Query 007769
Match_columns 590
No_of_seqs 166 out of 210
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 15:05:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3705 Glycoprotein 6-alpha-L 100.0 2.6E-81 5.6E-86 650.5 4.6 313 201-590 177-504 (580)
2 PF05830 NodZ: Nodulation prot 99.6 4.4E-16 9.5E-21 160.6 10.7 136 431-572 147-296 (321)
3 PF10250 O-FucT: GDP-fucose pr 99.0 9.5E-10 2.1E-14 113.8 8.2 37 540-576 308-344 (351)
4 PF01531 Glyco_transf_11: Glyc 98.3 2.3E-06 5.1E-11 88.6 9.9 98 449-572 162-267 (298)
5 PF03254 XG_FTase: Xyloglucan 97.8 0.00085 1.8E-08 74.3 16.6 115 451-572 301-437 (476)
6 KOG3849 GDP-fucose protein O-f 96.9 0.0022 4.8E-08 66.7 7.4 111 448-578 228-371 (386)
7 COG0859 RfaF ADP-heptose:LPS h 42.2 1.2E+02 0.0027 32.1 8.7 94 450-572 175-271 (334)
8 PF02348 CTP_transf_3: Cytidyl 42.1 1.2E+02 0.0026 29.3 7.9 54 455-508 4-60 (217)
9 PF15018 InaF-motif: TRP-inter 42.1 22 0.00048 27.2 2.2 22 29-50 9-30 (38)
10 PF01075 Glyco_transf_9: Glyco 39.2 1.1E+02 0.0025 30.0 7.4 92 448-570 103-201 (247)
11 KOG0673 Thymidylate synthase [ 37.6 1.2E+02 0.0025 32.1 7.2 105 448-560 110-229 (293)
12 PF03414 Glyco_transf_6: Glyco 37.0 39 0.00084 36.9 4.0 97 449-564 97-206 (337)
13 TIGR02195 heptsyl_trn_II lipop 32.6 2.5E+02 0.0054 29.2 9.1 96 449-571 173-270 (334)
14 COG1083 NeuA CMP-N-acetylneura 32.6 1.3E+02 0.0028 31.3 6.6 76 486-573 42-118 (228)
15 COG1212 KdsB CMP-2-keto-3-deox 32.0 1.1E+02 0.0025 32.0 6.2 47 486-533 41-87 (247)
16 COG1922 WecG Teichoic acid bio 31.3 2.1E+02 0.0045 30.2 8.1 74 473-561 92-171 (253)
17 PF03808 Glyco_tran_WecB: Glyc 29.7 2.1E+02 0.0045 27.7 7.3 73 488-575 48-126 (172)
18 cd06533 Glyco_transf_WecG_TagA 28.6 2E+02 0.0043 27.8 7.0 72 488-574 46-123 (171)
19 TIGR02193 heptsyl_trn_I lipopo 27.6 3.7E+02 0.008 27.7 9.2 92 449-570 178-272 (319)
20 cd02515 Glyco_transf_6 Glycosy 27.3 1.1E+02 0.0023 32.6 5.2 88 469-564 41-141 (271)
21 KOG1123 RNA polymerase II tran 25.0 34 0.00075 39.5 1.2 44 452-495 535-597 (776)
22 TIGR02201 heptsyl_trn_III lipo 24.5 5.2E+02 0.011 27.0 9.8 96 449-571 180-279 (344)
23 PF10206 WRW: Mitochondrial F1 20.7 1.2E+02 0.0027 27.9 3.7 64 201-276 34-97 (104)
24 TIGR02898 spore_YhcN_YlaJ spor 20.2 1.2E+02 0.0026 29.7 3.6 56 449-509 79-134 (158)
No 1
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-81 Score=650.50 Aligned_cols=313 Identities=21% Similarity=0.329 Sum_probs=271.5
Q ss_pred CCCCCCCCcccCCcCCChhhHHHHHHHHHhhcCCCCCCCCCCceEEEeeccCCCcchhHHHHHHHHHHHHHHhcCcEEEE
Q 007769 201 ISEGVYPPWITGSDEENYPLTRKVQRDIWVHQHPPNCWDPNVRFLVADWERLPGFGIGAQIAGMCGLLAIAINEKRVLVT 280 (590)
Q Consensus 201 ~~~~~~p~wi~g~dee~~pLT~~vQr~I~~~QNP~DCs~A~~KfLvc~~~~~cGfGcg~H~v~~C~~L~lA~~tgRtLIl 280 (590)
...+|+..|+ .+|...||++|||||.++|||+||++| |+|||+++++|||||++||++||+| +||+|.||||+
T Consensus 177 ~q~dG~e~wR---~Kea~dlt~lvqrri~~LQNPkdCs~A--kkLVCnlnKgCGyGCQLHHVvYCfi--~AyaTqRtliL 249 (580)
T KOG3705|consen 177 EQLDGSEEWR---FKEATDLTQLVQRRIEKLQNPKDCSEA--KKLVCNLNKGCGYGCQLHHVVYCFI--TAYATQRTLIL 249 (580)
T ss_pred HhccCcHHHH---HhHHhHHHHHHHHHHHHhcChHhhHHH--hhheeeccCCcccccceeeeeEeee--eeeecceEEEE
Confidence 3568999999 489999999999999999999999999 9999999999999999999999999 99999999999
Q ss_pred eCCCCcCCCCCCCCCCCCCccccccCCccccccchhc----cccchhhhccCcEEe--ccCCCCcccccCCCCCCCCCCC
Q 007769 281 NYYNRADHDGCKGSSRSSWSCYFLPETSQECRDRAFE----LMDNKEALEKGIITT--KDNYSSKQIWAGRAPRVWGDPW 354 (590)
Q Consensus 281 d~~~~~~h~Gc~g~~~~~WscyF~P~sS~~C~~~a~e----~~~~~~~~~~~Vv~~--~~~~~~~~~f~g~~P~p~~~P~ 354 (590)
