~dg----~I~i 545 (590)
+..++|+| +|++|++++.++.+.||.+. ++..+. .+..+ ...+.. ++|+|+|+.|+.++ .++ .|+.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~---~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR---QVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE---ECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE---ecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence 46789999 99999999999999998875 333222 22333 233544 79999999876554 444 6788
Q ss_pred EeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEE-eCC---CcEEEcC
Q 007768 546 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWD---GLIKYWD 590 (590)
Q Consensus 546 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~-g~D---g~I~iWD 590 (590)
||+.+++ ...+. |...+.+++|+| ++++|+.. +.+ +.|++||
T Consensus 387 ~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 387 IDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEE
T ss_pred EEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEE
Confidence 8887776 33333 667799999999 55566554 433 4599886
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=2.5e-20 Score=220.10 Aligned_cols=279 Identities=10% Similarity=0.100 Sum_probs=221.0
Q ss_pred EEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 292 i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
...+.+|...|.++.|+++ .++++++.++.+.||.+...+.....+..|. .+..++|+|+|++|+++ .++.|.+||
T Consensus 196 ~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d 271 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFN 271 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred eEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEec
Confidence 3455899999999999987 6778888899999998854455666676665 46788999999999888 489999999
Q ss_pred CCCCcEEEEecCCC------------cceEEEEe-cCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC-ceeEEEE
Q 007768 372 TETGQVIRTFSTGK------------IPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-AVNTITF 437 (590)
Q Consensus 372 ~~t~~~~~~~~~~~------------~~~~~~~~-~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~-~V~~i~~ 437 (590)
+...... .+.... ....+.|+ |++ ..+++++ ++.|++|++.++.... +..|.. .+.++.|
T Consensus 272 ~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 272 PDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG 345 (1045)
T ss_dssp TTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECS
T ss_pred CCceEee-eeccCcccccccccccccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeE
Confidence 9555444 444321 45678888 765 3455555 8899999999887544 566777 8999999
Q ss_pred eCCCCEEEEEeCCCcEE-EEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCc
Q 007768 438 VDSNRRFVTSSDDKSLR-VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 516 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~-iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 516 (590)
+ +++.|++++.++.|. +|++...... .+. .+...+..++|+|+|++|++++.++.|++||+.++..... ..++
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~---~~~~ 419 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI---ERSR 419 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECS
T ss_pred c-CCCeEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe---ccCC
Confidence 9 999999999888888 9999876544 343 5677899999999999999999999999999987654322 2233
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCC----------cEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 517 IVAGYACQVNFSPDGRFVMSGDGEG----------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~dg----------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
...+..++|||||++|++++.++ .|++||+.+++ +..+..|...+.+++|+| ++.+|++++.++..
T Consensus 420 --~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 420 --EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLD 495 (1045)
T ss_dssp --SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCC
T ss_pred --CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCC
Confidence 34566799999999998887644 89999999988 667778888899999999 67788899988877
Q ss_pred EEcC
Q 007768 587 KYWD 590 (590)
Q Consensus 587 ~iWD 590 (590)
.+|+
T Consensus 496 ~~~~ 499 (1045)
T 1k32_A 496 PSPD 499 (1045)
T ss_dssp CEEC
T ss_pred cCcc
Confidence 7774
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=8.8e-21 Score=214.32 Aligned_cols=271 Identities=9% Similarity=0.094 Sum_probs=192.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeE-EEeccCC-----------------CCeEEEEEccCCCEEEEEec
Q 007768 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHS-----------------KAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 302 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~-----------------~~V~~l~fspdg~~l~s~s~ 363 (590)
+..+.|. +..+++++.++ | +||+ .+++.+ ..+..|. ..|.+++|+|+ ..++.+ .
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~-~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~ 99 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNK-ANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-T 99 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-E
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEEC-CCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-E
Confidence 5567788 35667777788 8 9999 566552 3443433 56999999999 666655 4
Q ss_pred CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-----CceEEEEcCcCCc-------
Q 007768 364 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEITQEYDQHLGA------- 431 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-----~~~~~~~~~h~~~------- 431 (590)
++.|++||+.+++.............+.|+|++ ..|++ ..++.|++||+.+ ++.......+...
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG---~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDTNEETASLDFSPVG---DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TTEEEEEETTTTEEEEEECCTTCCTTCEECTTS---SEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred CCEEEEEECCCCceEEccCCcccccCCcCCCCC---CEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 599999999999877666555556677888865 35655 4689999999998 7766544444333
Q ss_pred -------eeEEEEeCCCCEEEEEe---------------------------------CCCcEEEEECCCCcEEEEeec-C
Q 007768 432 -------VNTITFVDSNRRFVTSS---------------------------------DDKSLRVWEFGIPVVIKYISE-P 470 (590)
Q Consensus 432 -------V~~i~~~p~~~~l~s~s---------------------------------~Dg~I~iwdl~~~~~~~~~~~-~ 470 (590)
+.++.|+|+|++|++++ .+..|++||+.++........ .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 48999999999999987 456799999988775443322 3
Q ss_pred CCCceeEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceeecccccccCcccccceEEEEEcC--CCCEEEEEcCCCcE
Q 007768 471 HMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKC 543 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~la~~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--dg~~l~sgs~dg~I 543 (590)
+...+.+++|+|+|++|++++.++ .|++||+.++.................+..++|+| ||++|++++.+|.+
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 556789999999999999988775 89999998763222221111110011234579999 99999999999999
Q ss_pred EEEeCC-CCeEEEEEecCCCcEEE-EEEcCCCCCEEEEEeCCC
Q 007768 544 WFWDWK-SCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 544 ~iwd~~-t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~Dg 584 (590)
+||.+. ++..+..+..|...+.+ ++|+|++..++++++.++
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 999886 67777888888877877 799995444445555555
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=1.5e-19 Score=185.34 Aligned_cols=243 Identities=12% Similarity=0.152 Sum_probs=192.7
Q ss_pred CCCCeEEEEEccCCCEEEEEec-------CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEE
Q 007768 342 HSKAVRDISFCNDGTKFLTASY-------DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~-------Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 414 (590)
....+..++|+|++++|++++. ++.|.+||..+++.+..+..+..+..+.+.+++. .+++++..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQ--TLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTT--EEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCC--EEEEEecCCCEEEEE
Confidence 3456889999999998888874 5689999999999999988777777888888653 466666778999999
Q ss_pred eCCCCceEEEEcCcCCc---------eeEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC
Q 007768 415 DMNTKEITQEYDQHLGA---------VNTITFVDSNRRFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 415 D~~t~~~~~~~~~h~~~---------V~~i~~~p~~~~l~s~s--~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
|+.+++.+..+..+... +.++.|+|+++++++++ .++.|.+||+.+...+..+.. +...+.+++|+|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceEEECCC
Confidence 99999988887655432 68899999999877776 478899999999888777642 4445788999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCCCeEEEEEecCCC
Q 007768 484 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 484 g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~t~~~~~~l~~h~~ 562 (590)
+++|++++.++.|.+||+.++........... .....+..++|+|+|++|++++. ++.|.+||..+++.+..+..+..
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLDD-GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCCS-SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence 99999999999999999988765544332111 11345677999999998776664 59999999999999988886543
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 563 VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+++|+|++..++++...++.|.+||
T Consensus 275 --~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 275 --LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp --CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred --ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 57999995443555555799999996
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=5.1e-19 Score=181.81 Aligned_cols=263 Identities=9% Similarity=0.118 Sum_probs=179.6
Q ss_pred CCcEEEEecCC-CCeeEE-EeccCCCCeEEEEEccCCCEEEEEec---CCeEEEEECCCCcE--EEE-ecCCCcceEEEE
Q 007768 321 DTKVKIWDVVN-SGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQV--IRT-FSTGKIPYVVKL 392 (590)
Q Consensus 321 Dg~I~iWd~~~-~~~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~t~~~--~~~-~~~~~~~~~~~~ 392 (590)
++.|.+|.+.. +++... ....+...+..++|+|+|+ |++++. ++.|.+|++.++.. +.. ......+..+++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 45688887743 344332 3345667788999999999 555554 68999999987763 333 223556778888
Q ss_pred ecCCCCCcEEEEEE-CCCeEEEEeCC-CC--ceEEEEcC---------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007768 393 NPDDDKQNILLAGM-SDKKIVQWDMN-TK--EITQEYDQ---------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 393 ~~~~~~~~~lvsg~-~dg~I~iwD~~-t~--~~~~~~~~---------h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
++++ .+|++++ .++.|.+|++. .+ ..+..+.. +...+.+++|+|+++.+++...++.|++|++.
T Consensus 94 spdg---~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 94 DEAR---QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp ETTT---TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred CCCC---CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence 8865 4555555 78999999996 33 23333321 12348899999999966666778899999998
Q ss_pred -CCcEE--EEeecCCCCceeEEEEcCCCCEEEEE-EcCCeEEEEEcCC--ceeecccccccCcc----cccceEEEEEcC
Q 007768 460 -IPVVI--KYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRE--RFQLNKKKRFAGHI----VAGYACQVNFSP 529 (590)
Q Consensus 460 -~~~~~--~~~~~~~~~~i~~i~~sp~g~~la~~-s~dg~I~iwd~~~--~~~~~~~~~~~~~~----~~~~v~~v~~sp 529 (590)
.+... ..+.......+..++|+|+|++|+++ ..++.|.+|++.. +.. .....+.... ....+..++|+|
T Consensus 171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF-TQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-EEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-EEeeeeeecCCCCCCCCcceeEEECC
Confidence 34322 22223334467789999999976664 5678999999874 221 1111111111 113477899999
Q ss_pred CCCEEE-EEcCCCcEEEEeCC---CCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC-CCcEEEc
Q 007768 530 DGRFVM-SGDGEGKCWFWDWK---SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-DGLIKYW 589 (590)
Q Consensus 530 dg~~l~-sgs~dg~I~iwd~~---t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~-Dg~I~iW 589 (590)
||++|+ ++..++.|.+|++. ..+.+..+..+...+.+++|+| ++++|++++. ++.|.+|
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEE
Confidence 999874 55568999999997 3356667777777789999999 6667777665 5899999
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=2e-19 Score=183.93 Aligned_cols=260 Identities=9% Similarity=0.062 Sum_probs=186.0
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCC-CCeEEEEEccCCCEEE-EEecCCeEEEEECCCCcEEEEe
Q 007768 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 304 ~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~ 381 (590)
.++++++ +.++++++.++.|.+||+ .+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+
T Consensus 4 g~~~~~~-~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAG-HEYMIVTNYPNNLHVVDV-ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTT-CEEEEEEETTTEEEEEET-TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCC-CEEEEEeCCCCeEEEEEC-CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 3456676 889999999999999999 5778777776543 2588999999998665 5556899999999999988877
Q ss_pred cCCCc-------ceEEEEecCCCCCcEEEEEECC------------CeEEEEeCCCCc---eEEEEcCcCCceeEEEEeC
Q 007768 382 STGKI-------PYVVKLNPDDDKQNILLAGMSD------------KKIVQWDMNTKE---ITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 382 ~~~~~-------~~~~~~~~~~~~~~~lvsg~~d------------g~I~iwD~~t~~---~~~~~~~h~~~V~~i~~~p 439 (590)
..... +..+.+++++ ..+++++.+ +.|.+||+.+++ .+..+.. ...+.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~ 157 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDG---KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD 157 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECT
T ss_pred EcccccccccccccceEECCCC---CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECC
Confidence 65442 5667787765 456666654 899999998853 3344433 34688999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC-----------------------ceeEEEEcCCCC-----------
Q 007768 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-----------------------SMPSISLHPNTN----------- 485 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-----------------------~i~~i~~sp~g~----------- 485 (590)
+++ +++++. .|++||+.+...+..+...... ....+++++++.
T Consensus 158 dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 555543 4999999988877766432100 233455555431
Q ss_pred EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcE
Q 007768 486 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC 564 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V 564 (590)
++......+.+.+|++.. ....+..++|+| +|++|+++ ++.|++||+.+++.+..+..+. .+
T Consensus 235 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~ 297 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFAD--------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TY 297 (349)
T ss_dssp EEEEETTTCCEEEEEEEE--------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CC
T ss_pred EEEEeccCCcEEeccccc--------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-Cc
Confidence 111222334455544421 134566799999 99999988 8899999999999988887543 46
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 565 IGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.+++|+| ++.+|++++.++.|++||
T Consensus 298 ~~~~~s~-dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 298 YCVAFDK-KGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp CEEEECS-SSSCEEEESBSSEEEEEE
T ss_pred cceEECC-CCCEEEEecCCCeEEEEe
Confidence 7899999 555677788899999997
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=5.6e-20 Score=208.16 Aligned_cols=284 Identities=12% Similarity=0.046 Sum_probs=193.8
Q ss_pred ceEEEecCCCC---CeeEEEEcCCCCCEEEEEeCC---------CcEEEEecCCCCeeEEEec---cCCCCeEEEEEccC
Q 007768 290 RLVHTWSGHTK---GVSAIRFFPKYGHLILSAGMD---------TKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCND 354 (590)
Q Consensus 290 ~~i~~l~gH~~---~V~~l~~sp~~g~~L~sgs~D---------g~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fspd 354 (590)
++...+.+|.. .|.+++|+|+ |++|++++.+ +.|.+||+ ..++. +.+. +|...+..++|+||
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~-~~~~~-~~l~~~~~~~~~~~~~~~SPd 124 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKI-PHGDP-QSLDPPEVSNAKLQYAGWGPK 124 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEES-SSCCC-EECCCTTCCSCCCSBCCBCSS
T ss_pred cEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEEC-CCCce-EeccCCccccccccccEECCC
Confidence 44566677765 4999999999 8999998774 77889999 45554 3333 45556899999999
Q ss_pred CCEEEEEecCCeEEEEECCCCcEEEEecCCCc-c------------------eEEEEecCCCCCcEEEEEECCC------
Q 007768 355 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-P------------------YVVKLNPDDDKQNILLAGMSDK------ 409 (590)
Q Consensus 355 g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~lvsg~~dg------ 409 (590)
|++|++++. +.|++||+.+++.......+.. . ..+.|+|++ ..|++++.++
T Consensus 125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg---~~la~~~~~~~~~~~~ 200 (723)
T 1xfd_A 125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG---TRLAYAAINDSRVPIM 200 (723)
T ss_dssp TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS---SEEEEEEEECTTSCEE
T ss_pred CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC---CEEEEEEECCCccceE
Confidence 999999886 8999999999887766544321 1 467777765 4566655432
Q ss_pred ----------------------------eEEEEeCCCCceEEEEcCc------CCceeEEEEeCCCCEEEEEeC----CC
Q 007768 410 ----------------------------KIVQWDMNTKEITQEYDQH------LGAVNTITFVDSNRRFVTSSD----DK 451 (590)
Q Consensus 410 ----------------------------~I~iwD~~t~~~~~~~~~h------~~~V~~i~~~p~~~~l~s~s~----Dg 451 (590)
.|++||+.+++....+..+ ...+.++.|+|+|++|++.+. +.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence 7999999998865666554 567899999999998877653 35
Q ss_pred cEEEEECCCCcEEEEeecCCCCce----eEEEEcCCCCEEEEE--EcCC------eEEEEE-cCCceeecccccccCccc
Q 007768 452 SLRVWEFGIPVVIKYISEPHMHSM----PSISLHPNTNWLAAQ--SLDN------QILIYS-TRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i----~~i~~sp~g~~la~~--s~dg------~I~iwd-~~~~~~~~~~~~~~~~~~ 518 (590)
.|++||+.++.....+...+...+ ..++|+|+|+.|+.. ..++ .|.+|| ...+.. .....+...
T Consensus 281 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~-- 357 (723)
T 1xfd_A 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-DNIQSITSG-- 357 (723)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-CCCCBSCCS--
T ss_pred EEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-cceeEeecC--
Confidence 799999998876655543333333 378999999977754 4566 466676 333220 001122211
Q ss_pred ccceE-EEEEcCCCCEEEEEcCC---CcEEEEeCCCC--eEEEEEec---CCCcEEEEEEcCCCCCEEEEEeCC
Q 007768 519 AGYAC-QVNFSPDGRFVMSGDGE---GKCWFWDWKSC--KVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 519 ~~~v~-~v~~spdg~~l~sgs~d---g~I~iwd~~t~--~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
...+. .++|+|||++|+..+.+ +.++||++... .....+.. |...+..++|+|++..++++++..
T Consensus 358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 12233 36899999999766554 78999988643 23333443 566788999999544444444433
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.1e-19 Score=180.55 Aligned_cols=238 Identities=13% Similarity=0.126 Sum_probs=174.8
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC-CeeEEEeccC-CCCeEEEEEccCCCEEEEEec--CCe--
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-GKCMRTYMGH-SKAVRDISFCNDGTKFLTASY--DKN-- 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~~~h-~~~V~~l~fspdg~~l~s~s~--Dg~-- 366 (590)
..+..|...|.+++|+|+ +++|++++ ++.|++||+ .. ++.......| ...|.+++|+|++++|++++. ++.
T Consensus 35 ~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSL-AGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSA 111 (297)
T ss_dssp EEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEES-SSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred eeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeC-CCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence 355678999999999999 88888887 789999999 45 6666666565 478899999999999999983 344
Q ss_pred EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-CceEEEEcCcCCceeEEEEeCCCCEEE
Q 007768 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
|.+|++.++. ...+........+.|++++. .+++++..++.+.+|++.. ......+..+...+.++.|+|++++|+
T Consensus 112 l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 112 IYLLPSTGGT-PRLMTKNLPSYWHGWSPDGK--SFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp EEEEETTCCC-CEECCSSSSEEEEEECTTSS--EEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEE
T ss_pred EEEEECCCCc-eEEeecCCCccceEECCCCC--EEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEE
Confidence 4445555555 34444444456667776543 4555888899999998632 233456667888999999999999888
Q ss_pred EEe-CCCcEEEEECC-CCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-----------CeEEEEEcCCceeeccccc
Q 007768 446 TSS-DDKSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----------NQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 446 s~s-~Dg~I~iwdl~-~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-----------g~I~iwd~~~~~~~~~~~~ 512 (590)
+++ .++.++||++. ....+..+. .+...+.+++|+|++++|++++.+ +.|.+||+.++.... ...
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~ 266 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET-LFD 266 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE-EEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee-eec
Confidence 766 58999999986 344444443 466788999999999999988876 569999998754321 122
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCC
Q 007768 513 FAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
+.++ ...+..++|+|+|++|++++.+
T Consensus 267 ~~~~--~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 267 LFGG--QGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEES--TTTSCSCCBCTTSSEEEEEEEC
T ss_pred cCCC--CcccccceECCCCCEEEEEEec
Confidence 2233 3456678999999999887755
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=1.6e-19 Score=213.21 Aligned_cols=275 Identities=12% Similarity=0.001 Sum_probs=210.8
Q ss_pred CCCCeeEEEEc-CCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC-CeEEEEEccCCCEEEEEecCCeEE-EEECCC
Q 007768 298 HTKGVSAIRFF-PKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK-AVRDISFCNDGTKFLTASYDKNIK-YWDTET 374 (590)
Q Consensus 298 H~~~V~~l~~s-p~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~-~V~~l~fspdg~~l~s~s~Dg~I~-vWd~~t 374 (590)
|...|.+++|+ |+ |++|++++ ++.|.+|++ ..+. ...+..|.. .+.+++|+ +|+.|++++.++.|. +|++.+
T Consensus 294 ~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 294 SIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDV-SGTY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp ECGGGGEEEEEECG-GGCEEEEE-TTEEEEECT-TSSB-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred cccccceeeecCCC-CCEEEEEE-cCEEEEEcC-CCCc-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 45679999999 99 88888777 789999998 3444 445677877 89999999 999999999888899 999998
Q ss_pred CcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC---
Q 007768 375 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK--- 451 (590)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg--- 451 (590)
++.............+.|+|++ ..|++++.++.|++||+.+++....+..|.+.+.+++|+|+|++|++++.++
T Consensus 369 ~~~~~l~~~~~~~~~~~~SpDG---~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 369 GKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp CCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred CCceEecCCccceeeeEECCCC---CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 8765544222445567777754 6788999999999999999998888878999999999999999999887654
Q ss_pred -------cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee-------e-----c----
Q 007768 452 -------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ-------L-----N---- 508 (590)
Q Consensus 452 -------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~-------~-----~---- 508 (590)
.|++||+.++. +..+. .+...+..++|+|+|++|++++.++...+|+...... + .
T Consensus 446 ~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 523 (1045)
T ss_dssp TCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred ccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCC
Confidence 89999998876 44443 4667788899999999999999887777776432111 0 0
Q ss_pred ------------------------ccccccCcccccceEEEEEcCCCCEEEE-------------EcCCCcEEEEeCCCC
Q 007768 509 ------------------------KKKRFAGHIVAGYACQVNFSPDGRFVMS-------------GDGEGKCWFWDWKSC 551 (590)
Q Consensus 509 ------------------------~~~~~~~~~~~~~v~~v~~spdg~~l~s-------------gs~dg~I~iwd~~t~ 551 (590)
....+.. ..+.+..++++|||.++++ .+....|++||+.++
T Consensus 524 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~--~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 524 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CccccCcCccccccccccccCHhHceEEcCC--CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 0001111 1355778999999988875 123557999999988
Q ss_pred eEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 552 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+..... ..+.+++|+| ++.+|++++.| .|++||
T Consensus 602 ~~~~l~----~~v~~~~~S~-DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 602 KVTEVK----NNLTDLRLSA-DRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp CEEEEE----EEEEEEEECT-TSCEEEEEETT-SCEEEE
T ss_pred cEEEee----cCcceEEECC-CCCEEEEEcCC-cEEEEe
Confidence 754333 5588999999 67788888766 799986
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=2.6e-18 Score=177.65 Aligned_cols=270 Identities=8% Similarity=0.094 Sum_probs=179.0
Q ss_pred CCEEEEEe----CCCcEEEEecCC-CCeeEEEeccCCCCeEEEEEccCCCEEEEEecC----CeEEEEECCC--CcE--E
Q 007768 312 GHLILSAG----MDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTET--GQV--I 378 (590)
Q Consensus 312 g~~L~sgs----~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D----g~I~vWd~~t--~~~--~ 378 (590)
..+++.|+ .++.|.+|.+.. .++.......+...+..++|+|+|++|++++.+ +.|.+|++.. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 356899998742 233322222277788899999999999999886 7999998865 443 3
Q ss_pred EEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE----EE--c--------CcCCceeEEEEeCCCCE
Q 007768 379 RTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ----EY--D--------QHLGAVNTITFVDSNRR 443 (590)
Q Consensus 379 ~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~----~~--~--------~h~~~V~~i~~~p~~~~ 443 (590)
.... ....+..+.+ + ...++++...++.|.+|++.....+. .+ . .+...+.+++|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~--d--g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--N--GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEECSSSCEEEEEE--C--SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred eEeccCCCCcEEEEE--C--CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3333 2333444444 2 22445555578999999997543221 11 1 11234588999999997
Q ss_pred EEEEe-CCCcEEEEECCCCcE------E------EEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceee--
Q 007768 444 FVTSS-DDKSLRVWEFGIPVV------I------KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL-- 507 (590)
Q Consensus 444 l~s~s-~Dg~I~iwdl~~~~~------~------~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~-- 507 (590)
|++++ .++.|.+|++..... + ..........+..++|+|+|++|++++ .++.|.+|++.++...
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 76655 578999999875431 1 223334556678999999999888877 6899999999765321
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcC--CCcEEEEeCC--CCe--EEEEEecCCCcEEEEEEcCCCCCEEEEEe
Q 007768 508 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWK--SCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~--dg~I~iwd~~--t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
........+ ......++|+|||++|++++. ++.|.+|++. +++ .+..+.. ...+.+++|+| ++++|++++
T Consensus 249 ~~~~~~~~~--~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~ 324 (361)
T 3scy_A 249 QTVAADTVN--AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVAC 324 (361)
T ss_dssp EEEESCSSC--CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEE
T ss_pred EEEecCCCC--CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEE
Confidence 111111221 233568999999999877665 4899999985 444 4555555 45678999999 666777666
Q ss_pred -CCCcEEEc
Q 007768 582 -WDGLIKYW 589 (590)
Q Consensus 582 -~Dg~I~iW 589 (590)
.++.|.+|
T Consensus 325 ~~~~~v~v~ 333 (361)
T 3scy_A 325 RDTNVIQIF 333 (361)
T ss_dssp TTTTEEEEE
T ss_pred CCCCCEEEE
Confidence 67899996
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=1.7e-19 Score=188.05 Aligned_cols=293 Identities=11% Similarity=0.014 Sum_probs=196.5
Q ss_pred ceEEEecCCCCCeeE-----EEEcCCCCCEEEEEeC-CCc--EEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEE
Q 007768 290 RLVHTWSGHTKGVSA-----IRFFPKYGHLILSAGM-DTK--VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~-----l~~sp~~g~~L~sgs~-Dg~--I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~ 361 (590)
..+..+..|...+.. .+|+|+ |+.|+.++. +|. |.+||+ ..++......++...+..+.|+|+|+.|+.+
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDL-NTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeC-CCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 455677777766666 889999 888887776 674 778888 5667666666676666678999999999999
Q ss_pred ecCCeEEEEECCCCcEEEEecCCCcce-EEEEecCCCCCcEEEEE----------------------ECCCeEEEEeCCC
Q 007768 362 SYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAG----------------------MSDKKIVQWDMNT 418 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvsg----------------------~~dg~I~iwD~~t 418 (590)
+.++.|.+||+.+++....+....... ...+....+. .+++.. ..+..|++||+.+
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 999999999999998776655443321 2333222222 344432 2347899999999
Q ss_pred CceEEEEcCcCCceeEEEEeC-CCCEEEEEeCC------CcEEEEECCCCcEEEEeecCCC-CceeEEEEcCCCCEEEEE
Q 007768 419 KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~D------g~I~iwdl~~~~~~~~~~~~~~-~~i~~i~~sp~g~~la~~ 490 (590)
++..... .+...+..+.|+| +++.|+.++.+ ..|.++|+..... ..+..... ..+..++|+|+|+.|+..
T Consensus 178 g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 178 GESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEE
Confidence 8755443 5667789999999 99998887763 3788888765543 33332222 357788999999977665
Q ss_pred EcC-C----eEEEEEcCCceeecccccccCcccc-cceEEEEEcCCCCEEEEE---------cCCCcEEEEeCCCCeEEE
Q 007768 491 SLD-N----QILIYSTRERFQLNKKKRFAGHIVA-GYACQVNFSPDGRFVMSG---------DGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 491 s~d-g----~I~iwd~~~~~~~~~~~~~~~~~~~-~~v~~v~~spdg~~l~sg---------s~dg~I~iwd~~t~~~~~ 555 (590)
+.. + .|++||+.++.... +..+.++... .....+.|+|||+.|+.. ..+..|++||+.+++..
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~- 333 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH- 333 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-
T ss_pred ecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-
Confidence 432 2 39999998765321 2222221000 001123799999988754 45678999999988764
Q ss_pred EEecCCC-----------cEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 556 TLKCHEG-----------VCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 556 ~l~~h~~-----------~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.+..|.. .+.+++|+|++..+++++..+|...||
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 334 RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 4555555 578899999544444455567877776
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.9e-18 Score=177.49 Aligned_cols=253 Identities=9% Similarity=0.160 Sum_probs=173.1
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEecCCCCe--eEEEeccCCCCeEEEEEccCCCEEEEEe-cCCeEEEE
Q 007768 296 SGHTKGVSAIRFFPKYGHLILSAGM--DTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYW 370 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~sgs~--Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vW 370 (590)
..+...+..++|+|+ +++++++.. ++.|.+|++ ..+. .+..+..+...+..++|+|+|++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~-~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQI-DGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEE-ETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEe-cCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 345677889999999 664444432 689999999 4444 4455566788899999999999998888 67999999
Q ss_pred ECC-CC--cEEEEecCC----------CcceEEEEecCCCCCcEEEEEECCCeEEEEeCC-CCceEE--EEcCc-CCcee
Q 007768 371 DTE-TG--QVIRTFSTG----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQ--EYDQH-LGAVN 433 (590)
Q Consensus 371 d~~-t~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-t~~~~~--~~~~h-~~~V~ 433 (590)
++. ++ ..+..+... ..+..+.+.+++ .+++++..++.|++|++. ++++.. .+..+ ...+.
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg---~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN---RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS---CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC---cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 996 33 233333221 124456777654 377777778999999998 554332 22222 33678
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEECCC--CcE--EEEeecCC-----CCceeEEEEcCCCCEEEE-EEcCCeEEEEEcC
Q 007768 434 TITFVDSNRRFVT-SSDDKSLRVWEFGI--PVV--IKYISEPH-----MHSMPSISLHPNTNWLAA-QSLDNQILIYSTR 502 (590)
Q Consensus 434 ~i~~~p~~~~l~s-~s~Dg~I~iwdl~~--~~~--~~~~~~~~-----~~~i~~i~~sp~g~~la~-~s~dg~I~iwd~~ 502 (590)
.++|+|+++++++ ...++.|.+|++.. +.. +..+.... ...+..++|+|+|++|++ ...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999996665 56788999999874 332 22222111 145788999999998754 5568999999986
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEE--eCCCCeEEE
Q 007768 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFW--DWKSCKVFR 555 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iw--d~~t~~~~~ 555 (590)
....+.....+..+ ...+..++|+|||++|++++. ++.|.+| |..++++..
T Consensus 271 ~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 271 ADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp GGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 33222222233222 234567999999999888775 4899999 556776653
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=8.1e-18 Score=173.91 Aligned_cols=264 Identities=11% Similarity=0.134 Sum_probs=179.7
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCC----CcEEEEecCCC-Ce--eEEEeccCCCCeEEEEEccCCCEEEEEe-cCCeEEE
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMD----TKVKIWDVVNS-GK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKY 369 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~D----g~I~iWd~~~~-~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~v 369 (590)
|...+..++|+|+ +++|++++.+ +.|.+|++... +. .+.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 7778899999999 8889888876 79999998543 43 33344445667788888 888887776 5789999
Q ss_pred EECCCCcEEEEe----c-CC----------CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc-------eE-----
Q 007768 370 WDTETGQVIRTF----S-TG----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-------IT----- 422 (590)
Q Consensus 370 Wd~~t~~~~~~~----~-~~----------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~-------~~----- 422 (590)
|++.....+..+ . .+ ..+..+.++|++. .+++++..++.|.+|++.... +.
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK--YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC--EEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 999754332211 1 11 1124577777542 455666668999999887543 21
Q ss_pred -EEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCcE--EEEeec--CCCCceeEEEEcCCCCEEEEEEcC--C
Q 007768 423 -QEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVV--IKYISE--PHMHSMPSISLHPNTNWLAAQSLD--N 494 (590)
Q Consensus 423 -~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~~--~~~~~~--~~~~~i~~i~~sp~g~~la~~s~d--g 494 (590)
.....+...+.+++|+|+++++++++ .++.|.+|++..+.. +..+.. .+......++|+|+|++|+++..+ +
T Consensus 203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 22233455678999999999887777 689999999986543 222221 223446799999999999777765 8
Q ss_pred eEEEEEcC--CceeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEE--eCCCCeEEEEE-ecCCCcEEEEE
Q 007768 495 QILIYSTR--ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFW--DWKSCKVFRTL-KCHEGVCIGCE 568 (590)
Q Consensus 495 ~I~iwd~~--~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iw--d~~t~~~~~~l-~~h~~~V~~v~ 568 (590)
.|.+|++. ++. +.....+.. ...+..++|+|+|++|++++ .++.|.+| |..++++.... ..+...+.|++
T Consensus 283 ~i~v~~~~~~~g~-~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~ 358 (361)
T 3scy_A 283 GVAIFKVDETNGT-LTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK 358 (361)
T ss_dssp EEEEEEECTTTCC-EEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred EEEEEEEcCCCCc-EEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence 99999986 222 111222221 23455799999999988887 67889996 55577765443 22445688888
Q ss_pred Ec
Q 007768 569 WH 570 (590)
Q Consensus 569 ~s 570 (590)
|.
T Consensus 359 ~~ 360 (361)
T 3scy_A 359 FV 360 (361)
T ss_dssp EE
T ss_pred Ec
Confidence 85
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=4.3e-18 Score=176.85 Aligned_cols=274 Identities=11% Similarity=0.117 Sum_probs=180.6
Q ss_pred EEEEEeCC--CcEEEEecC-CCCeeEE--Eec-cCCCCeEEEEEccCCCEEEEEecCCeEEEEECC-CCcEEEEec--CC
Q 007768 314 LILSAGMD--TKVKIWDVV-NSGKCMR--TYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFS--TG 384 (590)
Q Consensus 314 ~L~sgs~D--g~I~iWd~~-~~~~~~~--~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~-t~~~~~~~~--~~ 384 (590)
.|++|+.. +.|.+|++. .++.+.. ... .....+..++|+|+|++|++++.+ .|.+|++. +++...... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45566553 468887763 2343322 111 234568899999999999999988 99999997 777654332 11
Q ss_pred CcceEEEEecCCCCCc-EEEEEE-------------CCCeEEEEeCC-CCceEEEEc----CcCCceeEEEEeCCCCEEE
Q 007768 385 KIPYVVKLNPDDDKQN-ILLAGM-------------SDKKIVQWDMN-TKEITQEYD----QHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~-~lvsg~-------------~dg~I~iwD~~-t~~~~~~~~----~h~~~V~~i~~~p~~~~l~ 445 (590)
..+..+.+.+++ .. +++++. .++.+.+|++. .+++...+. .+...+.+++|+|+|++|+
T Consensus 83 g~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 83 GHPRANDADTNT--RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp SSGGGGCTTSCC--EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCccEEECCCC--CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 223334444433 22 344442 68999999997 466544333 2456799999999999888
Q ss_pred EEeC-CCcEEEEECC-CCcEE--EEeecC-CCCceeEEEEcCCCCEEEEEEc-CCeEEEEEcC--Cceee---ccccccc
Q 007768 446 TSSD-DKSLRVWEFG-IPVVI--KYISEP-HMHSMPSISLHPNTNWLAAQSL-DNQILIYSTR--ERFQL---NKKKRFA 514 (590)
Q Consensus 446 s~s~-Dg~I~iwdl~-~~~~~--~~~~~~-~~~~i~~i~~sp~g~~la~~s~-dg~I~iwd~~--~~~~~---~~~~~~~ 514 (590)
+++. ++.|++|++. ++... ..+..+ +...+..++|+|+|++|++++. ++.|.+|++. ++... .....+.
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 7764 6799999998 55542 223222 3566889999999999988775 6899999875 33221 1111221
Q ss_pred Cccc--cc------ceEEEE-EcCCCCEEEEEcCCC------cEEEEeCC-CCeEEE---EEecCCCcEEEEEEcCC--C
Q 007768 515 GHIV--AG------YACQVN-FSPDGRFVMSGDGEG------KCWFWDWK-SCKVFR---TLKCHEGVCIGCEWHPL--E 573 (590)
Q Consensus 515 ~~~~--~~------~v~~v~-~spdg~~l~sgs~dg------~I~iwd~~-t~~~~~---~l~~h~~~V~~v~~sp~--~ 573 (590)
.... .. .+..++ |+|||++|++++.+. .|.+|++. ++++.. .+..+...+..++|+|. +
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 1100 11 467899 999999988776432 89999996 676544 23345555678999994 4
Q ss_pred CCEEEEEeC-CCcEEEcC
Q 007768 574 QSKVATCGW-DGLIKYWD 590 (590)
Q Consensus 574 ~~~l~s~g~-Dg~I~iWD 590 (590)
+.+|++++. ++.|.||+
T Consensus 321 g~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TTEEEEECSSSCEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEE
Confidence 667888776 48999995
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.3e-18 Score=197.06 Aligned_cols=276 Identities=8% Similarity=0.032 Sum_probs=188.7
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC---CeEEEEEccCCCEEEEEec---------CCeEEEEE
Q 007768 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK---AVRDISFCNDGTKFLTASY---------DKNIKYWD 371 (590)
Q Consensus 304 ~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~---~V~~l~fspdg~~l~s~s~---------Dg~I~vWd 371 (590)
+++|+|+ +.+++ .+.|+.|++||+ ..++....+.+|.. .|.+++|||||++|++++. ++.|++||
T Consensus 20 ~~~~s~d-g~~~~-~~~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISG-QEYLH-QSADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSS-SEEEE-ECTTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCC-CeEEE-EcCCCCEEEEEc-CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 6789999 65555 456999999999 56777766666544 4999999999999998876 78999999
Q ss_pred CCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-cCcCCce-----------------e
Q 007768 372 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAV-----------------N 433 (590)
Q Consensus 372 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-~~h~~~V-----------------~ 433 (590)
+.+++.+...........+.|+|++. .|+.+ .++.|++||+.+++..+.. .++...| .
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~---~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGS---KLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCCccccceecCcccccceECCCCC---EEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 99998732222234466788888764 45555 4789999999988765432 2222222 5
Q ss_pred EEEEeCCCCEEEEEeCCC----------------------------------cEEEEECCCCcEE--EEee-----cCCC
Q 007768 434 TITFVDSNRRFVTSSDDK----------------------------------SLRVWEFGIPVVI--KYIS-----EPHM 472 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg----------------------------------~I~iwdl~~~~~~--~~~~-----~~~~ 472 (590)
++.|+|+|++|++++.|. .|++||+.++... ..+. ..+.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 899999999999987652 7889999876542 1221 1366
Q ss_pred CceeEEEEcCCCCEEEEEEcC----CeEEEEE----cCCceeecccc-cccCcccccceE-----EEEEcCCCCEEEE--
Q 007768 473 HSMPSISLHPNTNWLAAQSLD----NQILIYS----TRERFQLNKKK-RFAGHIVAGYAC-----QVNFSPDGRFVMS-- 536 (590)
Q Consensus 473 ~~i~~i~~sp~g~~la~~s~d----g~I~iwd----~~~~~~~~~~~-~~~~~~~~~~v~-----~v~~spdg~~l~s-- 536 (590)
..+.+++|+|+++++++.... ..|.+|| +.++....... ...++ ...+. .+.|+|||+.|+.
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS--SSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC--CceEccccCCccEECCCCCeEEEEE
Confidence 678999999998777765433 2488899 76654432221 00122 22232 5789999996544
Q ss_pred EcCCC--cEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC----CCcEEEcC
Q 007768 537 GDGEG--KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW----DGLIKYWD 590 (590)
Q Consensus 537 gs~dg--~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~----Dg~I~iWD 590 (590)
+..+| .|++||+.+++ ...+..+...+..+.++ ++..+++++.. ++.++||.
T Consensus 331 ~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred EccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44555 57888887776 44555566667887777 45544455444 47788873
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=4.3e-17 Score=166.51 Aligned_cols=269 Identities=12% Similarity=0.094 Sum_probs=182.2
Q ss_pred CCcceeecccccccccceeecCCccccccCCCccCCcceEEEecCCC-CCeeEEEEcCCCCCE-EEEEeCCCcEEEEecC
Q 007768 253 EDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHT-KGVSAIRFFPKYGHL-ILSAGMDTKVKIWDVV 330 (590)
Q Consensus 253 ~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~~l~gH~-~~V~~l~~sp~~g~~-L~sgs~Dg~I~iWd~~ 330 (590)
.....+......+.+.+.|-. ...+++.++..+. ..+..++|+|+ +++ ++++..++.|.+||+
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~-------------~~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~- 72 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDV-------------ASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDL- 72 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEET-------------TTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEET-
T ss_pred cCCCEEEEEeCCCCeEEEEEC-------------CCCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeC-
Confidence 334445555555655555522 1234556665443 35889999999 664 456667899999999
Q ss_pred CCCeeEEEeccC------CCCeEEEEEccCCCEEEEEecC------------CeEEEEECCCCc---EEEEecCCCcceE
Q 007768 331 NSGKCMRTYMGH------SKAVRDISFCNDGTKFLTASYD------------KNIKYWDTETGQ---VIRTFSTGKIPYV 389 (590)
Q Consensus 331 ~~~~~~~~~~~h------~~~V~~l~fspdg~~l~s~s~D------------g~I~vWd~~t~~---~~~~~~~~~~~~~ 389 (590)
.+++.+..+..+ ...+.+++|+|+|++|++++.+ +.|.+||+.+++ .+..+.....+..
T Consensus 73 ~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (349)
T 1jmx_B 73 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL 152 (349)
T ss_dssp TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC
T ss_pred CCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccc
Confidence 567777666532 2347899999999999998865 899999998854 3344444555666
Q ss_pred EEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC------------------------ceeEEEEeCCCCE--
Q 007768 390 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG------------------------AVNTITFVDSNRR-- 443 (590)
Q Consensus 390 ~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~------------------------~V~~i~~~p~~~~-- 443 (590)
+.+.+++ . +++++ +.|++||+.+++.+..+..+.. ...++.+++++..
T Consensus 153 ~~~s~dg---~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 153 MRAADDG---S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 226 (349)
T ss_dssp EEECTTS---C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred eeECCCC---c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence 7777754 3 44443 4499999999988877754320 2334555544321
Q ss_pred ---------EEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccc
Q 007768 444 ---------FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 444 ---------l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
+......+.+++|++ ......+..++++| ++++++++ ++.|.+||+.++........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~- 293 (349)
T 1jmx_B 227 ATADLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL- 293 (349)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-
T ss_pred cccccceeEEEEeccCCcEEeccc----------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-
Confidence 112223344444443 22455788999999 99999888 88999999988765433321
Q ss_pred cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC
Q 007768 514 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 560 (590)
Q Consensus 514 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h 560 (590)
...+..++|+|+|++|++++.++.|.+||+.+++.+..+..+
T Consensus 294 -----~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 294 -----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp -----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred -----CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 123457999999999998888999999999999999988765
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=4.7e-18 Score=180.98 Aligned_cols=201 Identities=12% Similarity=0.153 Sum_probs=151.2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC-------C--eeEE-----EeccCCCCeEEEEEccCCCEEE----E
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-------G--KCMR-----TYMGHSKAVRDISFCNDGTKFL----T 360 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~-------~--~~~~-----~~~~h~~~V~~l~fspdg~~l~----s 360 (590)
...++.|+++++ +.+|++++.++ |+||+.... . ..+. ....|...|.+++|+|+|++|+ +
T Consensus 36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345899999999 78999999888 899875210 0 0111 1123567899999999999999 7
Q ss_pred EecCCeEEEEECCCC--------cE---EEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCc
Q 007768 361 ASYDKNIKYWDTETG--------QV---IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 428 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~--------~~---~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h 428 (590)
|+.|+.|+|||+.++ +. +..+.. ...+..++|+|. ...+|++++.||.|++||++++..+.....|
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT--VPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS--CTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC--CCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 888999999998765 22 222221 334566777765 3478999999999999999999777777788
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC------CCCceeEEEEcCCCCEEEEEE-cCC------e
Q 007768 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQS-LDN------Q 495 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~------~~~~i~~i~~sp~g~~la~~s-~dg------~ 495 (590)
...|++++|+|++++|++|+.||.|++||++ ......+..+ |...+.+++|++++.++++.+ .+| .
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 9999999999999999999999999999998 4444444321 223789999999888776543 333 3
Q ss_pred EEEEEcCCc
Q 007768 496 ILIYSTRER 504 (590)
Q Consensus 496 I~iwd~~~~ 504 (590)
+++|+++..
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 899998754
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=2.3e-17 Score=182.16 Aligned_cols=231 Identities=10% Similarity=0.079 Sum_probs=165.4
Q ss_pred CCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEEC---CCeEEEEeCCC
Q 007768 343 SKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS---DKKIVQWDMNT 418 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~---dg~I~iwD~~t 418 (590)
..+|.+++|+|||++|++++. ||+++||++.+++..+.. ......+....++++ .+++++.. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt-~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN-REPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC-SSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee-cccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 567999999999999999887 999999999766655433 333223333444433 56776664 45455554432
Q ss_pred ---CceEEEEcCcCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-
Q 007768 419 ---KEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD- 493 (590)
Q Consensus 419 ---~~~~~~~~~h~~~V~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d- 493 (590)
+... .+.. ...+...+|+|+++. +++++.++.+.+||+.++........ .. .+++|+|+|++|++++.+
T Consensus 98 ~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~---~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 98 SRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG---FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp TSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS---CEEEEEEETTEEEEEEEEE
T ss_pred cCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC---ceEEECCCCCEEEEEEEcC
Confidence 2222 3332 233456788888863 33444445566999988765544432 22 789999999999988877
Q ss_pred ---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC--cEEEEeCCCCeEEEEEecCCCcEEEEE
Q 007768 494 ---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 494 ---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg--~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+.|++||+.++... .+..+ ...+..++|||||++|++++.+| .|++||+.++++. .+..|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~~----~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLR----VFDSG--EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR 244 (582)
T ss_dssp TTEEEEEEEETTTCCCE----EECCS--SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred CCCeEEEEEcCCCCCce----EeecC--CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence 78999998776432 23334 35568899999999999888888 8999999999888 7777877777677
Q ss_pred --------EcCCCCCEEEEEeCCCcEEEcC
Q 007768 569 --------WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 --------~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
|+|++ .++++++.||.++||+
T Consensus 245 ~~~~~~~~~spdg-~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 245 PTAITWLGYLPDG-RLAVVARREGRSAVFI 273 (582)
T ss_dssp CSEEEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred hccccceeEcCCC-cEEEEEEcCCcEEEEE
Confidence 99955 8999999999999995
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=2.7e-17 Score=171.24 Aligned_cols=284 Identities=12% Similarity=0.032 Sum_probs=183.8
Q ss_pred eEEEecCCCCC-----eeEEEEcCCCCCEEEEEeCC---CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEe
Q 007768 291 LVHTWSGHTKG-----VSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 291 ~i~~l~gH~~~-----V~~l~~sp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s 362 (590)
.+..+..+... +.+++|+|+ |++|+.+... ..|.+|++ ..++......++......+.|+|+|++|+.++
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~ 99 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNL-ETQQAVQLTEGKGDNTFGGFISTDERAFFYVK 99 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTTEEEECCCSSCBCTTTCEECTTSSEEEEEE
T ss_pred ceEEEecCCCCccceeeecCcCCCC-CCEEEEEEecCCCceEEEEEC-CCCcEEEeecCCCCccccceECCCCCEEEEEE
Confidence 34445444333 788899999 7777666443 36888888 45554443333333333488999999999999
Q ss_pred cCCeEEEEECCCCcEEEEecCCCcce-E---EEE--------------ecCCCCCcEEEEE-----ECCCeEEEEeCCCC
Q 007768 363 YDKNIKYWDTETGQVIRTFSTGKIPY-V---VKL--------------NPDDDKQNILLAG-----MSDKKIVQWDMNTK 419 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~~~~~-~---~~~--------------~~~~~~~~~lvsg-----~~dg~I~iwD~~t~ 419 (590)
.++.|.+||+.+++....+....... . +.+ ...++. ..++.+ ..+..|++||+.++
T Consensus 100 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 100 NELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred cCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCC
Confidence 99999999999988766554332210 1 111 111111 222222 35678999999988
Q ss_pred ceEEEEcCcCCceeEEEEeC-CCCEEEEEeCC------CcEEEEECCCCcEEEEeecCC-CCceeEEEEcCCCCEEEEEE
Q 007768 420 EITQEYDQHLGAVNTITFVD-SNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 420 ~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~D------g~I~iwdl~~~~~~~~~~~~~-~~~i~~i~~sp~g~~la~~s 491 (590)
+..... .+...+..+.|+| ++..|+.++.+ ..|.+||+...... .+.... ...+..++|+|+|++|+..+
T Consensus 179 ~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (396)
T 3c5m_A 179 ELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVS 256 (396)
T ss_dssp CEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred cEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEe
Confidence 765554 4667889999999 78877776653 36888888665433 232211 33577899999999887776
Q ss_pred cC-----CeEEEEEcCCceeecccccccCcccccceEEEEEcC-CCCEEEEEc----------------CCCcEEEEeCC
Q 007768 492 LD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGD----------------GEGKCWFWDWK 549 (590)
Q Consensus 492 ~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs----------------~dg~I~iwd~~ 549 (590)
.+ +.|++||+.++.... +..+.+ .. +.|+| +|++|++++ .++.|++||+.
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~-l~~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 257 YFKGQTDRVIYKANPETLENEE-VMVMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp EETTTCCEEEEEECTTTCCEEE-EEECCS------EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred cCCCCccceEEEEECCCCCeEE-eeeCCC------CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 54 449999997754322 111111 12 78999 999888754 34789999998
Q ss_pred CCeEEEEEecCCC-----------cEEEEEEcCCCCCEEEEEe-CCCcEEEc
Q 007768 550 SCKVFRTLKCHEG-----------VCIGCEWHPLEQSKVATCG-WDGLIKYW 589 (590)
Q Consensus 550 t~~~~~~l~~h~~-----------~V~~v~~sp~~~~~l~s~g-~Dg~I~iW 589 (590)
+++.. .+..+.. .+..++|+| ++..|+.++ .++...||
T Consensus 329 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 329 AKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTBCC-EEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEE
T ss_pred cCceE-EccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEE
Confidence 88754 3444544 256789999 555665555 46666665
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=4.1e-16 Score=161.86 Aligned_cols=268 Identities=13% Similarity=0.149 Sum_probs=193.7
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCeeEEEeccC------CCCeEEEEEcc
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH------SKAVRDISFCN 353 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h------~~~V~~l~fsp 353 (590)
+++.++..+..+ .++|+|+ +++|++++ .++.|.+||+ ...+.+..+... ......++|+|
T Consensus 42 ~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~-~t~~~~~~i~~~~~~~~~g~~p~~i~~sp 117 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDA-DKLTFEKEISLPPKRVQGLNYDGLFRQTT 117 (361)
T ss_dssp CEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEET-TTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred eEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEEC-cCCcEEEEEEcCccccccCCCcceEEECC
Confidence 456677777666 8999999 88888876 3678999998 567777776532 34577899999
Q ss_pred CCCEEEEEec--CCeEEEEECCCCcEEEE-ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-CceEEEE----
Q 007768 354 DGTKFLTASY--DKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEY---- 425 (590)
Q Consensus 354 dg~~l~s~s~--Dg~I~vWd~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-~~~~~~~---- 425 (590)
+|++|+++.. ++.|.+||+.+++.+.. +..+... .+.+.|.+ ...+++.+.||.+.+|++.. ++.....
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-~v~~~p~~--~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~ 194 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-SVIPQPNR--PRSFMTICGDGGLLTINLGEDGKVASQSRSKQ 194 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-EEEECTTS--SSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-eeEEcCCC--CeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence 9999999875 58999999999999888 7654432 23455544 26788899999999999865 5544221
Q ss_pred --cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEeecCC---------CCceeEEEEcCCCCEEEEEEc
Q 007768 426 --DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPH---------MHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 426 --~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~~~---------~~~i~~i~~sp~g~~la~~s~ 492 (590)
.....++ .+.+.+++..++..+.++.|.++|+.... ....+.... ......++++|+++.++++..
T Consensus 195 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 195 MFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp CSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred eEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 1122222 23446777788888889999999986543 222221100 011223789999888877654
Q ss_pred -----------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC--eEEEEEec
Q 007768 493 -----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--KVFRTLKC 559 (590)
Q Consensus 493 -----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~--~~~~~l~~ 559 (590)
.+.|.+||+.+.+.+..+. .+ . +..++|+|||++|++++. +.|.+||..++ +.+.++..
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~~~v~~i~---~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTKQRVARIP---GR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTTEEEEEEE---CT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred cCCCcccccCCCceEEEEECCCCcEEEEEe---cC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 3589999999876654432 22 2 667999999999999887 99999999999 99999877
Q ss_pred CCCcEEEEEEcCCC
Q 007768 560 HEGVCIGCEWHPLE 573 (590)
Q Consensus 560 h~~~V~~v~~sp~~ 573 (590)
+......++++|++
T Consensus 346 ~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 346 AAEASLQVQFHPVG 359 (361)
T ss_dssp SCSSEEEEEECCCS
T ss_pred CCCCcEEEEecCCC
Confidence 77778999999943
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=8.9e-18 Score=190.16 Aligned_cols=285 Identities=12% Similarity=0.088 Sum_probs=186.7
Q ss_pred ceEEEecCCCC---CeeEEEEcCCCCCEEEEEeC---------CCcEEEEecCCCCeeE--EEeccCCCCeEEEEEccCC
Q 007768 290 RLVHTWSGHTK---GVSAIRFFPKYGHLILSAGM---------DTKVKIWDVVNSGKCM--RTYMGHSKAVRDISFCNDG 355 (590)
Q Consensus 290 ~~i~~l~gH~~---~V~~l~~sp~~g~~L~sgs~---------Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~l~fspdg 355 (590)
+....+.+|.. .|.+++|+|+ |++|++++. ++.|++||+ .+++.+ ..+ ...+.+++|||||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~d~-~~g~~~~~~~l---~~~~~~~~~SPDG 121 (719)
T 1z68_A 47 QSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIYDL-SNGEFVRGNEL---PRPIQYLCWSPVG 121 (719)
T ss_dssp CEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEET-TTTEECCSSCC---CSSBCCEEECSST
T ss_pred cEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEEEC-CCCccccceec---CcccccceECCCC
Confidence 34445555543 4999999999 899988876 789999999 566552 222 3568999999999
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEecCCCcc-------------------eEEEEecCCCCCcEEEEEECCC-------
Q 007768 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-------------------YVVKLNPDDDKQNILLAGMSDK------- 409 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~lvsg~~dg------- 409 (590)
+.|+++. ++.|++|++.+++.......+... ..+.|+|++ ..|++++.|.
T Consensus 122 ~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG---~~la~~~~d~~~~~~~~ 197 (719)
T 1z68_A 122 SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG---KFLAYAEFNDTDIPVIA 197 (719)
T ss_dssp TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS---SEEEEEEEECTTSCEEE
T ss_pred CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC---CEEEEEEECCCCCceEE
Confidence 9999886 789999999998876544333211 367787765 4566665442
Q ss_pred ---------------------------eEEEEeCCCCceE--EE------EcCcCCceeEEEEeCCCCEEEEEeCC----
Q 007768 410 ---------------------------KIVQWDMNTKEIT--QE------YDQHLGAVNTITFVDSNRRFVTSSDD---- 450 (590)
Q Consensus 410 ---------------------------~I~iwD~~t~~~~--~~------~~~h~~~V~~i~~~p~~~~l~s~s~D---- 450 (590)
.|++||+.+++.. .. +..|...+.+++|+|+++++++....
T Consensus 198 ~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~ 277 (719)
T 1z68_A 198 YSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNV 277 (719)
T ss_dssp EEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTE
T ss_pred eeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCe
Confidence 7899999988653 11 23577789999999998766664432
Q ss_pred CcEEEEE----CCCCcEEEEee---cCCCCcee-----EEEEcCCCCEEEE--EEcCC--eEEEEEcCCceeeccccccc
Q 007768 451 KSLRVWE----FGIPVVIKYIS---EPHMHSMP-----SISLHPNTNWLAA--QSLDN--QILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 451 g~I~iwd----l~~~~~~~~~~---~~~~~~i~-----~i~~sp~g~~la~--~s~dg--~I~iwd~~~~~~~~~~~~~~ 514 (590)
..|.+|| +.++.....+. ..+...+. .+.|+|+|+.|+. ...++ .|.+|++.++. . ..+.
T Consensus 278 ~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~---~~lt 353 (719)
T 1z68_A 278 SVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-A---IQIT 353 (719)
T ss_dssp EEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-C---EECS
T ss_pred EEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-e---Eecc
Confidence 2488899 66554432221 23455555 7899999996654 33455 46666765543 1 1222
Q ss_pred CcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCC--CeE-EEEEec----CCCcEEEEEEcCCCCCEEEEEeC
Q 007768 515 GHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKS--CKV-FRTLKC----HEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t--~~~-~~~l~~----h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
.+ ...+..+.++ +++.|+..+.+ +.+.+|.+.. +.. ...+.. |...+..+.|+|++..++++++.
T Consensus 354 ~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~ 430 (719)
T 1z68_A 354 SG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYG 430 (719)
T ss_dssp CS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECC
T ss_pred cC--ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCC
Confidence 22 2235566667 77777666554 7788887653 421 233332 55677889999965555556654
Q ss_pred C--CcEEEcC
Q 007768 583 D--GLIKYWD 590 (590)
Q Consensus 583 D--g~I~iWD 590 (590)
+ ..+.+||
T Consensus 431 ~~~p~~~l~d 440 (719)
T 1z68_A 431 PGIPISTLHD 440 (719)
T ss_dssp BSSCEEEEEC
T ss_pred CCCCeEEEEE
Confidence 4 3466664
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=2.9e-16 Score=162.93 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=167.9
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccC-CCCeEEEEEccCCCE--EEEEe------------
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTK--FLTAS------------ 362 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~--l~s~s------------ 362 (590)
+...+..++|+|+ +++|++++.+ .|.+|++..++++....... .+.+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 4457889999999 8889888887 99999994256554433211 123667999999994 45553
Q ss_pred -cCCeEEEEECC-CCcEEEEec-----CCCcceEEEEecCCCCCcEEEEEE-CCCeEEEEeCC-CCceE--EEEc--CcC
Q 007768 363 -YDKNIKYWDTE-TGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMN-TKEIT--QEYD--QHL 429 (590)
Q Consensus 363 -~Dg~I~vWd~~-t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~-t~~~~--~~~~--~h~ 429 (590)
.++.+.+|++. .++....+. ....+..+.+++++ .+++++. .++.|++||+. +++.. ..+. .|.
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG---~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE---TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS---SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC---CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466554433 33456677777765 3455554 47899999998 77653 3333 245
Q ss_pred CceeEEEEeCCCCEEEEEeC-CCcEEEEECC--CCcEE---EEeec-CC-----CC------ceeEEE-EcCCCCEEEEE
Q 007768 430 GAVNTITFVDSNRRFVTSSD-DKSLRVWEFG--IPVVI---KYISE-PH-----MH------SMPSIS-LHPNTNWLAAQ 490 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~--~~~~~---~~~~~-~~-----~~------~i~~i~-~sp~g~~la~~ 490 (590)
..+..++|+|+++++++++. ++.|.+|++. ++... ..+.. +. .. .+..++ |+|+|++|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 67899999999999888775 6899999875 34432 12221 11 11 478899 99999998877
Q ss_pred EcC-C-----eEEEEEcC-CceeecccccccCcccccceEEEEEcC---CCCEEEEEcCC-CcEEEEeCCCC
Q 007768 491 SLD-N-----QILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGDGE-GKCWFWDWKSC 551 (590)
Q Consensus 491 s~d-g-----~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs~d-g~I~iwd~~t~ 551 (590)
..+ + .|.+|++. ++...........+ ......++|+| +|++|++++.+ +.|.+|++...
T Consensus 273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 653 3 89999986 33321110011111 11233588999 89999998864 89999998765
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.74 E-value=3.4e-16 Score=166.61 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=142.6
Q ss_pred CCCCCeeEEEEcCCCCCEEE----EEeCCCcEEEEecCCC-----C--e---eEEEeccCCCCeEEEEEccC-CCEEEEE
Q 007768 297 GHTKGVSAIRFFPKYGHLIL----SAGMDTKVKIWDVVNS-----G--K---CMRTYMGHSKAVRDISFCND-GTKFLTA 361 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~----sgs~Dg~I~iWd~~~~-----~--~---~~~~~~~h~~~V~~l~fspd-g~~l~s~ 361 (590)
.|...|++++|+|+ +++|+ +|+.|+.|+|||+... . + .+..+.+|...|.+++|+|+ +.+|+++
T Consensus 90 ~~~~~v~~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 46788999999999 88888 7889999999998421 1 1 25667789999999999997 8899999
Q ss_pred ecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC-------Ccee
Q 007768 362 SYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-------GAVN 433 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~-------~~V~ 433 (590)
+.||+|++||++++..+..... ...+.+++|++++ .+|++|+.||.|++||++ ++....+..|. ..|.
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg---~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG---KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS---SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC---CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 9999999999999876554433 3456777887764 679999999999999998 66666655443 3899
Q ss_pred EEEEeCCCCEEEEE-eCCC------cEEEEECCCCc-----EEEEeecC------CCCceeEEEEcCCCCEEEEEEcC-C
Q 007768 434 TITFVDSNRRFVTS-SDDK------SLRVWEFGIPV-----VIKYISEP------HMHSMPSISLHPNTNWLAAQSLD-N 494 (590)
Q Consensus 434 ~i~~~p~~~~l~s~-s~Dg------~I~iwdl~~~~-----~~~~~~~~------~~~~i~~i~~sp~g~~la~~s~d-g 494 (590)
++.|++++.++++. +.+| .+++|+++... ....+... ...+...+.+.++.+++++++.. +
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~ 324 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST 324 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence 99999988766543 3443 38999997542 22222211 11222233444666776666543 4
Q ss_pred eEEEEEc
Q 007768 495 QILIYST 501 (590)
Q Consensus 495 ~I~iwd~ 501 (590)
.|.++..
T Consensus 325 dv~vl~~ 331 (434)
T 2oit_A 325 EVSILAR 331 (434)
T ss_dssp BCEEEEE
T ss_pred ceeEEEe
Confidence 4555543
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=2.4e-15 Score=149.89 Aligned_cols=238 Identities=11% Similarity=0.220 Sum_probs=173.8
Q ss_pred cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC-------CcceEEEEecCCCCCcEEEEEEC-CCeEE
Q 007768 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-------KIPYVVKLNPDDDKQNILLAGMS-DKKIV 412 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-------~~~~~~~~~~~~~~~~~lvsg~~-dg~I~ 412 (590)
++-..+.+++++++++++++.+.++.|.+||.. ++.+..+... ..+..+++.. ..+.++++... ++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~--~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR--NSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET--TTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEc--CCCeEEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 6666665431 2344555532 23355555543 89999
Q ss_pred EEeCCCCceEEEEc-CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCceeEEEEcCCCCEEEEE
Q 007768 413 QWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 413 iwD~~t~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~la~~ 490 (590)
+|| .+++.+..+. .+...+.++++.++++.+++...++.|++||.. ...+..+.. .+...+..++++++++++++.
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 999 5677776664 344678999999999988888888999999965 444444432 344568899999999988877
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-cEEEEeCCCCeEEEEEecCCC--cEEEE
Q 007768 491 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEG--VCIGC 567 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~~t~~~~~~l~~h~~--~V~~v 567 (590)
+.++.|++|+.... .+.. +........+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.++
T Consensus 182 ~~~~~i~~~~~~g~-~~~~---~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQ-YLRQ---IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETTCC-EEEE---ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCCCC-EEEE---EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence 78899999998543 2221 21111124567899999999988888776 9999994 6777777766543 47899
Q ss_pred EEcCCCCCEEEEEeCCCcEEEcC
Q 007768 568 EWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 568 ~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+++| ++.++++ +.|+.|++|+
T Consensus 257 ~~~~-~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 257 ALMD-DGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EEET-TTEEEEE-ETTTEEEEEE
T ss_pred EECC-CCcEEEE-CCCCeEEEEE
Confidence 9999 5666666 6799999995
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=2.9e-16 Score=178.61 Aligned_cols=270 Identities=11% Similarity=0.034 Sum_probs=180.4
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCC-----eEEEEEccCCCEEEEEecC---------Ce
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-----VRDISFCNDGTKFLTASYD---------KN 366 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-----V~~l~fspdg~~l~s~s~D---------g~ 366 (590)
...+++|+|+ +.+|+++ |+.|++||+ .++++...+.+|... ..+++|||||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~d-g~~~~~~--~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISD-HEYLYKQ--ENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSS-SEEEEEE--TTEEEEEET-TTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCC-CcEEEEc--CCcEEEEEC-CCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 4668899999 7888886 999999999 677777777777643 2458899999999998876 56
Q ss_pred EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-cCcCCc--------------
Q 007768 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGA-------------- 431 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-~~h~~~-------------- 431 (590)
+.+||+.++++..............|+|++. .|+.+ .++.|++||+.+++..+.. .++...
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~---~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCC---EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 7799999998765433345566778888764 35554 5789999999988755422 222222
Q ss_pred ---eeEEEEeCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--EEEEe
Q 007768 432 ---VNTITFVDSNRRFVTSSDDK------------------------------------SLRVWEFGI---PV--VIKYI 467 (590)
Q Consensus 432 ---V~~i~~~p~~~~l~s~s~Dg------------------------------------~I~iwdl~~---~~--~~~~~ 467 (590)
...+.|+|+|++|+.++.|. .|++||+.+ +. ....+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 23589999999999875322 488899887 62 23333
Q ss_pred ec-----CCCCceeEEEEcCCCCEEEEEEcC----CeEEEEEcCCce----eecccccc-cCcccccce-----EEEEEc
Q 007768 468 SE-----PHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERF----QLNKKKRF-AGHIVAGYA-----CQVNFS 528 (590)
Q Consensus 468 ~~-----~~~~~i~~i~~sp~g~~la~~s~d----g~I~iwd~~~~~----~~~~~~~~-~~~~~~~~v-----~~v~~s 528 (590)
.. .+...+..++|+|+|++++..... ..|.+||+.++. +......+ .++ ..++ ..+.|+
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~--~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST--TGWVGRFRPSEPHFT 327 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS--SSCSSSSSCCCCEEC
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC--CceEccCcCCCceEc
Confidence 32 266678999999999977665433 369999988765 22111110 112 1222 257899
Q ss_pred CCCCEEE-EEc-CC--CcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 529 PDGRFVM-SGD-GE--GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 529 pdg~~l~-sgs-~d--g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
|||+.|+ ..+ .+ ..|++||+.++....... ....|..+.+ +++..+++++..
