Query 007769
Match_columns 590
No_of_seqs 166 out of 210
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2de0_X Alpha-(1,6)-fucosyltran 100.0 5.6E-61 1.9E-65 524.1 25.1 314 202-590 110-437 (526)
2 2hhc_A NODZ, nodulation fucosy 99.8 9.8E-20 3.3E-24 185.9 14.3 119 449-574 168-300 (330)
3 4ap5_A GDP-fucose protein O-fu 99.0 2.3E-09 8E-14 113.0 14.5 123 448-584 263-390 (408)
4 3zy2_A Putative GDP-fucose pro 98.8 7.1E-09 2.4E-13 108.4 6.7 107 448-575 209-348 (362)
5 2kr6_A Presenilin-1; protease, 43.2 18 0.00061 34.7 3.8 35 12-46 101-136 (176)
6 1psw_A ADP-heptose LPS heptosy 41.7 96 0.0033 30.3 9.0 96 449-569 179-278 (348)
7 3tov_A Glycosyl transferase fa 41.1 1.1E+02 0.0037 30.9 9.5 92 449-568 184-277 (349)
8 3ioh_A Histo-blood group ABO s 37.6 24 0.00084 36.3 4.0 102 449-564 56-165 (298)
9 1o7q_A N-acetyllactosaminide a 31.7 34 0.0012 35.1 3.9 99 450-564 47-156 (289)
10 2gt1_A Lipopolysaccharide hept 25.2 1.3E+02 0.0044 29.3 6.8 91 448-569 176-270 (326)
No 1
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=100.00 E-value=5.6e-61 Score=524.06 Aligned_cols=314 Identities=21% Similarity=0.334 Sum_probs=252.8
Q ss_pred CCCCCCCcccCCcCCChhhHHHHHHHHHhhcCCCCCCCCCCceEEEeeccCCCcchhHHHHHHHHHHHHHHhcCcEEEEe
Q 007769 202 SEGVYPPWITGSDEENYPLTRKVQRDIWVHQHPPNCWDPNVRFLVADWERLPGFGIGAQIAGMCGLLAIAINEKRVLVTN 281 (590)
Q Consensus 202 ~~~~~p~wi~g~dee~~pLT~~vQr~I~~~QNP~DCs~A~~KfLvc~~~~~cGfGcg~H~v~~C~~L~lA~~tgRtLIld 281 (590)
+.+++..|+ ..+++|||++||++||.||||+||++| |||+|+++..|||||.+|++++|++ +|+++|||||+|
T Consensus 110 ~~~g~~~~r---~~~~~~lt~~vq~~i~~~QnP~~Cs~a--K~Lv~~~~~~~GfGs~lh~l~~~L~--~A~~~~Rtliid 182 (526)
T 2de0_X 110 QTDGAGDWR---EKEAKDLTELVQRRITYLQNPKDCSKA--KKLVCNINKGCGYGCQLHHVVYCFM--IAYGTQRTLILE 182 (526)
T ss_dssp HTTTHHHHH---HHHHHHHHHHHHHHHHHHHCCSCGGGS--CEEEEECCCSSCHHHHHHHHHHHHH--HHHHHTCEEEEE
T ss_pred hhhchhHHH---HHHHHHHHHHHHHHHHHhcCCCcCCCC--CEEEEEecCCCchHHHHHHHHHHHH--HHHhhCCEEEEE
Confidence 456677777 488999999999999999999999999 9999999889999999999999999 999999999999
Q ss_pred CCCCcCCCCCCCCCCCCCccccccCCccccccch----hccccchhhhccCcEEe--ccCCCCcccccCCCCCCCCCCCc
Q 007769 282 YYNRADHDGCKGSSRSSWSCYFLPETSQECRDRA----FELMDNKEALEKGIITT--KDNYSSKQIWAGRAPRVWGDPWS 355 (590)
Q Consensus 282 ~~~~~~h~Gc~g~~~~~WscyF~P~sS~~C~~~a----~e~~~~~~~~~~~Vv~~--~~~~~~~~~f~g~~P~p~~~P~~ 355 (590)
+.+|.+++| +|+|||.| .|++|..+. ..|.......+..||.. .+++.+.++|. |+++|.+
T Consensus 183 d~~w~Y~~g-------~w~~yF~P-~s~~C~~~~~~~~~~w~~~~~~~~~~vV~~~~i~~~~~~~~~~-----~~~~P~~ 249 (526)
T 2de0_X 183 SQNWRYATG-------GWETVFRP-VSETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYL-----PLAVPED 249 (526)
T ss_dssp CTTCSSCTT-------CGGGTBCC-SCSSCCCCCCSCCCBCCCTTGGGGCSEEEECCGGGCSSCCSCC-----TTCEEGG