++.+|.|+.| ||+.+|.|. |+.|.++++. |...... ..+||.+ .|++.++|+|+ |.++|+
T Consensus 250 ks~gWrY~~g-------GWe~VF~pv-S~~c~D~~~~nT~~wpg~~~~-n~qVv~LpIvDSL~prPpyL-----PlAVPE 315 (580)
T KOG3705|consen 250 KSDGWRYSSG-------GWESVFKPV-SKCCFDEAVGNTEAWPGAEPS-NAQVVSLPIVDSLIPRPPYL-----PLAVPE 315 (580)
T ss_pred ecCCceecCC-------Chhhhhhhh-hhcccccccccccCCCCCCCC-CceEEEeecccccCCCCCCc-----cccCcH
Confidence 9999988765 799999885 8999998653 3322111 2456666 78899999999 999999
Q ss_pred cccccccccccchhhhcccchhhHHHHHHHHHHhcCChHHHhhHHHHHhhhhhhHHHHHHHHhCCCCCCccccccCCCcc
Q 007769 355 SYLQPTTEINGTLIAYHRKMDRRWWRAQAVRYLMRFLTEYTCGLLNVARHAAFGKEAAKMVLTGLPREWPNVEVANNSGS 434 (590)
Q Consensus 355 ~~~~~l~~lhG~p~~~~~~~~~~WW~gQ~~~YLmRp~~e~l~~Lln~~R~~afG~~aa~~v~~~l~~~w~~~~~~~~~~~ 434 (590)
+++++++++||+| .+||+||+++||||||+.+- +.|+++ -+
T Consensus 316 dLa~rL~rlHgdP--------~vwwVgqFikYL~Rpqp~t~-~~l~~a------------------------------~k 356 (580)
T KOG3705|consen 316 DLAERLTRLHGDP--------PVWWVGQFIKYLMRPQPATQ-EKLDKA------------------------------LK 356 (580)
T ss_pred HHHHHHHHhcCCC--------ceeeHHHHHHHHhCCChhhH-HHHHHH------------------------------HH
Confidence 9999999999999 99999999999999999443 333321 12
Q ss_pred chhhhhhcCCCCCCCCCeEEEEEcCCccc-ccccccCHHHHHHHHHHHHH-----hCCCCcEEEEeCCchHHHHHhc-cC
Q 007769 435 DIEDFVWSSHRPWIPRPMLSMHVRMGDKA-CEMKVVEFEKYMLLADRIRK-----HFPHLNSIWLSTEMQEVVDKSK-LY 507 (590)
Q Consensus 435 ~i~e~V~s~~kp~~p~PiVGVHVRrGDK~-~Ea~~~~~eeYM~~Ve~~~~-----~~p~~rrIFLATDDp~Vi~Eak-kY 507 (590)
.|+ +.+||||||||||||+ +||++|+++|||.+||.+++ ..|..||||||||||+|++|+| +|
T Consensus 357 ~lg----------~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~f~~le~rg~~~~rRiflAsDDp~vv~EAk~kY 426 (580)
T KOG3705|consen 357 SLG----------LDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIWFKVLEKRGKPLERRIFLASDDPTVVPEAKNKY 426 (580)
T ss_pred hCC----------CCCceeeEEEEecccccchhhhhhHHHHHHHHHHHHHHHHHhCCchhheEEEecCCchhchHhhccC
Confidence 333 7889999999999998 69999999999999998875 3567899999999999999999 99
Q ss_pred CCceEEeec-cccccCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcCC-Cccccceecc
Q 007769 508 PHWNFYFTN-VTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTGG-KVMSGYLSVN 585 (590)
Q Consensus 508 p~y~fy~t~-I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRqt~g-ka~a~F~Svd 585 (590)
|+|.|+.++ |.+. +....++++++++++++||++||.+||+||||||||||++||+|||.| |+.+.|+|+|
T Consensus 427 PnYe~igd~eia~~-------A~l~nRYTd~sL~GvIlDIh~LS~~d~LVCTFSSQVCRvaYEimQt~~pDa~~~FhSLD 499 (580)
T KOG3705|consen 427 PNYEVIGDTEIAKT-------AQLNNRYTDASLMGVILDIHILSKVDYLVCTFSSQVCRVAYEIMQTSGPDAGSKFHSLD 499 (580)
T ss_pred CCcEEeccHHHHHH-------hhccccchhhhhhheeeeeeeecccceEEEechHHHHHHHHHHHhccCCCccccccccc
Confidence 999996443 3222 223445588899999999999999999999999999999999999998 9999999999
Q ss_pred CCCCC
Q 007769 586 KDRFW 590 (590)
Q Consensus 586 ~~~~~ 590 (590)
||||+
T Consensus 500 DIYYf 504 (580)
T KOG3705|consen 500 DIYYF 504 (580)
T ss_pred ceeee
Confidence 99984
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.65 E-value=4.4e-16 Score=160.63 Aligned_cols=136 Identities=16% Similarity=0.182 Sum_probs=80.7
Q ss_pred CCccchhhhhhcCCCCC-CCCCeEEEEEcCC---cccccccccCHH-HHHHHHHHHHHh----CCC-CcEEEEeCCchHH
Q 007769 431 NSGSDIEDFVWSSHRPW-IPRPMLSMHVRMG---DKACEMKVVEFE-KYMLLADRIRKH----FPH-LNSIWLSTEMQEV 500 (590)
Q Consensus 431 ~~~~~i~e~V~s~~kp~-~p~PiVGVHVRrG---DK~~Ea~~~~~e-eYM~~Ve~~~~~----~p~-~rrIFLATDDp~V 500 (590)
+.+++|++.|+..+... .++++||||||+| |+..++.++... .+|++|.+..++ .+. ..+||||||+++|