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSSEEEEEESC
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCCEEEEEEec
Confidence 9999876 554 33 468889988776554333 3445665543 324444444443
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=5.2e-16 Score=173.85 Aligned_cols=286 Identities=7% Similarity=-0.026 Sum_probs=192.5
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEE--eCCCcEEEEecCCCCeeEEEeccCCCCeE---------EEEEc--cCCCE-E
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSA--GMDTKVKIWDVVNSGKCMRTYMGHSKAVR---------DISFC--NDGTK-F 358 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sg--s~Dg~I~iWd~~~~~~~~~~~~~h~~~V~---------~l~fs--pdg~~-l 358 (590)
..+.+|...|..++|+++ .-++++. +.++...||.. ..+...+.+..|...+. ...|+ |||+. |
T Consensus 17 ~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 346689999999999987 5566666 55889999997 34455667777777766 66676 99998 7
Q ss_pred EEEec-CCeEEEEECC--C-CcEEEEecC------CCcceEEEEecCCCCCcEEEEEECC----------CeEEEEeCCC
Q 007768 359 LTASY-DKNIKYWDTE--T-GQVIRTFST------GKIPYVVKLNPDDDKQNILLAGMSD----------KKIVQWDMNT 418 (590)
Q Consensus 359 ~s~s~-Dg~I~vWd~~--t-~~~~~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~d----------g~I~iwD~~t 418 (590)
+.++. +..|.+|++. . +... .+.. ......+.|+|++ ..|++++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPER---GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTT---TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCC---CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 76554 5667777776 3 4433 3332 2234466777765 456666655 5899999988
Q ss_pred ------CceEEEEc-CcCCceeEEEEeCCCCEEEEEeCC--------CcEEEEECC-CC--cEEEEeecCCCCceeEEEE
Q 007768 419 ------KEITQEYD-QHLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFG-IP--VVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 419 ------~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~D--------g~I~iwdl~-~~--~~~~~~~~~~~~~i~~i~~ 480 (590)
++. ..+. .+...+..+.|+|+|++|+.++.+ ..|++||+. ++ .....+...+...+..+.|
T Consensus 171 ~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 171 SAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp TTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred CccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 554 4444 556788899999999999988754 379999998 45 2344444445678899999
Q ss_pred cCCCCEEEEEEcCC--eEEEEEcCCceeecccccccCcc----cccceEEEEEcCCCCEEEEEcCCCcEEEE--eCCCCe
Q 007768 481 HPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFW--DWKSCK 552 (590)
Q Consensus 481 sp~g~~la~~s~dg--~I~iwd~~~~~~~~~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~dg~I~iw--d~~t~~ 552 (590)
+|+|++++++..++ .|.+|++.++.... +....... ....+..++|+|+++++++++. +.++|| |+.+++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 99999888877788 56666664443221 11111100 0001346899999999999998 998888 666665
Q ss_pred EEEEEecCCCcEEEE-EEcCCCCCEEEEEeCCCcEEEc
Q 007768 553 VFRTLKCHEGVCIGC-EWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 553 ~~~~l~~h~~~V~~v-~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+..+..|.+.+..+ .+.+ +.-++++++.+....||
T Consensus 328 -~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVV 363 (662)
T ss_dssp -EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEE
T ss_pred -EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEE
Confidence 56777787777776 5543 22234444555444444
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=3.5e-15 Score=148.74 Aligned_cols=241 Identities=15% Similarity=0.313 Sum_probs=175.9
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec------cCCCCeEEEEEc-cCCCEEEEEec-CCeEE
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM------GHSKAVRDISFC-NDGTKFLTASY-DKNIK 368 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~------~h~~~V~~l~fs-pdg~~l~s~s~-Dg~I~ 368 (590)
+|-..+.+|+++++ +.++++...++.|.+||. .+..+..+. +|...+.++++. ++++++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~--~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDK--EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECT--TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCC-CCEEEEECCCCEEEEECC--CCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 45567999999998 888888888999999997 366666653 244678999994 67766666543 79999
Q ss_pred EEECCCCcEEEEecCC--CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc--CcCCceeEEEEeCCCCEE
Q 007768 369 YWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~--~h~~~V~~i~~~p~~~~l 444 (590)
+|| .+++.+..+... ..+..+.+.+++ .++++...++.|++||.. ++.+..+. .+...+.+|+++++++.+
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKG---RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTS---CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCC---CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 999 667777776543 345566666543 577777778999999964 55555553 345678999999999888
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeec-CCCCceeEEEEcCCCCEEEEEEcCC-eEEEEEcCCceeecccccccCcccccce
Q 007768 445 VTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~la~~s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
++.+.++.|++||... ..+..+.. .+...+..++++++|+++++...++ .|.+|+.... .+... ..+.....+
T Consensus 179 v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~~~---~~~~~~~~~ 253 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISAL---ESKVKHAQC 253 (286)
T ss_dssp EEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEE---EESSCCSCE
T ss_pred EEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEEEE---cccCCCCcc
Confidence 8888899999999754 44444432 2235688999999999888887776 9999996543 22222 222222346
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
..++++|+|+++++ +.++.|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 68999999987777 56899999998654
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=8.5e-16 Score=159.45 Aligned_cols=265 Identities=13% Similarity=0.125 Sum_probs=186.0
Q ss_pred CCEEEEEe------CCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEec----------CCeEEEEECCCC
Q 007768 312 GHLILSAG------MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETG 375 (590)
Q Consensus 312 g~~L~sgs------~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~----------Dg~I~vWd~~t~ 375 (590)
++++++.. .|+.|.+||. .+++.+..+..+..+ .++|+|+|++|++++. ++.|.+||+.++
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDY-TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEET-TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCEEEEECCCCCccccCeEEEEEC-CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 44555543 3789999998 577788887776655 8999999999998863 678999999999
Q ss_pred cEEEEecCC-------CcceEEEEecCCCCCcEEEEEE-C-CCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCC-CEE
Q 007768 376 QVIRTFSTG-------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSN-RRF 444 (590)
Q Consensus 376 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~iwD~~t~~~~~~-~~~h~~~V~~i~~~p~~-~~l 444 (590)
+.+..+... ..+..+.+++++ .+|+++. . ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg---~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDG---KFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSF 166 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTS---SEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCC---CEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeE
Confidence 998887643 456677888765 4565554 3 68999999999988877 542 2 22335667765 688
Q ss_pred EEEeCCCcEEEEECCC-CcEEEEee-----cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee--ccccccc--
Q 007768 445 VTSSDDKSLRVWEFGI-PVVIKYIS-----EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL--NKKKRFA-- 514 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~-~~~~~~~~-----~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~--~~~~~~~-- 514 (590)
++.+.||.+.+|++.. +....... .....+ ..+.+++++..++..+.++.|.++|+...... .......
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence 8899999999999865 44332211 111112 12334567777777888999999998643211 0000000
Q ss_pred ----CcccccceEEEEEcCCCCEEEEEcC-----------CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEE
Q 007768 515 ----GHIVAGYACQVNFSPDGRFVMSGDG-----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 515 ----~~~~~~~v~~v~~spdg~~l~sgs~-----------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
+.. ......++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+| ++++|++
T Consensus 246 ~~~~~~~-p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v 321 (361)
T 2oiz_A 246 DKAKNWV-PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLT 321 (361)
T ss_dssp HHHTTCE-ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEE
T ss_pred ccccccc-cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEE
Confidence 000 011112789999888877643 3489999999999999999887 89999999 5668888
Q ss_pred EeCCCcEEEcC
Q 007768 580 CGWDGLIKYWD 590 (590)
Q Consensus 580 ~g~Dg~I~iWD 590 (590)
++. +.|.+||
T Consensus 322 ~n~-~~v~v~D 331 (361)
T 2oiz_A 322 LDG-GNVNVYD 331 (361)
T ss_dssp ECS-SCEEEEE
T ss_pred eCC-CeEEEEE
Confidence 876 9999997
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=3e-15 Score=153.09 Aligned_cols=240 Identities=11% Similarity=0.152 Sum_probs=177.3
Q ss_pred CCCeEEEEEccCCCEEEEEecC------------------------CeEEEEECCCCcEEEEecCCC--cceEEEEecCC
Q 007768 343 SKAVRDISFCNDGTKFLTASYD------------------------KNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDD 396 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~D------------------------g~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~ 396 (590)
-..+.+|+++++|+++++.+.+ +.|.+||..+++.+..+.... .+..+++.+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999988888777 479999999999887765443 45566666543
Q ss_pred CCCcEEEEEECCCeEEEEeCCCCc-eEEEE---------cCcCCceeEEEEeC-CCCEEEEEe-CCCcEEEEECCCCcEE
Q 007768 397 DKQNILLAGMSDKKIVQWDMNTKE-ITQEY---------DQHLGAVNTITFVD-SNRRFVTSS-DDKSLRVWEFGIPVVI 464 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~iwD~~t~~-~~~~~---------~~h~~~V~~i~~~p-~~~~l~s~s-~Dg~I~iwdl~~~~~~ 464 (590)
+++++...++.|++||..... .+..+ ..+......|+++| ++..+++.+ .++.|++|+. .+..+
T Consensus 103 ---~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~ 178 (329)
T 3fvz_A 103 ---NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFV 178 (329)
T ss_dssp ---CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEE
T ss_pred ---CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEE
Confidence 578888889999999986542 45555 34555789999999 788888886 6899999994 45555
Q ss_pred EEeecC---------CCCceeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-----
Q 007768 465 KYISEP---------HMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP----- 529 (590)
Q Consensus 465 ~~~~~~---------~~~~i~~i~~sp~-g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp----- 529 (590)
..+... .......++++|+ +.++++...++.|++|+..++..+..+. .......+..++|+|
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~---~~~~~~~~~~~~~~pg~~~~ 255 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK---HASFGRNVFAISYIPGFLFA 255 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC---CTTTTTCEEEEEEETTEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe---ccccCCCcceeeecCCEEEE
Confidence 555321 2234789999998 6677777778999999998555443322 111234566788999
Q ss_pred -CCCEEEEEcCCCcEEEEeCCCCeEEEEEe---cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 530 -DGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 -dg~~l~sgs~dg~I~iwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+|+..++...+..|++||..+++.+..+. .+...+.+++++| ++.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEe
Confidence 33333333445689999999999999884 5667789999999 557888888999999985
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=7.2e-15 Score=150.24 Aligned_cols=243 Identities=13% Similarity=0.191 Sum_probs=178.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCC------------------------CcEEEEecCCCCeeEEEec-cCCCCeEEEEEcc
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMD------------------------TKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCN 353 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~D------------------------g~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fsp 353 (590)
-+.|.+|+++|+ |+++++.+.+ +.|.+||. .+++.+..+. ++-.....|++++
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDP-NNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECT-TTCCEEEEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEEC-CCCeEEeccCCCccCCceEEEECC
Confidence 356999999999 8998888877 47999998 5677766654 4556789999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCc-EEEEecC----------CCcceEEEEecCCCCCcEEEEEE-CCCeEEEEeCCCCce
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQ-VIRTFST----------GKIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEI 421 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~t~~~ 421 (590)
+|+++++...++.|++||..... .+..+.. -..+..+++.+. .+.++++.+ .++.|++|| .++..
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~--~g~lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS--TGAVFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT--TCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC--CCeEEEEeCCCCCeEEEEc-CCCCE
Confidence 99988888889999999986542 4444421 123556666662 236777776 699999999 56777
Q ss_pred EEEEcC----------cCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCceeEEEEcCCCCEEEE
Q 007768 422 TQEYDQ----------HLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 422 ~~~~~~----------h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~la~ 489 (590)
+..+.. +......|+++|+ +.++++...++.|++|+..++..+..+.. .+...+..++++| +..+++
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 776642 3344899999998 77777778889999999987877777643 3445688899999 433333
Q ss_pred E-------EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 490 Q-------SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 490 ~-------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
. ..+..|++|+..++..+..+....++ ......++++|+|.++++...++.|++|++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH--FDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC--CSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc--cCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 2 33458999998887655443222223 3456789999999888888899999999974
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=2.3e-15 Score=153.49 Aligned_cols=269 Identities=13% Similarity=0.174 Sum_probs=188.3
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
..|.++.|+++ +..+++.+.++.+++|. ......+..+...+.+++|+++|++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCC-ccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 34778888888 66677778888999993 34566677777888999999999988888889999999999888765
Q ss_pred Ee-cCCCcceEEEEecCCCCCcEEEEEECC----CeEEEEeCCCCceEEEEc--CcCCceeEEEEeCCCCEEEEEeC---
Q 007768 380 TF-STGKIPYVVKLNPDDDKQNILLAGMSD----KKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSD--- 449 (590)
Q Consensus 380 ~~-~~~~~~~~~~~~~~~~~~~~lvsg~~d----g~I~iwD~~t~~~~~~~~--~h~~~V~~i~~~p~~~~l~s~s~--- 449 (590)
.. .....+..+.+.+++ .++++...+ +.|.+||..++.....+. .+...+.++.++|+++++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg---~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp EEECSSSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred EeeCCCCCcceEEECCCC---cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 44 234455666666543 566666555 689999998887654443 24457899999999988777654
Q ss_pred ---CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEE-EcCCeEEEEEcCC-ceeeccc-----ccccCcccc
Q 007768 450 ---DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRE-RFQLNKK-----KRFAGHIVA 519 (590)
Q Consensus 450 ---Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~-s~dg~I~iwd~~~-~~~~~~~-----~~~~~~~~~ 519 (590)
.+.|..|+........... ....+..++|+|++++|+++ +.++.|.+|++.. +..+... ..+.++
T Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--- 232 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--- 232 (333)
T ss_dssp TBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS---
T ss_pred cCCCceEEEEeCCCCEEEEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC---
Confidence 2456666655444332221 23357889999999866555 4578999999853 2211110 111111
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCC------cEEEEEEcCCCCCEEEEEeCC
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG------VCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~------~V~~v~~sp~~~~~l~s~g~D 583 (590)
..+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+|+ +..|+.++.+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d-g~~L~v~~~~ 300 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG-TNQLIICSND 300 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT-SCEEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC-CCEEEEEeCc
Confidence 34567999999998888878899999998 5777777765543 5889999984 4455544444
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=3.5e-14 Score=145.14 Aligned_cols=253 Identities=11% Similarity=0.048 Sum_probs=185.6
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
....+.+.. +.++++...++.|.+||. .+++.+.++. .......++++++++.+++...++.|.+||+.+++....
T Consensus 45 ~~~~i~~~~--~~lyv~~~~~~~v~viD~-~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 45 VAQSMVIRD--GIGWIVVNNSHVIFAIDI-NTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp CEEEEEEET--TEEEEEEGGGTEEEEEET-TTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred cceEEEEEC--CEEEEEEcCCCEEEEEEC-cccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 456777742 566677777899999999 6788878774 456789999999985444444899999999999999888
Q ss_pred ecCCC------cceEEEEecCCCCCcEEEEEE-CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC---
Q 007768 381 FSTGK------IPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD--- 450 (590)
Q Consensus 381 ~~~~~------~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D--- 450 (590)
+..+. .+..+.+ . ...++++.. .++.|.+||+.+++.+..+... .....+.+++++++++++..+
T Consensus 121 i~~g~~~~~~~~p~~i~~--~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--Y--GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--E--TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTT
T ss_pred EEcCCccccCCCcceEEE--E--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccC
Confidence 87666 5666666 2 224555544 4899999999999988877543 345789999999877776654
Q ss_pred -------CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceE
Q 007768 451 -------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 451 -------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
+.|.++|..+.+....+..+.......++++|++++|+++.. .|.+||..++.... ....... .....
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~~--~~~p~ 270 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-RPFLEFR--DTKYY 270 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-SCSBCCC--SSCEE
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-eeeecCC--CCceE
Confidence 789999999888777765443456889999999999888755 89999997755321 1111111 24566
Q ss_pred EEEEcC-CCCEEEEE----cCCCcEEEEeCCCCeEEEEEecCCCcEEEEEE
Q 007768 524 QVNFSP-DGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 524 ~v~~sp-dg~~l~sg----s~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
.++++| ++.+.++. ..++.|.+||.. ++.+.++..... ...++|
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 799999 55555665 578999999998 999988875433 355555
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=2.7e-14 Score=146.18 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=170.3
Q ss_pred CCeeEEEEcCCCCCEEEEEe---------CCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC---C--
Q 007768 300 KGVSAIRFFPKYGHLILSAG---------MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---K-- 365 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs---------~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g-- 365 (590)
..+..+++ + |+.|+... .++.|.+|++ ..++. +.+ ..+..++|+|||++|+.++.+ +
T Consensus 15 ~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~-~~~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENL-KNNAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEET-TTCCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeC-CCCce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 34667777 5 66665532 2567999998 44443 333 568899999999999987754 2
Q ss_pred eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEEC---------------------------CCeEEEEeCCC
Q 007768 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS---------------------------DKKIVQWDMNT 418 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~---------------------------dg~I~iwD~~t 418 (590)
.|.+|++.+++......... ...+.|+|++ ..|+.++. ...|++||+.+
T Consensus 86 ~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg---~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAKN-IRSLEWNEDS---RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EEEEEETTTTEEEEEEEESE-EEEEEECTTS---SEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred eEEEEECCCCceEEEEcCCC-ccceeECCCC---CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 48888999888766655444 5566676654 34444442 25799999999
Q ss_pred CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC-------cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE
Q 007768 419 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg-------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s 491 (590)
++.+..+.. . .+..+.|+|++ ++++++.++ ...||.+..+ ....+.. + ..+.. ++|+|++|+.++
T Consensus 162 ~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~-~-~~~~~--~spdg~~l~~~~ 233 (347)
T 2gop_A 162 EEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKMFE-K-VSFYA--VDSDGERILLYG 233 (347)
T ss_dssp TEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEEEE-E-ESEEE--EEECSSCEEEEE
T ss_pred CeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEEecc-C-cceee--ECCCCCEEEEEE
Confidence 877444444 3 78999999999 777776542 3445544433 3344433 2 34444 399999988877
Q ss_pred cC--------CeEEEEEcCCceeecccccccCcccccceEE-EEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCC
Q 007768 492 LD--------NQILIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 492 ~d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~-v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~ 562 (590)
.+ ..|.+|| ++... ....++ ...+.. +.|+ +| ++++++.++.++|| +.+++... +..+.+
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~~~~---~l~~~~--~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~ 302 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GKEVM---GILDEV--DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRH 302 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SSCEE---ESSTTC--CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSS
T ss_pred ccccCCccccceEEEEC--CCceE---eccccC--CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCC
Confidence 54 3678887 33221 112222 234554 8899 88 88999999999999 87666544 444677
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCcE-EEc
Q 007768 563 VCIGCEWHPLEQSKVATCGWDGLI-KYW 589 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~Dg~I-~iW 589 (590)
.|.+++|+| .++++++.++.. .||
T Consensus 303 ~v~~~~~s~---~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 303 WIMGFDVDE---IVVYLKETATRLRELF 327 (347)
T ss_dssp EEEEEEESS---SEEEEEECSSSCCEEE
T ss_pred eEEeeeeeC---cEEEEEcCCCChHHhe
Confidence 899999998 577787777654 555
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=6.2e-13 Score=132.40 Aligned_cols=274 Identities=12% Similarity=0.101 Sum_probs=189.7
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEE-eccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 007768 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 295 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
+..+...+.+|++.++ +.++++...++.|.+||.. +..... +..+...+.+++++++|.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDK-GKVWITQHKANMISCINLD--GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC--CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 3456678999999999 8877776668899999983 433322 23355789999999999988877778899999986
Q ss_pred CCcEEEEec---CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 374 TGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 374 t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~-~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
++. ..+. ....+..+.+.++ +.++++...++.|.+||. +++.... ...+...+.++++.++++.+++...
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPN---GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred -CcE-EEEeCCCcCCCceeeEECCC---CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 443 2232 2334455555543 356666667889999999 5554432 2334567899999999988887777
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
++.|.+||. .+.............+..+++++++.++++...++.|.+|+. ++.... . .... ....+..+++++
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~--~~~~~~~i~~~~ 234 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-F-KIPT--PNARPHAITAGA 234 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-E-ECSS--TTCCEEEEEECS
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-E-ECCC--CCCCceeEEECC
Confidence 889999998 555443322234456889999999987777666889999998 443221 1 1111 134577899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEE--ecCCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l--~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
+|+++++...++.|.+||. +++. ..+ ..+...+.++++ + ++.++++.+.++.++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~-~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-D-GETIWFAMECDKIGK 290 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-C-SSCEEEEETTTEEEE
T ss_pred CCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-c-CCCEEEEecCCcEEE
Confidence 9997777767889999998 4543 333 344567899999 7 666666655444443
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=1.1e-14 Score=151.41 Aligned_cols=251 Identities=13% Similarity=0.068 Sum_probs=169.6
Q ss_pred CCCeeEEEeccCCCCeEE-----EEEccCCCEEEEEec-CC--eEEEEECCCCcEEEEecCCCcce-EEEEecCCCCCcE
Q 007768 331 NSGKCMRTYMGHSKAVRD-----ISFCNDGTKFLTASY-DK--NIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNI 401 (590)
Q Consensus 331 ~~~~~~~~~~~h~~~V~~-----l~fspdg~~l~s~s~-Dg--~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 401 (590)
.++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++............ ...|+|++ ..
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg---~~ 94 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD---DA 94 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS---SE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC---CE
Confidence 567777888887766666 889999999998887 66 48889999998876655443332 45677765 56
Q ss_pred EEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEE--eCCCCEEEEE----------------------eCCCcEEEEE
Q 007768 402 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF--VDSNRRFVTS----------------------SDDKSLRVWE 457 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~--~p~~~~l~s~----------------------s~Dg~I~iwd 457 (590)
|+.++.++.|++||+.+++....+..+...+....| ++++.+++.. ..+..|++||
T Consensus 95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 888888899999999999877777666666654444 7899888743 2346799999
Q ss_pred CCCCcEEEEeecCCCCceeEEEEcC-CCCEEEEEEcC------CeEEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007768 458 FGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp-~g~~la~~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
+.++...... .+...+..+.|+| +|+.|+.++.+ ..|.++++...... .+..+.....+..+.||||
T Consensus 175 ~~~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 175 LKTGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp TTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEEECTT
T ss_pred CCCCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccceECCC
Confidence 9887654443 2445688999999 99999887764 37888887654322 1222211134667899999
Q ss_pred CCEEEEEcC-CC----cEEEEeCCCCeEEE--EEecCCCc---EEEEEEcCCCCCEEEEE--------eCCCcEEEcC
Q 007768 531 GRFVMSGDG-EG----KCWFWDWKSCKVFR--TLKCHEGV---CIGCEWHPLEQSKVATC--------GWDGLIKYWD 590 (590)
Q Consensus 531 g~~l~sgs~-dg----~I~iwd~~t~~~~~--~l~~h~~~---V~~v~~sp~~~~~l~s~--------g~Dg~I~iWD 590 (590)
|+.|+..+. ++ .|++||+.+++... .+..+... ...++|+|++..++++. +.+..|++||
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 997765432 22 39999999987533 33321100 11236899544444332 4466788886
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=9.7e-13 Score=144.07 Aligned_cols=296 Identities=16% Similarity=0.140 Sum_probs=199.0
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecC-CCCeeEEEeccCCCCeEEEEEc----cCCCEEEEEe
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV-NSGKCMRTYMGHSKAVRDISFC----NDGTKFLTAS 362 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fs----pdg~~l~s~s 362 (590)
..+++.++... ..+.++.|+|+ +++|++++.|+.|.+||+. .+.+.+..+... .....++|+ |+|+++++++
T Consensus 186 t~~v~~~i~~g-~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n 262 (567)
T 1qks_A 186 TYEIKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGA 262 (567)
T ss_dssp TCCEEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEE
T ss_pred CCeEEEEEeCC-CCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEE
Confidence 34566666543 35679999999 8999999999999999993 356677776643 346899999 6999888876
Q ss_pred c-CCeEEEEECCCCcEEEEecCCC----------cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE--EEEcCcC
Q 007768 363 Y-DKNIKYWDTETGQVIRTFSTGK----------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT--QEYDQHL 429 (590)
Q Consensus 363 ~-Dg~I~vWd~~t~~~~~~~~~~~----------~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~--~~~~~h~ 429 (590)
+ ++.|.|+|..+.+.+..+.... .+.+..+........+++.....|.|.++|....... ..+ ...
T Consensus 263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~ 341 (567)
T 1qks_A 263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAE 341 (567)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECC
T ss_pred ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-ecc
Confidence 6 5999999999999998876532 1122223323333456666677899999999876422 222 233
Q ss_pred CceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEeec----CCCCceeEEEEcCCCCEEEEEE--cCCeEEEEEcC
Q 007768 430 GAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAAQS--LDNQILIYSTR 502 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~~~~~~~~----~~~~~i~~i~~sp~g~~la~~s--~dg~I~iwd~~ 502 (590)
....++.|+|++++|++++ .++.|.++|+.+.+.+..+.. +|...... -++|++..+++.+ .++.|.++|..
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCC
Confidence 4567889999999987765 578999999999987776654 23221222 2588755554433 45899999987
Q ss_pred Ccee----ecccccccCcccccceEEEEEcCCCCEEEEEcC-------CCcEEEEeCCCC-----e-EEEEEec------
Q 007768 503 ERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-------EGKCWFWDWKSC-----K-VFRTLKC------ 559 (590)
Q Consensus 503 ~~~~----~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-------dg~I~iwd~~t~-----~-~~~~l~~------ 559 (590)
.... ......+... ...-..+.++|++++|++... ...|.++|+.+. . .+..+..
T Consensus 421 ~~~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp TTTCTTTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CCCCccccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 6211 1111222221 111123778999999998763 358999999876 2 2234431
Q ss_pred --CCCcEEEEEEcCCCCCEEEEEe----CCCcEEEcC
Q 007768 560 --HEGVCIGCEWHPLEQSKVATCG----WDGLIKYWD 590 (590)
Q Consensus 560 --h~~~V~~v~~sp~~~~~l~s~g----~Dg~I~iWD 590 (590)
....+..+.|+|++..+++|.. .++.|.|+|
T Consensus 499 ~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 499 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 2357899999996555555543 378888876
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.3e-14 Score=162.39 Aligned_cols=257 Identities=9% Similarity=-0.026 Sum_probs=162.4
Q ss_pred EEEecCCCCCee---------EEEEc--CCCCCE-EEEEe-CCCcEEEEecCCCC-eeEEEecc-----CCCCeEEEEEc
Q 007768 292 VHTWSGHTKGVS---------AIRFF--PKYGHL-ILSAG-MDTKVKIWDVVNSG-KCMRTYMG-----HSKAVRDISFC 352 (590)
Q Consensus 292 i~~l~gH~~~V~---------~l~~s--p~~g~~-L~sgs-~Dg~I~iWd~~~~~-~~~~~~~~-----h~~~V~~l~fs 352 (590)
.+.+..|...|. ...|+ |+ ++. |+.++ .+..|.+|++...+ .....+.. |...+.+++|+
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC
Confidence 345556666655 66666 88 555 55444 35666666662002 34455555 67789999999
Q ss_pred cCCCEEEEEecC----------CeEEEEECCC------CcEEEEe-cCCCcceEEEEecCCCCCcEEEEEECC-------
Q 007768 353 NDGTKFLTASYD----------KNIKYWDTET------GQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSD------- 408 (590)
Q Consensus 353 pdg~~l~s~s~D----------g~I~vWd~~t------~~~~~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~d------- 408 (590)
|||+.|++++.+ ..|.+||+.+ +...... ..........|+|++ ..|+.++.+
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG---~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG---RQAVWLAWDHPRMPWE 215 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTS---SEEEEEEECTTCCTTT
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCC---CEEEEEECCCCCCCCC
Confidence 999999999877 5899999998 6654433 333333445677654 456555543
Q ss_pred -CeEEEEeCC-CC---ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC--cEEEEECCCCcEEEEeecCCCCc-------
Q 007768 409 -KKIVQWDMN-TK---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDK--SLRVWEFGIPVVIKYISEPHMHS------- 474 (590)
Q Consensus 409 -g~I~iwD~~-t~---~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg--~I~iwdl~~~~~~~~~~~~~~~~------- 474 (590)
..|++||+. ++ +.......|...+..+.|+|+|+++++++.++ .|.+||+..+... .+...+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~ 294 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTP 294 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCST
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccc
Confidence 479999999 57 44444455678899999999999888888888 5666666555543 332222211
Q ss_pred -eeEEEEcCCCCEEEEEEcCCeEEEE--EcCCceeecccccccCcccccceEEE-EEcCCCCEEEEEcCCC--cEEEEeC
Q 007768 475 -MPSISLHPNTNWLAAQSLDNQILIY--STRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVMSGDGEG--KCWFWDW 548 (590)
Q Consensus 475 -i~~i~~sp~g~~la~~s~dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~v~~v-~~spdg~~l~sgs~dg--~I~iwd~ 548 (590)
+..++|+|++.++++++. +.++|| |+.++. + ..+..+ ...+..+ +++.+.-++++++.+. .|++||+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~---~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 295 GMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L---VDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp TCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E---EECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred cCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E---EEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 567899999999999988 998998 544433 2 223333 2334444 4433332334444443 5777787
Q ss_pred CCCeEEEEEecC
Q 007768 549 KSCKVFRTLKCH 560 (590)
Q Consensus 549 ~t~~~~~~l~~h 560 (590)
.+++.......|
T Consensus 368 ~~g~~~~l~~~~ 379 (662)
T 3azo_A 368 VTGRARTIGARH 379 (662)
T ss_dssp TTCCEEEEESCC
T ss_pred CCCceEEeecCC
Confidence 777655443333
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=9.6e-14 Score=141.89 Aligned_cols=255 Identities=10% Similarity=0.082 Sum_probs=183.9
Q ss_pred CCcEEEEecCCCCeeEEEec------cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEec
Q 007768 321 DTKVKIWDVVNSGKCMRTYM------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNP 394 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~------~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~ 394 (590)
++.|.+||. .+++....+. .......++.+. +++.+++...++.|.+||..+++.+..+.....+..+.+.+
T Consensus 16 ~~~l~~~d~-~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDP-ATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEET-TTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred CceEEEEEC-CCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence 789999998 5666554431 122446778874 44555566667999999999999999887777777888766
Q ss_pred CCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC-----CceeEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEe
Q 007768 395 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-----GAVNTITFVDSNRRFVTSS--DDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~-----~~V~~i~~~p~~~~l~s~s--~Dg~I~iwdl~~~~~~~~~ 467 (590)
++ .++++...++.|.+||+.+++....+.... .....|++ . +..++++. .++.|.+||+.+...+..+
T Consensus 94 ~g---~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 94 DE---KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp TT---EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred CC---eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 53 445554489999999999998887765332 14567777 3 44555544 4889999999998888777
Q ss_pred ecCCCCceeEEEEcCCCCEEEEEEcC----------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE
Q 007768 468 SEPHMHSMPSISLHPNTNWLAAQSLD----------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 537 (590)
Q Consensus 468 ~~~~~~~i~~i~~sp~g~~la~~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 537 (590)
.. ......++++|+|++++++..+ +.|.+||..+.........-.+ .....++|+|++++|+++
T Consensus 169 ~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g----~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 169 TI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG----DWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp EC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT----CCCEEEEECTTSCEEEEE
T ss_pred Ec--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC----CCceeEEEecCCCEEEEE
Confidence 54 3345788999999877776554 7899999987654433221111 245679999999999888
Q ss_pred cCCCcEEEEeCCCCeEEEE--EecCCCcEEEEEEcCCCCCEEEEE----eCCCcEEEcC
Q 007768 538 DGEGKCWFWDWKSCKVFRT--LKCHEGVCIGCEWHPLEQSKVATC----GWDGLIKYWD 590 (590)
Q Consensus 538 s~dg~I~iwd~~t~~~~~~--l~~h~~~V~~v~~sp~~~~~l~s~----g~Dg~I~iWD 590 (590)
.. .|.+||..+++.... +..+.....+++++|+++.++++. ..++.|.+||
T Consensus 243 ~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp SS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred cc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 65 899999998876421 122235689999999777777777 6788999987
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=6.2e-13 Score=145.58 Aligned_cols=272 Identities=11% Similarity=0.088 Sum_probs=195.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC--CCcEEEEecCCCcceE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTGKIPYV 389 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~--t~~~~~~~~~~~~~~~ 389 (590)
+.++++...++.|.++|. .+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+..+..+..
T Consensus 167 ~~~~V~~~~~~~V~viD~-~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDG-STYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 244 (567)
T ss_dssp GEEEEEETTTTEEEEEET-TTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred ceEEEEeCCCCeEEEEEC-CCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence 456777788999999999 67778877753 3457799999999999999999999999996 8899999988888888
Q ss_pred EEEe----cCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCc-----------CCceeEEEEeCCCCEEE-EEeCCCcE
Q 007768 390 VKLN----PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-----------LGAVNTITFVDSNRRFV-TSSDDKSL 453 (590)
Q Consensus 390 ~~~~----~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h-----------~~~V~~i~~~p~~~~l~-s~s~Dg~I 453 (590)
+.++ |++ ..++++...++.|.++|..+.+.+..+... ...+..+..++++..++ ....+|.|
T Consensus 245 ia~s~~~~pDG--k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 245 IETSKMEGWED--KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEECCSTTCTT--TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred eEEccccCCCC--CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 8887 343 255666667799999999999988876421 12577888888766544 45567999
Q ss_pred EEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeccccc-ccCcccccceEEEEEcCCC
Q 007768 454 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~v~~spdg 531 (590)
.++|+.....+.............+.|+|++++|+++. .++.|.++|+.++........ -.... .+....+ ++|++
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph-pg~g~~~-~~p~~ 400 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH-PGRGANF-VHPTF 400 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC-CTTCEEE-EETTT
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC-Cccceee-ECCCC
Confidence 99999776433332223444567889999999987776 568999999998765544332 11111 1111112 68875
Q ss_pred CEE-EEEc-CCCcEEEEeCCC-------CeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC-------CCcEEEcC
Q 007768 532 RFV-MSGD-GEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-------DGLIKYWD 590 (590)
Q Consensus 532 ~~l-~sgs-~dg~I~iwd~~t-------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~-------Dg~I~iWD 590 (590)
..+ +++. .++.|.++|..+ .+.+.++......-..+..+| ++.+|..... .++|.++|
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEE
Confidence 544 4543 568999999988 778888886544334577899 5556665442 34777765
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=2e-13 Score=136.90 Aligned_cols=241 Identities=9% Similarity=0.028 Sum_probs=168.1
Q ss_pred CeeEEEeccCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCcEEEEecC-CCcceEEEEecCCCCCcEEEEEECCCe
Q 007768 333 GKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
+..+..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+.. ...+..+.+.+++ .++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg---~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG---HLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC---CEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC---cEEEEecCCCe
Confidence 344555666677789999999998 7778888999999999988 444433 3445566666643 46666666789
Q ss_pred EEEEeCCCCceEEEEcCc----CCceeEEEEeCCCCEEEEEeC-----------------CCcEEEEECCCCcEEEEeec
Q 007768 411 IVQWDMNTKEITQEYDQH----LGAVNTITFVDSNRRFVTSSD-----------------DKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~h----~~~V~~i~~~p~~~~l~s~s~-----------------Dg~I~iwdl~~~~~~~~~~~ 469 (590)
|.+||..+++........ ...++.++++|+|+++++.+. .+.|..++.. +. +..+.
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~- 168 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI- 168 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE-
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee-
Confidence 999999888765443221 235678999999998887321 2355555544 33 33332
Q ss_pred CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC-CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 470 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
........++|+|+++.|++.+.++.|.+|++. ++........+.. ....+..++++++|+++++. ++.|.+||.
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV--EPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC--SSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC--CCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 345567899999999999777778999999986 3222011111211 13345569999999977666 788999997
Q ss_pred CCCeEEEEEecCCCcEEEEEEc-CCCCCEEEEEeCCCcEEE
Q 007768 549 KSCKVFRTLKCHEGVCIGCEWH-PLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 549 ~t~~~~~~l~~h~~~V~~v~~s-p~~~~~l~s~g~Dg~I~i 588 (590)
. ++.+..+..+.. +.+++|. | ++..|+.++.++.+++
T Consensus 245 ~-g~~~~~~~~~~~-~~~~~f~~~-d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 245 D-GDELGRVLTPQT-TSNLCFGGP-EGRTLYMTVSTEFWSI 282 (296)
T ss_dssp T-SCEEEEEECSSC-CCEEEEEST-TSCEEEEEETTEEEEE
T ss_pred C-CCEEEEEECCCC-ceeEEEECC-CCCEEEEEcCCeEEEE
Confidence 6 888888888877 8999995 6 6677888887776554
No 183
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.62 E-value=9e-14 Score=158.03 Aligned_cols=279 Identities=11% Similarity=0.066 Sum_probs=175.2
Q ss_pred ceEEEecCCCCC-----eeEEEEcCCCCCEEEEEeCC---------CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCC
Q 007768 290 RLVHTWSGHTKG-----VSAIRFFPKYGHLILSAGMD---------TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG 355 (590)
Q Consensus 290 ~~i~~l~gH~~~-----V~~l~~sp~~g~~L~sgs~D---------g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg 355 (590)
++...+.+|... ...+.|||+ |++|+.++.+ +.+.+||+ .++++ ..+..|...+...+|||||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~~~~~~~~~~d~-~~~~~-~~l~~~~~~~~~~~~SPdG 123 (740)
T 4a5s_A 47 NSSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDL-NKRQL-ITEERIPNNTQWVTWSPVG 123 (740)
T ss_dssp CEEEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEET-TTTEE-CCSSCCCTTEEEEEECSST
T ss_pred ceEEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeEEEccceEEEEEEC-CCCcE-EEcccCCCcceeeEECCCC
Confidence 445566777643 244889999 8888888876 56779999 45554 3467788899999999999
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEecCCCcc-------------------eEEEEecCCCCCcEEEEEECC-C------
Q 007768 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-------------------YVVKLNPDDDKQNILLAGMSD-K------ 409 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~lvsg~~d-g------ 409 (590)
+.|+.+. ++.|.+|++.++...+....+... ..+.|+|++ ..|+.++.| +
T Consensus 124 ~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg---~~la~~~~d~~~v~~~~ 199 (740)
T 4a5s_A 124 HKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG---TFLAYAQFNDTEVPLIE 199 (740)
T ss_dssp TCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS---SEEEEEEEECTTCCEEE
T ss_pred CEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC---CEEEEEEEcccCCceEE
Confidence 9999885 689999999988866543322221 126677765 345544321 1
Q ss_pred -----------------------------eEEEEeCCC---Cc--eEEEEc------CcCCceeEEEEeCCCCEEEEEeC
Q 007768 410 -----------------------------KIVQWDMNT---KE--ITQEYD------QHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 410 -----------------------------~I~iwD~~t---~~--~~~~~~------~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
.|++||+.+ ++ ....+. .|...+..++|+|+++.++....
T Consensus 200 ~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~ 279 (740)
T 4a5s_A 200 YSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR 279 (740)
T ss_dssp EEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred EEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence 588899998 73 233343 27778999999999987665533
Q ss_pred ----CCcEEEEECCCCc----EE---EEeecCCCCcee-----EEEEcCCCCEEE-EEEc-C--CeEEEEEcCCceeecc
Q 007768 450 ----DKSLRVWEFGIPV----VI---KYISEPHMHSMP-----SISLHPNTNWLA-AQSL-D--NQILIYSTRERFQLNK 509 (590)
Q Consensus 450 ----Dg~I~iwdl~~~~----~~---~~~~~~~~~~i~-----~i~~sp~g~~la-~~s~-d--g~I~iwd~~~~~~~~~ 509 (590)
+..|++||+.++. +. ..+...+...+. .+.|+|+|+.|+ ..+. + ..|++|++.++....
T Consensus 280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~- 358 (740)
T 4a5s_A 280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF- 358 (740)
T ss_dssp SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-
T ss_pred CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-
Confidence 3479999998765 11 111123443333 788999999877 6653 3 458888887653321
Q ss_pred cccccCcccccceEEEEEcCCCCEEE-EEcC----CC--cEEEEeCCCCeEEEEEec----CCCcEEEEEEcCCCCCEEE
Q 007768 510 KKRFAGHIVAGYACQVNFSPDGRFVM-SGDG----EG--KCWFWDWKSCKVFRTLKC----HEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~-sgs~----dg--~I~iwd~~t~~~~~~l~~----h~~~V~~v~~sp~~~~~l~ 578 (590)
+. .+. ..+..+. ++|++.|+ +++. .+ .|+..++..+.....+.. ....+..+.|+|++..+++
T Consensus 359 lT--~g~---~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~ 432 (740)
T 4a5s_A 359 IT--KGT---WEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (740)
T ss_dssp SC--CSS---SCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred cc--cCC---EEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence 11 121 2233332 24466554 4443 23 455556655544333432 2356789999995444444
Q ss_pred EEeC
Q 007768 579 TCGW 582 (590)
Q Consensus 579 s~g~ 582 (590)
+++.
T Consensus 433 ~~s~ 436 (740)
T 4a5s_A 433 RCSG 436 (740)
T ss_dssp EECS
T ss_pred EeCC
Confidence 4443
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=3.5e-13 Score=135.07 Aligned_cols=245 Identities=11% Similarity=0.123 Sum_probs=174.9
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
..+..+..+.....+++|+|+ ++ +++++..++.|.+|+. ..+ ...+..+...+.+++|+++|+++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSD-DGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEET-TSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEEC-CCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 344566677778899999999 66 8888889999999998 344 667777888899999999999887777778999
Q ss_pred EEECCCCcEEEEecC-----CCcceEEEEecCCCCCcEEEE----EE-------------CCCeEEEEeCCCCceEEEEc
Q 007768 369 YWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLA----GM-------------SDKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 369 vWd~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lvs----g~-------------~dg~I~iwD~~t~~~~~~~~ 426 (590)
+||..+++....... ...+..+.+.+++ .++++ |. ..+.|+.++.. ++. ..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G---~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDG---SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI 168 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTS---CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC---CEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee
Confidence 999988876544321 1223346666543 56665 32 13577777776 543 3444
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC-CCcE---EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG-IPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~-~~~~---~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
.+....+.++|+|+++.|++.+.++.|++|++. .+.. ...+ ......+.+++++++|+++++. ++.|.+|+..
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 566778999999999999777788999999986 3333 2333 3345567789999999866665 8899999986
Q ss_pred CceeecccccccCcccccceEEEEE-cCCCCEEEEEcCCCcEEEEeCCCCeEE
Q 007768 503 ERFQLNKKKRFAGHIVAGYACQVNF-SPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
. ..+. .+..+ .. +.+++| +|+++.|++++.+ .|.-++..+.++.
T Consensus 246 g-~~~~---~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 246 G-DELG---RVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp S-CEEE---EEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred C-CEEE---EEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 3 3332 22222 22 567889 6899999888875 5666677666543
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=1.9e-13 Score=154.51 Aligned_cols=243 Identities=10% Similarity=0.048 Sum_probs=167.6
Q ss_pred CCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCe------
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDK-----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK------ 410 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg-----~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~------ 410 (590)
|...+..++|||||++|+.++.++ .|++||+.+++.+...........+.|++++ ..|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg---~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG---KGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS---SEEEEEECCCCSSCCSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC---CEEEEEEECCccccccc
Confidence 445688999999999998776543 8999999999887643322224457787765 45666666554
Q ss_pred ----------EEEEeCCCCce--EEEEc--CcCCceeEEEEeCCCCEEEEEeC-----CCcEEEEECCC------Cc-EE
Q 007768 411 ----------IVQWDMNTKEI--TQEYD--QHLGAVNTITFVDSNRRFVTSSD-----DKSLRVWEFGI------PV-VI 464 (590)
Q Consensus 411 ----------I~iwD~~t~~~--~~~~~--~h~~~V~~i~~~p~~~~l~s~s~-----Dg~I~iwdl~~------~~-~~ 464 (590)
|++|++.++.. ...+. .|...+..+.|+|+|++|+.++. +..|++||+.. +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988752 22233 34566889999999999888764 56899999976 42 23
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
..+.. +...+.. .|+|+|..|+..+.. +.|.+|++.+.... ....+..+.....+..++|++++.++++...+
T Consensus 280 ~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 280 VKLID-NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEEEC-SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EEeeC-CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 44433 3333433 588899988877654 35999998765311 11222233222356678899888888888888
Q ss_pred Cc--EEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC---CCcEEEcC
Q 007768 541 GK--CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 590 (590)
Q Consensus 541 g~--I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~---Dg~I~iWD 590 (590)
+. |++|++.+++.+..+..+.+.|.++.++|++..++++.+. .+.|.+||
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 74 6777887888888888888889999999954444444443 46677775
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=4.3e-12 Score=129.05 Aligned_cols=243 Identities=13% Similarity=0.122 Sum_probs=165.3
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC----C
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----K 365 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D----g 365 (590)
..+..+.++...+.+++|+|+ +++++++..++.|.+||. ..++.......+...+.+++|+++|+++++...+ +
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINP-ETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECT-TTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred ceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeC-CCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 455667788888999999998 888888888999999998 4555544444567889999999999888877666 6
Q ss_pred eEEEEECCCCcEEEEec---CCCcceEEEEecCCCCCcEEEEEEC------CCeEEEEeCCCCceEEEEcCcCCceeEEE
Q 007768 366 NIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAVNTIT 436 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~t~~~~~~~~~h~~~V~~i~ 436 (590)
.|.+||..++.....+. ....+..+.+.+++ .++++... .+.|+.||..+++..... .+...+..++
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~ 188 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG---GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIA 188 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS---CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEE
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCC---CEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceE
Confidence 89999998887654332 22334555666543 45555443 367888887766544332 3345678999
Q ss_pred EeCCCCEEE-EEeCCCcEEEEECCC-CcEEEE-----e-ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007768 437 FVDSNRRFV-TSSDDKSLRVWEFGI-PVVIKY-----I-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 437 ~~p~~~~l~-s~s~Dg~I~iwdl~~-~~~~~~-----~-~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
|+|+++.|+ +.+.++.|.+|++.. +..+.. . .......+..++++++|+++++...++.|.+|+... ..+.
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~ 267 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIG 267 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEE
Confidence 999998664 445678999999964 222211 1 111124678899999999888877889999999843 3322
Q ss_pred cccccc---CcccccceEEEEEcCCCCEEEEEcCCC
Q 007768 509 KKKRFA---GHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 509 ~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
...... ++ ...+..++|+|+++.|++++.++
T Consensus 268 ~~~~~~~~~g~--~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 268 QILIPGRDEGH--MLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEECTTGGGTC--SCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEcCCCcccc--ccCcceEEECCCCCEEEEEeCcc
Confidence 221110 11 01466799999988777666553
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=9.9e-13 Score=130.97 Aligned_cols=244 Identities=14% Similarity=0.108 Sum_probs=182.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCC-CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCC--cce
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPY 388 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~--~~~ 388 (590)
+++|++++.++.|.+||. .+++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..+. ...
T Consensus 5 ~~~lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CEEEEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CcEEEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 589999999999999998 6899999998776 5789999999999888 45788999999 899999998753 333
Q ss_pred EEEEecCCCCCcEEEEEEC-CCeEEEEeCCCCceEEEEc------CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 007768 389 VVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYD------QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~-dg~I~iwD~~t~~~~~~~~------~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~ 461 (590)
...+.++ ++++++.+. ++.|..+|. +++.+..+. .+......+.+.++++++++.+.++.|.+||.. +
T Consensus 81 ~~~~~~d---G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 81 TARILPD---GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEECTT---SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred ccEECCC---CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 4444443 367777777 788888886 677776664 222345667889999999999999999999998 7
Q ss_pred cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccc--cCcccccceEEEEEcCCCCEEEEEcC
Q 007768 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF--AGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
+.+..+... ..+.++...++++++++++.++.|..+|..++..+...... .+. ....+..+...++|+++++...
T Consensus 156 ~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~-~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 156 QLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV-QLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp CEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC-CCSEEEEEEECTTSCEEEEEEC
T ss_pred CEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc-cccccccceEcCCCCEEEEecc
Confidence 777776542 45667888899999999888889999999877665444321 111 1234677889999999888742
Q ss_pred C--------CcEEEEeC-CCCeEEEEEecCC--CcEEEE
Q 007768 540 E--------GKCWFWDW-KSCKVFRTLKCHE--GVCIGC 567 (590)
Q Consensus 540 d--------g~I~iwd~-~t~~~~~~l~~h~--~~V~~v 567 (590)
. +..+++.+ .+++.+..+..+. +.+.++
T Consensus 233 g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 233 GHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp TTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred CccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 1 23355555 6889988887654 344444
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=3.7e-14 Score=147.39 Aligned_cols=250 Identities=10% Similarity=-0.018 Sum_probs=165.3
Q ss_pred EecCCCCeeEEEeccCCCC-----eEEEEEccCCCEEEEEecC---CeEEEEECCCCcEEEEecCCCcce-EEEEecCCC
Q 007768 327 WDVVNSGKCMRTYMGHSKA-----VRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDD 397 (590)
Q Consensus 327 Wd~~~~~~~~~~~~~h~~~-----V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~ 397 (590)
+|. .++..+..+..+... +.+++|+|+|++|+.+... ..|.+||+.+++............ ...|++++
T Consensus 15 ~d~-~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg- 92 (396)
T 3c5m_A 15 VDS-DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE- 92 (396)
T ss_dssp ECT-TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-
T ss_pred ecC-CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-
Confidence 344 466666666655443 7889999999998877543 478899999887655443332222 25667655
Q ss_pred CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeE-------------------EEEeCCCCEEEEE-----eCCCcE
Q 007768 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT-------------------ITFVDSNRRFVTS-----SDDKSL 453 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~-------------------i~~~p~~~~l~s~-----s~Dg~I 453 (590)
..|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|
T Consensus 93 --~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 93 --RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp --SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred --CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 57888888889999999998776665544443222 3456666665544 356689
Q ss_pred EEEECCCCcEEEEeecCCCCceeEEEEcC-CCCEEEEEEcC------CeEEEEEcCCceeecccccccCcccccceEEEE
Q 007768 454 RVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~la~~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
++||+.++...... .+...+..+.|+| ++..|+..+.+ ..|.+|++....... +..+.....+..++
T Consensus 171 ~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 171 IKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK----IKEHAEGESCTHEF 244 (396)
T ss_dssp EEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE----SSCCCTTEEEEEEE
T ss_pred EEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE----eeccCCCccccceE
Confidence 99999887655444 3456788999999 78877776654 368888886543211 11111123466789
Q ss_pred EcCCCCEEEEEcCC-----CcEEEEeCCCCeEEEEEecCCCcEEEEEEcC-CCCCEEEEEe----------------CCC
Q 007768 527 FSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP-LEQSKVATCG----------------WDG 584 (590)
Q Consensus 527 ~spdg~~l~sgs~d-----g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp-~~~~~l~s~g----------------~Dg 584 (590)
|+|+|++|+.++.+ +.|++||+.+++....... .+ +. +.|+| ++. +|++++ .++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSS-EEEEEECCC----------CCCCCC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCc-eEEEecCCcceeeccccccccCCCC
Confidence 99999987766543 4499999998876543332 22 33 88998 654 676654 246
Q ss_pred cEEEcC
Q 007768 585 LIKYWD 590 (590)
Q Consensus 585 ~I~iWD 590 (590)
.|++||
T Consensus 321 ~i~~~d 326 (396)
T 3c5m_A 321 FLYVLN 326 (396)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 788885
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=5.4e-13 Score=131.28 Aligned_cols=240 Identities=12% Similarity=0.088 Sum_probs=167.9
Q ss_pred CeeEEEEcCCCCCEEE-EEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE
Q 007768 301 GVSAIRFFPKYGHLIL-SAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~-sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
...+|++.++ +++++ +.+.++.|.+|+. ...........+...+.+|+++++|+++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~- 100 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLAT-GSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT- 100 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecC-CCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-
Confidence 6789999998 77777 5477899999987 33322222223445788999999998666655 889999998766543
Q ss_pred EecCC--CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007768 380 TFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 380 ~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
.+... ..+..+.+.+++ .++++...++.|.+|+..+.............+.+|++.++++.+++...++.|.+||
T Consensus 101 ~~~~~~~~~p~~i~~~~~g---~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQG---AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp ECCCCSCSSEEEEEECTTC---CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eeecCCcCCCcceEECCCC---CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 23222 345566666533 5777777789999998766544333333345678999999999877777788999999
Q ss_pred CCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE
Q 007768 458 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 537 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 537 (590)
.......... ......+.+++++++|.++++...++.|.+|+........ ... .. ...+..++++++|+++++.
T Consensus 178 ~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--~~~-~~--~~~p~~i~~~~~g~l~v~~ 251 (270)
T 1rwi_B 178 AESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--LPF-TG--LNTPLAVAVDSDRTVYVAD 251 (270)
T ss_dssp TTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE--CCC-CS--CSCEEEEEECTTCCEEEEE
T ss_pred cCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee--ecc-CC--CCCceeEEECCCCCEEEEE
Confidence 8776544322 2233668899999999777777778899999986543221 111 11 1356789999999988888
Q ss_pred cCCCcEEEEeCCCCeE
Q 007768 538 DGEGKCWFWDWKSCKV 553 (590)
Q Consensus 538 s~dg~I~iwd~~t~~~ 553 (590)
..++.|+++++...+.
T Consensus 252 ~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 252 RGNDRVVKLTSLEHHH 267 (270)
T ss_dssp GGGTEEEEECCCGGGS
T ss_pred CCCCEEEEEcCCCccc
Confidence 8999999999876543
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=2.7e-11 Score=120.54 Aligned_cols=275 Identities=11% Similarity=0.034 Sum_probs=186.9
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEE-EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
.....+.+|++.++ +.++++...++.|.+|+.. ++... .+..+...+.++++.++|+++++...++.|.+||.. +
T Consensus 17 ~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSED-GKVWFTQHKANKISSLDQS--GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTT-SCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCC-CCEEEEcCCCCeEEEECCC--CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34567899999998 8888877778999999983 44333 223344679999999999887777668899999988 6
Q ss_pred cEEEEec--CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007768 376 QVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~-~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+...... ....+..+.+.+. +.++++...++.|..||.. ++.... +......+.++++.++++.+++...++.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLN---GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECST---TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred CeEEecCCCCCCCCccceECCC---CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 5532221 1234455555543 3566666668899999988 655432 3334567899999999997777777888
Q ss_pred EEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
|..|+. ...............+..+++++++.++++....+.|.+|+... .... . ..... ...+..++++++|+
T Consensus 169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~~-~-~~~~~--~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-EISE-Y-DIPTP--NARPHAITAGKNSE 242 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CEEE-E-ECSST--TCCEEEEEECSTTC
T ss_pred EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-cEEE-E-ECCCC--CCCceEEEECCCCC
Confidence 999998 44443322223345688999999998777766677899999832 2211 1 11111 34567899999999
Q ss_pred EEEEEcCCCcEEEEeCCCCeEEEE-EecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 533 FVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
+.++...++.|..||. +++.... +......+.++++.+ ++.++++.. . .|..+
T Consensus 243 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 243 IWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK-DGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT-TSCEEEECS-S-EEEEE
T ss_pred EEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC-CCCEEEEcc-C-ceEEe
Confidence 7777777899999998 4544322 233345678899998 555555544 4 55544
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=2.1e-12 Score=146.05 Aligned_cols=244 Identities=12% Similarity=0.098 Sum_probs=165.0
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCC-----cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCe-----
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMDT-----KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 366 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~Dg-----~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~----- 366 (590)
+|...+..++|+|+ |++|+.++.++ .|++||+ .+++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~-~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKV-DGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEET-TTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEEC-CCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccc
Confidence 45567899999999 78877665543 8999999 567665533322 23778999999999999988766
Q ss_pred -----------EEEEECCCCcE--EEEecCC-Cc--ceEEEEecCCCCCcEEEEEEC-----CCeEEEEeCCC------C
Q 007768 367 -----------IKYWDTETGQV--IRTFSTG-KI--PYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMNT------K 419 (590)
Q Consensus 367 -----------I~vWd~~t~~~--~~~~~~~-~~--~~~~~~~~~~~~~~~lvsg~~-----dg~I~iwD~~t------~ 419 (590)
|++|++.+++. ...+... +. .....+++++ ..|+.++. +..|++||+.+ +
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg---~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG---RYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS---CEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC---CEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 99999998762 2222222 22 3455666654 34444443 57899999986 5
Q ss_pred c-eEEEEcCcCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCCc--EEEEeecCCC-CceeEEEEcCCCCEEEEEE
Q 007768 420 E-ITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPV--VIKYISEPHM-HSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 420 ~-~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg----~I~iwdl~~~~--~~~~~~~~~~-~~i~~i~~sp~g~~la~~s 491 (590)
. ....+..+...+.. .|++++..|+..+..+ .|.+||+..+. ....+..... ..+..++|++++.++++..
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 3 34555566666654 4888888887766533 59999998763 1233333223 3688899998788888888
Q ss_pred cCCe--EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE-c---CCCcEEEEeCCCCe
Q 007768 492 LDNQ--ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-D---GEGKCWFWDWKSCK 552 (590)
Q Consensus 492 ~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s---~dg~I~iwd~~t~~ 552 (590)
.++. |.+|++.++..+.. +..+ .+.+..+.++|++..|+.. + ..+.|++||+.+++
T Consensus 355 ~~g~~~l~~~~~~~g~~~~~---l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLKI---FPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTEEEEEEEETTTCCEEEE---ECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCEEEEEEEECCCCCEEEe---cCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8875 56667645443322 2223 4567788999999766533 2 45789999998877
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=1.4e-12 Score=133.25 Aligned_cols=232 Identities=12% Similarity=0.150 Sum_probs=153.8
Q ss_pred CCeeEEEEcCCCCCEEEEEeCC---Cc--EEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC----------
Q 007768 300 KGVSAIRFFPKYGHLILSAGMD---TK--VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---------- 364 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~D---g~--I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---------- 364 (590)
..+.+++|+|+ |+.|+.++.+ +. |.+|++ ..++....... .. +..++|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpD-g~~la~~~~~~~~~~~~l~~~~~-~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPD-GKKIAFMRANEEKKVSEIWVADL-ETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTT-SSEEEEEEEETTTTEEEEEEEET-TTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCC-CCEEEEEEeccCCCcceEEEEEC-CCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 46889999999 8888777653 33 777787 45555444433 34 9999999999999888743
Q ss_pred -----------------CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC---------eEEEEeCCC
Q 007768 365 -----------------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK---------KIVQWDMNT 418 (590)
Q Consensus 365 -----------------g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg---------~I~iwD~~t 418 (590)
..|.+||+.+++.+..+... ....+.|++++ +++++..++ .|+++| +
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg----~~~~~~~~~~~~~~~~~~~l~~~d--~ 207 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK----IVVNVPHREIIPQYFKFWDIYIWE--D 207 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE----EEEEEECCCSSCCSSCCEEEEEEE--T
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe----EEEEEecccccccccccccEEEeC--C
Confidence 57999999998874444333 55667777643 666665432 455566 5
Q ss_pred CceEEEEcCcCCceeEEEEeCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeecCCCCceeE-EEEcCCCCEEEE
Q 007768 419 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPS-ISLHPNTNWLAA 489 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~i~~-i~~sp~g~~la~ 489 (590)
++.. .+..+ ..+..+ +|+|++|+.++.+ ..|.+|| .+. ...+...+...+.. +.|+ ++ ++++
T Consensus 208 ~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 208 GKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp TEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred CceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEE
Confidence 5543 33334 445444 9999988887754 3677777 333 34444445667776 8999 88 8899
Q ss_pred EEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE-EEEeCCCCeEEEEEecCCC
Q 007768 490 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC-WFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I-~iwd~~t~~~~~~l~~h~~ 562 (590)
++.++.++|| +.++.. ..+..+ ...+..++|+| .++++++.++.. .||.+. ++ ...+..|..
T Consensus 279 ~~~~~~~~l~-~~~g~~----~~~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEI----KPIAKG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEETTEEEEE-EESSSE----EEEECS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EecCCcEEEE-EcCCce----EEEecC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 9999999999 874322 112222 35677899999 677777777654 666665 54 344554443
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=1.6e-12 Score=127.92 Aligned_cols=235 Identities=6% Similarity=-0.001 Sum_probs=162.5
Q ss_pred CeEEEEEccCCCEEE-EEecCCeEEEEECCCCcEEEEec-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE
Q 007768 345 AVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 345 ~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~ 422 (590)
...+++++++|++++ +.+.++.|.+||..++....... ....+..+.+.+++ .++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g---~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG---TVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC---CEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC---CEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999998777 54778999999987655432211 22345566676543 4555544 889999998876543
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 423 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
.........+.++++.++++.+++...++.|.+|+.......... ......+.+++++++++++++...++.|.+|+..
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 222233357899999999998888778889999986655433222 2233467889999999977777678899999987
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
....... .. .. ...+..++++++|.++++...++.|.+|+............+...+.++++++ ++.++++...
T Consensus 180 ~~~~~~~--~~-~~--~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~ 253 (270)
T 1rwi_B 180 SNNQVVL--PF-TD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRG 253 (270)
T ss_dssp TCCEEEC--CC-SS--CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGG
T ss_pred CCceEee--cc-cC--CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECC
Confidence 6543211 11 11 14567899999998888887889999999876544332223335689999999 5678888888
Q ss_pred CCcEEEcC
Q 007768 583 DGLIKYWD 590 (590)
Q Consensus 583 Dg~I~iWD 590 (590)
++.|++++
T Consensus 254 ~~~v~~~~ 261 (270)
T 1rwi_B 254 NDRVVKLT 261 (270)
T ss_dssp GTEEEEEC
T ss_pred CCEEEEEc
Confidence 99999985
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=3e-11 Score=125.64 Aligned_cols=268 Identities=9% Similarity=-0.028 Sum_probs=180.3
Q ss_pred CCCCCEEEEEeC--CC---cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEe----------cCCeEEEEECC
Q 007768 309 PKYGHLILSAGM--DT---KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTE 373 (590)
Q Consensus 309 p~~g~~L~sgs~--Dg---~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s----------~Dg~I~vWd~~ 373 (590)
|+ +++++++.. .. .|.++|. .+++.+.++.....+ .++|+|||++|+++. .++.|.+||+.
T Consensus 30 ~~-~~~~yv~~~~~~~~~~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 30 AD-GRRSYINLPAHHSAIIQQWVLDA-GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CC-CCEEEEeCCcccCCccEEEEEEC-CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 45 566666553 22 7899999 577777777654444 999999999999886 36789999999
Q ss_pred CCcEEEEecCC--------CcceEEEEecCCCCCcEEEEEE-C-CCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCC-
Q 007768 374 TGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSN- 441 (590)
Q Consensus 374 t~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~iwD~~t~~~~~~-~~~h~~~V~~i~~~p~~- 441 (590)
+++.+..+..+ ..+..+.++|++ .+|+++. . ++.|.++| .+++.+.. +... + |+.+.|++
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG---~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~ 177 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNN---ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAP 177 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCC---CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCC
Confidence 99988877654 345567777765 3555554 3 58899999 99988877 5432 1 24455554
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeec----CCCCc-eeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee--eccccccc
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQ--LNKKKRFA 514 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~----~~~~~-i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~--~~~~~~~~ 514 (590)
+.+++.+.||.+.++|. .+........ ....+ .....+.+++..++..+..+.+.+.|+..... ...+....
