Query 007769
Match_columns 590
No_of_seqs 166 out of 210
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 10:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007769.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007769hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vh1a_ c.68.1.13 (A:) CMP:2-k 26.0 48 0.0035 28.6 6.0 22 487-508 40-61 (246)
2 d1h7ea_ c.68.1.13 (A:) CMP:2-k 21.4 1.1E+02 0.0079 26.0 7.4 31 478-508 33-63 (245)
3 d1vica_ c.68.1.13 (A:) CMP:2-k 20.1 84 0.0061 26.9 6.4 22 487-508 40-61 (255)
4 d1pswa_ c.87.1.7 (A:) ADP-hept 20.0 93 0.0068 27.7 6.9 98 448-570 178-279 (348)
5 d1o7qa_ c.68.1.9 (A:) alpha-1, 15.3 55 0.004 31.1 4.0 82 469-558 53-143 (287)
6 d1qwja_ c.68.1.13 (A:) CMP acy 15.1 53 0.0038 27.8 3.6 26 486-512 42-67 (228)
7 d1lzia_ c.68.1.9 (A:) Glycosyl 14.7 32 0.0024 32.8 2.1 94 451-558 52-148 (283)
8 d2g8oa1 d.117.1.1 (A:1-264) Th 12.0 51 0.0037 30.7 2.7 73 480-560 117-200 (264)
9 d1tswa_ d.117.1.1 (A:) Thymidy 11.9 44 0.0032 32.1 2.2 99 450-560 143-252 (316)
10 d2ejna1 a.101.1.1 (A:1-72) All 11.5 74 0.0054 24.4 2.9 22 471-505 18-39 (72)
No 1
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}
Probab=26.02 E-value=48 Score=28.60 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.5
Q ss_pred CCcEEEEeCCchHHHHHhccCC
Q 007769 487 HLNSIWLSTEMQEVVDKSKLYP 508 (590)
Q Consensus 487 ~~rrIFLATDDp~Vi~EakkYp 508 (590)
...+|||||||..+.+.+++|.
T Consensus 40 ~i~~iiVsTd~~~i~~~~~~~g 61 (246)
T d1vh1a_ 40 GAERIIVATDHEDVARAVEAAG 61 (246)
T ss_dssp TCSEEEEEESCHHHHHHHHHTT
T ss_pred CCCcEEEEecCccccchhhccc
Confidence 4689999999999999999774
No 2
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}
Probab=21.44 E-value=1.1e+02 Score=26.01 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=23.2
Q ss_pred HHHHHHhCCCCcEEEEeCCchHHHHHhccCC
Q 007769 478 ADRIRKHFPHLNSIWLSTEMQEVVDKSKLYP 508 (590)
Q Consensus 478 Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp 508 (590)
+-+-..+-....+|+|+||+..+.+.++.|-
T Consensus 33 ~i~~a~~~~~~d~Iiv~td~~~i~~~~~~~~ 63 (245)
T d1h7ea_ 33 VYERALQVAGVAEVWVATDDPRVEQAVQAFG 63 (245)
T ss_dssp HHHHHHTCTTCCEEEEEESCHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCeEEEecccccchhhhhhcC
Confidence 3333344556779999999999999998773
No 3
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}
Probab=20.14 E-value=84 Score=26.88 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.2
Q ss_pred CCcEEEEeCCchHHHHHhccCC
Q 007769 487 HLNSIWLSTEMQEVVDKSKLYP 508 (590)
Q Consensus 487 ~~rrIFLATDDp~Vi~EakkYp 508 (590)
...+|+|+|||+++.+.+++|.