T Consensus 147 kpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDSaeV 226 (321)
T PF05830_consen 147 KPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALAPPKPVRIFLATDSAEV 226 (321)
T ss_dssp -B-HHHHHHHHHHHHHHTTTSEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-HHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCcHHH
Confidence 45678888888766644 6788999999999 666677665555 499888865532 333 4589999999999
Q ss_pred HHHhc-cCCCceEEeecccccc--CCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEE-cCCCcHHHHHHHHHh
Q 007769 501 VDKSK-LYPHWNFYFTNVTRQV--GNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIG-ALGSTWCFLIDGMRN 572 (590)
Q Consensus 501 i~Eak-kYp~y~fy~t~I~r~~--g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVG-TfSSnv~RLi~ELRq 572 (590)
+++++ ++|+.... ++-.+.. |..... .. ..++..++|+|++|||+||++|. |.+|..||++--++-
T Consensus 227 id~fr~~FPdiiti-~k~F~~~~~g~Lhs~----~~-g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~~p 296 (321)
T PF05830_consen 227 IDQFRKKFPDIITI-PKQFPASQAGPLHSA----AV-GIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYASLFVP 296 (321)
T ss_dssp HHHHHHHSTTEE-----------------H----HH-HHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHHHH-S
T ss_pred HHHHHHHCCCeEEc-ccccCCCCCCcCccc----cc-ccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHHHhcc
Confidence 99999 89994332 2211221 222111 11 22356689999999999999995 999999999987763
No 3
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=98.99 E-value=9.5e-10 Score=113.84 Aligned_cols=37 Identities=35% Similarity=0.493 Sum_probs=31.5
Q ss_pred chHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcCCC
Q 007769 540 NYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTGGK 576 (590)
Q Consensus 540 ~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRqt~gk 576 (590)
...++|.++++++|+||||..|+|+..|.+.|...|+
T Consensus 308 ~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~ 344 (351)
T PF10250_consen 308 QLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGK 344 (351)
T ss_dssp --HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSS
T ss_pred chhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCC
Confidence 4568999999999999999999999999999999884
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=98.32 E-value=2.3e-06 Score=88.60 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=65.1
Q ss_pred CCCeEEEEEcCCccccccc-----ccCHHHHHHHHH-HHHHhCCCCcEEEEeCCchHHHHHh-cc-CCCceEEeeccccc
Q 007769 449 PRPMLSMHVRMGDKACEMK-----VVEFEKYMLLAD-RIRKHFPHLNSIWLSTEMQEVVDKS-KL-YPHWNFYFTNVTRQ 520 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~Ea~-----~~~~eeYM~~Ve-~~~~~~p~~rrIFLATDDp~Vi~Ea-kk-Yp~y~fy~t~I~r~ 520 (590)
....|||||||||.+.... .....+|...|- .+..+.+ ...+||.+||++-.++- .. .+...| +
T Consensus 162 ~~~~V~VHIRRGDy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~~~-~~~f~ifSDD~~w~k~~l~~~~~~~~~----~--- 233 (298)
T PF01531_consen 162 NSNSVCVHIRRGDYVSNGNHNWKHGICDKDYYKKAIEYIREKVK-NPKFFIFSDDIEWCKENLKFSNGDVYF----S--- 233 (298)
T ss_pred CCCeEEEEEEchhccccccccccCCCCCHHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHhhcCCcEEE----E---
Confidence 4578999999999875322 233446665554 4444443 44699999999877654 22 222111 1
Q ss_pred cCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 007769 521 VGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 572 (590)
Q Consensus 521 ~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRq 572 (590)
++ .....|+++++.||++|.| .|+.|--+.=|-.