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 46677888999999999 7666533210 11111 12345566665555555788999999865321 11111000
Q ss_pred C-----cccccceEEEEEcCCCCEEEEEcC----------CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEE
Q 007768 515 G-----HIVAGYACQVNFSPDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 515 ~-----~~~~~~v~~v~~spdg~~l~sgs~----------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
. .........+.++|+++.|+++.. .+.|.++|..+++.+.++.... ...+++|+|++..++++
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v 335 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYA 335 (373)
T ss_pred CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEE
Confidence 0 000112334789999998887653 3579999999999999997543 47899999954437777
Q ss_pred Ee-CCCcEEEcC
Q 007768 580 CG-WDGLIKYWD 590 (590)
Q Consensus 580 ~g-~Dg~I~iWD 590 (590)
+. .++.|.+||
T Consensus 336 ~~~~~~~V~ViD 347 (373)
T 2mad_H 336 LSAGTEVLHIYD 347 (373)
T ss_pred EcCCCCeEEEEE
Confidence 77 489999987
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=1.7e-13 Score=154.63 Aligned_cols=241 Identities=9% Similarity=-0.032 Sum_probs=156.6
Q ss_pred cCCCCeEEEEEccCCCEEEE-----EecCCeEEEEECCCCcEE-EEecCCCcceEEEEecCCCCCcEEEEEECCCe----
Q 007768 341 GHSKAVRDISFCNDGTKFLT-----ASYDKNIKYWDTETGQVI-RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK---- 410 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s-----~s~Dg~I~vWd~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~---- 410 (590)
+|...+..++|||||++|+. |+.+..|++||+.+++.+ ...........+.|++++ ..|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg---~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS---KGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTS---SEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCC---CEEEEEEecCCCCCc
Confidence 35557999999999999983 444568999999999865 211111112467777765 45777776665
Q ss_pred ---------EEEEeCCCCc----eEEEEcCcCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCCcEEEEeecCCCC
Q 007768 411 ---------IVQWDMNTKE----ITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 411 ---------I~iwD~~t~~----~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg----~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
|++|++.++. ++.....|...+.++.|+|+|++|+.++.++ .|++|+....... .+.. +..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~-~~~ 272 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVK-GVG 272 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEE-CSS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eeec-CCC
Confidence 9999999875 3333334556789999999999998887666 6777765444333 3332 333
Q ss_pred ceeEEEEcCCCCEEEEEEc----CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 474 SMPSISLHPNTNWLAAQSL----DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.+....+ +++. |+..+. ++.|.+|++.++... ....+..+.....+..++|+ ++.++++...++..+||.+.
T Consensus 273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 4555555 5666 544443 578999998765321 01122222112346678888 77888888889988877654
Q ss_pred -CCeEEEEEecC-CCcEEEEEEcCCCCCEEEEEeC---CCcEEEcC
Q 007768 550 -SCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 590 (590)
Q Consensus 550 -t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~---Dg~I~iWD 590 (590)
+++....+..+ .+.|..+.++|++..++++.+. .++|++||
T Consensus 349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 46666666655 5677888899944444444432 46688775
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=5e-11 Score=123.93 Aligned_cols=251 Identities=7% Similarity=-0.047 Sum_probs=173.1
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCeeEEEeccC-------CCCeEEEEEc
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFC 352 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fs 352 (590)
+++.++..-..+ .++|+|+ +++|+.+. .++.|.+||. .+.+.+..+.-. ...-..+.|+
T Consensus 58 ~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~-~t~~~~~~i~~~~~~~~~~g~~p~~~~~s 133 (373)
T 2mad_H 58 SILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFDVGPYSWMNANT 133 (373)
T ss_pred eEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEEC-CCCcEEEEEECCCccccccCCCccceEEC
Confidence 455666544444 9999999 78877775 3678999999 566666655321 1234689999
Q ss_pred cCCCEEEEEec--CCeEEEEECCCCcEEEE-ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc---
Q 007768 353 NDGTKFLTASY--DKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--- 426 (590)
Q Consensus 353 pdg~~l~s~s~--Dg~I~vWd~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~--- 426 (590)
|||++|+++.. ++.|.++| .+++.+.. +..+.. +.+.+.+. ..+++.+.||.+.++|. +++.+....
T Consensus 134 pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~--~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~ 206 (373)
T 2mad_H 134 PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAP--STFYLLCAQGGLAKTDH-AGGAAGAGLVGA 206 (373)
T ss_pred CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCC--ceEEEEcCCCCEEEEEC-CCcEEEEEeccc
Confidence 99999998874 47899999 99999888 765432 44445443 56778888999999999 887664322
Q ss_pred --CcCCc-eeEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEeecC---------CCCceeEEEEcCCCCEEEEEEc
Q 007768 427 --QHLGA-VNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEP---------HMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 427 --~h~~~-V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~~---------~~~~i~~i~~sp~g~~la~~s~ 492 (590)
....+ .....+.+++..++..+..+.+.+.|+.... .+..+... .......+.++|+++.+++...
T Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~ 286 (373)
T 2mad_H 207 MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS 286 (373)
T ss_pred cccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEec
Confidence 11112 1234566666665555578899999986542 22222110 1122344788999988887653
Q ss_pred ----------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEc-CCCcEEEEeCCCCeEEEEE
Q 007768 493 ----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 493 ----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~t~~~~~~l 557 (590)
.+.|.++|+.+...+..+.. ......++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus 287 ~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 287 EQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cCCcccccCCCCeEEEEECCCCEEEEEEEC------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 35799999988766554421 12355799999999 777777 5899999999999999884
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=3.8e-12 Score=131.51 Aligned_cols=271 Identities=15% Similarity=0.063 Sum_probs=184.6
Q ss_pred cCCCCCEEEEEeC-----CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEe----------cCCeEEEEEC
Q 007768 308 FPKYGHLILSAGM-----DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDT 372 (590)
Q Consensus 308 sp~~g~~L~sgs~-----Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s----------~Dg~I~vWd~ 372 (590)
.|+ ++.+++... ++.|.+.|. .+.+.+.++..-..+ . ++++|||++|++++ .++.|.+||+
T Consensus 41 ~pd-~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 41 APD-ARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCC-TTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCC-CCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 466 666666654 679999999 678888888755555 4 99999999988776 3678999999
Q ss_pred CCCcEEEEecCC--------CcceEEEEecCCCCCcEEEEEE-C-CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC
Q 007768 373 ETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 373 ~t~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
.+++.+..+..+ ..+..+.+++++ ..++++. . ++.|.++|+.+++.+.++.... . ...+....+
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG---k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~ 190 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDG---KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPD 190 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETT
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCC---CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCc
Confidence 999999888653 256678888866 3455554 3 6899999999999998885322 1 223333456
Q ss_pred EEEEEeCCCcEEEEECCC-CcEEEEeec---CCCCcee-EEEEc-CCCCEEEEEEcCCeEEEEEcCCce--eeccccccc
Q 007768 443 RFVTSSDDKSLRVWEFGI-PVVIKYISE---PHMHSMP-SISLH-PNTNWLAAQSLDNQILIYSTRERF--QLNKKKRFA 514 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~-~~~~~~~~~---~~~~~i~-~i~~s-p~g~~la~~s~dg~I~iwd~~~~~--~~~~~~~~~ 514 (590)
.|++.+.||.+.+.++.. ++....... ....++. ...|. ++|++++ .+.+|.|+++|+.+.. .......+.
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccc
Confidence 788889999999999876 443322111 1112221 24554 5665544 5668999999986543 221111010
Q ss_pred -----CcccccceEEEEEcCCCCEEEEEcC----------CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEE
Q 007768 515 -----GHIVAGYACQVNFSPDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 515 -----~~~~~~~v~~v~~spdg~~l~sgs~----------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
..........++++++++.|+.... ...|.++|+.+++.+..+.... .+.+|++++++..+|++
T Consensus 270 ~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 270 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYA 348 (386)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEE
T ss_pred cccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEE
Confidence 0111122234788999998887642 2579999999999999987533 57899999955446655
Q ss_pred -EeCCCcEEEcC
Q 007768 580 -CGWDGLIKYWD 590 (590)
Q Consensus 580 -~g~Dg~I~iWD 590 (590)
...++.|.++|
T Consensus 349 tn~~~~~VsViD 360 (386)
T 3sjl_D 349 LSTGDKTLYIHD 360 (386)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCeEEEEE
Confidence 45589999886
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=7.2e-12 Score=129.44 Aligned_cols=266 Identities=11% Similarity=0.077 Sum_probs=182.5
Q ss_pred cceEEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCeeEEEeccC-------CCCeEEEEE
Q 007768 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISF 351 (590)
Q Consensus 289 ~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~f 351 (590)
.+.+.++..-..+ .++++|+ +++|++++ .++.|.+||. .+.+.+..+.-. ...-..++|
T Consensus 69 ~~v~~~I~vG~~P--~va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~-~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADD-GSFIAHASTVFSRIARGERTDYVEVFDP-VTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CeEEEEEECCCCC--cEEECCC-CCEEEEEcccccccccCCCCCEEEEEEC-CCCeEEEEEECCCccccccCCCCceEEE
Confidence 4566666654445 4999999 66666554 3678999999 677777776422 124567999
Q ss_pred ccCCCEEEEEec--CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-CceEEEEcCc
Q 007768 352 CNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQH 428 (590)
Q Consensus 352 spdg~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-~~~~~~~~~h 428 (590)
+|||++|+++.. ++.|.++|+.+++.+.++..... ..+.|.+ ...+++.+.||++.+.++.+ ++.......+
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g--~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~ 219 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTA--PDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEE--TTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCC--CceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence 999999998874 68999999999999999876542 3333433 25677889999999999986 6654332222
Q ss_pred C----Cce-eEEEEe-CCCCEEEEEeCCCcEEEEECCCCc--EEEEeec---------CCCCceeEEEEcCCCCEEEEEE
Q 007768 429 L----GAV-NTITFV-DSNRRFVTSSDDKSLRVWEFGIPV--VIKYISE---------PHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 429 ~----~~V-~~i~~~-p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~---------~~~~~i~~i~~sp~g~~la~~s 491 (590)
. .++ ....|. ++|+ ++..+.+|.|++.|+.... .+..+.. -....+..++++++++.+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~ 298 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 298 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eccccccccccceeEcCCCc-EEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence 1 122 224665 5664 4446668999999996653 2222210 0112344578899999888865
Q ss_pred c----------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEE-cCCCcEEEEeCCCCeEEEEEec
Q 007768 492 L----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSG-DGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 492 ~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-s~dg~I~iwd~~t~~~~~~l~~ 559 (590)
. .+.|.++|+.+...+..+.. ...+..+.|++|++ +|++. ..++.|.++|..+++.+.++..
T Consensus 299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEEC------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 3 25799999998876654442 23455799999997 66665 4589999999999999999975
Q ss_pred CCCcEEEEEEcC
Q 007768 560 HEGVCIGCEWHP 571 (590)
Q Consensus 560 h~~~V~~v~~sp 571 (590)
-.. -..+.+++
T Consensus 373 ~~~-p~~l~~s~ 383 (386)
T 3sjl_D 373 LGH-GPQVITTA 383 (386)
T ss_dssp CCS-SCCEEEEC
T ss_pred CCC-CceeEECC
Confidence 433 24556665
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=7.5e-12 Score=124.57 Aligned_cols=212 Identities=10% Similarity=0.021 Sum_probs=164.2
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEecCCC--cceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC-C
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-G 430 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~-~ 430 (590)
.+++|++++.++.|.+||.++|+.+..+..+. ....+.+.+++ ++++ +.++.|+.||. +++.+..+..+. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG---~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG---EILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS---CEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC---CEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 46789999999999999999999999998764 46677777754 5666 45788999999 899999987653 5
Q ss_pred ceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEeecC-----CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007768 431 AVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISEP-----HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~~~~~~~~~-----~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~ 504 (590)
.+.++.+.++|+++++.+. ++.|..+|. .++.+..+... +......+++.++|++|++...++.|.+||.. +
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 7889999999999999887 777877775 55555554321 11235567789999999999999999999987 5
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC------CcEEEEEEcCCCCCEEE
Q 007768 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE------GVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~------~~V~~v~~sp~~~~~l~ 578 (590)
..+...... .....+.+.++|+++++++.+++|..+|..+|+.+..+..+. ..+.+++..+ ++.+++
T Consensus 156 ~~~w~~~~~------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 156 QLLNSVKLS------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp CEEEEEECS------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEE
T ss_pred CEEEEEECC------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEE
Confidence 555433321 223357788999999999989999999999999999997542 2377888888 666777
Q ss_pred EE
Q 007768 579 TC 580 (590)
Q Consensus 579 s~ 580 (590)
+.
T Consensus 229 ~~ 230 (276)
T 3no2_A 229 CN 230 (276)
T ss_dssp EE
T ss_pred Ee
Confidence 66
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=6.4e-12 Score=126.34 Aligned_cols=242 Identities=12% Similarity=0.121 Sum_probs=162.6
Q ss_pred ccCCCCeEEEEEccCCCEEEE-------EecCCeEEEEECCCCcEEEEec-----CCCcceEEEEecCCCCCcEEEEEEC
Q 007768 340 MGHSKAVRDISFCNDGTKFLT-------ASYDKNIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMS 407 (590)
Q Consensus 340 ~~h~~~V~~l~fspdg~~l~s-------~s~Dg~I~vWd~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~~ 407 (590)
...-....+++|+++++++++ +..++.|.+||..+++...... ....+..+.+.++ .+. +++++.
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~--~g~-l~v~~~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD--ANQ-LFVADM 90 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS--SSE-EEEEET
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC--CCc-EEEEEC
Confidence 334456789999999988887 6778999999998887654322 1233445555543 123 444555
Q ss_pred CCeEEEEeCCCCceEEE-EcC----cCCceeEEEEeCCCCEEEEEeCC---------------CcEEEEECCCCcEEEEe
Q 007768 408 DKKIVQWDMNTKEITQE-YDQ----HLGAVNTITFVDSNRRFVTSSDD---------------KSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 408 dg~I~iwD~~t~~~~~~-~~~----h~~~V~~i~~~p~~~~l~s~s~D---------------g~I~iwdl~~~~~~~~~ 467 (590)
.+.|.+||.. ++.... ... ....+.++++.++++++++...+ +.|..|+.. +......
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 5589999998 765433 221 12358899999999888777655 567777765 4333222
Q ss_pred ecCCCCceeEEEEc----CCCCEEEEE-EcCCeEEEEEcC-Cceee--cccccccCcccccceEEEEEcCCCCEEEEEcC
Q 007768 468 SEPHMHSMPSISLH----PNTNWLAAQ-SLDNQILIYSTR-ERFQL--NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 468 ~~~~~~~i~~i~~s----p~g~~la~~-s~dg~I~iwd~~-~~~~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
........++++ |+++.|+++ ..++.|.+|++. .+... .....+.++. ......++++++|+++++...
T Consensus 169 --~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 --TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH-EGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp --EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS-SCEEEEEEEBTTCCEEEEEET
T ss_pred --cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC-CCCCCceEECCCCCEEEEEcC
Confidence 123346788999 999766555 457899999976 22211 1111222210 034567999999998888878
Q ss_pred CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCC-EEEEEeCCCcEEEcC
Q 007768 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCGWDGLIKYWD 590 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~s~g~Dg~I~iWD 590 (590)
++.|.+||..+++.+..+..+...+.+++|+| ++. ++++...++.|..||
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEe
Confidence 89999999988888888887777899999998 556 555555667787764
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=6.2e-13 Score=149.99 Aligned_cols=243 Identities=13% Similarity=0.048 Sum_probs=156.0
Q ss_pred CCCCCeeEEEEcCCCCCEEE-----EEeCCCcEEEEecCCCCeeEEEeccCCCCe--EEEEEccCCCEEEEEecCCe---
Q 007768 297 GHTKGVSAIRFFPKYGHLIL-----SAGMDTKVKIWDVVNSGKCMRTYMGHSKAV--RDISFCNDGTKFLTASYDKN--- 366 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~-----sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V--~~l~fspdg~~l~s~s~Dg~--- 366 (590)
+|...+.+++|||+ |++|+ +|+.+..|++||+ .+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl-~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDV-DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEET-TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEEC-CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence 56678999999999 78777 3344568999999 5555431 1122223 68999999999999998776
Q ss_pred ----------EEEEECCCCcE--EEEecC-C--CcceEEEEecCCCCCcEEEEEECCC----eEEEEeCCCCceEEEEcC
Q 007768 367 ----------IKYWDTETGQV--IRTFST-G--KIPYVVKLNPDDDKQNILLAGMSDK----KIVQWDMNTKEITQEYDQ 427 (590)
Q Consensus 367 ----------I~vWd~~t~~~--~~~~~~-~--~~~~~~~~~~~~~~~~~lvsg~~dg----~I~iwD~~t~~~~~~~~~ 427 (590)
|++|++.++.. ...+.. . .......+++++ .+|+.++.++ .|++|+..+++.. .+..
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~ 269 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG---KYLFVYILRGWSENDVYWKRPGEKDFR-LLVK 269 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS---CCEEEEEEETTTEEEEEEECTTCSSCE-EEEE
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC---CEEEEEEeCCCCceEEEEEcCCCCceE-Eeec
Confidence 99999998862 233322 1 233455666654 3344444444 7888877666543 3444
Q ss_pred cCCceeEEEEeCCCCEEEEEe---CCCcEEEEECCCCcE--EEEeecCC-CCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 428 HLGAVNTITFVDSNRRFVTSS---DDKSLRVWEFGIPVV--IKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s---~Dg~I~iwdl~~~~~--~~~~~~~~-~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
+...+....+ +++.+++++. .++.|.+||+.++.. ...+...+ ...+..++++ ++.++++...|+..+||.+
T Consensus 270 ~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 5556666666 4555444443 257899999977642 23333223 4567888888 6778888888998888765
Q ss_pred C-CceeecccccccCcccccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCeE
Q 007768 502 R-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKV 553 (590)
Q Consensus 502 ~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg----s~dg~I~iwd~~t~~~ 553 (590)
. .+..... +..+ ..+.+..++++|++..|+.. ...+.|++||+.+++.
T Consensus 348 ~~~g~~~~~---l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 348 TLKGKPVRT---VQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTCCEEEE---CCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eCCCCeeEE---ecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4 2222211 1111 12445567889999877633 3457899999988764
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.47 E-value=8.5e-11 Score=116.78 Aligned_cols=237 Identities=10% Similarity=-0.032 Sum_probs=164.5
Q ss_pred cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec--CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC
Q 007768 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t 418 (590)
.+...+.++++.++|+++++...++.|.+||.. ++...... ....+..+.+.++ +.++++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD---GEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC---CCEEEeCCCCCeEEEECCC-
Confidence 455679999999999977776668999999998 65443221 2234445555543 3566666668899999986
Q ss_pred CceEE-EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEE
Q 007768 419 KEITQ-EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 497 (590)
Q Consensus 419 ~~~~~-~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~ 497 (590)
++... .+......+.++++.++++.+++...++.|.+||. .+.............+..+++++++.++++...++.|.
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 43322 22234567899999999988888877889999998 44443332223455688999999998877776778999
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEE-EecCCCcEEEEEEcCCCCCE
Q 007768 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~~ 576 (590)
+|+. ++.... . ..... ...+..++++++|+++++...++.|.+||. +++.... +..+...+.++++.+ ++.+
T Consensus 166 ~~~~-~g~~~~-~-~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l 238 (299)
T 2z2n_A 166 RITE-SGDITE-F-KIPTP--ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDL 238 (299)
T ss_dssp EECT-TCCEEE-E-ECSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCE
T ss_pred EEcC-CCcEEE-e-eCCCC--CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCE
Confidence 9998 433221 1 11111 234668999999998877777889999998 6664432 223456789999999 5666
Q ss_pred EEEEeCCCcEEEcC
Q 007768 577 VATCGWDGLIKYWD 590 (590)
Q Consensus 577 l~s~g~Dg~I~iWD 590 (590)
+++...++.|.+||
T Consensus 239 ~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 239 WFTEWGANKIGRLT 252 (299)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEeccCCceEEEEC
Confidence 66665677888775
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=1.1e-10 Score=117.03 Aligned_cols=234 Identities=12% Similarity=0.083 Sum_probs=155.6
Q ss_pred cCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC
Q 007768 341 GHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 341 ~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~ 419 (590)
.+..-..+..|+++ +.++++...++.|..||..++.. ..+.....+..+.+.+++ . ++++. ++.|.+||..++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG---~-l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSG---G-YVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTS---S-EEEEE-TTEEEEEETTTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCC---C-EEEEE-CCeEEEEECCCC
Confidence 34445668899995 45566666789999999998765 344455566677776654 3 44444 678999999988
Q ss_pred ceEEEEcC----cCCceeEEEEeCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCE
Q 007768 420 EITQEYDQ----HLGAVNTITFVDSNRRFVTSSDD---------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 420 ~~~~~~~~----h~~~V~~i~~~p~~~~l~s~s~D---------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
+....... ....++.+++.|+|+++++.... ....||.+........+. ........++|+|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EEESBEEEEEECTTSCE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-eccccccceEEcCCCCE
Confidence 65443322 12357899999999977655321 234555554322222222 12344678999999987
Q ss_pred EEEE-EcCCeEEEEEcC--Cceeec--ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC
Q 007768 487 LAAQ-SLDNQILIYSTR--ERFQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 487 la~~-s~dg~I~iwd~~--~~~~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
|+++ +.++.|.+|++. ++.... ....+... .+....++++++|++.++....+.|..||..+++.+..+..+.
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~--~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE--EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG--GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC--CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 7555 457889999973 332111 11111111 2456679999999988888788899999999999999999887
Q ss_pred CcEEEEEEc-CCCCCEEEEEeCC
Q 007768 562 GVCIGCEWH-PLEQSKVATCGWD 583 (590)
Q Consensus 562 ~~V~~v~~s-p~~~~~l~s~g~D 583 (590)
..+++++|. |+...+++|...+
T Consensus 241 ~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp SBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCceEEEEeCCCCCEEEEEcCCc
Confidence 789999998 7444455555543
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.45 E-value=9.2e-11 Score=123.52 Aligned_cols=240 Identities=11% Similarity=0.124 Sum_probs=161.8
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC--eEEEEECCCCcE
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK--NIKYWDTETGQV 377 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg--~I~vWd~~t~~~ 377 (590)
.....|+|+++ ++++++...++.|++||. ..+........ ..... ++|+++++.|+++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~-~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISV-DDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEET-TTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEEC-CCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 35789999998 778888777899999998 45555444433 33344 99999999999888866 799999877665
Q ss_pred EEEe----c-CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE----EcCcCCce--eEEEEeCC-CCEEE
Q 007768 378 IRTF----S-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE----YDQHLGAV--NTITFVDS-NRRFV 445 (590)
Q Consensus 378 ~~~~----~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~----~~~h~~~V--~~i~~~p~-~~~l~ 445 (590)
...+ . ....+..+++.+.. +. |+++..++.|+.||..++..... ..++...- +.++|+|+ +.+++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~--g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETE--EW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTS--SE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCC--Ce-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 4444 2 33455667776632 23 45577789999999988764332 22222222 39999995 55566
Q ss_pred EEeCCCcEEEEECCCCcEEEEeecCC--------------CCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeccc
Q 007768 446 TSSDDKSLRVWEFGIPVVIKYISEPH--------------MHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~~~~~~~~~~~--------------~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~ 510 (590)
+-...+.|+.|+.... +..+.... ......++++++|+++++-+ .++.|+.|++.++......
T Consensus 284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 6667889999997654 22222111 23477899999999777777 7899999997655422111
Q ss_pred cc--ccCc-------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 511 KR--FAGH-------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 511 ~~--~~~~-------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.. ..+. ..-.....++++++|.++++-..+++|+.+++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 10 0000 00134678999999888888888888888764
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=1.2e-11 Score=140.43 Aligned_cols=238 Identities=11% Similarity=0.049 Sum_probs=152.4
Q ss_pred CCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC-------
Q 007768 342 HSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK------- 409 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg------- 409 (590)
|...+..++|||||++|+.++.+ ..|++||+.+++.+...........+.|+++ . .|+.+..++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQAF 236 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-S---EEEEEECCCC------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-C---EEEEEEecCccccccc
Confidence 33468899999999999887654 4699999999987654211111134556664 2 344444443
Q ss_pred -------eEEEEeCCCCce--EEEEc--CcCCceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCC--cEEEEeecCC
Q 007768 410 -------KIVQWDMNTKEI--TQEYD--QHLGAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIP--VVIKYISEPH 471 (590)
Q Consensus 410 -------~I~iwD~~t~~~--~~~~~--~h~~~V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~--~~~~~~~~~~ 471 (590)
.|++|++.++.. ...+. .+...+..+.|+|+|++|+..+.++ .|++||+..+ .....+.. +
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~ 315 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-D 315 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-S
T ss_pred ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-C
Confidence 499999987752 23333 3334588999999999988877544 8999999776 31344433 3
Q ss_pred CCceeEEEEcCCCCEEEEEEcC----CeEEEEEcCCce-eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007768 472 MHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~la~~s~d----g~I~iwd~~~~~-~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
...+... ++|+++.|+..+.+ +.|.+|++.+.. .... .+..+ ...+..++|+ ++.++++...+|..+||
T Consensus 316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~--l~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT--VVPES--KDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE--EECCC--SSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEE--EecCC--CCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 3333443 34889988888764 459999987642 1111 12222 2235567777 66778888888887766
Q ss_pred eCC-CCeEEEEEecC-CCcEEEEEEcCCCCCEEEEEeC---CCcEEEcC
Q 007768 547 DWK-SCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 590 (590)
Q Consensus 547 d~~-t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~---Dg~I~iWD 590 (590)
.+. ++.....+..+ .+.|..+.++|++..++++.+. .++|++||
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 544 46666666653 5678899999955545554443 36677775
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=2.9e-11 Score=127.07 Aligned_cols=257 Identities=12% Similarity=0.033 Sum_probs=178.0
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEe----------cCCeEEEEECCCCcEEEEecCC-------
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTETGQVIRTFSTG------- 384 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s----------~Dg~I~vWd~~t~~~~~~~~~~------- 384 (590)
+.|.++|. .+.+.+.++..-..+ .++++|||++|+++. .++.|.++|..+++.+..+..+
T Consensus 99 ~~VsVID~-~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDG-STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEEC-CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 68999999 688888888755555 899999999988886 3678999999999999887653
Q ss_pred -CcceEEEEecCCCCCcEEEEEE-C-CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 007768 385 -KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 385 -~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~ 460 (590)
..+..+.+++++ .+++++. . ++.|.++|+.+++.+..+.... . ....|+ .+.+++.+.||.+.+.++..
T Consensus 176 g~~P~~~~~spDG---k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 176 GTYQWMNALTPDN---KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp SCCGGGSEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred CCCcceEEEcCCC---CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 345667787765 3555554 3 6899999999999988876422 1 233343 35677778888888888855
Q ss_pred CcEEEEe----ecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee--cccccc------cCcccccceEEEEEc
Q 007768 461 PVVIKYI----SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL--NKKKRF------AGHIVAGYACQVNFS 528 (590)
Q Consensus 461 ~~~~~~~----~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~--~~~~~~------~~~~~~~~v~~v~~s 528 (590)
.+..... ..........+.+.+++..++..+..+.|.+.|....... ...... .+.. ......++++
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~-p~g~~~va~s 327 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR-PGGWQQTAYH 327 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE-ECSSSCEEEE
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc-cCCceeeEEc
Confidence 5443221 1111111234567889888888888899999998653211 111100 0000 1111136899
Q ss_pred CCCCEEEEEcC----------CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEe-CCCcEEEcC
Q 007768 529 PDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs~----------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~Dg~I~iWD 590 (590)
|+++.+++... .+.|.++|..+.+.+.++.... ...+++|+|++..+|+++. .++.|.++|
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 99998777642 3579999999999999997543 4789999994442777777 589999986
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=3.5e-11 Score=126.36 Aligned_cols=255 Identities=11% Similarity=0.072 Sum_probs=180.1
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCeeEEEeccC-------CCCeEEEE
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDIS 350 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~ 350 (590)
..+.+.++..-..+ .+.++|+ +++|+++. .++.|.++|. .+.+.+..+.-. ......+.
T Consensus 108 t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~-~t~~vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDP-VTFLPIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred CCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEEC-CCCcEEEEEECCCccccccCCCcceEE
Confidence 34566666544455 8999999 66666654 4678999999 577777766421 23456789
Q ss_pred EccCCCEEEEEec--CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE---
Q 007768 351 FCNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--- 425 (590)
Q Consensus 351 fspdg~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~--- 425 (590)
|+|||++|+++.. ++.|.+.|+.+++.+..+..+.. ....+.+. ..+++.+.||.+.+.++.+++.....
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~--~~~v~~~~dG~~~~V~~~~~~v~~~~~~~ 258 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASP--TVFYMNCRDGSLARVDFADGETKVTNTEV 258 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET--TEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCC--cEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence 9999999999875 57899999999999998876543 33444432 56778888999999999766655322
Q ss_pred -cCcCCc-eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE--EeecC---------CCCceeEEEEcCCCCEEEEEEc
Q 007768 426 -DQHLGA-VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK--YISEP---------HMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 426 -~~h~~~-V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~--~~~~~---------~~~~i~~i~~sp~g~~la~~s~ 492 (590)
.....+ ...+.+.+++..++..+..+.|.+.|+....... .+... .......++++|+++.+++...
T Consensus 259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 111112 1235678888888888888999999986543221 11100 0111223789999887777643
Q ss_pred ----------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEc-CCCcEEEEeCCCCeEEEEE
Q 007768 493 ----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 493 ----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~t~~~~~~l 557 (590)
.+.|.++|+.+...+..+.. ......+.|+|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~kvv~~I~v------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETGERINKIEL------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCCEEEEEECCCCeEEEEEEC------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 35799999998776654432 22355799999999 888887 5899999999999999997
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.42 E-value=1.4e-11 Score=126.43 Aligned_cols=270 Identities=11% Similarity=0.097 Sum_probs=177.3
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCCEEEEEe--CCCcEEEEecCCCCeeEEEe-------ccCCCCeEEEEEccCCCEEEE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG--MDTKVKIWDVVNSGKCMRTY-------MGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs--~Dg~I~iWd~~~~~~~~~~~-------~~h~~~V~~l~fspdg~~l~s 360 (590)
+.++.+. ..+..|+++|+ ++++++.. .++.++||.+. .++. ..+ ..|...+.+|+|+++++++++
T Consensus 10 ~~v~~~~---~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~ 83 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWML 83 (343)
T ss_dssp EEEEEES---SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred EEEEEcC---CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence 3444444 67999999999 88888864 23447777774 4443 322 134568999999999876665
Q ss_pred Eec-----CCeEEEEECCCCcEEEEecCCC-------cceEEEEecCCCCCcEEEEEE---CCCeEEEEeCCCCceEEEE
Q 007768 361 ASY-----DKNIKYWDTETGQVIRTFSTGK-------IPYVVKLNPDDDKQNILLAGM---SDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 361 ~s~-----Dg~I~vWd~~t~~~~~~~~~~~-------~~~~~~~~~~~~~~~~lvsg~---~dg~I~iwD~~t~~~~~~~ 425 (590)
-.. ++.|.+||+.+++.+..+.... ....+.+.+.. +.++++.. .++.|.+||+.+++....+
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~--g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH--NFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT--TEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC--CEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 443 5789999999999877765431 23456666532 34556655 6789999999998877776
Q ss_pred cCcCCcee-EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC-eEEEEEcCC
Q 007768 426 DQHLGAVN-TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRE 503 (590)
Q Consensus 426 ~~h~~~V~-~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg-~I~iwd~~~ 503 (590)
..|..... ...+..++..|.+.+.++.+..|. ..+..|+|+|+++.|+++...+ .|..++...
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred cCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence 55432211 134455677777778888876553 1356799999999998887766 555555321
Q ss_pred ce--eecc---cccc--cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec-CCCcEEEEEEcCCCCC
Q 007768 504 RF--QLNK---KKRF--AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQS 575 (590)
Q Consensus 504 ~~--~~~~---~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~ 575 (590)
.. .+.. ...+ .++ .+....++++++|.++++...++.|.+||..+++....... +...+.+++|.+ ++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~g~--~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~ 303 (343)
T 2qe8_A 227 LSNLQLTDAELGSKIERYSE--KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-DGY 303 (343)
T ss_dssp HTCTTCCHHHHHTTCEEEEE--CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-TSC
T ss_pred hcCCCCChhhhhcceEeccc--CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-CCc
Confidence 00 0000 0000 011 12344589999999999999999999999866765443332 234689999998 566
Q ss_pred EEEEEeCCCc
Q 007768 576 KVATCGWDGL 585 (590)
Q Consensus 576 ~l~s~g~Dg~ 585 (590)
++++.+..+.
T Consensus 304 l~v~~~~~~~ 313 (343)
T 2qe8_A 304 LYFDCNQLHH 313 (343)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 7777664433
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=2.6e-10 Score=120.08 Aligned_cols=240 Identities=9% Similarity=0.024 Sum_probs=164.9
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCce
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEI 421 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~ 421 (590)
.....|+|+++++++++...++.|++||..++...........+. +++.+++ ..|+++..++ .|++|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g---~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK---QRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS---SEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC---CcEEEEecCCCceEEEEEcCCCce
Confidence 357899999999977777778999999999888776666555555 7777654 4667776655 899999877654
Q ss_pred EEEE----cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCCce--eEEEEcCC-CCEEEEEE
Q 007768 422 TQEY----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI---SEPHMHSM--PSISLHPN-TNWLAAQS 491 (590)
Q Consensus 422 ~~~~----~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~---~~~~~~~i--~~i~~sp~-g~~la~~s 491 (590)
...+ ......+.+++++|++..|+++..++.|+.||.......... ........ ..++|+|+ +.++++..
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 225567889999996566666777889999999876543221 11122222 39999996 55555555
Q ss_pred cCCeEEEEEcCCceeeccccc-ccCcc-------cccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEecC--
Q 007768 492 LDNQILIYSTRERFQLNKKKR-FAGHI-------VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCH-- 560 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~~-~~~~~-------~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h-- 560 (590)
.++.|+.|+.........-.. ..+.. .-.....++++|+|+++++-. .++.|+.|++.++.. .++.++
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~ 365 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD 365 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence 678899998765321100000 00000 012366899999999888877 899999999888874 444443
Q ss_pred -------------CCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 561 -------------EGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 561 -------------~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
-....++++++ ++.++++-..++.|+.+
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEE
Confidence 13578999999 57777777778888765
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.41 E-value=2.4e-10 Score=114.76 Aligned_cols=240 Identities=11% Similarity=0.161 Sum_probs=160.2
Q ss_pred cCCCCCeeEEEEcCCCCCEEEE-------EeCCCcEEEEecCCCCeeEEEec----cCCCCeEEEEEccC-CCEEEEEec
Q 007768 296 SGHTKGVSAIRFFPKYGHLILS-------AGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCND-GTKFLTASY 363 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~s-------gs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fspd-g~~l~s~s~ 363 (590)
.+.-....+++|.++ +.++++ +..++.|.+|+. ..++...... ++...+.+++++++ |+++++ +.
T Consensus 14 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDL-KTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DM 90 (314)
T ss_dssp ECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECT-TTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ET
T ss_pred hccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeC-CCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-EC
Confidence 344456789999988 788877 577889999997 3454432221 25567999999999 664444 44
Q ss_pred CCeEEEEECCCCcEEEE-ecCC-----CcceEEEEecCCCCCcEEEEEECC---------------CeEEEEeCCCCceE
Q 007768 364 DKNIKYWDTETGQVIRT-FSTG-----KIPYVVKLNPDDDKQNILLAGMSD---------------KKIVQWDMNTKEIT 422 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~lvsg~~d---------------g~I~iwD~~t~~~~ 422 (590)
.+.|.+||.. ++.... .... ..+..+.+.+++ +++++...+ +.|..||.. ++..
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG---NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI 165 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS---CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC---CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence 5579999998 776543 2211 224566665543 566665544 578888876 5543
Q ss_pred EEEcCcCCceeEEEEe----CCCCEEEEE-eCCCcEEEEECC-CCcE-----EEEeecCCC-CceeEEEEcCCCCEEEEE
Q 007768 423 QEYDQHLGAVNTITFV----DSNRRFVTS-SDDKSLRVWEFG-IPVV-----IKYISEPHM-HSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~----p~~~~l~s~-s~Dg~I~iwdl~-~~~~-----~~~~~~~~~-~~i~~i~~sp~g~~la~~ 490 (590)
... .+......++|+ ++++.|+.+ ..++.|.+|++. .+.. ...+ ..+. ..+..++++++|+++++.
T Consensus 166 ~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 166 QVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEE
T ss_pred Eec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEE
Confidence 332 344557889999 998765554 567899999976 3321 1111 1122 567889999999988888
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE-EEcCCCcEEEEeCCC
Q 007768 491 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEGKCWFWDWKS 550 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~-sgs~dg~I~iwd~~t 550 (590)
..++.|.+|+..++..... +..+ ...+.+++|+|+|++|+ +...++.|..|++..
T Consensus 244 ~~~~~i~~~d~~~g~~~~~---~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMR---IRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ETTTEEEEECTTCBSCSEE---EECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCEEEEEcCCCCcEeEE---EeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8889999999875433322 2222 24577899999999554 555678899999864
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=8.8e-11 Score=133.38 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=155.0
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCC-----CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCe-----
Q 007768 297 GHTKGVSAIRFFPKYGHLILSAGMD-----TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 366 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~sgs~D-----g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~----- 366 (590)
+|...+..++|+|+ |++|+.++.+ ..|++||+ .+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl-~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 160 DGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGV-ADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ---EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEET-TTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEEC-CCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 35557899999999 7877766543 35999999 56665443 112222467899999 99998887654
Q ss_pred ---------EEEEECCCCcE--EEEecCCC---cceEEEEecCCCCCcEEEEEECC-----CeEEEEeCCCC--ceEEEE
Q 007768 367 ---------IKYWDTETGQV--IRTFSTGK---IPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTK--EITQEY 425 (590)
Q Consensus 367 ---------I~vWd~~t~~~--~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~t~--~~~~~~ 425 (590)
|.+|++.++.. ...+.... ......+++++ ..|+..+.+ ..|++||+.++ +....+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG---RWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS---CEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC---CEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 89999988762 22333222 23445555543 345544433 48999999887 413445
Q ss_pred cCcCCceeEEEEeCCCCEEEEEeCC----CcEEEEECCCC-cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEE
Q 007768 426 DQHLGAVNTITFVDSNRRFVTSSDD----KSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 426 ~~h~~~V~~i~~~p~~~~l~s~s~D----g~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd 500 (590)
..+...+.... .|+++.|+..+.+ +.|.+||+..+ .....+...+...+..+++. ++.++++...++..+||.
T Consensus 313 ~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 313 IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred cCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 44555555553 4888888887764 45999999875 24444444455556677887 566778888888877775
Q ss_pred cC-CceeecccccccCcccccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCe
Q 007768 501 TR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCK 552 (590)
Q Consensus 501 ~~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg----s~dg~I~iwd~~t~~ 552 (590)
+. .+..... +..+ ..+.+..+.++|+++.|+.. ...+.|++||+.+++
T Consensus 391 ~~~~g~~~~~---l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAGA---VSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEEE---CBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCceee---ccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 53 2222211 2111 13557778999998866532 345789999998876
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.37 E-value=1.6e-09 Score=107.56 Aligned_cols=236 Identities=11% Similarity=-0.020 Sum_probs=162.7
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCC--CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~ 419 (590)
....+.+|++.++|+++++...++.|.+||.. ++........ ..+..+.+.++ +.++++...++.|..||.. +
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL---GDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-S
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC---CCEEEEecCCCeEEEECCC-C
Confidence 45678999999999988877778999999988 6554322111 33444555433 3566666667899999988 6
Q ss_pred ceEE-EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEE
Q 007768 420 EITQ-EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 420 ~~~~-~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~i 498 (590)
+... .+......+.++++.++++++++...++.|..||.. +.............+..++++++++++++...++.|..
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 5432 222244678999999999888887778899999987 44433222224556889999999996666666788999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEE-EecCCCcEEEEEEcCCCCCEE
Q 007768 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQSKV 577 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~~l 577 (590)
|+.. +.... .. .... ...+..++++++|++.++....+.|.+||. +++.... +..+...+.++++.+ ++.++
T Consensus 172 ~~~~-g~~~~-~~-~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~ 244 (300)
T 2qc5_A 172 ITNT-GKLEE-YP-LPTN--AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEIW 244 (300)
T ss_dssp ECTT-CCEEE-EE-CSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEE
T ss_pred ECCC-CcEEE-ee-CCCC--CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCEE
Confidence 9883 32221 11 1111 245678999999988887777888999998 5554432 233456789999999 56666
Q ss_pred EEEeCCCcEEEcC
Q 007768 578 ATCGWDGLIKYWD 590 (590)
Q Consensus 578 ~s~g~Dg~I~iWD 590 (590)
++...++.|.+||
T Consensus 245 v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 245 FTEWGANQIGRIT 257 (300)
T ss_dssp EEETTTTEEEEEC
T ss_pred EeccCCCeEEEEC
Confidence 6665678888775
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=4.5e-10 Score=113.04 Aligned_cols=239 Identities=11% Similarity=0.146 Sum_probs=154.4
Q ss_pred eEEEeccCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEE
Q 007768 335 CMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 335 ~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 413 (590)
.+..+...........|+++|+ ++++...++.|..|+. ++...........+..+.+.+++ +++++...++.|.+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG---~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ---RLVHCEHGRRAITR 111 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS---CEEEEETTTTEEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC---CEEEEECCCCEEEE
Confidence 3444445556678899999998 5667777899999998 45533222333445556665543 45555555689999
Q ss_pred EeCCCCceEEEEcC----cCCceeEEEEeCCCCEEEE----EeC-------------CCcEEEEECCCCcEEEEeecCCC
Q 007768 414 WDMNTKEITQEYDQ----HLGAVNTITFVDSNRRFVT----SSD-------------DKSLRVWEFGIPVVIKYISEPHM 472 (590)
Q Consensus 414 wD~~t~~~~~~~~~----h~~~V~~i~~~p~~~~l~s----~s~-------------Dg~I~iwdl~~~~~~~~~~~~~~ 472 (590)
|+.. ++....... ....++.+.+.++|+++++ |.. .+.|+.||..++...... ..
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~ 187 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL 187 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cC
Confidence 9986 554332221 1235778999999988876 321 245777776555433322 23
Q ss_pred CceeEEEEcCCCCEEEEEEcC------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007768 473 HSMPSISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 473 ~~i~~i~~sp~g~~la~~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
.....++|+|+++.|+++... +.|.+|++.... +.....+... ..+....++++++|++. +++.+ .|.+|
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lw-v~~~~-gv~~~ 263 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGWLW-SSSGT-GVCVF 263 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSCEE-ECCSS-EEEEE
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCCEE-EecCC-cEEEE
Confidence 356789999999988887765 789999986543 2111111110 12233458899999954 44444 49999
Q ss_pred eCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 547 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 547 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
+. .++.+..+..+. .+.+++|.+ ++..|+.++.++..++
T Consensus 264 ~~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 264 DS-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEEE
T ss_pred CC-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEEE
Confidence 97 678888887666 478999997 5666777776766554
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=2.1e-09 Score=109.30 Aligned_cols=226 Identities=11% Similarity=0.006 Sum_probs=148.2
Q ss_pred CeEEEEEccCC-CEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE
Q 007768 345 AVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 423 (590)
Q Consensus 345 ~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~ 423 (590)
...+..|++++ .++++...++.|.+||..+++.. .+.....+..+.+.+++ .+++ ++. ..|++||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg---~l~v-~~~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS---KQLI-ASD-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT---EEEE-EET-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCC---eEEE-EEC-CCEEEEECCCCcEEE
Confidence 34678899974 45566667899999999887654 33444556666666653 3444 444 459999998887644
Q ss_pred EEcC----cCCceeEEEEeCCCCEEEEEeC------CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-c
Q 007768 424 EYDQ----HLGAVNTITFVDSNRRFVTSSD------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-L 492 (590)
Q Consensus 424 ~~~~----h~~~V~~i~~~p~~~~l~s~s~------Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~ 492 (590)
.... ....++++.++|+|+++++... .+.|..++ .+.. ..+.. .......++|+|+++.|+.+. .
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~-~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFA-DISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEE-EESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeC-CCcccCCeEEcCCCCEEEEEECC
Confidence 3321 1235889999999987766542 24555555 3333 22221 223467899999998776654 4
Q ss_pred CCeEEEEEcC--Cc-eeec--ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEE
Q 007768 493 DNQILIYSTR--ER-FQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 567 (590)
Q Consensus 493 dg~I~iwd~~--~~-~~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v 567 (590)
++.|.+|++. ++ .... ....+... ......++++++|.+.++...++.|.+||. +++.+..+..+...+.++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~--~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCC--CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 6899999985 43 2111 11111111 234567999999998887777789999998 678888888777789999
Q ss_pred EEc-CCCCCEEEEEeCC
Q 007768 568 EWH-PLEQSKVATCGWD 583 (590)
Q Consensus 568 ~~s-p~~~~~l~s~g~D 583 (590)
+|. ++...++++...+
T Consensus 277 af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 277 AFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEESTTSCEEEEEEBCT
T ss_pred EEecCCCCEEEEEecCC
Confidence 998 7434444555444
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.30 E-value=5.2e-11 Score=123.42 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=129.4
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCC----------eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG----------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~----------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
+++.|++++. ..+|++|+.++ +.+|++..-. .... ...+.. |+.|+| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 6899999999 88899999885 6669873111 1112 224666 999999 89999998 88999999
Q ss_pred ECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
|+.+............. +..+.+... -++++..||.|.+||+.++.... +...|+|++|+|.| ++.|..|
T Consensus 112 dv~sl~~~~~~~~~~~~-v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKP-VFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp ESSSTTCEEEEEECSSC-EEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EchhhhccCccceeecc-eeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 99876544433322222 233344333 28888999999999999887653 45689999999999 7889999
Q ss_pred CcEEEEECCCCcE--EEEeec--------CCCCceeEEEEcCCCCEEEEEE
Q 007768 451 KSLRVWEFGIPVV--IKYISE--------PHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 451 g~I~iwdl~~~~~--~~~~~~--------~~~~~i~~i~~sp~g~~la~~s 491 (590)
|++++|+...... ...+.. ++...|.+|.|.+++.+|++-.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999877765 445521 3578899999999999888744
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.29 E-value=3.8e-09 Score=109.31 Aligned_cols=255 Identities=10% Similarity=0.060 Sum_probs=172.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcce---
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--- 388 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~--- 388 (590)
+..|+.++.++.|..+|. .+++.+..+............. +..++.++.++.|..+|..+|+.+..+.......
T Consensus 103 ~~~v~v~~~~g~l~a~d~-~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNT-SDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 467888899999999998 5777776665443322222222 4578888899999999999999998876543321
Q ss_pred ---EEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCc----------e-eEEEEeCCCCEEEEEeCCCcEE
Q 007768 389 ---VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA----------V-NTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 389 ---~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~----------V-~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
..... ...++++..++.|..+|..+++.+..+...... + ....+ .+..+++++.++.|.
T Consensus 180 ~~~~~~~~-----~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 180 GESAPTTA-----FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLT 252 (376)
T ss_dssp CCCCCEEE-----TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEE
T ss_pred CCCCcEEE-----CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEE
Confidence 11111 145888888999999999999988776532110 1 11111 246788888899999
Q ss_pred EEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007768 455 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
.+|..+++.+..... .....+.. .+..|++++.++.|..+|..++................ ... .+..|
T Consensus 253 ~~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~----~~~--~~~~l 321 (376)
T 3q7m_A 253 ALDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTS----PVL--YNGNL 321 (376)
T ss_dssp EEETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCC----CEE--ETTEE
T ss_pred EEECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccC----CEE--ECCEE
Confidence 999998887755532 22334443 46778888899999999998876654333222221111 122 25688
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEEecCCCcEEE-EEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 535 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++++.+|.|+++|..+++.+..+......+.+ .... +..|+.++.+|.|..||
T Consensus 322 ~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~---~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA---DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE---TTEEEEEBTTSCEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE---CCEEEEEeCCCEEEEEe
Confidence 89999999999999999999888764443332 2222 34788889999999875
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=1.5e-10 Score=119.60 Aligned_cols=260 Identities=9% Similarity=-0.019 Sum_probs=173.6
Q ss_pred CcceEEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEecCCCCeeEEEeccC-------CCCeEEEE
Q 007768 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDIS 350 (590)
Q Consensus 288 p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~ 350 (590)
..+.+.++..-..+ .+.++|+ +++|+++. .++.|.+||+ .+.+.+.++..+ ......++
T Consensus 55 t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~-~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECT-TTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEEC-CCCCEEEEEECCCccccccCCCcceEE
Confidence 34667777654556 7999999 66666665 3788999999 688888887543 13456899
Q ss_pred EccCCCEEEEEec--CCeEEE--EECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-----Cce
Q 007768 351 FCNDGTKFLTASY--DKNIKY--WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEI 421 (590)
Q Consensus 351 fspdg~~l~s~s~--Dg~I~v--Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-----~~~ 421 (590)
|+|||++|+++.. +..|.+ +|+.+ +..+..+.. ..+.+.+ ...+++.+.|+.+.+.|+.+ ++.
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g--~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGA--AATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEE--TTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCC--CeEEEEEcCCCCEEEEECccccccCCeE
Confidence 9999999999875 367888 99987 455544332 1223333 24667777899999999987 433
Q ss_pred EEE----EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEeecCC---------CCceeEEEEcCCCCE
Q 007768 422 TQE----YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPH---------MHSMPSISLHPNTNW 486 (590)
Q Consensus 422 ~~~----~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~~~---------~~~i~~i~~sp~g~~ 486 (590)
... +.-...+. . .+++..++..+. +.|.+.|+.... .+..+.... ......++++|+++.
T Consensus 203 ~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 203 GAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred EEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 211 11112233 3 666777776666 999999986532 222221110 011223789999998
Q ss_pred EEEEEc-C--------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE-EEEEc-CCCcEEEEeCCCCeEEE
Q 007768 487 LAAQSL-D--------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF-VMSGD-GEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 487 la~~s~-d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~-l~sgs-~dg~I~iwd~~t~~~~~ 555 (590)
++++.. . +.+.++|+.+...+..+.. ......++|+|||++ +++.. .++.|.++|+.+++.+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEEC------CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 887643 2 3567999988766544432 223557999999984 55555 58999999999999999
Q ss_pred EEecCCCcEEEEEEcC
Q 007768 556 TLKCHEGVCIGCEWHP 571 (590)
Q Consensus 556 ~l~~h~~~V~~v~~sp 571 (590)
++.....+ ..+++.+
T Consensus 352 ~I~vg~~P-~~i~~~~ 366 (368)
T 1mda_H 352 SVELDKGP-ESLSVQN 366 (368)
T ss_dssp ECCCCSCC-CEEECCC
T ss_pred EEECCCCC-CEEEeec
Confidence 99876654 5666654
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=4.1e-09 Score=105.60 Aligned_cols=230 Identities=9% Similarity=0.067 Sum_probs=149.6
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 007768 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 374 (590)
Q Consensus 295 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t 374 (590)
+..+..-.-+..|+|+.+.++++...++.|..||. ..+.. ..+ .....+.+++++++|+++++ . ++.|.+||..+
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~-~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDS-FTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEET-TTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEEC-CCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 34455556788999976778888888999999998 34433 333 34578999999999995554 4 57899999998
Q ss_pred CcEEEEecCC-----CcceEEEEecCCCCCcEEEEEEC-----------CCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007768 375 GQVIRTFSTG-----KIPYVVKLNPDDDKQNILLAGMS-----------DKKIVQWDMNTKEITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 375 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lvsg~~-----------dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~ 438 (590)
++........ ..+..+.+.+++ .++++... .+.|+.++.. ++... +..+....+.++|+
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG---~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~s 157 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAG---RYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWS 157 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTS---CEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEEC
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCC---CEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEc
Confidence 8764433221 113345555433 45554432 2345555543 33322 33344567899999
Q ss_pred CCCCEEE-EEeCCCcEEEEECC--CCcEE--EEeec--CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 439 DSNRRFV-TSSDDKSLRVWEFG--IPVVI--KYISE--PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 439 p~~~~l~-s~s~Dg~I~iwdl~--~~~~~--~~~~~--~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
|+++.|+ +.+.++.|.+|++. ++... ..+.. ........++++++|++.++....+.|.+||..++..+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 9998765 45567889999974 33321 11211 123467889999999888887778899999997665443332
Q ss_pred cccCcccccceEEEEEc-CCCCEEEEEcC
Q 007768 512 RFAGHIVAGYACQVNFS-PDGRFVMSGDG 539 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~s-pdg~~l~sgs~ 539 (590)
. + ...+++++|. |+++.|++++.
T Consensus 238 ~---p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 L---P--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp C---S--SSBEEEEEEESGGGCEEEEEEB
T ss_pred C---C--CCCceEEEEeCCCCCEEEEEcC
Confidence 1 2 2457789998 88887765543
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=3.8e-10 Score=126.53 Aligned_cols=270 Identities=14% Similarity=0.099 Sum_probs=183.6
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCC-----------eEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-----------VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-----------V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|++++.++.|..+|. .+++.+..+...... ...+++ .+..|++++.|+.|..+|..+|+.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDT-RTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEET-TTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 567778888899999999 688888877643210 122333 466888889999999999999999998
Q ss_pred ecCC-C-----cceEEEEecCCCCCcEEEEEEC------CCeEEEEeCCCCceEEEEcCcCCc-----------------
Q 007768 381 FSTG-K-----IPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGA----------------- 431 (590)
Q Consensus 381 ~~~~-~-----~~~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~t~~~~~~~~~h~~~----------------- 431 (590)
+... . .....-... + ..+++++. ++.|+.||..+|+.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~---~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF---K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE---T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred ecCCcCcCcCcccccCcEEE---C-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 8765 2 111100111 1 34555553 699999999999998887542211
Q ss_pred ---------------eeEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEeecCCC-----
Q 007768 432 ---------------VNTITFVDSNRRFVTSSDDK-------------------SLRVWEFGIPVVIKYISEPHM----- 472 (590)
Q Consensus 432 ---------------V~~i~~~p~~~~l~s~s~Dg-------------------~I~iwdl~~~~~~~~~~~~~~----- 472 (590)
...+++.+++..++.++.++ +|..+|..+++.+-.+...+.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 13578889888988887664 599999999988776654221
Q ss_pred ---CceeEEEEcCCC---CEEEEEEcCCeEEEEEcCCceeeccccccc----------Cccc------------------
Q 007768 473 ---HSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFA----------GHIV------------------ 518 (590)
Q Consensus 473 ---~~i~~i~~sp~g---~~la~~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~------------------ 518 (590)
.....+....+| ..|++++.+|.|+++|..++..+....... +...
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 122223333467 688999999999999998887654332110 0000
Q ss_pred --ccceEEEEEcCCCCEEEEEcC-------------------------------------------CCcEEEEeCCCCeE
Q 007768 519 --AGYACQVNFSPDGRFVMSGDG-------------------------------------------EGKCWFWDWKSCKV 553 (590)
Q Consensus 519 --~~~v~~v~~spdg~~l~sgs~-------------------------------------------dg~I~iwd~~t~~~ 553 (590)
...-..++|+|++.++++... .|.|..||+.+++.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 000014688999888877543 27899999999999
Q ss_pred EEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 554 FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 554 ~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+..+... .++.+..+.. .+.+++.++.||.|++||
T Consensus 470 ~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 470 AWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred EeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEE
Confidence 9988743 3344444555 455888889999999986
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=2.2e-09 Score=107.93 Aligned_cols=238 Identities=11% Similarity=0.123 Sum_probs=157.0
Q ss_pred ceEEEecCCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEE
Q 007768 290 RLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 290 ~~i~~l~gH~~~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
..+..+..+........|+|+ ++ +++++..++.|..|+. .+. ...+..+...+..++++++|+++++...++.|.
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~-g~~l~~~d~~~~~i~~~~~--~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEA-QRTLVWSDLVGRRVLGWRE--DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGG-GTEEEEEETTTTEEEEEET--TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CceEEEecCCcCccCCeEeCC-CCEEEEEECCCCEEEEEeC--CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 344555566677889999999 55 7788888899999987 333 445556677899999999999666655568899
Q ss_pred EEECCCCcEEEEecC-----CCcceEEEEecCCCCCcEEEE----EEC-------------CCeEEEEeCCCCceEEEEc
Q 007768 369 YWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLA----GMS-------------DKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 369 vWd~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lvs----g~~-------------dg~I~iwD~~t~~~~~~~~ 426 (590)
+|+.. ++....... ...+..+.+.+++ .++++ |.. .+.|+.||..+++.....
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG---~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG---AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTS---CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCC---CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 99986 554332211 1123345666543 45554 332 357888888777655443
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCC------CcEEEEECCCCcE--EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEE
Q 007768 427 QHLGAVNTITFVDSNRRFVTSSDD------KSLRVWEFGIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~D------g~I~iwdl~~~~~--~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~i 498 (590)
.....+.++|+|+++.|+.+... +.|++|++..... ...+..........++++++|++.++ +. +.|.+
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~-~gv~~ 262 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SG-TGVCV 262 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CS-SEEEE
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cC-CcEEE
Confidence 44567889999999988777665 6899999875431 11222222344567899999995444 44 45999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007768 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
|+... ..+..+. .. ..+..++|+++++.|+.++.++ |+.++
T Consensus 263 ~~~~g-~~~~~~~---~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 263 FDSDG-QLLGHIP---TP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECTTS-CEEEEEE---CS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ECCCC-CEEEEEE---CC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 99853 3332222 11 1355789999999888887764 44333
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.24 E-value=3.7e-09 Score=109.41 Aligned_cols=257 Identities=9% Similarity=0.046 Sum_probs=169.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccC---------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH---------SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h---------~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
+..|++++.++.|..+|. .+++.+..+... ...+.+. ...++..++.++.++.|..+|..+|+.+..+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNA-DDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEc-cCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 567888888999999998 577777665442 1223222 22245678888899999999999999988776
Q ss_pred CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCce-----eEEEEeCCCCEEEEEeCCCcEEEEE
Q 007768 383 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V-----~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
............ ...+++++.++.|+.+|..+++.+..+....... ...... +..+++++.++.|..+|
T Consensus 131 ~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 131 VAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp CSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred CCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 553322111111 1468888999999999999999888775432211 222232 45788888899999999
Q ss_pred CCCCcEEEEeecCCCCc---------e-eEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007768 458 FGIPVVIKYISEPHMHS---------M-PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~---------i-~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
..++..+.......... + ....+ .+..+++++.++.|..+|..++..+..... . ....+..
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~------~~~~~~~ 275 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL-G------SVNDFIV 275 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC-C------CEEEEEE
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC-C------CCCCceE
Confidence 99888776654321100 0 01111 256778888899999999988765533221 1 1122333
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec-CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++..|+.++.+|.|..+|..+++.+..... ....+...... +..|+.++.+|.|.++|
T Consensus 276 --~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 276 --DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp --ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEE
T ss_pred --ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEE
Confidence 466888888899999999999999887763 22222333332 24688888888888775
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=6.9e-10 Score=124.63 Aligned_cols=273 Identities=14% Similarity=0.095 Sum_probs=180.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCC----------e-EEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA----------V-RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~----------V-~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|++++.++.|..+|. .+++.+..+..+... + ..+++ .+..|++++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDA-RDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEC-CCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 567888888999999999 688888877543221 1 11222 356788899999999999999999988
Q ss_pred ecCC-Ccc--eEEEEecCCCCCcEEEEEE------CCCeEEEEeCCCCceEEEEcCcC----------------------
Q 007768 381 FSTG-KIP--YVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHL---------------------- 429 (590)
Q Consensus 381 ~~~~-~~~--~~~~~~~~~~~~~~lvsg~------~dg~I~iwD~~t~~~~~~~~~h~---------------------- 429 (590)
+... ... ..+...|.-.+ ..+++++ .++.|+.||.++|+++..+....
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 7654 111 00000110001 2455554 36899999999999988775210
Q ss_pred ---------CceeEEEEeCCCCEEEEEeCCCc-------------------EEEEECCCCcEEEEeecC-CC-------C
Q 007768 430 ---------GAVNTITFVDSNRRFVTSSDDKS-------------------LRVWEFGIPVVIKYISEP-HM-------H 473 (590)
Q Consensus 430 ---------~~V~~i~~~p~~~~l~s~s~Dg~-------------------I~iwdl~~~~~~~~~~~~-~~-------~ 473 (590)
.....+++.|+..+++.++.++. |..||..+++.+-.+... +. .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 01135788898889999887763 999999999888766542 21 1
Q ss_pred ceeEEEEcCCCC---EEEEEEcCCeEEEEEcCCceeeccccccc-------------------------Cc---------
Q 007768 474 SMPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA-------------------------GH--------- 516 (590)
Q Consensus 474 ~i~~i~~sp~g~---~la~~s~dg~I~iwd~~~~~~~~~~~~~~-------------------------~~--------- 516 (590)
.+....+..+|+ .++.++.+|.|+++|..++..+....... ..
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 122222233554 78889999999999998887652211100 00
Q ss_pred ccccceEEEEEcCCCCEEEEEcC---------------------------------------------CCcEEEEeCCCC
Q 007768 517 IVAGYACQVNFSPDGRFVMSGDG---------------------------------------------EGKCWFWDWKSC 551 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~---------------------------------------------dg~I~iwd~~t~ 551 (590)
.....-..++|+|+..+|++... +|.|..||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 00000112688998888877522 378999999999
Q ss_pred eEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 552 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+.+..+..+.. +....+.. .+.+|+.++.||.|+.||
T Consensus 466 ~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 466 QAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp EEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred CeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEE
Confidence 99999886543 23334444 456899999999999997
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=1.4e-10 Score=120.26 Aligned_cols=174 Identities=10% Similarity=0.058 Sum_probs=129.5
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCc-----------EEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEE
Q 007768 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 413 (590)
.++.+++++...+|++|+.+ .+.+|++...+ ......... +..+.| + +.+|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d---~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H---GDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E---TTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C---CCEEEEE-cCCcEEE
Confidence 68999999999999999987 45569865333 112333444 666666 2 2577777 8899999
Q ss_pred EeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC
Q 007768 414 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 414 wD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d 493 (590)
||+++.........|...+.++.+.+. .+++++.||.|.+||+....... ....|.+++|+|+| ++++..|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcC
Confidence 999987766666677788888887754 38889999999999998777643 33579999999999 7889999
Q ss_pred CeEEEEEcCCcee--eccc---cccc---CcccccceEEEEEcCCCCEEEEE
Q 007768 494 NQILIYSTRERFQ--LNKK---KRFA---GHIVAGYACQVNFSPDGRFVMSG 537 (590)
Q Consensus 494 g~I~iwd~~~~~~--~~~~---~~~~---~~~~~~~v~~v~~spdg~~l~sg 537 (590)
|.|++|+...... ...+ ..+. +| ...|.++.|.+++.++++-
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~--~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVE--EYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTT--TSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCC--CeeEEEEEEecCCeEEEEE
Confidence 9999998876542 1111 1111 12 4678899999999999874
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=3e-09 Score=119.51 Aligned_cols=259 Identities=14% Similarity=0.157 Sum_probs=168.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccC--CCCeEEEEEcc---CCCEEEEEe------cCCeEEEEECCCCcEEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH--SKAVRDISFCN---DGTKFLTAS------YDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h--~~~V~~l~fsp---dg~~l~s~s------~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|++++.|+.|..+|. .+++.+..+... ......+..+| ++ .++.++ .+|.|..||..+|+.+..
T Consensus 121 ~g~v~v~~~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDA-KTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEccCCEEEEEEC-CCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 567888999999999999 678877766542 11111111122 44 444443 368999999999999988
Q ss_pred ecCCC--cc------------------------------eEEEEecCCCCCcEEEEEECCCe------------------
Q 007768 381 FSTGK--IP------------------------------YVVKLNPDDDKQNILLAGMSDKK------------------ 410 (590)
Q Consensus 381 ~~~~~--~~------------------------------~~~~~~~~~~~~~~lvsg~~dg~------------------ 410 (590)
+.... .. ....+.+. ..+++++..++.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~---~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE---LNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC---CCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 75310 00 12334433 257888877763
Q ss_pred -EEEEeCCCCceEEEEcC--cC-------CceeEEEEeCCCC---EEEEEeCCCcEEEEECCCCcEEEEeecCCC-----
Q 007768 411 -IVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHM----- 472 (590)
Q Consensus 411 -I~iwD~~t~~~~~~~~~--h~-------~~V~~i~~~p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~----- 472 (590)
|..||..+|+.+..+.. |. .++.......+++ .++.++.+|.|+++|..+++.+........
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence 99999999999988754 21 1222222223554 788999999999999999988744322110
Q ss_pred ---------------------------------CceeEEEEcCCCCEEEEEEc---------------------------
Q 007768 473 ---------------------------------HSMPSISLHPNTNWLAAQSL--------------------------- 492 (590)
Q Consensus 473 ---------------------------------~~i~~i~~sp~g~~la~~s~--------------------------- 492 (590)
.....++++|+..+|++...