T ss_pred CCCCCcCCC-------CHHHhhhC-cCccccCCCccccCCCCCcccCCCcceEEeecccccccccccc-----ccccchh
Confidence 999876533 59999999 589998862 22332211123456654 34455555665 6689999
Q ss_pred ccccccccccchhhhcccchhhHHHHHHHHHHhcCChHHHhhHHHHHhhhhhhHHHHHHHHhCCCCCCccccccCCCccc
Q 007769 356 YLQPTTEINGTLIAYHRKMDRRWWRAQAVRYLMRFLTEYTCGLLNVARHAAFGKEAAKMVLTGLPREWPNVEVANNSGSD 435 (590)
Q Consensus 356 ~~~~l~~lhG~p~~~~~~~~~~WW~gQ~~~YLmRp~~e~l~~Lln~~R~~afG~~aa~~v~~~l~~~w~~~~~~~~~~~~ 435 (590)
..+.+..+||+| ++||+||+++|||||++++ ++.+++.+. +
T Consensus 250 ~~~~L~~l~~dp--------~~w~~~q~~~yl~rP~~~i-~~~I~~~~~------------------------------~ 290 (526)
T 2de0_X 250 LADRLVRVHGDP--------AVWWVSQFVKYLIRPQPWL-EKEIEEATK------------------------------K 290 (526)
T ss_dssp GHHHHHHHCSCH--------HHHHHHHHHHHHTCBCHHH-HHHHHHHHH------------------------------H
T ss_pred HHHHHHhccCCc--------HHHHHHHHHHHHcCCCHHH-HHHHHHHHH------------------------------H
Confidence 999999999999 9999999999999999965 455555331 2
Q ss_pred hhhhhhcCCCCCCCCCeEEEEEcCCccc-ccccccCHHHHHHHHHHHHH-----hCCCCcEEEEeCCchHHHHHhc-cCC
Q 007769 436 IEDFVWSSHRPWIPRPMLSMHVRMGDKA-CEMKVVEFEKYMLLADRIRK-----HFPHLNSIWLSTEMQEVVDKSK-LYP 508 (590)
Q Consensus 436 i~e~V~s~~kp~~p~PiVGVHVRrGDK~-~Ea~~~~~eeYM~~Ve~~~~-----~~p~~rrIFLATDDp~Vi~Eak-kYp 508 (590)
++ ++.|+||||||||||+ .|+.++++++||++|++|++ ..+..++||||||||+|+++++ +||
T Consensus 291 l~----------~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~~~~l~~~~~~~~~~ifLATDDp~v~~e~k~~~p 360 (526)
T 2de0_X 291 LG----------FKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDPSLLKEAKTKYP 360 (526)
T ss_dssp HT----------CCSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTTSCCSSCEEEEEESCHHHHHHHHHHCT
T ss_pred hC----------CCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEcCCHHHHHHHHHhCC
Confidence 22 5889999999999995 69999999999999998876 3556789999999999999999 799
Q ss_pred CceEEeeccccccCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcCC-CccccceeccCC
Q 007769 509 HWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTGG-KVMSGYLSVNKD 587 (590)
Q Consensus 509 ~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRqt~g-ka~a~F~Svd~~ 587 (590)
+|+|+.+. ... .+ +. ...+.+.+++.++++|++||++|||||||+||||||++++||++.+ ++...|.|+|++
T Consensus 361 ~~~~~~d~-~~~---~~-a~-~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~~~~~~~~~~~~~SLD~~ 434 (526)
T 2de0_X 361 NYEFISDN-SIS---WS-AG-LHNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQTLHPDASANFHSLDDI 434 (526)
T ss_dssp TSEEECCC-CSS---CS-SG-GGGGTCCTHHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHHTTSSSCCTTCEEESSCC
T ss_pred CCEEecCc-ccc---cc-cC-ccccccHHHHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHhcCcCccccccccCCccc
