Query 007770
Match_columns 590
No_of_seqs 408 out of 1740
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 10:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 4.6E-20 1.6E-24 181.6 16.9 201 337-568 21-229 (231)
2 3a01_A Homeodomain-containing 99.7 1.8E-18 6.2E-23 149.7 7.0 78 129-206 12-89 (93)
3 2kt0_A Nanog, homeobox protein 99.7 2.3E-18 8E-23 145.7 5.6 64 130-193 18-81 (84)
4 2dmt_A Homeobox protein BARH-l 99.7 4.5E-18 1.5E-22 143.0 6.9 64 130-193 13-76 (80)
5 2da3_A Alpha-fetoprotein enhan 99.7 3.7E-18 1.2E-22 142.9 5.5 63 131-193 14-76 (80)
6 1nk2_P Homeobox protein VND; h 99.7 1.2E-17 4E-22 139.5 7.2 66 131-196 6-71 (77)
7 2dmq_A LIM/homeobox protein LH 99.7 9.8E-18 3.3E-22 140.6 6.5 66 132-197 5-70 (80)
8 2cue_A Paired box protein PAX6 99.7 1.6E-17 5.3E-22 139.7 7.7 65 132-196 5-69 (80)
9 2dms_A Homeobox protein OTX2; 99.7 9.9E-18 3.4E-22 140.8 4.9 63 132-194 5-67 (80)
10 1wh5_A ZF-HD homeobox family p 99.7 1.6E-17 5.3E-22 140.2 5.9 61 131-191 14-78 (80)
11 2dmu_A Homeobox protein goosec 99.7 1.5E-17 5.3E-22 136.1 5.6 62 132-193 5-66 (70)
12 1fjl_A Paired protein; DNA-bin 99.7 2.1E-17 7.1E-22 139.1 6.4 64 131-194 15-78 (81)
13 2e1o_A Homeobox protein PRH; D 99.7 2.4E-17 8.3E-22 135.0 6.6 62 132-193 5-66 (70)
14 2h1k_A IPF-1, pancreatic and d 99.7 1.6E-17 5.5E-22 133.4 5.3 61 133-193 2-62 (63)
15 2cra_A Homeobox protein HOX-B1 99.7 1.5E-17 5.1E-22 136.3 5.0 62 132-193 5-66 (70)
16 1puf_A HOX-1.7, homeobox prote 99.7 4.9E-17 1.7E-21 135.7 8.2 64 132-195 11-74 (77)
17 2vi6_A Homeobox protein nanog; 99.7 8E-18 2.7E-22 134.7 3.1 60 133-192 2-61 (62)
18 2da2_A Alpha-fetoprotein enhan 99.7 1.4E-17 4.8E-22 136.2 4.4 63 131-193 4-66 (70)
19 1wh7_A ZF-HD homeobox family p 99.7 1.6E-17 5.5E-22 140.3 4.4 60 131-191 14-78 (80)
20 1zq3_P PRD-4, homeotic bicoid 99.7 3.2E-17 1.1E-21 133.7 5.8 63 134-196 2-64 (68)
21 2da1_A Alpha-fetoprotein enhan 99.7 1.5E-17 5E-22 136.1 3.4 62 132-193 5-66 (70)
22 2hdd_A Protein (engrailed home 99.7 2.6E-17 8.7E-22 131.3 4.7 58 134-191 3-60 (61)
23 2djn_A Homeobox protein DLX-5; 99.7 2.5E-17 8.6E-22 134.9 4.7 62 132-193 5-66 (70)
24 1ig7_A Homeotic protein MSX-1; 99.7 4.4E-17 1.5E-21 128.4 5.8 57 135-191 1-57 (58)
25 1yz8_P Pituitary homeobox 2; D 99.7 2.2E-17 7.4E-22 134.6 3.3 63 133-195 2-64 (68)
26 1ahd_P Antennapedia protein mu 99.7 3.1E-17 1.1E-21 133.9 4.2 61 134-194 2-62 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.7 2.8E-17 9.7E-22 134.0 3.8 62 134-195 2-63 (68)
28 1bw5_A ISL-1HD, insulin gene e 99.7 2.9E-17 1E-21 132.9 3.2 61 133-193 2-62 (66)
29 1jgg_A Segmentation protein EV 99.7 6E-17 2E-21 128.7 4.9 58 135-192 2-59 (60)
30 1b8i_A Ultrabithorax, protein 99.7 3.9E-17 1.3E-21 137.7 4.0 62 132-193 18-79 (81)
31 2da4_A Hypothetical protein DK 99.7 5.3E-17 1.8E-21 136.3 4.7 62 132-193 6-71 (80)
32 2l7z_A Homeobox protein HOX-A1 99.7 8.1E-17 2.8E-21 133.1 5.7 62 132-193 5-66 (73)
33 3nar_A ZHX1, zinc fingers and 99.6 5.9E-17 2E-21 140.8 4.8 65 132-196 23-87 (96)
34 3rkq_A Homeobox protein NKX-2. 99.6 9.7E-17 3.3E-21 125.9 5.1 57 134-190 2-58 (58)
35 2r5y_A Homeotic protein sex co 99.6 6E-17 2E-21 138.5 4.1 62 132-193 26-87 (88)
36 2m0c_A Homeobox protein arista 99.6 7.4E-17 2.5E-21 133.3 4.3 64 131-194 6-69 (75)
37 2da5_A Zinc fingers and homeob 99.6 7.8E-17 2.7E-21 134.0 4.4 60 136-195 9-68 (75)
38 1uhs_A HOP, homeodomain only p 99.6 1.8E-16 6.1E-21 130.5 6.2 59 135-193 2-61 (72)
39 2hi3_A Homeodomain-only protei 99.6 1.9E-16 6.4E-21 130.9 6.1 59 135-193 3-62 (73)
40 1akh_A Protein (mating-type pr 99.6 8.6E-17 2.9E-21 128.0 4.0 59 132-190 3-61 (61)
41 3a02_A Homeobox protein arista 99.6 1E-16 3.5E-21 127.4 4.2 57 137-193 2-58 (60)
42 3a03_A T-cell leukemia homeobo 99.6 1.4E-16 4.9E-21 125.0 5.0 54 139-192 2-55 (56)
43 2k40_A Homeobox expressed in E 99.6 7.8E-17 2.7E-21 130.8 3.5 60 135-194 2-61 (67)
44 1b72_A Protein (homeobox prote 99.6 1.7E-16 5.7E-21 138.1 5.3 63 132-194 32-94 (97)
45 2cuf_A FLJ21616 protein; homeo 99.6 2.9E-16 9.8E-21 136.1 6.0 65 131-195 4-83 (95)
46 1x2n_A Homeobox protein pknox1 99.6 2.8E-16 9.5E-21 129.6 5.4 63 132-194 5-70 (73)
47 2ecc_A Homeobox and leucine zi 99.6 2.6E-16 9E-21 131.6 4.9 57 138-194 7-63 (76)
48 2ly9_A Zinc fingers and homeob 99.6 3.6E-16 1.2E-20 129.2 4.9 61 134-194 6-66 (74)
49 2dn0_A Zinc fingers and homeob 99.6 2.3E-16 7.8E-21 131.3 3.0 60 135-194 9-68 (76)
50 2ecb_A Zinc fingers and homeob 99.6 3.2E-16 1.1E-20 134.9 4.0 55 140-194 17-71 (89)
51 2dmn_A Homeobox protein TGIF2L 99.6 6.6E-16 2.3E-20 130.9 5.8 65 132-196 5-72 (83)
52 1puf_B PRE-B-cell leukemia tra 99.6 5.4E-16 1.8E-20 127.9 5.0 61 135-195 2-65 (73)
53 1e3o_C Octamer-binding transcr 99.6 3.1E-16 1.1E-20 148.3 3.1 61 132-192 99-159 (160)
54 1b72_B Protein (PBX1); homeodo 99.6 9.4E-16 3.2E-20 130.4 5.6 61 135-195 2-65 (87)
55 2xsd_C POU domain, class 3, tr 99.6 4E-16 1.4E-20 148.2 2.8 64 131-194 96-159 (164)
56 2dmp_A Zinc fingers and homeob 99.6 9.4E-16 3.2E-20 131.7 4.7 57 138-194 17-73 (89)
57 1k61_A Mating-type protein alp 99.6 1.1E-15 3.9E-20 121.2 4.7 55 137-191 1-58 (60)
58 1au7_A Protein PIT-1, GHF-1; c 99.6 5.1E-16 1.7E-20 144.8 3.0 62 131-192 84-145 (146)
59 2cqx_A LAG1 longevity assuranc 99.6 4.8E-16 1.6E-20 128.6 2.3 58 135-192 9-67 (72)
60 2da6_A Hepatocyte nuclear fact 99.6 2.9E-15 1E-19 131.7 7.2 64 131-194 3-87 (102)
61 1du6_A PBX1, homeobox protein 99.6 6.9E-16 2.4E-20 124.0 3.0 58 134-191 3-63 (64)
62 1le8_B Mating-type protein alp 99.6 9.9E-16 3.4E-20 129.7 3.3 59 135-193 3-64 (83)
63 1mnm_C Protein (MAT alpha-2 tr 99.6 2.2E-15 7.7E-20 128.4 5.4 58 133-190 26-86 (87)
64 2l9r_A Homeobox protein NKX-3. 99.5 7.9E-16 2.7E-20 126.5 1.5 57 139-195 9-65 (69)
65 3d1n_I POU domain, class 6, tr 99.5 3.2E-15 1.1E-19 139.9 5.4 60 132-191 91-150 (151)
66 1wi3_A DNA-binding protein SAT 99.5 5.6E-15 1.9E-19 120.4 5.5 60 131-190 4-64 (71)
67 3nau_A Zinc fingers and homeob 99.5 4.4E-15 1.5E-19 120.7 4.6 53 141-193 11-63 (66)
68 1lfb_A Liver transcription fac 99.5 2.1E-15 7.2E-20 132.2 2.2 64 131-194 6-90 (99)
69 1x2m_A LAG1 longevity assuranc 99.5 4.3E-15 1.5E-19 120.4 3.0 49 143-191 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.5 9.1E-15 3.1E-19 137.6 4.9 61 132-192 94-154 (155)
71 2e19_A Transcription factor 8; 99.5 8.1E-15 2.8E-19 118.6 3.5 52 140-191 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.5 1.2E-14 4.2E-19 137.4 3.3 63 131-193 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 3.2E-14 1.1E-18 115.9 3.2 59 140-198 4-65 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 1.9E-13 6.5E-18 133.1 1.3 62 130-191 111-193 (194)
75 2lk2_A Homeobox protein TGIF1; 99.2 5.2E-12 1.8E-16 108.5 5.2 60 138-197 9-71 (89)
76 3p0l_A Steroidogenic acute reg 99.2 2.4E-10 8.4E-15 111.7 14.4 193 340-566 12-213 (221)
77 2h8r_A Hepatocyte nuclear fact 99.2 8.9E-12 3E-16 123.1 4.1 61 130-190 138-219 (221)
78 2da7_A Zinc finger homeobox pr 99.1 1.9E-11 6.6E-16 100.2 3.8 46 143-188 14-59 (71)
79 1em2_A MLN64 protein; beta bar 99.1 8.9E-10 3E-14 108.1 15.9 200 337-568 20-226 (229)
80 1mh3_A Maltose binding-A1 home 99.1 1.8E-11 6.3E-16 128.3 1.0 56 135-190 366-421 (421)
81 2pso_A STAR-related lipid tran 99.1 7.2E-10 2.5E-14 110.4 12.1 193 343-567 33-227 (237)
82 1jss_A Stard4, cholesterol-reg 98.9 1.6E-08 5.5E-13 99.2 12.6 150 398-567 68-223 (224)
83 1ln1_A PC-TP, phosphatidylchol 98.8 1.3E-08 4.6E-13 98.0 11.2 151 398-568 53-210 (214)
84 2nzz_A Penetratin conjugated G 98.6 4.6E-09 1.6E-13 76.0 -0.7 22 176-197 1-22 (37)
85 3fo5_A Thioesterase, adipose a 98.5 2.4E-07 8.3E-12 93.7 9.5 128 400-541 91-222 (258)
86 3qsz_A STAR-related lipid tran 98.4 1.2E-06 4.1E-11 82.9 12.0 152 398-567 28-179 (189)
87 2e3n_A Lipid-transfer protein 98.2 8.8E-06 3E-10 80.9 11.4 151 399-567 75-246 (255)
88 2d4r_A Hypothetical protein TT 95.6 0.06 2.1E-06 46.3 9.5 140 402-569 7-146 (147)