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 01123788998888887643
Q ss_pred ------------------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEE
Q 007768 493 ------------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 493 ------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
+|.|..||+.+++........ .. ...-.++..+.+|++|+.||.|++||.++|+.+
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~-----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TI-----FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SS-----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CC-----ccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 367899999888765443321 11 111245557889999999999999999999999
Q ss_pred EEEecCCCcE-EEEEEcCCCCCEEEEEe
Q 007768 555 RTLKCHEGVC-IGCEWHPLEQSKVATCG 581 (590)
Q Consensus 555 ~~l~~h~~~V-~~v~~sp~~~~~l~s~g 581 (590)
..++...+.+ .-+.|..++..++++.+
T Consensus 510 w~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 510 WEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 9998654322 33566664555555543
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.21 E-value=9.7e-10 Score=113.47 Aligned_cols=248 Identities=9% Similarity=-0.098 Sum_probs=166.0
Q ss_pred cEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEe----------cCCeEEEEECCCCcEEEEecCC--------
Q 007768 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTETGQVIRTFSTG-------- 384 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s----------~Dg~I~vWd~~t~~~~~~~~~~-------- 384 (590)
.|.+.|. .+.+.+.++.....+ .+.|+||+++++++. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~-~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEET-TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEEC-CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 7889999 688888888755555 799999999999886 3689999999999999998654
Q ss_pred CcceEEEEecCCCCCcEEEEEE-C-CCeEEE--EeCCCCceEEEEcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECC
Q 007768 385 KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQ--WDMNTKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~i--wD~~t~~~~~~~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~ 459 (590)
..+..+.+++++. +++++. . ...|.+ +|+.+ +..+... +. +.+.|++ ..+++.+.|+.+.+.++.
T Consensus 124 ~~P~~ia~SpDGk---~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 124 PRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCcceEEEcCCCC---EEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 4577888888764 355554 3 467888 99987 4444321 11 1223433 456677788888888887
Q ss_pred C-----CcEEEE---eecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce--eecccccc------cCcccccceE
Q 007768 460 I-----PVVIKY---ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--QLNKKKRF------AGHIVAGYAC 523 (590)
Q Consensus 460 ~-----~~~~~~---~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~--~~~~~~~~------~~~~~~~~v~ 523 (590)
. ++.... .......+. . .+++..++..+. +.|.+.|+.... ........ .+.. .....
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~-p~g~~ 267 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR-SAGFQ 267 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE-ECSSS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc-cCcce
Confidence 6 221110 000112222 3 666666666666 999999986432 11111110 0100 11111
Q ss_pred EEEEcCCCCEEEEEcC---------CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEe-CCCcEEEcC
Q 007768 524 QVNFSPDGRFVMSGDG---------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~---------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~Dg~I~iWD 590 (590)
.++|+|+++.++++.. .+.+.++|+.+.+.+..+.... ...+++|+|++..+++++. .++.|.++|
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 2689999998887543 2356799999999999887554 4789999996556788888 599999987
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=1.9e-09 Score=121.41 Aligned_cols=241 Identities=15% Similarity=0.193 Sum_probs=152.6
Q ss_pred CCCCCeeEEEEcCCCCCEEEE-Ee----CCCcEEEEecCCCCeeEEE-eccCCCCeEEEEEccCCCEEEEEecCC-----
Q 007768 297 GHTKGVSAIRFFPKYGHLILS-AG----MDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDK----- 365 (590)
Q Consensus 297 gH~~~V~~l~~sp~~g~~L~s-gs----~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fspdg~~l~s~s~Dg----- 365 (590)
+|...|..++|||+ |++||- .+ ....|++||+ .+++.+.. +.. .....++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl-~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDV-ESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEET-TTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEEC-CCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccc
Confidence 46667999999999 777663 22 2357999999 56665443 211 113578999 999999988874
Q ss_pred --------eEEEEECCCCcE--EEEecCCC--c--ceEEEEecCCCCCcEEEEEEC---CCeEEEEeCCCCc-eEEEEcC
Q 007768 366 --------NIKYWDTETGQV--IRTFSTGK--I--PYVVKLNPDDDKQNILLAGMS---DKKIVQWDMNTKE-ITQEYDQ 427 (590)
Q Consensus 366 --------~I~vWd~~t~~~--~~~~~~~~--~--~~~~~~~~~~~~~~~lvsg~~---dg~I~iwD~~t~~-~~~~~~~ 427 (590)
.|++|++.++.. ...+.... . ...+.+++++ ..++++... ...|+++|+.++. ....+..
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~ 278 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTVQG 278 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence 399999987653 33333322 2 2344555543 345555443 3589999998763 3445555
Q ss_pred cCCceeEEEEeCCCCEEEEEe-CC---CcEEEEECCCCcE--EEEeecCCCCceeEEEEcCCCCEEEEEEcCC---eEEE
Q 007768 428 HLGAVNTITFVDSNRRFVTSS-DD---KSLRVWEFGIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILI 498 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s-~D---g~I~iwdl~~~~~--~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg---~I~i 498 (590)
+....... |++++..|+..+ .+ +.|.++++..+.. ...+. ++...+. .|++++++|+....++ .|++
T Consensus 279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 66655555 566666655444 33 5799999987643 23333 2433443 8889999888776654 6888
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC----CcEEEEeCCCCeE
Q 007768 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE----GKCWFWDWKSCKV 553 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d----g~I~iwd~~t~~~ 553 (590)
|++...... .+ .+.+ .+.+..+.+++++..|+....+ +.|+.||+.+++.
T Consensus 355 ~d~~g~~~~-~l-~~p~---~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 355 FDYEGKRVR-EV-ALPG---LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ECTTSCEEE-EE-CCSS---SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EECCCCeeE-Ee-ecCC---CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 988754321 11 1111 2446667788888877655444 7899999987754
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=5e-08 Score=99.08 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=144.3
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
.-..+.+|+|+++.++++...++.|.+|+. ..++. ..+. ....+.+++|+++|++++++ . ..|.+||..+++...
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~-~~~~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHL-ASGRK-TVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEET-TTTEE-EEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEEC-CCCcE-EEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 345778999986677788778899999998 34443 3332 35679999999999877754 3 459999998887654
Q ss_pred EecCC-----CcceEEEEecCCCCCcEEEEEEC------CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE-
Q 007768 380 TFSTG-----KIPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS- 447 (590)
Q Consensus 380 ~~~~~-----~~~~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~- 447 (590)
..... ..+..+.+.+++ .++++... .+.|+.++ +++... +..+....+.++|+|+++.|+.+
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G---~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSG---ALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTS---CEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEE
T ss_pred EeeCCCCCCCCCCCCEEECCCC---CEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEE
Confidence 33221 123344555433 45554432 35677777 454433 32344567899999999876555
Q ss_pred eCCCcEEEEECC--CC-c-----EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007768 448 SDDKSLRVWEFG--IP-V-----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 448 s~Dg~I~iwdl~--~~-~-----~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
+.++.|.+|++. ++ . .+..+ .........++++++|.++++...++.|.+|+.. +..+.. +..+ .
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~---i~~~--~ 270 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIAR---YEVP--G 270 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEE---EECS--C
T ss_pred CCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEE---EECC--C
Confidence 557899999985 44 2 11121 1233456789999999887777677899999984 333322 2222 2
Q ss_pred cceEEEEEc-CCCCEEEEEcC
Q 007768 520 GYACQVNFS-PDGRFVMSGDG 539 (590)
Q Consensus 520 ~~v~~v~~s-pdg~~l~sgs~ 539 (590)
..+.+++|+ ++++.|++++.
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEB
T ss_pred CCcEEEEEecCCCCEEEEEec
Confidence 357789998 88887755543
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=9.8e-09 Score=115.03 Aligned_cols=257 Identities=12% Similarity=0.105 Sum_probs=170.6
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccC-C----CCeEEEEEccCCCEEEEEec------CCeEEEEECCCCcEEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-S----KAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~----~~V~~l~fspdg~~l~s~s~------Dg~I~vWd~~t~~~~~~ 380 (590)
+..|+.++.|+.|..+|. .+++.+..+..+ . ..+.+--.. .+..++.++. ++.|..||..+|+.+..
T Consensus 128 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDA-ATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 568888899999999999 678888777654 1 112211111 2345555543 69999999999999988
Q ss_pred ecCCCcc---------------------------------eEEEEecCCCCCcEEEEEECCC------------------
Q 007768 381 FSTGKIP---------------------------------YVVKLNPDDDKQNILLAGMSDK------------------ 409 (590)
Q Consensus 381 ~~~~~~~---------------------------------~~~~~~~~~~~~~~lvsg~~dg------------------ 409 (590)
+...... ..+.+.+. ..+++++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~---~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE---LNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC---CCEEEEECCCCccccCCCCCccCCCCeee
Confidence 7653211 12334443 25677776654
Q ss_pred -eEEEEeCCCCceEEEEcC--cC-------CceeEEEEeCCC---CEEEEEeCCCcEEEEECCCCcEEEEeecCCCC---
Q 007768 410 -KIVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDSN---RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--- 473 (590)
Q Consensus 410 -~I~iwD~~t~~~~~~~~~--h~-------~~V~~i~~~p~~---~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~--- 473 (590)
.|..+|..+++.+..+.. |. .....+....+| ..++.++.+|.|+++|..+++.+..+......
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 599999999999888753 21 112223333466 67899999999999999999887665422110
Q ss_pred -------ce------------------------eEEEEcCCCCEEEEEEcC-----------------------------
Q 007768 474 -------SM------------------------PSISLHPNTNWLAAQSLD----------------------------- 493 (590)
Q Consensus 474 -------~i------------------------~~i~~sp~g~~la~~s~d----------------------------- 493 (590)
++ ..++++|++.++++...+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 01 257889998888876542
Q ss_pred --------------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec
Q 007768 494 --------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 494 --------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 559 (590)
+.|..||+.+++.+..... . ..+....++.++.+++.++.+|.|++||..+++.+..+..
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~-----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-V-----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-S-----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCC-C-----CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 6799999988776544332 1 1122234566788999999999999999999999999985
Q ss_pred CCC-cEEEEEEcCCCCCEEEE
Q 007768 560 HEG-VCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 560 h~~-~V~~v~~sp~~~~~l~s 579 (590)
..+ ...-+.|..++..+++.
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEE
T ss_pred CCCcccCCEEEEeCCEEEEEE
Confidence 543 22334555534444444
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.15 E-value=1.7e-09 Score=121.79 Aligned_cols=238 Identities=10% Similarity=0.056 Sum_probs=148.0
Q ss_pred cCCCCeEEEEEccCCCEEEEEe-----cCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC-------
Q 007768 341 GHSKAVRDISFCNDGTKFLTAS-----YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD------- 408 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s-----~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d------- 408 (590)
+|...+..++|||||++|+.+. ....|++||+.+++.+...........+.|+ ++ ..|+.+..+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg---~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GN---EGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TT---TEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CC---CEEEEEEecCcccccc
Confidence 3555788999999999888432 2357999999999876542111112345566 54 345555555
Q ss_pred ------CeEEEEeCCCCce--EEEE--cC-cCCceeEEEEeCCCCEEEEEeC----CCcEEEEECCCCc-EEEEeecCCC
Q 007768 409 ------KKIVQWDMNTKEI--TQEY--DQ-HLGAVNTITFVDSNRRFVTSSD----DKSLRVWEFGIPV-VIKYISEPHM 472 (590)
Q Consensus 409 ------g~I~iwD~~t~~~--~~~~--~~-h~~~V~~i~~~p~~~~l~s~s~----Dg~I~iwdl~~~~-~~~~~~~~~~ 472 (590)
..|++|++.++.. ...+ .. |...+.++.|+|++++|+.... ...|+++|+..+. ....+.. +.
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~ 280 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DL 280 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CC
Confidence 3499999987642 2333 33 4456788999999998865442 3589999997763 3334433 33
Q ss_pred CceeEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-CC--cEEE
Q 007768 473 HSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EG--KCWF 545 (590)
Q Consensus 473 ~~i~~i~~sp~g~~la~~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg--~I~i 545 (590)
...... +++++..|+..+.. +.|..+++.+.... ....+..+. ..+. .|++++++|+.... +| .|++
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCC--SSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCC--CCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 334443 66677666655542 57999998765321 112233332 1222 88999998877654 43 6899
Q ss_pred EeCCCCeEEEEEec-CCCcEEEEEEcCCCCCEEEEEeCC---CcEEEcC
Q 007768 546 WDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWD---GLIKYWD 590 (590)
Q Consensus 546 wd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~D---g~I~iWD 590 (590)
|++..+. ...+.. +.+.+..+.+++++..++++.+.. +.|..||
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 9987544 444543 445677888888555555554432 6677765
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.08 E-value=4.7e-08 Score=101.79 Aligned_cols=226 Identities=14% Similarity=0.150 Sum_probs=148.2
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCC---CeeEEEec------c-CCCCeEEEEEccCCCEEEEEecC------CeEEEEEC
Q 007768 309 PKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYM------G-HSKAVRDISFCNDGTKFLTASYD------KNIKYWDT 372 (590)
Q Consensus 309 p~~g~~L~sgs~Dg~I~iWd~~~~---~~~~~~~~------~-h~~~V~~l~fspdg~~l~s~s~D------g~I~vWd~ 372 (590)
++...++++|..+++|.|+|+... .+..+++. . -...-..+..+|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 663455566777899999998322 25556662 1 11245667888999 77776655 78999999
Q ss_pred CCCcEEEEecCCCc----ceEEEEecCCCCCcEEEEEE-------------------CCCeEEEEeCCCCceEEEEcCc-
Q 007768 373 ETGQVIRTFSTGKI----PYVVKLNPDDDKQNILLAGM-------------------SDKKIVQWDMNTKEITQEYDQH- 428 (590)
Q Consensus 373 ~t~~~~~~~~~~~~----~~~~~~~~~~~~~~~lvsg~-------------------~dg~I~iwD~~t~~~~~~~~~h- 428 (590)
.+++++.++..+.. .+-+.+++.. +.+++.. ...+|.+||+.+++.++++..-
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~---~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPN---EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTT---TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred CCCeEEEEEccCCCCccccceEEECCCC---CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 99999999875422 3346667654 4566653 3789999999999888887642
Q ss_pred C-CceeEEEE--eCCCCEEEEEe------CCCcEEEEECCCCcE--EEEeecCC-----------------CCceeEEEE
Q 007768 429 L-GAVNTITF--VDSNRRFVTSS------DDKSLRVWEFGIPVV--IKYISEPH-----------------MHSMPSISL 480 (590)
Q Consensus 429 ~-~~V~~i~~--~p~~~~l~s~s------~Dg~I~iwdl~~~~~--~~~~~~~~-----------------~~~i~~i~~ 480 (590)
. .....|.| +|+++++++++ .+++|.+|....+.. ...+..+. ......|.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 1 23445656 99999887776 566888776654321 11110010 234678999
Q ss_pred cCCCCEEEEEEc-CCeEEEEEcCCceeecccccc-cC-----------cccccceEEEEEcCCCCEEEEEc
Q 007768 481 HPNTNWLAAQSL-DNQILIYSTRERFQLNKKKRF-AG-----------HIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 481 sp~g~~la~~s~-dg~I~iwd~~~~~~~~~~~~~-~~-----------~~~~~~v~~v~~spdg~~l~sgs 538 (590)
++++++|+++.. .+.|.+||+............ .+ ....+.-..++++|||++|+++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988876 588999998633211111111 11 11111245699999999999988
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=6.6e-11 Score=122.87 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=115.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCc-e
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-V 432 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~-V 432 (590)
++..+++++.||.|..||..+|+.+..+.. .......+.. .+.++++++.|+.|+.||..+++.+..+..+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~---~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV---EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC--------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc---CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999999988876 3332222222 2346777789999999999999887776543211 1
Q ss_pred e-EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 433 N-TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 433 ~-~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
. +..+. .+..+++++.++.|+.||..+++.+..+.... ...++|++..+++++.++.|+.||..++..+....
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 1 11111 34577888889999999999888766553321 23456788899999999999999998876543322
Q ss_pred cccCcccccceEEEEEcCCC---CEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEE-EEEcC
Q 007768 512 RFAGHIVAGYACQVNFSPDG---RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG-CEWHP 571 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg---~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~-v~~sp 571 (590)
. .. .....++.+. ..+++++.+|.|+.||..+|+.+..+... .++.. ..+++
T Consensus 158 ~-~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~ 213 (369)
T 2hz6_A 158 Y-FD------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQR 213 (369)
T ss_dssp E-EE------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTT
T ss_pred c-cc------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecC
Confidence 1 10 0112333332 46777888999999999999999888744 34443 34444
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=1.3e-07 Score=98.48 Aligned_cols=223 Identities=14% Similarity=0.162 Sum_probs=149.1
Q ss_pred cCCCEEEE-EecCCeEEEEECCCC----cEEEEec-------CC-CcceEEEEecCCCCCcEEEEEECC------CeEEE
Q 007768 353 NDGTKFLT-ASYDKNIKYWDTETG----QVIRTFS-------TG-KIPYVVKLNPDDDKQNILLAGMSD------KKIVQ 413 (590)
Q Consensus 353 pdg~~l~s-~s~Dg~I~vWd~~t~----~~~~~~~-------~~-~~~~~~~~~~~~~~~~~lvsg~~d------g~I~i 413 (590)
.+.++|+. +..++.|.|+|+.+. +.+..+. .+ ..+..+.+.+++ +++++..+ +.|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG----i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA----IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC----EEEEEEEETTSCSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe----EEEEcCCCcCCCCCCeEEE
Confidence 67776665 556789999999766 6666662 12 234445555543 66666665 78999
Q ss_pred EeCCCCceEEEEcCcCC---ceeEEEEeCCCCEEEEEe-------------------CCCcEEEEECCCCcEEEEeecCC
Q 007768 414 WDMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSS-------------------DDKSLRVWEFGIPVVIKYISEPH 471 (590)
Q Consensus 414 wD~~t~~~~~~~~~h~~---~V~~i~~~p~~~~l~s~s-------------------~Dg~I~iwdl~~~~~~~~~~~~~ 471 (590)
+|..+++++..+..... --..+.|+|+++.+++.. ...+|.+||+.+.+.+..+..+.
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 99999999998863322 234588899999888885 36899999999888777776542
Q ss_pred C-CceeEEEE--cCCCCEEEEEEc------CCeEEEEEcCCceeeccccc-------ccCcc---------cccceEEEE
Q 007768 472 M-HSMPSISL--HPNTNWLAAQSL------DNQILIYSTRERFQLNKKKR-------FAGHI---------VAGYACQVN 526 (590)
Q Consensus 472 ~-~~i~~i~~--sp~g~~la~~s~------dg~I~iwd~~~~~~~~~~~~-------~~~~~---------~~~~v~~v~ 526 (590)
. .....+.| +|+++++++++. +++|.+|....+. ...... ..+.. .......|.
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 2 23344555 999999888774 5688776554321 111110 00000 013456799
Q ss_pred EcCCCCEEEEEcC-CCcEEEEeCC---CCeEEEEEecCCC--------------cEEEEEEcCCCCCEEEEEe
Q 007768 527 FSPDGRFVMSGDG-EGKCWFWDWK---SCKVFRTLKCHEG--------------VCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 527 ~spdg~~l~sgs~-dg~I~iwd~~---t~~~~~~l~~h~~--------------~V~~v~~sp~~~~~l~s~g 581 (590)
+|+||++|+++.. .+.|.+||+. +.+++..+..... .-..+.++| ++++|+.+.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 9999999988774 6899999985 3466666654311 247899999 566666655
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.03 E-value=1.2e-08 Score=102.85 Aligned_cols=293 Identities=9% Similarity=0.021 Sum_probs=177.5
Q ss_pred ccccccceeecCCcc-ccccCCCccCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc
Q 007768 263 ETDYQGRSWIAPPKD-AKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG 341 (590)
Q Consensus 263 ~~d~~~r~w~~~~~~-~~~~~~~~~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~ 341 (590)
..|..++.|+..... +...+ ...+.+..+..+...+.++...++ + .|+.++.+ |..+|. .++.+..+..
T Consensus 26 ~~d~~g~l~v~t~~~~l~~~d----~~g~~~~~~~~~~~~~~~~~~~~~-g-~l~v~t~~--l~~~d~--~g~~~~~~~~ 95 (330)
T 3hxj_A 26 ILAKNGTIYLGSSNKNLYAIN----TDGSVKWFFKSGEIIECRPSIGKD-G-TIYFGSDK--VYAINP--DGTEKWRFDT 95 (330)
T ss_dssp EECTTSCEECSSTTTTTEEEC----TTSCEEESSCGGGEEEECCEETTT-T-EECCSSCE--EEEECC--CGGGGGGSCC
T ss_pred eEccCCeEEEEcCCCEEEEEC----CCCcEEEEEecCCCcccceEEecC-C-cEEEecCc--EEEECC--CCcEEEEEEC
Confidence 345566777654322 11111 112233333333445567777665 4 45555544 777875 4444333332
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc-eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc
Q 007768 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 420 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~ 420 (590)
.........+. +..|+.++.++.|..+|.. ++....+...... ........ ..+++++.++.|..||.. ++
T Consensus 96 ~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~----g~l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 96 KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED----GTIYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp -----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT----SCEEEECTTSEEEEECTT-SC
T ss_pred CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC----CEEEEEcCCCEEEEECCC-CC
Confidence 22223333333 5567888889999999998 7777666543322 22222222 237778888999999999 88
Q ss_pred eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEE
Q 007768 421 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 421 ~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd 500 (590)
.+..+......+.++.+.+++..++ ++ +.|..+| .++........ ....+.++...+++. |.+++.++.|..++
T Consensus 168 ~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAIN 241 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEEC
Confidence 7777766666778888877776554 44 7899999 56555544432 345678888888775 55567788888887
Q ss_pred cCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEE
Q 007768 501 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
... ..+...... . ..+..+.+.+++ .|+.++.+|.|..+|. +++.+..+......+.++...+ ++ .|..+
T Consensus 242 ~~g-~~~~~~~~~-~----~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g-~l~~g 311 (330)
T 3hxj_A 242 PDG-TEKWRFKTG-K----RIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE-NG-TIYFG 311 (330)
T ss_dssp TTS-CEEEEEECS-S----CCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECT-TC-CEEEE
T ss_pred CCC-CEeEEeeCC-C----CccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcC-CC-EEEEE
Confidence 533 333222111 1 112224455555 5667788889999995 7888877776666677777766 44 46778
Q ss_pred eCCCcEEEc
Q 007768 581 GWDGLIKYW 589 (590)
Q Consensus 581 g~Dg~I~iW 589 (590)
+.+|.|++.
T Consensus 312 t~~G~~~~~ 320 (330)
T 3hxj_A 312 TRNGKFYAL 320 (330)
T ss_dssp CTTSCEEEE
T ss_pred cCCCeEEEE
Confidence 889998763
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=7.9e-11 Score=122.27 Aligned_cols=223 Identities=10% Similarity=0.067 Sum_probs=123.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
+..|++++.||.|+.||. .+++.+..+.. ..+.+..+..++..+++++.||.|+.||..+|+.+..+........ .
T Consensus 9 ~~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-Q 84 (369)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH-T
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc-c
Confidence 678999999999999999 68888888776 5566666667888888888999999999999988766543211000 0
Q ss_pred EecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 007768 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 471 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~ 471 (590)
..|.-.....+++|+.++.|+.||..+|+.+..+..+. .+.++|++..+++++.++.|+.||..+++.+..+...
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~- 159 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF- 159 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE-
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-
Confidence 11111012457888889999999999999888876553 2345667889999999999999999887654433211
Q ss_pred CCceeEEEEcCCC---CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE----EEEcCCCcEE
Q 007768 472 MHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV----MSGDGEGKCW 544 (590)
Q Consensus 472 ~~~i~~i~~sp~g---~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l----~sgs~dg~I~ 544 (590)
.....++..+. ..+++++.+|.|+.||..++..+.... +.. ..+....++++|... +.+ ++.++
T Consensus 160 --~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~----pv~~~~~~~~dg~~~v~~~~~~--~~~l~ 230 (369)
T 2hz6_A 160 --DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YAS----PVVAFYVWQREGLRKVMHINVA--VETLR 230 (369)
T ss_dssp --EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSS----CEEEEEECTTSSCEEECCEEEE--HHHHH
T ss_pred --cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCC----ceEEEEEecCCceEeccceeec--cccee
Confidence 11222333322 567778899999999998876554332 111 112234556666432 122 33456
Q ss_pred EEeCCCCe
Q 007768 545 FWDWKSCK 552 (590)
Q Consensus 545 iwd~~t~~ 552 (590)
++|..+|+
T Consensus 231 ~ld~~tG~ 238 (369)
T 2hz6_A 231 YLTFMSGE 238 (369)
T ss_dssp HHHHHHHH
T ss_pred eeehhcCC
Confidence 66665555
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.99 E-value=1.2e-06 Score=85.78 Aligned_cols=248 Identities=10% Similarity=-0.003 Sum_probs=153.3
Q ss_pred EEEEEeCCCcEEEEecCCCCee----EEEeccCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCcEEEEecCC-Ccc
Q 007768 314 LILSAGMDTKVKIWDVVNSGKC----MRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETGQVIRTFSTG-KIP 387 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~----~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I~vWd~~t~~~~~~~~~~-~~~ 387 (590)
+|+.+.. +.|+.+++...... ...+......+..++|++++..|+.+ ...+.|.++++..+.....+... ..+
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 3444443 47888887322110 11222223457899999966555544 45689999999876554443322 456
Q ss_pred eEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC---CCcEEEEECCCCcEE
Q 007768 388 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFGIPVVI 464 (590)
Q Consensus 388 ~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~---Dg~I~iwdl~~~~~~ 464 (590)
..+.+.+.. +.++++....+.|.++++..................++++|++..|+.+.. .+.|..+++.....
T Consensus 82 ~~ia~d~~~--~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~- 158 (267)
T 1npe_A 82 EGIALDHLG--RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR- 158 (267)
T ss_dssp EEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-
T ss_pred cEEEEEecC--CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-
Confidence 677776643 356667677889999998754333333323356789999997666655554 36888888764432
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
..+..........+++++++..|+++. ..+.|.+++.......... .+ ......+++. .+.++++....+.|
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~---~~---~~~P~gi~~d-~~~lyva~~~~~~v 231 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL---EG---LQYPFAVTSY-GKNLYYTDWKTNSV 231 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE---EC---CCSEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe---cC---CCCceEEEEe-CCEEEEEECCCCeE
Confidence 222222334678899999877666555 4578999998754322211 11 1223345554 34444444467899
Q ss_pred EEEeCCCCeEEEEEecCCC-cEEEEEEcCC
Q 007768 544 WFWDWKSCKVFRTLKCHEG-VCIGCEWHPL 572 (590)
Q Consensus 544 ~iwd~~t~~~~~~l~~h~~-~V~~v~~sp~ 572 (590)
..+|..+++.+..+..... ...++++.|+
T Consensus 232 ~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 232 IAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EEEeCCCCCceEEEccccccccceeeecCc
Confidence 9999999999988875432 3577888874
No 236
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.97 E-value=2.7e-08 Score=111.24 Aligned_cols=273 Identities=14% Similarity=0.117 Sum_probs=176.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCC----------e-EEEEEccCCCEEEEEecCCeEEEEECCCCcEEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA----------V-RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~----------V-~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|+.++.++.|..+|. .+++.+..+...... + ..+++ .+..++.++.|+.|..+|..+|+.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDA-ASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 567778888899999998 688888777543211 0 12233 355788888999999999999999988
Q ss_pred ecCCCcc--eEEEEecCCCCCcEEEEEEC------CCeEEEEeCCCCceEEEEcCcC-----------------------
Q 007768 381 FSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHL----------------------- 429 (590)
Q Consensus 381 ~~~~~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~t~~~~~~~~~h~----------------------- 429 (590)
+...... ..+...|.-.+ ..++++.. +|.|+.+|..+|+.+..+....
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp EECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred eccCCCCCcceecCCCEEEC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 7653211 00000000001 34555543 5899999999999988875311
Q ss_pred --------CceeEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEeecC-CC-------Cc
Q 007768 430 --------GAVNTITFVDSNRRFVTSSDDK-------------------SLRVWEFGIPVVIKYISEP-HM-------HS 474 (590)
Q Consensus 430 --------~~V~~i~~~p~~~~l~s~s~Dg-------------------~I~iwdl~~~~~~~~~~~~-~~-------~~ 474 (590)
.....+++.+....++.++.++ .|..+|..+++.+-.+... +. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112478888888888887766 3999999999888776543 21 22
Q ss_pred eeEEEEcCCCC---EEEEEEcCCeEEEEEcCCceeeccccccc-----------Cc--------------------cccc
Q 007768 475 MPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA-----------GH--------------------IVAG 520 (590)
Q Consensus 475 i~~i~~sp~g~---~la~~s~dg~I~iwd~~~~~~~~~~~~~~-----------~~--------------------~~~~ 520 (590)
+....+..+|+ .+++++.+|.++++|..++..+....... +. ....
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22223334564 68888999999999998877652211100 00 0000
Q ss_pred ceEEEEEcCCCCEEEEE------------------------------------cCCCcEEEEeCCCCeEEEEEecCCCcE
Q 007768 521 YACQVNFSPDGRFVMSG------------------------------------DGEGKCWFWDWKSCKVFRTLKCHEGVC 564 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sg------------------------------------s~dg~I~iwd~~t~~~~~~l~~h~~~V 564 (590)
.-..++++|+..++++. ..+|.|..||+.+++.+..+..+.. +
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~ 460 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-W 460 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-C
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-C
Confidence 00126788877766542 1348899999999999988875433 2
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 565 IGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
....+.. .+.+|+.++.||.|++||
T Consensus 461 ~~~~~~t-~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 461 NGGTLST-AGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp CCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred cCceeEe-CCCEEEEECCcccchhhh
Confidence 3333333 456888899999999986
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.96 E-value=1.9e-07 Score=91.41 Aligned_cols=212 Identities=10% Similarity=0.047 Sum_probs=145.7
Q ss_pred eeEEEeccCCC--CeEEEEEccCCCEEEEEec--CCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC
Q 007768 334 KCMRTYMGHSK--AVRDISFCNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409 (590)
Q Consensus 334 ~~~~~~~~h~~--~V~~l~fspdg~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 409 (590)
+.+.++ .|.. ....+.|++++.++++.+. ++.|.++|+.+++.+..+..+.......+...+ ..++++.-.++
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKN 86 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCS
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCC
Confidence 345555 3443 3689999998755555543 589999999999999998765544444444443 25666667789
Q ss_pred eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCC----CceeEEEEcCCCC
Q 007768 410 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM----HSMPSISLHPNTN 485 (590)
Q Consensus 410 ~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~----~~i~~i~~sp~g~ 485 (590)
.+.++|..+.+.+..+...... ...+++++++++++..++.|.++|..+.+.+..+.-... ..+..+.|. ++.
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 9999999999998888532122 233555777777777789999999999888887764321 135577777 665
Q ss_pred EEEEEEcCCeEEEEEcCCceeeccccccc--------CcccccceEEEEEcCCCCEE-EEEcCCCcEEEEeCCCC
Q 007768 486 WLAAQSLDNQILIYSTRERFQLNKKKRFA--------GHIVAGYACQVNFSPDGRFV-MSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~v~~spdg~~l-~sgs~dg~I~iwd~~t~ 551 (590)
.++....++.|.+.|..++.....+..-. ..........|+|+|+++.| +++...++|+..++...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 55554467899999999887655443210 11111345789999998654 56667889998887553
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=9.3e-08 Score=102.92 Aligned_cols=223 Identities=9% Similarity=0.038 Sum_probs=148.4
Q ss_pred CCCEEEEEec-CCeEEEEECCCCcEEE--EecCCCcceEEEEecCCCCCcEEEEEE------------------CCCeEE
Q 007768 354 DGTKFLTASY-DKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGM------------------SDKKIV 412 (590)
Q Consensus 354 dg~~l~s~s~-Dg~I~vWd~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~lvsg~------------------~dg~I~ 412 (590)
||++|+.+.. +..|.+.|+.+.++.. .+..+..+..+.+...++ ..++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~-~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR-SNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB-CSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC-CcEEEEecccccccCCCCcccccccccCceEE
Confidence 7888877665 4679999999999888 444456666666632122 24556653 346899
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC--------------------------------------cEE
Q 007768 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK--------------------------------------SLR 454 (590)
Q Consensus 413 iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg--------------------------------------~I~ 454 (590)
++|..+.+.+.++.--. ....+.++|+|+++++++.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999998888875322 456788999999999888553 366
Q ss_pred EEECCC--CcE-EEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceee-----cccc-cccCcccccceEE
Q 007768 455 VWEFGI--PVV-IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL-----NKKK-RFAGHIVAGYACQ 524 (590)
Q Consensus 455 iwdl~~--~~~-~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~-----~~~~-~~~~~~~~~~v~~ 524 (590)
+.|..+ ... +..+.. .....++.++|+|+++++++ .+++|.++|+.+.... .... .............
T Consensus 258 VID~~~~~~~~~~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEeCcccCCceeEEEEec--CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 667665 333 444432 23567899999999887776 5689999999864210 0000 0111112334567
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCC----------CeEEEEEecCCCcEE-----EEEEcCCCCCEEEEEe
Q 007768 525 VNFSPDGRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEGVCI-----GCEWHPLEQSKVATCG 581 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t----------~~~~~~l~~h~~~V~-----~v~~sp~~~~~l~s~g 581 (590)
++|+|+|...++.-.++.|.+||+.+ .+.+.++..|-.+-. ++.++| ++++|+++.
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~N 406 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLS 406 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEE
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcC
Confidence 99999994445566799999999977 667888887765321 123467 566776654
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.92 E-value=1.2e-08 Score=102.90 Aligned_cols=250 Identities=11% Similarity=0.036 Sum_probs=160.4
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcc-eEEE
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVK 391 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~ 391 (590)
..|+.++.++.|..|| .+++.+..+..+...+.++...+++. |+.++.+ |..+|. +++.+..+...... ....
T Consensus 31 g~l~v~t~~~~l~~~d--~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN--TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp SCEECSSTTTTTEEEC--TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEE
T ss_pred CeEEEEcCCCEEEEEC--CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCce
Confidence 3566777788899998 35666555554555567777777765 4555544 888886 56554443322211 1112
Q ss_pred EecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 007768 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 471 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~ 471 (590)
+. ...+++++.++.|..+|.. ++....+..+...+.++...+++. ++.++.++.|..||.. +........ .
T Consensus 105 ~~-----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-~ 175 (330)
T 3hxj_A 105 IF-----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT-N 175 (330)
T ss_dssp EE-----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC-S
T ss_pred EE-----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec-C
Confidence 22 2458888889999999998 877777766666677777776665 6667778999999988 665555443 3
Q ss_pred CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 472 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
...+.++.+.+++.+++. + +.|..|| .++........ . ...+.++.+.++|. |..++.++.|..+| .++
T Consensus 176 ~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~---~--~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g 244 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYA---G--YWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDG 244 (330)
T ss_dssp SCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECC---S--SCCCSCCEECTTSC-EEEEETTTEEEEEC-TTS
T ss_pred CCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEcc---C--CcceeceEECCCCe-EEEEcCCCeEEEEC-CCC
Confidence 445677778777775544 4 7899999 45433322221 1 13345577788875 45566677888888 467
Q ss_pred eEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 552 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+.+..+......+.++.+.+ ++ .|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEEC
Confidence 77777765554445555654 33 567777787777765
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.89 E-value=5.4e-08 Score=99.54 Aligned_cols=222 Identities=10% Similarity=0.073 Sum_probs=138.4
Q ss_pred CCeEEEEEccCCCEEEEEec--CCeEEEEECCCCcEEEEecC------C--CcceEEEEecCCCCCcEEEEEEC-----C
Q 007768 344 KAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQVIRTFST------G--KIPYVVKLNPDDDKQNILLAGMS-----D 408 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~------~--~~~~~~~~~~~~~~~~~lvsg~~-----d 408 (590)
..+..|+++++|+.|++... ++.++||.+.+++. ..+.. . ..+..+.+.++ +.++++... +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~---g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN---GIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS---SEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC---CcEEEEcCCCCcCCC
Confidence 67899999999999888642 34356665555543 33321 1 23344555443 245555443 5
Q ss_pred CeEEEEeCCCCceEEEEcCc------CCceeEEEEeCCCCEE-EEEe---CCCcEEEEECCCCcEEEEeecCCCCcee-E
Q 007768 409 KKIVQWDMNTKEITQEYDQH------LGAVNTITFVDSNRRF-VTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMP-S 477 (590)
Q Consensus 409 g~I~iwD~~t~~~~~~~~~h------~~~V~~i~~~p~~~~l-~s~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~i~-~ 477 (590)
+.|.+||+.+++.+..+..+ ...++.+++.+++..+ ++.+ .++.|.+||+.++.....+. .+..... .
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~~~ 171 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAPED 171 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSCCS
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccccc
Confidence 89999999999877766432 2356899999865554 4444 57899999998877655542 2111100 1
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-cEEEEeCC---CC--
Q 007768 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWK---SC-- 551 (590)
Q Consensus 478 i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~~---t~-- 551 (590)
..+.++|..+.+.+.++.+..|. ..+..++|+|+|+.|+.++..+ .|+.++.. .+
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~-------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~ 232 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPH-------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL 232 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCC-------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred cceeECCEEEEeccCCCceecee-------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence 33444666666666666664432 1234699999999998887665 55555532 11
Q ss_pred ---eEEE--EEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 552 ---KVFR--TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ---~~~~--~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+... ...++.+....+++++ ++.++++...++.|.+||
T Consensus 233 ~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 233 TDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp CHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEE
T ss_pred ChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEE
Confidence 0000 1113344556789999 677888888889999986
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.87 E-value=4e-07 Score=89.10 Aligned_cols=206 Identities=8% Similarity=-0.021 Sum_probs=138.0
Q ss_pred CcEEEEecCCCcc--eEEEEecCCCCCcEEEEEEC--CCeEEEEeCCCCceEEEEcCcCC-ceeEEEEeCCCCEEEEEeC
Q 007768 375 GQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 375 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~ 449 (590)
.+.+.++..+... .-+.+.++ +.++++.+. ++.|+++|+.+++.+..+.-... ....+++.. +..+++.-.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~d---g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEN---DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWL 84 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECST---TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETT
T ss_pred ceEEEEEECCCCCCcccEEEeCC---CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEec
Confidence 3456666665443 45555543 244444443 68999999999999888753222 223566652 344555556
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
++.+.++|..+.+.+..+..+ ... ...++++++.|+++..++.|.++|..+......+..-...........+.|.
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 889999999999988888654 122 2345567877777777899999999886655444432211111235567787
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC-------------CcEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-------------GVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-------------~~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
+|.+.+....++.|.+.|..+++.+..+.... ....+++|+|++..+++|+...+.|.+
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 77655555568899999999999999997421 356899999966677788877777654
No 242
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.85 E-value=6.9e-07 Score=98.11 Aligned_cols=273 Identities=10% Similarity=0.051 Sum_probs=169.0
Q ss_pred CCEEEEEeC-CCcEEEEecCCCCeeEEEeccCCC-----------CeEEEEEccCCCE----EEEEecCCeEEEEECCCC
Q 007768 312 GHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSK-----------AVRDISFCNDGTK----FLTASYDKNIKYWDTETG 375 (590)
Q Consensus 312 g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~-----------~V~~l~fspdg~~----l~s~s~Dg~I~vWd~~t~ 375 (590)
+..|+.++. ++.|.-+|...+++.+..+..... ....++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777776 788888887226676666543221 1123555443444 888889999999999999
Q ss_pred cEEEEecCCC-----cceEEEEecCCCCCcEEEEEEC------CCeEEEEeCCCCceEEEEcCcCCce------------
Q 007768 376 QVIRTFSTGK-----IPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAV------------ 432 (590)
Q Consensus 376 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~t~~~~~~~~~h~~~V------------ 432 (590)
+.+....... .....-.... ..+++++. ++.|+.+|.++|+++..+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~----g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVK----DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEET----TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEeecCCCCCccceeecCCEEEC----CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 9998876543 1111001111 24566553 7999999999999988775322110
Q ss_pred --------------------------eEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCcEEEEeecC
Q 007768 433 --------------------------NTITFVDSNRRFVTSSDD----------------KSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 433 --------------------------~~i~~~p~~~~l~s~s~D----------------g~I~iwdl~~~~~~~~~~~~ 470 (590)
..+++.+...+++.++.+ +.|..+|..+++.+-.+...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 145666777788777665 37999999999887666543
Q ss_pred CCC--------ceeEEEEc-CCC---CEEEEEEcCCeEEEEEcCCceeeccccccc------------Ccc---------
Q 007768 471 HMH--------SMPSISLH-PNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFA------------GHI--------- 517 (590)
Q Consensus 471 ~~~--------~i~~i~~s-p~g---~~la~~s~dg~I~iwd~~~~~~~~~~~~~~------------~~~--------- 517 (590)
+.. ...-+... .+| ..++.++.+|.++++|..++..+....... +..
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~ 377 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR 377 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence 221 11112222 467 467778899999999998877654332110 000
Q ss_pred -------------cccceEEEEEcCCCCEEEEE---------------------------------c------CCCcEEE
Q 007768 518 -------------VAGYACQVNFSPDGRFVMSG---------------------------------D------GEGKCWF 545 (590)
Q Consensus 518 -------------~~~~v~~v~~spdg~~l~sg---------------------------------s------~dg~I~i 545 (590)
....-..++++|+..++++. + ..|.|..
T Consensus 378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A 457 (599)
T 1w6s_A 378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA 457 (599)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence 00000135677766665542 1 3578999
Q ss_pred EeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 546 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 546 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
||+.+++.+....... ++.+-.... .+.+|+.++.||.|+.||
T Consensus 458 ~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 458 YNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp ECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEE
T ss_pred EECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEE
Confidence 9999999988876321 111111111 345778889999999886
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.85 E-value=6.7e-07 Score=86.62 Aligned_cols=197 Identities=11% Similarity=0.033 Sum_probs=131.2
Q ss_pred cEEEEecCCCcceEEEEecCCCCCcEEEEEECCC--eEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCCCc
Q 007768 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+.+.++........-.+..++ +.++.+.+.+| .|+.+|+.+++.+..+...... .-.+++. .++.+++.-.++.
T Consensus 32 ~vv~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYRN--GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEET--TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEEecCCCCcccceEEEEC--CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCE
Confidence 456677666666544444432 36677777666 8999999999998887543322 1234544 2334445556889
Q ss_pred EEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
+.+||..+.+.+..+..+. ....++++++.|+.+..++.|.++|..+......+........-..+..+.|. +|+
T Consensus 109 v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 9999999999999887543 22333456777777766888999999886665554432211111334456776 776
Q ss_pred EEEEEcCCCcEEEEeCCCCeEEEEEecC------------CCcEEEEEEcCCCCCEEEEE
Q 007768 533 FVMSGDGEGKCWFWDWKSCKVFRTLKCH------------EGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h------------~~~V~~v~~sp~~~~~l~s~ 580 (590)
+.+..-.+..|.+.|..+++.+..+... ....++++|+|....+++||
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5555556889999999999999998753 13568999999555555554
No 244
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.84 E-value=5.7e-07 Score=87.11 Aligned_cols=196 Identities=10% Similarity=0.000 Sum_probs=136.4
Q ss_pred cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCce--eEEEEeCCCCEEEEEeCCCcE
Q 007768 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV--NTITFVDSNRRFVTSSDDKSL 453 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V--~~i~~~p~~~~l~s~s~Dg~I 453 (590)
+.+.++..........+..++ ..++++.+.+|.|+++|+.+++.+..+ - .... -.+++.. ++.+++.-.++.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEE
Confidence 456666665555444444433 367888888899999999999988877 2 2233 3355543 3455666678999
Q ss_pred EEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007768 454 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
.+||..+.+.+..+..+.. -..++ ++++.|+++..++.|.++|..+......+..-.....-..+..+.|. +|++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 9999999999998875322 23344 56788888877899999999887666554443322222345567776 7765
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEEecC-------------CCcEEEEEEcCCCCCEEEEEe
Q 007768 534 VMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 534 l~sgs~dg~I~iwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~s~g 581 (590)
.+..-.+..|.+.|..+++.+..+... ....++|+|+|....+++||-
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 555556789999999999999988742 136789999996666777663
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.83 E-value=7.5e-07 Score=97.60 Aligned_cols=274 Identities=14% Similarity=0.113 Sum_probs=168.3
Q ss_pred CCEEEEEeC-CCcEEEEecCCCCeeEEEeccCCC-C----------eEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE
Q 007768 312 GHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSK-A----------VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 312 g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~-~----------V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
+..|+.++. ++.|.-+|...+++.+..+..... . -..+++ .+..++.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456666776 788888887226666666543211 0 011233 35678888889999999999999998
Q ss_pred EecCCCcc--eEEEEecCCCCCcEEEEEEC------CCeEEEEeCCCCceEEEEcCcCCc--------------------
Q 007768 380 TFSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGA-------------------- 431 (590)
Q Consensus 380 ~~~~~~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~t~~~~~~~~~h~~~-------------------- 431 (590)
.+...... ..+...|.-.+ ..+++++. ++.|+.+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EecCCCCCccceeccCCEEEC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 87654310 00000000001 34666655 799999999999998877532211
Q ss_pred ------------------eeEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCcEEEEeecCCC-----
Q 007768 432 ------------------VNTITFVDSNRRFVTSSDD----------------KSLRVWEFGIPVVIKYISEPHM----- 472 (590)
Q Consensus 432 ------------------V~~i~~~p~~~~l~s~s~D----------------g~I~iwdl~~~~~~~~~~~~~~----- 472 (590)
...+++.+....++.++.+ +.|..+|..+++.+-.+...+.
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc
Confidence 0235677766677666532 3599999999988766653221
Q ss_pred ---CceeEEEEcCCCC---EEEEEEcCCeEEEEEcCCceeeccccccc------------Cccc-----------ccc--
Q 007768 473 ---HSMPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA------------GHIV-----------AGY-- 521 (590)
Q Consensus 473 ---~~i~~i~~sp~g~---~la~~s~dg~I~iwd~~~~~~~~~~~~~~------------~~~~-----------~~~-- 521 (590)
....-+....+|+ .++.++.+|.++++|..++..+.....-. +... ...
T Consensus 299 ~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~ 378 (571)
T 2ad6_A 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI 378 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred ccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEE
Confidence 1111122234674 57778889999999998876554322110 0000 000
Q ss_pred ---------eEEEEEcCCCCEEEEEc-------------------------------------CCCcEEEEeCCCCeEEE
Q 007768 522 ---------ACQVNFSPDGRFVMSGD-------------------------------------GEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 522 ---------v~~v~~spdg~~l~sgs-------------------------------------~dg~I~iwd~~t~~~~~ 555 (590)
-..++++|+..+|++.+ .+|.|..||..+++.+.
T Consensus 379 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W 458 (571)
T 2ad6_A 379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW 458 (571)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred CCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEE
Confidence 02367888877776653 35789999999999998
Q ss_pred EEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 556 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 556 ~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
++..... +.+..+.. .+.+|+.++.||.|+.||
T Consensus 459 ~~~~~~~-~~~~~~~t-~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 459 TKWEKFA-AWGGTLYT-KGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EEEESSC-CCSBCEEE-TTTEEEEECTTSEEEEEE
T ss_pred EecCCCC-ccceeEEE-CCCEEEEEcCCCeEEEEE
Confidence 8874322 22222222 245777789999999886
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.82 E-value=5.4e-07 Score=87.23 Aligned_cols=198 Identities=10% Similarity=0.112 Sum_probs=136.6
Q ss_pred eeEEEeccCCCC--eEEEEEccCCCEEEEEecCC--eEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC
Q 007768 334 KCMRTYMGHSKA--VRDISFCNDGTKFLTASYDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409 (590)
Q Consensus 334 ~~~~~~~~h~~~--V~~l~fspdg~~l~s~s~Dg--~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 409 (590)
+.++++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+..........+.+.++ .++++.-.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~--~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD--KIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT--EEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC--EEEEEEeeCC
Confidence 345556 45433 4789998 677777777766 89999999999999988776655544444433 5666666789
Q ss_pred eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC-C---CceeEEEEcCCCC
Q 007768 410 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-M---HSMPSISLHPNTN 485 (590)
Q Consensus 410 ~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-~---~~i~~i~~sp~g~ 485 (590)
.+.+||..+.+.+.++.... .-..++ +++..|+.+..++.|.++|..+.+.+..+.-.. . ..+..+.|. +|.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999999999886433 222333 567777777667889999999988888776422 1 223456776 676
Q ss_pred EEEEEEcCCeEEEEEcCCceeeccccc--cc-----CcccccceEEEEEcCCCCEEEEEcC
Q 007768 486 WLAAQSLDNQILIYSTRERFQLNKKKR--FA-----GHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~~~~~~--~~-----~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
.++..-.++.|.+.|..++.....+.. +. ........+.|+|+|+++.|++.+.
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 555555688999999988876544432 11 1111235678999998877766553
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.80 E-value=5.5e-06 Score=94.56 Aligned_cols=310 Identities=11% Similarity=0.134 Sum_probs=179.1
Q ss_pred cccccceeecCCccccccCCCccCCc-ceEEEecCCCC----CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEE
Q 007768 264 TDYQGRSWIAPPKDAKAANDHCYIPK-RLVHTWSGHTK----GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT 338 (590)
Q Consensus 264 ~d~~~r~w~~~~~~~~~~~~~~~~p~-~~i~~l~gH~~----~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~ 338 (590)
.|..++.|+.....+.. |-+. .....+..+.. .|.+|...++ +.+.+ ++. +-|.+|+. ..++....
T Consensus 95 ~d~~g~lWigT~~Gl~~-----yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~-g~lwi-~t~-~gl~~~~~-~~~~~~~~ 165 (795)
T 4a2l_A 95 TDSQGRVWIGTRDGLSR-----YDEEKDIFQNFFYEKNGKHLQVNGIEEISP-EQLLI-STP-EGLIMFDI-KESKFIDD 165 (795)
T ss_dssp ECTTSCEEEEESSCEEE-----EETTTTEEEEECCEETTEECCCCEEEEEET-TEEEE-EET-TEEEEEET-TTTEEECS
T ss_pred ECCCCCEEEEeCCchhe-----eCCCCCeEEeccccccCCCceEEEEEECCC-CCEEE-EEC-CceEEEEC-CCCEEEec
Confidence 46678888876543321 1111 11222322211 1889988877 55544 454 45888987 34332211
Q ss_pred eccC-CCC-eEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeC
Q 007768 339 YMGH-SKA-VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 339 ~~~h-~~~-V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 416 (590)
...+ ... |.++...+++.+.+ ++.++-|..|+..+++............+.++..+.. ..+.+|+.++.|.+||.
T Consensus 166 ~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~--g~lwigt~~~Gl~~~~~ 242 (795)
T 4a2l_A 166 SFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSP--TRIWVATEGAGLFLINP 242 (795)
T ss_dssp SSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEET--TEEEEEEBSSCEEEEET
T ss_pred cCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC--CCEEEEECCCCeEEEeC
Confidence 1111 123 88898888876444 6665568999988876654322111222333333222 34666776666999999
Q ss_pred CCCceEEEEcC-------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec------CCCCceeEEEEcCC
Q 007768 417 NTKEITQEYDQ-------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE------PHMHSMPSISLHPN 483 (590)
Q Consensus 417 ~t~~~~~~~~~-------h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~------~~~~~i~~i~~sp~ 483 (590)
.+++....... ....|.++...+++...+. +.+ -|.+|+............ .....|.++...++
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 320 (795)
T 4a2l_A 243 KTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ 320 (795)
T ss_dssp TTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT
T ss_pred CCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC
Confidence 87765433221 1356899998888765554 444 588999877654433221 12356899999988
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecc-cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe----
Q 007768 484 TNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---- 558 (590)
Q Consensus 484 g~~la~~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~---- 558 (590)
|. |.+|+.++-|..|+......... ............|.++...++|.+ ..|+.++-|..|+..+++......
T Consensus 321 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 321 GG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDE 398 (795)
T ss_dssp SC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC---
T ss_pred cC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence 86 55667777799998754321110 000011112455888888888875 457777779999988765433221
Q ss_pred ----cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 559 ----CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 559 ----~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.....|.+++..+ ++.+|..|+.++-|.+||
T Consensus 399 ~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp ---CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred cccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEe
Confidence 1235688888877 555356666655566653
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.78 E-value=1.6e-07 Score=101.15 Aligned_cols=236 Identities=9% Similarity=0.034 Sum_probs=156.1
Q ss_pred CCCCEEEEEe-CCCcEEEEecCCCCeeEEEecc-CCCCeEEEEE-c-cCCCEEEEEe------------------cCCeE
Q 007768 310 KYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISF-C-NDGTKFLTAS------------------YDKNI 367 (590)
Q Consensus 310 ~~g~~L~sgs-~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~f-s-pdg~~l~s~s------------------~Dg~I 367 (590)
+ |++|+.+. .++.|.+.|+ ...++...+.- ....+..+++ + |++.++++++ +++.+
T Consensus 100 D-G~~lfVnd~~~~rVavIdl-~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 D-GRFLFMNDKANTRVARVRC-DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp E-EEEEEEEETTTTEEEEEET-TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred C-CCEEEEEcCCCCEEEEEEC-CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 5 55665555 4567999999 67787775532 2356888998 5 8999998884 35689
Q ss_pred EEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC--------------------------------------C
Q 007768 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--------------------------------------K 409 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--------------------------------------g 409 (590)
.++|.++++.+..+..+..+.-+.+.+++ .++++.+.+ +
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdG---k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEG---KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSS---SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCC---CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 99999999999998875566677777754 344444432 2
Q ss_pred eEEEEeCCC--Cce-EEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCc------------EEEEeecCCCC
Q 007768 410 KIVQWDMNT--KEI-TQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPV------------VIKYISEPHMH 473 (590)
Q Consensus 410 ~I~iwD~~t--~~~-~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~------------~~~~~~~~~~~ 473 (590)
.|.+.|.++ +.. +..+.. .....++.++|+|+++++++ .+.+|.++|+.+.. ....+ ....
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~ 331 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGL 331 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCS
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCC
Confidence 477778777 444 444432 33567899999999877665 57899999998542 23333 3445
Q ss_pred ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce-------eecccccccCccc---ccceEEEEEcCCCCEEEEEcC---C
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERF-------QLNKKKRFAGHIV---AGYACQVNFSPDGRFVMSGDG---E 540 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~-------~~~~~~~~~~~~~---~~~v~~v~~spdg~~l~sgs~---d 540 (590)
....++|+|+|...++...|++|.+|++.... .......+.-+.. ......+.++|||++|++... |
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence 67889999999545566688999999987621 0111112211111 011112456899999998863 3
Q ss_pred Cc----------EEEEeCCCCeE
Q 007768 541 GK----------CWFWDWKSCKV 553 (590)
Q Consensus 541 g~----------I~iwd~~t~~~ 553 (590)
+. -.++|+..+++
T Consensus 412 r~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 412 RFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp SSCCCCSSCCEEEEEEECSSSSC
T ss_pred ccccCCCCCCCcceEEEcCCCcE
Confidence 32 18899966553
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.77 E-value=2.4e-05 Score=89.28 Aligned_cols=278 Identities=9% Similarity=0.039 Sum_probs=171.9
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc-------CCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-------HSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-------h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
+...|.+|...++ +. |..|+.++-|.+|+. ..++....... ....|.++...++|.+.+ |+.+ -|.+|
T Consensus 213 ~~~~i~~i~~d~~-g~-lwigt~~~Gl~~~~~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~ 287 (795)
T 4a2l_A 213 GTKQIQAILQQSP-TR-IWVATEGAGLFLINP-KTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIY 287 (795)
T ss_dssp -CCCEEEEEEEET-TE-EEEEEBSSCEEEEET-TTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEE
T ss_pred CCCeeEEEEEcCC-CC-EEEEECCCCeEEEeC-CCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheE
Confidence 3467888888776 54 455554444888987 34443332221 135699999998887544 5555 58899
Q ss_pred ECCCCcEEEEecCC------CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC------cCCceeEEEEe
Q 007768 371 DTETGQVIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ------HLGAVNTITFV 438 (590)
Q Consensus 371 d~~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~------h~~~V~~i~~~ 438 (590)
|..++......... ....+.++..+.. ..+.+|+.++.|..|+..++........ ....|.++...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ--GGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT--SCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC--cCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 98887655433211 1123444444433 3477888888899999876543322110 23468899888
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeec-------CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 439 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-------~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
+++. |..|+.++-|..|+..+......... .....|.+++..+++..|.+|+.++-|.+|+..++.... ..
T Consensus 366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~ 443 (795)
T 4a2l_A 366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FN 443 (795)
T ss_dssp TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-EC
T ss_pred CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-ee
Confidence 7775 55577777799999877654443221 123568899998888867778887889999987653221 11
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec------CCCcEEEEEEcCCCCCEEEEEeCCCc
Q 007768 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC------HEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~------h~~~V~~v~~sp~~~~~l~s~g~Dg~ 585 (590)
..........|.++...++|++.+... . -|.+||..+++....... +...|.++...+ ++.+.+. +..|
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWig-t~~G- 518 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIG-GEEG- 518 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEE-ESSC-
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEEE-eCCc-
Confidence 111112235678888888888666554 4 589999887765432211 235688888887 4544444 3444
Q ss_pred EEEc
Q 007768 586 IKYW 589 (590)
Q Consensus 586 I~iW 589 (590)
|.+|
T Consensus 519 l~~~ 522 (795)
T 4a2l_A 519 LSVF 522 (795)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4444
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=2.5e-06 Score=95.37 Aligned_cols=239 Identities=13% Similarity=0.173 Sum_probs=155.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCC----CCeEEEEEccCCCEEEEEec------CCeEEEEECCCCcEEEEe
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS----KAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~----~~V~~l~fspdg~~l~s~s~------Dg~I~vWd~~t~~~~~~~ 381 (590)
+..|+.++.|+.|..+|. .+++.+..+.... ..+.+.-.-.++ .+++++. +|.|..+|..+|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDA-KTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEET-TTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 457888889999999999 6788777665421 111110001134 4555543 589999999999999887
Q ss_pred cCC--Ccc------------------------------eEEEEecCCCCCcEEEEEECCC-------------------e
Q 007768 382 STG--KIP------------------------------YVVKLNPDDDKQNILLAGMSDK-------------------K 410 (590)
Q Consensus 382 ~~~--~~~------------------------------~~~~~~~~~~~~~~lvsg~~dg-------------------~ 410 (590)
... ... ....+.+. ..+++++..++ .
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~---~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE---LDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC---CCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 542 100 01233332 25677777665 4
Q ss_pred EEEEeCCCCceEEEEcC--cC-------CceeEEEEeCCCC---EEEEEeCCCcEEEEECCCCcEEEEeecCC-------
Q 007768 411 IVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPH------- 471 (590)
Q Consensus 411 I~iwD~~t~~~~~~~~~--h~-------~~V~~i~~~p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~------- 471 (590)
|..+|..+++.+..+.. |. .++....+..+++ .++.++.+|.++++|..+++.+.......
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 351 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV 351 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccc
Confidence 99999999999988764 22 2222233333564 68899999999999999988774432211
Q ss_pred ----CCc------------------------eeEEEEcCCCCEEEEEE--------------------------------
Q 007768 472 ----MHS------------------------MPSISLHPNTNWLAAQS-------------------------------- 491 (590)
Q Consensus 472 ----~~~------------------------i~~i~~sp~g~~la~~s-------------------------------- 491 (590)
..+ -..++++|+..++++..
T Consensus 352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (668)
T 1kv9_A 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV 431 (668)
T ss_dssp CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence 000 11267888777766532
Q ss_pred ----cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCC
Q 007768 492 ----LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 492 ----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
.+|.|..||+.+++..-....... .....+...+.+|++|+.+|.|++||..+++.+..++...
T Consensus 432 p~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 432 PAAVVSGALLAWDPVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp CGGGCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCccceEEEEeCCCCcEEEEccCCCC------CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 237799999988876544332111 1112344468899999999999999999999999998654
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.77 E-value=1.9e-06 Score=94.35 Aligned_cols=238 Identities=14% Similarity=0.028 Sum_probs=150.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCC----CCeEE-EEEccCCCEEEEEec------CCeEEEEECCCCcEEEE
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS----KAVRD-ISFCNDGTKFLTASY------DKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~----~~V~~-l~fspdg~~l~s~s~------Dg~I~vWd~~t~~~~~~ 380 (590)
+..|+.++.|+.|..+|. .+++.+..+.... ..+.+ ... .++ .+++++. ++.|..+|..+|+.+..
T Consensus 115 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDA-KTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEEC-CCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 467888888999999998 6777776654221 01211 111 134 5555554 79999999999999988
Q ss_pred ecCCCcc---------------------------------------eEEEEecCCCCCcEEEEEECC-------------
Q 007768 381 FSTGKIP---------------------------------------YVVKLNPDDDKQNILLAGMSD------------- 408 (590)
Q Consensus 381 ~~~~~~~---------------------------------------~~~~~~~~~~~~~~lvsg~~d------------- 408 (590)
+...... ..+.+.+. ..+++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~---~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK---LNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT---TTEEEEECCCCSCSCGGGSCSCC
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC---CCeEEEECCCCccccCCccCCCc
Confidence 7653221 01222221 2355555532
Q ss_pred ---CeEEEEeCCCCceEEEEcCc--CC----ceeE---EEEeCCCC---EEEEEeCCCcEEEEECCCCcEEEEeecCCC-
Q 007768 409 ---KKIVQWDMNTKEITQEYDQH--LG----AVNT---ITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHM- 472 (590)
Q Consensus 409 ---g~I~iwD~~t~~~~~~~~~h--~~----~V~~---i~~~p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~- 472 (590)
+.|..+|..+++.+..+... .. .+.. +....+|+ .++.++.+|.++++|..+++.+........
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 36999999999998887532 11 1112 22223563 577888999999999999887766543220
Q ss_pred -----------Cce--------------------------eEEEEcCCCCEEEEEEc-----------------------
Q 007768 473 -----------HSM--------------------------PSISLHPNTNWLAAQSL----------------------- 492 (590)
Q Consensus 473 -----------~~i--------------------------~~i~~sp~g~~la~~s~----------------------- 492 (590)
.++ ..++++|+..+|++.+.
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 111 24678888777777643
Q ss_pred --------------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe
Q 007768 493 --------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 493 --------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
++.|..||+.++..+.....- ..... ..+...+.+++.++.||.|++||..+++++.++.
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~-----~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWG-----GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCS-----BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccc-----eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 467888888877655433221 11111 1222346678889999999999999999999998
Q ss_pred cCC
Q 007768 559 CHE 561 (590)
Q Consensus 559 ~h~ 561 (590)
...
T Consensus 503 ~~~ 505 (571)
T 2ad6_A 503 MPS 505 (571)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.76 E-value=4.3e-06 Score=91.77 Aligned_cols=274 Identities=15% Similarity=0.080 Sum_probs=166.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCC---------eEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA---------VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~---------V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
+..|+.++.++.|.-+|. .+++.+..+...... ...+++ .+..++.++.|+.|..+|..+|+.+..+.
T Consensus 68 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDA-KTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTEEEEEETTTEEEEEES-SSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEC-CCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 345666666445888898 678777776543221 012222 35678888899999999999999998876
Q ss_pred CCCc-----ce-EEEEecCC-CCCcEEEEEEC------CCeEEEEeCCCCceEEEEcCcCCc------------------
Q 007768 383 TGKI-----PY-VVKLNPDD-DKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGA------------------ 431 (590)
Q Consensus 383 ~~~~-----~~-~~~~~~~~-~~~~~lvsg~~------dg~I~iwD~~t~~~~~~~~~h~~~------------------ 431 (590)
.... .. .-.+.... .....+++++. ++.|+.+|..+|+.+.........
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 5431 10 01111111 11125666653 789999999999988765421100
Q ss_pred -----------------------eeEEEEeCCCCEEEEEeC--------------------C----CcEEEEECCCCcEE
Q 007768 432 -----------------------VNTITFVDSNRRFVTSSD--------------------D----KSLRVWEFGIPVVI 464 (590)
Q Consensus 432 -----------------------V~~i~~~p~~~~l~s~s~--------------------D----g~I~iwdl~~~~~~ 464 (590)
-..+++.|...+++.+.. | +.|..+|..+++.+
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~ 304 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence 023566677777776653 2 58999999999888
Q ss_pred EEeecCCCC--------ceeEEEEc-CCCC---EEEEEEcCCeEEEEEcCCceeeccccccc------------Cc----
Q 007768 465 KYISEPHMH--------SMPSISLH-PNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA------------GH---- 516 (590)
Q Consensus 465 ~~~~~~~~~--------~i~~i~~s-p~g~---~la~~s~dg~I~iwd~~~~~~~~~~~~~~------------~~---- 516 (590)
-.+...+.. ...-+... .+|+ .++.++.+|.++++|..++..+.....-. +.
T Consensus 305 W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 384 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER 384 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred EEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEc
Confidence 776542211 11111221 4664 78888999999999998876553322110 00
Q ss_pred -------------ccccc-----------eEEEEEcCCCCEEEEEc---------------------------------C
Q 007768 517 -------------IVAGY-----------ACQVNFSPDGRFVMSGD---------------------------------G 539 (590)
Q Consensus 517 -------------~~~~~-----------v~~v~~spdg~~l~sgs---------------------------------~ 539 (590)
..... -..++++|+..++++.. .