Confidence 99986322 111 10 00 1222356678999999999999999999999999999999999987 788899999999
Q ss_pred CCC
Q 007769 588 RFW 590 (590)
Q Consensus 588 ~~~ 590 (590)
+.|
T Consensus 435 ~~~ 437 (526)
T 2de0_X 435 YYF 437 (526)
T ss_dssp SCC
T ss_pred ccc
Confidence 865
No 2
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=99.81 E-value=9.8e-20 Score=185.87 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=73.7
Q ss_pred CCCeEEEEEcCCcccc-cccc-------cCHHHHHHHHHHHHHhCC-CCcEEEEeCCchHHHHHhc-cCCCceEEeeccc
Q 007769 449 PRPMLSMHVRMGDKAC-EMKV-------VEFEKYMLLADRIRKHFP-HLNSIWLSTEMQEVVDKSK-LYPHWNFYFTNVT 518 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~-Ea~~-------~~~eeYM~~Ve~~~~~~p-~~rrIFLATDDp~Vi~Eak-kYp~y~fy~t~I~ 518 (590)
..|+|||||||||+.. +... .+++.|...+++...+.+ ..++|||+|||+.++++++ +||+ .+..+...
T Consensus 168 ~~~~VGVHIRrgD~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~vfvaSDd~~~~~~lk~~~~~-~~~~~~~~ 246 (330)
T 2hhc_A 168 GHSIIGVHVRHGNGEDIMEHAPYWADSELALHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGLFPD-VFAVPKRF 246 (330)
T ss_dssp TSEEEEEEECC------------CHHHHHHHHHHHHHHHHHHTSCCSSCEEEEEEESCHHHHHHHHHHSTT-EECCCC--
T ss_pred CCceEEEEEecCCCCcccccCcchHHHhHHHHHHHHHHHHHHhccCcCceEEEEEeCCHHHHHHHHHHcCC-ccccccee
Confidence 4689999999999743 2111 235667777766655554 3579999999999999999 7998 44222211
Q ss_pred c--ccCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceE--EcCCCcHHHHHHHHHhcC
Q 007769 519 R--QVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFI--GALGSTWCFLIDGMRNTG 574 (590)
Q Consensus 519 r--~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfV--GTfSSnv~RLi~ELRqt~ 574 (590)
. ..+.+.. .+. ...+..+++.|++|||.||++| ++ .|+.|..+.=|-...
T Consensus 247 ~~~~~~~~h~-~~~----~~~~~~~~~~Dm~LLS~cd~~I~~~~-~STFs~~aa~l~~~~ 300 (330)
T 2hhc_A 247 QADRAGPLHS-AEM----GIEGGASALIDMYLLARCATVIRFPP-TSAFTRYARLLVPRI 300 (330)
T ss_dssp ---------C-HHH----HHHHHHHHHHHHHHHTTCSEEEEEST-TCGGGHHHHHHCSEE
T ss_pred eccccccccc-Cch----hhccchHHHHHHHHHHcCCeeEECCC-CCCHHHHHHHhCCcc
Confidence 1 1011111 110 1223456899999999999999 55 899999998665443
No 3
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.02 E-value=2.3e-09 Score=113.00 Aligned_cols=123 Identities=20% Similarity=0.346 Sum_probs=88.7
Q ss_pred CCCCeEEEEEcCCcccc--cccccCHHHHHHHHHHHHHhCCCCcEEEEeCC-chHHHHHhc-cCCCceEEeeccccccCC
Q 007769 448 IPRPMLSMHVRMGDKAC--EMKVVEFEKYMLLADRIRKHFPHLNSIWLSTE-MQEVVDKSK-LYPHWNFYFTNVTRQVGN 523 (590)
Q Consensus 448 ~p~PiVGVHVRrGDK~~--Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLATD-Dp~Vi~Eak-kYp~y~fy~t~I~r~~g~ 523 (590)
...|++++|+||||... ++.+-+++...+.+.++.+++ ..+.|||||| ++..+++++ ..+...+. ... .