89 2jn6_A Protein CGL2762, transp 90.3 0.14 4.9E-06 42.9 2.7 43 139-184 4-46 (97)
90 3tl1_A WHIE ORF VI, polyketide 89.6 2.3 8E-05 39.1 10.6 141 401-571 7-150 (159)
91 2ys9_A Homeobox and leucine zi 89.3 0.17 5.8E-06 41.4 2.2 39 146-184 18-56 (70)
92 1t17_A Conserved hypothetical 87.8 1.6 5.4E-05 38.7 8.0 140 401-568 6-145 (148)
93 3tvq_A Multifunctional cyclase 85.2 5.2 0.00018 37.2 10.3 141 401-572 7-151 (169)
94 3tfz_A Cyclase; helix-GRIP, BE 84.6 5.3 0.00018 36.6 10.0 145 401-572 9-164 (172)
95 2wt7_B Transcription factor MA 77.9 8.1 0.00028 33.0 7.8 67 172-259 17-83 (90)
96 2jee_A YIIU; FTSZ, septum, coi 73.4 6.3 0.00022 33.0 5.8 23 241-263 51-77 (81)
97 2j5u_A MREC protein; bacterial 73.3 1.4 4.7E-05 44.1 2.2 16 239-254 44-59 (255)
98 1ci6_A Transcription factor AT 72.7 9.7 0.00033 30.1 6.6 43 192-255 19-61 (63)
99 3p9v_A Uncharacterized protein 72.4 30 0.001 31.2 10.8 140 401-566 11-150 (161)
100 1t2k_D Cyclic-AMP-dependent tr 70.0 12 0.00043 29.1 6.6 41 193-254 19-59 (61)
101 1hjb_A Ccaat/enhancer binding 59.7 17 0.00057 30.8 5.8 19 199-217 39-57 (87)
102 1l8d_A DNA double-strand break 59.0 11 0.00038 32.3 4.9 12 221-232 47-58 (112)
103 3ra3_B P2F; coiled coil domain 58.9 6.7 0.00023 25.7 2.5 18 241-258 3-20 (28)
104 2pcs_A Conserved protein; stru 55.8 1E+02 0.0036 26.8 12.7 137 403-566 9-147 (162)
105 1jnm_A Proto-oncogene C-JUN; B 54.8 18 0.00061 28.3 4.9 24 194-217 20-43 (62)
106 2elh_A CG11849-PA, LD40883P; s 53.3 13 0.00043 30.5 4.0 43 135-182 17-59 (87)
107 3he5_B Synzip2; heterodimeric 51.4 41 0.0014 24.9 5.9 22 239-260 25-46 (52)
108 3a5t_A Transcription factor MA 51.2 3 0.0001 36.7 -0.2 66 172-258 27-92 (107)
109 1hlv_A CENP-B, major centromer 51.1 16 0.00054 31.6 4.5 49 137-188 4-52 (131)
110 2rn7_A IS629 ORFA; helix, all 50.3 0.4 1.4E-05 40.9 -5.9 45 139-183 5-52 (108)
111 1gd2_E Transcription factor PA 49.9 27 0.00093 28.3 5.4 15 244-258 49-63 (70)
112 2glo_A Brinker CG9653-PA; prot 49.5 11 0.00038 28.5 2.9 44 139-183 4-47 (59)
113 1gu4_A CAAT/enhancer binding p 47.6 31 0.001 28.6 5.4 16 201-216 41-56 (78)
114 3s9g_A Protein hexim1; cyclin 47.4 7 0.00024 33.9 1.5 57 194-257 35-91 (104)
115 3hug_A RNA polymerase sigma fa 45.3 21 0.00072 29.2 4.2 49 140-193 37-85 (92)
116 2wt7_A Proto-oncogene protein 44.1 63 0.0022 25.2 6.6 27 193-219 20-46 (63)
117 3m91_A Proteasome-associated A 43.6 36 0.0012 26.0 4.8 38 200-258 13-50 (51)
118 1jko_C HIN recombinase, DNA-in 42.4 10 0.00036 26.6 1.7 42 141-187 6-47 (52)
119 3m48_A General control protein 40.8 24 0.00083 24.6 3.1 21 241-261 10-30 (33)
120 2le1_A Uncharacterized protein 38.5 1.8E+02 0.006 25.2 9.5 35 403-441 8-42 (151)
121 1s7o_A Hypothetical UPF0122 pr 38.0 54 0.0018 28.3 5.8 49 140-193 22-70 (113)
122 3m9b_A Proteasome-associated A 37.1 36 0.0012 34.1 5.0 20 240-259 77-96 (251)
123 1tc3_C Protein (TC3 transposas 36.4 25 0.00086 24.1 2.9 40 140-184 5-44 (51)
124 1gd2_E Transcription factor PA 35.9 58 0.002 26.4 5.2 16 240-255 52-67 (70)
125 1xsv_A Hypothetical UPF0122 pr 35.5 63 0.0022 27.7 5.9 50 140-194 25-74 (113)
126 2o8x_A Probable RNA polymerase 32.6 27 0.00092 26.4 2.7 46 140-190 15-60 (70)
127 1hjb_A Ccaat/enhancer binding 32.3 1.5E+02 0.005 25.0 7.3 17 242-258 47-63 (87)
128 2dgc_A Protein (GCN4); basic d 31.8 59 0.002 25.6 4.6 41 185-256 22-62 (63)
129 3mzy_A RNA polymerase sigma-H 31.3 49 0.0017 28.6 4.5 47 140-192 109-155 (164)
130 3p51_A Uncharacterized protein 29.8 1.5E+02 0.005 26.9 7.7 135 402-567 7-142 (160)
131 3lph_A Protein REV; helix-loop 28.2 34 0.0011 28.0 2.5 37 146-196 18-54 (72)
132 1uii_A Geminin; human, DNA rep 27.6 1.2E+02 0.0042 25.3 5.9 20 243-262 58-77 (83)
133 1p4w_A RCSB; solution structur 27.3 54 0.0019 27.6 3.9 44 139-188 33-76 (99)
134 3s9g_A Protein hexim1; cyclin 26.5 72 0.0025 27.6 4.4 23 195-217 64-86 (104)
135 3oja_A Leucine-rich immune mol 25.4 1.4E+02 0.0047 31.6 7.5 22 238-259 442-463 (487)
136 2rgt_A Fusion of LIM/homeobox 25.1 2.3 7.9E-05 39.3 -5.6 30 132-161 134-163 (169)
137 1go4_E MAD1 (mitotic arrest de 24.9 2.3E+02 0.0079 24.5 7.4 25 239-263 69-93 (100)
138 2j5u_A MREC protein; bacterial 24.7 48 0.0016 32.9 3.6 19 243-261 41-59 (255)
139 1deb_A APC protein, adenomatou 24.6 65 0.0022 24.6 3.4 21 200-220 7-27 (54)
140 2yy0_A C-MYC-binding protein; 24.3 99 0.0034 23.6 4.5 34 203-264 19-52 (53)
141 2dfs_A Myosin-5A; myosin-V, in 24.2 55 0.0019 39.1 4.5 56 194-259 989-1044(1080)
142 2x7l_M HIV REV; nuclear export 24.0 22 0.00076 31.4 0.8 36 146-195 15-50 (115)
143 1gu4_A CAAT/enhancer binding p 23.9 2.6E+02 0.009 22.9 7.3 18 242-259 47-64 (78)
144 2oxj_A Hybrid alpha/beta pepti 23.8 69 0.0023 22.5 3.1 21 241-261 11-31 (34)
145 1je8_A Nitrate/nitrite respons 23.7 51 0.0017 26.4 2.9 46 139-190 20-65 (82)
146 3ulq_B Transcriptional regulat 23.2 68 0.0023 26.4 3.7 42 137-184 26-67 (90)
147 3c57_A Two component transcrip 23.0 68 0.0023 26.4 3.7 44 139-188 26-69 (95)
148 1fse_A GERE; helix-turn-helix 22.5 79 0.0027 23.9 3.8 45 139-189 10-54 (74)
149 2ns9_A Hypothetical protein AP 21.0 3.8E+02 0.013 22.7 9.5 26 404-429 20-45 (157)
150 2yf2_A C4B binding protein; im 20.7 24 0.00082 27.4 0.3 35 225-259 21-55 (65)
151 2oa5_A Hypothetical protein BQ 20.4 1.5E+02 0.0052 26.0 5.4 25 197-221 9-33 (110)
152 3a2a_A Voltage-gated hydrogen 20.2 1.8E+02 0.006 22.6 5.0 24 240-263 27-50 (58)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=181.61 Aligned_cols=201 Identities=15% Similarity=0.191 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhhHHHHh
Q 007770 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (590)
Q Consensus 337 k~~~~elA~~Am~El~~ma~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (590)
+..++++|++||+||+++++. +..|....+.. +.++|.+.. .+....+-|..++|.+++.+|++.|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD-TAGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CSSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 889999999999999999975 47898654321 223443322 1223478899999999999999999
Q ss_pred cC-----hhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhh-hhhhccccccccceeeEEeeeeeecCCeEEEEEEe
Q 007770 417 MD-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMH-AELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVS 490 (590)
Q Consensus 417 mD-----~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~-aElqvlSPLVP~Re~~flRyckq~~~g~WaVvDVS 490 (590)
|+ ..+|-..|. .+.+++.|+. +. .++| ....+++++|+.|||.++|||++.++|.|+|+..|
T Consensus 87 ~~~d~~~r~~Wd~~~~----~~~vle~i~~------~~--~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S 154 (231)
T 2r55_A 87 KPAVGGLRVKWDENVT----GFEIIQSITD------TL--CVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH 154 (231)
T ss_dssp CC--CCSHHHHCTTCS----EEEEEEECSS------SE--EEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HhhCcchhhhhccccc----eeEEEEEcCC------CE--EEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence 77 789987754 5788888862 11 2333 22234567999999999999999999999999999
Q ss_pred ccCccCCCCCCCccceeecCCCceeeecC--CCceeEEEEEeeeecCccccchhhhhhccchhHhHHHHHHHHHHHHHHH
Q 007770 491 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (590)
Q Consensus 491 ~d~~~~~~~~~~~~~~rr~PSGclIqd~~--nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RWlatLqRqCErl 568 (590)
++.-. .+..+.++|+..++|||+|++++ +|.|+|||+.|++..-+ ++ +.|+++.++.++-.|++.|+++|+.+
T Consensus 155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 98432 22223489999999999999998 78999999999988754 55 67899999999999999999999864
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=1.8e-18 Score=149.69 Aligned_cols=78 Identities=32% Similarity=0.420 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHhhhhHHHHhhH
Q 007770 129 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (590)
Q Consensus 129 ~~~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~ 206 (590)
...+++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..+.+...+++.+.