T Consensus 234 -~~----------------~~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~~ 267 (298)
T PF01531_consen 234 -GN----------------NSPYEDLYLMSQCKHFIIS-NSTFSWWAAYLSK 267 (298)
T ss_pred -CC----------------CCHHHHHHHHHhCCcEEEC-CChHHHHHHHHCC
Confidence 11 2357999999999999999 6888887777754
No 5
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=97.75 E-value=0.00085 Score=74.33 Aligned_cols=115 Identities=14% Similarity=0.203 Sum_probs=71.1
Q ss_pred CeEEEEEcCCcccccccccCHHHHHHHHHHHHHh---CC-----------------CCcEEEEeCCchHHHHHhc-cCCC
Q 007769 451 PMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKH---FP-----------------HLNSIWLSTEMQEVVDKSK-LYPH 509 (590)
Q Consensus 451 PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~---~p-----------------~~rrIFLATDDp~Vi~Eak-kYp~ 509 (590)
-.|||+||.-+...+ +++.+++.|-.=..+ .| ..+.|+|++.-+.--++++ .|-+
T Consensus 301 ~riGIQIRvf~~~~~----~~~~~~dqIl~C~~~e~LLP~v~~~~~~~~~~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~ 376 (476)
T PF03254_consen 301 ERIGIQIRVFDPKPG----PFQHVLDQILSCTQQEKLLPEVVDTQEPAASSSSKSQKSKAVLVTSLYSEYYEKLRNMYWE 376 (476)
T ss_pred ceeEEEEEecCCCCC----cchhHHHHHHHHHhhcccCCCccccccccccccCCCCceEEEEEEeCCHHHHHHHHHHHhc
Confidence 369999999886433 456666666531110 11 1357999999999999999 6633
Q ss_pred ceEEeec-cccccCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 007769 510 WNFYFTN-VTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 572 (590)
Q Consensus 510 y~fy~t~-I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRq 572 (590)
..-.-.. |.- -.++...+++. +...--..+++||+|||-||.+|-|--|+.|.++..|--
T Consensus 377 ~~t~tGe~V~V--~QpShe~~Q~~-~~~~h~~kAlaEmyLLS~sD~LVTS~~STFGYVAqgLgG 437 (476)
T PF03254_consen 377 HPTVTGEVVGV--HQPSHEEYQQF-GDNMHNQKALAEMYLLSLSDVLVTSGWSTFGYVAQGLGG 437 (476)
T ss_pred CCCcCCcEEEE--ECCCCcccccc-cccchHHHHHHHHHHHHhccceEecCCCCchhHHHhhcC
Confidence 1110000 000 01222222221 111112457999999999999999999999999988753
No 6
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0022 Score=66.74 Aligned_cols=111 Identities=17% Similarity=0.354 Sum_probs=76.7
Q ss_pred CCCCeEEEEEcCCcc---ccccc-------c----------------------cCHHHHHHHHHHHHHhCCCCcEEEEeC
Q 007769 448 IPRPMLSMHVRMGDK---ACEMK-------V----------------------VEFEKYMLLADRIRKHFPHLNSIWLST 495 (590)
Q Consensus 448 ~p~PiVGVHVRrGDK---~~Ea~-------~----------------------~~~eeYM~~Ve~~~~~~p~~rrIFLAT 495 (590)
+++|+||||.|.|-- ++|+- + -+.++-++.+.+..+...+.+.|||||
T Consensus 228 L~rpfvgiHLRng~DWvraCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAs 307 (386)
T KOG3849|consen 228 LARPFVGIHLRNGADWVRACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVAS 307 (386)
T ss_pred cCcceeEEEeecCchHHHHHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEec
Confidence 678999999999853 23431 1 112333444444444455688999999
Q ss_pred CchHHHHHhc-cCCCceEEeeccccccCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcC
Q 007769 496 EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTG 574 (590)
Q Consensus 496 DDp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRqt~ 574 (590)
|....|+|+. .-..|.+ .+.|+.. ...-+|+.||-.+|+|||.--|..+-++..=|...
T Consensus 308 Ds~hmi~Eln~aL~~~~i---~vh~l~p-----------------dd~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~ 367 (386)
T KOG3849|consen 308 DSDHMIDELNEALKPYEI---EVHRLEP-----------------DDMYTDLAILGQADHFIGNCVSSFSAFVKRERDHA 367 (386)
T ss_pred cchhhhHHHHHhhcccce---eEEecCc-----------------ccchhhhhhhcccchhhhhhHHHHHHHHhhhhccc
Confidence 9999999997 3333344 2333311 12358999999999999999999999999888877
Q ss_pred CCcc
Q 007769 575 GKVM 578 (590)
Q Consensus 575 gka~ 578 (590)
|.-+
T Consensus 368 GrPS 371 (386)
T KOG3849|consen 368 GRPS 371 (386)
T ss_pred CCcc
Confidence 7543
No 7
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=42.17 E-value=1.2e+02 Score=32.05 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=61.1
Q ss_pred CCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC--CchHHHHHhc-cCCCceEEeeccccccCCchH
Q 007769 450 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST--EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTM 526 (590)
Q Consensus 450 ~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT--DDp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s~ 526 (590)
+|+|++|.= --...++-.+.+.|-+.++.+.++. -+|+|.. ||.++.+++. .+++-.- ..+..++
T Consensus 175 ~~~i~i~pg--~s~~~~K~wp~e~~~~l~~~l~~~~---~~Vvl~g~~~e~e~~~~i~~~~~~~~~-------l~~k~sL 242 (334)
T COG0859 175 RPYIVINPG--ASRGSAKRWPLEHYAELAELLIAKG---YQVVLFGGPDEEERAEEIAKGLPNAVI-------LAGKTSL 242 (334)
T ss_pred CCeEEEecc--ccccccCCCCHHHHHHHHHHHHHCC---CEEEEecChHHHHHHHHHHHhcCCccc-------cCCCCCH
Confidence 699999973 1112455688889999999988777 4676654 7888888887 5665111 1123323
Q ss_pred HHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 007769 527 AIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 572 (590)
Q Consensus 527 a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRq 572 (590)
.+. ..+++.||++||+ .|....|+.-+--
T Consensus 243 ~e~----------------~~li~~a~l~I~~-DSg~~HlAaA~~~ 271 (334)
T COG0859 243 EEL----------------AALIAGADLVIGN-DSGPMHLAAALGT 271 (334)
T ss_pred HHH----------------HHHHhcCCEEEcc-CChHHHHHHHcCC
Confidence 221 3456899997775 6777788776644
No 8
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=42.15 E-value=1.2e+02 Score=29.32 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=32.9
Q ss_pred EEEcCCcccccccc---cCHHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhccCC
Q 007769 455 MHVRMGDKACEMKV---VEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYP 508 (590)
Q Consensus 455 VHVRrGDK~~Ea~~---~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp 508 (590)
|..|.|=|..-.+. +.=+-=+.++-+-..+-....+|+|||||..+.+.+++|.