T Consensus 263 ~~~~y~~~H~Rr~d~~~~~~~~~ps~~~~~~~i~~~~~~~-~~~~VyiATD~~~~~~~~l~~~~~~~~~~-~~~-----~ 335 (408)
T 4ap5_A 263 LGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTH-RLDKVFVATDAVRKEYEELKKLLPEMVRF-EPT-----W 335 (408)
T ss_dssp CCEEEEEEEECCTTTTTTTCSSSCCHHHHHHHHHHHHHHH-TCSCEEEEECCCHHHHHHHHHHCTTEECC-CCC-----H
T ss_pred cCCCccccccccccchhhhhccCCCHHHHHHHHHHHHHhc-CCCEEEEeCCCchhHHHHHHHhCCCcEEe-cCc-----c
Confidence 46789999999999763 667778888888888776665 4568999999 455678887 55653221 110 0
Q ss_pred chHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcCC-Cccccceec
Q 007769 524 MTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTGG-KVMSGYLSV 584 (590)
Q Consensus 524 ~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRqt~g-ka~a~F~Sv 584 (590)
.....+ .++ .-.++|.+|+++|++||||.-|+++..|.+.|...| ....+|-.+
T Consensus 336 ~~~~~~------~d~-~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t~~~~ 390 (408)
T 4ap5_A 336 EELELY------KDG-GVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRF 390 (408)
T ss_dssp HHHHHH------HHH-HHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGTSCBC
T ss_pred hhhhcc------Ccc-hhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCcccccc
Confidence 001111 111 125799999999999999999999999999999998 556666554
No 4
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.75 E-value=7.1e-09 Score=108.45 Aligned_cols=107 Identities=16% Similarity=0.340 Sum_probs=77.9
Q ss_pred CCCCeEEEEEcCC-c--ccccc-----------------------------cccCHHHHHHHHHHHHHhCCCCcEEEEeC
Q 007769 448 IPRPMLSMHVRMG-D--KACEM-----------------------------KVVEFEKYMLLADRIRKHFPHLNSIWLST 495 (590)
Q Consensus 448 ~p~PiVGVHVRrG-D--K~~Ea-----------------------------~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT 495 (590)
+++|+||||.|+| | +++|+ =+=++++-.+.+++..+.. ++++|||||
T Consensus 209 L~rpyVgIHLR~G~DW~~aC~hlk~~~~~~lfaSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~-~lksVFIAT 287 (362)
T 3zy2_A 209 LAKPFVAVHLRNDADWVRVCEHIDTTTNRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSI-GAKSVFVAS 287 (362)
T ss_dssp CCSSEEEEEECCCHHHHHHHHTCCTTTCCCCTTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHH-TCSEEEEEE
T ss_pred cCCCeEEEEEecCCcHHHHHhhhccccCcccccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhc-CCcEEEEec
Confidence 5789999999999 4 12231 1235566666666665543 689999999
Q ss_pred CchHHHHHhcc-CCCceEEeeccccccCCchHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcC
Q 007769 496 EMQEVVDKSKL-YPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTG 574 (590)
Q Consensus 496 DDp~Vi~Eakk-Yp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRqt~ 574 (590)
|...-++|+++ .+...+ ++.+.. . ...++|+.|+++||+||||-.|..+-.|.+.|+..