T Consensus 40 ~i~~IiVsTd~~~i~~~~~~~~ 61 (255)
T d1vica_ 40 GASRVIIATDNENVADVAKSFG 61 (255)
T ss_dssp TCSEEEEEESCHHHHHHHHHTT
T ss_pred CCCeEEEEcCCcccchhhhhhc
Confidence 3578999999999999998774
No 4
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}
Probab=20.04 E-value=93 Score=27.75 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=54.7
Q ss_pred CCCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEe-CCchHHHHHhcc-CCC-ceEEeeccccccCCc
Q 007769 448 IPRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLS-TEMQEVVDKSKL-YPH-WNFYFTNVTRQVGNM 524 (590)
Q Consensus 448 ~p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLA-TDDp~Vi~Eakk-Yp~-y~fy~t~I~r~~g~~ 524 (590)
-.+|+|++|. |-...+.+.-+.+.|.++++.+.++++ +-|++. .+|....++..+ ... -.. .+....|..
T Consensus 178 ~~~~~i~~~~--~~~~~~~k~wp~~~~~~L~~~l~~~~~--~ivl~g~~~e~~~~~~~~~~~~~~~~~---~~~~l~g~~ 250 (348)
T d1pswa_ 178 SERPMIGFCP--GAEFGPAKRWPHYHYAELAKQLIDEGY--QVVLFGSAKDHEAGNEILAALNTEQQA---WCRNLAGET 250 (348)
T ss_dssp SSSCEEEEEC--CCTTCGGGSCCHHHHHHHHHHHHHTTC--EEEECCCGGGHHHHHHHHTTSCHHHHT---TEEECTTTS
T ss_pred cCCCeEEecc--ccchhhccccchHHHhhhHHHHhhcCC--ccccccccchHHHHHHHHHhhhccccc---ccccccCCc
Confidence 3588999998 334446677899999999998877543 323332 334444544431 110 000 010011222
Q ss_pred hHHHHhhhhCCCcccchHHHH-HHHHhcCCceEEcCCCcHHHHHHHH
Q 007769 525 TMAIYEASLGRETSTNYPLVN-FLMATDSDFFIGALGSTWCFLIDGM 570 (590)
Q Consensus 525 s~a~y~~~~g~~~sl~~iLvD-l~LLseCDyfVGTfSSnv~RLi~EL 570 (590)
+ |.+ +.++..||++||.= |....|+.-+
T Consensus 251 s-----------------l~el~~li~~a~l~I~~D-tg~~HlAaa~ 279 (348)
T d1pswa_ 251 Q-----------------LDQAVILIAACKAIVTND-SGLMHVAAAL 279 (348)
T ss_dssp C-----------------HHHHHHHHHTSSEEEEES-SHHHHHHHHT
T ss_pred c-----------------HHHHHHHHhcceeEeecC-ccHHHHHHHc
Confidence 2 233 46889999999864 4555666554
No 5
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.29 E-value=55 Score=31.11 Aligned_cols=82 Identities=9% Similarity=0.106 Sum_probs=40.9
Q ss_pred cCHHHHHH-HHHHHHHh-----CCC-CcEEEEeCCchHHHHHhccCCCceEEeeccccccC--CchHHHHhhhhCCCccc
Q 007769 469 VEFEKYML-LADRIRKH-----FPH-LNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMTMAIYEASLGRETST 539 (590)
Q Consensus 469 ~~~eeYM~-~Ve~~~~~-----~p~-~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g--~~s~a~y~~~~g~~~sl 539 (590)
+....|.+ .++.|+.. .|+ .+..||-||++.-+.....-|.-++....|....+ .++|.++..