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~ 464 (582)
T 1flg_A 385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH 464 (582)
T ss_dssp TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred cccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence 00000 01356677655554432 3
Q ss_pred CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+|.|..||+.+++.+.+...+.. +..-.... .+.+|+.++.||.|+.||
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEE
Confidence 68899999999999888774432 21111111 245788899999999886
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.76 E-value=3.4e-06 Score=80.90 Aligned_cols=197 Identities=12% Similarity=0.028 Sum_probs=130.2
Q ss_pred cEEEEecCCCcceEEEEecCCCCCcEEEEEECC--CeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCCCc
Q 007768 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+.+..+.+......-.+..++ +.++.+.+.. ..|+.+|+.+++.+..+.-.... --.+++. .++.++..-.++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 456666555555544444433 3566666654 48999999999998887543322 1334544 2445555667899
Q ss_pred EEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
+.+||..+.+.+..+..+.. -..++ +++..|+++..++.|.++|..+......+..-.....-..+..+.+. +|+
T Consensus 87 v~v~D~~tl~~~~ti~~~~~--Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGE--GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEETTTTEEEEEEECSSC--CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECCcCcEEEEEeCCCC--ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999998875432 23444 56777777777899999999887665544432221112344556665 676
Q ss_pred EEEEEcCCCcEEEEeCCCCeEEEEEecC-------------CCcEEEEEEcCCCCCEEEEE
Q 007768 533 FVMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~s~ 580 (590)
..+..-.+..|.+.|..+++.+..+... ....++++|+|....+++||
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 5555556779999999999999998732 13568999999655555555
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.72 E-value=2.7e-06 Score=81.62 Aligned_cols=197 Identities=10% Similarity=0.089 Sum_probs=135.1
Q ss_pred eeEEEeccCC--CCeEEEEEccCCCEEEEEecC--CeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC
Q 007768 334 KCMRTYMGHS--KAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409 (590)
Q Consensus 334 ~~~~~~~~h~--~~V~~l~fspdg~~l~s~s~D--g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 409 (590)
+.++++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+++.+..+..........+...+ ..++++.-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--DRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--CEEEEEEeeCC
Confidence 455556 454 3466899986 5666666665 48999999999999998877665544444443 35677777789
Q ss_pred eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC-C---CceeEEEEcCCCC
Q 007768 410 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-M---HSMPSISLHPNTN 485 (590)
Q Consensus 410 ~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-~---~~i~~i~~sp~g~ 485 (590)
.+.+||..+.+.+.++.... .-..++ +++..|+.+..++.|.++|..+.+.+..+.... . ..+..+.+. +|.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999999886433 223444 466777777778899999999988887775421 1 234456655 566
Q ss_pred EEEEEEcCCeEEEEEcCCceeeccccccc--C------cccccceEEEEEcCCCCEEEEEc
Q 007768 486 WLAAQSLDNQILIYSTRERFQLNKKKRFA--G------HIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~~~~~~~~--~------~~~~~~v~~v~~spdg~~l~sgs 538 (590)
.++..-.++.|.+.|..++..+..+..-. . .......+.|+++|+++.|++.+
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 55555468899999998877654433211 0 11234567899999876665544
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.67 E-value=2.4e-05 Score=78.23 Aligned_cols=236 Identities=9% Similarity=-0.004 Sum_probs=138.9
Q ss_pred eeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC--CeE
Q 007768 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKI 411 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I 411 (590)
+.+..+... .....++|+++++++++-..++.|..||... .....+.....+..+.+.+++ +++++.... ..|
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG---~l~vad~~~~~~~v 97 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG---DLVATGWNADSIPV 97 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS---CEEEEEECTTSCEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC---cEEEEeccCCcceE
Confidence 334444322 4578899999998777766789999999875 444445555556666666543 455554432 357
Q ss_pred EEEeCCCCceEEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE-EEEee------c--CCCCceeEEEEc
Q 007768 412 VQWDMNTKEITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-IKYIS------E--PHMHSMPSISLH 481 (590)
Q Consensus 412 ~iwD~~t~~~~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~-~~~~~------~--~~~~~i~~i~~s 481 (590)
..+|..+++....... .......++..+.+..+++-..++.|+++|...... +.... . ........+ +
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 7888888875433321 122334555555554455554688899999765421 21110 0 111223444 7
Q ss_pred CCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEE--Ee
Q 007768 482 PNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT--LK 558 (590)
Q Consensus 482 p~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~--l~ 558 (590)
+++++|+++. ..+.|..|++.....+.....+.. ......++++++|+++++....+.|.++|.. ++.... +.
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 8887666654 567899999864111111111110 0123358999999887777778899999975 655332 23
Q ss_pred cCCCcEEEEEEc---CCCCCEEEEE
Q 007768 559 CHEGVCIGCEWH---PLEQSKVATC 580 (590)
Q Consensus 559 ~h~~~V~~v~~s---p~~~~~l~s~ 580 (590)
..-...++++|. |+...++++.
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred cccCCceEEEEecccCCCCEEEEEC
Confidence 333468999998 7434444443
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.67 E-value=7e-06 Score=82.78 Aligned_cols=234 Identities=12% Similarity=0.094 Sum_probs=146.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC--------------------CCcceEEEEecCCCCCcEEE
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--------------------GKIPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~lv 403 (590)
....+++|.+++++++++..++.|..|+..++........ ...+..+.+.+.. ..|+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~---g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN---NQLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT---TEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC---CcEE
Confidence 4467789999998888888899999999887654322110 1234455555421 2355
Q ss_pred EEECCCeEEEEeCCCCceEEEEc---C-cCCceeEEEEeC-CCCEEEEEeC-----------------CCcEEEEECCCC
Q 007768 404 AGMSDKKIVQWDMNTKEITQEYD---Q-HLGAVNTITFVD-SNRRFVTSSD-----------------DKSLRVWEFGIP 461 (590)
Q Consensus 404 sg~~dg~I~iwD~~t~~~~~~~~---~-h~~~V~~i~~~p-~~~~l~s~s~-----------------Dg~I~iwdl~~~ 461 (590)
++...+.|..+|..++....... + .....+.+++.+ +|+.+++... ++.|..||....
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 56556668999987664322211 1 123468899999 8877776533 367888887665
Q ss_pred cEEEEeecCCCCceeEEEEcCCCCEEEEE-EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-
Q 007768 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG- 539 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~la~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~- 539 (590)
....... .......|+++|++++|+++ +..+.|.+|++..... .....+.. ..+ ...+++.++|++.++...
T Consensus 176 ~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 176 ETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVK--IPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp EEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEE--CSS-EEEEEECTTSCEEEEEEEE
T ss_pred EEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEe--CCC-CCCeEECCCCCEEEEecCc
Confidence 5432221 12345679999999877666 4568999999875211 01111111 112 556899999987766544
Q ss_pred ---------CCcEEEEeCCCCeEEEEEecCC----CcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 540 ---------EGKCWFWDWKSCKVFRTLKCHE----GVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 540 ---------dg~I~iwd~~t~~~~~~l~~h~----~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.+.|..+|. .++.+..+.... ..+.++++. ++.++++....+.|.++
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEE
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEE
Confidence 467888986 578777776543 346667663 45555555566777665
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.66 E-value=1.2e-05 Score=88.18 Aligned_cols=255 Identities=14% Similarity=0.101 Sum_probs=155.1
Q ss_pred EEEEEeCCCcEEEEecCCCCeeEEEeccCC----CCeEE-EEEccCCCEEEEEe------cCCeEEEEECCCCcEEEEec
Q 007768 314 LILSAGMDTKVKIWDVVNSGKCMRTYMGHS----KAVRD-ISFCNDGTKFLTAS------YDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~----~~V~~-l~fspdg~~l~s~s------~Dg~I~vWd~~t~~~~~~~~ 382 (590)
+|+.++.|+.|..+|. .+++.+....... ..+.+ -.+ .++ .+++++ .++.|+.+|..+|+.+..+.
T Consensus 123 rV~v~t~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNA-ETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEEC-CCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 3788888999999998 6777776654221 01221 111 144 455554 37999999999999998876
Q ss_pred CCCcce---------------------------------------EEEEecCCCCCcEEEEEECC---------------
Q 007768 383 TGKIPY---------------------------------------VVKLNPDDDKQNILLAGMSD--------------- 408 (590)
Q Consensus 383 ~~~~~~---------------------------------------~~~~~~~~~~~~~lvsg~~d--------------- 408 (590)
...... ...+.+ ...+++.+..+
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~---~~g~vy~g~g~~~p~~~~~r~gd~~y 276 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP---GTNLIYFGTGNPAPWNETMRPGDNKW 276 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET---TTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC---CCCEEEEeCCCCccccCcccCCCccc
Confidence 543210 112222 22466776655
Q ss_pred -CeEEEEeCCCCceEEEEcCcCC------ce---eEEEEe-CCC---CEEEEEeCCCcEEEEECCCCcEEEEeecCC---
Q 007768 409 -KKIVQWDMNTKEITQEYDQHLG------AV---NTITFV-DSN---RRFVTSSDDKSLRVWEFGIPVVIKYISEPH--- 471 (590)
Q Consensus 409 -g~I~iwD~~t~~~~~~~~~h~~------~V---~~i~~~-p~~---~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~--- 471 (590)
+.|..+|..+++.+..++.... .+ .-+... .+| ..++.++.+|.++++|..+++.+.......
T Consensus 277 ~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 356 (599)
T 1w6s_A 277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN 356 (599)
T ss_dssp SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred cceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence 3899999999999888754221 11 112222 456 467778999999999999988876554211
Q ss_pred ---------CCc--------------------------eeEEEEcCCCCEEEEEE-------------------------
Q 007768 472 ---------MHS--------------------------MPSISLHPNTNWLAAQS------------------------- 491 (590)
Q Consensus 472 ---------~~~--------------------------i~~i~~sp~g~~la~~s------------------------- 491 (590)
..+ -..++++|+..+|++..
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 001 12456777777665543
Q ss_pred --------------cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEE
Q 007768 492 --------------LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 492 --------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
..|.|..||+.+++.+-.... ......+. +...+.+|+.++.||.|+.||.++|+.+.++
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~-----~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGT-----MATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBC-----EEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcc-----eEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 235677777776654433221 11111111 1225678888999999999999999999999
Q ss_pred ecCCCcE-EEEEEcCCCCCEEEEE
Q 007768 558 KCHEGVC-IGCEWHPLEQSKVATC 580 (590)
Q Consensus 558 ~~h~~~V-~~v~~sp~~~~~l~s~ 580 (590)
+...+.+ .-+.|..++..+|++.
T Consensus 511 ~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 511 KIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eCCCCcEeccEEEEeCCEEEEEEE
Confidence 8654322 1244444344444443
No 258
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.65 E-value=2.5e-05 Score=76.33 Aligned_cols=222 Identities=12% Similarity=0.047 Sum_probs=135.7
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCcEE
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETGQVI 378 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I~vWd~~t~~~~ 378 (590)
..+.+++|.++++.++++....+.|.++++ ........+.........+++++++..|+.+ ...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~-~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASL-HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEES-SSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEec-CCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 357899999974666666667889999998 3333333333333568899999976555544 45689999998754332
Q ss_pred EEecCC-CcceEEEEecCCCCCcEEEEEEC--CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEE-EeCCCcEE
Q 007768 379 RTFSTG-KIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT-SSDDKSLR 454 (590)
Q Consensus 379 ~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s-~s~Dg~I~ 454 (590)
...... ..+..+++.+.. +.++++... .+.|..+++..................+++++++.+|+. -...+.|.
T Consensus 115 ~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp EEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 223222 456667777643 245555443 478988888643322222233456789999998766554 45567899
Q ss_pred EEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007768 455 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
++++........+. .......+++. +..|+++. ..+.|.+++..++..+..+..-.. .....+++.|++.
T Consensus 193 ~~~~~g~~~~~~~~--~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~----~~p~gi~~~~~~~ 263 (267)
T 1npe_A 193 CLNPAQPGRRKVLE--GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ----TRLYGITIALSQC 263 (267)
T ss_dssp EEETTEEEEEEEEE--CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC----CCCCCEEEECSCC
T ss_pred EEecCCCceEEEec--CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc----cccceeeecCccC
Confidence 99987544333332 22234566654 45555555 568999999987765544332111 1133477777754
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.64 E-value=2e-05 Score=78.81 Aligned_cols=239 Identities=11% Similarity=0.032 Sum_probs=144.7
Q ss_pred CCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC--
Q 007768 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-- 364 (590)
Q Consensus 287 ~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D-- 364 (590)
.+.+++..|... .....++|.++ +.++++...++.|..||. .+.....+. ....+..+++.++|+++++....
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~--~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITP--DGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECT--TCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred CCceEeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECC--CCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCc
Confidence 345667777543 56789999998 787777778899999987 233333332 34568899999999966655432
Q ss_pred CeEEEEECCCCcEEEEecCC--CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce-EEEEc---------CcCCce
Q 007768 365 KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYD---------QHLGAV 432 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-~~~~~---------~h~~~V 432 (590)
..|..+|..+++........ ......+... ...++++-..++.|+++|..++.. +.... ......
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~---~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLS---DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESS---SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCcccccC---CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 24777788888765433322 2222222221 223444444689999999876532 21111 111234
Q ss_pred eEEEEeCCCCEEEEE-eCCCcEEEEECCC-CcE--EEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007768 433 NTITFVDSNRRFVTS-SDDKSLRVWEFGI-PVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~-s~Dg~I~iwdl~~-~~~--~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
+.| ++++++|+.+ ...+.|..|++.. +.. ...+.. ......++++++|+++++....+.|.+|+... ....
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G-~~~~ 246 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTI 246 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEE
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCCC-CEEE
Confidence 555 7777765544 5577899999864 211 111111 13456789999998877777788999998753 2211
Q ss_pred ccccccCcccccceEEEEEc---CCCCEEEEEcCCC
Q 007768 509 KKKRFAGHIVAGYACQVNFS---PDGRFVMSGDGEG 541 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~s---pdg~~l~sgs~dg 541 (590)
...... .....++++|. |+++.|++.+..+
T Consensus 247 -~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 247 -IAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -EECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -Eeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 111111 12446789998 8988777766543
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.64 E-value=2e-05 Score=79.33 Aligned_cols=243 Identities=12% Similarity=0.091 Sum_probs=143.7
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc--------------------CCCCeEEEEEcc
Q 007768 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG--------------------HSKAVRDISFCN 353 (590)
Q Consensus 294 ~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--------------------h~~~V~~l~fsp 353 (590)
.+.+.-....+++|.++ +++++++..++.|..|+. ..+. +..+.. ....+..|++.+
T Consensus 13 ~~~g~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 13 LIEAPSYAPNSFTFDST-NKGFYTSVQDGRVIKYEG-PNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp EEECSSSCCCCEECCTT-CSSEEEECTTSEEEEECC-TTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred ecCCccCCceEEEEcCC-CCEEEEEcCCCeEEEECC-CCCc-eEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 34444445678889998 887888888999999987 3332 222221 113578999997
Q ss_pred -CCCEEEEEecCCeEEEEECCCCcEEEEec--CC---CcceEEEEec-CCCCCcEEEEEEC-----------------CC
Q 007768 354 -DGTKFLTASYDKNIKYWDTETGQVIRTFS--TG---KIPYVVKLNP-DDDKQNILLAGMS-----------------DK 409 (590)
Q Consensus 354 -dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~--~~---~~~~~~~~~~-~~~~~~~lvsg~~-----------------dg 409 (590)
+++ |+.+...+.|.++|..++....... .+ ..+..+.+.+ ++ +++++-.. ++
T Consensus 90 ~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G---~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 90 QNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG---IVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp TTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC---CEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred CCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC---EEEEECCcccccccccceehcccCCCc
Confidence 554 5555555668888887654322111 11 1234455544 33 45554322 36
Q ss_pred eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE-eCCCcEEEEECCCCc--EEEEeecCCCCceeEEEEcCCCCE
Q 007768 410 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 410 ~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~-s~Dg~I~iwdl~~~~--~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
.|..||..+++...... .....+.|+++++++.|+.+ +..+.|.+|++.... ....+.. ... ...+++.++|++
T Consensus 166 ~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l 242 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHF 242 (322)
T ss_dssp EEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCE
T ss_pred eEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCE
Confidence 79999987776433222 23446789999999866555 556889999987421 1122211 122 678999999987
Q ss_pred EEEEEc----------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007768 487 LAAQSL----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 487 la~~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.++... .+.|..++.. +..+..+....+.. ...++.+++ .+++++++....+.|..+++.
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~-~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA-GEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT-TSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred EEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc-cccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 666554 4668888764 33332222211111 123444555 456666666677888888875
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.63 E-value=6.9e-06 Score=79.52 Aligned_cols=190 Identities=11% Similarity=0.125 Sum_probs=133.9
Q ss_pred ceEEEecCCCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE-EEecCCe
Q 007768 290 RLVHTWSGHTK--GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKN 366 (590)
Q Consensus 290 ~~i~~l~gH~~--~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~ 366 (590)
+++.++ .|.. -...|.|+. +.++++.+.+|.|+++|+ .+++.++.+ -..........+++..|+ +.-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~-~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSL-ESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEETTTTEEEECCS-SCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEEC--CEEEEEcCCCCEEEEEEC-CCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCE
Confidence 566777 4443 357888873 678888889999999999 677777776 223333322333444444 4446799
Q ss_pred EEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC-----CceeEEEEeCCC
Q 007768 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-----GAVNTITFVDSN 441 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~-----~~V~~i~~~p~~ 441 (590)
+.+||..+.+.+.++........++ +++ ..|+.+..++.|+++|..+.+.+..+.-.. ..++.+.|. +|
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg---~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEGWGLC--YWN---GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCCCCEE--EET---TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEECCcCcEEEEEeCCCceeEEe--cCC---CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence 9999999999999998765555444 332 345556679999999999998888775322 245778887 67
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecC------------CCCceeEEEEcCCCCEEEEEE
Q 007768 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~la~~s 491 (590)
..++..-.+..|.+.|..+++.+..+... ...-...|+++|+++.|++.+
T Consensus 192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 66655557889999999999988887532 123568899999876666554
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=3.2e-05 Score=84.80 Aligned_cols=259 Identities=14% Similarity=0.159 Sum_probs=157.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccCCC----CeE-EEEEcc---CCC-EEEEEe------cCCeEEEEECCCCc
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK----AVR-DISFCN---DGT-KFLTAS------YDKNIKYWDTETGQ 376 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~----~V~-~l~fsp---dg~-~l~s~s------~Dg~I~vWd~~t~~ 376 (590)
+..|+.++.|+.|..+|. .+++.+..+..... .+. .-.... +|+ .+++++ .++.|..+|..+|+
T Consensus 117 ~~~v~~~t~dg~l~AlD~-~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNK-NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEES-SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEEC-CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 467888889999999999 67877766543221 111 111111 233 566654 37899999999999
Q ss_pred EEEEecCCCcce------------------------------------------EEEEecCCCCCcEEEEEEC-------
Q 007768 377 VIRTFSTGKIPY------------------------------------------VVKLNPDDDKQNILLAGMS------- 407 (590)
Q Consensus 377 ~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~lvsg~~------- 407 (590)
.+.......... ..++.+ ...+++++..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~---~~g~vyv~~gn~~~~~~ 272 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA---ETNTIIVGAGNPGPWNT 272 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET---TTTEEEEEECCBSSSCG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC---CCCEEEEeCCCCCcccC
Confidence 988765421100 011111 2245666553
Q ss_pred -------------C----CeEEEEeCCCCceEEEEcC--cCC----ceeE-EEEe---CCCC---EEEEEeCCCcEEEEE
Q 007768 408 -------------D----KKIVQWDMNTKEITQEYDQ--HLG----AVNT-ITFV---DSNR---RFVTSSDDKSLRVWE 457 (590)
Q Consensus 408 -------------d----g~I~iwD~~t~~~~~~~~~--h~~----~V~~-i~~~---p~~~---~l~s~s~Dg~I~iwd 457 (590)
| +.|..+|..+|+.+..++. |.. .+.. +.+. .+|+ .++.++.+|.++++|
T Consensus 273 ~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 273 WARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred cccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEE
Confidence 2 6899999999999988753 321 1111 2222 3564 688899999999999
Q ss_pred CCCCcEEEEeecCCC------------Cc--------------------------------eeEEEEcCCCCEEEEEEc-
Q 007768 458 FGIPVVIKYISEPHM------------HS--------------------------------MPSISLHPNTNWLAAQSL- 492 (590)
Q Consensus 458 l~~~~~~~~~~~~~~------------~~--------------------------------i~~i~~sp~g~~la~~s~- 492 (590)
..+++.+........ .+ ...++++|+..++++...
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 998887765543210 00 013566776655555432
Q ss_pred --------------------------------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC
Q 007768 493 --------------------------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 493 --------------------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
+|.|..||+.+++.+-..... .....+. +...+.+++.|+.|
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~-----~~tagglvf~g~~d 506 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGV-----LATAGNLVFTGTGD 506 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCC-----EEETTTEEEEECTT
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccc-----eEeCCCEEEEECCC
Confidence 477888888877655433321 1111111 11246788889999
Q ss_pred CcEEEEeCCCCeEEEEEecCCCcE-EEEEEcCCCCCEEEEE
Q 007768 541 GKCWFWDWKSCKVFRTLKCHEGVC-IGCEWHPLEQSKVATC 580 (590)
Q Consensus 541 g~I~iwd~~t~~~~~~l~~h~~~V-~~v~~sp~~~~~l~s~ 580 (590)
|.|+.||.++|+.+.+++...+.+ .-+.|..++..+|++.
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 999999999999999998654422 1255555344455443
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=0.0001 Score=83.78 Aligned_cols=278 Identities=8% Similarity=0.028 Sum_probs=165.2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec--------------cCCCCeEEEEEccCCCEEEEEecC
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--------------GHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--------------~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
...|.+|...++ + .|..|+..+-|.+++. .......... -....|.++...++|. |..|+.+
T Consensus 257 ~~~i~~i~~d~~-g-~lWigt~~~Gl~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKD-N-KLWIATELNGIMILDL-QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTT-S-EEEEEESSSCEEEEET-TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBS
T ss_pred CceEEEEEECCC-C-CEEEEeCCCCeEEECC-CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecC
Confidence 456999988776 4 4666776556888887 3332221111 1345799999998886 6667777
Q ss_pred CeEEEEECCCCcEEEEec-------CC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE---cCcCCcee
Q 007768 365 KNIKYWDTETGQVIRTFS-------TG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVN 433 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~---~~h~~~V~ 433 (590)
+-|..++..+........ .. ....+.++..+.. ..|.+|+.++.|..||..++...... ......|.
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ--GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT--SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC--CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 889999987665433211 00 1223444444433 23777887778999998765432211 12345788
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE--PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
++...+++.+ ..|+.++-|..++..+.... .+.. .....|.++...+++. |.+++. +-|.+|+..+........
T Consensus 411 ~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 411 CSLKDSEGNL-WFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEECTTSCE-EEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEEC
T ss_pred EEEECCCCCE-EEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEeccc
Confidence 8888777754 44666667888987766443 3321 2345688888888776 444555 568899976543211111
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEec----CCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC----HEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~----h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
..........+.++...++|.+.+.....| |..||..+++.. .+.. ....|.++...+ ++.+.+ ++.+|.|.
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~-~g~lWi-~T~~Glv~ 562 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSS-KGQMWL-ATGEGLVC 562 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECT-TSCEEE-EETTEEEE
T ss_pred CcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECC-CCCEEE-EECCCceE
Confidence 000111135678899999998665544344 888998776543 3331 234688888877 454444 44466646
Q ss_pred EcC
Q 007768 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
.||
T Consensus 563 ~~d 565 (781)
T 3v9f_A 563 FPS 565 (781)
T ss_dssp ESC
T ss_pred EEC
Confidence 654
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.49 E-value=0.00019 Score=73.35 Aligned_cols=247 Identities=7% Similarity=-0.034 Sum_probs=151.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCCCcE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQV 377 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~ 377 (590)
....+|.+..+. + +|+.+. ...|+..++ ..... ..+......+..++|++....|+ +-...+.|..+++..+..
T Consensus 33 ~d~~~C~~~~~~-~-~ll~~~-~~~I~~i~~-~g~~~-~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 33 PDRRSCKALGPE-P-VLLFAN-RIDIRQVLP-HRSEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TTSSCEEESSSC-C-EEEEEC-BSCEEEECT-TSCCE-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCcccccccC-c-eeEeec-ccceEEEeC-CCCee-EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 344566666554 4 333333 345777777 23333 33333345588999997555555 444678899999987664
Q ss_pred EEEecC-CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe-CC-CcEE
Q 007768 378 IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DD-KSLR 454 (590)
Q Consensus 378 ~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~D-g~I~ 454 (590)
...+.. ...+..+++.+.. ++++++-...+.|.++++........+.........|++.|.+..|+.+. .. +.|.
T Consensus 108 ~~~~~~~~~~p~glavd~~~--g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVH--DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp EEEECSSCSCCCEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eEEEeCCCCCccEEEEecCC--CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 443332 2345566776543 36677777788999999876544444444456678999998666555544 44 6788
Q ss_pred EEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007768 455 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
.+++...... .+..........|+++|++..|+.+. ..+.|..+++......... ... ......+++ ..+.+
T Consensus 186 r~~~dG~~~~-~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~---~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 186 ASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI---SQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEETTSCSCE-ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSS--CSSEEEEEE-ETTEE
T ss_pred EEeCCCCCcE-EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE---eCC--CCCceEEEE-ECCEE
Confidence 8887654332 22222344578899998777666655 4578999998653221111 111 123445677 34555
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEEec
Q 007768 534 VMSGDGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 534 l~sgs~dg~I~iwd~~t~~~~~~l~~ 559 (590)
.++-...+.|..++..+|+.+..+..
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCCeEEEEEccCCCccEEecc
Confidence 66666778899998777776666653
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.48 E-value=0.00017 Score=74.83 Aligned_cols=254 Identities=7% Similarity=-0.046 Sum_probs=155.1
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCCCcEEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~ 379 (590)
.-+|.+..+. + +|+.+. ...|+..++ ........+ .....+..++|++.+..|+ +-...+.|..+++..+....
T Consensus 78 ~~~C~~~~~~-~-~l~~~~-~~~I~~i~~-~~~~~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 78 RRSCKALGPE-P-VLLFAN-RIDIRQVLP-HRSEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SSCEEECSSC-C-EEEEEC-BSCEEEECT-TSCCCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CCeECCcccc-c-eeEeec-Cccceeecc-CCCcEEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 3445555543 3 343333 356888887 333333333 3445688999997555454 54567899999998776544
Q ss_pred EecCC-CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-C-CcEEEE
Q 007768 380 TFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-D-KSLRVW 456 (590)
Q Consensus 380 ~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-D-g~I~iw 456 (590)
.+..+ ..+..+++.+.. +.++++-...+.|.++++........+.........|++.|.+..|+.+.. . +.|..+
T Consensus 153 ~~~~~~~~p~glavd~~~--g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVH--DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp EECSSCSCCCCEEEETTT--TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred EEeCCCCCccEEEEEeCC--CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 43322 344556666543 366777777889999998765444444445567789999987766655543 3 678888
Q ss_pred ECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007768 457 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 457 dl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
++......... .........|+++|++..|+.+. ..+.|..+++........ .... ......+++ ..+.+++
T Consensus 231 ~~dG~~~~~~~-~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~---~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 231 SMDGSGRRIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV---ISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp ETTSCSCEEEE-CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE---ECSS--CSSEEEEEE-ETTEEEE
T ss_pred eCCCCCcEEEE-ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE---EECC--CCCceEEEE-ECCEEEE
Confidence 88654433333 23344578899998776666654 457899998865322111 1111 123445777 3455666
Q ss_pred EEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEE
Q 007768 536 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 536 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+-...+.|..++..+++.+..+........+++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 666788899999777777766654333333443
No 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=5.9e-05 Score=79.48 Aligned_cols=240 Identities=10% Similarity=0.008 Sum_probs=142.2
Q ss_pred CeEEEEEcc-CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCC----eEEEEeCCCC
Q 007768 345 AVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK----KIVQWDMNTK 419 (590)
Q Consensus 345 ~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg----~I~iwD~~t~ 419 (590)
....|+|+| ++..|+.+...+.|+.+|+.++...........+..+++.+.+. .++++...++ .+..++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~--~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEAD--SMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSS--EEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCC--EEEEEeCCCCcccceEEEEeC-CC
Confidence 457899997 45566666655889999998877666555556677777776542 3555544322 3444443 23
Q ss_pred ceE--EEEcCcCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEE-EcCCe
Q 007768 420 EIT--QEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQ 495 (590)
Q Consensus 420 ~~~--~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~-s~dg~ 495 (590)
... ..+. .......++++| ++.++++-...+.|..++....................++|+|++++|+++ ...+.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 221 2222 234467888999 676666766788999999887654333333333456789999999965555 45688
Q ss_pred EEEEEcCCc-eeecccccccC------cc-------cccceE-EEEEc--------CCCCEEEEEcCCCcEEEEeCCCCe
Q 007768 496 ILIYSTRER-FQLNKKKRFAG------HI-------VAGYAC-QVNFS--------PDGRFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 496 I~iwd~~~~-~~~~~~~~~~~------~~-------~~~~v~-~v~~s--------pdg~~l~sgs~dg~I~iwd~~t~~ 552 (590)
|..++.... ..+.....+.+ .. .-.... .++.. ++|.+.++-...+.|+.++ .++.
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence 999886532 11100011110 00 001122 34443 4466666666778899998 5665
Q ss_pred EEEEEec----C----C---------CcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 553 VFRTLKC----H----E---------GVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 553 ~~~~l~~----h----~---------~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.....-. . . .....+++.|+++.++++-.....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 4433321 0 1 1468999998546566665566677764
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.0014 Score=65.65 Aligned_cols=228 Identities=6% Similarity=-0.076 Sum_probs=140.1
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCC----CcEEEEecC-CCcceEEEEecC
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTET----GQVIRTFST-GKIPYVVKLNPD 395 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t----~~~~~~~~~-~~~~~~~~~~~~ 395 (590)
..|+..++ ........+. ....+..++|++.+..|+ +-...+.|..+++.. ......+.. ...+..+++.+.
T Consensus 10 ~~I~~i~~-~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTL-DRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEET-TSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEEC-CCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 56888888 3444444333 445678999998655554 445568999999876 222222322 234566777654
Q ss_pred CCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC--CcEEEEECCCCcEEEEeecCCCC
Q 007768 396 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD--KSLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D--g~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
. ++++++-...+.|.++++........+.........+++.|.+..|+.+... +.|..+++..... ..+......
T Consensus 88 ~--~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~~~~ 164 (316)
T 1ijq_A 88 H--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQ 164 (316)
T ss_dssp T--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCS
T ss_pred C--CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEECCCC
Confidence 3 3566776778999999987654433343345577899999876666555543 6788888765433 223222345
Q ss_pred ceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007768 474 SMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~ 552 (590)
....+++++++..|+.+. ..+.|..+++...... .+...... ......+++. .+.++++-...+.|..++..+++
T Consensus 165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~--~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKR--LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTT--TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCc--cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 678999999877776665 4578999998653221 11111011 1233456774 35556666677899999987777
Q ss_pred EEEEEe
Q 007768 553 VFRTLK 558 (590)
Q Consensus 553 ~~~~l~ 558 (590)
.+..+.
T Consensus 241 ~~~~i~ 246 (316)
T 1ijq_A 241 DVNLLA 246 (316)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 665554
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=6.2e-06 Score=91.97 Aligned_cols=271 Identities=12% Similarity=0.033 Sum_probs=149.1
Q ss_pred EEEEcCCCCCEEEEEeCCC-----------cEEEEecCCCCe--eEEEe-ccCCCCeEEEEEccCCCEEEEEec-CCeEE
Q 007768 304 AIRFFPKYGHLILSAGMDT-----------KVKIWDVVNSGK--CMRTY-MGHSKAVRDISFCNDGTKFLTASY-DKNIK 368 (590)
Q Consensus 304 ~l~~sp~~g~~L~sgs~Dg-----------~I~iWd~~~~~~--~~~~~-~~h~~~V~~l~fspdg~~l~s~s~-Dg~I~ 368 (590)
++++.+.++++++.|+.+. .+.+||.. ..+ .+..+ ..+.....++++..++++++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~-t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS-TGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT-TCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCC-CCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 4566773388888887653 57889984 332 22222 223334456788889999999985 46899
Q ss_pred EEECCCCcEEEEec--CCCcceEEEEecCCCCCcEEEEEE-CC-----CeEEEEeCCCCceEEEE----cCcCCceeEEE
Q 007768 369 YWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM-SD-----KKIVQWDMNTKEITQEY----DQHLGAVNTIT 436 (590)
Q Consensus 369 vWd~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~-~d-----g~I~iwD~~t~~~~~~~----~~h~~~V~~i~ 436 (590)
+||..+.+....-. .........+.+++ .+++.|+ .+ ..+.+||..+.+-...- ......-....
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg---~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDG---RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTS---CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred EecCcCCceeECCCCCccccccceEEecCC---eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccce
Confidence 99998876554322 22222334444333 5788887 34 57999999887533320 00000000011
Q ss_pred EeCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeecCC--------CCceeEEEEc-CCCCEEEEEEcCC----
Q 007768 437 FVDSNRRFVTSSDD---------KSLRVWEFGIPVVIKYISEPH--------MHSMPSISLH-PNTNWLAAQSLDN---- 494 (590)
Q Consensus 437 ~~p~~~~l~s~s~D---------g~I~iwdl~~~~~~~~~~~~~--------~~~i~~i~~s-p~g~~la~~s~dg---- 494 (590)
+..++..++.++.+ ..+..||.............. ...-.++.+. .+++++++|+.++
T Consensus 346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 22344555555444 356788887765443322111 1122334443 3677888877542
Q ss_pred -------eEEEEEcCCceeeccc-ccccCcccccceEEEEEcCCCCEEEEEcCC-----------CcEEEEeCCCCeEEE
Q 007768 495 -------QILIYSTRERFQLNKK-KRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----------GKCWFWDWKSCKVFR 555 (590)
Q Consensus 495 -------~I~iwd~~~~~~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----------g~I~iwd~~t~~~~~ 555 (590)
.|.+||..+..-.... ..+.. ...-.+++..|+|++++.|+.+ ..+.+||..+.+-..
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp~---~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFASNGLYF---ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECTTCCSS---CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred CcCCcceEEEcCCCCCCCeeEEccCCCCC---CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence 5777776553211111 01111 1112245677899999998754 468999987755322
Q ss_pred --EEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 556 --TLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 556 --~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
.+........++.+.| ++++++.||.
T Consensus 503 ~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 503 QNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred cCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 1111122223455667 6778888884
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00013 Score=76.83 Aligned_cols=241 Identities=12% Similarity=0.146 Sum_probs=137.1
Q ss_pred CeeEEEEcC-CCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC-C----eEEEEECCC
Q 007768 301 GVSAIRFFP-KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-K----NIKYWDTET 374 (590)
Q Consensus 301 ~V~~l~~sp-~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D-g----~I~vWd~~t 374 (590)
....|+|+| + +..|+.+...+.|+.+|+ ..+. +..+.........|+|+++|++|+.+... + .+.+.+. .
T Consensus 138 ~P~~lavdp~~-~g~Lyv~d~~~~I~~id~-~~~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKN-HNHLYLVGEQHPTRLIDF-EKEY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CCCEEEEETTE-EEEEEEEEBTEEEEEEET-TTTE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCEEEECCCC-CCeEEEEeCCCcEEEEEC-CCCE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 457889998 4 344555554488888998 3333 44444455678999999999967666542 1 3333443 2
Q ss_pred CcEE--EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc-CcCCceeEEEEeCCCCEE-EEEeCC
Q 007768 375 GQVI--RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRF-VTSSDD 450 (590)
Q Consensus 375 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~-~h~~~V~~i~~~p~~~~l-~s~s~D 450 (590)
+... ..+.....+..+++.+. .+.++++-..++.|+.++...+....... ........|+|+|++++| ++-...
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~--~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPI--NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTT--TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred CceeeeeeeccCCCceEEEEeCC--CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 2221 22323344555666663 33667777778999999998776532222 122456789999999954 455567
Q ss_pred CcEEEEECCCC--cE--EEEeecC--------------CCCcee-EEEEc--------CCCCEEEEEEcCCeEEEEEcCC
Q 007768 451 KSLRVWEFGIP--VV--IKYISEP--------------HMHSMP-SISLH--------PNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 451 g~I~iwdl~~~--~~--~~~~~~~--------------~~~~i~-~i~~s--------p~g~~la~~s~dg~I~iwd~~~ 503 (590)
+.|..++.... .. +..+... ...... .+++. +++.++++-...+.|+.++..
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~- 370 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ- 370 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-
Confidence 88999886532 11 1111110 011122 45553 345555555566788888743
Q ss_pred ceeeccccc----ccCcc--------cccceEEEEEcCC-CCEEEEEcCCCcEEEEeC
Q 007768 504 RFQLNKKKR----FAGHI--------VAGYACQVNFSPD-GRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 504 ~~~~~~~~~----~~~~~--------~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~ 548 (590)
+........ ..+.. .-.....++++|+ |.++++-..+.+|+.++.
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 322111110 11100 0124567999994 655555556777887764
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=0.00051 Score=77.98 Aligned_cols=273 Identities=14% Similarity=0.032 Sum_probs=159.6
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec-------cCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-------~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
..|.+|...++ +.+.+ |+.. -|.+||. ..+....... .....|.++...++|. |..|+..+-|.++|.
T Consensus 211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNA-NTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTT-CCEEE-EETT-EEEEEET-TTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred CceeEEEEcCC-CCEEE-EeCC-cHheECC-CCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence 56889988777 55444 4555 5888987 3333322111 1245699999988775 555666567889998
Q ss_pred CCCcEEEEec-------C------CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc---------CcCC
Q 007768 373 ETGQVIRTFS-------T------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---------QHLG 430 (590)
Q Consensus 373 ~t~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~---------~h~~ 430 (590)
.++....... . -....+.++..+.. ..|.+|+.++.|..|+..+........ ....
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF--NNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK 363 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSS--CCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC--CCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence 8765433221 0 01123444444433 347788888889999987664332211 1235
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee--cCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007768 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
.|.++...+++. |..|+.++-|.+|+..+........ ......|.++...+++.+. +|+.++-|..|+..++....
T Consensus 364 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 364 VVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp CEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEE
T ss_pred ceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEE
Confidence 688888887775 4556655668889876543221110 1234568888888777644 46776778999876543221
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC-----CCcEEEEEEcCCCCCEEEEEeC-
Q 007768 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-----EGVCIGCEWHPLEQSKVATCGW- 582 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-----~~~V~~v~~sp~~~~~l~s~g~- 582 (590)
.... ......|.++...++|.+.+ |+. +-|.+||..+++........ ...|.++...+ ++.+. .|+.
T Consensus 442 -~~~~--~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lW-igt~~ 514 (781)
T 3v9f_A 442 -IELE--KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFW-IGTFG 514 (781)
T ss_dssp -CCST--TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEE-EEESS
T ss_pred -eccC--CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEE-EEEcC
Confidence 1110 11235677888888887555 444 56999998876654433222 35688888877 45444 4444
Q ss_pred CCcEEEc
Q 007768 583 DGLIKYW 589 (590)
Q Consensus 583 Dg~I~iW 589 (590)
.| |..|
T Consensus 515 ~G-l~~~ 520 (781)
T 3v9f_A 515 GG-VGIY 520 (781)
T ss_dssp SC-EEEE
T ss_pred CC-EEEE
Confidence 44 4444
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.37 E-value=0.0013 Score=68.39 Aligned_cols=245 Identities=6% Similarity=-0.086 Sum_probs=150.0
Q ss_pred CEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCC----cEEEEec-CCCc
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETG----QVIRTFS-TGKI 386 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I~vWd~~t~----~~~~~~~-~~~~ 386 (590)
.+|+.+. ...|+..++. ..... .+......+..|+|++.+..|+.+ ...+.|..+++... .....+. ....
T Consensus 84 ~~ll~~~-~~~I~~i~l~-~~~~~-~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLD-RSEYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp CEEEEEE-TTEEEEECTT-SCSCE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred ceeEEec-cceeEEEccC-Cccee-EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 3444444 3678888883 33332 333445678999999865555544 45688999998752 2222222 2344
Q ss_pred ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEE
Q 007768 387 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVI 464 (590)
Q Consensus 387 ~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~ 464 (590)
+..+++.+.. ++++++-...+.|.+.++........+.........|++.|.+.+|+.+.. .+.|...++......
T Consensus 161 p~glavD~~~--~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 161 PDGLAVDWIH--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp EEEEEEETTT--TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred cccEEEEecC--CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 5566666643 367777777889999999876554455445566889999997766666553 368888888755433
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
..+ .........|++++.+..|+.+. ..+.|..+++......... ...+. ......+++. .+.++++-...+.|
T Consensus 239 ~~~-~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~~~--l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 239 SLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL-EDEKR--LAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp EEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE-ECSST--TSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred EEE-ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE-eCCCC--CCCCEEEEEe-CCEEEEecCCCCeE
Confidence 333 23345678999998877776665 4578999998654322111 11111 1223356663 34455566677889
Q ss_pred EEEeCCCCeEEEEEecCCCcEEEE
Q 007768 544 WFWDWKSCKVFRTLKCHEGVCIGC 567 (590)
Q Consensus 544 ~iwd~~t~~~~~~l~~h~~~V~~v 567 (590)
..+|..+|+.+..+........++
T Consensus 314 ~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEEESSSCCCCEEEECSCSCEEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceE
Confidence 999988887766665433334444
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.33 E-value=0.0036 Score=63.05 Aligned_cols=272 Identities=10% Similarity=0.061 Sum_probs=147.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec----cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 374 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t 374 (590)
...+.+|.|.+. +..++ ++..|.|.. .. ..++.-.... .....+.+|.|.+ +. ++.++..+.|.. ....
T Consensus 35 ~~~~~~v~~~~~-~~~~~-~G~~g~i~~-s~-DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 35 TATILDMSFIDR-HHGWL-VGVNATLME-TR-DGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDG 107 (327)
T ss_dssp SSCEEEEEESSS-SCEEE-EETTTEEEE-ES-STTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESST
T ss_pred CCcEEEEEECCC-CcEEE-EcCCCeEEE-eC-CCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCC
Confidence 346899998876 66666 455675532 22 3343222221 1244688999976 44 444555665543 3333
Q ss_pred CcEEEEecC----CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEE-EEcCcCCceeEEEEeCCCCEEEEEeC
Q 007768 375 GQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 375 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~-~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
|+.-..... ......+.+... .. +++++.++.|+. ....++.-. ....+...+..+.+.+++.+++++.
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~---~~-~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~- 181 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGN---GS-AEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS- 181 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEET---TE-EEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-
T ss_pred CCCceECccccCCCCCeEEEEEECC---CC-EEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-
Confidence 443222221 122333333322 23 444445665433 222232222 2234556788999999887776665
Q ss_pred CCcEEE-EECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007768 450 DKSLRV-WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 450 Dg~I~i-wdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
.|.++. +|- .+.....+..+....+..+.+.+++.+++ ++.+|.+++.+...+......... .......+..+.+.
T Consensus 182 ~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~-~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 182 RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSP-LRRNSVGFLDLAYR 258 (327)
T ss_dssp TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCT-TSSCCSCEEEEEES
T ss_pred CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCC-cccCCcceEEEEec
Confidence 454443 332 12222222334556788899999887654 456788777643323332222110 00011236678899
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeEEEEEec---CCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 529 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
+++.+++++. +|.| ++....|+.-..+.. +...+.++.|.+ + ..++.++.+|.|.-++
T Consensus 259 ~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~-~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 259 TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P-DQGFILGQKGILLRYV 319 (327)
T ss_dssp SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-TEEEEECSTTEEEEEC
T ss_pred CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-CceEEEcCCceEEEEc
Confidence 8888777765 6666 455555655444442 234578888875 3 4577888899887654
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.32 E-value=0.0002 Score=75.38 Aligned_cols=239 Identities=8% Similarity=-0.043 Sum_probs=142.3
Q ss_pred CeEEEEEccC--CCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECC----CeEEEEeCCC
Q 007768 345 AVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD----KKIVQWDMNT 418 (590)
Q Consensus 345 ~V~~l~fspd--g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d----g~I~iwD~~t 418 (590)
....|+|+|+ +..|+.+...+.|+.+|..++...........+..+++.+++ .++++.... ..+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG---~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG---DMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC---CEEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC---CEEEEcCCCCcccceEEEEECCC
Confidence 4578999984 445555554489999999888877666555567777777654 344444321 1244444322
Q ss_pred Cce-EEEEcCcCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCCceeEEEEcCCCCEEEEEE-cCC
Q 007768 419 KEI-TQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYI-SEPHMHSMPSISLHPNTNWLAAQS-LDN 494 (590)
Q Consensus 419 ~~~-~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~-~~~~~~~i~~i~~sp~g~~la~~s-~dg 494 (590)
+.. ...+. .......+++.| ++.++++-..++.|+.++...+.....+ ..........++++|++++|+++. ..+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211 01111 234557788999 6666666667788999998766552222 222222334699999999665554 567
Q ss_pred eEEEEEcCCc-eeecccccccC------cc-------cccceEEEEE---------cCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 495 QILIYSTRER-FQLNKKKRFAG------HI-------VAGYACQVNF---------SPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 495 ~I~iwd~~~~-~~~~~~~~~~~------~~-------~~~~v~~v~~---------spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
.|+.++.... ..+.....+.+ .. .-.....+++ .++|.+.++-...+.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 8999886521 11100001111 00 0123456888 778877777777889999984 66
Q ss_pred eEEEEEecC------------------CCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 552 KVFRTLKCH------------------EGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 552 ~~~~~l~~h------------------~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
... ++.+. -....+|++.|.++.++++=.....|+.+
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 443 33321 01367899995366666665566777765
No 274
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.31 E-value=0.00034 Score=73.65 Aligned_cols=242 Identities=9% Similarity=0.068 Sum_probs=136.9
Q ss_pred CeeEEEEcCC-CCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCC
Q 007768 301 GVSAIRFFPK-YGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-----NIKYWDTET 374 (590)
Q Consensus 301 ~V~~l~~sp~-~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg-----~I~vWd~~t 374 (590)
....|+|.|+ ....|+.+...+.|+.++. ..+.. ..+........+|+|+++|+ |+.+...+ .+...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~-~~g~v-~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDF-VNQYV-DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEET-TTTEE-EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEEC-CCCEE-EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 2344555544488999998 34444 44444556789999999999 44444321 233333222
Q ss_pred CcE-EEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEE-c-CcCCceeEEEEeCCCCEEEE-EeCC
Q 007768 375 GQV-IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-D-QHLGAVNTITFVDSNRRFVT-SSDD 450 (590)
Q Consensus 375 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~-~-~h~~~V~~i~~~p~~~~l~s-~s~D 450 (590)
+.. ...+.....+..+++.+. .+.++++-..++.|+.+|..++.....+ . .....-..|+|+|++++|+. -...
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~--~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQ--NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTT--TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CeeccccccccCCCCEEEEeCC--CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 111 011222333444556552 3356666667889999999877663322 1 11223346999999995554 4556
Q ss_pred CcEEEEECCC--CcE--EEEeec--C------------CCCceeEEEE---------cCCCCEEEEEEcCCeEEEEEcCC
Q 007768 451 KSLRVWEFGI--PVV--IKYISE--P------------HMHSMPSISL---------HPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 451 g~I~iwdl~~--~~~--~~~~~~--~------------~~~~i~~i~~---------sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
+.|+.+++.. ... ...+.. . .......+++ .+++.++++-...+.|+.++..
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~- 373 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE- 373 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-
Confidence 7899988752 211 111111 0 1123556888 6777777776677889999853
Q ss_pred ceeecccccc----cCc--------ccccceEEEEEc-CCCCEEEEEcCCCcEEEEeC
Q 007768 504 RFQLNKKKRF----AGH--------IVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 504 ~~~~~~~~~~----~~~--------~~~~~v~~v~~s-pdg~~l~sgs~dg~I~iwd~ 548 (590)
+........- .+. ..-.....|+++ ++|.++++-..+++|+.+++
T Consensus 374 G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 374 GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 2221111000 000 001235678888 56666666666777887765
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.27 E-value=0.001 Score=67.73 Aligned_cols=230 Identities=10% Similarity=-0.016 Sum_probs=139.7
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEc
Q 007768 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 347 ~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~ 426 (590)
+|.+..+++ +|+.+ ....|+..++........+.....+..+.+.+.. +.++++-...+.|+.+++........+.
T Consensus 37 ~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~--~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRR--ELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccCc-eeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccc--cEEEEEeccCCceEEEecCCCCceEEEe
Confidence 344444432 33333 3356888888776665555555556666666543 3667776778899999998776544444
Q ss_pred CcCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc-C-CeEEEEEcCC
Q 007768 427 QHLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D-NQILIYSTRE 503 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~-d-g~I~iwd~~~ 503 (590)
........+++.+.+..| ++-...+.|.+.++........+ .........++++|.+..|+.... . +.|..+++..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 444566889999755554 55556788999998765433333 234456789999997666655543 4 7788888765
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 504 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
....... ... ......++|+|++..|+.++ ..+.|..+|+........+...-....++++. ++.++++-..
T Consensus 192 ~~~~~~~---~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~ 264 (349)
T 3v64_C 192 SGRRIIA---DTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWH 264 (349)
T ss_dssp CSCEESC---CSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETT
T ss_pred CCcEEEE---ECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCC
Confidence 3222111 111 23456799998777666554 56789999986543333333334456777773 3444444444
Q ss_pred CCcEEE
Q 007768 583 DGLIKY 588 (590)
Q Consensus 583 Dg~I~i 588 (590)
.+.|..
T Consensus 265 ~~~V~~ 270 (349)
T 3v64_C 265 TKSINS 270 (349)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 455543
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.26 E-value=0.0014 Score=65.82 Aligned_cols=221 Identities=7% Similarity=-0.063 Sum_probs=135.3
Q ss_pred EEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC----CceEEEEcCcCCcee
Q 007768 358 FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVN 433 (590)
Q Consensus 358 l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t----~~~~~~~~~h~~~V~ 433 (590)
|+.+. ...|+..|+.+......+.....+..+.+.+.. +.++++-...+.|..+++.. ......+........
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~--~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCC--CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 44433 357899999988776666555666677776543 35777777789999999876 222233333334568
Q ss_pred EEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC--CeEEEEEcCCceeeccc
Q 007768 434 TITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--NQILIYSTRERFQLNKK 510 (590)
Q Consensus 434 ~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d--g~I~iwd~~~~~~~~~~ 510 (590)
.|++.+.+..| ++-...+.|.++++........+. ........++++|.+..|+.+... +.|..+++....... +
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-L 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-E
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-E
Confidence 89998755544 555667899999987654433332 244567899999977766665543 688888876432211 1
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEec--CCCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 511 KRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
.... -.....+++++++..|+.++ ..+.|..+|+........+.. .-....++++. ++.++++-...+.|.
T Consensus 159 --~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 159 --VTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 232 (316)
T ss_dssp --ECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred --EECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEE
Confidence 1111 23456799999877766555 567899999874332222222 12345677774 344555554555665
Q ss_pred Ec
Q 007768 588 YW 589 (590)
Q Consensus 588 iW 589 (590)
.+
T Consensus 233 ~~ 234 (316)
T 1ijq_A 233 SA 234 (316)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 277
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.24 E-value=0.0031 Score=62.42 Aligned_cols=252 Identities=11% Similarity=0.108 Sum_probs=159.5
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcE
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
..|.|-|+.+.....+.-..-.. .-.+|..+.||.-. ...+.|+|+++.+.++.+...... +-|.|.... .
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ads----AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~V--vfWkWis~~--~ 119 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDV--TFWKWISLN--T 119 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCSE----EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCE--EEEEECSSS--E
T ss_pred CEEEEEECCCCCCccccccccce----eeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCcc--EEEEecCCC--e
Confidence 47888899665555554433333 33588777777665 689999999999999998876644 444444442 3
Q ss_pred EEEEECCCeEEEEeCCC-CceEEEEcCcC----CceeEEEEeCCCCEEEEEeC-------CCcEEEEECCCCcEEEEeec
Q 007768 402 LLAGMSDKKIVQWDMNT-KEITQEYDQHL----GAVNTITFVDSNRRFVTSSD-------DKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t-~~~~~~~~~h~----~~V~~i~~~p~~~~l~s~s~-------Dg~I~iwdl~~~~~~~~~~~ 469 (590)
|...+ +..|+.|++.. ..++..+..|. ..|..-..+++.++++..+- .|.+.+|....... ...+
T Consensus 120 L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~ie 196 (365)
T 2xzh_A 120 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIE 196 (365)
T ss_dssp EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--EEEC
T ss_pred EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc--ceee
Confidence 33333 57899999974 35666666653 45777777888898776542 36788998765532 2333
Q ss_pred CCCCceeEEEEcCC---CCEEEEEEcC---CeEEEEEcCCc---eeecccc----cccCcccccceEEEEEcCCCCEEEE
Q 007768 470 PHMHSMPSISLHPN---TNWLAAQSLD---NQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 470 ~~~~~i~~i~~sp~---g~~la~~s~d---g~I~iwd~~~~---~~~~~~~----~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
+|......+.+..+ ..+|+.+... +.++|.++... ......+ .+..........++..|+.-..++.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 44433332222211 1234444332 58899988432 1111111 1222222344556888998889999
Q ss_pred EcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 537 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 537 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
-+.-|.|++||+.++.++..-+.....|...+-+. ...=++.....|.|
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~-~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQV 325 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEG-GGTEEEEEETTCEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccC-CCCcEEEEcCCCEE
Confidence 99999999999999999988887777777666654 33345555566655
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.21 E-value=0.00043 Score=69.69 Aligned_cols=229 Identities=9% Similarity=-0.020 Sum_probs=139.7
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCcEE--EEecCCCcceEEEEecCCC
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVI--RTFSTGKIPYVVKLNPDDD 397 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~--~~~~~~~~~~~~~~~~~~~ 397 (590)
...|+..++.........+......+..++|.+.+ .++++-...+.|..+++..+... .....-..+..+++.+..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~- 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG- 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-
Confidence 46788888843321222222223456789999854 44555556788999998766321 111122345566666533
Q ss_pred CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEEEeecCCCCce
Q 007768 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHMHSM 475 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~~~~~~~~~~~i 475 (590)
++++++-...+.|.++++........+.........|++.|.+..|+.+.. .+.|...++........+ .......
T Consensus 91 -g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~~l~~P 168 (318)
T 3sov_A 91 -EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSEIYWP 168 (318)
T ss_dssp -TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSCE
T ss_pred -CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-ECCCCCc
Confidence 366777777889999998765433334445566789999987666666653 578888887644332222 2234456
Q ss_pred eEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEE
Q 007768 476 PSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 476 ~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
..|++++++..|+.+. ..+.|..+++......... .+. ......+++.. +.++++-...+.|..++..+++..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe---cCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 8899999777666654 4578999998653222111 111 12334566653 345556667788999998787765
Q ss_pred EEEe
Q 007768 555 RTLK 558 (590)
Q Consensus 555 ~~l~ 558 (590)
..+.
T Consensus 243 ~~i~ 246 (318)
T 3sov_A 243 REIH 246 (318)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=0.00058 Score=72.49 Aligned_cols=249 Identities=7% Similarity=0.044 Sum_probs=141.8
Q ss_pred CeeEEEEcC-CCCCEEEEEeCCCcEEEEecCCCCeeEEEecc---CCCCeEEEEE-------ccCCCEEEEEecCC----
Q 007768 301 GVSAIRFFP-KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRDISF-------CNDGTKFLTASYDK---- 365 (590)
Q Consensus 301 ~V~~l~~sp-~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~---h~~~V~~l~f-------spdg~~l~s~s~Dg---- 365 (590)
....|+|.| +.++++++....+.|++.|+ ..+........ .......|+| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~-~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDL-KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEET-TTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEEC-CCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 357889998 44555555555577888887 34444333322 1235899999 99999777776554
Q ss_pred ---eEEEEECCC-CcEE-----EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC-------CCce--------
Q 007768 366 ---NIKYWDTET-GQVI-----RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-------TKEI-------- 421 (590)
Q Consensus 366 ---~I~vWd~~t-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-------t~~~-------- 421 (590)
.|.+++... +... ..+.....+..+++.+. .+.++++-..++.|+.+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~--~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPI--NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTT--TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCC--CCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 266665443 2221 12222233445556553 34778888888999999997 5543
Q ss_pred ---EEE-Ec-CcCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCC--CcE--EEEeec--C------------CCCcee-
Q 007768 422 ---TQE-YD-QHLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGI--PVV--IKYISE--P------------HMHSMP- 476 (590)
Q Consensus 422 ---~~~-~~-~h~~~V~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~--~~~--~~~~~~--~------------~~~~i~- 476 (590)
... +. ........|+|+|++++| ++-+....|+.+++.. ... ...+.. . ......
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 112 21 223446789999999954 4445667888866543 211 011111 0 011233
Q ss_pred EEEEc-------CCCCEEEEEEcCCeEEEEEcCCceeecccccc-----------cCcc--------cccceEEEEEcCC
Q 007768 477 SISLH-------PNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-----------AGHI--------VAGYACQVNFSPD 530 (590)
Q Consensus 477 ~i~~s-------p~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~-----------~~~~--------~~~~v~~v~~spd 530 (590)
.++.. +++.++++-..++.|+.++.. +. +..+... .+.. .-.....|+++++
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEeCC-CC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 45554 456666666677889999843 32 1111100 0110 0123567888886
Q ss_pred -CCEEEEEcCCCcEEEEeCCCCeEE
Q 007768 531 -GRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 531 -g~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
|.++++=..+.+|+.+++.....+
T Consensus 455 ~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCEEEEEeCCCCEEEEEECCCCccc
Confidence 666666667788888887665443
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.16 E-value=0.00085 Score=64.98 Aligned_cols=205 Identities=10% Similarity=0.132 Sum_probs=127.2
Q ss_pred EeccCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCCCcEEEEecCC--CcceEEEEecCCCCCcEEEEEECCCeEEEE
Q 007768 338 TYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 414 (590)
.+.+-...+..++|+|++..|+ +...++.|...|+. ++.++.+... .....+++... +.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~---g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD---NQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST---TEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC---CEEEEEECCCCcEEEE
Confidence 4556667899999999766555 56778899999998 8888887654 34445555432 2455665567889999
Q ss_pred eCCCCce---EEEEc------CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC---CcEEEEee------cCCCCcee
Q 007768 415 DMNTKEI---TQEYD------QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---PVVIKYIS------EPHMHSMP 476 (590)
Q Consensus 415 D~~t~~~---~~~~~------~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~---~~~~~~~~------~~~~~~i~ 476 (590)
++..... +.... ........|+|.|.+..|+++.......||.++. ...+..+. ......+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8765432 22221 1234468999999998888877766556665531 11111111 12344578
Q ss_pred EEEEcCCCCEE-EEEEcCCeEEEEEcCCceeecccccccCcc----cccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007768 477 SISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 477 ~i~~sp~g~~l-a~~s~dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
+++++|....| +.......|.++|.... .........+.. .-...-.|+|.++|++.++ +.-..++.+.-
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 99999976554 44555677888887654 222222221210 0123457999999985555 55566666643
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.15 E-value=0.00092 Score=69.17 Aligned_cols=230 Identities=10% Similarity=-0.018 Sum_probs=141.5
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC
Q 007768 348 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 427 (590)
Q Consensus 348 ~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~ 427 (590)
|.+..+. .+|+.+ ....|+.+++..............+..+.+.+.. +.++++-...+.|+.+++........+..
T Consensus 81 C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~--~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRR--ELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCcccc-ceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCC--CeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 4444442 334433 3467888898877666555555556666666543 36777777788999999987765444444
Q ss_pred cCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc-C-CeEEEEEcCCc
Q 007768 428 HLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D-NQILIYSTRER 504 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~-d-g~I~iwd~~~~ 504 (590)
.......+++.+.+..| ++-...+.|.+.++........+ .........++++|.+..|+.... . +.|..+++...
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 44556788998765554 45555678888888655433333 234456789999997776666554 3 67888887653
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCC
Q 007768 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
...... ... ......|+|+|++..|+.++ ..+.|..+|+........+........++++. ++.++++-...
T Consensus 236 ~~~~~~---~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~ 308 (386)
T 3v65_B 236 GRRIIA---DTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHT 308 (386)
T ss_dssp SCEEEE---CSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTT
T ss_pred CcEEEE---ECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCC
Confidence 222111 111 23356799998776666554 56789999986544333343334456777773 34455555455
Q ss_pred CcEEEc
Q 007768 584 GLIKYW 589 (590)
Q Consensus 584 g~I~iW 589 (590)
+.|..+
T Consensus 309 ~~V~~~ 314 (386)
T 3v65_B 309 KSINSA 314 (386)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 556543
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=9.9e-05 Score=82.18 Aligned_cols=237 Identities=12% Similarity=0.121 Sum_probs=132.1
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEecCCCCeeEEEeccCCC-CeEEEEEccCCCEEEEEe-cC-----CeEEE
Q 007768 298 HTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSK-AVRDISFCNDGTKFLTAS-YD-----KNIKY 369 (590)
Q Consensus 298 H~~~V~~l~~sp~~g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~-~V~~l~fspdg~~l~s~s-~D-----g~I~v 369 (590)
+.....++++..+ +.+++.|+. +..+.+||.. ...-...-..+.. .-.++++.++++.++.|+ .+ ..+.+
T Consensus 241 ~~~~~~~~~~~~~-g~lyv~GG~~~~~v~~yd~~-t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 241 HDMFCPGISMDGN-GQIVVTGGNDAKKTSLYDSS-SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp CCCSSCEEEECTT-SCEEEECSSSTTCEEEEEGG-GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred CCCccccccCCCC-CCEEEeCCCCCCceEEecCc-CCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceE
Confidence 3334445677777 889999884 5689999983 3332221111212 223456667899999998 44 57999
Q ss_pred EECCCCcEEEEecCCCcceEEE--EecCCCCCcEEEEEECC---------CeEEEEeCCCCceEEEEcCcC---------
Q 007768 370 WDTETGQVIRTFSTGKIPYVVK--LNPDDDKQNILLAGMSD---------KKIVQWDMNTKEITQEYDQHL--------- 429 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~lvsg~~d---------g~I~iwD~~t~~~~~~~~~h~--------- 429 (590)
||..+.+....-.....+.... ......+..+++.|+.+ ..+..||..+.........+.
T Consensus 319 yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 319 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398 (656)
T ss_dssp EETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred eCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCC
Confidence 9998876544311000000000 00000122445555544 356788888765433322111
Q ss_pred CceeEEEEeC-CCCEEEEEeCCC-----------cEEEEECCCCcEEEEe--ecCCCCceeEEEEcCCCCEEEEEEcC--
Q 007768 430 GAVNTITFVD-SNRRFVTSSDDK-----------SLRVWEFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQSLD-- 493 (590)
Q Consensus 430 ~~V~~i~~~p-~~~~l~s~s~Dg-----------~I~iwdl~~~~~~~~~--~~~~~~~i~~i~~sp~g~~la~~s~d-- 493 (590)
..-.++.|.. +++.+++|+.++ .|.+||..+....... ..+......++++.|+++++++|+.+
T Consensus 399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 1223444433 667777777432 5778887766544332 22223334566778899999999864
Q ss_pred ---------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC
Q 007768 494 ---------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 494 ---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
..+.+||..+.. .......... ........+.|+|++++.|+.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~-W~~~~~~~~~--R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDT-FYKQNPNSIV--RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTE-EEECCCCSSC--CCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCc-eeecCCCCCc--cccccHhhcCCCcEEEecCCC
Confidence 568999986643 1111111111 122234556799999999985
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.12 E-value=0.0043 Score=70.07 Aligned_cols=229 Identities=6% Similarity=-0.068 Sum_probs=141.5
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCC----cEEEEec-CCCcceEEEEec
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETG----QVIRTFS-TGKIPYVVKLNP 394 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~----~~~~~~~-~~~~~~~~~~~~ 394 (590)
...|+..++. ...... +......+..|+|.+... ++++-...+.|+.+++... .....+. ....+..+++.+
T Consensus 403 ~~~Ir~i~l~-~~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 403 RHEVRKMTLD-RSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp BSSEEEECTT-SCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred ccceeEeecc-CCccee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 4567877873 333333 333456688999998544 4455555688999998753 2222232 334556677776
Q ss_pred CCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEEEeecCCC
Q 007768 395 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHM 472 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~~~~~~~~~ 472 (590)
.. ++++++-...+.|.+.++........+.........|++.|.+.+|+.+.. .+.|.+.++........+ ....