T Consensus 288 Da~~~~~ELk~~L~~~~v---~vv~~~--p---------------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~ 347 (362)
T 3zy2_A 288 DKDHMIDEINEALKPYEI---EAHRQE--P---------------DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHA 347 (362)
T ss_dssp SSCCCHHHHHHHHGGGTC---CEECCS--S---------------CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhhccCc---eEEEeC--C---------------chhHHHHHHHHhCCEeecCccccccHHHHHHHHhc
Confidence 99888888873 332111 122211 1 14689999999999999999999999999999998
Q ss_pred C
Q 007769 575 G 575 (590)
Q Consensus 575 g 575 (590)
|
T Consensus 348 G 348 (362)
T 3zy2_A 348 G 348 (362)
T ss_dssp S
T ss_pred C
Confidence 8
No 5
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=43.20 E-value=18 Score=34.65 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=26.6
Q ss_pred HHHHHHhhh-CCCcccchhhhhhhhhHHHHHHHHHH
Q 007769 12 VVSQRALQM-GSSFPCQICVVGFLCGVCLATLFLAA 46 (590)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (590)
+|++-|+-+ |.-.+.=.|.|++|-|.|+|-++|+-
T Consensus 101 LVgkAa~~~~~d~~t~~ac~vaIL~GL~~TL~lLa~ 136 (176)
T 2kr6_A 101 LVGKASATASGDWNTTIACFVAILIGLCLTLLLLAI 136 (176)
T ss_dssp HHHHHHHHSCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555544 45556689999999999999999884
No 6
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=41.72 E-value=96 Score=30.26 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=53.8
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC--CchHHHHHhcc-CCC-ceEEeeccccccCCc
Q 007769 449 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST--EMQEVVDKSKL-YPH-WNFYFTNVTRQVGNM 524 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT--DDp~Vi~Eakk-Yp~-y~fy~t~I~r~~g~~ 524 (590)
++|+|++|.-. ...+.+..+.+.|.+.++.+.+. +.+ |+|.. +|....+++.+ .+. ..- ++....|..
T Consensus 179 ~~~~i~l~pga--~~~~~k~wp~~~~~~l~~~L~~~--~~~-vvl~g~~~e~~~~~~i~~~~~~~~~~---~~~~l~g~~ 250 (348)
T 1psw_A 179 ERPMIGFCPGA--EFGPAKRWPHYHYAELAKQLIDE--GYQ-VVLFGSAKDHEAGNEILAALNTEQQA---WCRNLAGET 250 (348)
T ss_dssp SSCEEEEECCC--TTCGGGSCCHHHHHHHHHHHHHT--TCE-EEECCCGGGHHHHHHHHTTSCHHHHT---TEEECTTTS
T ss_pred CCcEEEEECCC--CccccCCCCHHHHHHHHHHHHHC--CCe-EEEEeChhhHHHHHHHHHhhhhcccc---ceEeccCcC
Confidence 57899999833 12256778888999999888665 443 44432 33344444442 221 000 000011222
Q ss_pred hHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHH
Q 007769 525 TMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDG 569 (590)
Q Consensus 525 s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~E 569 (590)
++. -=..+++.||.+||+ .|..-.|+.-
T Consensus 251 sl~----------------e~~ali~~a~l~I~~-Dsg~~HlAaa 278 (348)
T 1psw_A 251 QLD----------------QAVILIAACKAIVTN-DSGLMHVAAA 278 (348)
T ss_dssp CHH----------------HHHHHHHTSSEEEEE-SSHHHHHHHH
T ss_pred CHH----------------HHHHHHHhCCEEEec-CCHHHHHHHH
Confidence 221 123689999999996 5667777554
No 7
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=41.05 E-value=1.1e+02 Score=30.90 Aligned_cols=92 Identities=10% Similarity=0.057 Sum_probs=54.7
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-CchHHHHHhc-cCCCceEEeeccccccCCchH
Q 007769 449 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTM 526 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT-DDp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s~ 526 (590)
..|+|+||...+. ..+..+.+.|.+.++.+.++ +.+-|++.+ +|....+++. ..+.-.+ ...|..++
T Consensus 184 ~~~~i~i~pga~~---~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e~~~~~~i~~~~~~~~~------~l~g~~sl 252 (349)
T 3tov_A 184 TDILIGFNIGSAV---PEKRWPAERFAHVADYFGRL--GYKTVFFGGPMDLEMVQPVVEQMETKPI------VATGKFQL 252 (349)
T ss_dssp TCCEEEEECCCSS---GGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTTHHHHHHHHHTCSSCCE------ECTTCCCH
T ss_pred CCCEEEEeCCCCC---ccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcchHHHHHHHHHhcccccE------EeeCCCCH
Confidence 5789999997654 36678888999999988765 344344333 4455556654 3332001 11122322
Q ss_pred HHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHH
Q 007769 527 AIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLID 568 (590)
Q Consensus 527 a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ 568 (590)
. -=..+++.||++||. .|....|+.