T Consensus 4 IpAR~gS~rlp~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g 60 (217)
T PF02348_consen 4 IPARGGSKRLPGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYG 60 (217)
T ss_dssp EEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTT
T ss_pred EecCCCCCCCCcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcC
Confidence 56677776543321 1111122333333345566778999999999999999887
No 9
>PF15018 InaF-motif: TRP-interacting helix
Probab=42.10 E-value=22 Score=27.18 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=17.9
Q ss_pred hhhhhhhhHHHHHHHHHHhccc
Q 007769 29 CVVGFLCGVCLATLFLAALTSF 50 (590)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~ 50 (590)
=|+|-+||||++.+.|+.--.|
T Consensus 9 tV~~Yl~~VSl~Ai~LsiYY~f 30 (38)
T PF15018_consen 9 TVVAYLFSVSLAAIVLSIYYIF 30 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHhe
Confidence 3789999999999999865443
No 10
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=39.16 E-value=1.1e+02 Score=30.01 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=49.3
Q ss_pred CCCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCCch----HHHHHhc-cCCC--ceEEeeccccc
Q 007769 448 IPRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEMQ----EVVDKSK-LYPH--WNFYFTNVTRQ 520 (590)
Q Consensus 448 ~p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp----~Vi~Eak-kYp~--y~fy~t~I~r~ 520 (590)
.+.|+|+||.=.+. +.+..+.+.|.++++.+.+.. -+|+|..... +..++.. ..++ ..+ .
T Consensus 103 ~~~~~i~i~~~a~~---~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~----~--- 169 (247)
T PF01075_consen 103 KDKPYIGINPGASW---PSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINL----A--- 169 (247)
T ss_dssp TTSSEEEEE---SS---GGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEE----T---
T ss_pred ccCCeEEEeecCCC---ccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEee----c---
Confidence 46899999986555 677788899999998875443 3455543333 3444443 2221 111 1
Q ss_pred cCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHH
Q 007769 521 VGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGM 570 (590)
Q Consensus 521 ~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~EL 570 (590)
+..++. -=+-+++.||++||. .|....|+.-+
T Consensus 170 -~~~~l~----------------e~~ali~~a~~~I~~-Dtg~~HlA~a~ 201 (247)
T PF01075_consen 170 -GKTSLR----------------ELAALISRADLVIGN-DTGPMHLAAAL 201 (247)
T ss_dssp -TTS-HH----------------HHHHHHHTSSEEEEE-SSHHHHHHHHT
T ss_pred -CCCCHH----------------HHHHHHhcCCEEEec-CChHHHHHHHH
Confidence 112221 224688999999986 45555666544
No 11
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=37.57 E-value=1.2e+02 Score=32.06 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=63.7
Q ss_pred CCCCeEEEEEcCCc-ccc--cccc--cCHHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhccCCC---ceEEeecccc
Q 007769 448 IPRPMLSMHVRMGD-KAC--EMKV--VEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYPH---WNFYFTNVTR 519 (590)
Q Consensus 448 ~p~PiVGVHVRrGD-K~~--Ea~~--~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp~---y~fy~t~I~r 519 (590)
.-.|+-|+|-|+=+ |-. +..+ ..++.--+.+ .-.+.+|+-|||.++.=+|.=+.+...-|= .+||.++
T Consensus 110 DlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI-~~ik~NP~drRIimsAwNP~dl~~malpPCH~~~QFyV~~--- 185 (293)
T KOG0673|consen 110 DLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVI-NKIKNNPDDRRIIMSAWNPLDLGKMALPPCHTFCQFYVAN--- 185 (293)
T ss_pred CcccccceeeeecCccccccccccccccHHHHHHHH-HHHhcCCccceeeeeccCccccccccCCccceeeEEEecC---
Confidence 34699999999854 322 3322 2333333333 334678999999999999988877654442 5676555
Q ss_pred ccCCchHHHHhhhhCCCccc-------chHHHHHHHHhcCCceEEcCC
Q 007769 520 QVGNMTMAIYEASLGRETST-------NYPLVNFLMATDSDFFIGALG 560 (590)
Q Consensus 520 ~~g~~s~a~y~~~~g~~~sl-------~~iLvDl~LLseCDyfVGTfS 560 (590)
|..|-.-|+++ .+-++ -+.|+-..++--||+--|.|-
T Consensus 186 --GelScq~YQrS--~dmglGVPFnIASYsLLT~miAhv~gl~pgdfi 229 (293)
T KOG0673|consen 186 --GELSCQMYQRS--GDMGLGVPFNIASYSLLTCMIAHVCGLKPGDFI 229 (293)
T ss_pred --Ceeeehhhhhc--cccccCccchhHHHHHHHHHHHHHhCCCCCceE
Confidence 45555566654 22222 245666677777887555543
No 12
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=36.97 E-value=39 Score=36.86 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=46.3
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHh-----CCCC-cEEEEeCCchHHHHHhccCCCceEEeeccccccC
Q 007769 449 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKH-----FPHL-NSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG 522 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~-----~p~~-rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g 522 (590)
..-.||+=| +..-.|.+..+.|+.. .++. .+.||-||+|..+...+.-|..++..-.|....+
T Consensus 97 ~n~tIGL~v-----------fA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~l~~~r~~~V~~v~~~~~ 165 (337)
T PF03414_consen 97 QNITIGLTV-----------FATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIELGPGRRLKVFEVQEEKR 165 (337)