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 334567888999999999999999999999999999999999999999999999999999999888777666665554
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-18 Score=145.65 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 130 ~~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
...++||.|+.||..|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999999754
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-18 Score=142.95 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 130 ~~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
..++.+|.|++||.+|+..||..|..++||+..+|.+||.+|+|+++||++||||||+|+|+..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3456678899999999999999999999999999999999999999999999999999999753
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-18 Score=142.93 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
..++||.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 356678899999999999999999999999999999999999999999999999999999754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.71 E-value=1.2e-17 Score=139.47 Aligned_cols=66 Identities=30% Similarity=0.385 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHh
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 196 (590)
.++++|.|++||..|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 345677889999999999999999999999999999999999999999999999999999876544
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.8e-18 Score=140.57 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHhh
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e 197 (590)
.++||.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|++..+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999999999999999999999999999998765443
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.6e-17 Score=139.67 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHh
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 196 (590)
.+.+|.|++||.+|+..||..|..++||+..+|.+||.+|+|+++||++||||||+|+|++.+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45677889999999999999999999999999999999999999999999999999999876543
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=9.9e-18 Score=140.78 Aligned_cols=63 Identities=29% Similarity=0.496 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
.++||.|++||.+|+..||..|..++||+..+|.+||.+|+|+++||++||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 456788899999999999999999999999999999999999999999999999999998654
No 10
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=1.6e-17 Score=140.19 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc----CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKE----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 191 (590)
.+++||.|+.||.+|+..||..|+. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3466788999999999999999999 999999999999999999999999999999999874
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=136.08 Aligned_cols=62 Identities=29% Similarity=0.556 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.+.+|.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34577889999999999999999999999999999999999999999999999999999754
No 12
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.69 E-value=2.1e-17 Score=139.13 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
.++++|.|++||..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4566788899999999999999999999999999999999999999999999999999998653
No 13
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.4e-17 Score=135.01 Aligned_cols=62 Identities=35% Similarity=0.420 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.+.+++|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34567788999999999999999999999999999999999999999999999999999864
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.69 E-value=1.6e-17 Score=133.38 Aligned_cols=61 Identities=34% Similarity=0.444 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 133 kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
++||.|++||..|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3577889999999999999999999999999999999999999999999999999999753
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.5e-17 Score=136.28 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.+.||+|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45677889999999999999999999999999999999999999999999999999999754
No 16
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.68 E-value=4.9e-17 Score=135.66 Aligned_cols=64 Identities=36% Similarity=0.432 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 195 (590)
++.++.|++||..|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+..+.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788999999999999999999999999999999999999999999999999999987654
No 17
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.68 E-value=8e-18 Score=134.66 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHH
Q 007770 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (590)
Q Consensus 133 kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 192 (590)
+++|.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457788999999999999999999999999999999999999999999999999999975
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=136.19 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.+++++.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 345677889999999999999999999999999999999999999999999999999999754
No 19
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=1.6e-17 Score=140.26 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKE-----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 191 (590)
..++||.|+.||.+|+..|| .|.. ++||+..+|.+||.+|+|+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999874
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.67 E-value=3.2e-17 Score=133.70 Aligned_cols=63 Identities=37% Similarity=0.520 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHh
Q 007770 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (590)
Q Consensus 134 kKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 196 (590)
+|+.|+.||.+|+..||..|..++||+..++.+||..|||+++||++||||||+|+|++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467789999999999999999999999999999999999999999999999999999877654
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-17 Score=136.11 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.++++.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678889999999999999999999999999999999999999999999999999999754
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.67 E-value=2.6e-17 Score=131.29 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHH
Q 007770 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (590)
Q Consensus 134 kKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 191 (590)
+||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778899999999999999999999999999999999999999999999999999986
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-17 Score=134.92 Aligned_cols=62 Identities=29% Similarity=0.409 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.+.|+.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 45678889999999999999999999999999999999999999999999999999999743
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=4.4e-17 Score=128.41 Aligned_cols=57 Identities=37% Similarity=0.511 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHH
Q 007770 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 191 (590)
||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467889999999999999999999999999999999999999999999999999986
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.66 E-value=2.2e-17 Score=134.57 Aligned_cols=63 Identities=30% Similarity=0.516 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHH
Q 007770 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (590)
Q Consensus 133 kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 195 (590)
++||.|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|++++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 467888999999999999999999999999999999999999999999999999999986643
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.66 E-value=3.1e-17 Score=133.85 Aligned_cols=61 Identities=36% Similarity=0.517 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 134 kKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
+||.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678899999999999999999999999999999999999999999999999999998654
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.66 E-value=2.8e-17 Score=133.98 Aligned_cols=62 Identities=37% Similarity=0.500 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHH
Q 007770 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (590)
Q Consensus 134 kKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 195 (590)
+||.|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|++.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 56788999999999999999999999999999999999999999999999999999986543
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.65 E-value=2.9e-17 Score=132.93 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 133 kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
++||.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4577889999999999999999999999999999999999999999999999999998743
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=6e-17 Score=128.73 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHH
Q 007770 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 192 (590)
||.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678899999999999999999999999999999999999999999999999999974
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.65 E-value=3.9e-17 Score=137.71 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
+++||.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35677889999999999999999999999999999999999999999999999999999754
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.3e-17 Score=136.29 Aligned_cols=62 Identities=11% Similarity=0.207 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcC----CCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKEC----PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~----~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.++||.|+.||.+|+..||..|..+ +||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4567888999999999999999999 9999999999999999999999999999999999743
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.65 E-value=8.1e-17 Score=133.13 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.+.+|+|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999999754
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.65 E-value=5.9e-17 Score=140.79 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHh
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 196 (590)
...+++|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+++.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 34567789999999999999999999999999999999999999999999999999999865443
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.64 E-value=9.7e-17 Score=125.94 Aligned_cols=57 Identities=39% Similarity=0.493 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHH
Q 007770 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (590)
Q Consensus 134 kKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (590)
++|.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 466788999999999999999999999999999999999999999999999999986
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.64 E-value=6e-17 Score=138.45 Aligned_cols=62 Identities=34% Similarity=0.476 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
++.||.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 34677889999999999999999999999999999999999999999999999999999753
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=7.4e-17 Score=133.25 Aligned_cols=64 Identities=30% Similarity=0.508 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
.+++++.|++||.+|+..||..|..++||+..++.+||..|||+++||++||||||+|+|++..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 3456778899999999999999999999999999999999999999999999999999997543
No 37
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.8e-17 Score=133.98 Aligned_cols=60 Identities=25% Similarity=0.557 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHH
Q 007770 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (590)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 195 (590)
++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 345679999999999999999999999999999999999999999999999999986543
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=1.8e-16 Score=130.54 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356788999999999999996 99999999999999999999999999999999999865
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=1.9e-16 Score=130.86 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
+++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 466789999999999999995 99999999999999999999999999999999999865
No 40
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.63 E-value=8.6e-17 Score=128.01 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (590)
.++++.|++||.+|+..||..|..++||+..++.+||.++||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45677889999999999999999999999999999999999999999999999999976
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.63 E-value=1e-16 Score=127.39 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 367899999999999999999999999999999999999999999999999999864
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=125.03 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHH
Q 007770 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (590)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 192 (590)
+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.63 E-value=7.8e-17 Score=130.80 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
||.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 677889999999999999999999999999999999999999999999999999997554
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.7e-16 Score=138.11 Aligned_cols=63 Identities=32% Similarity=0.416 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
.+.++.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 355777899999999999999999999999999999999999999999999999999998754
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=2.9e-16 Score=136.13 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcC---------------CCccchhcccchhhhHHHHHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------LETRQVKFWFQNRRTQMKTQLER 195 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------Ls~rQVkvWFQNRRaK~Kr~~~r 195 (590)
.+++||.|+.||..|+.+||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|+++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 346688899999999999999999999999999999999999 99999999999999999987653
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=2.8e-16 Score=129.60 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
++.|++|++|+.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 456778889999999999999977 999999999999999999999999999999999997543
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2.6e-16 Score=131.59 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
|.+||.+|+.+||..|..++||+..+|.+||+.+||+++||++||||||+|+|+.+.