T Consensus 481 ~~--~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv-~~~l 557 (791)
T 3m0c_C 481 IH--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-TENI 557 (791)
T ss_dssp TT--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-CSSC
T ss_pred cC--CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-eCCC
Confidence 54 367777778899999999866544444445567889999998666666553 267888888755443333 3344
Q ss_pred CceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 473 HSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 473 ~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
.....|++++.+..|+.+. ..+.|..+++........... .+. -.....|++.. +.++++-...+.|...|..++
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-~~~--l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKR--LAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTT--TSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-CCc--cCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 5788999998777776665 446799999865433221111 011 11233455533 234444456788988988888
Q ss_pred eEEEEEe
Q 007768 552 KVFRTLK 558 (590)
Q Consensus 552 ~~~~~l~ 558 (590)
+.+..+.
T Consensus 634 ~~~~~l~ 640 (791)
T 3m0c_C 634 SDVNLLA 640 (791)
T ss_dssp CCCEEEE
T ss_pred cceEEee
Confidence 7666664
No 284
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.08 E-value=0.014 Score=59.98 Aligned_cols=253 Identities=11% Similarity=0.131 Sum_probs=163.0
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCc
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 400 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
...|.|-|+.+.....+.-..-. +.-.+|..+.|+.-. ..++.|+|+++.+.+..+.....+..-.|....
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~---- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT----
T ss_pred CCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC----
Confidence 34788889865555544433222 344677777776655 689999999999999998887766555555432
Q ss_pred EEEEEECCCeEEEEeCCC-CceEEEEcCcC----CceeEEEEeCCCCEEEEEe-------CCCcEEEEECCCCcEEEEee
Q 007768 401 ILLAGMSDKKIVQWDMNT-KEITQEYDQHL----GAVNTITFVDSNRRFVTSS-------DDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 401 ~lvsg~~dg~I~iwD~~t-~~~~~~~~~h~----~~V~~i~~~p~~~~l~s~s-------~Dg~I~iwdl~~~~~~~~~~ 468 (590)
.|.. -.+..|+.|++.. ..++..+..|. ..|..-..+++.++++..+ -.|.+.+|....... ...
T Consensus 118 ~l~l-VT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~i 194 (494)
T 1bpo_A 118 TVAL-VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPI 194 (494)
T ss_dssp EEEE-ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE--EEE
T ss_pred eEEE-EcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc--chh
Confidence 2333 3467899999974 35666676654 4677777888899887554 246788998866543 233
Q ss_pred cCCCCceeEEEEcCC---CCEEEEEEcC---CeEEEEEcCCc---eeecccc----cccCcccccceEEEEEcCCCCEEE
Q 007768 469 EPHMHSMPSISLHPN---TNWLAAQSLD---NQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~---g~~la~~s~d---g~I~iwd~~~~---~~~~~~~----~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
++|......+.+..+ ..+|+.+... +.++|.++... ......+ .+..........++..|+.-..++
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 345444433333221 1244444433 78999988542 1110000 122222234455689999999999
Q ss_pred EEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 536 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 536 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
.-+.-|.|++||+.++.++..-+.....|...+-+. ...-++.....|.|
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQV 324 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTCEE
T ss_pred EEecCceEEEEecccceeeeeecccCCceEEecccC-CCCcEEEEccCceE
Confidence 999999999999999999988887777777666665 33345555566655
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.08 E-value=0.00046 Score=78.03 Aligned_cols=197 Identities=11% Similarity=0.127 Sum_probs=107.6
Q ss_pred CCCC-CeeEEEEc-CCCCCEEEEE-eCCC----cEEEEecCCCC-eeEE-EeccCCCCeEEEEEccCCCEEEEEecC---
Q 007768 297 GHTK-GVSAIRFF-PKYGHLILSA-GMDT----KVKIWDVVNSG-KCMR-TYMGHSKAVRDISFCNDGTKFLTASYD--- 364 (590)
Q Consensus 297 gH~~-~V~~l~~s-p~~g~~L~sg-s~Dg----~I~iWd~~~~~-~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~D--- 364 (590)
+|.- .+...+|| |+ |++|+-+ +.+| .|+++|+ .++ +.+. .+. .....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl-~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRI-SDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEET-TCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEEC-CCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 4443 68889999 99 7766543 4333 4999999 455 4221 111 123568999999988877765
Q ss_pred --CeEEEEECCCCcE--EEEecCCC--cceEEEEecCCCCCcEEEEEEC--CCeEEEEeCCCC--ce--EEEEcCcCCce
Q 007768 365 --KNIKYWDTETGQV--IRTFSTGK--IPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTK--EI--TQEYDQHLGAV 432 (590)
Q Consensus 365 --g~I~vWd~~t~~~--~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~t~--~~--~~~~~~h~~~V 432 (590)
..|.++++.++.. ...+.... ......+++++ ..++++... ...|+++|+.++ +. ...........
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 3688889987642 23332222 22334555543 344444432 356888999875 23 22223344555
Q ss_pred eEEEEeCCCCEEEEEeCC----CcEEEEECCCCcEEE--EeecCCCCceeEEEEcCCCCEEEEEEcCCe--EEEEEc
Q 007768 433 NTITFVDSNRRFVTSSDD----KSLRVWEFGIPVVIK--YISEPHMHSMPSISLHPNTNWLAAQSLDNQ--ILIYST 501 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~s~D----g~I~iwdl~~~~~~~--~~~~~~~~~i~~i~~sp~g~~la~~s~dg~--I~iwd~ 501 (590)
.++.|+..+.+++.+..+ ..|..+++..+.... .+.......+..+.+. .+.++++...++. |.++++
T Consensus 323 ~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 666655444344444433 257777776432111 2222122244555554 2344555566675 455564
No 286
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.07 E-value=0.0059 Score=59.01 Aligned_cols=203 Identities=12% Similarity=0.128 Sum_probs=128.2
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEecc-CCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 007768 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 293 ~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
+.+.|-.+.+..|+|.|+++.++++...++.|...|. .++.++.+.- -....-.|++.+++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~--~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTT--NGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEET--TCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeC--CCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3455766789999999985556666788888888888 3777777632 225678899998887767766678899998
Q ss_pred CCCCcE---EEEecC-------CCcceEEEEecCCCCCcEEEEEECCC-eEEEEeC-CCCceEEEEc-------CcCCce
Q 007768 372 TETGQV---IRTFST-------GKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDM-NTKEITQEYD-------QHLGAV 432 (590)
Q Consensus 372 ~~t~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~lvsg~~dg-~I~iwD~-~t~~~~~~~~-------~h~~~V 432 (590)
+..... +..... ......+++.+.. ..++++.-.+. .|+.|+- .....+..+. .+...+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD--HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCC--CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 765442 233321 1122567777754 24555544444 5666651 1111122221 134467
Q ss_pred eEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeecCC--------CCceeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007768 433 NTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPH--------MHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 433 ~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~~~--------~~~i~~i~~sp~g~~la~~s~dg~I~iwd~ 501 (590)
.+++++|....| +.....+.|.++|.... .+..+.... ......|++.++|+++++ +..+.++.|.-
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 899999976655 45555677888887644 454444322 125678999999985444 77777777643
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.06 E-value=0.0026 Score=66.09 Aligned_cols=222 Identities=7% Similarity=-0.072 Sum_probs=138.2
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC----ceEEEEcCcCCce
Q 007768 357 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAV 432 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~----~~~~~~~~h~~~V 432 (590)
+|+.+ ....|+..++........+.....+..+.+.+.. +.++++-...+.|+.+++... .....+.......
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~--~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeecc--CceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 34443 3478999999877666666555666667776643 356677677889999998752 2333444445667
Q ss_pred eEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc--CCeEEEEEcCCceeecc
Q 007768 433 NTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNK 509 (590)
Q Consensus 433 ~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~--dg~I~iwd~~~~~~~~~ 509 (590)
..|++.+.+. ++++-...+.|.+.++........+. ........|+++|.+.+|+.... .+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence 8899987444 45555667889999987665444443 24455789999997777666653 36788888865332211
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEec--CCCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 510 KKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
. ... -.....|++++++..|+.++ ..+.|..+|+........+.. .-....++++. ++.++++-...+.|
T Consensus 241 ~---~~~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V 313 (400)
T 3p5b_L 241 V---TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI 313 (400)
T ss_dssp E---CSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSE
T ss_pred E---ECC--CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeE
Confidence 1 111 13456799998877776665 567899999865444333332 22345677763 34455555455566
Q ss_pred EEc
Q 007768 587 KYW 589 (590)
Q Consensus 587 ~iW 589 (590)
..+
T Consensus 314 ~~~ 316 (400)
T 3p5b_L 314 FSA 316 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 288
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.90 E-value=0.01 Score=69.93 Aligned_cols=216 Identities=13% Similarity=0.149 Sum_probs=128.1
Q ss_pred eEEEEECCCCcEEEEecCCCc--ceEEEEe-cCCCCCcEEEEEE----------CCCeEEEEeCCCCceEEEE-cCcCCc
Q 007768 366 NIKYWDTETGQVIRTFSTGKI--PYVVKLN-PDDDKQNILLAGM----------SDKKIVQWDMNTKEITQEY-DQHLGA 431 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~--~~~~~~~-~~~~~~~~lvsg~----------~dg~I~iwD~~t~~~~~~~-~~h~~~ 431 (590)
.|++.|-.+.+.+..+..... ..+++.. .......++++|+ ..|.|++|++..+++.... ....++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 477888888887776655433 3333332 2333457888887 3588999998755432222 234678
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
|++++-. +| +|+++- ...|++|++...+.+..-. ..-..+..+.+...++++++|..-..|.++..+.. ...+.
T Consensus 888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~-~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~--~~~L~ 961 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTEC-NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM--EGNFE 961 (1158)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEE-EECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT--TTEEE
T ss_pred CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEe-eccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC--CCeEE
Confidence 9888866 34 555544 4789999998765444111 11112333344446788999988777777654321 11122
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--------CeEEEEEecCC-CcEEEEE---EcCCC------
Q 007768 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--------CKVFRTLKCHE-GVCIGCE---WHPLE------ 573 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--------~~~~~~l~~h~-~~V~~v~---~sp~~------ 573 (590)
.+.......+++++.|-.++ .++.++.+|.|.+..... .++...-.-|- ..|+++. +.+..
T Consensus 962 ~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~ 1040 (1158)
T 3ei3_A 962 EIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETST 1040 (1158)
T ss_dssp EEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------
T ss_pred EEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccc
Confidence 23333335667777776554 677899999999987643 23333333343 3566664 33311
Q ss_pred --CCEEEEEeCCCcEEE
Q 007768 574 --QSKVATCGWDGLIKY 588 (590)
Q Consensus 574 --~~~l~s~g~Dg~I~i 588 (590)
...++-++.+|.|-+
T Consensus 1041 ~~~~~il~~T~~GsIg~ 1057 (1158)
T 3ei3_A 1041 PTQGSVLFGTVNGMIGL 1057 (1158)
T ss_dssp CEEEEEEEEETTSCEEE
T ss_pred cccceEEEEecCCEEEE
Confidence 235788889999865
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.89 E-value=0.0069 Score=60.44 Aligned_cols=206 Identities=9% Similarity=0.074 Sum_probs=125.1
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccC-------CCCeEEEEE---ccCCCEEEEEec--
Q 007768 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISF---CNDGTKFLTASY-- 363 (590)
Q Consensus 296 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~f---spdg~~l~s~s~-- 363 (590)
.+...---+++|.+..+.++++.-..++|..|+.. .+......... ...+..|.| .|+++++++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 33444456788998745555555579999999983 33322222222 114689999 688777775432
Q ss_pred -----------CCeEEEEECC---CCcEEEEecCC------------CcceEEEEecCCCCCcEEEEEECC-CeEEEEeC
Q 007768 364 -----------DKNIKYWDTE---TGQVIRTFSTG------------KIPYVVKLNPDDDKQNILLAGMSD-KKIVQWDM 416 (590)
Q Consensus 364 -----------Dg~I~vWd~~---t~~~~~~~~~~------------~~~~~~~~~~~~~~~~~lvsg~~d-g~I~iwD~ 416 (590)
+..|..+|+. +++.+...... ....+..+..+. .++..++++.. +.|..++.
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeC
Confidence 6789999999 88776655431 222344444443 34778888888 88888887
Q ss_pred CCCceEEEE-c----CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEeecC---CCCceeEE-EEcCCCC
Q 007768 417 NTKEITQEY-D----QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYISEP---HMHSMPSI-SLHPNTN 485 (590)
Q Consensus 417 ~t~~~~~~~-~----~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~--~~~~~~~---~~~~i~~i-~~sp~g~ 485 (590)
.......-+ . ......+.|+++|+++.|++....+.|..+|+..+.. +.....+ .......| ..-.+|+
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 654332222 1 1123467999999999999887799999999986544 2221001 11123333 3334677
Q ss_pred EEE-EEEcCCeEEEEEcCC
Q 007768 486 WLA-AQSLDNQILIYSTRE 503 (590)
Q Consensus 486 ~la-~~s~dg~I~iwd~~~ 503 (590)
.|+ +....+.+.+.+...
T Consensus 247 vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEETTEEEEEECSST
T ss_pred EEEEEcCCCCEEEEECCCC
Confidence 744 444556566655443
No 290
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.87 E-value=0.034 Score=65.47 Aligned_cols=231 Identities=11% Similarity=0.127 Sum_probs=125.3
Q ss_pred eEEEecCC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEE-eccCCCCeEEEEEccC------CCEEEEEe
Q 007768 291 LVHTWSGH-TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCND------GTKFLTAS 362 (590)
Q Consensus 291 ~i~~l~gH-~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fspd------g~~l~s~s 362 (590)
.+..|..- ...|.+.+.+. .+++.++ .+.+.++.+. .+.+... -..-...|.|+++.+. +.+++.|.
T Consensus 504 ~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~-~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~ 578 (1158)
T 3ei3_A 504 LVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIH-PQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGL 578 (1158)
T ss_dssp EEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEE-TTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEE
T ss_pred EEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEee-CCceeeecccCCCCceEEEEeecCCCCcccccEEEEEE
Confidence 45556543 33566666543 3555555 5788888874 3332211 1123567999999863 46899999
Q ss_pred c-CCeEEEEECCCCcEEEEecCCC--cceEEEEecCCCCCcEEEEEECCCeEEEEeC--CCCceEEE---EcCcCCceeE
Q 007768 363 Y-DKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQE---YDQHLGAVNT 434 (590)
Q Consensus 363 ~-Dg~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~--~t~~~~~~---~~~h~~~V~~ 434 (590)
. |++|+|+++.+.+.+.....+. .+..+.+.... ...+|.+|..||.+..+.+ .++.+... +-+ ..++.-
T Consensus 579 ~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~-~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L 656 (1158)
T 3ei3_A 579 WTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFE-SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVL 656 (1158)
T ss_dssp TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEET-TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEE
T ss_pred CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeC-CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEE
Confidence 7 9999999999888776655432 44444444332 3367899999999865544 45554432 222 234544
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeE-EEEcCC--CCEEEEEEcCCeEEEEEcCCceeecccc
Q 007768 435 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS-ISLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 435 i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~-i~~sp~--g~~la~~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
..+...+..-+.+..+....+|.-+..-....+ ....+.. ..|+.. ..-++..+ ++.++|..+.....+...+
T Consensus 657 ~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ 732 (1158)
T 3ei3_A 657 RTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRT 732 (1158)
T ss_dssp EEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEE
T ss_pred EEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEE
Confidence 444444444444444555555554432222222 2223333 334322 23344433 5569998875432221111
Q ss_pred cccCcccccceEEEEEcCCCCEEEE
Q 007768 512 RFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
-.....+..++++|..+.++.
T Consensus 733 ----ipL~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 733 ----VPLYESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp ----EECSSEEEEEEEEGGGTEEEE
T ss_pred ----EeCCCCceEEEEcCCCCEEEE
Confidence 111234566777776665443
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.87 E-value=0.0038 Score=62.88 Aligned_cols=200 Identities=14% Similarity=0.227 Sum_probs=125.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEec----CCCCCcEEEEEEC---CCeEEEEeC--CCCceEEE
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNP----DDDKQNILLAGMS---DKKIVQWDM--NTKEITQE 424 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~lvsg~~---dg~I~iwD~--~t~~~~~~ 424 (590)
...+++.....+-+.+||+ +|+.+..+..+. ..-+.+.+ .+....++++... +++|.+|++ .++. +..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~-~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGK-LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSC-EEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCC-cccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 3456777777889999999 899998886533 33333333 1111113444444 578999976 3443 444
Q ss_pred EcC------c-CCceeEEEE--eCC-CC-EEEEEeCCCcEEEEECC-------CCcEEEEeecCCCCceeEEEEcCCCCE
Q 007768 425 YDQ------H-LGAVNTITF--VDS-NR-RFVTSSDDKSLRVWEFG-------IPVVIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 425 ~~~------h-~~~V~~i~~--~p~-~~-~l~s~s~Dg~I~iwdl~-------~~~~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
+.. . ...+..+|+ ++. +. ++++...+|.+..|++. ..+.++.+.. ...+..|...+....
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGR 193 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCe
Confidence 421 1 145667777 664 43 67788888999999983 2345566643 457889999999999
Q ss_pred EEEEEcCCeEEEEEcCCce--eecccccccCcccccceEEEEE--cCCCC-EEEEEc-CCCcEEEEeCC-CCeEEEEEe
Q 007768 487 LAAQSLDNQILIYSTRERF--QLNKKKRFAGHIVAGYACQVNF--SPDGR-FVMSGD-GEGKCWFWDWK-SCKVFRTLK 558 (590)
Q Consensus 487 la~~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~v~~v~~--spdg~-~l~sgs-~dg~I~iwd~~-t~~~~~~l~ 558 (590)
|+++-.+..|..|+..... .......+........+..|++ .++|+ ||++++ .+..+.+||.. +.+.+..|.
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 9999999878888855211 1111122211111223555666 56666 666555 67899999996 778888885
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=0.0041 Score=65.98 Aligned_cols=240 Identities=10% Similarity=0.013 Sum_probs=136.8
Q ss_pred CeEEEEEcc-CCCEEEEE-ecCCeEEEEECCCCcEEEEecCCC----cceEEEE-------ecCCCCCcEEEEEECCC--
Q 007768 345 AVRDISFCN-DGTKFLTA-SYDKNIKYWDTETGQVIRTFSTGK----IPYVVKL-------NPDDDKQNILLAGMSDK-- 409 (590)
Q Consensus 345 ~V~~l~fsp-dg~~l~s~-s~Dg~I~vWd~~t~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~lvsg~~dg-- 409 (590)
....|+|+| +...|+.+ ...+.|++.|+.++.+......+. .+..+++ .+.+. .++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCCCCCc
Confidence 356899998 34445544 444779999999887776554432 3556666 55442 3555544432
Q ss_pred ----eEEEEeCCC-CceE-----EEEcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECC-------CCcE--------
Q 007768 410 ----KIVQWDMNT-KEIT-----QEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFG-------IPVV-------- 463 (590)
Q Consensus 410 ----~I~iwD~~t-~~~~-----~~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~-------~~~~-------- 463 (590)
.|.+++... +... ..+.. ......++++|+ +.++++-..++.|+.+|+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 366776443 2221 22221 224567888995 5556666678889999987 4432
Q ss_pred ---EEE-eecCCCCceeEEEEcCCCCEEEEE-EcCCeEEEEEcCCce-eecccccc------cCcc-------cccceE-
Q 007768 464 ---IKY-ISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERF-QLNKKKRF------AGHI-------VAGYAC- 523 (590)
Q Consensus 464 ---~~~-~~~~~~~~i~~i~~sp~g~~la~~-s~dg~I~iwd~~~~~-~~~~~~~~------~~~~-------~~~~v~- 523 (590)
... +..+.......|+|+|++++|+++ +..+.|+.++..... .+.....+ .+.. .-....
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 112 223334456789999999965555 456788887654311 11000011 1110 001123
Q ss_pred EEEEc-------CCCCEEEEEcCCCcEEEEeCCCCeEEEEEecC---------------C---------CcEEEEEEcCC
Q 007768 524 QVNFS-------PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH---------------E---------GVCIGCEWHPL 572 (590)
Q Consensus 524 ~v~~s-------pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h---------------~---------~~V~~v~~sp~ 572 (590)
.++.. ++|.++++-..+.+|+.++ .+|. +.++-+. . ....+|++.++
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 34454 5677777777788999998 5664 4444332 0 13578999884
Q ss_pred CCCEEEEEeCCCcEEEc
Q 007768 573 EQSKVATCGWDGLIKYW 589 (590)
Q Consensus 573 ~~~~l~s~g~Dg~I~iW 589 (590)
++.++++=.....|+.+
T Consensus 455 ~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCEEEEE
Confidence 35555555556677765
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.85 E-value=0.026 Score=62.08 Aligned_cols=227 Identities=7% Similarity=-0.068 Sum_probs=143.4
Q ss_pred CCCcEEEEecCCCCeeEEEec-cCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCCCcEEEEecCC-CcceEEEEecCC
Q 007768 320 MDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDD 396 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~ 396 (590)
..+.|+..++. .......+. ..-..+..|+|++.+..|+ +-..++.|..+++........+..+ ..+.-+++.+..
T Consensus 13 ~~~~I~~i~l~-~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLE-TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESS-CTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred eCCcEEEEECC-CCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 45678888884 332222221 2335688999999655555 5456789999998766544444433 356677777654
Q ss_pred CCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEEEeecCCCCc
Q 007768 397 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHMHS 474 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~~~~~~~~~~~ 474 (590)
++++++-...+.|.+.++........+.........|++.|....|+.+.. .+.|...++......... . ....
T Consensus 92 --~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~-~~~~ 167 (628)
T 4a0p_A 92 --KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-P-NVGR 167 (628)
T ss_dssp --TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-C-SCSS
T ss_pred --CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-C-CCCC
Confidence 367777777889999998765433333345566789999986666666553 467888887655433333 2 4456
Q ss_pred eeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE
Q 007768 475 MPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 475 i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~ 553 (590)
...|++++.+..|+.+. ..+.|..+++...... .. ... ......+++.. +.+.++-...+.|...|..+++.
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~---~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VI---ADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE---EEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCceE-Ee---ecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 78999999877666665 4578999998664331 11 111 12233566654 44445555678899999877765
Q ss_pred EEEEe
Q 007768 554 FRTLK 558 (590)
Q Consensus 554 ~~~l~ 558 (590)
...+.
T Consensus 241 ~~~l~ 245 (628)
T 4a0p_A 241 RTIIQ 245 (628)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 55554
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.85 E-value=0.0028 Score=63.62 Aligned_cols=216 Identities=9% Similarity=-0.016 Sum_probs=127.4
Q ss_pred CCeEEEEECCCCc--EEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCC
Q 007768 364 DKNIKYWDTETGQ--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 364 Dg~I~vWd~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~-~~~~~~h~~~V~~i~~~p~ 440 (590)
...|+.+++.... ....+.....+..+.|.+ ..+.++++-...+.|..+++..+.. ...+.........+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 4678899988763 222222222334455554 3346777777788999999876632 1222223345678999875
Q ss_pred CCE-EEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc--CCeEEEEEcCCceeecccccccCcc
Q 007768 441 NRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 441 ~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~--dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
+.. +++-...+.|.++++........+ .........++++|.+.+|+.... .+.|..+++......... ...
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---~~~- 164 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII---NSE- 164 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE---CSS-
T ss_pred CCeEEEEECCCCEEEEEECCCCcEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE---ECC-
Confidence 544 455556788999998755433222 234456789999997777666653 578888887643221111 111
Q ss_pred cccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 518 VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
-.....++|++++..|+.++ ..+.|..+|+........+........++++.. +.++++-...+.|..+
T Consensus 165 -l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 165 -IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILAC 234 (318)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEE
T ss_pred -CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEE
Confidence 13456799999777666554 567899999864333222332334456777643 3344444444555543
No 295
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.82 E-value=0.00093 Score=75.52 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=107.4
Q ss_pred EEEe-cCCCCCcEEEEEECCC----eEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeCC-----CcEEEEEC
Q 007768 390 VKLN-PDDDKQNILLAGMSDK----KIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDD-----KSLRVWEF 458 (590)
Q Consensus 390 ~~~~-~~~~~~~~lvsg~~dg----~I~iwD~~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D-----g~I~iwdl 458 (590)
..++ |++ ..++++...+| .|+++|+.++ +.+.. .-......+.|+|+++.|+....+ ..|+++++
T Consensus 179 ~~~S~PDG--~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 179 VKPAPPEH--DLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEECTTTT--CEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred eEecCCCC--CEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 4455 443 23444444333 4999999998 63211 001124578999999988877765 35888888
Q ss_pred CCCcE--EEEeecCCCCceeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007768 459 GIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 459 ~~~~~--~~~~~~~~~~~i~~i~~sp~g~~la~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
.++.. ...+..........+.|+|+|++|+..+.. ..|+++|+.+.........+.... ......+.|+.++.+
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHGTSHL 333 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEETTTEE
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeeeeCCEE
Confidence 77642 222222233346678999999998877643 468888887641100001111111 223334555444444
Q ss_pred EEEEcCC----CcEEEEeCCCCeEEEE-EecCCC--cEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 534 VMSGDGE----GKCWFWDWKSCKVFRT-LKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 534 l~sgs~d----g~I~iwd~~t~~~~~~-l~~h~~--~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
++....+ ..|+.+++.++..... +..|.. .+.++.+. +..++++...+|..+||
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 5555443 3677888765322222 333443 34555554 45577777778876654
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.0022 Score=64.59 Aligned_cols=196 Identities=9% Similarity=0.177 Sum_probs=122.7
Q ss_pred EEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC----C---EEEEEe-C--CCcEEEEEC
Q 007768 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN----R---RFVTSS-D--DKSLRVWEF 458 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~----~---~l~s~s-~--Dg~I~iwdl 458 (590)
.+-.++......+++.....+.|.+||+ +|+.++.+.. +.++.+..-|.- + +++++. . +++|++|++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 3444454445567888888899999999 8888888853 677888777632 2 223333 3 578999987
Q ss_pred C-CCcEEEEeec---C--CC-CceeEEEE--cCC-CC-EEEEEEcCCeEEEEEcCC---c-eeecccccccCcccccceE
Q 007768 459 G-IPVVIKYISE---P--HM-HSMPSISL--HPN-TN-WLAAQSLDNQILIYSTRE---R-FQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 459 ~-~~~~~~~~~~---~--~~-~~i~~i~~--sp~-g~-~la~~s~dg~I~iwd~~~---~-~~~~~~~~~~~~~~~~~v~ 523 (590)
. ....+..+.. + .. ..+..+|+ +|. +. ++++...+|.+..|++.. + ........+.- .+.+-
T Consensus 107 Dp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~E 183 (355)
T 3amr_A 107 DGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTE 183 (355)
T ss_dssp CTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEE
T ss_pred CCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcc
Confidence 4 2223544422 1 11 45667777 674 43 688888889999998842 1 11111122221 24456
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCC-----CCeEEEEEe-cC-CCcEEEEEEc--CCCCCEEEEEe-CCCcEEEcC
Q 007768 524 QVNFSPDGRFVMSGDGEGKCWFWDWK-----SCKVFRTLK-CH-EGVCIGCEWH--PLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~-----t~~~~~~l~-~h-~~~V~~v~~s--p~~~~~l~s~g-~Dg~I~iWD 590 (590)
.+...+....|+.+-.+.-|+.++.. +++++..+. .+ ...+..|++- +++..+|++++ .+.++.+||
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 78888888999999998778888865 355665553 22 2357888874 32222444444 566777775
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.79 E-value=0.01 Score=59.23 Aligned_cols=208 Identities=10% Similarity=0.119 Sum_probs=124.9
Q ss_pred CCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCcEEEE-ecC----CC-cceEEEEec---CCCCCcEEEEEE-----
Q 007768 342 HSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRT-FST----GK-IPYVVKLNP---DDDKQNILLAGM----- 406 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~~~-~~~----~~-~~~~~~~~~---~~~~~~~lvsg~----- 406 (590)
...--.++.|.+....|+.++ ..+.|..||...+..... +.. +. ......+.. ++. +.++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccc
Confidence 334455789988555555555 789999999986654443 221 11 112334444 233 45666544
Q ss_pred --------CCCeEEEEeCC---CCceEEEEcC-------------cCCceeEEEEeCCCCEEEEEeCC-CcEEEEECCCC
Q 007768 407 --------SDKKIVQWDMN---TKEITQEYDQ-------------HLGAVNTITFVDSNRRFVTSSDD-KSLRVWEFGIP 461 (590)
Q Consensus 407 --------~dg~I~iwD~~---t~~~~~~~~~-------------h~~~V~~i~~~p~~~~l~s~s~D-g~I~iwdl~~~ 461 (590)
.+..|..||+. +++.+....- -....+.|+..++|+..++++.. +.|...+....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26889999999 7877665531 11248899999999999999888 88777776544
Q ss_pred cEEEEe-ec---CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc-Ccc-cccceEE-EEEcCCCCE-
Q 007768 462 VVIKYI-SE---PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA-GHI-VAGYACQ-VNFSPDGRF- 533 (590)
Q Consensus 462 ~~~~~~-~~---~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~-~~~-~~~~v~~-v~~spdg~~- 533 (590)
...... .. ......+.|+++|+++.|++....+.|..+|+...... .+..-. +.. ....... +..-.+|+.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEE
Confidence 222111 11 12234679999999999998877999999998743220 011100 110 0011122 233347777
Q ss_pred EEEEcCCCcEEEEeCCCC
Q 007768 534 VMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 534 l~sgs~dg~I~iwd~~t~ 551 (590)
|++....+.+.+.+...+
T Consensus 249 lV~~~~~~~~~l~S~DgW 266 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDNW 266 (334)
T ss_dssp EEEEETTEEEEEECSSTT
T ss_pred EEEcCCCCEEEEECCCCc
Confidence 444445666666665443
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.75 E-value=0.042 Score=60.34 Aligned_cols=280 Identities=9% Similarity=-0.009 Sum_probs=149.1
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec-cCCCCeEEEEEccCCCEEEEEec--CCeEEEEECCCCc
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQ 376 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~--Dg~I~vWd~~t~~ 376 (590)
.....|++.+.+++++++-...+.|.+.++ .+...+.+. ..-....+|++.|.+.+|+.+.. .+.|...++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~--dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNL--DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEEC--CCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 568899999975667777777899999998 344333333 44556789999996555555443 3577777776443
Q ss_pred EEEEe-cCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007768 377 VIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 377 ~~~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..... .....+..+++.+.. +.++++-...+.|..+|+..................|++..+ ..+++-...+.|..
T Consensus 162 ~~~l~~~~~~~P~Glald~~~--~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~ 238 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEE--QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILA 238 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTT--TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred eEEEEeCCCCCCcEEEEEccC--CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEE
Confidence 32222 233456667777643 356666667788999998754333222222233356677544 34444455677888
Q ss_pred EECCCCcEEEEeecC----------CC--------------CceeEEEE-----------cCCC--------------C-
Q 007768 456 WEFGIPVVIKYISEP----------HM--------------HSMPSISL-----------HPNT--------------N- 485 (590)
Q Consensus 456 wdl~~~~~~~~~~~~----------~~--------------~~i~~i~~-----------sp~g--------------~- 485 (590)
.|..++.....+... |. +....+++ .|.| .
T Consensus 239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 318 (619)
T 3s94_A 239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE 318 (619)
T ss_dssp EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence 887554332222110 00 00011111 1111 1
Q ss_pred EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE-cCCCcEEEEeCCCCeEEEEEecCCCcE
Q 007768 486 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-DGEGKCWFWDWKSCKVFRTLKCHEGVC 564 (590)
Q Consensus 486 ~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iwd~~t~~~~~~l~~h~~~V 564 (590)
+|+. +..+.|+..++.............+ -..+..++|.+.+..|+.+ ...+.|+.++.........+...-...
T Consensus 319 ~Ll~-~~~~~i~~i~l~~~~~~~~~~~~~~---l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p 394 (619)
T 3s94_A 319 LLLL-ARRTDLRRISLDTPDFTDIVLQLED---IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHP 394 (619)
T ss_dssp EEEE-EESSCEEEEESSSTTCCCEECCCSC---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred EEEE-EcccceEEEecCCCccceeEEeccc---cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCc
Confidence 2222 2334555555543321111111111 1335679999865555544 467889999887644433333333445
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 565 IGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
.++++.+.++.+.++-+..+.|.+
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEecccCcEEEEeCCCCcEEE
Confidence 677777644545554444455544
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.72 E-value=0.019 Score=63.18 Aligned_cols=228 Identities=9% Similarity=-0.020 Sum_probs=134.0
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCcE-EEEecCC-CcceEEEEecCCC
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDD 397 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~-~~~~~~~-~~~~~~~~~~~~~ 397 (590)
...|+..++.........+......+..|+|++.+..|+.+. ..+.|..+++..... ...+..+ ..+..+++.+..
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~- 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG- 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-
Confidence 467888887322212222333445678999998666665554 467899999876532 2223322 456677777744
Q ss_pred CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEEEeecCCCCce
Q 007768 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHMHSM 475 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~~~~~~~~~~~i 475 (590)
++++++-...+.|.+.++........+.........|++.|.+.+|+.+.. .+.|...++......... .......
T Consensus 96 -~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~~P 173 (619)
T 3s94_A 96 -EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSEIYWP 173 (619)
T ss_dssp -TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSSE
T ss_pred -CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-eCCCCCC
Confidence 367777777899999999765443344345566789999998666666553 356777777544333322 2244567
Q ss_pred eEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEE
Q 007768 476 PSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 476 ~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
..|++++.+..|+.+. ..+.|..+++............. .....+++..+ .+.++-...+.|...|..+++..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~-----~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL-----PHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCC-----CCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 8999999766666654 45779988886543322111011 11224667655 34444446788999998877654
Q ss_pred EEE
Q 007768 555 RTL 557 (590)
Q Consensus 555 ~~l 557 (590)
..+
T Consensus 248 ~~i 250 (619)
T 3s94_A 248 REI 250 (619)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.67 E-value=0.016 Score=65.48 Aligned_cols=215 Identities=7% Similarity=-0.075 Sum_probs=131.6
Q ss_pred cCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC----ceEEEEcCcCCceeEEEEe
Q 007768 363 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~----~~~~~~~~h~~~V~~i~~~ 438 (590)
....|+..++........+.....+..+.+.+. .+.++++-...+.|+.+++... .....+.........|++.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~--~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeeccc--CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 346788888887766555555555566666653 3366777777789999998753 2334444455667889999
Q ss_pred CCCCEE-EEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC--CeEEEEEcCCceeecccccccC
Q 007768 439 DSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--NQILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 439 p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d--g~I~iwd~~~~~~~~~~~~~~~ 515 (590)
+.++.| ++-...+.|.+.++........+. ........|+++|.+.+|+..... +.|.+.++.......... .
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~---~ 555 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---E 555 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---S
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe---C
Confidence 877554 455567899999997655433333 344568899999987776666532 678888886543321111 1
Q ss_pred cccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeEEEEEecC--CCcEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 516 HIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCH--EGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h--~~~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
. -.....|++++.+..|+.++ ..+.|..+++........+... -....+|++.. ..++++-...+.|.
T Consensus 556 ~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 556 N--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIF 626 (791)
T ss_dssp S--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred C--CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEE
Confidence 1 23466799998777766664 4578999998655444444432 22345666643 33333333334443
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.65 E-value=0.00016 Score=80.93 Aligned_cols=239 Identities=7% Similarity=-0.092 Sum_probs=135.2
Q ss_pred CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCC----CcEEEEecC-CCcceEEEEec
Q 007768 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTET----GQVIRTFST-GKIPYVVKLNP 394 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I~vWd~~t----~~~~~~~~~-~~~~~~~~~~~ 394 (590)
.+.|++.++ ........+ .....+..|+|++.+..|+.+ ...+.|..+++.. ......+.. ...+..+++.+
T Consensus 385 ~~~I~~id~-~~~~~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTL-DRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECT-TSCCEECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeC-CCCcceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 356777777 333333222 233457789999866666655 4457899999875 222222211 12233445543
Q ss_pred CCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-C-CcEEEEECCCCcEEEEeecCCC
Q 007768 395 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-D-KSLRVWEFGIPVVIKYISEPHM 472 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-D-g~I~iwdl~~~~~~~~~~~~~~ 472 (590)
. .++++++-...+.|.++++........+.........|++.|.+.+|+.+.. . +.|.++++....... +.....
T Consensus 463 ~--~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-l~~~~l 539 (699)
T 1n7d_A 463 I--HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-LVTENI 539 (699)
T ss_dssp S--SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-ESCSSC
T ss_pred e--CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-EEeCCC
Confidence 3 3356666667789999998765544444333456688999987665555443 2 678887775433222 222233
Q ss_pred CceeEEEEcCCCCEEEEE-EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007768 473 HSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 473 ~~i~~i~~sp~g~~la~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
.....|+|+|++..|+.+ +..+.|..+++......... ..... ......|++..+ .++++....+.|..++..++
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~-~~~~~--~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL-EDEKR--LAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC-CCSSS--CSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE-ecCCc--CCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 456789999976555544 45678999998653222111 11111 111223555443 44455556789999998888
Q ss_pred eEEEEEecCCCcEEEEE
Q 007768 552 KVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~ 568 (590)
+.+..+........+|+
T Consensus 616 ~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 616 SDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEECCCTTCSSCCCCC
T ss_pred CceEEeecCCCCCcEEE
Confidence 88877754332334443
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.56 E-value=0.01 Score=58.49 Aligned_cols=188 Identities=12% Similarity=0.091 Sum_probs=100.3
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCc---EEEE--ecCCCcceEEEEecCCCCCcEEEEEECC-----CeEEEEeCCC
Q 007768 354 DGTKFLTASYD-----KNIKYWDTETGQ---VIRT--FSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNT 418 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~---~~~~--~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~t 418 (590)
++..++.|+.+ ..+.+||+.+.+ .... +........+... ++.+++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCC
Confidence 56777777765 468999998876 3333 2222222233322 23577777643 4688999988
Q ss_pred CceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc
Q 007768 419 KEITQEYDQHLGA-VNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 419 ~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~ 492 (590)
.+-...-...... -.+++.. +++.++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~ 215 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGF 215 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred CeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCC
Confidence 7533322111111 1222222 56677777654 4688999877654433211222222223322 5667777766
Q ss_pred C-----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe
Q 007768 493 D-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 552 (590)
Q Consensus 493 d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~ 552 (590)
+ +.|.+||+.+..= .......... .....+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 216 ~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDSW-TTVTSMTTPR--CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CSSSBCCCEEEEETTTTEE-EEECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCcccceEEEEeCCCCcE-EECCCCCCcc--cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4 5689999876431 1111111111 11112222 67777777755 357889987654
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.55 E-value=0.059 Score=54.66 Aligned_cols=233 Identities=12% Similarity=0.065 Sum_probs=120.6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcE--EEEec----CCCcceEEEEecCCC-CCcEEEEEECC-----Ce
Q 007768 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV--IRTFS----TGKIPYVVKLNPDDD-KQNILLAGMSD-----KK 410 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~--~~~~~----~~~~~~~~~~~~~~~-~~~~lvsg~~d-----g~ 410 (590)
-..-..|+|.|+|++++ +...|.|.+++ .++. +..+. ....+.-+++.++-. ++.++++-... +.
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34567999999998554 55679999998 4432 22221 123456677777522 22344443332 67
Q ss_pred EEEEeCCCCc------eEEEEc---CcCCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCC-------
Q 007768 411 IVQWDMNTKE------ITQEYD---QHLGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIP------- 461 (590)
Q Consensus 411 I~iwD~~t~~------~~~~~~---~h~~~V~~i~~~p~~~~l~s~s~D-------------g~I~iwdl~~~------- 461 (590)
|..|+...+. ++..+. ........|+|.|+|.++++.+.. |.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888877532 122233 111234689999999776665432 44555554320
Q ss_pred -----cEEEEeecCCCCceeEEEEcC-CCCEEEEEEcCCeE------EEEEcCCcee---------------eccccccc
Q 007768 462 -----VVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQI------LIYSTRERFQ---------------LNKKKRFA 514 (590)
Q Consensus 462 -----~~~~~~~~~~~~~i~~i~~sp-~g~~la~~s~dg~I------~iwd~~~~~~---------------~~~~~~~~ 514 (590)
.....+...+ .....++|+| ++.++++-...+.+ .|.-+..+.. ......+.
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 0001111112 2356789999 56655554333331 1222222110 00111111
Q ss_pred CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE------EEEEecCCCcEEEEEEcCCCCCEEEEEe-CCC
Q 007768 515 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV------FRTLKCHEGVCIGCEWHPLEQSKVATCG-WDG 584 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~------~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~Dg 584 (590)
. ......++| .+|.++++.-..+.|...++..... ...+-.-...+.++++.| ++.++++.. .+|
T Consensus 266 ~---~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~~~~~~g 337 (352)
T 2ism_A 266 Q---GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP-DGALYVTTSNRDG 337 (352)
T ss_dssp T---CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT-TSCEEEEECSTTT
T ss_pred C---CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC-CCcEEEEEeCCCC
Confidence 1 123455677 4677776666777888887754321 122222235789999999 556655543 344
No 304
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.53 E-value=0.018 Score=56.83 Aligned_cols=233 Identities=7% Similarity=0.017 Sum_probs=119.2
Q ss_pred CCEEEEEeC--CCcEEEEecCCCCeeEE--EeccCCCCeEEEEEccCCCEEEEEecC----CeEEEEECCCCcEEEEec-
Q 007768 312 GHLILSAGM--DTKVKIWDVVNSGKCMR--TYMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTETGQVIRTFS- 382 (590)
Q Consensus 312 g~~L~sgs~--Dg~I~iWd~~~~~~~~~--~~~~h~~~V~~l~fspdg~~l~s~s~D----g~I~vWd~~t~~~~~~~~- 382 (590)
+.+++.|+. ...+.+||.. ..+-.. .+......-..+. -++..++.|+.+ ..+.+||+.+.+....-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPK-DYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETT-TTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCC-CCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 345556654 3568888873 332211 1111111112222 366677777755 678899998876544322
Q ss_pred -CCCcceEEEEecCCCCCcEEEEEECC------CeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEEEEeC-----
Q 007768 383 -TGKIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSD----- 449 (590)
Q Consensus 383 -~~~~~~~~~~~~~~~~~~~lvsg~~d------g~I~iwD~~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~----- 449 (590)
........... +..+++.|+.+ ..+.+||+.+.+-...-...... -.+++.. ++..++.|+.
T Consensus 89 p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 89 PTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNV 163 (306)
T ss_dssp SSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTT
T ss_pred CccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCC
Confidence 22222233222 23577777755 46899999887533321111111 1222222 5666666653
Q ss_pred ----CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeecccccccCccccc
Q 007768 450 ----DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 450 ----Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
-..+.+||+.+..-...-..+....-.+++.. ++++++.|+.+ ..+.+||+.+.. ......+... ..
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~--r~ 239 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWK--GV 239 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCC--BS
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCC--cc
Confidence 34588999987754333222222222233333 56677776643 468899987642 1112211111 11
Q ss_pred ceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe--EEEEEe
Q 007768 521 YACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK--VFRTLK 558 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~--~~~~l~ 558 (590)
....+.+ ++++++.|+.+ ..+.+||..+.+ .+..+.
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR 282 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence 1122223 67788888744 468999987754 344443
No 305
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.50 E-value=0.034 Score=55.70 Aligned_cols=230 Identities=8% Similarity=0.052 Sum_probs=118.2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec---cCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
...+.+|.|.+ +..++ ++..+.|.. ....++.-.... .+...+..|.+.+++..++++ .++.|.. ....|
T Consensus 79 ~~~~~~i~~~~--~~~~~-~g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG 151 (327)
T 2xbg_A 79 DYRFNSVSFQG--NEGWI-VGEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSG 151 (327)
T ss_dssp CCEEEEEEEET--TEEEE-EEETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTT
T ss_pred CccEEEEEecC--CeEEE-EECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCC
Confidence 34688888875 34444 455664443 323344333322 234567888887777666555 4554422 22334
Q ss_pred cEEEEecCCC--cceEEEEecCCCCCcEEEEEECCCeEEE-EeC--CCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007768 376 QVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQ-WDM--NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 376 ~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~i-wD~--~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
+.-....... ....+.+.+. ..+++++ ..|.|+. .|- .+-+.+ -......+..+.+.+++..+ .++.+
T Consensus 152 ~tW~~~~~~~~~~~~~~~~~~~---~~~~~~g-~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 152 KNWQALVQEAIGVMRNLNRSPS---GEYVAVS-SRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp SSEEEEECSCCCCEEEEEECTT---SCEEEEE-TTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETT
T ss_pred CCCEEeecCCCcceEEEEEcCC---CcEEEEE-CCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCC
Confidence 3322222222 2333444442 2445444 4555544 342 222222 12345678889998888655 45567
Q ss_pred CcEEEEECCCCcEEEEeecC---CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007768 451 KSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~---~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
|.+++.+...+.....+..+ ....+.++.+.+++.+++++ .++.| ++....+............ ...+..+.|
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~--~~~~~~v~~ 300 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKV--PSNFYKILF 300 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTS--SSCCCEEEE
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCC--CCCeEEEEE
Confidence 88777643323333323222 22357888998887766665 46766 3444444333222211111 123456778
Q ss_pred cCCCCEEEEEcCCCcEEEEe
Q 007768 528 SPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd 547 (590)
.+++. +++++.+|.|.-++
T Consensus 301 ~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 301 FSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EETTE-EEEECSTTEEEEEC
T ss_pred ECCCc-eEEEcCCceEEEEc
Confidence 76555 55566788777665
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.48 E-value=0.02 Score=56.41 Aligned_cols=188 Identities=10% Similarity=0.116 Sum_probs=99.6
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCcEEEEecC--CCcceEEEEecCCCCCcEEEEEECCC-----eEEEEeCCCCce
Q 007768 354 DGTKFLTASYD-----KNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEI 421 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~iwD~~t~~~ 421 (590)
++..++.|+.+ ..+.+||..+.+....-.. ......+... ++.+++.|+.++ .+.+||+.+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 66777777755 3588999988765443322 2222222222 236777777553 578899887753
Q ss_pred EEEEcCcCC-ceeEEEEeCCCCEEEEEeCC-------CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC
Q 007768 422 TQEYDQHLG-AVNTITFVDSNRRFVTSSDD-------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 422 ~~~~~~h~~-~V~~i~~~p~~~~l~s~s~D-------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d 493 (590)
...-..... .-.+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.+
T Consensus 137 ~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~ 214 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHD 214 (302)
T ss_dssp EEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBS
T ss_pred eecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCC
Confidence 332111111 11222222 56666666542 4588999877654433222222222233333 56777777654
Q ss_pred -----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-----cEEEEeCCCCe
Q 007768 494 -----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSCK 552 (590)
Q Consensus 494 -----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-----~I~iwd~~t~~ 552 (590)
+.+.+||+.+.. ........... .....+. -++++++.|+.++ .|.+||..+.+
T Consensus 215 ~~~~~~~~~~yd~~~~~-W~~~~~~~~~r--~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNA-WRQVADMNMCR--RNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCC-EeeCCCCCCcc--ccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 468899987642 11111111111 1111122 2677777777553 48999987764
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.35 E-value=0.043 Score=55.66 Aligned_cols=208 Identities=13% Similarity=0.232 Sum_probs=117.8
Q ss_pred CCeEEEEEccCCCEEEEEe------------cCCeEEEEECCC--CcEEE-EecC------CCcceEEEEecCCCCC-cE
Q 007768 344 KAVRDISFCNDGTKFLTAS------------YDKNIKYWDTET--GQVIR-TFST------GKIPYVVKLNPDDDKQ-NI 401 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s------------~Dg~I~vWd~~t--~~~~~-~~~~------~~~~~~~~~~~~~~~~-~~ 401 (590)
...-+|...++|..+++++ .+|.|.++|..+ ++... .+.. .-.+.-+.+..+.++. .+
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 3455677777776555552 689999999873 33221 1211 1244556665542222 34
Q ss_pred EEEEEC--CCeEEEEeCCCC----ceEEEEcCc-CCceeEEEEeCCCCEEEEEeC-----------------CCcEEEEE
Q 007768 402 LLAGMS--DKKIVQWDMNTK----EITQEYDQH-LGAVNTITFVDSNRRFVTSSD-----------------DKSLRVWE 457 (590)
Q Consensus 402 lvsg~~--dg~I~iwD~~t~----~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~-----------------Dg~I~iwd 457 (590)
+++-.. +..|.+|++... ..+..+.+. ....+.+.+.++|.++++... .|.|+.++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 555444 467777776543 223344332 346789999999987776541 24455555
Q ss_pred CCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CCCEEE
Q 007768 458 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVM 535 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~ 535 (590)
.. . +..+. ......+.++|+|+++.|+++. ..+.|..|++.....+.....+. ..+..-.+++.+ +|++.+
T Consensus 210 ~~--~-~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 210 PN--D-VRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp TT--C-CEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEE
T ss_pred CC--e-EEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEE
Confidence 43 2 22222 2334568899999998887765 46889999986422222222221 134556789999 598877
Q ss_pred EEcCC-CcEEEEeCC--CCeEEEEEe
Q 007768 536 SGDGE-GKCWFWDWK--SCKVFRTLK 558 (590)
Q Consensus 536 sgs~d-g~I~iwd~~--t~~~~~~l~ 558 (590)
++..+ +.|..|+-. .+..+..++
T Consensus 283 a~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 283 GCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EecCCceEEEEECCCCCCCCEEEEEE
Confidence 66533 344444433 244444443
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.35 E-value=0.014 Score=57.52 Aligned_cols=217 Identities=11% Similarity=0.045 Sum_probs=109.7
Q ss_pred CCCEEEEEe-cC-----CeEEEEECCCCcEEEEecC--CCcceEEEEecCCCCCcEEEEEECC-----CeEEEEeCCCCc
Q 007768 354 DGTKFLTAS-YD-----KNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKE 420 (590)
Q Consensus 354 dg~~l~s~s-~D-----g~I~vWd~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~t~~ 420 (590)
++..++.|+ .+ ..+.+||+.+.+....-.. ......+... +..+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL----HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE----CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 344556665 22 4688899888765443221 1122222222 23577777754 468999998876
Q ss_pred ---eEEEEcCcCCc-eeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE
Q 007768 421 ---ITQEYDQHLGA-VNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 421 ---~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s 491 (590)
-...-...... -.+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++++++.|+
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECC
T ss_pred CCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECC
Confidence 33221111111 1222222 56677777643 3588899877654333222222222233332 667777776
Q ss_pred cC-----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeEEEE--Eec
Q 007768 492 LD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKC 559 (590)
Q Consensus 492 ~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~~~~~--l~~ 559 (590)
.+ ..+.+||+.+.. ......+.... .....+.+ ++++++.|+.+ ..|.+||+.+.+-... +..
T Consensus 168 ~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGH-WTNVTPMATKR--SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp BCSSCBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CCCCcccceEEEEeCCCCc-EEeCCCCCccc--ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 54 468899986642 11111111111 11112222 66777777653 4689999987653322 111
Q ss_pred CCCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 560 HEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 560 h~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
.......+.+ ++.+++.||.++
T Consensus 243 ~r~~~~~~~~---~~~i~v~GG~~~ 264 (301)
T 2vpj_A 243 PRCYVGATVL---RGRLYAIAGYDG 264 (301)
T ss_dssp CCBSCEEEEE---TTEEEEECCBCS
T ss_pred cccceeEEEE---CCEEEEEcCcCC
Confidence 1111122333 455777777653
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.33 E-value=0.031 Score=55.44 Aligned_cols=226 Identities=10% Similarity=0.112 Sum_probs=113.9
Q ss_pred EEEEEeCCCcEEEEecCCCCeeE-EEeccCCCCeEEEEEccCCCEEEEEec----C-------CeEEEEECCCCcEEEEe
Q 007768 314 LILSAGMDTKVKIWDVVNSGKCM-RTYMGHSKAVRDISFCNDGTKFLTASY----D-------KNIKYWDTETGQVIRTF 381 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~~~V~~l~fspdg~~l~s~s~----D-------g~I~vWd~~t~~~~~~~ 381 (590)
+++.|+ ..+.+||.. ..+-. ..+..........+...++..++.|+. + ..+.+||..+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~-~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPA-ANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETT-TTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCC-CCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 444555 568899983 44322 222212223333334457788888874 1 23778899887654322
Q ss_pred cCCC--cceEEEEecCCCCCcEEEEEECC--------CeEEEEeCCCCceEEEEcCcCCce-eEEEEeCCCCEEEEEeC-
Q 007768 382 STGK--IPYVVKLNPDDDKQNILLAGMSD--------KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDSNRRFVTSSD- 449 (590)
Q Consensus 382 ~~~~--~~~~~~~~~~~~~~~~lvsg~~d--------g~I~iwD~~t~~~~~~~~~h~~~V-~~i~~~p~~~~l~s~s~- 449 (590)
.... ....+... +..+++.|+.+ ..+.+||+.+.+-...-....... .+++. -+++.++.|+.
T Consensus 84 ~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 158 (315)
T 4asc_A 84 PLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKG 158 (315)
T ss_dssp CBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred CCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCC
Confidence 2111 11122222 22567777632 468999998875322111111111 22222 35667777765
Q ss_pred C-----CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceeecccccccCcccc
Q 007768 450 D-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 450 D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
+ ..+.+||+.+..-...-..+....-.+++.. ++++++.|+.++ .+.+||+.+.. ...........
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r-- 234 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQER-- 234 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCC--
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcc--
Confidence 2 4689999877643332211221122233333 667777777654 58889887642 11112111111
Q ss_pred cceEEEEEcCCCCEEEEEcCC--------------CcEEEEeCCCCeE
Q 007768 520 GYACQVNFSPDGRFVMSGDGE--------------GKCWFWDWKSCKV 553 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~d--------------g~I~iwd~~t~~~ 553 (590)
.....+.+ ++++++.|+.+ ..|.+||..+.+-
T Consensus 235 ~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 235 SSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp BSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred cceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 11112222 66777777653 2477888877643
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.27 E-value=0.1 Score=52.84 Aligned_cols=227 Identities=9% Similarity=0.078 Sum_probs=117.2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEec---cCCCCeEEEEEccC---CCEEEEEec-C-----Ce
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCND---GTKFLTASY-D-----KN 366 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fspd---g~~l~s~s~-D-----g~ 366 (590)
-..-..|+|.|+ +.++ .+...|.|.+++ ......+..+. ........|+|+|+ +..|+.+.. . +.
T Consensus 30 l~~P~~ia~~pd-G~l~-V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPD-GGML-IAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTT-SCEE-EEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCC-CeEE-EEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999 7754 456679999988 22222222221 22456889999998 555554443 2 67
Q ss_pred EEEEECCCCc-----EE-EEec----CCCcceEEEEecCCCCCcEEEEEEC-------------CCeEEEEeCCCC----
Q 007768 367 IKYWDTETGQ-----VI-RTFS----TGKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDMNTK---- 419 (590)
Q Consensus 367 I~vWd~~t~~-----~~-~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~-------------dg~I~iwD~~t~---- 419 (590)
|..|+...+. .+ ..+. ..+....+.+.+++ .++++.+. .|+|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG---~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG---MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS---CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC---CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 8888876542 11 1132 12344566776654 34444321 256777766530
Q ss_pred ----------ceEEEEcCcCCceeEEEEeC-CCCEEEEEeCCCcE------EEEECCCCc------------------EE
Q 007768 420 ----------EITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSL------RVWEFGIPV------------------VI 464 (590)
Q Consensus 420 ----------~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I------~iwdl~~~~------------------~~ 464 (590)
..+... ++ .....++|+| ++.++++-.....+ .|.-+..+. ++
T Consensus 184 npf~~~~~~~~~i~a~-G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 184 NPFLGRRGARPEVYSL-GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTTTCTTSCTTEEEE-CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CcccCCCCCCccEEEE-cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 111111 22 2356788998 56555544333321 122221111 11
Q ss_pred EEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee---ecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
..+ ........++| .+|.++++....+.|...++..... ......+.. ....+..+++.|||.+.++..
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 111 12223456666 3566666655667788777654321 000111111 124567899999998776654
No 311
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.20 E-value=0.0021 Score=71.86 Aligned_cols=206 Identities=12% Similarity=0.049 Sum_probs=117.5
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCC---CeeEEEeccCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCC
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~---~~~~~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~ 375 (590)
..+..|+|.+..+.++++-...+.|+.+++... ......+.........|++.+. ++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456788999874455555556688999988320 1111122112234567888864 445555456788999998866
Q ss_pred cEEEEecC-CCcceEEEEecCCCCCcEEEEEECC-CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE-EEEeCCCc
Q 007768 376 QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSD-KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~d-g~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l-~s~s~Dg~ 452 (590)
.....+.. ...+..+++.+.. +.++++-... +.|..+++........+.......+.|+|++++.+| ++-+..+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~ 563 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred ceEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence 54444432 2345556665533 3455554333 788888876433222222334556789999875544 55556678
Q ss_pred EEEEECCCCcEEEEeec-CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007768 453 LRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
|.++++........+.. ........|++..+ .++++....+.|..++..++..+.
T Consensus 564 I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 564 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 99999865433322221 12233445666543 444455566889999976665443
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.18 E-value=0.18 Score=51.15 Aligned_cols=233 Identities=10% Similarity=0.048 Sum_probs=123.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCc-EEEEec----CCCcceEEEEecCCCCCcEEEEEEC----C----C
Q 007768 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VIRTFS----TGKIPYVVKLNPDDDKQNILLAGMS----D----K 409 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-~~~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~----d----g 409 (590)
-.....|+|.|+|+ |+++..+|.|++++ ..++ .+..+. ....+.-+++.++-.....|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997 55556679999997 3454 222221 1234556777765222234444433 3 6
Q ss_pred eEEEEeCCCC--c-----e-EEEEcC-cCCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCc-----
Q 007768 410 KIVQWDMNTK--E-----I-TQEYDQ-HLGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPV----- 462 (590)
Q Consensus 410 ~I~iwD~~t~--~-----~-~~~~~~-h~~~V~~i~~~p~~~~l~s~s~D-------------g~I~iwdl~~~~----- 462 (590)
.|..|+.... . . +..+.. .......|.|.|+|.++++.+.. |.|.-++.....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7888887654 1 1 111221 11234679999999877765432 345444443210
Q ss_pred --EEEEeecCCCCceeEEEEcC-CCCEEEEEEcCC---eEEEEEcCCce-------------eecccccccCcccccceE
Q 007768 463 --VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDN---QILIYSTRERF-------------QLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 463 --~~~~~~~~~~~~i~~i~~sp-~g~~la~~s~dg---~I~iwd~~~~~-------------~~~~~~~~~~~~~~~~v~ 523 (590)
....+...+ .....++|+| ++.++++-...+ .|.+....... .......+. .......
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~ap~ 262 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG--SETWAPS 262 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--TCCCCEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC--CCCcCCc
Confidence 001111122 2456899999 566555433222 23333211100 000011110 0123456
Q ss_pred EEEEc-------CCCCEEEEEcCCCcEEEEeCCCC-eEE--EEEe-cCCCcEEEEEEcCCCCCEEEEEe
Q 007768 524 QVNFS-------PDGRFVMSGDGEGKCWFWDWKSC-KVF--RTLK-CHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 524 ~v~~s-------pdg~~l~sgs~dg~I~iwd~~t~-~~~--~~l~-~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
.++|. .+|.++++.-..+.|...++... +.. ..+. .-...+.++++.| ++.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 78883 57877777777888999988753 332 2332 2245789999999 556666654
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.16 E-value=0.26 Score=49.87 Aligned_cols=228 Identities=11% Similarity=0.055 Sum_probs=121.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe-eEEEec---cCCCCeEEEEEccC---CCEEEEEec----C---
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-CMRTYM---GHSKAVRDISFCND---GTKFLTASY----D--- 364 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~---~h~~~V~~l~fspd---g~~l~s~s~----D--- 364 (590)
-.....|+|.|+ +. |+.+..+|.|++++. .+. .+..+. ........|+|+|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pd-G~-l~V~e~~g~I~~~d~--~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGG-GR-YLVTERPGRLVLISP--SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEET-TE-EEEEETTTEEEEECS--SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCC-Ce-EEEEeCCCEEEEEeC--CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 345789999998 66 555566799999874 443 222221 12356889999997 445554433 3
Q ss_pred -CeEEEEECCCC--c-----EE-EEec--CCCcceEEEEecCCCCCcEEEEEEC-------------CCeEEEEeCCCC-
Q 007768 365 -KNIKYWDTETG--Q-----VI-RTFS--TGKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDMNTK- 419 (590)
Q Consensus 365 -g~I~vWd~~t~--~-----~~-~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~-------------dg~I~iwD~~t~- 419 (590)
..|..|+.... . .+ ..+. ..+....+.|.+++ .++++.+. .|+|..++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG---~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG---MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS---CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC---cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 56777877654 1 11 1122 12344567777654 34444321 256766666432
Q ss_pred --------ceEEEEcCcCCceeEEEEeC-CCCEEEEEeCCC---cEEEEECCC----------------CcEEEEeecCC
Q 007768 420 --------EITQEYDQHLGAVNTITFVD-SNRRFVTSSDDK---SLRVWEFGI----------------PVVIKYISEPH 471 (590)
Q Consensus 420 --------~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg---~I~iwdl~~----------------~~~~~~~~~~~ 471 (590)
..+.. .++. ....|+|+| ++.++++-.... .|.+..-.. ..++..+. ..
T Consensus 181 p~~npf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 257 (354)
T 3a9g_A 181 PADNPFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SE 257 (354)
T ss_dssp CTTSSSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCCCCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CC
Confidence 11221 1232 346799999 565554433222 133222110 00111110 12
Q ss_pred CCceeEEEEc-------CCCCEEEEEEcCCeEEEEEcCCceeecc-cccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 472 MHSMPSISLH-------PNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 472 ~~~i~~i~~s-------p~g~~la~~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
......+++. .+|.++++....+.|..+++........ ...+.+. ...+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV--FGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT--SCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC--CCCeeEEEECCCCcEEEEEe
Confidence 2356677773 4676776666677888888864321111 1112121 34577899999997766654
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.16 E-value=0.035 Score=54.86 Aligned_cols=227 Identities=10% Similarity=0.032 Sum_probs=113.2
Q ss_pred CCEEEEEeCC----CcEEEEecCCCCeeEEEeccC-CCCe-EEEEEccCCCEEEEEec----C-----CeEEEEECCCCc
Q 007768 312 GHLILSAGMD----TKVKIWDVVNSGKCMRTYMGH-SKAV-RDISFCNDGTKFLTASY----D-----KNIKYWDTETGQ 376 (590)
Q Consensus 312 g~~L~sgs~D----g~I~iWd~~~~~~~~~~~~~h-~~~V-~~l~fspdg~~l~s~s~----D-----g~I~vWd~~t~~ 376 (590)
+.+++.|+.+ ..+.+||. ...+- ..+..- .... .+++ .-++.+++.|+. + ..+.+||+.+.+
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~-~~~~W-~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNP-SNGTW-LRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEET-TTTEE-EECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCCcceEEEEcC-CCCeE-eECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4566666532 35788887 33322 112111 0111 1122 225667777765 2 468889998876
Q ss_pred EEEEecC--CCcceEEEEecCCCCCcEEEEEECC-----CeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEEEEe
Q 007768 377 VIRTFST--GKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSS 448 (590)
Q Consensus 377 ~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s 448 (590)
....-.. ......+... ++.+++.|+.+ ..+.+||+.+.+-...-...... -.+++.. ++..++.|+
T Consensus 102 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred EeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 5443221 2222222222 22567776543 46888999877533221111111 1122222 566777776
Q ss_pred CC-----CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeecccccccCccc
Q 007768 449 DD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 449 ~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.+ ..+.+||+.+.. ......+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r- 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHRR- 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSCC-
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCCc-
Confidence 54 4588999877654322211221122233333 66777777654 568999987643 21122221111
Q ss_pred ccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe
Q 007768 519 AGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 552 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~ 552 (590)
.....+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 254 -~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 -SALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp -BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred -cceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 11111222 67777777643 357888887654
No 315
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.16 E-value=0.43 Score=52.30 Aligned_cols=156 Identities=6% Similarity=-0.030 Sum_probs=100.6
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEe-ccCCCCeEEEEEccCCCEEEEEec--CCeEEEEECCCCc
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY-MGHSKAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQ 376 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~h~~~V~~l~fspdg~~l~s~s~--Dg~I~vWd~~t~~ 376 (590)
.....|++.+.++++.++-...+.|.+.++. +.....+ ...-....+|++.|....|+.+.. .+.|...++....
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d--G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLD--GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETT--STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecC--CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 4577888887756666776777889999983 3222332 234456789999985545555442 5678888887655
Q ss_pred EEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007768 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
....+.....+..+++.+.. +.++++-...+.|..+|+..... ..+.........|++.. +..+++-...+.|...