T Consensus 53 fAtgkY~~~Fl~~FleSaEk~Fm~g~~v~yyVFTD~~~~~P~i~l~~~r~~~v~~v~~~~~Wp~iTL~Rm~~-------- 124 (287)
T d1o7qa_ 53 FAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMKT-------- 124 (287)
T ss_dssp EECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCCCCCTTEEEEEEECCCCSSHHHHHHHHHHH--------
T ss_pred EEeChhHHHHHHHHHHHHHHhcCCCCeEEEEEEECCcccCCccccCCccceEEEEccccCCCchhHHHHHHH--------
Confidence 33344543 44444432 244 45899999998665554433433442222221111 233433311
Q ss_pred chHHHHHHHHhcCCceEEc
Q 007769 540 NYPLVNFLMATDSDFFIGA 558 (590)
Q Consensus 540 ~~iLvDl~LLseCDyfVGT 558 (590)
..-.+.=.++.++||++|-
T Consensus 125 i~~~i~~~~~~e~Dylf~~ 143 (287)
T d1o7qa_ 125 IGEHIVAHIQHEVDFLFCM 143 (287)
T ss_dssp HHHHHHHTHHHHCSEEEEE
T ss_pred HHHHHHHhhhccCCeEEEE
Confidence 0112345678899999884
No 6
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.08 E-value=53 Score=27.76 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCchHHHHHhccCCCceE
Q 007769 486 PHLNSIWLSTEMQEVVDKSKLYPHWNF 512 (590)
Q Consensus 486 p~~rrIFLATDDp~Vi~EakkYp~y~f 512 (590)
..+..|+|+|||..+.+.+++|. ..+
T Consensus 42 ~~id~Iivstd~~~i~~~~~~~~-~~~ 67 (228)
T d1qwja_ 42 GVFQSVWVSTDHDEIENVAKQFG-AQV 67 (228)
T ss_dssp TCCSEEEEEESCHHHHHHHHHTT-CEE
T ss_pred CCcceEEEecchhhhhhhhhhcC-ccc
Confidence 45678999999999999999874 344
No 7
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.74 E-value=32 Score=32.75 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=47.1
Q ss_pred CeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCC-CcEEEEeCCchHHHHHhccCCCceEEeecccccc--CCchHH
Q 007769 451 PMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPH-LNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQV--GNMTMA 527 (590)
Q Consensus 451 PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~-~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~--g~~s~a 527 (590)
=.|||=|=-|-|- ..-++.|++-||+++. |+ .++.||-||++.-+.+...-+.-++..-.|.... ..+++.
T Consensus 52 ~tIgl~vfATGkY----~~Fl~~f~eSaek~Fm--pg~~v~yyvFTD~~~~vP~i~l~~~~~v~v~~i~~~~~Wp~iTL~ 125 (283)
T d1lzia_ 52 TTIGLTVFAIKKY----VAFLKLFLETAEKHFM--VGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYKRWQDVSMR 125 (283)
T ss_dssp CEEEEEEEECGGG----GGGHHHHHHHHHHHBS--TTSEEEEEEEESCGGGSCCCCCCTTEEEEEEECC-----------
T ss_pred ceEEEEEEEeChH----HHHHHHHHHHHHHhcC--CCCeeEEEEEECCCccCCccccccCCceEEEeccCCCCCchHHHH
Confidence 4788877444443 2235677777776532 44 3589999999876665553344344221121100 022332
Q ss_pred HHhhhhCCCcccchHHHHHHHHhcCCceEEc
Q 007769 528 IYEASLGRETSTNYPLVNFLMATDSDFFIGA 558 (590)
Q Consensus 528 ~y~~~~g~~~sl~~iLvDl~LLseCDyfVGT 558 (590)
++ ..+.. .+.=.++.++||+++-
T Consensus 126 R~-------~~i~k-~i~~~~~~e~DyLf~~ 148 (283)
T d1lzia_ 126 RM-------EMISD-FCERRFLSEVDYLVCV 148 (283)
T ss_dssp ----------------CHHHHHHHCSEEEEE
T ss_pred HH-------HHHHH-HHHHHhhhcCCEEEEe
Confidence 22 11111 2245688999999883
No 8
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]}
Probab=11.99 E-value=51 Score=30.74 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=47.7
Q ss_pred HHHHhCCCCcEEEEeCCchHHHHHhccCC---CceEEeeccccccCCchHHHHhhhhCCCcccchHHHHH--------HH
Q 007769 480 RIRKHFPHLNSIWLSTEMQEVVDKSKLYP---HWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNF--------LM 548 (590)
Q Consensus 480 ~~~~~~p~~rrIFLATDDp~Vi~EakkYp---~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl--------~L 548 (590)
+-.+..|+-||+.+.+=+|.-+++...+| .++|+. |. |..++.-++| |.+.+.++-.|+ .|
T Consensus 117 ~~Lk~~p~sRR~v~~~wnp~~~~~~~l~PC~~~~qf~v----~~-~~L~~~~~qR---S~D~~lG~p~ni~~~~~L~~~i 188 (264)
T d2g8oa1 117 NQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYV----AD-GKLSCQLYQR---SCDVFLGLPFNIASYALLVHMM 188 (264)
T ss_dssp HHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEE----ET-TEEEEEEEEE---EEETTTHHHHHHHHHHHHHHHH
T ss_pred HHhhcCccceeEEEEccchhhhhhccccccceeeEEEE----cC-CCcEEEEEEc---hhhhhhcCChHHHHHHHHHHHH
Confidence 34467999999999999998888777776 244432 22 4455544544 334444444444 47
Q ss_pred HhcCCceEEcCC
Q 007769 549 ATDSDFFIGALG 560 (590)
Q Consensus 549 LseCDyfVGTfS 560 (590)
+..|++-+|.+.