T Consensus 253 ~----------------e~~ali~~a~~~i~~-DsG~~HlAa 277 (349)
T 3tov_A 253 G----------------PLAAAMNRCNLLITN-DSGPMHVGI 277 (349)
T ss_dssp H----------------HHHHHHHTCSEEEEE-SSHHHHHHH
T ss_pred H----------------HHHHHHHhCCEEEEC-CCCHHHHHH
Confidence 2 224578899999986 455556654
No 8
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=37.61 E-value=24 Score=36.32 Aligned_cols=102 Identities=10% Similarity=0.061 Sum_probs=60.6
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCC-cEEEEeCCchHHHHHhccCCCceEEeeccccccC--Cch
Q 007769 449 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHL-NSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMT 525 (590)
Q Consensus 449 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~-rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g--~~s 525 (590)
....||+=|=-+-|-. .-++.+++-||+++. ++. ..-||-||+|..+.....-|..++..-.+.+..+ ..+
T Consensus 56 ~n~tIGl~vfA~GkY~----~fl~~Fl~SAek~Fm--~g~~V~YYVFTD~~~~vP~v~l~~~r~~~V~~v~~~~~Wqd~s 129 (298)
T 3ioh_A 56 QNTTIGLTVFAIKKYV----AFLKLFLETAEKHFM--VGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYKRWQDVS 129 (298)
T ss_dssp TTCEEEEEEEECGGGG----GGHHHHHHHHHHHBS--TTSEEEEEEEESCGGGSCCCCCCTTEEEEEEECCCCSSHHHHH
T ss_pred hCCcEEEEEEEeCcHH----HHHHHHHHhHHHhcc--CCceEEEEEEeCChhhCCccccCCCCeEEEEEeccccCCcccc
Confidence 3568888774444432 245667777776643 443 4899999999988766644555654323322211 234
Q ss_pred HHHHhhhhCCCcccchHHHHHHHHhcCCceEEc-----CCCcHH
Q 007769 526 MAIYEASLGRETSTNYPLVNFLMATDSDFFIGA-----LGSTWC 564 (590)
Q Consensus 526 ~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGT-----fSSnv~ 564 (590)
|.+.+ +..-.+.-.++.|+||++|- |.+.||
T Consensus 130 m~Rm~--------~i~~~~~~~~~~EvDyLfc~dvd~~F~~~vG 165 (298)
T 3ioh_A 130 MRRME--------MISDFCERRFLSEVDYLVCVDVDMEFRDHVG 165 (298)
T ss_dssp HHHHH--------HHHHHHHHTHHHHCSEEEEEESSEEECSCBC
T ss_pred HHHHH--------HHHHHHHHHHhhcCCEEEEecCCCeeccCcc
Confidence 43321 11123445689999999997 666655
No 9
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=31.67 E-value=34 Score=35.14 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCC-CcEEEEeCCchHHHHHhccCCCceEEeeccccccC--CchH
Q 007769 450 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPH-LNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMTM 526 (590)
Q Consensus 450 ~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~-~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g--~~s~ 526 (590)
.-.||+=|=-+-|-.| .-++++++-||+++. ++ ..+-||-||+++.+.+...-|.-++..-.|....+ ..+|
T Consensus 47 n~tIGl~vfa~GkY~~---~fl~~Fl~SAEk~Fm--~g~~v~YYVFTD~~~~~p~v~l~~~r~~~V~~i~~~~~W~d~sm 121 (289)