T Consensus 158 ~~~l~~~~~~P~GlalD~~~--~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAK--RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp CEEEECSCSSEEEEEEETTT--TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred eEEEECCCCCcceEEEcccc--CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 44444445556677777643 35666666778999999976543 23333344556788764 4455555557888888
Q ss_pred ECCCC
Q 007768 457 EFGIP 461 (590)
Q Consensus 457 dl~~~ 461 (590)
|..++
T Consensus 234 dk~tg 238 (628)
T 4a0p_A 234 NKTSG 238 (628)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 86444
No 316
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.15 E-value=0.13 Score=57.76 Aligned_cols=230 Identities=10% Similarity=0.050 Sum_probs=124.0
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC---CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC
Q 007768 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST---GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~ 419 (590)
...|.+|.-..+|. |..|+.+| |..||-.. ...+.. .....+.++..+.. ..|.+|+.+ .|..||..+.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~--g~lWigT~~-Gl~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDN--TYLYMGTDN-GILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETT--TEEEEEETT-EEEEEETTTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCC--CcEEEEeCC-CeEEEeCCCC
Confidence 45789998888774 55566666 55666332 112211 11122333333322 457777765 5889999876
Q ss_pred ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee---cCCCCceeEEEEcCCCCEEEEEEcCCeE
Q 007768 420 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS---EPHMHSMPSISLHPNTNWLAAQSLDNQI 496 (590)
Q Consensus 420 ~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~---~~~~~~i~~i~~sp~g~~la~~s~dg~I 496 (590)
............|.++.. .++ .|..++.+ -|..+|..+........ ......|.++....++.+.+ ++. +-|
T Consensus 93 ~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl 167 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGL 167 (758)
T ss_dssp EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEE
T ss_pred EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCH
Confidence 433211112234666654 344 56666665 58889987655433211 11234578888887777555 444 457
Q ss_pred EEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCE
Q 007768 497 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 576 (590)
..|+..+..................|.++...+++..|..|+. +-|..+|..+++...........|.++.... ++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~l 245 (758)
T 3ott_A 168 CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDL 245 (758)
T ss_dssp EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCE
T ss_pred hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCE
Confidence 7888765432111000011111234677878777776666664 4588899877654322111233577777765 4444
Q ss_pred EEEEeCCCcEEEc
Q 007768 577 VATCGWDGLIKYW 589 (590)
Q Consensus 577 l~s~g~Dg~I~iW 589 (590)
. .|+.+| |.++
T Consensus 246 W-igT~~G-l~~~ 256 (758)
T 3ott_A 246 L-AGTDNG-LYVY 256 (758)
T ss_dssp E-EEETTE-EEEE
T ss_pred E-EEeCCc-eeEE
Confidence 3 344444 4444
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.14 E-value=0.036 Score=54.49 Aligned_cols=215 Identities=8% Similarity=0.016 Sum_probs=106.4
Q ss_pred CEEEEEecC----CeEEEEECCCCcEEEEec--CCCcceEEEEecCCCCCcEEEEEECC-----CeEEEEeCCCCceEEE
Q 007768 356 TKFLTASYD----KNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQE 424 (590)
Q Consensus 356 ~~l~s~s~D----g~I~vWd~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~t~~~~~~ 424 (590)
..++.|+.+ ..+.++|+.+.+....-. .......+... +..+++.|+.+ ..+.+||+.+.+-...
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM----AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE----CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 345555543 457888988776443321 11112222222 23577777754 3588999988753332
Q ss_pred EcCcCCc-eeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-----
Q 007768 425 YDQHLGA-VNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD----- 493 (590)
Q Consensus 425 ~~~h~~~-V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d----- 493 (590)
-...... -.+++.. ++..++.|+.++ .+.+||+.+..-...-..+....-.+++.. ++++++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTE
T ss_pred CCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCc
Confidence 2111111 1222222 566777777553 577888877654333222222222233332 56666666542
Q ss_pred --CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeEEEE--EecCCCcE
Q 007768 494 --NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKCHEGVC 564 (590)
Q Consensus 494 --g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~~~~~--l~~h~~~V 564 (590)
..+.+||+.+.. ......+.... .....+.+ ++++++.|+.+ ..+.+||..+.+-... +.......
T Consensus 171 ~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 171 CLSTVECYNATTNE-WTYIAEMSTRR--SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred cccEEEEEeCCCCc-EEECCCCcccc--ccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 458889987642 11111111111 11112222 67777777654 3689999887643321 11111111
Q ss_pred EEEEEcCCCCCEEEEEeCCC
Q 007768 565 IGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~Dg 584 (590)
..+.+ ++.+++.||.++
T Consensus 246 ~~~~~---~~~i~v~GG~~~ 262 (302)
T 2xn4_A 246 GVCAV---NGLLYVVGGDDG 262 (302)
T ss_dssp EEEEE---TTEEEEECCBCS
T ss_pred eEEEE---CCEEEEECCcCC
Confidence 22222 456777777654
No 318
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.10 E-value=0.11 Score=51.59 Aligned_cols=227 Identities=7% Similarity=0.093 Sum_probs=111.6
Q ss_pred EEEEEeCCCcEEEEecCCCCeeEE-EeccCCCCeEEEEEccCCCEEEEEec----CC-------eEEEEECCCCcEEEEe
Q 007768 314 LILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY----DK-------NIKYWDTETGQVIRTF 381 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~----Dg-------~I~vWd~~t~~~~~~~ 381 (590)
+++.|+. .+.+||.. ..+-.. ............+...++..++.|+. ++ .+.+||..+.+....-
T Consensus 18 i~~~GG~--~~~~yd~~-~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPM-ENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETT-TTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCC-CCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 37788873 333222 22211122223333456778888873 11 2778898877654432
Q ss_pred cC--CCcceEEEEecCCCCCcEEEEEECC-------CeEEEEeCCCCceEEEEcCcCCce-eEEEEeCCCCEEEEEeC--
Q 007768 382 ST--GKIPYVVKLNPDDDKQNILLAGMSD-------KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDSNRRFVTSSD-- 449 (590)
Q Consensus 382 ~~--~~~~~~~~~~~~~~~~~~lvsg~~d-------g~I~iwD~~t~~~~~~~~~h~~~V-~~i~~~p~~~~l~s~s~-- 449 (590)
.. ......+... +..+++.|+.+ ..+.+||+.+.+-...-....... .+++. .++..++.|+.
T Consensus 95 ~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 169 (318)
T 2woz_A 95 PLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTD 169 (318)
T ss_dssp CBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEES
T ss_pred CCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCC
Confidence 21 1112222222 23577777754 358889998775333211111111 12222 35666677653
Q ss_pred ----CCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeecccccccCccccc
Q 007768 450 ----DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 450 ----Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
-..+.+||+.+..-...-..+....-.+++.. ++++++.|+.+ ..+.+||+.+.. ......+.... .
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~ 245 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQER--S 245 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCC--B
T ss_pred CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcc--c
Confidence 24589999987654333222222222233333 56677777643 357788886542 21122221111 1
Q ss_pred ceEEEEEcCCCCEEEEEcCC--------------CcEEEEeCCCCeEE
Q 007768 521 YACQVNFSPDGRFVMSGDGE--------------GKCWFWDWKSCKVF 554 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~d--------------g~I~iwd~~t~~~~ 554 (590)
....+. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 111122 256777777643 35888998876543
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.09 E-value=0.045 Score=53.88 Aligned_cols=214 Identities=7% Similarity=-0.005 Sum_probs=109.3
Q ss_pred EEEEEec--CCeEEEEECCCCcEEEEecC--CCcceEEEEecCCCCCcEEEEEECC----CeEEEEeCCCCceEEEEcCc
Q 007768 357 KFLTASY--DKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSD----KKIVQWDMNTKEITQEYDQH 428 (590)
Q Consensus 357 ~l~s~s~--Dg~I~vWd~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~d----g~I~iwD~~t~~~~~~~~~h 428 (590)
+++.|+. ...+.+||..+.+....-.. ......+... +..+++.|+.+ ..+.+||+.+.+-...-...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 4555554 35788999988765433221 2222222222 22577777754 67899999887543332211
Q ss_pred CCce-eEEEEeCCCCEEEEEeCC------CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc---------
Q 007768 429 LGAV-NTITFVDSNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--------- 492 (590)
Q Consensus 429 ~~~V-~~i~~~p~~~~l~s~s~D------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~--------- 492 (590)
.... .+++.. ++..++.|+.+ ..+.+||..+..-...-..+....-.+++.. ++++++.|+.
T Consensus 90 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 90 TPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp SCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEE
T ss_pred ccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccc
Confidence 1111 222222 56677777755 4688999887754333222222222233332 5666666653
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeEEE--EEecCCCcEE
Q 007768 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFR--TLKCHEGVCI 565 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~~~~--~l~~h~~~V~ 565 (590)
-..+.+||+.+.. ......+.... .....+.+ ++++++.|+.+ ..+.+||..+.+-.. .+........
T Consensus 168 ~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 168 LNSCEVYDPATET-WTELCPMIEAR--KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp CCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred cceEEEeCCCCCe-EEECCCccchh--hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence 3458899987642 11111111111 11111222 67777777643 358999988754222 1211111223
Q ss_pred EEEEcCCCCCEEEEEeCCC
Q 007768 566 GCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 566 ~v~~sp~~~~~l~s~g~Dg 584 (590)
.+.+ ++.+++.||.++
T Consensus 243 ~~~~---~~~i~v~GG~~~ 258 (306)
T 3ii7_A 243 CAAV---GSIVYVLAGFQG 258 (306)
T ss_dssp EEEE---TTEEEEEECBCS
T ss_pred EEEE---CCEEEEEeCcCC
Confidence 3333 456788888653
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0062 Score=61.38 Aligned_cols=197 Identities=10% Similarity=0.040 Sum_probs=108.9
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEecCC--CcceEEEEecCCCCCcEEEEE-ECCCeEEEEeCCCCceEEEEcC----c
Q 007768 356 TKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQ----H 428 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg-~~dg~I~iwD~~t~~~~~~~~~----h 428 (590)
.+++.++.||.|.-+|..+|+.+..+... .......-......+..++.. ..||.|+.++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999999999998765 222211101111122333333 5899999999998865544421 1
Q ss_pred CCceeE---EEE-----eCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCc------eeEEEEc-----CCCCEEEE
Q 007768 429 LGAVNT---ITF-----VDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS------MPSISLH-----PNTNWLAA 489 (590)
Q Consensus 429 ~~~V~~---i~~-----~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~------i~~i~~s-----p~g~~la~ 489 (590)
..++.. ..+ ...+..+++++.+|.+...|+.+++.+..+....... ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122211 000 0145688999999999999999999988875432111 0111111 12456777
Q ss_pred EEcCCeEEEEEcCCceeecccc--cccCcccccce-EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEE
Q 007768 490 QSLDNQILIYSTRERFQLNKKK--RFAGHIVAGYA-CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~v-~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
+..+..+.+.+ +++. ..... .+........+ ....++.|+.+ +.++.||.|+.+|..+|..+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77666666655 3332 11100 00000000000 00011234666 446778888888888888765
No 321
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.06 E-value=0.61 Score=52.25 Aligned_cols=300 Identities=9% Similarity=0.073 Sum_probs=156.8
Q ss_pred ccccccceeecCCccccccCCCc---cCCcceEEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEe
Q 007768 263 ETDYQGRSWIAPPKDAKAANDHC---YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY 339 (590)
Q Consensus 263 ~~d~~~r~w~~~~~~~~~~~~~~---~~p~~~i~~l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~ 339 (590)
..|..|..|+.....+...+... +.+.. ......|.+|....+ ..|..|+.+| +..||.. ........
T Consensus 28 ~qD~~G~lWigT~~GL~ryDG~~~~~~~~~~-----~~~~~~i~~i~~d~~--g~lWigT~~G-l~~yd~~-~~~f~~~~ 98 (758)
T 3ott_A 28 LQDSEGLIWIGSNKGLFSYDGYSTQQHFTYG-----ENNNTRIYCGVIIDN--TYLYMGTDNG-ILVYNYR-ADRYEQPE 98 (758)
T ss_dssp EECTTSCEEEEESSCEEEECSSCEEECSCTT-----STTSSCEEEEEEETT--TEEEEEETTE-EEEEETT-TTEECCCS
T ss_pred EECCCCCEEEEECCCccccCCCceEEEEccC-----CCCCceEEEEEEcCC--CcEEEEeCCC-eEEEeCC-CCEEECcc
Confidence 35788899988655543222111 11100 112356888877665 4677777666 7788873 33322111
Q ss_pred ccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec---CCCcceEEEEecCCCCCcEEEEEECCCeEEEEeC
Q 007768 340 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 340 ~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 416 (590)
......|.++.. .+| .|..++.+ -|..+|..+++...... .-....+.++..+.. +. +.+|+. +.|..++.
T Consensus 99 ~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g~-lWigt~-~Gl~~~~~ 172 (758)
T 3ott_A 99 TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKD-NQ-IYVGTY-NGLCRYIP 172 (758)
T ss_dssp CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTT-CC-EEEEET-TEEEEEET
T ss_pred cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCC-CC-EEEEeC-CCHhhCcc
Confidence 112335777754 355 56666665 68889988766543311 111122334444332 23 555655 45888898
Q ss_pred CCCceEEEEcC-----cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE
Q 007768 417 NTKEITQEYDQ-----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 417 ~t~~~~~~~~~-----h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s 491 (590)
.+++....... ....|.++....++..|..|+. +-|..++..+...... .......|.++....+|.+.+ |+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWi-gT 249 (758)
T 3ott_A 173 SNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQT-EAFHNNSIKSLALDGNGDLLA-GT 249 (758)
T ss_dssp TTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEE-EEEEEEEEEEEEECTTCCEEE-EE
T ss_pred CCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEec-cCCCCCeEEEEEEcCCCCEEE-Ee
Confidence 77654322111 1224788888777776666654 4588889776543322 111234578888887776554 44
Q ss_pred cCCeEEEEEcCCceeeccccc--ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe-------cCCC
Q 007768 492 LDNQILIYSTRERFQLNKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-------CHEG 562 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-------~h~~ 562 (590)
. +-+.+++..+......... .........|.++....+|.+.+ |+..| |.++.... ....+. ....
T Consensus 250 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~ 324 (758)
T 3ott_A 250 D-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQITGTGDGN 324 (758)
T ss_dssp T-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHSCSCCCC
T ss_pred C-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCCCCCCCc
Confidence 4 4588888765321111000 00112234577888888776544 44556 55543322 122221 1123
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCcEE
Q 007768 563 VCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~Dg~I~ 587 (590)
.|.++.-.. ++.+ -.|+.+|.++
T Consensus 325 ~v~~i~~D~-~g~l-WiGt~~Gl~~ 347 (758)
T 3ott_A 325 QFYSLFRDS-KGFY-WFGGANGLIR 347 (758)
T ss_dssp BEEEEEECT-TCCE-EEEETTEEEE
T ss_pred eEEEEEEcC-CCCE-EEeeCCccee
Confidence 577777665 3433 3344455433
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.99 E-value=0.05 Score=63.88 Aligned_cols=238 Identities=11% Similarity=0.098 Sum_probs=139.9
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcE
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
..|.|-|+.+.....+.-..- -+.-.+|..+.|+.-. ..++.|+|+++...+..+.....+ +-|.|.+.. .
T Consensus 48 ~~vvIidl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~V--vfWkWis~~--~ 118 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDV--TFWKWISLN--T 118 (1630)
T ss_pred ceEEEEECCCCCCcccccccc----hhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCc--eEEEecCCC--e
Confidence 378888885544443332222 2234567666666554 689999999999988888776654 444444442 2
Q ss_pred EEEEECCCeEEEEeCCC-CceEEEEcCc----CCceeEEEEeCCCCEEEEEe-------CCCcEEEEECCCCcEEEEeec
Q 007768 402 LLAGMSDKKIVQWDMNT-KEITQEYDQH----LGAVNTITFVDSNRRFVTSS-------DDKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 402 lvsg~~dg~I~iwD~~t-~~~~~~~~~h----~~~V~~i~~~p~~~~l~s~s-------~Dg~I~iwdl~~~~~~~~~~~ 469 (590)
|... ++..|+.|++.. ..++..+..| ...|..-..+++.++++..+ -.|.+.+|....... ....
T Consensus 119 l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~ie 195 (1630)
T 1xi4_A 119 VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIE 195 (1630)
T ss_pred eEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hhhh
Confidence 3322 357899999964 2454455555 45677777888888877554 347888888754432 2222
Q ss_pred CCCCceeEEEEcC---CCCEEEEEEc---CCeEEEEEcCCc---eeecccc----cccCcccccceEEEEEcCCCCEEEE
Q 007768 470 PHMHSMPSISLHP---NTNWLAAQSL---DNQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 470 ~~~~~i~~i~~sp---~g~~la~~s~---dg~I~iwd~~~~---~~~~~~~----~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
+|......+.+.. ....++.+.. .+.++|.++... ......+ .+...........+..|+.-..+..
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 3333332222221 1223333322 268888887542 1111111 1111111233446888888888999
Q ss_pred EcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcC
Q 007768 537 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 537 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
-+.-|.|+++|+.|+.++..-+....+|...+-+.
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~ 310 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE 310 (1630)
T ss_pred EecCceEEEEecccchhhhhccccCCceEEeccCC
Confidence 99999999999999998766555555555444443
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.79 E-value=0.062 Score=53.07 Aligned_cols=217 Identities=9% Similarity=0.007 Sum_probs=107.6
Q ss_pred CCCEEEEEecC----CeEEEEECCCCcEEEEec--CCCcceEEEEecCCCCCcEEEEEEC----C-----CeEEEEeCCC
Q 007768 354 DGTKFLTASYD----KNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMS----D-----KKIVQWDMNT 418 (590)
Q Consensus 354 dg~~l~s~s~D----g~I~vWd~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~----d-----g~I~iwD~~t 418 (590)
++..++.|+.+ ..+.++|..+.+....-. .......+... +..+++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV----GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE----CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 45556666532 468888988776544321 11122222222 2256777665 2 4688999987
Q ss_pred CceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc
Q 007768 419 KEITQEYDQHLGA-VNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 419 ~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~ 492 (590)
.+-...-...... -.+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred CeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCC
Confidence 7533221111111 1222222 56677776643 4688899877654332211221122233333 5667777765
Q ss_pred C-----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeEEEE--EecC
Q 007768 493 D-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKCH 560 (590)
Q Consensus 493 d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~~~~~--l~~h 560 (590)
+ +.+.+||+.+.. ........... .....+.+ ++++++.|+.+ ..+.+||+.+.+-... +...
T Consensus 178 ~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNE-WRMITAMNTIR--SGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp CSSCBCCCEEEEETTTTE-EEECCCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred CCCCcCceEEEEeCCCCe-EeeCCCCCCcc--ccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 4 468899986643 11111111111 11112223 67777777654 4699999887643221 1111
Q ss_pred CCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 561 EGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 561 ~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
......+.+ ++.+++.||.++
T Consensus 253 r~~~~~~~~---~~~i~v~GG~~~ 273 (308)
T 1zgk_A 253 RSALGITVH---QGRIYVLGGYDG 273 (308)
T ss_dssp CBSCEEEEE---TTEEEEECCBCS
T ss_pred ccceEEEEE---CCEEEEEcCcCC
Confidence 111122222 456777777653
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.73 E-value=0.34 Score=48.95 Aligned_cols=233 Identities=10% Similarity=0.110 Sum_probs=119.8
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEe-------ccCCCCeEEEEEccC---CCEEEEE-ec-----
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY-------MGHSKAVRDISFCND---GTKFLTA-SY----- 363 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-------~~h~~~V~~l~fspd---g~~l~s~-s~----- 363 (590)
.....|+|.|+ +..|+.+...|.|++++. .+.....+ .........|+|+|+ +..|+.+ +.
T Consensus 18 ~~P~~i~~~pd-G~~l~V~e~~G~i~~~~~--~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPD-NHGMLITLRGGELRHWQA--GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECST-TCCEEEEETTTEEEEEET--TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCC-CCEEEEEeCCceEEEEeC--CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 45689999999 773445567899999885 33321111 122345789999995 4444444 32
Q ss_pred --CCeEEEEECCCC--c--EEE----Eec----CCCcceEEEEecCCCCCcEEEEEEC-------------CCeEEEEeC
Q 007768 364 --DKNIKYWDTETG--Q--VIR----TFS----TGKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDM 416 (590)
Q Consensus 364 --Dg~I~vWd~~t~--~--~~~----~~~----~~~~~~~~~~~~~~~~~~~lvsg~~-------------dg~I~iwD~ 416 (590)
...|..|++... . ... .+. ..+....+.|.+++ .++++.+. .|+|.-++.
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG---~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG---YLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS---EEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC---cEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 235666666533 1 111 111 12344567777754 34444322 256777776
Q ss_pred CCC--------------ceEEEEcCcCCceeEEEEeCCCCEEEEEeCC--CcEEEEECCCCc------------------
Q 007768 417 NTK--------------EITQEYDQHLGAVNTITFVDSNRRFVTSSDD--KSLRVWEFGIPV------------------ 462 (590)
Q Consensus 417 ~t~--------------~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D--g~I~iwdl~~~~------------------ 462 (590)
... ..+..+ ++ .....++|.|....|.++... +.=.|.-+..+.
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~-G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSY-GI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEE-CC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCCCCCcCCCCCCccEEEE-cC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 532 111111 22 346789999943344444322 111221111100
Q ss_pred -------------EEEEeecCCCCceeEEEEcC-------CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007768 463 -------------VIKYISEPHMHSMPSISLHP-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 463 -------------~~~~~~~~~~~~i~~i~~sp-------~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
++..+ .+......+.|.. ++.++++....+.|...++...........+.. ....+
T Consensus 250 ~~~~~~~~~~~~~P~~~~--~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~rp 325 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYW--KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTD--RGQRI 325 (353)
T ss_dssp TTCCBSSCTTSCCCSEEE--SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGG--GCCCE
T ss_pred CcccCCCCCCccCCeEEe--CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccC--CCCce
Confidence 00011 1223456677753 466777666778888888765432221111111 12457
Q ss_pred EEEEEcCCCCEEEEEc-CCCcEE
Q 007768 523 CQVNFSPDGRFVMSGD-GEGKCW 544 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs-~dg~I~ 544 (590)
..+++.|||.+.++.+ .+|.|+
T Consensus 326 ~~v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp EEEEECTTSCEEEEECSTTEEEE
T ss_pred eEEEECCCCcEEEEEeCCCCEEE
Confidence 7899999998766543 345443
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.59 E-value=0.11 Score=51.33 Aligned_cols=211 Identities=10% Similarity=0.013 Sum_probs=104.0
Q ss_pred EEEEecCCeEEEEECCCCcEEEEecCC--CcceEEEEecCCCCCcEEEEEEC-----C------CeEEEEeCCCCceEEE
Q 007768 358 FLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMS-----D------KKIVQWDMNTKEITQE 424 (590)
Q Consensus 358 l~s~s~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~-----d------g~I~iwD~~t~~~~~~ 424 (590)
++.|+ ..+.+||..+++-.. .... ......+.... +..+++.|+. . ..+.+||+.+.+-...
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 44454 679999999887543 2221 12222222222 2367777773 1 2378899988753221
Q ss_pred EcCcCCce-eEEEEeCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc-C-
Q 007768 425 YDQHLGAV-NTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D- 493 (590)
Q Consensus 425 ~~~h~~~V-~~i~~~p~~~~l~s~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~-d- 493 (590)
-....... .+++.. ++..++.|+.+ ..+.+||..+..-...-..+....-.+++. -++++++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTT
T ss_pred CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCC
Confidence 11111111 122222 56666777632 458899987765332211122112222333 35667777765 2
Q ss_pred ----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-----cEEEEeCCCCeEEEE--EecCCC
Q 007768 494 ----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSCKVFRT--LKCHEG 562 (590)
Q Consensus 494 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-----~I~iwd~~t~~~~~~--l~~h~~ 562 (590)
+.+.+||+.+.. ........... .....+.+ ++++++.|+.++ .+.+||..+.+-... +.....
T Consensus 161 ~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE-WKELAPMQTAR--SLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp SCBCCCEEEEETTTTE-EEECCCCSSCC--BSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CcccceEEEEeCCCCe-EEECCCCCCch--hceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 468999987642 11112111111 11112222 677777777544 588999877643322 111111
Q ss_pred cEEEEEEcCCCCCEEEEEeCC
Q 007768 563 VCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~D 583 (590)
....+.+ ++.+++.||.+
T Consensus 236 ~~~~~~~---~~~l~v~GG~~ 253 (315)
T 4asc_A 236 SLSLVSL---VGTLYAIGGFA 253 (315)
T ss_dssp SCEEEEE---TTEEEEEEEEE
T ss_pred ceeEEEE---CCEEEEECCcc
Confidence 1122333 45677777764
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.58 E-value=0.68 Score=45.91 Aligned_cols=195 Identities=13% Similarity=0.201 Sum_probs=122.4
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CcEEEEecCCC
Q 007768 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGK 385 (590)
Q Consensus 307 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~~~ 385 (590)
.+|. .+.||.-. ..++.|+|+ +....+..+.- ...|.-=.|-.+ +.|+..+ +..|.-|+++. ..+.+.|..+.
T Consensus 74 MnP~-~~ViALra-g~~LQiFnl-etK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 74 MNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp ECSS-SSEEEEEE-TTEEEEEET-TTTEEEEEEEC-SSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eCCC-ccEEEEec-CCeEEEech-HHhhhhcceec-CCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 5777 66666655 678999999 57777766654 356766667644 3455444 46899999974 34555554322
Q ss_pred ---cceEEEEecCCCCCcEEEEEE------CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC---CCEEEEEeC---C
Q 007768 386 ---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---NRRFVTSSD---D 450 (590)
Q Consensus 386 ---~~~~~~~~~~~~~~~~lvsg~------~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~---~~~l~s~s~---D 450 (590)
...++.+..+.+..=++++|- -.|.+.+|..+.+ ..+.+.+|.+.-..+.+..+ ...|+.+.. .
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 244566666655544555553 2478889988754 55677777665544433211 112333322 2
Q ss_pred CcEEEEECCCC--------cEEEEeecC---CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007768 451 KSLRVWEFGIP--------VVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 451 g~I~iwdl~~~--------~~~~~~~~~---~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
+.++|.++..+ +....+..+ ...-..++.+++....++.-+.-|.|++||+.++..+.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 58999998543 111222112 23446678889888999999999999999999987663
No 327
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.35 E-value=0.19 Score=50.49 Aligned_cols=220 Identities=11% Similarity=0.110 Sum_probs=104.9
Q ss_pred CCCEEEEEecC-CeEEEEECCC--CcEEEE--ec-CCCcceEEEEecCCCCCcEEEEEEC-C---------CeEEEEeCC
Q 007768 354 DGTKFLTASYD-KNIKYWDTET--GQVIRT--FS-TGKIPYVVKLNPDDDKQNILLAGMS-D---------KKIVQWDMN 417 (590)
Q Consensus 354 dg~~l~s~s~D-g~I~vWd~~t--~~~~~~--~~-~~~~~~~~~~~~~~~~~~~lvsg~~-d---------g~I~iwD~~ 417 (590)
++..++.|+.+ ..+.++|+.+ .+.... +. .......+... +..+++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI----DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE----TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE----CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 55566666543 4688888864 333222 22 12222223322 1256777665 2 468899998
Q ss_pred CCceEEEEcCc-CCceeEEEEeCCCCEEEEEeCC---------------------------------------CcEEEEE
Q 007768 418 TKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDD---------------------------------------KSLRVWE 457 (590)
Q Consensus 418 t~~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~D---------------------------------------g~I~iwd 457 (590)
+.+-...-... .......+...+++.++.|+.+ ..+.+||
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 87533221111 1112222222467778888754 5788999
Q ss_pred CCCCcEEEEeecCCCCce-eEEEEcCCCCEEEEEEc------CCeEEEEEc--CCceeecccccccCcccccceEEEEEc
Q 007768 458 FGIPVVIKYISEPHMHSM-PSISLHPNTNWLAAQSL------DNQILIYST--RERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i-~~i~~sp~g~~la~~s~------dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
..+..-...-..+..... .+++.. ++.+++.|+. ...+.+|++ .+. .......+......... .+..
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-~W~~~~~~~~~~~~~~~--~~~~ 250 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-KWNKLAPVSSPDGVAGG--FAGI 250 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-EEEECCCSSTTTCCBSC--EEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-cEEecCCCCCCcccccc--eEEE
Confidence 887654433222221112 333333 5566666653 345777876 322 12111111111000011 1222
Q ss_pred CCCCEEEEEcCC----------------------CcEEEEeCCCCe--EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 529 PDGRFVMSGDGE----------------------GKCWFWDWKSCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 529 pdg~~l~sgs~d----------------------g~I~iwd~~t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
.++++++.|+.+ ..+.+||+.+.+ .+..+........++.+ ++.+++.||.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~ 327 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETA 327 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECG
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCC
Confidence 366777777632 257889987643 34333322222223333 566888888654
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.34 E-value=1.2 Score=45.95 Aligned_cols=196 Identities=13% Similarity=0.191 Sum_probs=123.9
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CcEEEEecCC
Q 007768 306 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTG 384 (590)
Q Consensus 306 ~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~~ 384 (590)
-.+|. .+.||.=. ..++.|+|+ +....+..+.-. ..|.-=.|-.+ +.|+..+ +..|.-|+++. ..+.+.|..+
T Consensus 72 IMnP~-~~iiALra-g~~lQiFnl-e~K~klks~~~~-e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 72 IMNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EECSS-SSCEEEEE-TTEEEEEET-TTTEEEEEEECS-SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeCCC-CcEEEEec-CCeEEEEch-HHhhhhcceecC-CCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 35676 55555554 678999999 577777766544 35666666544 3455443 47899999974 3455555432
Q ss_pred C---cceEEEEecCCCCCcEEEEEE------CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC---CEEEEEeC---
Q 007768 385 K---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN---RRFVTSSD--- 449 (590)
Q Consensus 385 ~---~~~~~~~~~~~~~~~~lvsg~------~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~---~~l~s~s~--- 449 (590)
. ...++.+..+.+..=++++|- -.|.+.+|..+.+ ..+.+.+|.+.-..+.+..+. ..|..+..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 2 244566666655544555553 2478889988755 456777887665554443211 23444433
Q ss_pred CCcEEEEECCCC--------cEEEEeecC---CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007768 450 DKSLRVWEFGIP--------VVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 450 Dg~I~iwdl~~~--------~~~~~~~~~---~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
.+.++|.++..+ +....+..+ ...-..++.+++....++..+.-|.|.+||+.++..+.
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 278999998543 112222112 23346678899999999999999999999999987663
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.079 Score=53.25 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=105.6
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEeccC-CCCeEEEEEc--c-CCCEEEEE-ecCCeEEEEECCCCcEEEEecCCCc
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFC--N-DGTKFLTA-SYDKNIKYWDTETGQVIRTFSTGKI 386 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fs--p-dg~~l~s~-s~Dg~I~vWd~~t~~~~~~~~~~~~ 386 (590)
+.+++.++.||.|.-.|. .+++.+..+... ..++....-. + ++..++.. +.||.|..++..+|.....+.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~-~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDR-RNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEET-TTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEEC-CCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 357899999999999998 688888887654 1222221100 1 22333343 5899999999999866655543211
Q ss_pred ----ceEEEEecCC------CCCcEEEEEECCCeEEEEeCCCCceEEEEcCcC--Cc-----eeEEEEe-----CCCCEE
Q 007768 387 ----PYVVKLNPDD------DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL--GA-----VNTITFV-----DSNRRF 444 (590)
Q Consensus 387 ----~~~~~~~~~~------~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~--~~-----V~~i~~~-----p~~~~l 444 (590)
+....-.|-- .....+++|+.+|.+...|+++|+.+..+.... +. ..|.... ..+..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1111111100 023578999999999999999999999986421 11 1111111 123466
Q ss_pred EEEeCCCcEEEEECCCCcE----EEEeecCCCC-ce-eEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007768 445 VTSSDDKSLRVWEFGIPVV----IKYISEPHMH-SM-PSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~----~~~~~~~~~~-~i-~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~ 507 (590)
+.+..+..+.+.+ +++.. .......... .+ .....+.++.+ ++++.||.|..+|..++..+
T Consensus 169 ~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 6666666666554 22210 0000000000 00 00001123555 45788999999998776654
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.22 E-value=0.089 Score=53.32 Aligned_cols=156 Identities=10% Similarity=0.069 Sum_probs=87.0
Q ss_pred ceeEEEEeCCCCEEEEE------------eCCCcEEEEECCCC--cEEE-EeecC----CCCceeEEEEcC--CCC-EEE
Q 007768 431 AVNTITFVDSNRRFVTS------------SDDKSLRVWEFGIP--VVIK-YISEP----HMHSMPSISLHP--NTN-WLA 488 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~------------s~Dg~I~iwdl~~~--~~~~-~~~~~----~~~~i~~i~~sp--~g~-~la 488 (590)
..-.|...|+|..++++ ..+|.|.++|+... .... .+... .......|.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566677766554444 26899999998742 2211 12111 123456677755 343 344
Q ss_pred EE-Ec--CCeEEEEEcCCc-eeecccccccCcccccceEEEEEcCCCCEEEEEc-----------------CCCcEEEEe
Q 007768 489 AQ-SL--DNQILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-----------------GEGKCWFWD 547 (590)
Q Consensus 489 ~~-s~--dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-----------------~dg~I~iwd 547 (590)
++ .. +..|.+|++... ........+.+. .-.....+.+.++|++.++.. ..|.|+-+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 43 33 467888876542 222223344443 234577899999999888765 135566666
Q ss_pred CCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcEEEcC
Q 007768 548 WKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iWD 590 (590)
.. +.. .+...-...+.++|+|++..+.++-+..+.|..||
T Consensus 210 ~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 210 PN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp TT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence 53 322 22222234689999994444444445567777664
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.18 E-value=0.22 Score=51.22 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=88.6
Q ss_pred CCeEEEEeCCCCceEEEEcCc----CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC------------cEEEEeecC-
Q 007768 408 DKKIVQWDMNTKEITQEYDQH----LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP------------VVIKYISEP- 470 (590)
Q Consensus 408 dg~I~iwD~~t~~~~~~~~~h----~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~------------~~~~~~~~~- 470 (590)
++.||.-++.....-+.+... ...|..+..+|+|.+|+..+. ..|.|-.+..+ ...+.+...
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 366676666643333333322 336888999999999988864 57888887622 112232221
Q ss_pred ----CCCceeEEEEcCC---CCEEEEEEcCCeEEEEEcCCceeecc-cc----cccCcccccceEEEEEcCCCCEEEEEc
Q 007768 471 ----HMHSMPSISLHPN---TNWLAAQSLDNQILIYSTRERFQLNK-KK----RFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 471 ----~~~~i~~i~~sp~---g~~la~~s~dg~I~iwd~~~~~~~~~-~~----~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
...+|..+.|||- +..|++-..|+.|++||+........ +. .+........+.+++|..+|-.|+..+
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 2467999999995 56899999999999999976321111 11 111111124578999999887777744
Q ss_pred --CCCcEEEE
Q 007768 539 --GEGKCWFW 546 (590)
Q Consensus 539 --~dg~I~iw 546 (590)
..|.|+-.
T Consensus 199 ~t~~GDIYAl 208 (452)
T 3pbp_A 199 TTEGGDIFAF 208 (452)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCCCEEEE
Confidence 88888765
No 332
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.18 E-value=1.3 Score=44.69 Aligned_cols=240 Identities=10% Similarity=0.024 Sum_probs=121.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEec-------C-CCcceEEEEecCCC-CCcEEEEEEC-------
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-------T-GKIPYVVKLNPDDD-KQNILLAGMS------- 407 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~-------~-~~~~~~~~~~~~~~-~~~~lvsg~~------- 407 (590)
.....|+|.|+|+.|+.+...|.|++++.. +.....+. . ......+++.|+-. ++.++++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456899999999845555678999999853 33211111 1 12234566666410 2234444332
Q ss_pred CCeEEEEeCCCC--ce--EEE-EcC------cCCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCc-
Q 007768 408 DKKIVQWDMNTK--EI--TQE-YDQ------HLGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPV- 462 (590)
Q Consensus 408 dg~I~iwD~~t~--~~--~~~-~~~------h~~~V~~i~~~p~~~~l~s~s~D-------------g~I~iwdl~~~~- 462 (590)
...|..|++... .+ ... +.. .......|.|.|+|.++++.+.. |.|.-++.....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235777766532 11 111 111 11123679999999666665442 356666654320
Q ss_pred -----------EEEEeecCCCCceeEEEEcCCCCEEEEEEcCC--eEEEEEcCCceee----------------c-----
Q 007768 463 -----------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQL----------------N----- 508 (590)
Q Consensus 463 -----------~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg--~I~iwd~~~~~~~----------------~----- 508 (590)
....+...+ .....++|+|....|.++.... .=.|.-+..+... .
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111111122 3467899999433444443321 1122111111100 0
Q ss_pred ccccccCc----ccccceEEEEEcC-------CCCEEEEEcCCCcEEEEeCCCCeEEEEEe---cCCCcEEEEEEcCCCC
Q 007768 509 KKKRFAGH----IVAGYACQVNFSP-------DGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 509 ~~~~~~~~----~~~~~v~~v~~sp-------dg~~l~sgs~dg~I~iwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~ 574 (590)
....+... ......+.+.|.. +|.++++.-..+.|...++..++...... .....+..+++.| ++
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DG 334 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TS
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CC
Confidence 00000000 0012355677753 57777777778888888887665443322 2234789999999 55
Q ss_pred CEEEEEe-CCCcE
Q 007768 575 SKVATCG-WDGLI 586 (590)
Q Consensus 575 ~~l~s~g-~Dg~I 586 (590)
.++++.. .+|.|
T Consensus 335 ~lyv~td~~~g~I 347 (353)
T 2g8s_A 335 YLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEECSTTEEE
T ss_pred cEEEEEeCCCCEE
Confidence 5555433 45554
No 333
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.09 E-value=1.9 Score=45.87 Aligned_cols=245 Identities=12% Similarity=0.112 Sum_probs=137.7
Q ss_pred EEEEEeCCCcEEEEecCCCCeeEEEeccC-------------------------CCCe--EEEEEcc---CCCEEEEEec
Q 007768 314 LILSAGMDTKVKIWDVVNSGKCMRTYMGH-------------------------SKAV--RDISFCN---DGTKFLTASY 363 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------------------------~~~V--~~l~fsp---dg~~l~s~s~ 363 (590)
.+.||+..|.|+|+-+ .+.+.+..+.-. .+.. ..+++.. ||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~-PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGV-PSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEECGGGCCEEEEEE-TTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEeecCcCceEEEEec-CCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 4678888899999988 566666554210 0111 1234432 6778877664
Q ss_pred -CCeEEEEECCCCcEEEEecCCCc--ceEEEEecCCCCCcEEEEEEC-------CCeE------------EEEeCCCCce
Q 007768 364 -DKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS-------DKKI------------VQWDMNTKEI 421 (590)
Q Consensus 364 -Dg~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~-------dg~I------------~iwD~~t~~~ 421 (590)
+..|...++...++-..+..+.. ...+++... .+..++++++. ||.. ...|..+.+.
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~-p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKV-PHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCS-SBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCccccccccc-CCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence 57788889999888776655443 334444321 23356666653 2221 1123333333
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCC---------------cEEEEE-------------------------CCC-
Q 007768 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDK---------------SLRVWE-------------------------FGI- 460 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg---------------~I~iwd-------------------------l~~- 460 (590)
...+.- .+....+...+++.+.++.|.+. .+.+++ .+.
T Consensus 230 ~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~ 308 (638)
T 3sbq_A 230 AFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKK 308 (638)
T ss_dssp EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCB
T ss_pred EEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccc
Confidence 322211 12233344566777777766321 244444 332
Q ss_pred ----CcEEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceee------cccccc-cCcccccceEEEEEc
Q 007768 461 ----PVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL------NKKKRF-AGHIVAGYACQVNFS 528 (590)
Q Consensus 461 ----~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~------~~~~~~-~~~~~~~~v~~v~~s 528 (590)
......+ +...+...+.++|+|+++++++ .+.++.++|+...... ...... ......-.....+|.
T Consensus 309 ~~~~~~~~~~i--P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd 386 (638)
T 3sbq_A 309 DGKDSKFTRYV--PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD 386 (638)
T ss_dssp TTBCCSSEEEE--EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC
T ss_pred cccCCceEEEE--eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC
Confidence 1122222 2233456788999999988876 5688999998753221 111111 111122334568999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCC----------eEEEEEecCCCc
Q 007768 529 PDGRFVMSGDGEGKCWFWDWKSC----------KVFRTLKCHEGV 563 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~----------~~~~~l~~h~~~ 563 (590)
++|....+-.-|..|.-|++... ..+.++..|-.+
T Consensus 387 ~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp 431 (638)
T 3sbq_A 387 GRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP 431 (638)
T ss_dssp SSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred CCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC
Confidence 99965566678999999998653 567777776553
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.00 E-value=0.47 Score=48.81 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=92.4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC---CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc------
Q 007768 439 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH---MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK------ 509 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~---~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~------ 509 (590)
.++..++.+- ++.||.-++......+.+..+. ...+..+..+|+|.+||..+ +..|.|..+..+.....
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 3455555544 4678877776444444554442 33688899999999999975 56788888863221110
Q ss_pred -c--ccccC----cccccceEEEEEcCC---CCEEEEEcCCCcEEEEeCCCC--eEEEEEe---------cCCCcEEEEE
Q 007768 510 -K--KRFAG----HIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDWKSC--KVFRTLK---------CHEGVCIGCE 568 (590)
Q Consensus 510 -~--~~~~~----~~~~~~v~~v~~spd---g~~l~sgs~dg~I~iwd~~t~--~~~~~l~---------~h~~~V~~v~ 568 (590)
. +.+.- ......|..+.|+|- +..|++-..|+.|++||+... ++. .++ .....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 0 01110 112466889999994 568999999999999999752 222 332 1235688999
Q ss_pred EcCCCCCEEEEEe--CCCcEE
Q 007768 569 WHPLEQSKVATCG--WDGLIK 587 (590)
Q Consensus 569 ~sp~~~~~l~s~g--~Dg~I~ 587 (590)
|.+ ++-.|.... ..|.|+
T Consensus 187 Fg~-~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 187 FSK-DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp ECT-TSSCEEEEECTTSCEEE
T ss_pred EcC-CCcEEEEEecCCCCCEE
Confidence 998 665566544 677775
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.95 E-value=0.28 Score=49.27 Aligned_cols=234 Identities=11% Similarity=0.114 Sum_probs=111.3
Q ss_pred CCEEEEEeCC-CcEEEEecCCCCeeEEEeccCC--CCe-EEEEEccCCCEEEEEec-C---------CeEEEEECCCCcE
Q 007768 312 GHLILSAGMD-TKVKIWDVVNSGKCMRTYMGHS--KAV-RDISFCNDGTKFLTASY-D---------KNIKYWDTETGQV 377 (590)
Q Consensus 312 g~~L~sgs~D-g~I~iWd~~~~~~~~~~~~~h~--~~V-~~l~fspdg~~l~s~s~-D---------g~I~vWd~~t~~~ 377 (590)
+.+++.|+.+ ..+.++|+......-..+..-. ... .+++. -++.+++.|+. + ..+.+||+.+.+-
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 5666666643 4688888732112222222111 111 12222 25677777776 2 4688999988765
Q ss_pred EEEecCC---CcceEEEEecCCCCCcEEEEEECC---------------------------------------CeEEEEe
Q 007768 378 IRTFSTG---KIPYVVKLNPDDDKQNILLAGMSD---------------------------------------KKIVQWD 415 (590)
Q Consensus 378 ~~~~~~~---~~~~~~~~~~~~~~~~~lvsg~~d---------------------------------------g~I~iwD 415 (590)
...-... .....+.. . ++.+++.|+.+ ..+.+||
T Consensus 99 ~~~~~~~p~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV-H---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EECSCCCSSCCSSEEEEE-E---TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred EECCCCCCcccccceEEE-E---CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 5433222 11222222 2 23677888754 5799999
Q ss_pred CCCCceEEEEcCcC-Cce-eEEEEeCCCCEEEEEeC------CCcEEEEEC--CCCcEEEEeec-CCCC-ceeEEEEcCC
Q 007768 416 MNTKEITQEYDQHL-GAV-NTITFVDSNRRFVTSSD------DKSLRVWEF--GIPVVIKYISE-PHMH-SMPSISLHPN 483 (590)
Q Consensus 416 ~~t~~~~~~~~~h~-~~V-~~i~~~p~~~~l~s~s~------Dg~I~iwdl--~~~~~~~~~~~-~~~~-~i~~i~~sp~ 483 (590)
+.+.+-...-.... ... .+++.. +++.++.|+. ...+.+||+ .+.. ...+.. +... .....+...+
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~ 252 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGFAGISN 252 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCEEEEET
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccceEEEEC
Confidence 98875332211111 111 333333 5566666653 345777887 3332 222221 1111 1111122235
Q ss_pred CCEEEEEEcC----------------------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007768 484 TNWLAAQSLD----------------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 484 g~~la~~s~d----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
+.+++.|+.+ ..+.+||+.+.. ......+.... .... ++.-++++++.|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~--~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGR--AYGV--SLPWNNSLLIIGGETA 327 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCC--BSSE--EEEETTEEEEEEEECG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCc--ccce--eEEeCCEEEEEeeeCC
Confidence 6677776632 257788886532 11111111111 1111 1223677888887543
Q ss_pred ------cEEEEeCCCCeEEEEE
Q 007768 542 ------KCWFWDWKSCKVFRTL 557 (590)
Q Consensus 542 ------~I~iwd~~t~~~~~~l 557 (590)
.|.++++++++.+...
T Consensus 328 ~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp GGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCCEeeeEEEEEEcCcEeEeee
Confidence 3666788877765543
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.87 E-value=1.5 Score=43.07 Aligned_cols=208 Identities=6% Similarity=0.026 Sum_probs=113.4
Q ss_pred CCEEEEEe-C-CCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecC--------------CeEEEEECCCC
Q 007768 312 GHLILSAG-M-DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD--------------KNIKYWDTETG 375 (590)
Q Consensus 312 g~~L~sgs-~-Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D--------------g~I~vWd~~t~ 375 (590)
+..|+-.. . ++.|...+. ++.....+... .+--++++|.+|+-+... ..|+..++..+
T Consensus 25 g~~iy~~n~~d~~~ly~~~~--dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 25 DGEVFFSNTNDNGRLYAMNI--DGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp TTEEEEEEGGGTTEEEEEET--TSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred CCEEEEEeCCCCceEEEEcC--CCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 44554443 2 344444444 45444444322 234567889888877653 46788888776
Q ss_pred cEEEEecCCCcceEEEEecCCCCCcEEEEE---ECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CC
Q 007768 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAG---MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK 451 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg---~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg 451 (590)
+....... . ...+.+.+. .++.+- .....|+..++...... .+..+.. ..++++++.|+-++. ..
T Consensus 99 ~~~~l~~~--~--~~~~s~~g~--~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 99 GSTVLDPD--P--CIYASLIGN--YIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCEEEECS--C--EEEEEEETT--EEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTC
T ss_pred cceEeecC--C--ccEEEEeCC--EEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 54332221 1 224444332 344443 24556777777654433 3333322 345677888887765 57
Q ss_pred cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC--eEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007768 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
.|++.++...... .+.. . .. ...++|++.+|+-....+ .|..-++....... +.. ..+ ..|+|
T Consensus 168 ~Iy~~~l~g~~~~-~l~~-~--~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~----Lt~----~~~--~~~~~ 232 (302)
T 3s25_A 168 QLYRYDTASQSEA-LFYD-C--NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV----LTE----ANI--EHYNV 232 (302)
T ss_dssp CEEEEETTTTEEE-EEEC-S--CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE----CSC----SCE--EEEEE
T ss_pred eEEEEECCCCCEE-EEeC-C--Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE----EeC----CCc--ceEEE
Confidence 8888888765543 3322 1 12 234669999888876543 56666665543221 111 111 34788
Q ss_pred CCCEEEEEc--CCCcEEEEeCCCC
Q 007768 530 DGRFVMSGD--GEGKCWFWDWKSC 551 (590)
Q Consensus 530 dg~~l~sgs--~dg~I~iwd~~t~ 551 (590)
++.+|+-++ ..+.|..-++.-.
T Consensus 233 ~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 233 YGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCEEEEEECCCCcEEEEEECCCC
Confidence 888887653 2456777776543
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.78 E-value=0.8 Score=47.99 Aligned_cols=109 Identities=10% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE--EeecC-----CCCceeEEEEcCC---CCEEEEEEc------
Q 007768 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK--YISEP-----HMHSMPSISLHPN---TNWLAAQSL------ 492 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~--~~~~~-----~~~~i~~i~~sp~---g~~la~~s~------ 492 (590)
......|+|.|+|+++++-...+.|++++...+.... .+... ....+..|+|+|+ +.+|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4456799999999877766554578888765443322 22111 2345679999995 555555443
Q ss_pred -------CCeEEEEEcCCc--e--eec-ccccccCcccccceEEEEEcCCCCEEEEEc
Q 007768 493 -------DNQILIYSTRER--F--QLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 493 -------dg~I~iwd~~~~--~--~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
...|.-|+.... . ... .+..+... .......|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence 235666665321 0 000 11111111 123456899999998777644
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.47 E-value=0.59 Score=46.01 Aligned_cols=144 Identities=10% Similarity=0.074 Sum_probs=74.5
Q ss_pred CCCEEEEEecC-------CeEEEEECCCCcEEEEecCCCc--ceEEEEecCCCCCcEEEEEEC------CCeEEEEeCCC
Q 007768 354 DGTKFLTASYD-------KNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNT 418 (590)
Q Consensus 354 dg~~l~s~s~D-------g~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~t 418 (590)
++..++.|+.+ ..+.+||+.+.+-...-..... ...+.. . ++.+++.|+. -..+.+||+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H---NGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E---TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E---CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 56777777764 3588889988765543222211 122222 2 2356677654 24689999988
Q ss_pred CceEEEEcCcCC-ceeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc
Q 007768 419 KEITQEYDQHLG-AVNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 419 ~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~ 492 (590)
.+-...-..... .-.+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~ 262 (318)
T 2woz_A 185 GDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL-AGSLYAIGGF 262 (318)
T ss_dssp TEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred CEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE-CCEEEEECCe
Confidence 753332111111 11223333 56677777643 3577889877654332211111111222222 4566666654
Q ss_pred C--------------CeEEEEEcCC
Q 007768 493 D--------------NQILIYSTRE 503 (590)
Q Consensus 493 d--------------g~I~iwd~~~ 503 (590)
+ ..|.+||+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 263 AMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CCBC----CCBCCBCCCEEEEETTT
T ss_pred eccCCCCceeccceeeeEEEEeCCC
Confidence 3 3467777765
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.40 E-value=1.4 Score=41.06 Aligned_cols=177 Identities=9% Similarity=-0.076 Sum_probs=93.4
Q ss_pred cEEEEEECCCeEEEEeCCCCc------eEEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc------EEEE
Q 007768 400 NILLAGMSDKKIVQWDMNTKE------ITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV------VIKY 466 (590)
Q Consensus 400 ~~lvsg~~dg~I~iwD~~t~~------~~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~------~~~~ 466 (590)
.+|++...| +|+.=-+..+. ....+-. --..+..++|+|++.+.++ .+|.|+-.+..+.. .-..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 456666666 66665554443 1122211 1347889999998886666 66766555543311 1122
Q ss_pred eecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc--cccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007768 467 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK--RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 544 (590)
Q Consensus 467 ~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~ 544 (590)
+-...-....++.|.|+|.+.++ .||.|+-++-.+.....-+. ..-+...-..+..|.|.|+|.+.++. +|.++
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 22112222578999999988887 56988877653211110000 00000011346789999999877776 77765
Q ss_pred EEeCCCCe------EEEEEe-cCCCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 545 FWDWKSCK------VFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 545 iwd~~t~~------~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
-+...+.. ....+- ..-..-.-+.|.+ ++.+.+.. +|.|
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~-~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS-VGTLFGVQ--GGKF 203 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT-TSCEEEEE--TTEE
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECC-CCcEEEEe--CCeE
Confidence 44333211 111111 2222344566887 55444433 6654
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.29 E-value=0.9 Score=50.42 Aligned_cols=198 Identities=9% Similarity=0.068 Sum_probs=106.0
Q ss_pred cCCCEEEEEecC----CeEEEEECCCCcEEEEe-c-------CCCcceEEEEecCCCCCcEEEEEECC------CeEEEE
Q 007768 353 NDGTKFLTASYD----KNIKYWDTETGQVIRTF-S-------TGKIPYVVKLNPDDDKQNILLAGMSD------KKIVQW 414 (590)
Q Consensus 353 pdg~~l~s~s~D----g~I~vWd~~t~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~lvsg~~d------g~I~iw 414 (590)
.++..++.|+.+ ..+.+||..+++....- . .......+..... ++.+++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEEE
Confidence 456777777753 46888998887654433 2 1122223333321 22577777653 358889
Q ss_pred eCCCCceEEEEcCcCC-ceeEEEEeCCCCEEEEEeCCC--cEEEEECCCCcEEEEee---cC-CCCceeEEEEcCC-CCE
Q 007768 415 DMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSDDK--SLRVWEFGIPVVIKYIS---EP-HMHSMPSISLHPN-TNW 486 (590)
Q Consensus 415 D~~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~Dg--~I~iwdl~~~~~~~~~~---~~-~~~~i~~i~~sp~-g~~ 486 (590)
|+.+.+-...-..... .-.+++...++..++.|+.++ .+.+||..+..-..... .+ ......++.+..+ +.+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 9988643222111111 122333334788888887654 68999988765433221 11 1222233555655 667
Q ss_pred EEEEEcC-------CeEEEEEcCCcee-----ecccccccCcccccceEEEEEcCCCCEEEEEcC--------CCcEEEE
Q 007768 487 LAAQSLD-------NQILIYSTRERFQ-----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--------EGKCWFW 546 (590)
Q Consensus 487 la~~s~d-------g~I~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~--------dg~I~iw 546 (590)
++.|+.+ +.+.+||+.+..- .......... ...-..++...++++++.|+. ...|.+|
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~--~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF--QRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG--CCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC--CcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 7777652 4688999876541 1111110000 111112333333777777773 3469999
Q ss_pred eCCCCeEE
Q 007768 547 DWKSCKVF 554 (590)
Q Consensus 547 d~~t~~~~ 554 (590)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99876543
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.97 E-value=1.3 Score=44.59 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=84.7
Q ss_pred EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE--ee---cCCCCceeEEEEcCC---CCEEEEE-E--c
Q 007768 424 EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY--IS---EPHMHSMPSISLHPN---TNWLAAQ-S--L 492 (590)
Q Consensus 424 ~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~--~~---~~~~~~i~~i~~sp~---g~~la~~-s--~ 492 (590)
.+.........|+|.|++++|++--..|.|++++......... +. .........|+++|+ ..+|++. + .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3434456678999999998777766689999998655443221 11 123456789999995 4455443 2 3
Q ss_pred CCeEEEEEcCCce----eecc----cccccCcccccceEEEEEcCCCCEEEEEcC-------------CCcEEEEeCCCC
Q 007768 493 DNQILIYSTRERF----QLNK----KKRFAGHIVAGYACQVNFSPDGRFVMSGDG-------------EGKCWFWDWKSC 551 (590)
Q Consensus 493 dg~I~iwd~~~~~----~~~~----~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-------------dg~I~iwd~~t~ 551 (590)
++.|.-|.+.... .+.. +..+.. ........|.|.|||.+.++.+. .|.|.-++....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 4567667665411 1100 111111 01122346999999987776432 355555554322
Q ss_pred ----e---EEEEE-ecCCCcEEEEEEcCCCCCEEE
Q 007768 552 ----K---VFRTL-KCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 552 ----~---~~~~l-~~h~~~V~~v~~sp~~~~~l~ 578 (590)
. ....+ .+|.. ...++|+| ++.+.+
T Consensus 185 ip~~nPf~~~~i~a~G~RN-p~Gla~dp-~G~L~~ 217 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRN-VQGLAWDD-KQRLFA 217 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSB-CCEEEECT-TCCEEE
T ss_pred ccCCCCCCCCeEEeeCCCC-cceEEECC-CCCEEE
Confidence 0 01122 24443 57899999 555444
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.61 E-value=2.1 Score=39.86 Aligned_cols=142 Identities=9% Similarity=0.046 Sum_probs=77.6
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEE------EEecCCC--cceEEEEecCCCCCcEEEEEECCCeEEEEe
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI------RTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~------~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD 415 (590)
..+.+++|+|+|.+.++ .+|.+.-.+..+.... ..+-... .-..+.+.+++ . |.++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G---~-LYav-~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG---Y-LYAV-SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS---C-EEEE-ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC---C-EEEe-CCCEEEEeC
Confidence 47889999999986666 6787666665442211 1111101 11234444433 3 4444 679999888
Q ss_pred CCCCce-------EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc------EEEEeecCCCCceeEEEEcC
Q 007768 416 MNTKEI-------TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV------VIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 416 ~~t~~~-------~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~------~~~~~~~~~~~~i~~i~~sp 482 (590)
-.+... ...-..--..+..|.+.|+|.+.++. |+.++-+...... ....+....-+..+-+.|.+
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 643211 11111122467899999999877777 7765433221111 11122222333455577888
Q ss_pred CCCEEEEEEcCCeE
Q 007768 483 NTNWLAAQSLDNQI 496 (590)
Q Consensus 483 ~g~~la~~s~dg~I 496 (590)
++.++++. ++.|
T Consensus 192 ~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 192 VGTLFGVQ--GGKF 203 (236)
T ss_dssp TSCEEEEE--TTEE
T ss_pred CCcEEEEe--CCeE
Confidence 88877776 6643
No 343
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.19 E-value=5.1 Score=40.09 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=123.3
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE--Eec-----CCCcceEEEEecCCCCCcEEEEE---EC
Q 007768 338 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFS-----TGKIPYVVKLNPDDDKQNILLAG---MS 407 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~lvsg---~~ 407 (590)
.+...-..-+.|+|.|+|++|++--..|.|++++..+++... .+. ......-+++.|+-.....|++. ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 333344567899999999877666558999999876665422 221 12234567777642111233332 24
Q ss_pred CCeEEEEeCCCC----------ceE-EEEcC-cCCceeEEEEeCCCCEEEEEeC-------------CCcEEEEECCCCc
Q 007768 408 DKKIVQWDMNTK----------EIT-QEYDQ-HLGAVNTITFVDSNRRFVTSSD-------------DKSLRVWEFGIPV 462 (590)
Q Consensus 408 dg~I~iwD~~t~----------~~~-~~~~~-h~~~V~~i~~~p~~~~l~s~s~-------------Dg~I~iwdl~~~~ 462 (590)
++.|.-|.+..+ +.+ ..+.. .......|.|.|+|.++++.++ .|.|.-.+.....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 556776766541 111 12221 1123467999999988777653 2444444443210
Q ss_pred -------EEEEeecCCCCceeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceee---------------cccccccCcccc
Q 007768 463 -------VIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL---------------NKKKRFAGHIVA 519 (590)
Q Consensus 463 -------~~~~~~~~~~~~i~~i~~sp~g~~la~~s-~dg~I~iwd~~~~~~~---------------~~~~~~~~~~~~ 519 (590)
....+...+ .....++|+|++.++++-. .++.-.|.-+..+... .....+..+ .
T Consensus 186 p~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~ 262 (347)
T 3das_A 186 APGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD--E 262 (347)
T ss_dssp CTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT--T
T ss_pred cCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC--C
Confidence 011122223 3466899999877655532 2222222222221110 000001000 0
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE----EEEEecCCCcEEEEEEcCCCCCEEEEEe
Q 007768 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV----FRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~----~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
...+.++|. +|.+++..-..+.|....+..... ...+....+.+.+|+..| ++.++++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 123456665 466666666667777777655432 222333346799999999 555555543
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.18 E-value=1.8 Score=51.25 Aligned_cols=195 Identities=13% Similarity=0.201 Sum_probs=112.2
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC-cEEEEecCCC
Q 007768 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFSTGK 385 (590)
Q Consensus 307 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~~~~~~~~~~ 385 (590)
.+|. .+.|+.-. ..++.|+|+ .....+..+.- ...|.-=.|-... .|+..+ +..|.-|++... .+++.|..+.
T Consensus 73 MnP~-~~iiALra-g~~lQiFnl-~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred cCCC-cceEEEec-CCeEEEeeh-HHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 4666 45555443 678999999 45555555443 3456666665443 444443 468999999742 3333332221
Q ss_pred ---cceEEEEecCCCCCcEEEEEE------CCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC--C-CCEEEEEe---CC
Q 007768 386 ---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD--S-NRRFVTSS---DD 450 (590)
Q Consensus 386 ---~~~~~~~~~~~~~~~~lvsg~------~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p--~-~~~l~s~s---~D 450 (590)
...++....+.+..-++++|- -.|.+.+|....+ ..+.+.+|.+....+.... . ...|..+. ..
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 233455555554444455543 3588889988754 3455666766554444431 1 12232222 13
Q ss_pred CcEEEEECCCC-----cE---EEEeecC---CCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007768 451 KSLRVWEFGIP-----VV---IKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 451 g~I~iwdl~~~-----~~---~~~~~~~---~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~ 508 (590)
+.++|.++..+ .. ...+..+ ...-..++..++....+...+.-|.|.+||+.++..+.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 68899888543 10 1111111 12335567888888889999999999999999886653
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.17 E-value=6.3 Score=41.05 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=60.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE--EecC-------CCcceEEEEecCCCCCcEEEEEEC------
Q 007768 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFST-------GKIPYVVKLNPDDDKQNILLAGMS------ 407 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~lvsg~~------ 407 (590)
-...+.|+|.|+|+++++-...+.|++++..++.... .+.. .....-+++.|+-.....|++...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999876665444579888876565432 2221 122335777775322234444432
Q ss_pred -------CCeEEEEeCCCC-------ceEE-EEcC-cCCceeEEEEeCCCCEEEEEeC
Q 007768 408 -------DKKIVQWDMNTK-------EITQ-EYDQ-HLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 408 -------dg~I~iwD~~t~-------~~~~-~~~~-h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
...|.-|++... +.+. .+.. .......|.|.|+|.++++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665332 1111 1221 1224688999999988887654
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.07 E-value=1.8 Score=47.94 Aligned_cols=150 Identities=15% Similarity=0.258 Sum_probs=83.2
Q ss_pred cEEEEEECC----CeEEEEeCCCCceEEEE-c------CcCCceeEEEEeC-CCCEEEEEeCC------CcEEEEECCCC
Q 007768 400 NILLAGMSD----KKIVQWDMNTKEITQEY-D------QHLGAVNTITFVD-SNRRFVTSSDD------KSLRVWEFGIP 461 (590)
Q Consensus 400 ~~lvsg~~d----g~I~iwD~~t~~~~~~~-~------~h~~~V~~i~~~p-~~~~l~s~s~D------g~I~iwdl~~~ 461 (590)
.+++.|+.+ ..+.+||+.+++-...- . .....-.+++..+ ++..++.|+.+ ..+.+||..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 567777643 46889999887543332 1 1111223444444 67777777643 35788998776
Q ss_pred cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCC--eEEEEEcCCceeeccccc---ccCcccccceEEEEEcCC-CCEEE
Q 007768 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKR---FAGHIVAGYACQVNFSPD-GRFVM 535 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg--~I~iwd~~~~~~~~~~~~---~~~~~~~~~v~~v~~spd-g~~l~ 535 (590)
.-...-..+....-.+++...++.+++.|+.++ .+.+||..+.. ...... .... ......+.+..+ +++++
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~--r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEFFQN--SLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGGGGS--CCBSCEEEEETTTTEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCCCCc--ccceeEEEEeCCCCEEEE
Confidence 433322112222223444434788888887654 68999987643 111111 1111 111223555555 66777
Q ss_pred EEcC--C-----CcEEEEeCCCCe
Q 007768 536 SGDG--E-----GKCWFWDWKSCK 552 (590)
Q Consensus 536 sgs~--d-----g~I~iwd~~t~~ 552 (590)
.|+. + ..+.+||+.+..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ECCcCCCCCeeeCcEEEEEccCCc
Confidence 7765 2 458999988766
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.18 E-value=8 Score=39.06 Aligned_cols=263 Identities=11% Similarity=0.039 Sum_probs=121.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCC----cEEEEecCCCCeeEEEecc--------------CCCCeEEEEEcc-C-CCEE
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDT----KVKIWDVVNSGKCMRTYMG--------------HSKAVRDISFCN-D-GTKF 358 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg----~I~iWd~~~~~~~~~~~~~--------------h~~~V~~l~fsp-d-g~~l 358 (590)
...|.+|++.|.+...|..++..| .|.. ....+.....+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~--s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFR--SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEE--ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEE--eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 356999999983334444454444 3333 3233332222211 112578899987 2 4566
Q ss_pred EEEecCCeEEEEECCCCcEEEEecC--------------------CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC
Q 007768 359 LTASYDKNIKYWDTETGQVIRTFST--------------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t 418 (590)
+.++..+.|...+ ..++.-..+.. ......+.+.+.. ...++++...+.|...+- .
