BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007769
         (590 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6EV76|FUT8_RAT Alpha-(1,6)-fucosyltransferase OS=Rattus norvegicus GN=Fut8 PE=2
           SV=1
          Length = 575

 Score = 35.4 bits (80), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 110/310 (35%), Gaps = 101/310 (32%)

Query: 214 DEENYPLTRKVQRDIWVHQHPPNCWDPNVRFLVADWERLPGFGIGAQIAGMCGLLAIAIN 273
           ++E   LT  VQR I   Q+P +C     R LV +  +  G G G Q+  +     IA  
Sbjct: 181 EKEAKDLTELVQRRITYLQNPKDC--SKARKLVCNINK--GCGYGCQLHHVVYCFMIAYG 236

Query: 274 EKRVLVTNYYNRADHDGCKGSSRSSWSCYFLPETSQECRDRAF--------ELMD-NKEA 324
            +R L+    N     G        W   F P  S+ C DR+         E+ D N + 
Sbjct: 237 TQRTLILESQNWRYATG-------GWETVFRP-VSETCTDRSGLSTGHWSGEVNDKNIQV 288

Query: 325 LEKGIITT---KDNY---SSKQIWAGRAPRVWGDPWSYLQPTTEINGTLIAYHRKMDRRW 378
           +E  I+ +   +  Y   +  +  A R  RV GDP                        W
Sbjct: 289 VELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAV----------------------W 326

Query: 379 WRAQAVRYLMRFLTEYTCGLLNVARHAAFGKEAAKMVLTGLPREWPNVEVANNSGSDIED 438
           W +Q V+YL+R                              P+ W   E+          
Sbjct: 327 WVSQFVKYLIR------------------------------PQPWLEKEIEE-------- 348

Query: 439 FVWSSHRPWIPRPMLSMHVRMGDK-ACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEM 497
              ++ +     P++ +HVR  DK   E      E+YM+    + +HF       L+  M
Sbjct: 349 ---ATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMV---HVEEHFQ-----LLARRM 397

Query: 498 QEVVDKSKLY 507
           Q  VDK ++Y
Sbjct: 398 Q--VDKKRVY 405


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,320,899
Number of Sequences: 539616
Number of extensions: 9047550
Number of successful extensions: 18621
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18619
Number of HSP's gapped (non-prelim): 4
length of query: 590
length of database: 191,569,459
effective HSP length: 123
effective length of query: 467
effective length of database: 125,196,691
effective search space: 58466854697
effective search space used: 58466854697
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)