T 1o7q_A 47 KITVGLTVFAVGRYIE---HYLEEFLTSANKHFM--VGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISM 121 (289)
T ss_dssp TCCEEEEEEECTTHHH---HHHHHHHHHHHHHBS--TTSCEEEEEEESCGGGCCCCCCCTTEEEEEEECCCCSSHHHHHH
T ss_pred CCeEEEEEEEecccHH---HHHHHHHHHHHHhcc--CCCeEEEEEEeCChhhCCccccCCCCeEEEEEeccccCCchhHH
Confidence 3467776622222111 123444444444432 34 34899999999988877656665554333333211 2234
Q ss_pred HHHhhhhCCCcccchHHHH---HHHHhcCCceEEc-----CCCcHH
Q 007769 527 AIYEASLGRETSTNYPLVN---FLMATDSDFFIGA-----LGSTWC 564 (590)
Q Consensus 527 a~y~~~~g~~~sl~~iLvD---l~LLseCDyfVGT-----fSSnv~ 564 (590)
.+.+ .+.+ -.++.++||++|- |.+.||
T Consensus 122 ~Rm~-----------~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG 156 (289)
T 1o7q_A 122 MRMK-----------TIGEHIVAHIQHEVDFLFCMDVDQVFQDKFG 156 (289)
T ss_dssp HHHH-----------HHHHHHHHTHHHHCSEEEEECSSEEECSCBC
T ss_pred HHHH-----------HHHHHHHHHHhhcCCEEEEeeCCcEeeccCC
Confidence 3321 2333 3568899999996 555554
No 10
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=25.23 E-value=1.3e+02 Score=29.27 Aligned_cols=91 Identities=10% Similarity=0.020 Sum_probs=54.5
Q ss_pred CCCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEe-C--CchHHHHHhc-cCCCceEEeeccccccCC
Q 007769 448 IPRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLS-T--EMQEVVDKSK-LYPHWNFYFTNVTRQVGN 523 (590)
Q Consensus 448 ~p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLA-T--DDp~Vi~Eak-kYp~y~fy~t~I~r~~g~ 523 (590)
.+.|+|+||.-.+. ..+.-+.+.|.+.++.+.+. +. +|+|. . +|....+++. ..++.++ .|.
T Consensus 176 ~~~~~i~l~pga~~---~~k~wp~~~~~~l~~~L~~~--~~-~vvl~~g~~~e~~~~~~i~~~~~~~~l--------~g~ 241 (326)
T 2gt1_A 176 DAGEYAVFLHATTR---DDKHWPEEHWRELIGLLADS--GI-RIKLPWGAPHEEERAKRLAEGFAYVEV--------LPK 241 (326)
T ss_dssp TTTSEEEEECCCSS---GGGSCCHHHHHHHHHHTTTT--CC-EEEECCSSHHHHHHHHHHHTTCTTEEE--------CCC
T ss_pred cCCCEEEEEeCCCC---ccccCCHHHHHHHHHHHHHC--CC-cEEEecCCHHHHHHHHHHHhhCCcccc--------cCC
Confidence 35789999985442 35677888898888877432 33 45553 2 3445566665 3454211 122
Q ss_pred chHHHHhhhhCCCcccchHHHHHHHHhcCCceEEcCCCcHHHHHHH
Q 007769 524 MTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDG 569 (590)
Q Consensus 524 ~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~E 569 (590)
.+..+ =..+++.||++||.= |....|+.-
T Consensus 242 ~sl~e----------------l~ali~~a~l~I~~D-SG~~HlAaa 270 (326)
T 2gt1_A 242 MSLEG----------------VARVLAGAKFVVSVD-TGLSHLTAA 270 (326)
T ss_dssp CCHHH----------------HHHHHHTCSEEEEES-SHHHHHHHH
T ss_pred CCHHH----------------HHHHHHhCCEEEecC-CcHHHHHHH
Confidence 33322 236889999999874 555666554
Done!