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 346999999999999999999999999999999999999999999999999997654
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-16 Score=129.17 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 134 kKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
.++.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+++.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4667889999999999999999999999999999999999999999999999999997553
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-16 Score=131.32 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
++.|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+|++..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 334788999999999999999999999999999999999999999999999999997543
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=3.2e-16 Score=134.92 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
+||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999997543
No 51
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.60 E-value=6.6e-16 Score=130.90 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHh
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 196 (590)
.++||+|++|+.+|+..||..|.+ ++||+..+|.+||.++||+++||++||||||+|+|+...++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 456778889999999999999987 59999999999999999999999999999999999765443
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.59 E-value=5.4e-16 Score=127.90 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHH
Q 007770 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 195 (590)
||+|++||.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5678899999999999999 999999999999999999999999999999999999986554
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.59 E-value=3.1e-16 Score=148.25 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 192 (590)
+++||+|++||..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678889999999999999999999999999999999999999999999999999999974
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.58 E-value=9.4e-16 Score=130.43 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHH
Q 007770 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 195 (590)
||+|++|+.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5678899999999999999 899999999999999999999999999999999999986544
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.57 E-value=4e-16 Score=148.20 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
.+++||+|++||..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+.+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4566788999999999999999999999999999999999999999999999999999998654
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.4e-16 Score=131.68 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
+++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 345999999999999999999999999999999999999999999999999986543
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.57 E-value=1.1e-15 Score=121.24 Aligned_cols=55 Identities=40% Similarity=0.507 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHH
Q 007770 137 RYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (590)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 191 (590)
++++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3578999999999999999 999999999999999999999999999999999986
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.57 E-value=5.1e-16 Score=144.80 Aligned_cols=62 Identities=29% Similarity=0.479 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 192 (590)
.+++||+|++||..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667789999999999999999999999999999999999999999999999999999974
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=4.8e-16 Score=128.57 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHhh-hcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHH
Q 007770 135 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 192 (590)
.+.+.+++.+|+..||..| ..++||+..+|.+||.+|||+++||++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3445578899999999999 999999999999999999999999999999999999953
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-15 Score=131.72 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHc---------------------CCCccchhcccchhhhHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL---------------------CLETRQVKFWFQNRRTQM 189 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L---------------------gLs~rQVkvWFQNRRaK~ 189 (590)
.+++||.|+.|++.|+.+||..|..++||+..+|++||.+| .|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35678889999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHH
Q 007770 190 KTQLE 194 (590)
Q Consensus 190 Kr~~~ 194 (590)
|++++
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 98654
No 61
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=6.9e-16 Score=124.00 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHH
Q 007770 134 RKKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (590)
Q Consensus 134 kKr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 191 (590)
.+++|++|+.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46677899999999999999 99999999999999999999999999999999999985
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=9.9e-16 Score=129.69 Aligned_cols=59 Identities=36% Similarity=0.419 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 135 KKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
++++++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 455677999999999999999 99999999999999999999999999999999999754
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.55 E-value=2.2e-15 Score=128.40 Aligned_cols=58 Identities=36% Similarity=0.467 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHH
Q 007770 133 PRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (590)
Q Consensus 133 kkKr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (590)
+++|+|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45666889999999999999999 99999999999999999999999999999999987
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=7.9e-16 Score=126.50 Aligned_cols=57 Identities=35% Similarity=0.454 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHH
Q 007770 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (590)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 195 (590)
..+|..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+++..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 358899999999999999999999999999999999999999999999999976543
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=139.89 Aligned_cols=60 Identities=33% Similarity=0.648 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 191 (590)
+++||+|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 466778899999999999999999999999999999999999999999999999999985
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=5.6e-15 Score=120.42 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (590)
.+++||.|+.|+.+|+..|+..|+. ++||+...|+.||.++||++++|++||||||.-.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467888999999999999999999 99999999999999999999999999999997544
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.53 E-value=4.4e-15 Score=120.70 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 141 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
-|.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 37899999999999999999999999999999999999999999999999754
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.52 E-value=2.1e-15 Score=132.21 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHH------------------cC---CCccchhcccchhhhHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKR------------------LC---LETRQVKFWFQNRRTQM 189 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~------------------Lg---Ls~rQVkvWFQNRRaK~ 189 (590)
.+++||.|+.||..|+..||..|..++||+..+|++||.. || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3566778899999999999999999999999999999999 88 99999999999999998
Q ss_pred HHHHH
Q 007770 190 KTQLE 194 (590)
Q Consensus 190 Kr~~~ 194 (590)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 86553
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=4.3e-15 Score=120.42 Aligned_cols=49 Identities=41% Similarity=0.596 Sum_probs=46.2
Q ss_pred HHHHHHHHHhh-hcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHH
Q 007770 143 PQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (590)
Q Consensus 143 ~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 191 (590)
+.|+.+||..| ..++||+..+|.+||++|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 67999999999999999999999999999999999985
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.50 E-value=9.1e-15 Score=137.56 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 192 (590)
+++||+|++||..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567778999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.1e-15 Score=118.61 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHH
Q 007770 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (590)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 191 (590)
.++.+|+..||..|..++||+..+|.+||++|||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4578999999999999999999999999999999999999999999998774
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.47 E-value=1.2e-14 Score=137.43 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 131 ~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.+++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 446678899999999999999999999999999999999999999999999999999998643
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=3.2e-14 Score=115.91 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHhhh
Q 007770 140 RHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHEN 198 (590)
Q Consensus 140 rfT~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~ 198 (590)
+|+.+|+..|+..|. .++||+..+|.+||.++||+++||++||||||+|+|+...++++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 699999999999999 99999999999999999999999999999999999987655543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.33 E-value=1.9e-13 Score=133.12 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcC---------------------CCccchhcccchhhhH
Q 007770 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (590)
Q Consensus 130 ~~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRaK 188 (590)
..+++||.|+.|++.|+..||+.|..++||+..+|.+||..|+ |++.||++||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3456678889999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q 007770 189 MKT 191 (590)
Q Consensus 189 ~Kr 191 (590)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 875
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.24 E-value=5.2e-12 Score=108.50 Aligned_cols=60 Identities=28% Similarity=0.402 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHhh
Q 007770 138 YHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (590)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e 197 (590)
.+.|+.+++..|+..|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...+.+
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 356899999999999987 999999999999999999999999999999999998765543
No 76
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.17 E-value=2.4e-10 Score=111.65 Aligned_cols=193 Identities=15% Similarity=0.214 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeecc-C-CCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhhHHHHh-
Q 007770 340 FLELALAAMDELVKMAQTDEPLWIRSF-E-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL- 416 (590)
Q Consensus 340 ~~elA~~Am~El~~ma~~~eplWi~~~-~-~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l- 416 (590)
...+|++||++++++.+ ++.-|.... + .| ..+ |.+.++.. | -.=|..++|-..+..+.+.|
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g--v~v----y~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQDNG--DKV----MSKVVPDV------G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS--CEE----EEEECSSS------C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC--cEE----EEEEcCCC------c---eEEEEEEEEcCCHHHHHHHHH
Confidence 57899999999999976 345797762 3 33 222 33333211 2 23488899999999999998
Q ss_pred cCh---hhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhh-hccccccccceeeEEeeeeeecCCeEEEEEEecc
Q 007770 417 MDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAEL-QVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSID 492 (590)
Q Consensus 417 mD~---~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aEl-qvlSPLVP~Re~~flRyckq~~~g~WaVvDVS~d 492 (590)
+|. .+|-.. +..+..++.|+.. + .+.|.-. ..+.++|..|||.++||.++. +|.++|+-.|++
T Consensus 76 ~d~~~r~~Wd~~----~~~~~vle~~~~~-------t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~ 142 (221)
T 3p0l_A 76 ERMEAMGEWNPN----VKEIKVLQKIGKD-------T-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATD 142 (221)
T ss_dssp TTGGGTTTSCTT----CSEEEEEEECSSS-------E-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECC
T ss_pred hccchhhhcCcc----hheEEEEEecCCC-------e-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEecc
Confidence 464 567665 2345666665532 2 3555322 123468999999999999986 688999999987
Q ss_pred CccCCCCCCCccceeecCCCceeeecCCC--ceeEEEEEeeeecCccccchhhhhhccchhHhHHHHHHHHHHHHH
Q 007770 493 TIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (590)
Q Consensus 493 ~~~~~~~~~~~~~~rr~PSGclIqd~~nG--~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RWlatLqRqCE 566 (590)
.-. .+..+.++|...+++|++|+++++| .|+|||+-|++.--+ ++ +-+++..+.-+.-.++..|+++|+
T Consensus 143 ~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 143 FGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 1212348999999999999999988 999999999987644 44 457888888888889999999998
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.17 E-value=8.9e-12 Score=123.15 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcC---------------------CCccchhcccchhhhH
Q 007770 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (590)
Q Consensus 130 ~~~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRaK 188 (590)
..+++||.|+.|++.|+.+||..|..++||+..+|++||+.++ |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4456677888899999999999999999999999999999988 8999999999999987
Q ss_pred HH
Q 007770 189 MK 190 (590)
Q Consensus 189 ~K 190 (590)
..