T Consensus 132 ~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~--~~~l~vg~~~ggl~~s~D-g 207 (394)
T 3b7f_A 132 YAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRD--PKHLYIGMSSGGVFESTD-A 207 (394)
T ss_dssp EEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTC--TTCEEEEEETBEEEEESS-T
T ss_pred EEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCC--CCEEEEEECCCCEEEECC-C
Confidence 6666666554442 22322222211 0112344444422 233555555555554432 2
Q ss_pred CceEEEEcC-----c--------CCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecC-CC---CceeEEEE
Q 007768 419 KEITQEYDQ-----H--------LGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEP-HM---HSMPSISL 480 (590)
Q Consensus 419 ~~~~~~~~~-----h--------~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~-~~---~~i~~i~~ 480 (590)
++....+.. + ...+.+|.+.|. ...|+++...+ |...+ ..+.....+... .. ..+.++.+
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEE
Confidence 222222211 0 124788999886 35666666544 54443 223333333221 11 23567888
Q ss_pred cCC-CCEEEEEEc-----------CCeEEEEEcCC-ceeecccc-cccCcc--cccceEEEEEcCC-CCEEEEEcCCCcE
Q 007768 481 HPN-TNWLAAQSL-----------DNQILIYSTRE-RFQLNKKK-RFAGHI--VAGYACQVNFSPD-GRFVMSGDGEGKC 543 (590)
Q Consensus 481 sp~-g~~la~~s~-----------dg~I~iwd~~~-~~~~~~~~-~~~~~~--~~~~v~~v~~spd-g~~l~sgs~dg~I 543 (590)
+|. ...|+++.. ++...+|...+ +....... .+.... .......++++|. ...|+.++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 763 344544432 23345554443 22221111 111100 0011134778874 3456677666666
Q ss_pred EEEeCCCCeEEEEEecCCCcEEEEEEc
Q 007768 544 WFWDWKSCKVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 544 ~iwd~~t~~~~~~l~~h~~~V~~v~~s 570 (590)
+.-. ..++....+..+-..+.+++|.
T Consensus 366 ~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 5432 4455555555555567788774
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.17 E-value=3.5 Score=39.95 Aligned_cols=218 Identities=11% Similarity=0.010 Sum_probs=105.4
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEE-EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceE
Q 007768 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~ 422 (590)
..|..|+.... +.+.-. ||.|..|-....-.+. .......+..+..-. .+.++. . ||.|+.|-....-.+
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~----~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN----YHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS----SEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC----CEEEEE-E-CCEEEEeeCCCCCCC
Confidence 35777776543 223234 8999999765321111 011111222233222 133444 4 899999976542111
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007768 423 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~ 502 (590)
..-..-...|..|+.... ..+.-. +|.|+.|-......+. +.......|..++.-.. +.++-. +|.|+.|-..
T Consensus 95 g~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 95 TVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDN 167 (282)
T ss_dssp CCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECC
T ss_pred CCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCC
Confidence 111111246777777643 333334 8999999765422111 11112334666555432 333334 7999999765
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEecCCCcEEEEEEcCCCCCEEEEEeC
Q 007768 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
....+..... ....+..++...... ++. .+|.|+.|-....-.+..-......|..++... .. .++. .
T Consensus 168 ~~gqlg~p~~-----~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~-~h-~~al-~- 235 (282)
T 3qhy_B 168 YFGQTTVPAE-----AQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGE-WY-SLAL-K- 235 (282)
T ss_dssp TTSTTSCCGG-----GGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECS-SC-EEEE-E-
T ss_pred CCCCCCCcee-----cCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCC-CE-EEEE-E-
Confidence 4333221111 123455565544332 233 589999997643211110001112466666543 22 2333 3
Q ss_pred CCcEEEc
Q 007768 583 DGLIKYW 589 (590)
Q Consensus 583 Dg~I~iW 589 (590)
||.|..|
T Consensus 236 ~g~v~~w 242 (282)
T 3qhy_B 236 NGKVIAW 242 (282)
T ss_dssp TTEEEEE
T ss_pred CCEEEEe
Confidence 8888887
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.04 E-value=14 Score=37.18 Aligned_cols=270 Identities=11% Similarity=-0.003 Sum_probs=120.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEEEe--ccCCCCeEEEEEcc-CCCEEEEEecCC----eEEEEECCCCcEEEEecCC
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCN-DGTKFLTASYDK----NIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fsp-dg~~l~s~s~Dg----~I~vWd~~t~~~~~~~~~~ 384 (590)
...|+.|+..| +.+++....+.....+ ......|.+|++.| +...|+.++..| .|... ...++.-..+...
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 45677788777 4444432222222221 12345699999998 334455555444 34332 2333322222111
Q ss_pred -------------CcceEEEEecCCCC-CcEEEEEECCCeEEEEeCCCCceEEEEcC-------------------cCCc
Q 007768 385 -------------KIPYVVKLNPDDDK-QNILLAGMSDKKIVQWDMNTKEITQEYDQ-------------------HLGA 431 (590)
Q Consensus 385 -------------~~~~~~~~~~~~~~-~~~lvsg~~dg~I~iwD~~t~~~~~~~~~-------------------h~~~ 431 (590)
....+..+..++.+ ...++++...+.|...+-. ++....+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCc
Confidence 00123233333211 2346666666666655322 222222211 1235
Q ss_pred eeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCC------------CCceeEEEEcCC-CCEEEEEEcCCeEE
Q 007768 432 VNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPH------------MHSMPSISLHPN-TNWLAAQSLDNQIL 497 (590)
Q Consensus 432 V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~------------~~~i~~i~~sp~-g~~la~~s~dg~I~ 497 (590)
+.+|.+.|. ...|+.+..++.|...+ ..+.....+.... ...+.+|.++|. ...|+++...+ |.
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~ 256 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY 256 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence 788999873 34444454444444332 2222222222110 134788999986 45666666444 54
Q ss_pred EEEcCCceeeccccc-ccCcccccceEEEEEcC-CCCEEEEEcC-----------CCcEEEEeCCC-CeEEEEEec-CCC
Q 007768 498 IYSTRERFQLNKKKR-FAGHIVAGYACQVNFSP-DGRFVMSGDG-----------EGKCWFWDWKS-CKVFRTLKC-HEG 562 (590)
Q Consensus 498 iwd~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp-dg~~l~sgs~-----------dg~I~iwd~~t-~~~~~~l~~-h~~ 562 (590)
..+-. +........ +... ....+..+.++| +...|+++.. ++...||.... |+....+.. -..
T Consensus 257 ~s~D~-G~tW~~~~~~l~~~-~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~ 334 (394)
T 3b7f_A 257 RMDRR-EGVWKRIGDAMPRE-VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT 334 (394)
T ss_dssp EEETT-TTEEECGGGGSCTT-TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred EeCCC-CCcceECCCCCCCC-CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence 44322 222221111 1110 012345678876 3334444421 23344554433 333333321 110
Q ss_pred -------cEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007768 563 -------VCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 563 -------~V~~v~~sp~~~~~l~s~g~Dg~I~i 588 (590)
....++++|.+...|+.++.++.|..
T Consensus 335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred ccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 11357888855555666666665543
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.59 E-value=13 Score=35.78 Aligned_cols=238 Identities=13% Similarity=0.059 Sum_probs=116.9
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC-cEEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIR 379 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~~~~ 379 (590)
.|..|+.-.. +.++. . ||.|..|-....+++-.. ......|..|+...... ++. . ||.|..|-.... ++-.
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC
Confidence 4677766533 44444 5 899999976433332111 11233577777654433 333 4 899999976532 2110
Q ss_pred EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007768 380 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
.......+..+..-. ...++-. +|.|+.|-....-.+..-......|..|+..... .+.-. ||.|+.|-..
T Consensus 97 P~~~~~~v~~ia~G~-----~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 97 PAEARSGVDAIAAGA-----WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDN 167 (282)
T ss_dssp CGGGSSSEEEEEEET-----TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECC
T ss_pred CcccCCCeEEEECcC-----CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCC
Confidence 111111222222222 2233344 9999999765422111111123456666654332 22233 7999999765
Q ss_pred CCcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC
Q 007768 460 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 460 ~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
....+. +.......|..|+.-.. +.++- .+|.|+.|-......+..... ....|..++......++++
T Consensus 168 ~~gqlg-~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~-----~~~~v~~i~~G~~h~~al~--- 235 (282)
T 3qhy_B 168 YFGQTT-VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTE-----ALSGVSAIASGEWYSLALK--- 235 (282)
T ss_dssp TTSTTS-CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGG-----GGSSCCEEEECSSCEEEEE---
T ss_pred CCCCCC-CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcc-----cCCCceEEEcCCCEEEEEE---
Confidence 422111 11112234666655433 33333 599999997654332211110 1123445555444333333
Q ss_pred CCcEEEEeCCCCeEEEEEecCCCcEEEEEEcC
Q 007768 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+|.|+.|-.....++.. ...|.+++-..
T Consensus 236 ~g~v~~wG~n~~gq~~v----~~~v~~iaaG~ 263 (282)
T 3qhy_B 236 NGKVIAWGSSRTAPSSV----QSGVSSIEAGP 263 (282)
T ss_dssp TTEEEEESTTCCCCGGG----SSCEEEEEECS
T ss_pred CCEEEEecCCCCccccC----CCCcEEEEECc
Confidence 89999997655333221 23466666654
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.41 E-value=0.91 Score=48.18 Aligned_cols=94 Identities=9% Similarity=-0.014 Sum_probs=62.5
Q ss_pred eEEEEeCCC----CceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCC-----------cEEEEeecCCCC
Q 007768 410 KIVQWDMNT----KEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIP-----------VVIKYISEPHMH 473 (590)
Q Consensus 410 ~I~iwD~~t----~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~-----------~~~~~~~~~~~~ 473 (590)
.|.+.|.+. +..+..+-.-......+.++|+|+++++++ .+.++.++|+... .....-.....-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 477888876 333333323445567789999999988766 4778999998631 111111112344
Q ss_pred ceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
.....+|.++|....+...|.+|..|++..
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccH
Confidence 567789999996556666899999999865
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.93 E-value=36 Score=33.02 Aligned_cols=139 Identities=7% Similarity=0.025 Sum_probs=78.4
Q ss_pred EEEccCCCEEEEEe----cCCeEEEEECCCCcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEE
Q 007768 349 ISFCNDGTKFLTAS----YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 424 (590)
Q Consensus 349 l~fspdg~~l~s~s----~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~ 424 (590)
..|++++.+|+-+. ....|...++........... .. ..+.+.+ ..++.+......|+..++..+.....
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~-~~---~~~~~~g--~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-YL---FTCNTSD--RYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS-CC---CCSEEET--TEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC-Cc---eEeeEEC--CEEEEEeCCCceEEEEECCCCCEEEE
Confidence 36788888888765 345566667764443332222 21 2234433 34555555567899989877654443
Q ss_pred EcCcCCceeEEEEeCCCCEEEEEeCCC--cEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc--CCeEEEEE
Q 007768 425 YDQHLGAVNTITFVDSNRRFVTSSDDK--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYS 500 (590)
Q Consensus 425 ~~~h~~~V~~i~~~p~~~~l~s~s~Dg--~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~--dg~I~iwd 500 (590)
+.+ ... +.++|++.+|+-....+ .|..-++..... ..+. ...+ ..|+|++.+|+.++. .+.|...+
T Consensus 183 ~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~ 252 (302)
T 3s25_A 183 YDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT---EANI--EHYNVYGSLIFYQRGGDNPALCVVK 252 (302)
T ss_dssp ECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS---CSCE--EEEEEETTEEEEEECSSSCEEEEEE
T ss_pred eCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe---CCCc--ceEEECCCEEEEEECCCCcEEEEEE
Confidence 332 222 34668888887766443 565666654442 2222 1223 347888888876543 35666666
Q ss_pred cCC
Q 007768 501 TRE 503 (590)
Q Consensus 501 ~~~ 503 (590)
+..
T Consensus 253 ~DG 255 (302)
T 3s25_A 253 NDG 255 (302)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=82.72 E-value=39 Score=33.27 Aligned_cols=272 Identities=8% Similarity=-0.008 Sum_probs=134.3
Q ss_pred CCEEEEEeCCCcEEEEecCC------CCeeEEEec-cCCCCeEEEEEccCCCEEEEEecCCeEEEEE---CCC------C
Q 007768 312 GHLILSAGMDTKVKIWDVVN------SGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWD---TET------G 375 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~------~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd---~~t------~ 375 (590)
..++++.+.+|.|+--.+.. .++-+..+. .....+..+........|+.-+..|.+.... +.. |
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 35677888888888655310 001111111 1233455555555555666666677655443 322 2
Q ss_pred cEEEE---ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCc-------eEEEEcCcCCceeEEEEeCCCCEEE
Q 007768 376 QVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-------ITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 376 ~~~~~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~-------~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
..+.. +..+..+..+.....-....+++..+.+|.|+...+.... ....+.. ...+..+........++
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 22211 1122222222222221234689999999999988765321 1122322 34565666666667888
Q ss_pred EEeCCCcEEEEECC--CC-------cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc----ccc
Q 007768 446 TSSDDKSLRVWEFG--IP-------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----KKR 512 (590)
Q Consensus 446 s~s~Dg~I~iwdl~--~~-------~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~----~~~ 512 (590)
..+..|.+..+... .- .-+..+.......|.++...+.+.+|+..+..|.++.-.+..-....+ ...
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 88889998888776 21 111112223345577776666677899999999999887654221111 011
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeE-------EEEEec-CCCcEEEEEEcCCCCCEEEEEeCCC
Q 007768 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-------FRTLKC-HEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~-------~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~Dg 584 (590)
+.-......+..+....+...|+..+.+|.+.-++...-.. +..+.. ....|.++...+.+...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 11000012333344444455666677788877776543221 111111 2346777777664445566666655
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.60 E-value=43 Score=33.73 Aligned_cols=188 Identities=6% Similarity=-0.035 Sum_probs=100.6
Q ss_pred CeEEEEECCCC--cEEEEecCCCc-------ceEEEEe-cC----CCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCC
Q 007768 365 KNIKYWDTETG--QVIRTFSTGKI-------PYVVKLN-PD----DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG 430 (590)
Q Consensus 365 g~I~vWd~~t~--~~~~~~~~~~~-------~~~~~~~-~~----~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~ 430 (590)
-.|.+||+.++ +.++++..... ...+.+. .. ..+....++=...+.|.++|+.+++..+.+..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 36889999999 99988765422 2234444 11 112233444445789999999999877666322
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCceeEEEEcCC----CCEEEEEEcCCeEEEEEcCCc--
Q 007768 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN----TNWLAAQSLDNQILIYSTRER-- 504 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~----g~~la~~s~dg~I~iwd~~~~-- 504 (590)
|.|+....++. +|.-.- -...+..|+++|+ +++|..+...+. ++|.+.+.
T Consensus 201 ------~~pd~~~~~~i--~G~~~~---------------~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L 256 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEYE---------------FKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKEL 256 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEEE---------------ECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHH
T ss_pred ------CccccCcceEE--CCEEeE---------------eccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHh
Confidence 23331111111 121111 1246888999997 778887776652 34443321
Q ss_pred ---eeecccccccCccc-ccceEEEEEc-CCCCEEEEEcCCCcEEEEeCCC-C---eEEEEEecCC--CcEEEEEEcCCC
Q 007768 505 ---FQLNKKKRFAGHIV-AGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKS-C---KVFRTLKCHE--GVCIGCEWHPLE 573 (590)
Q Consensus 505 ---~~~~~~~~~~~~~~-~~~v~~v~~s-pdg~~l~sgs~dg~I~iwd~~t-~---~~~~~l~~h~--~~V~~v~~sp~~ 573 (590)
......+. -|... ......+++. .+|.++++--....|..|+..+ . .....+.... .-+.++.+.+ +
T Consensus 257 ~~~~~~~~v~~-~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~ 334 (381)
T 3q6k_A 257 KQKGGKLNPEL-LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-K 334 (381)
T ss_dssp SSTTCCCCCEE-EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-T
T ss_pred hCcchhhceEE-eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-C
Confidence 11111111 11110 1223346675 6787777777888999999875 1 1223332111 2457777766 4
Q ss_pred CCEEEEE
Q 007768 574 QSKVATC 580 (590)
Q Consensus 574 ~~~l~s~ 580 (590)
+.+.++.
T Consensus 335 g~Lwv~s 341 (381)
T 3q6k_A 335 GGLWFMS 341 (381)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 4454444
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.55 E-value=7.9 Score=40.44 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=59.6
Q ss_pred CceeEEEEeCCCC-EEEEEeCCCcEEEEECCCC---cEEEEeec--------CCCCceeEEEEcCC----CCEEEEEEcC
Q 007768 430 GAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIP---VVIKYISE--------PHMHSMPSISLHPN----TNWLAAQSLD 493 (590)
Q Consensus 430 ~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~---~~~~~~~~--------~~~~~i~~i~~sp~----g~~la~~s~d 493 (590)
.....|+|.|++. +|+++...|.|++++.... ..+..+.. ........|+++|+ +.+.++-+..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999986 5666677899999975322 12222211 01346788999996 4333333321
Q ss_pred ------------CeEEEEEcCCc--e-----eecccccccCcccccceEEEEEcCCCCEEEEEcC
Q 007768 494 ------------NQILIYSTRER--F-----QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 494 ------------g~I~iwd~~~~--~-----~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
..|.-|.+... . ....+..............|.|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 14555665421 0 0001111110011233567999999987666554
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=81.44 E-value=41 Score=32.70 Aligned_cols=236 Identities=7% Similarity=-0.016 Sum_probs=120.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCeeEE---------EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEEC---CC-----
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGKCMR---------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT---ET----- 374 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~---------~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~---~t----- 374 (590)
..++++.+.+|.|+--.+. ..+..+ .+. -...+..+........|+..+..|.+.-... ..
T Consensus 3 e~~~v~~T~~G~iKr~~~~-~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLS-EYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CEEEEEEETTSEEEEEECC----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CcEEEEEeCCCEEEEeeHH-HhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 4678888999999876652 111110 111 2234444444555566777777787665543 22
Q ss_pred -CcEEE---EecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-------CceEEEEcCcCCceeEEEEeCCCCE
Q 007768 375 -GQVIR---TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 375 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-------~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
|..+. .+..+..+..+...........++..+..|.++...+.. +.....+..+ +.+..+........
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22211 122222222222221112235788899999999887642 1122223333 56666666656667
Q ss_pred EEEEeCCCcEEEEECCC-------CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc----ccc
Q 007768 444 FVTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----KKR 512 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~----~~~ 512 (590)
++..+..|.+..+.... ..-+..+.......|.++....++..|++.+..|.++-.++..-....+ ...
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~ 239 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence 88888889888887632 1112222223345566666555566788889999988887643211111 000
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
+.-....+.+..+....+...|+..+.+|.+.-+.+..
T Consensus 240 ~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 240 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11001113333333333344555666677766666544
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=77.12 E-value=92 Score=34.24 Aligned_cols=229 Identities=10% Similarity=0.109 Sum_probs=115.7
Q ss_pred EEEE-EccCCCEEEEE-ec----CCeEEEEECCCCcEEE-Eec-CCCc-------ceEEEEecCCCCCcEEEEE------
Q 007768 347 RDIS-FCNDGTKFLTA-SY----DKNIKYWDTETGQVIR-TFS-TGKI-------PYVVKLNPDDDKQNILLAG------ 405 (590)
Q Consensus 347 ~~l~-fspdg~~l~s~-s~----Dg~I~vWd~~t~~~~~-~~~-~~~~-------~~~~~~~~~~~~~~~lvsg------ 405 (590)
..+. ++|++++++.+ |. -..|+++|+.+++.+. .|. ..+. ...+.|... + .++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~--~~~~~~~~~~~~ 208 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-D--TIIFNLVLHKNE 208 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-T--EEEECCCCSTTC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-C--EEEEEeCCCCCC
Confidence 3444 78888877654 22 2479999999998763 122 1111 023355421 1 233321
Q ss_pred ----ECCCeEEEEeCCCC--ceEEEEcCcCCce-eEEEEeCCCC-----EEEEEeCC---CcEEEEECCCC-cEEEEeec
Q 007768 406 ----MSDKKIVQWDMNTK--EITQEYDQHLGAV-NTITFVDSNR-----RFVTSSDD---KSLRVWEFGIP-VVIKYISE 469 (590)
Q Consensus 406 ----~~dg~I~iwD~~t~--~~~~~~~~h~~~V-~~i~~~p~~~-----~l~s~s~D---g~I~iwdl~~~-~~~~~~~~ 469 (590)
+...+|+.|.+-+. +-...+......+ .+...+++++ .+++.+.+ ..+++.+...+ ..+..+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 11256888887664 2223343333332 2344455655 24444422 34566666532 22334433
Q ss_pred CCCCceeEEEEcCCCCEEEEE----------EcCCeEEEEEcCCcee----ecccccccCcccccceEEEEEcCCCCEEE
Q 007768 470 PHMHSMPSISLHPNTNWLAAQ----------SLDNQILIYSTRERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~la~~----------s~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
+.... +..+..+.+++.. ...+.|.+.++.+... ......+-.+.....+..+.+..+ .+++
T Consensus 289 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 289 PSDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp CTTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred CCcce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 33322 2334455444422 2457788888866421 011111112222445667888876 5666
Q ss_pred EEcCCCc--EEEEeCCCCe-EEEE-EecC-CCcEEEEEEcCCCCCEEEEEeC
Q 007768 536 SGDGEGK--CWFWDWKSCK-VFRT-LKCH-EGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 536 sgs~dg~--I~iwd~~t~~-~~~~-l~~h-~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
+...+|. |.++++.++. .... +... .+.+..+.+.+++..++++.+.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss 416 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIEN 416 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEEC
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEec
Confidence 7666664 7778876665 2333 3322 2456666666655556666554
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=77.04 E-value=92 Score=34.22 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=116.5
Q ss_pred eeEEE-EcCCCCCEEEEEeCC----CcEEEEecCCCCeeEE-EeccCC-C------CeEEEEEccCCCEEEEE-------
Q 007768 302 VSAIR-FFPKYGHLILSAGMD----TKVKIWDVVNSGKCMR-TYMGHS-K------AVRDISFCNDGTKFLTA------- 361 (590)
Q Consensus 302 V~~l~-~sp~~g~~L~sgs~D----g~I~iWd~~~~~~~~~-~~~~h~-~------~V~~l~fspdg~~l~s~------- 361 (590)
...+. ++|++..++++-|.. ..|+++|+ .+++.+. .+..-. . ....++|..+..++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~-~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDL-EKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEET-TTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEEC-CcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 34444 788844444444433 36999999 5665542 111000 0 11345787444444432
Q ss_pred ---ecCCeEEEEECCCCc--EEEEecCCCcceEEEEecCCCCCc----EEEEEEC---CCeEEEEeCCC--CceEEEEcC
Q 007768 362 ---SYDKNIKYWDTETGQ--VIRTFSTGKIPYVVKLNPDDDKQN----ILLAGMS---DKKIVQWDMNT--KEITQEYDQ 427 (590)
Q Consensus 362 ---s~Dg~I~vWd~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~----~lvsg~~---dg~I~iwD~~t--~~~~~~~~~ 427 (590)
++...|+.|.+.+.. -...+........+......+... ++++.+. ...+++.|... ++. ..+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence 123578899887652 223333322222222222222222 3444432 24567777653 332 22322
Q ss_pred cCCceeEEEEeCCCCEEEEE----------eCCCcEEEEECCCCc-------EEEE-eecCCCCceeEEEEcCCCCEEEE
Q 007768 428 HLGAVNTITFVDSNRRFVTS----------SDDKSLRVWEFGIPV-------VIKY-ISEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~----------s~Dg~I~iwdl~~~~-------~~~~-~~~~~~~~i~~i~~sp~g~~la~ 489 (590)
... ..+..+..+.+++.. ...+.|.+.++..+. .... +.......+..+.+..+ .++++
T Consensus 289 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 222 122334455554432 246779999987631 2222 43334556778888865 56666
Q ss_pred EEcCCe--EEEEEcCCce-eecccccccCcccccceEEEEEcCCCC-EEEEEc---CCCcEEEEeCC
Q 007768 490 QSLDNQ--ILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD---GEGKCWFWDWK 549 (590)
Q Consensus 490 ~s~dg~--I~iwd~~~~~-~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs---~dg~I~iwd~~ 549 (590)
...++. |.++++.++. .......+.. .+.+..+.+++++. ++++.+ .-+.++.+|+.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~---~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPY---QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCS---TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCC---CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 677765 5666655442 1111011211 12344455667665 444433 24678888876
No 359
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=76.93 E-value=98 Score=34.45 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=77.5
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccC-------CCCeEEEEEccC-CCEEEEEecCCe----
Q 007768 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFCND-GTKFLTASYDKN---- 366 (590)
Q Consensus 299 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fspd-g~~l~s~s~Dg~---- 366 (590)
.+.|.+|+++|.+...++.++..+.|...+ ..++.-..+..+ ...|.+|++.|. ...++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 357999999998677788888777765554 345444444332 246999999983 344544432211
Q ss_pred EEEE-ECCCCcEEEEecCC----------CcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcC------cC
Q 007768 367 IKYW-DTETGQVIRTFSTG----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ------HL 429 (590)
Q Consensus 367 I~vW-d~~t~~~~~~~~~~----------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~------h~ 429 (590)
-.|| ....|+.-..+... .....+.+.+... ..++++...+.|.. ....|+.-..+.. ..
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~--~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNS--NEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEE--EEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTT
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCC--CEEEEEeccCCEEE-ECCCCcccCCCccCccccCCC
Confidence 2333 33444433332211 0123466665432 45666664444322 2223333233321 12
Q ss_pred CceeEEEEeCC-CCEEEEEeCC
Q 007768 430 GAVNTITFVDS-NRRFVTSSDD 450 (590)
Q Consensus 430 ~~V~~i~~~p~-~~~l~s~s~D 450 (590)
..+..|.+.|. +..++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 45778888874 3455555544
No 360
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=76.04 E-value=68 Score=32.14 Aligned_cols=149 Identities=10% Similarity=0.015 Sum_probs=84.5
Q ss_pred ccCCCEEEEEecCCeEEEEECCC---------CcEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEe---CCC-
Q 007768 352 CNDGTKFLTASYDKNIKYWDTET---------GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD---MNT- 418 (590)
Q Consensus 352 spdg~~l~s~s~Dg~I~vWd~~t---------~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD---~~t- 418 (590)
-++...+++.+.+|.|+--.+.. +..-..+..+.....+..... ...++..+..|.++-+. +..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t---~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNT---HDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECT---TCEEEEEETTSEEEEEEGGGSCBC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecC---CCEEEEEeCCCeEEEEEHHHCcCC
Confidence 45677899999999999765421 222233333333322222222 24566677788877664 322
Q ss_pred -----CceEEEE-c-CcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCCceeEEEEcCC
Q 007768 419 -----KEITQEY-D-QHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 419 -----~~~~~~~-~-~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
|..+..+ . .....|.++.... .+.+|+.++..|.++...+..- .-+..+.......+..+.....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 2111111 1 1234566655543 4568999999999998886321 1122222222344555555555
Q ss_pred CCEEEEEEcCCeEEEEEcCC
Q 007768 484 TNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 484 g~~la~~s~dg~I~iwd~~~ 503 (590)
...|+..+..|.+..|....
T Consensus 161 ~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGG
T ss_pred CceEEEEeCCCeEEEEEccc
Confidence 66788889999998888654
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.70 E-value=57 Score=31.12 Aligned_cols=197 Identities=7% Similarity=0.014 Sum_probs=108.9
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEE---ecCCCCeeEEEeccCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCC
Q 007768 300 KGVSAIRFFPKYGHLILSAGMDTKVKIW---DVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 300 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iW---d~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
..+..+..... ...|+.-+..|.++-- ++......- +......|..+.... +...++.++.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t-~~~ll~fT~~G~v~~~~~~~lp~~~~~~--ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPF-TEGLFLVSNRGRVYWIAGSQALQGSKVS--LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEET-TSCEEEEETTSEEEEECSHHHHTSEECC--CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECC-CCEEEEEcCCCeEEEEEhhhCccCcccc--cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 34555555554 4556666677876643 332111110 122355666664422 5678999999999999987543
Q ss_pred c----EEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC---------CceEEEEcCcCCceeEEEEeCCCC
Q 007768 376 Q----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---------KEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 376 ~----~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t---------~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
. -+..+........+...... ....++..+..|.++.+.... |.....+. ....|..+...+++.
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEP 178 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCS
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCC
Confidence 2 11122222222222222222 224688888899988886532 11111222 235676766666677
Q ss_pred EEEEEeCCCcEEEEECCC-------CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEE--EEcCC
Q 007768 443 RFVTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI--YSTRE 503 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~i--wd~~~ 503 (590)
.++..+..|.++...+.. +.-+..+ .....+..+........++..+.+|.+.. ++...
T Consensus 179 ~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 179 YLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 899999999999887632 2223333 22334444443334456777778888777 77654
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=74.60 E-value=73 Score=31.86 Aligned_cols=231 Identities=10% Similarity=0.152 Sum_probs=116.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCe----------eEEEecc-CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC-----
Q 007768 312 GHLILSAGMDTKVKIWDVVNSGK----------CMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG----- 375 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~----------~~~~~~~-h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~----- 375 (590)
....+.-..||.|..|-....++ ....+.. ....+..++++.-..+.+.-..||.|..|-....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 45556667788899886421111 1111221 2234556677766667777788999999964321
Q ss_pred ------cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-c---------eEE-EEcC-cCCceeEEEE
Q 007768 376 ------QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E---------ITQ-EYDQ-HLGAVNTITF 437 (590)
Q Consensus 376 ------~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~---------~~~-~~~~-h~~~V~~i~~ 437 (590)
.....+..-....+..+..-. ...++-..+|.|+.|-.... + ... .+.. ....|..|+.
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~ 218 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC 218 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEE
Confidence 011111111111233333322 34566678999999975421 1 111 1111 1234666665
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCC-----------cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007768 438 VDSNRRFVTSSDDKSLRVWEFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~~-----------~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~ 506 (590)
.......+....+|.|+.|-.... .....+.......|..|+.- ..+.++-..+|.|+.|-.....+
T Consensus 219 G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~Gq 296 (389)
T 3kci_A 219 GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHR 296 (389)
T ss_dssp CCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGT
T ss_pred cCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCC
Confidence 433356677778999999975321 11112211122235555443 44555567899999997643211
Q ss_pred ec--------ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 507 LN--------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 507 ~~--------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
+- ....... .....|..|+. .....++-..+|.|+.|-...
T Consensus 297 LG~g~~~~~~~P~~v~~-l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 297 LGHGSDDHVRRPRQVQG-LQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp TCSSSCCCEEEEEECGG-GTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred CCCCCCccccCCeEecc-CCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 10 0000000 00123444443 344555567889999997643
No 363
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=73.77 E-value=69 Score=31.15 Aligned_cols=194 Identities=9% Similarity=0.045 Sum_probs=106.5
Q ss_pred cCCCEEEEEecCCeEEEEECCCCcE-------EEEe--cCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC---CC-
Q 007768 353 NDGTKFLTASYDKNIKYWDTETGQV-------IRTF--STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TK- 419 (590)
Q Consensus 353 pdg~~l~s~s~Dg~I~vWd~~t~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---t~- 419 (590)
++...+++.+.+|.|+--.+..-+. +..+ ..+.....+..... ...++..+..|.++-+... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~---~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT---HDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET---TCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC---CCEEEEEECCCeEEEEEHHHCCCCC
Confidence 4566788899999999886643321 2122 12222222222222 2357777888887776553 11
Q ss_pred -----ce---EEEEcCcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCCceeEEEEcCC
Q 007768 420 -----EI---TQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 420 -----~~---~~~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
.. ...+. ....|.++...+ +..+|+..+..|.++...+..- .-+..+.......+..+.....
T Consensus 83 r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred ccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 10 00111 223455554443 4668888999999998877321 1122222223455666665555
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecc-cccccCcc--cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007768 484 TNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHI--VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 484 g~~la~~s~dg~I~iwd~~~~~~~~~-~~~~~~~~--~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
...++..+.+|.+..+....-....+ ......-. ....+..+..-.++..|++.+..|.+....+..
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 66788899999999998764211111 00000000 123445555555667788889999999888743
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=71.02 E-value=74 Score=30.32 Aligned_cols=151 Identities=10% Similarity=0.028 Sum_probs=86.0
Q ss_pred CcEEEEEECCCeEEEEeCCCCc------eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-------CcEEE
Q 007768 399 QNILLAGMSDKKIVQWDMNTKE------ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-------PVVIK 465 (590)
Q Consensus 399 ~~~lvsg~~dg~I~iwD~~t~~------~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-------~~~~~ 465 (590)
...++..+.+|.|+...+..-. ....+. ....+..+........++..+..|.+..+.... ..-+.
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred CCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE
Confidence 3689999999999998765421 111222 234555555555666888888999988887521 11122
Q ss_pred EeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc-ccccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007768 466 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK-KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 544 (590)
Q Consensus 466 ~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~ 544 (590)
.+.......|..+...+++..++..+..|.++...+..-....+- +..........+..+....+...++..+.+|.+.
T Consensus 159 ~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 159 GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 222223455666666666778889999999998887542211110 0000001122333333333444566667777777
Q ss_pred E--EeCCC
Q 007768 545 F--WDWKS 550 (590)
Q Consensus 545 i--wd~~t 550 (590)
. ++...
T Consensus 239 r~~~~~~~ 246 (276)
T 3no0_A 239 YDKINQKD 246 (276)
T ss_dssp EEEEEGGG
T ss_pred EeeeCHHH
Confidence 7 76543
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=69.52 E-value=85 Score=30.46 Aligned_cols=190 Identities=10% Similarity=0.034 Sum_probs=110.5
Q ss_pred CCEEEEEeCCCcEEEEecCCC------CeeEE--EeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC---C-----
Q 007768 312 GHLILSAGMDTKVKIWDVVNS------GKCMR--TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET---G----- 375 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~------~~~~~--~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t---~----- 375 (590)
..++++.+.+|.|+--.+..- +.-+. .+. -...+..+........++..+..|.++-..... .
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 567888999999988766211 01111 122 223455555555566788888888877765531 1
Q ss_pred -cE---EEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-------CceEEEEcCcCCceeEEEEeCCCCEE
Q 007768 376 -QV---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 376 -~~---~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-------~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
.. ...+..+.....+...........++..+..|.++...+.. |.....+.. .+.+..+........+
T Consensus 87 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 87 GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp -CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 10 00122222222222222111235688889999999887742 222222332 4566666666666788
Q ss_pred EEEeCCCcEEEEECCC-------CcEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 445 VTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
+..+..|.+..+.... ..-+..+.......+.++..-.++..|++.+..|....+.+..
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 8899999998888643 1122223223345566666655667788889999999988754
No 366
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=67.09 E-value=1.2e+02 Score=31.29 Aligned_cols=54 Identities=11% Similarity=0.104 Sum_probs=34.3
Q ss_pred CCeeEEEEcCCCCC-EEEEEeCCCcEEEEecCCC--CeeEEEec---------cCCCCeEEEEEccC
Q 007768 300 KGVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNS--GKCMRTYM---------GHSKAVRDISFCND 354 (590)
Q Consensus 300 ~~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~~~~--~~~~~~~~---------~h~~~V~~l~fspd 354 (590)
..-..|+|.|+ +. .|+++...|.|++++.... ...+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 34578999999 54 5666678899999975211 11222221 11456889999995
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.62 E-value=2e+02 Score=33.44 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe
Q 007768 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
+.+++..++..+|++-+.|++++||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3446677888999999999999999999999988764
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=62.31 E-value=1.3e+02 Score=29.97 Aligned_cols=261 Identities=12% Similarity=0.100 Sum_probs=123.5
Q ss_pred CEEEEEeCCCcEEEEecCCCCee-------EEE---ecc-CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC------
Q 007768 313 HLILSAGMDTKVKIWDVVNSGKC-------MRT---YMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG------ 375 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~-------~~~---~~~-h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~------ 375 (590)
..++.-..||+|..|=....+++ ... +.. ....|..|+. .....+.-..||.|..|-....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 45555566888888865322211 111 110 1123444443 3445666677899999964321
Q ss_pred --c---EEEEecC--CCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-c----------eEEEEcCc-CCceeEEE
Q 007768 376 --Q---VIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E----------ITQEYDQH-LGAVNTIT 436 (590)
Q Consensus 376 --~---~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~----------~~~~~~~h-~~~V~~i~ 436 (590)
. ....+.. ......+.+..- ....++-..+|.|+.|-.... + ....+... ...|..|+
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~G---~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va 165 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNSG---GKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECTT---CSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CcCCccCCEEcccccCCceeEEEECcC---CCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE
Confidence 1 1111111 111223344332 245666678999999965421 0 11111111 12455555
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC-----------cEEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007768 437 FVDSNRRFVTSSDDKSLRVWEFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~-----------~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~ 505 (590)
.. ....+....+|.|+.|-.... .....+.......|..++......+.++...+|.|+.|-.....
T Consensus 166 ~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 166 AG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG 243 (389)
T ss_dssp EC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred eC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Confidence 43 445666678999999975321 11122222233456666654434567777889999999754321
Q ss_pred ee-----------cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----------e-EEEEEec-CCC
Q 007768 506 QL-----------NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----------K-VFRTLKC-HEG 562 (590)
Q Consensus 506 ~~-----------~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~----------~-~~~~l~~-h~~ 562 (590)
++ .....+. ...+..++.. ..+.++-..+|.|+.|-.... . ....+.. ...
T Consensus 244 qLG~g~~~~~~~p~~v~~~~----~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 317 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKIDSLT----GLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK 317 (389)
T ss_dssp TTSSSSCCCEEEEEECGGGT----TSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTC
T ss_pred CCCCCCCCCccccEEecccC----CCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCC
Confidence 11 0111111 1124444443 334444567889999965321 0 1111111 123
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 563 VCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.|..++.. ....+....||.|..|
T Consensus 318 ~v~~ia~G---~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 318 KVIAIATG---SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp CEEEEEEC---SSEEEEEETTCCEEEE
T ss_pred CEEEEEec---cCeEEEECCCCCEEEe
Confidence 56666663 3455666788888888
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.64 E-value=1.2e+02 Score=29.32 Aligned_cols=228 Identities=7% Similarity=0.021 Sum_probs=117.5
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEE---------ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeC---CC---
Q 007768 354 DGTKFLTASYDKNIKYWDTETGQVIRT---------FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM---NT--- 418 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~---------~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~---~t--- 418 (590)
+...+++.+.+|.|+--.+...+..+. +..+.....+..... ...++..+..|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~---~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT---HDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEET---TCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECC---CCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 455788889999998877654332211 112222222222221 235777777888766544 22
Q ss_pred ---CceEE---EEcCcCCceeEEEEe---CCCCEEEEEeCCCcEEEEECCC---C--cEEEEeecCCCCceeEEEEcCCC
Q 007768 419 ---KEITQ---EYDQHLGAVNTITFV---DSNRRFVTSSDDKSLRVWEFGI---P--VVIKYISEPHMHSMPSISLHPNT 484 (590)
Q Consensus 419 ---~~~~~---~~~~h~~~V~~i~~~---p~~~~l~s~s~Dg~I~iwdl~~---~--~~~~~~~~~~~~~i~~i~~sp~g 484 (590)
|..+. .+ .....|.++... .++.+++..+..|.++-..+.. . .-+..+.......+..+......
T Consensus 79 ~a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CCCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC
Confidence 21111 11 123456666543 3456899999999999987631 1 11222211223555555555556
Q ss_pred CEEEEEEcCCeEEEEEcCCceeeccc-ccccC--cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC---------e
Q 007768 485 NWLAAQSLDNQILIYSTRERFQLNKK-KRFAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---------K 552 (590)
Q Consensus 485 ~~la~~s~dg~I~iwd~~~~~~~~~~-~~~~~--~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~---------~ 552 (590)
..++..+..|.+..+....-...... ....+ -.....+..+....++..|++.+..|.++-.++... .
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 67888899999988887542211110 00000 001234555554455667888899999888876321 1
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCEEEEEeCCCcE
Q 007768 553 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 553 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~Dg~I 586 (590)
....+..-.+.+..+.... +..-|+..+.+|.+
T Consensus 238 ~~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVD-DCDQIMMITDAGTL 270 (307)
T ss_dssp ESSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCE
T ss_pred EeeEecCCCCeEEEEEEeC-CCceEEEEcCCCcE
Confidence 1222222334555554443 23445555666654
No 370
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=59.50 E-value=1.3e+02 Score=29.24 Aligned_cols=190 Identities=11% Similarity=0.010 Sum_probs=105.2
Q ss_pred CCEEEEEeCCCcEEEEecC---CCCeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEECC---------CCcEEE
Q 007768 312 GHLILSAGMDTKVKIWDVV---NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE---------TGQVIR 379 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~---~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~---------t~~~~~ 379 (590)
..++++.+.+|.|+--.+. ..+.....+.. ...+..+........|+..+..|.+.-.... .|..+.
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~ 83 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChh
Confidence 5678888999998876552 01111111222 2345555555556677777778876655442 122211
Q ss_pred E---ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC--------CceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007768 380 T---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT--------KEITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 380 ~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t--------~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
. +..+..+..+.....-.....++..+..|.++...+.. +.....+.. .+.+..+........++..+
T Consensus 84 ~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T 162 (323)
T 1wp5_A 84 NIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVT 162 (323)
T ss_dssp GTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEE
T ss_pred hccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEe
Confidence 1 12222222222222111235688889999999887642 211112222 25566666666666788888
Q ss_pred CCCcEEEEECCC-------CcEEEEeecCCCCceeEEEEcCCCC-EEEEEEcCCeEEEEEcCC
Q 007768 449 DDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 449 ~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp~g~-~la~~s~dg~I~iwd~~~ 503 (590)
.+|.+..+.... ..-++.+.......|.++...+.+. .|++.+..|..+..++..
T Consensus 163 ~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 163 HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 899888887632 1122223223344566665544455 788888899888877754
No 371
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.03 E-value=2.4e+02 Score=32.04 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeEEEEEe
Q 007768 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667888899999999999999999999999988764
No 372
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=56.55 E-value=1.6e+02 Score=29.29 Aligned_cols=193 Identities=9% Similarity=0.105 Sum_probs=107.9
Q ss_pred cCCCCCEEEEEeCCCcEEEEecC-----C-C--CeeEEEeccCCCCeEEEEEccCCCEEEEEecCCeEEEEEC---C---
Q 007768 308 FPKYGHLILSAGMDTKVKIWDVV-----N-S--GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT---E--- 373 (590)
Q Consensus 308 sp~~g~~L~sgs~Dg~I~iWd~~-----~-~--~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~---~--- 373 (590)
-|+ ..++++.+.+|.|+--.+. . . +.....+. ....+..+........|+..+..|.+.-+.. .
T Consensus 4 I~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 355 6789999999999876541 1 1 11222232 3455666666656667777777787665543 2
Q ss_pred ---CCcEEEE---ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCC-------CceEEEEcCcCCceeEEEEeCC
Q 007768 374 ---TGQVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 374 ---t~~~~~~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t-------~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
.|..+.. +..+..+..+...........|+.++..|.++...+.. +.....+.. .+.+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 1222111 22222222222222212335899999999999887642 222222322 445555666656
Q ss_pred CCEEEEEeCCCcEEEEECCC-------CcEEEEeecCCCCceeEEEEcC-------------------------------
Q 007768 441 NRRFVTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHP------------------------------- 482 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp------------------------------- 482 (590)
...++..+..|.+..+.... ..-++.+.......|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 66788888888888887532 1112222222334455554443
Q ss_pred ----CCCEEEEEEcCCeEEEEEcCC
Q 007768 483 ----NTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 483 ----~g~~la~~s~dg~I~iwd~~~ 503 (590)
.+..+++.+..|..+...+..
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHH
Confidence 446788889999998888754
No 373
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.85 E-value=2.9e+02 Score=31.38 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=30.1
Q ss_pred ceeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc
Q 007768 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 509 (590)
Q Consensus 474 ~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~~~~ 509 (590)
.+.+++..++..++++-+.|+++++|++.++..+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 466777788889999999999999999988766543
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.28 E-value=56 Score=38.22 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=33.1
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC
Q 007768 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
.+.+++..++..++++-+.|+++|||++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 456667777888999999999999999999999987653
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=48.18 E-value=50 Score=35.41 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=44.2
Q ss_pred eeEEEEeCCCCEEEEEeCC------------CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEE
Q 007768 432 VNTITFVDSNRRFVTSSDD------------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~D------------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s 491 (590)
.-.|+|++.|+++++...+ ..+.+.+...+.....+..+....++.++|+|+++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4568999999877766533 23555566667777777777788899999999998887753
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.69 E-value=63 Score=34.66 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=41.2
Q ss_pred EEEEEcCCCCEEEEEcCC------------CcEEEEeCCCCeEEEEEecCC-CcEEEEEEcCCCCCEEEE
Q 007768 523 CQVNFSPDGRFVMSGDGE------------GKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~d------------g~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s 579 (590)
-.|+|+|.|+++++-+.+ ..+.+.+..++++...+.++. ..++.++|+|+ ++.|+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspD-g~tlfv 547 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD-QKTLFV 547 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT-SSEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCC-CCEEEE
Confidence 458999999987776543 246677778888887777764 58999999995 444443
No 377
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=44.87 E-value=2.3e+02 Score=27.59 Aligned_cols=188 Identities=9% Similarity=0.024 Sum_probs=103.5
Q ss_pred CCEEEEEeCCCcEEEEec---CC-----CCeeEEEec--cCCCCeEEEEEcc---CCCEEEEEecCCeEEEEECCCCcE-
Q 007768 312 GHLILSAGMDTKVKIWDV---VN-----SGKCMRTYM--GHSKAVRDISFCN---DGTKFLTASYDKNIKYWDTETGQV- 377 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~---~~-----~~~~~~~~~--~h~~~V~~l~fsp---dg~~l~s~s~Dg~I~vWd~~t~~~- 377 (590)
...|+.-+..|.++-..+ .. .+..+..+. .....|..+...+ +..+++.++.+|.|+...+.....
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 455555566676655443 21 122221111 1234455554333 577999999999999988654221
Q ss_pred ----EEE--ecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCC--CCc---------eEEEEcCcCCceeEEEEeCC
Q 007768 378 ----IRT--FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN--TKE---------ITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 378 ----~~~--~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~--t~~---------~~~~~~~h~~~V~~i~~~p~ 440 (590)
+.. +..+.....+.... . ...++..+..|.+..+... .-. ....+ .....|.++...+.
T Consensus 133 ~r~G~~~i~lke~D~lv~~~~~~-~--~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~ 208 (327)
T 3uc1_A 133 RSGGIVAVNLRDNDELVGAVLCS-A--GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVRE 208 (327)
T ss_dssp CSSCEESCBCCTTCCEEEEEEEC-T--TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCT
T ss_pred ccCceEEEEECCCCEEEEEEEec-C--CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECC
Confidence 222 22222222222222 2 2457788889998888766 211 11112 12445777777767
Q ss_pred CCEEEEEeCCCcEEEEECCCC-------cEEEEeecCC-CCceeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007768 441 NRRFVTSSDDKSLRVWEFGIP-------VVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~-------~~~~~~~~~~-~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~ 503 (590)
+..++..+..|.++.-.+..- .-+..+.... ...+..+........++..+.+|.+..+....
T Consensus 209 ~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 209 GTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 778999999999988876321 2222222111 23344444444556677778888888887654
No 378
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=44.32 E-value=3.5e+02 Score=29.54 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=38.8
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCeeEEEeccC-------CCCeEEEEEcc-CCCEEEEEe
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFCN-DGTKFLTAS 362 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fsp-dg~~l~s~s 362 (590)
.|..|+++|.+...|+.+...+.|..++ ..++.-..+..+ ...|.+|+++| +...++.+.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 7999999998667777777666655554 345444444332 24599999998 434444443
No 379
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.97 E-value=2.6e+02 Score=27.11 Aligned_cols=194 Identities=9% Similarity=0.008 Sum_probs=102.8
Q ss_pred cCCCEEEEEecCCeEEEEECCCC----cEEEEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeC---CC------C
Q 007768 353 NDGTKFLTASYDKNIKYWDTETG----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM---NT------K 419 (590)
Q Consensus 353 pdg~~l~s~s~Dg~I~vWd~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~---~t------~ 419 (590)
|+...+++.+.+|.|+--.+... ..-..+..+.....+..... ...++..+..|.++-+.. .. |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t---~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNT---KDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEET---TSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECC---CCEEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 45567888888999887654311 10011222222222222222 235777777888766644 21 2
Q ss_pred ceEEE-Ec-CcCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCC------CcEEEEeecCCCCceeEEEEcCCCCEEE
Q 007768 420 EITQE-YD-QHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 420 ~~~~~-~~-~h~~~V~~i~~~p~---~~~l~s~s~Dg~I~iwdl~~------~~~~~~~~~~~~~~i~~i~~sp~g~~la 488 (590)
..+.. +. .....|.++...++ +.+++..+..|.++...+.. ..-+..+.......+..+........|+
T Consensus 80 ~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEE
Confidence 21111 11 12234665544443 56899999999999988731 1222222222335555555555666788
Q ss_pred EEEcCCeEEEEEcCCceeecc-cccccCc--ccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCC
Q 007768 489 AQSLDNQILIYSTRERFQLNK-KKRFAGH--IVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 489 ~~s~dg~I~iwd~~~~~~~~~-~~~~~~~--~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~ 549 (590)
..+.+|.+..|....-....+ .....+- .....+..+..-+++. .|++.+..|..+..++.
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 889999999998754221111 0000000 0123344454434444 78888888888877764
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.34 E-value=1.1e+02 Score=32.48 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=44.3
Q ss_pred CceeEEEEeCCCCEEEEEeCC------------CcEEEEECCCCcEEEEeecCCCCceeEEEEcCCCCEEEEEEc
Q 007768 430 GAVNTITFVDSNRRFVTSSDD------------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~D------------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~la~~s~ 492 (590)
.....|.|.++|.+.++.... ..|..++..++.....+..+....++.++|+|+++.|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 446789999999877754321 246666666666655555455678999999999998887643
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=37.56 E-value=4.5e+02 Score=28.93 Aligned_cols=147 Identities=7% Similarity=0.039 Sum_probs=72.1
Q ss_pred CCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCcEEEEecCC--------CcceEEEEecCCCCCcEEEEEECCCe---
Q 007768 343 SKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGMSDKK--- 410 (590)
Q Consensus 343 ~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~~dg~--- 410 (590)
...|.+|+++|. ...++.++..+.|...+ ..|+.-..+... .....+.+.+... ..++++.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~--~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP--DRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE--EEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCC--CEEEEEeCccCCCc
Confidence 468999999994 45667777667665554 334333333221 2344556665332 34555543211
Q ss_pred -EEEE-eCCCCceEEEEcCc-------C--CceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEeec-----CCCC
Q 007768 411 -IVQW-DMNTKEITQEYDQH-------L--GAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISE-----PHMH 473 (590)
Q Consensus 411 -I~iw-D~~t~~~~~~~~~h-------~--~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-----~~~~ 473 (590)
-.|| ....|+.-..+... . ..+..|++.|.. ..++.+...+.|. ...+.++.-..+.. ....
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTT
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCC
Confidence 2233 33334333332210 1 135678888753 4555555344332 22222333333321 1124
Q ss_pred ceeEEEEcCC-CCEEEEEEcC
Q 007768 474 SMPSISLHPN-TNWLAAQSLD 493 (590)
Q Consensus 474 ~i~~i~~sp~-g~~la~~s~d 493 (590)
.+..+.++|. +..++++..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 5788889884 4466666654
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=35.34 E-value=50 Score=36.25 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=30.7
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCcEEEEecC
Q 007768 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
.|.++.+ +..++++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 477999999999999999999999887765
No 383
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=34.96 E-value=3.6e+02 Score=26.93 Aligned_cols=187 Identities=8% Similarity=0.108 Sum_probs=97.4
Q ss_pred cEEEEecCCCC--eeEEEecc------CCCCeEEEEEc---cC----CCEEEEEe-cCCeEEEEECCCCcEEEEecCCCc
Q 007768 323 KVKIWDVVNSG--KCMRTYMG------HSKAVRDISFC---ND----GTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKI 386 (590)
Q Consensus 323 ~I~iWd~~~~~--~~~~~~~~------h~~~V~~l~fs---pd----g~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~~~ 386 (590)
+|.+||+ .+. +.++++.- ....+.++.+. +. +.++..+. ..+-|.|+|+.+++..+.....
T Consensus 124 kLv~~DL-~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 124 AIVAYDL-KQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp EEEEEES-SSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred eEEEEEC-CCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 4556777 344 55555432 13457778877 21 23434333 4678999999999887766311
Q ss_pred ceEEEEecCCCCCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC----CCEEEEEeCCCcEEEEEC----
Q 007768 387 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS----NRRFVTSSDDKSLRVWEF---- 458 (590)
Q Consensus 387 ~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~----~~~l~s~s~Dg~I~iwdl---- 458 (590)
+.++ .. ..+.. +|.-.. + ...|..|+++|+ ++.|.-....+. ++|.+
T Consensus 201 -----~~pd-~~-~~~~i---~G~~~~-----------~---~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~ 255 (381)
T 3q6k_A 201 -----FKAE-RP-TKFDY---GGKEYE-----------F---KAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKE 255 (381)
T ss_dssp -----GSCC-SC-EEEEE---TTEEEE-----------E---CCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHH
T ss_pred -----Cccc-cC-cceEE---CCEEeE-----------e---ccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHH
Confidence 1222 11 11111 122111 1 245888999987 677776665442 33433
Q ss_pred -CC---CcEEEEeecC-CCCceeEEEEc-CCCCEEEEEEcCCeEEEEEcCC-ceeecccccc-cCcccccceEEEEEcCC
Q 007768 459 -GI---PVVIKYISEP-HMHSMPSISLH-PNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRF-AGHIVAGYACQVNFSPD 530 (590)
Q Consensus 459 -~~---~~~~~~~~~~-~~~~i~~i~~s-p~g~~la~~s~dg~I~iwd~~~-~~~~~~~~~~-~~~~~~~~v~~v~~spd 530 (590)
+. ...++.+... ....-..++++ .+|.++++--..+.|..|+..+ .........+ ... .-.+...+.+..+
T Consensus 256 L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~ 334 (381)
T 3q6k_A 256 LKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSK 334 (381)
T ss_dssp HSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTT
T ss_pred hhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCC
Confidence 11 1222333221 12233456675 5677777777789999999875 3211111111 111 2345566777666
Q ss_pred CCEEEEEc
Q 007768 531 GRFVMSGD 538 (590)
Q Consensus 531 g~~l~sgs 538 (590)
|.+.+..+
T Consensus 335 g~Lwv~sn 342 (381)
T 3q6k_A 335 GGLWFMSN 342 (381)
T ss_dssp SCEEEEEC
T ss_pred CeEEEEEC
Confidence 66555443
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=34.20 E-value=1.3e+02 Score=32.86 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeEEEEEec
Q 007768 529 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 559 (590)
.+..+|++-+.|.++++|++.+++++.+...
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3578999999999999999999999887764
No 385
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=32.41 E-value=1.6e+02 Score=31.35 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=41.7
Q ss_pred ceEEEEEcCCCCEEEEEcC------------CCcEEEEeCCCCeEEEEEecC-CCcEEEEEEcCCCCCEEEEE
Q 007768 521 YACQVNFSPDGRFVMSGDG------------EGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~------------dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~ 580 (590)
....|.|+++|.+.++.+. ...|+.++..++++...+.+. ...++.++|+|++..++++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3456999999998875432 226777888788877767654 35689999999554444443
No 386
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=28.17 E-value=3.7e+02 Score=24.99 Aligned_cols=153 Identities=5% Similarity=-0.077 Sum_probs=0.0
Q ss_pred CCcEEEEEECCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC--------cEEEEeec
Q 007768 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--------VVIKYISE 469 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~iwD~~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~--------~~~~~~~~ 469 (590)
....+++.+.+|.|+--..........-......+..+........|+..+..|.++-+....- .....+..
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred CCCEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC
Q ss_pred CCCCceeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee-ecccccccCcccccceEEEEEc-CCCCEEEEEcCCCcEEEEe
Q 007768 470 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~la~~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~v~~v~~s-pdg~~l~sgs~dg~I~iwd 547 (590)
.....|.++....++.+|+.++..|.++...+..-.. ...-...-.......+..+... .++..|+..+.+|.+..+.
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Q ss_pred CCC
Q 007768 548 WKS 550 (590)
Q Consensus 548 ~~t 550 (590)
...
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
No 387
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=24.84 E-value=6.9e+02 Score=27.07 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=18.9
Q ss_pred CeEEEEEccC-CCEEEEEecCCeEEEEE
Q 007768 345 AVRDISFCND-GTKFLTASYDKNIKYWD 371 (590)
Q Consensus 345 ~V~~l~fspd-g~~l~s~s~Dg~I~vWd 371 (590)
.|..|+++|. ...++.+...+.|..++
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~ 51 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD 51 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC
Confidence 7999999995 35566666556665554
No 388
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=22.79 E-value=5.6e+02 Score=25.29 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=74.2
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCC----------c-EEEEeecCCCCceeEEEEcCCCCEEEEEEcCCeEEEE
Q 007768 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIP----------V-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~----------~-~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg~I~iw 499 (590)
.|..|+.. ....+....+|.|+.|-.... . ....+.......|..++. ...+.++-..+|.|+.|
T Consensus 122 ~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~hs~alt~~G~v~~w 197 (406)
T 4d9s_A 122 RIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA--GAEHTAAVTEDGDLYGW 197 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred CEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec--CCCeEEEEeCCCCEEEe
Confidence 46666553 445666678999999975421 1 111121112224555544 34566666789999999
Q ss_pred EcCCceeecc--------cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC-e---------E-EEEEec-
Q 007768 500 STRERFQLNK--------KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-K---------V-FRTLKC- 559 (590)
Q Consensus 500 d~~~~~~~~~--------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~-~---------~-~~~l~~- 559 (590)
-.....++-. ...... .....+..++. ...+.++-..+|.|+.|-.... + . ...+..
T Consensus 198 G~n~~GqlG~g~~~~~~~p~~v~~-~~~~~i~~va~--G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~ 274 (406)
T 4d9s_A 198 GWGRYGNLGLGDRTDRLVPERVTS-TGGEKMSMVAC--GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL 274 (406)
T ss_dssp ECCTTSTTCSSSSCCEEEEEECCC-STTCCEEEEEE--CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCCCCCCCCcCccEEecc-cCCceEEEEEE--CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEeccc
Confidence 7543211100 000000 01123333433 3344555567888988864321 1 1 111111
Q ss_pred CCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 560 HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 560 h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
....|..++. +....+....||.|..|
T Consensus 275 ~~~~v~~i~~---G~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 275 SNSFISQISG---GWRHTMALTSDGKLYGW 301 (406)
T ss_dssp TTSCEEEEEE---CSSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEe---cCCEEEEEcCCCeEEEe
Confidence 1234666655 33445555678888777
No 389
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=21.80 E-value=5.9e+02 Score=25.14 Aligned_cols=271 Identities=11% Similarity=0.136 Sum_probs=130.5
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecCCCCe----------eEEEecc-CCCCeEEEEEccCCCEEEEEecC-CeEE
Q 007768 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK----------CMRTYMG-HSKAVRDISFCNDGTKFLTASYD-KNIK 368 (590)
Q Consensus 301 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~----------~~~~~~~-h~~~V~~l~fspdg~~l~s~s~D-g~I~ 368 (590)
.|..|+.- ....+.-..||.|..|=....++ ....+.. ....|..|+... .+.+....+ +.|.
T Consensus 17 ~v~~ia~G---~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~--~ht~al~~~gg~v~ 91 (406)
T 4d9s_A 17 KVLIISAG---ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA--DHTVAYSQSGMEVY 91 (406)
T ss_dssp CEEEEEEC---SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTTTEEE
T ss_pred ceEEEecC---CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCc--ceEEEEECCCCEEE
Confidence 46666653 34455556788888886532221 1111211 223566666543 233333444 4899
Q ss_pred EEECCCC---------cEE--EEecCCCcceEEEEecCCCCCcEEEEEECCCeEEEEeCCCC-c---------eE-EEEc
Q 007768 369 YWDTETG---------QVI--RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E---------IT-QEYD 426 (590)
Q Consensus 369 vWd~~t~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~t~-~---------~~-~~~~ 426 (590)
.|-.... ... ..+.......+..+..-. ...++-..+|.|+.|-.... + .. ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~---~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh---hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 9954321 111 111111111233333322 34566678999999975431 1 11 1111
Q ss_pred Cc-CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC----------c-EEEEeecCCCCceeEEEEcCCCCEEEEEEcCC
Q 007768 427 QH-LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP----------V-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 427 ~h-~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~----------~-~~~~~~~~~~~~i~~i~~sp~g~~la~~s~dg 494 (590)
.. ...|..|+.. ....+....+|.|+.|-.... . ....+.......|..++. ...+.++-..+|
T Consensus 169 ~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~ht~~l~~~G 244 (406)
T 4d9s_A 169 AFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC--GWRHTISVSYSG 244 (406)
T ss_dssp GGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE--CSSEEEEEETTC
T ss_pred ccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE--CCCcEEEEcCCC
Confidence 11 1245555543 445666678999999975321 1 111221122234555544 344556667889
Q ss_pred eEEEEEcCCceeecc--------cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC-e--------E--EE
Q 007768 495 QILIYSTRERFQLNK--------KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-K--------V--FR 555 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~--------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~-~--------~--~~ 555 (590)
.|+.|-.....++-. ...+.. .....|..++. ...+.++-..+|.|+.|-.... + . -.
T Consensus 245 ~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 321 (406)
T 4d9s_A 245 ALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV 321 (406)
T ss_dssp CEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEE
T ss_pred CEEEeeCCCCCCCCCCCCcCccccEEecc-cCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCE
Confidence 999997543211100 000000 01122434433 3345555567888999864321 1 0 11
Q ss_pred EEe-cCCCcEEEEEEcCCCCCEEEEEeCCCcEEEc
Q 007768 556 TLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 556 ~l~-~h~~~V~~v~~sp~~~~~l~s~g~Dg~I~iW 589 (590)
.+. .....|..++.- ....+....||.|..|
T Consensus 322 ~v~~~~~~~v~~va~G---~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 322 QVRFPDDQKVVQVSCG---WRHTLAVTERNNVFAW 353 (406)
T ss_dssp EECCGGGCCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred EEeccCCCcEEEEEeC---CCeEEEEeCCCCEEEe
Confidence 111 122356666663 3455666678888887
No 390
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=20.74 E-value=2.4e+02 Score=25.41 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=57.0
Q ss_pred CcEEEEecCCCCeeEEEeccCCCCeEEEEEccCCCEEEE-EecCCeEEEEECCCCcEEEEecCCCcceEEEEecCCC--C
Q 007768 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD--K 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~--~ 398 (590)
..|.||.+ ..+.-+..|..-. +..|.....+-+. .-.+|.|++-+..++.|+.....+ . +....+.. .
T Consensus 69 ~~lt~Wa~-~~~nw~wgY~~~d----s~~FG~~r~W~i~~~~p~G~VqFvN~~TgtCL~ay~nG--v--v~~~C~~s~~~ 139 (206)
T 1sr4_A 69 ALLTVWAL-AKRNWLWAYPNIY----SQDFGNIRNWKMEPGKHREYFRFVNQSLGTCVEAYGNG--L--IHDICSLDKLA 139 (206)
T ss_dssp EEEEECSC-STTCBEEEEEGGG----CGGGGGGGCEEEEECSSTTCEEEEETTTCCEEEEETTE--E--EEECCCTTCGG
T ss_pred CEEEEEec-CCCcceeeecccc----cCCcCCcceeEEEeecCCCEEEEEECCCCceeeeccCC--e--EEecCCCCCcc
Confidence 35688988 5666565554221 1222222223333 456899999999999999886543 1 22222212 2
Q ss_pred CcEEEEEECCCeEEEEeCCCCceEEEE
Q 007768 399 QNILLAGMSDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 399 ~~~lvsg~~dg~I~iwD~~t~~~~~~~ 425 (590)
+.+-+.-+.+|.|.|=++.+++++...
T Consensus 140 Q~wsiiPttnGAVQIKnvatg~CL~t~ 166 (206)
T 1sr4_A 140 QEFELLPTDSGAVVIKSVSQGRCVTYN 166 (206)
T ss_dssp GCEEEEEBTTSCEEEEETTTCCEEEEC
T ss_pred cEEEEecCCCccEEEEECCCCccCCcc
Confidence 344555566788888888888888764
Done!