T Consensus 189 A~~~gl~~G~~~ 200 (264)
T d2g8oa1 189 AQQCDLEVGDFV 200 (264)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHhhccCceEEE
Confidence 889999988854
No 9
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]}
Probab=11.94 E-value=44 Score=32.11 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhccCC---CceEEeeccccccCCchH
Q 007769 450 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYP---HWNFYFTNVTRQVGNMTM 526 (590)
Q Consensus 450 ~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp---~y~fy~t~I~r~~g~~s~ 526 (590)
-|+-|.+.|.-+.-.. ..++..-..+++ .+..|+-||+.+++=+|.-+++....| .++|+. |. |..++
T Consensus 143 g~~YG~qwr~~~~~~~---~~~DQl~~vi~~-Lk~~p~sRR~iis~Wnp~~~~~~~lpPCh~~~qf~v----~~-g~L~~ 213 (316)
T d1tswa_ 143 GLVYGSQWRAWHTSKG---DTIDQLGDVIEQ-IKTHPYSRALIVSAWNPEDVPTMALPPCHTLYQFYV----ND-GKLSL 213 (316)
T ss_dssp CSSHHHHHHCEECSSS---CEECHHHHHHHH-HHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEE----ET-TEEEE
T ss_pred ccccccceeeccccCC---cchhHHHHHHHH-hhcchhccceeeeeCCHHHhccCCCcccchhheeee----cC-CceEE
Confidence 3566666664322111 112333334444 467899999999999999887777676 244432 22 44555
Q ss_pred HHHhhhhCCCcccch--------HHHHHHHHhcCCceEEcCC
Q 007769 527 AIYEASLGRETSTNY--------PLVNFLMATDSDFFIGALG 560 (590)
Q Consensus 527 a~y~~~~g~~~sl~~--------iLvDl~LLseCDyfVGTfS 560 (590)
.-++|+ .+.+.+ .++--+||..|++=+|.+.
T Consensus 214 ~~~qRS---~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~ 252 (316)
T d1tswa_ 214 QLYQRS---ADIFLGVPFNIASYALLTHLVAHECGLEVGEFI 252 (316)
T ss_dssp EEEEEE---EETTTTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEcc---hheeeeCcHHHHHHHHHHHHHHHHHhccCceEE
Confidence 545443 233333 3444467889999988854
No 10
>d2ejna1 a.101.1.1 (A:1-72) Allergen Fel d I-A chain {Cat (Felis catus) [TaxId: 9685]}
Probab=11.52 E-value=74 Score=24.37 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhc
Q 007769 471 FEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSK 505 (590)
Q Consensus 471 ~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~Eak 505 (590)
.++|+++|++| .|||.|++++.
T Consensus 18 ~eeYveyvkqY-------------~~~p~vLEnae 39 (72)
T d2ejna1 18 PDEYVEQVAQY-------------KALPVVLENAR 39 (72)
T ss_dssp HHHHHHHHHHH-------------CCCHHHHHHHH
T ss_pred hHHHHHHHHHh-------------cCCHHHHHhHH
Confidence 58999999999 58899999886
Done!