T Consensus 218 ~~ 219 (221)
T 2h8r_A 218 EA 219 (221)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 78
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.9e-11 Score=100.16 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhH
Q 007770 143 PQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (590)
Q Consensus 143 ~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 188 (590)
.+|+..||..|..+++|+..++..||..+||+.++||+||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999999999999974
No 79
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.13 E-value=8.9e-10 Score=108.11 Aligned_cols=200 Identities=10% Similarity=0.137 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccC--CCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhhHH-
Q 007770 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV- 413 (590)
Q Consensus 337 k~~~~elA~~Am~El~~ma~~~eplWi~~~~--~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV- 413 (590)
....++++..|+++++++... .--|-...+ .+ ..+ |.+..+. .|. .-|..++|-..+..+.
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g--~~v----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~ 83 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG--DTV----YTIEVPF------HGK---TFILKTFLPCPAELVYQ 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC--CEE----EEEEETT------TEE---EEEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC--CEE----EEEecCC------CCc---eEEEEEEecCCHHHHHH
Confidence 356789999999999999863 346976532 22 111 3333321 121 2378889988999998
Q ss_pred HHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhcc--ccccccceeeEEeeeeeecCCeEEEEEEec
Q 007770 414 ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (590)
Q Consensus 414 e~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvl--SPLVP~Re~~flRyckq~~~g~WaVvDVS~ 491 (590)
++|+|.+...+-.+. +..+..++.|..+ + .+ +-++..+ .++|+.|||.++|+++.. ++.|+|+-.|+
T Consensus 84 ~~~~d~~~r~~Wd~~-~~~~~vle~~~~~-------t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv 152 (229)
T 1em2_A 84 EVILQPERMVLWNKT-VTACQILQRVEDN-------T-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIAT 152 (229)
T ss_dssp HTTTCHHHHTTTCTT-EEEEEEEEEETTT-------E-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEEC
T ss_pred HHHhCccchhhcccc-cceEEEEEecCCC-------e-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecc
Confidence 777776533333333 3446777777532 2 23 3335544 568999999999999997 66799999999
Q ss_pred cCccCCCCCCCccceeecCCCceeeecC--CCceeEEEEEeeeecCccccchhhhhhccchhHhHHHHHHHHHHHHHHH
Q 007770 492 DTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (590)
Q Consensus 492 d~~~~~~~~~~~~~~rr~PSGclIqd~~--nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RWlatLqRqCErl 568 (590)
+.-. .+..+.++|...+++|++|++++ ++.|+|||+-|++..-+ ++ +.|++..+.-+.-..++.|+.+|+.+
T Consensus 153 ~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 153 SHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp CCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7432 12222489999999999999987 67899999999876543 55 67788888888888999999998864
No 80
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.07 E-value=1.8e-11 Score=128.27 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHH
Q 007770 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (590)
++.++.++..|+..||+.|+.++||+..+|.+||+++||+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44566799999999999999999999999999999999999999999999999976
No 81
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.06 E-value=7.2e-10 Score=110.39 Aligned_cols=193 Identities=15% Similarity=0.186 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHhhcCCCCCeeeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhhHH-HHhcChhh
Q 007770 343 LALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNR 421 (590)
Q Consensus 343 lA~~Am~El~~ma~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV-e~lmD~~~ 421 (590)
++..++.|+++.+.....-|-...+.... ++|.+.. +.|...-.=|..++|-..+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi---------~V~~k~~---~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNT---------DLAFKKV---GDGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSC---------EEEEECC---CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCe---------EEEEEEc---CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 33467777777765445569765433201 2221111 12333335577777777676765 78999999
Q ss_pred hhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEEeeeee-ecCCeEEEEEEeccCccCCCCC
Q 007770 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGA 500 (590)
Q Consensus 422 W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~flRyckq-~~~g~WaVvDVS~d~~~~~~~~ 500 (590)
|-..+ ..+..++.|+.. -.++|..+..+.| ++.|||.++|+.++ .++|.++|+-.|++.-. .+..
T Consensus 101 Wd~~~----~~~~vle~id~~--------~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P~~ 166 (237)
T 2pso_A 101 WDEDF----VQWKVVETLDRQ--------TEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQLL 166 (237)
T ss_dssp TCTTB----CCCEEEEEEETT--------EEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-CCCC
T ss_pred HHhhh----ceEEEEEEcCCC--------cEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-CCCC
Confidence 98873 446777777632 2466666666665 79999999999986 68999999999998532 1222
Q ss_pred CCccceeecCCCceeeecCCCceeEEEEEeeeecCccccchhhhhhccchhHhHHHHHHHHHHHHHH
Q 007770 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 567 (590)
Q Consensus 501 ~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RWlatLqRqCEr 567 (590)
.++|...+++|++|+++.+|.|+|||+-|++.. ..++.-+..++ .-.+-.-++.|+.+++.
T Consensus 167 -g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~----~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 167 -GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGF----GHLCAAEVARIRNSFQP 227 (237)
T ss_dssp -SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHH----HHHHHHHHHHHHHTTSC
T ss_pred -CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999876 45776643333 22222346666666554
No 82
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.85 E-value=1.6e-08 Score=99.16 Aligned_cols=150 Identities=13% Similarity=0.166 Sum_probs=113.9
Q ss_pred eeecceeEEechhhHHHHhcChh---hhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhc-cccccccceeeEE
Q 007770 398 ASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFL 473 (590)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqv-lSPLVP~Re~~fl 473 (590)
.-|..++|-..+..|++.|+|.. +|-..+ ..+..++.|.. .-.+.|.-+.- +-|+|..|||.++
T Consensus 68 ~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~----~~~~vle~id~--------~~~I~y~~~~~~~~~~v~~RDfv~~ 135 (224)
T 1jss_A 68 LYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLM----TSLDVLEHFEE--------NCCVMRYTTAGQLLNIISPREFVDF 135 (224)
T ss_dssp EEEEEEEESSCHHHHHHHHSSSTTHHHHCSSE----EEEEEEEECST--------TEEEEEEEECCBTTTTBCCEEEEEE
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccccccccce----eeEEEEEEcCC--------CeEEEEEEcccccCCCCCCCeEEEE
Confidence 34888899899999999999966 776662 33555555542 12445544443 3457999999999
Q ss_pred eeeeeecCCeEEEEEEeccCccCCCCCCCccceeecCCCceeeecCCC--ceeEEEEEeeeecCccccchhhhhhccchh
Q 007770 474 RFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMG 551 (590)
Q Consensus 474 Ryckq~~~g~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG--~skVtWVeH~e~d~~~vh~lyrpl~~SG~a 551 (590)
|+.++.++| ++|+-+|++.-. . .+.++|....++|++|+++++| .|+|||+-|++.-=+ ++ +.+++.-+.
T Consensus 136 r~~~~~~~~-~vi~~~Sv~hp~--~-~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~ 207 (224)
T 1jss_A 136 SYTVGYEEG-LLSCGVSVEWSE--T-RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMA 207 (224)
T ss_dssp EEEEEETTE-EEEEEEECCCCC--C-CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHH
T ss_pred EEEEEcCCe-EEEEEeeeecCC--C-CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHH
Confidence 999998777 788999998432 2 2358999999999999999875 899999999887543 54 467777778
Q ss_pred HhHHHHHHHHHHHHHH
Q 007770 552 FGAQRWVATLQRQCEC 567 (590)
Q Consensus 552 fGA~RWlatLqRqCEr 567 (590)
-+...++..|+.+|+.
T Consensus 208 ~~~~~~~~~Lr~~~~~ 223 (224)
T 1jss_A 208 STLANFYSDLRKGLRK 223 (224)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HhHHHHHHHHHHHHhh
Confidence 8888999999999863
No 83
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.84 E-value=1.3e-08 Score=98.01 Aligned_cols=151 Identities=16% Similarity=0.236 Sum_probs=117.8
Q ss_pred eeecceeEE-echhhHHHHhcC---hhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEE
Q 007770 398 ASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 473 (590)
Q Consensus 398 ASR~sgvV~-m~~~~LVe~lmD---~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~fl 473 (590)
.-|..++|- ..+..+.+.|+| ..+|... +...+||.. +|. .++|.++..|.|+ ..|||.++
T Consensus 53 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vle~------~~~-~i~~~~~~~p~p~-~~RD~v~~ 117 (214)
T 1ln1_A 53 EYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQEC------NGE-TVVYWEVKYPFPM-SNRDYVYL 117 (214)
T ss_dssp EEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEEEE------TTE-EEEEEEECCCTTS-CCEEEEEE
T ss_pred EEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEecc------CCC-EEEEEEEEcCCCC-CCceEEEE
Confidence 568889995 999999999999 4577665 345566654 232 4778888888886 99999999
Q ss_pred eeeeeec-CC--eEEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCccccchhhhhhccch
Q 007770 474 RFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGM 550 (590)
Q Consensus 474 Ryckq~~-~g--~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~ 550 (590)
|+++... +| .|+|+-.|++.-. .+..+.++|...+++|++|++..+|.|+||++-|++.. ..++.- |++..+
T Consensus 118 ~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~ 192 (214)
T 1ln1_A 118 RQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAA 192 (214)
T ss_dssp EEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHH
T ss_pred EEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHHH
Confidence 9999875 66 5999999987432 22223478999999999999999999999999999876 456643 556666
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 007770 551 GFGAQRWVATLQRQCECL 568 (590)
Q Consensus 551 afGA~RWlatLqRqCErl 568 (590)
.-++..++..|+++|+.+
T Consensus 193 ~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 193 KNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HTHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHHHHHhc
Confidence 677889999999999854
No 84
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.58 E-value=4.6e-09 Score=76.04 Aligned_cols=22 Identities=45% Similarity=0.835 Sum_probs=18.8
Q ss_pred cchhcccchhhhHHHHHHHHhh
Q 007770 176 RQVKFWFQNRRTQMKTQLERHE 197 (590)
Q Consensus 176 rQVkvWFQNRRaK~Kr~~~r~e 197 (590)
+||+|||||||+|||+++....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999998776543
No 85
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.51 E-value=2.4e-07 Score=93.75 Aligned_cols=128 Identities=11% Similarity=0.100 Sum_probs=95.2
Q ss_pred ecceeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhcccc--ccccceeeEEeeee
Q 007770 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 477 (590)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSP--LVP~Re~~flRyck 477 (590)
|..++|-..+..|.+.|||.+.+.+=.+.+ ..+..++-|+.. .++| .+..++| +++.|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~~---------~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDED---------DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEETT---------EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCCC---------eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 778889999999999999987444443332 345666666532 3566 5666775 79999999999998
Q ss_pred ee-cCCe-EEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCccccch
Q 007770 478 QH-AEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (590)
Q Consensus 478 q~-~~g~-WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~l 541 (590)
.. .+|. ++|+-+|++.-. -+..+.++|...+|+|++|+++++|-|+||++-|++ ...++..