T ss_dssp CT-EEEEEE-----------EE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS------TTEEEEEEE-SGGSS
T ss_pred cCceEEEEE-----------EecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccccCCCceeEEEEecccCC
Confidence 345788766 4444555555555432 2443 4899999999988777655555554333322211
Q ss_pred --CchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEc-----CCCcHH
Q 007769 523 --NMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGA-----LGSTWC 564 (590)
Q Consensus 523 --~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGT-----fSSnv~ 564 (590)
..+|.+.+. ..-.+.-+++.|+||++|- |...||
T Consensus 166 Wqd~sm~Rm~~--------i~~~i~~~~~~EvDYLFc~dvd~~F~~~vG 206 (337)
T PF03414_consen 166 WQDISMMRMEM--------ISEHIEQHIQHEVDYLFCMDVDMVFQDHVG 206 (337)
T ss_dssp HHHHHHHHHHH--------HHHHHHHCHHHH-SEEEEEESSEEE-S-B-
T ss_pred CccchhHHHHH--------HHHHHHHHHhhcCCEEEEEecceEEecccC
Confidence 234433211 1112344678999999996 555554
No 13
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=32.60 E-value=2.5e+02 Score=29.20 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=54.9
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-CchHHHHHhc-cCCCceEEeeccccccCCchH
Q 007769 449 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTM 526 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT-DDp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s~ 526 (590)
.+|+|+||. .+. ....+.-+.+.|.+.++.+... +.+-|.+.+ +|.+..+++. ..++ . +....|..++
T Consensus 173 ~~~~i~i~p-ga~-~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~-~-----~~~l~g~~sL 242 (334)
T TIGR02195 173 ERPIIAFCP-GAE-FGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPG-E-----LRNLAGETSL 242 (334)
T ss_pred CCCEEEEcC-CCC-CCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCc-c-----cccCCCCCCH
Confidence 478999999 332 1245778888899999887543 344455555 3444445544 2222 1 1001122222
Q ss_pred HHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHH
Q 007769 527 AIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMR 571 (590)
Q Consensus 527 a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELR 571 (590)
. -=.-+++.||.+||+ .|..-.|+.-+.
T Consensus 243 ~----------------el~ali~~a~l~I~~-DSGp~HlAaA~~ 270 (334)
T TIGR02195 243 D----------------EAVDLIALAKAVVTN-DSGLMHVAAALN 270 (334)
T ss_pred H----------------HHHHHHHhCCEEEee-CCHHHHHHHHcC
Confidence 2 224578899999986 556667766553
No 14
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=32.59 E-value=1.3e+02 Score=31.34 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=48.0
Q ss_pred CCCcEEEEeCCchHHHHHhccCCCceEEeeccccccCCchHHHHhhhhCCCcccchHHHHHHHH-hcCCceEEcCCCcHH
Q 007769 486 PHLNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMA-TDSDFFIGALGSTWC 564 (590)
Q Consensus 486 p~~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LL-seCDyfVGTfSSnv~ 564 (590)
+-..+|+|+||++++++++++|.--.| +.|.. .++.- +.+++..++.-+..+ ...|..+++..++.=
T Consensus 42 ~~fd~VviSsDs~~Il~~A~~ygak~~----~~Rp~---~LA~D-----~ast~~~~lh~le~~~~~~~~~~lLq~TsPL 109 (228)
T COG1083 42 KLFDKVVISSDSEEILEEAKKYGAKVF----LKRPK---ELASD-----RASTIDAALHALESFNIDEDTLILLQPTSPL 109 (228)
T ss_pred CccceEEEcCCcHHHHHHHHHhCcccc----ccCCh---hhccC-----chhHHHHHHHHHHHhccccCeeEEeccCccc
Confidence 346799999999999999998854344 44542 11110 122222344333333 344668888888888
Q ss_pred HHHHHHHhc
Q 007769 565 FLIDGMRNT 573 (590)
Q Consensus 565 RLi~ELRqt 573 (590)
|-...|+++
T Consensus 110 l~~~~ik~A 118 (228)
T COG1083 110 LTSLHIKEA 118 (228)
T ss_pred cchhHHHHH
Confidence 888888877
No 15
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=31.98 E-value=1.1e+02 Score=31.95 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=33.3
Q ss_pred CCCcEEEEeCCchHHHHHhccCCCceEEeeccccccCCchHHHHhhhh
Q 007769 486 PHLNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVGNMTMAIYEASL 533 (590)
Q Consensus 486 p~~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g~~s~a~y~~~~ 533 (590)
....+|+|||||+.|.+-.+++.. ....|....++|+-..++-.+.+
T Consensus 41 s~~~rvvVATDde~I~~av~~~G~-~avmT~~~h~SGTdR~~Ev~~~l 87 (247)
T COG1212 41 SGADRVVVATDDERIAEAVQAFGG-EAVMTSKDHQSGTDRLAEVVEKL 87 (247)
T ss_pred cCCCeEEEEcCCHHHHHHHHHhCC-EEEecCCCCCCccHHHHHHHHhc
Confidence 367899999999999999998844 44455555566655555544444
No 16
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.32 E-value=2.1e+02 Score=30.18 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCC-cEEEEeCCchHHHHHhc-----cCCCceEEeeccccccCCchHHHHhhhhCCCcccchHHHHH
Q 007769 473 KYMLLADRIRKHFPHL-NSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNF 546 (590)
Q Consensus 473 eYM~~Ve~~~~~~p~~-rrIFLATDDp~Vi~Eak-----kYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl 546 (590)
.+.|+++.+.+..... ++||+....|.|.+++. +||+-++ +...+|-.+-.+. . .++.-
T Consensus 92 ~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~i----vg~h~GYf~~~e~----------~-~i~~~ 156 (253)