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~d--pG~lP~~ 222 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQAT--PGVLNYV 222 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCC--GGGHHHH
T ss_pred eccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeC--CCCCCce
Confidence 74 4774 999999987422 121224899999999999999999999999998886 3545544
No 86
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.45 E-value=1.2e-06 Score=82.88 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=111.4
Q ss_pred eeecceeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEEeeee
Q 007770 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (590)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~flRyck 477 (590)
.=|..++|-..+..+.+.|+|.+...+--|. +...+||.. .. + -.++|.++..+-| +..|||.++|+.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vle~-~~----~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELLKA-TD----T-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEEEE-CS----S-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEEee-cC----C-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 4577888989999999999998776666555 455666665 21 2 2456777766655 7899999999999
Q ss_pred eecCCeEEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCccccchhhhhhccchhHhHHHH
Q 007770 478 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 557 (590)
Q Consensus 478 q~~~g~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RW 557 (590)
...+|...|+=.+ +. ...+..+.++|.+.+++|++|++ .+|.|+||++-|++.. ..++. -|++..+.-++-..
T Consensus 97 ~~~~g~~~i~~~~-~~-~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~-G~iP~---~lvn~~~~~~~~~~ 169 (189)
T 3qsz_A 97 KAGDGAITVRVEA-VP-DYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPG-GSIPS---WLANQTVVETPFGT 169 (189)
T ss_dssp ECTTSCEEEEEEE-CT-TSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSC-SSSCH---HHHHHTTTHHHHHH
T ss_pred ECCCCeEEEEEEc-CC-CccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCC-CCCCH---HHHHHHHHHHHHHH
Confidence 9888876554333 21 11111224789999999999999 9999999999998765 23443 46777777788888
Q ss_pred HHHHHHHHHH
Q 007770 558 VATLQRQCEC 567 (590)
Q Consensus 558 latLqRqCEr 567 (590)
+..|+++||.
T Consensus 170 l~~L~k~~~~ 179 (189)
T 3qsz_A 170 LKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhh
Confidence 9999999985
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.17 E-value=8.8e-06 Score=80.92 Aligned_cols=151 Identities=13% Similarity=0.186 Sum_probs=107.2
Q ss_pred eecceeEE-echhhHHHHhcCh---hhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEEe
Q 007770 399 SRETGMVI-INSLALVETLMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLR 474 (590)
Q Consensus 399 SR~sgvV~-m~~~~LVe~lmD~---~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~flR 474 (590)
=|..++|. ..+..+.+.|+|. .+|-.. +..+..++.|..+ . .+.|..+..+.|+ ..|||.++|
T Consensus 75 ~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~----~~~~~vle~i~~~------~--~i~y~~~~~p~p~-s~RDfV~~r 141 (255)
T 2e3n_A 75 LKATHAVKGVTGHEVCNYFWNVDVRNDWETT----IENFHVVETLADN------A--IIIYQTHKRVWPA-SQRDVLYLS 141 (255)
T ss_dssp EEEEEEEETCCHHHHHHHHHCGGGHHHHCCS----EEEEEEEEEEETT------E--EEEEEEECCCTTS-CCEEEEEEE
T ss_pred EEEEEEEcCCCHHHHHHHHhCcchHhhhhhh----cceeEEEEEcCCC------C--EEEEEEeecCCCc-CCceeEEEE
Confidence 35556665 6789999999995 466655 3446666666532 2 6788888888885 889999999
Q ss_pred eeeeec----C--CeEEEEEEeccCccCCCCCCCccceee---cCCCceeeecC--------CCceeEEEEEeeeecCcc
Q 007770 475 FCKQHA----E--GVWAVVDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMP--------NGYSKVTWVEHAEYDESQ 537 (590)
Q Consensus 475 yckq~~----~--g~WaVvDVS~d~~~~~~~~~~~~~~rr---~PSGclIqd~~--------nG~skVtWVeH~e~d~~~ 537 (590)
++++.. + +.|+|+..|++.-. .+..+.++|... +.+|++|++.. ++.|+|||+-|++.-- .
T Consensus 142 ~~~~~~~~~~~g~~~~~i~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~ 219 (255)
T 2e3n_A 142 VIRKIPALTENDPETWIVCNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-W 219 (255)
T ss_dssp EEEEECCSSTTSCCEEEEEEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-C
T ss_pred EEEeccccccCCCCEEEEEEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-c
Confidence 999883 3 59999999998432 121223678774 56888888763 3579999999987653 4
Q ss_pred ccchhhhhhccchhHhHHHHHHHHHHHHHH
Q 007770 538 VHQLYKPLIISGMGFGAQRWVATLQRQCEC 567 (590)
Q Consensus 538 vh~lyrpl~~SG~afGA~RWlatLqRqCEr 567 (590)
++.- |++.....+.-..|..|+.+|+.
T Consensus 220 iP~~---lvn~~~~~~~~~~l~~L~k~v~~ 246 (255)
T 2e3n_A 220 APAS---VLRAVAKREYPKFLKRFTSYVQE 246 (255)
T ss_dssp CCHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHH---HHHHHHhccccHHHHHHHHHHHH
Confidence 5543 55666677788889999998874
No 88
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.61 E-value=0.06 Score=46.28 Aligned_cols=140 Identities=8% Similarity=-0.043 Sum_probs=81.1
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEEeeeeeecC
Q 007770 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (590)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~flRyckq~~~ 481 (590)
+..|...+..+-+.|.|.+.|.+-+|.+ ..++++..+. +|. ...+.+--+ +.+.-+..++....++
T Consensus 7 ~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~----~~~~~~~~~--g~~~~~~~~~~~~~~~ 72 (147)
T 2d4r_A 7 ERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ART----RSRWVAVAM--GKKVRWLEEEEWDDEN 72 (147)
T ss_dssp EEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEE----EEEEEEEET--TEEEEEEEEEEEETTT
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----Ccc----EEEEEEEeC--CceEEEEEEEEEcCCC
Confidence 3445567788999999999999999975 3455655432 231 111222112 2233344455433223
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCccccchhhhhhccchhHhHHHHHHHH
Q 007770 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 561 (590)
Q Consensus 482 g~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RWlatL 561 (590)
...+. . .+++ +. ..+... .-+++.++| |+|+|..+.+..-..+..++.+++..-+.=+.++.+..|
T Consensus 73 ~~i~~-~-~~~g----~~-~~~~~~------~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 138 (147)
T 2d4r_A 73 LRNRF-F-SPEG----DF-DRYEGT------WVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGL 138 (147)
T ss_dssp TEEEE-E-EEEE----SC-SEEEEE------EEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEE-E-eccC----Ch-hheEEE------EEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 1221 10 001111 235677888 999999888876444556666666555557789999999
Q ss_pred HHHHHHHH
Q 007770 562 QRQCECLA 569 (590)
Q Consensus 562 qRqCErla 569 (590)
.+.||..+
T Consensus 139 k~~~e~~~ 146 (147)
T 2d4r_A 139 EERVLAAS 146 (147)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhc
Confidence 99999864
No 89
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=90.33 E-value=0.14 Score=42.94 Aligned_cols=43 Identities=9% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccch
Q 007770 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (590)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 184 (590)
.+||.++....-..+.... .....++|+.+|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 4688888765555553220 123678999999999999999753
No 90
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=89.58 E-value=2.3 Score=39.14 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=79.0
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhh-ccccccccceeeEEeeeeee
Q 007770 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQH 479 (590)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElq-vlSPLVP~Re~~flRyckq~ 479 (590)
.+.+|.-.+..+-+.+-|..+|-+.||. +...+|++.+. + .+.+.|. ..+--- .++-+..|+...
T Consensus 7 ~si~I~a~~~~V~~lV~Dve~yP~~~p~----~~~~~vl~~~~----~----~~~~rl~~~~~~~G-~~~~~ts~~~~d- 72 (159)
T 3tl1_A 7 NEITIAAPMELVWNMTNDIEKWPGLFSE----YASVEVLGRDD----D----KVTFRLTMHPDADG-KVWSWVSERVAD- 72 (159)
T ss_dssp EEEEESSCHHHHHHHHTCGGGHHHHCSS----EEEEEEEEECS----S----EEEEEEEECCCTTS-CCCEEEEEEEEE-
T ss_pred EEEEecCCHHHHHHHHHhHHHhhhhhhC----ceEEEEEecCC----C----EEEEEEEEEeccCc-eEEEEEEEEEEc-
Confidence 4556666888899999999999999998 56677887542 1 1333332 011111 234444555432
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCccccch--hhhhhccchhHhHHHH
Q 007770 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL--YKPLIISGMGFGAQRW 557 (590)
Q Consensus 480 ~~g~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~l--yrpl~~SG~afGA~RW 557 (590)
.++..+ ++.+ +.+++ | +.+=.-..+.+.++| |+|+|.-+.+++......+ -...++. ..+.-
T Consensus 73 ~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~~~~~----~~~~~ 136 (159)
T 3tl1_A 73 PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPVDDAWMTDNINR----NSRTQ 136 (159)
T ss_dssp TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHH----HHHHH
T ss_pred CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCCC-EEEEEEEEEEecCCCCCCHHHHHHHHHh----hHHHH
Confidence 223222 2221 11112 2 222223345677775 9999999999976532221 1112222 23445
Q ss_pred HHHHHHHHHHHHHH
Q 007770 558 VATLQRQCECLAIL 571 (590)
Q Consensus 558 latLqRqCErla~l 571 (590)
|+.|++.+|+.+--
T Consensus 137 L~~lK~~~E~~~~~ 150 (159)
T 3tl1_A 137 MALIRDRIEQAAGE 150 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhh
Confidence 89999999987754
No 91
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.25 E-value=0.17 Score=41.36 Aligned_cols=39 Identities=33% Similarity=0.420 Sum_probs=36.6
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccch
Q 007770 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (590)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 184 (590)
.+.|++.|+..+.+.......|+.+..|+..|||-||--
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999953
No 92
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=87.81 E-value=1.6 Score=38.70 Aligned_cols=140 Identities=15% Similarity=0.162 Sum_probs=81.8
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEEeeeeeec
Q 007770 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (590)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~flRyckq~~ 480 (590)
.+..|...+..+-+.+.|.++|.+.+|.+ ..++|+..+..|. |. -+.+++.+- .-+.++-+..|+..+-.
T Consensus 6 ~s~~i~ap~~~v~~~v~D~~~~p~~~p~~----~~~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~~ 75 (148)
T 1t17_A 6 VTKVLPYTPDQLFELVGDVDAYPKFVPWI----TGMRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDKD 75 (148)
T ss_dssp EEEEESSCTHHHHHHHTTTTCCSSCCSSC----CCCCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEETT
T ss_pred EEEEecCCHHHHHHHHHHHhhHHhhCCCc----CeeEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcCC
Confidence 34566667889999999999999999995 4445665332111 11 134455442 22556667777775433
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCccccchhhhhhccchhHhHHHHHHH
Q 007770 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (590)
Q Consensus 481 ~g~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RWlat 560 (590)
++ .|.-..+++. .. .....++ +++.++| |+|++.-+.|..- .|+..++..-+.--+++-+.+
T Consensus 76 ~~--~i~~~~~~G~----f~-~~~g~w~------f~~~~~g-t~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~ 137 (148)
T 1t17_A 76 AR--SIDVSLLYGP----FK-RLNNGWR------FMPEGDA-TRVEFVIEFAFKS----ALLDAMLAANVDRAAGKLIAC 137 (148)
T ss_dssp TC--EEEEEESSTT----SS-CEEEEEE------EEEETTE-EEEEEEEEECCSC----HHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc--EEEEEECCCC----hh-ccEEEEE------EEECCCC-eEEEEEEEEEECc----HHHHHHHHHHHHHHHHHHHHH
Confidence 32 2333334431 10 1122343 3566778 9999988887752 344445532223347788888
Q ss_pred HHHHHHHH
Q 007770 561 LQRQCECL 568 (590)
Q Consensus 561 LqRqCErl 568 (590)
+.+.||.+
T Consensus 138 f~~r~~~~ 145 (148)
T 1t17_A 138 FEARAQQL 145 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 93
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=85.21 E-value=5.2 Score=37.18 Aligned_cols=141 Identities=10% Similarity=0.057 Sum_probs=75.6
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhh--hhccccccccceeeEEeeeee
Q 007770 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAE--LQVLSPLVPVREVNFLRFCKQ 478 (590)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aE--lqvlSPLVP~Re~~flRyckq 478 (590)
.+.+|.-.+..+-+.+-|.++|-+.||.+ ...+|+..+. + .+..+ +++..--. .+++..-|.+.
T Consensus 7 ~si~I~a~~~~v~~lv~Dv~~~p~w~p~~----~~~~~~~~~~-----~---~~~~~l~~~~~~~G~-~~~~ts~~~~d- 72 (169)
T 3tvq_A 7 NSIVVNAPFELVWDVTNDIEAWPELFSEY----AEAEILRQDG-----D---GFDFRLKTRPDANGR-VWEWVSHRVPD- 72 (169)
T ss_dssp EEEEESSCHHHHHHHHTCGGGHHHHCTTE----EEEEEEEEET-----T---EEEEEEEECCCTTSC-CCEEEEEEEEE-
T ss_pred EEEEecCCHHHHHHHHHhhhHHHHHHhhe----eEEEEEecCC-----C---EEEEEEEEEecCCCe-EEEEEEEEEEc-
Confidence 34555567778999999999999999995 5566666432 1 11111 11211111 22222222211
Q ss_pred ecCCeEEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCcccc--chhhhhhccchhHhHHH
Q 007770 479 HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVH--QLYKPLIISGMGFGAQR 556 (590)
Q Consensus 479 ~~~g~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh--~lyrpl~~SG~afGA~R 556 (590)
.++..+ ++.+ +.+++ | +.+=.-.-+.+.++| |+|+|.-+.+++....- ..-+..++. ..+.
T Consensus 73 -~~~~~I--~~~~--l~~gP----f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~----~~~~ 135 (169)
T 3tvq_A 73 -KGSRTV--RAHR--VETGP----F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNT----TTRA 135 (169)
T ss_dssp -GGGTEE--EEEE--SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHH----HHHH
T ss_pred -CCCcEE--EEEE--cCCCC----h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHh----hHHH
Confidence 222121 1110 11111 2 122223446788888 99999999998754211 122223322 2356
Q ss_pred HHHHHHHHHHHHHHHh
Q 007770 557 WVATLQRQCECLAILM 572 (590)
Q Consensus 557 WlatLqRqCErla~l~ 572 (590)
.|+.|++.+|+.+.--
T Consensus 136 ~L~~LK~~aE~~~~~~ 151 (169)
T 3tvq_A 136 NMERIKKIIEDRHREG 151 (169)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhc
Confidence 7999999999987543
No 94
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=84.55 E-value=5.3 Score=36.56 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=81.5
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEEeeeeeec
Q 007770 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (590)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~flRyckq~~ 480 (590)
.+-+|--.+..+-+.+-|.++|-+.+|. +..++|+..+. ++ +.+++.+--. ..++-+.-|+..+-+
T Consensus 9 ~si~I~ap~~~V~~~v~D~~~~p~~~P~----~~~~~v~~~~~----~~----~~~~~~~~~~--G~~~~~~s~~~~~~~ 74 (172)
T 3tfz_A 9 HTVTVAAPADLVWEVLADVLGYADIFPP----TEKVEILEEGQ----GY----QVVRLHVDVA--GEINTWTSRRDLDPA 74 (172)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHCSS----EEEEEEEEEET----TE----EEEEEEEEET--TEEEEEEEEEEEETT
T ss_pred EEEEeCCCHHHHHHHHHhHHHHHhhCcc----cceEEEEecCC----CE----EEEEEEEecC--CEEEEEEEEEEEeCC
Confidence 4455666788889999999999999999 45666776432 11 3344443222 223333333333322
Q ss_pred CCe--EEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCccccchhhhhhc---------cc
Q 007770 481 EGV--WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLII---------SG 549 (590)
Q Consensus 481 ~g~--WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~lyrpl~~---------SG 549 (590)
+.. |-.++ .+ ++.. .+...++ +.+.++|.|+|+|.-+.++....+..++.++.. --
T Consensus 75 ~~~i~~~~~~--~~----gpf~-~~~g~w~------f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~ 141 (172)
T 3tfz_A 75 RRVIAYRQLE--TA----PIVG-HMSGEWR------AFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAV 141 (172)
T ss_dssp TTEEEEEEEE--CC----TTEE-EEEEEEE------EEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHH
T ss_pred CCEEEEEEee--CC----CChh-hcEEEEE------EEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHH
Confidence 221 22221 01 1100 0111222 456666789999999999887776666655432 11
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHh
Q 007770 550 MGFGAQRWVATLQRQCECLAILM 572 (590)
Q Consensus 550 ~afGA~RWlatLqRqCErla~l~ 572 (590)
+.=+.+.=|+.|.+.+|+.+...
T Consensus 142 l~~~~~~~L~~lk~~aE~~~~~~ 164 (172)
T 3tfz_A 142 VERNSVADLNAVLGEAERRVRAA 164 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHhhc
Confidence 22234557888888999876543
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=77.88 E-value=8.1 Score=32.98 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=45.3
Q ss_pred CCCccchhcccchhhhHHHHHHHHhhhhHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCchhhhHHHHHHHHhH
Q 007770 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (590)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~~~~L~~ENa~Lk 251 (590)
||+..+|.-|=|-||+-.-+-..........++...|..++..|.. +..+|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 7888888888777776554444444444444555666666665554 4567888999999
Q ss_pred HHHHHHHH
Q 007770 252 DELDRVCA 259 (590)
Q Consensus 252 ~el~r~~~ 259 (590)
.|++.+..
T Consensus 76 ~e~d~~k~ 83 (90)
T 2wt7_B 76 RERDAYKV 83 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 96
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.40 E-value=6.3 Score=33.03 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=17.6
Q ss_pred hHHHHHHHHhHHHHH----HHHHHhhh
Q 007770 241 QHLRIENARLKDELD----RVCALAGK 263 (590)
Q Consensus 241 ~~L~~ENa~Lk~el~----r~~~~~~~ 263 (590)
..|..||.+||+|.. |++++++|
T Consensus 51 ~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 51 EELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899999999985 56666555
No 97
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=73.27 E-value=1.4 Score=44.14 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHhHHHH
Q 007770 239 EEQHLRIENARLKDEL 254 (590)
Q Consensus 239 ~~~~L~~ENa~Lk~el 254 (590)
+.++|+.||++||+.|
T Consensus 44 ~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 44 EVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445777888888765
No 98
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.71 E-value=9.7 Score=30.11 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=31.8
Q ss_pred HHHHhhhhHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCchhhhHHHHHHHHhHHHHH
Q 007770 192 QLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (590)
Q Consensus 192 ~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~~~~L~~ENa~Lk~el~ 255 (590)
+.++.....+..+.+.|..+|..|...+ ..|..|+..||+-|.