T COG1922 92 AGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKI----VGSHDGYFDPEEE----------E-AIVER 156 (253)
T ss_pred ChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceE----EEecCCCCChhhH----------H-HHHHH
Confidence 4567777777765554 79999999999999986 3897676 3333332211111 1 24444
Q ss_pred HHHhcCCceEEcCCC
Q 007769 547 LMATDSDFFIGALGS 561 (590)
Q Consensus 547 ~LLseCDyfVGTfSS 561 (590)
.-.+..|.+..-+++
T Consensus 157 I~~s~pdil~VgmG~ 171 (253)
T COG1922 157 IAASGPDILLVGMGV 171 (253)
T ss_pred HHhcCCCEEEEeCCC
Confidence 456677766665554
No 17
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.68 E-value=2.1e+02 Score=27.67 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=48.3
Q ss_pred CcEEEEeCCchHHHHHhc-----cCCCceEEeeccccccCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCc
Q 007769 488 LNSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGST 562 (590)
Q Consensus 488 ~rrIFLATDDp~Vi~Eak-----kYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSn 562 (590)
..+|||..+++.+.+++. +||+-++. ....+...-.+ ..-+++..-.+..|+++..+++-
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~iv----g~~~g~f~~~~-----------~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIV----GYHHGYFDEEE-----------EEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEE----EecCCCCChhh-----------HHHHHHHHHHcCCCEEEEECCCC
Confidence 458999999999999655 49997773 22222111111 22366777779999999888886
Q ss_pred H-HHHHHHHHhcCC
Q 007769 563 W-CFLIDGMRNTGG 575 (590)
Q Consensus 563 v-~RLi~ELRqt~g 575 (590)
- =+.++++++..+
T Consensus 113 kQE~~~~~~~~~l~ 126 (172)
T PF03808_consen 113 KQERWIARHRQRLP 126 (172)
T ss_pred HHHHHHHHHHHHCC
Confidence 3 356677776654
No 18
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.58 E-value=2e+02 Score=27.77 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=45.9
Q ss_pred CcEEEEeCCchHHHHHhc-----cCCCceEEeeccccccCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCc
Q 007769 488 LNSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGST 562 (590)
Q Consensus 488 ~rrIFLATDDp~Vi~Eak-----kYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSn 562 (590)
..+|||....+.+++++. +||+-++.. ...+-..... ..-+++..-.+..|+++..+++=
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g----~~~g~~~~~~-----------~~~i~~~I~~~~pdiv~vglG~P 110 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVG----YHHGYFGPEE-----------EEEIIERINASGADILFVGLGAP 110 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEE----ecCCCCChhh-----------HHHHHHHHHHcCCCEEEEECCCC
Confidence 468999999999999854 499977732 1112111111 11166777788899999988875
Q ss_pred HH-HHHHHHHhcC
Q 007769 563 WC-FLIDGMRNTG 574 (590)
Q Consensus 563 v~-RLi~ELRqt~ 574 (590)
-- ..+.++++..
T Consensus 111 kQE~~~~~~~~~l 123 (171)
T cd06533 111 KQELWIARHKDRL 123 (171)
T ss_pred HHHHHHHHHHHHC
Confidence 32 3455555554
No 19
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=27.55 E-value=3.7e+02 Score=27.68 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-C-chHHHHHhc-cCCCceEEeeccccccCCch
Q 007769 449 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-E-MQEVVDKSK-LYPHWNFYFTNVTRQVGNMT 525 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT-D-Dp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s 525 (590)
++|+|++|.-.+. ..+--+.+.|.+.++.+.++ +.+-|++.+ + |....+++. ..++-.+ .|..+
T Consensus 178 ~~~~i~i~~gas~---~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~~~~l--------~g~~s 244 (319)
T TIGR02193 178 PAPYAVLLHATSR---DDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALPGAVV--------LPKMS 244 (319)
T ss_pred CCCEEEEEeCCCc---ccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCCCCee--------cCCCC
Confidence 6899999995542 46778889999999888543 344444423 3 224444444 2333111 12222
Q ss_pred HHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHH
Q 007769 526 MAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGM 570 (590)
Q Consensus 526 ~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~EL 570 (590)
+. -=+.+++.||+|||. .|....|+.-+
T Consensus 245 L~----------------el~ali~~a~l~I~~-DSgp~HlAaa~ 272 (319)
T TIGR02193 245 LA----------------EVAALLAGADAVVGV-DTGLTHLAAAL 272 (319)
T ss_pred HH----------------HHHHHHHcCCEEEeC-CChHHHHHHHc
Confidence 22 225689999999986 55666666644
No 20
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=27.32 E-value=1.1e+02 Score=32.63 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=47.9
Q ss_pred cCHHHHHHHHHHHHHh-----CCC-CcEEEEeCCchHHHHHhccCCCceEEeeccccccC--CchHHHHhhhhCCCcccc
Q 007769 469 VEFEKYMLLADRIRKH-----FPH-LNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMTMAIYEASLGRETSTN 540 (590)
Q Consensus 469 ~~~eeYM~~Ve~~~~~-----~p~-~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g--~~s~a~y~~~~g~~~sl~ 540 (590)
+..-.|....+.|+.. .++ .++-||-||++..+.+.+.=|.-++....+....+ ..+|.+.+. .
T Consensus 41 fatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~Rm~~--------~ 112 (271)
T cd02515 41 FAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVPEVELGPGRRLTVLKIAEESRWQDISMRRMKT--------L 112 (271)
T ss_pred EEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCcccccCCCceeEEEEeccccCCcHHHHHHHHH--------H
Confidence 3344455555554432 244 35899999999988876543443443222321111 234433311 1
Q ss_pred hHHHHHHHHhcCCceEEc-----CCCcHH
Q 007769 541 YPLVNFLMATDSDFFIGA-----LGSTWC 564 (590)
Q Consensus 541 ~iLvDl~LLseCDyfVGT-----fSSnv~ 564 (590)
.-.++-.++.++||+.|- |.++||
T Consensus 113 ~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 113 ADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred HHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 113444578899999986 666666
No 21
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=25.04 E-value=34 Score=39.48 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=30.2
Q ss_pred eEEEEEcCCcccc--cccccCHHHHHHHHHH--------------HH---HhCCCCcEEEEeC
Q 007769 452 MLSMHVRMGDKAC--EMKVVEFEKYMLLADR--------------IR---KHFPHLNSIWLST 495 (590)
Q Consensus 452 iVGVHVRrGDK~~--Ea~~~~~eeYM~~Ve~--------------~~---~~~p~~rrIFLAT 495 (590)
+|-.|-|||||+. -..++.+++|.-...+ .. +.+|.+.+|||+-
T Consensus 535 LI~~HE~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSK 597 (776)
T KOG1123|consen 535 LIKFHERRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSK 597 (776)
T ss_pred HHHHHHhcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEEee
Confidence 5678999999985 5567888888544331 11 2356678899873
No 22
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=24.46 E-value=5.2e+02 Score=27.01 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=57.0
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-C--chHHHHHhc-cCCCceEEeeccccccCCc
Q 007769 449 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-E--MQEVVDKSK-LYPHWNFYFTNVTRQVGNM 524 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT-D--Dp~Vi~Eak-kYp~y~fy~t~I~r~~g~~ 524 (590)
..|+|+||.= + . ...+.-+.+.|.+.++.+.+. +.+-|++.+ + |..+.+++. ..+.=. +....|..
T Consensus 180 ~~~~i~i~p~-a-~-~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~-----~~~l~g~~ 249 (344)
T TIGR02201 180 GQNYIVIQPT-S-R-WFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPR-----VTSLAGKL 249 (344)
T ss_pred CCCEEEEeCC-C-C-ccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCc-----ccccCCCC
Confidence 5689999973 2 1 246778888999999988643 333334333 1 344566665 222100 11112333
Q ss_pred hHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHH
Q 007769 525 TMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMR 571 (590)
Q Consensus 525 s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELR 571 (590)
++.+ =+-+++.||+|||+ .|..-.|+.-+-
T Consensus 250 sL~e----------------l~ali~~a~l~Vs~-DSGp~HlAaA~g 279 (344)
T TIGR02201 250 TLPQ----------------LAALIDHARLFIGV-DSVPMHMAAALG 279 (344)
T ss_pred CHHH----------------HHHHHHhCCEEEec-CCHHHHHHHHcC
Confidence 3322 24578899999998 788888877654
No 23
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=20.72 E-value=1.2e+02 Score=27.86 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=47.4
Q ss_pred CCCCCCCCcccCCcCCChhhHHHHHHHHHhhcCCCCCCCCCCceEEEeeccCCCcchhHHHHHHHHHHHHHHhcCc
Q 007769 201 ISEGVYPPWITGSDEENYPLTRKVQRDIWVHQHPPNCWDPNVRFLVADWERLPGFGIGAQIAGMCGLLAIAINEKR 276 (590)
Q Consensus 201 ~~~~~~p~wi~g~dee~~pLT~~vQr~I~~~QNP~DCs~A~~KfLvc~~~~~cGfGcg~H~v~~C~~L~lA~~tgR 276 (590)
++-|..|.|+..-|..-.-+-..+||-.|..|| |++.+. .-|+|.-.|.++-.++|..+++-++
T Consensus 34 VKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~---------KYi~~K---r~gia~~~~v~~g~~~~~Y~~~Y~~ 97 (104)
T PF10206_consen 34 VKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQH---------KYINVK---RGGIAPFFQVLAGYMVFSYCINYKH 97 (104)
T ss_pred eecchhHHHHhhccCCHHHHHHHHHHHHHHHHH---------hhhcee---cCCcchhHHHHHHHHHHHHHHhhcH
Confidence 455788999966666666788899999999999 888753 4688877777766666666665543
No 24
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=20.17 E-value=1.2e+02 Score=29.74 Aligned_cols=56 Identities=9% Similarity=0.214 Sum_probs=35.1
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhccCCC
Q 007769 449 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYPH 509 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp~ 509 (590)
..=+|||..+.+++.....-+ + | +.+++.+...|..++|||+ +||.+++.++.|.+
T Consensus 79 ~~A~Vgv~~~~~~~~~~~~~i--K-~-~Va~~Vk~~dp~~~~VyVs-aDpd~~~Ri~~~~~ 134 (158)
T TIGR02898 79 NYAYVGVDLTNGLEGSVTDEL--K-E-KVAETVKSTDNRIANVYVS-ADPDTVERIRRYGK 134 (158)
T ss_pred CEEEEEEEcCCCcchhhHHHH--H-H-HHHHHHHhhCCCcceEEEE-cCHHHHHHHHHHHH
Confidence 455999999887664221110 1 1 2233343448999999995 56889998886643
Done!