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 3355667778888899999988888744 457788888887553
No 99
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=72.41 E-value=30 Score=31.19 Aligned_cols=140 Identities=15% Similarity=0.095 Sum_probs=78.3
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEEeeeeeec
Q 007770 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (590)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~flRyckq~~ 480 (590)
.+.+|.-.+..+-+.+.|.++|...||..+.- +-. + +|....+.|++.+-. ...|+.+..|+...-+
T Consensus 11 ~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~--~-----~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~~ 77 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDL--G-----NNAYRWEMEKVGVDK--HAIQSVYACTYHADKE 77 (161)
T ss_dssp EEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEE--E-----TTEEEEEECCBSSGG--GCBCCEEEEEEEEETT
T ss_pred EEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEc--C-----CCceEEEEEEEeeee--EEEEEEEEEEEEEcCC
Confidence 34566678889999999999999999987653 111 1 122233445554433 2348888888876543
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCccccchhhhhhccchhHhHHHHHHH
Q 007770 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (590)
Q Consensus 481 ~g~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RWlat 560 (590)
+. . ++..+. +++........++ +++.++|-|+|+|.-..|.. -.+..++..++..-+.=.+++=+.+
T Consensus 78 ~~-~--I~~~~~---~g~~~~~l~g~w~------f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~a 144 (161)
T 3p9v_A 78 AG-K--ITWSPI---KGEGNGVVSGSWT------LSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDT 144 (161)
T ss_dssp TT-E--EEEEEC---TTSTTEEEEEEEE------EEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CC-E--EEEEEe---cCccceeEEEEEE------EEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33 2 222221 1111000122333 46677888999999888876 1234444444422222335665555
Q ss_pred HHHHHH
Q 007770 561 LQRQCE 566 (590)
Q Consensus 561 LqRqCE 566 (590)
..+-|+
T Consensus 145 f~~ra~ 150 (161)
T 3p9v_A 145 YMANLK 150 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 100
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.98 E-value=12 Score=29.06 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=29.3
Q ss_pred HHHhhhhHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCchhhhHHHHHHHHhHHHH
Q 007770 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (590)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~~~~L~~ENa~Lk~el 254 (590)
.+......|..+.+.|..+|..|... ...|+.|++.||..|
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~---------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSE---------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 34556677888888888888887764 345777777777654
No 101
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.71 E-value=17 Score=30.80 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=10.5
Q ss_pred hHHHHhhHHHHhhhhhHHh
Q 007770 199 SLLRQENDKLRAENMSIRD 217 (590)
Q Consensus 199 ~~l~~en~~L~~en~~l~e 217 (590)
..+..+.+.|..||..|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666555443
No 102
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=58.98 E-value=11 Score=32.31 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCc
Q 007770 221 NPICTNCGGPAI 232 (590)
Q Consensus 221 ~~~C~~Cg~p~~ 232 (590)
...||.||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 557999999764
No 103
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=58.91 E-value=6.7 Score=25.73 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.8
Q ss_pred hHHHHHHHHhHHHHHHHH
Q 007770 241 QHLRIENARLKDELDRVC 258 (590)
Q Consensus 241 ~~L~~ENa~Lk~el~r~~ 258 (590)
++|...|+|||+|+..+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 468889999999987654
No 104
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=55.84 E-value=1e+02 Score=26.85 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=68.8
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEE--eeeeeec
Q 007770 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL--RFCKQHA 480 (590)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~fl--Ryckq~~ 480 (590)
-.|-..+.++-+.|.|.+.|.+-+|.+ ..++++..|. + .+.+.+ ++-+.+.-+.. +|....+
T Consensus 9 ~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~~---~-------~~~~~~--~~g~~~~~~~~~~~~~~~~~ 72 (162)
T 2pcs_A 9 IELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGEDK---Y-------KADLQI--GIAAVKGKYDAIIEVTDIKP 72 (162)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETTE---E-------EEEEEE--CCGGGCEEEEEEEEEEEEET
T ss_pred EEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCCe---E-------EEEEEE--EeeeEEEEEEEEEEEEecCC
Confidence 345667788999999999999999874 4566664221 1 111111 11122222222 3433344
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCCceeeecCCCceeEEEEEeeeecCccccchhhhhhccchhHhHHHHHHH
Q 007770 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (590)
Q Consensus 481 ~g~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RWlat 560 (590)
...|++.-...+. + .+... =--+-+.+..+|.|+|||.-.+++.-. +..+..+|+..-.-=.....+..
T Consensus 73 ~~~~~~~~~~~~~----~---~~~~~---~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~~~~~~~~~~~~~~~ 141 (162)
T 2pcs_A 73 PYHYKLLVNGEGG----P---GFVNA---EGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRMLGGVAKLLISDFFKK 141 (162)
T ss_dssp TTEEEEEEEEEET----T---EEEEE---EEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEecCC----C---ccEEE---EEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHHHHHHHHHHHHHHHH
Confidence 4555444333221 0 01100 011234565677899999877777433 34555555533211123444555
Q ss_pred HHHHHH
Q 007770 561 LQRQCE 566 (590)
Q Consensus 561 LqRqCE 566 (590)
|++.+|
T Consensus 142 lk~~~e 147 (162)
T 2pcs_A 142 IQKEIA 147 (162)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555554
No 105
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.85 E-value=18 Score=28.27 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=15.6
Q ss_pred HHhhhhHHHHhhHHHHhhhhhHHh
Q 007770 194 ERHENSLLRQENDKLRAENMSIRD 217 (590)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e 217 (590)
+......|..+.+.|..+|..|..
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777776665
No 106
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=53.28 E-value=13 Score=30.48 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhccc
Q 007770 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (590)
Q Consensus 135 Kr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 182 (590)
|+.+.+|+.++....-..+... . ...++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 3445678998866555556432 1 35688999999999999996
No 107
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=51.40 E-value=41 Score=24.90 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHhHHHHHHHHHH
Q 007770 239 EEQHLRIENARLKDELDRVCAL 260 (590)
Q Consensus 239 ~~~~L~~ENa~Lk~el~r~~~~ 260 (590)
++|.|..--+.|++|+.|+...
T Consensus 25 deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 5666666677788888877654
No 108
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=51.23 E-value=3 Score=36.74 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=38.5
Q ss_pred CCCccchhcccchhhhHHHHHHHHhhhhHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCchhhhHHHHHHHHhH
Q 007770 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (590)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~~~~L~~ENa~Lk 251 (590)
||++.+|.-.=|-||.-.-|...+.......++.+.|..++..|.. +..+|..||+.|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~---------------------e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ---------------------EVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS---------------------TTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 6777777666565555444433344444444555556555544433 4456777888888
Q ss_pred HHHHHHH
Q 007770 252 DELDRVC 258 (590)
Q Consensus 252 ~el~r~~ 258 (590)
.|++++.
T Consensus 86 ~E~~~lk 92 (107)
T 3a5t_A 86 LELDALR 92 (107)
T ss_dssp HTTTSSS
T ss_pred HHHHHHH
Confidence 8876543
No 109
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=51.12 E-value=16 Score=31.56 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhH
Q 007770 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (590)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 188 (590)
+|.+||.++...+-..+..+.... ..++|+.+|++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 456799999887777775555443 3368999999999999998665543
No 110
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=50.35 E-value=0.4 Score=40.86 Aligned_cols=45 Identities=11% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhhhcC--CCCCH-HHHHHHHHHcCCCccchhcccc
Q 007770 139 HRHTPQQIQELESLFKEC--PHPDE-KQRLELSKRLCLETRQVKFWFQ 183 (590)
Q Consensus 139 trfT~~Ql~~LE~~F~~~--~~Ps~-~~R~~LA~~LgLs~rQVkvWFQ 183 (590)
.+||.++....-..+... .|++. ....++|+++|+++..|..|.+
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 368888876554444322 12332 4567899999999999999954
No 111
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=49.93 E-value=27 Score=28.31 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=6.9
Q ss_pred HHHHHHhHHHHHHHH
Q 007770 244 RIENARLKDELDRVC 258 (590)
Q Consensus 244 ~~ENa~Lk~el~r~~ 258 (590)
..||..|++++..+.
T Consensus 49 ~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 49 TLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 112
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=49.47 E-value=11 Score=28.48 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccc
Q 007770 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (590)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 183 (590)
..|+.++.......+.... .......++|+++|+++..|..|.+
T Consensus 4 ~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4588888777755554332 2111256899999999999999964
No 113
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=47.56 E-value=31 Score=28.56 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=7.7
Q ss_pred HHHhhHHHHhhhhhHH
Q 007770 201 LRQENDKLRAENMSIR 216 (590)
Q Consensus 201 l~~en~~L~~en~~l~ 216 (590)
+....+.|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555544333
No 114
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=47.43 E-value=7 Score=33.86 Aligned_cols=57 Identities=25% Similarity=0.219 Sum_probs=33.4
Q ss_pred HHhhhhHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCchhhhHHHHHHHHhHHHHHHH
Q 007770 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 257 (590)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~~~~L~~ENa~Lk~el~r~ 257 (590)
.-+++-.|....+.+..||.+++..-... | .-..+...+..+|+.||.+|+.|-+.-
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666677777777777766642211 0 111122345568888888888876543
No 115
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.25 E-value=21 Score=29.16 Aligned_cols=49 Identities=8% Similarity=0.108 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.+++.|..+|.-.|-... .-.++|+.||++...|+.+...=|.|.|+..
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 377888888877554332 4678999999999999988766555555433
No 116
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=44.14 E-value=63 Score=25.21 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=18.7
Q ss_pred HHHhhhhHHHHhhHHHHhhhhhHHhhh
Q 007770 193 LERHENSLLRQENDKLRAENMSIRDAM 219 (590)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~ea~ 219 (590)
.+......|..+.+.|..+|..|+..+
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888887777643
No 117
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.58 E-value=36 Score=26.05 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=27.3
Q ss_pred HHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCchhhhHHHHHHHHhHHHHHHHH
Q 007770 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (590)
Q Consensus 200 ~l~~en~~L~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~~~~L~~ENa~Lk~el~r~~ 258 (590)
.++.+++.|.+.|.+|.+++. .-+.|-..||+||+++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh
Confidence 466777777777777777553 35677888999998763
No 118
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=42.44 E-value=10 Score=26.64 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhh
Q 007770 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (590)
Q Consensus 141 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRa 187 (590)
++.++...+...+... ....++|+.+|++..-|..|+.....
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 5666666655556543 23568999999999999999975443
No 119
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.79 E-value=24 Score=24.65 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=18.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHh
Q 007770 241 QHLRIENARLKDELDRVCALA 261 (590)
Q Consensus 241 ~~L~~ENa~Lk~el~r~~~~~ 261 (590)
..|..||..|.+|+.|+..++
T Consensus 10 EeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 10 EELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHh
Confidence 468899999999999998875
No 120
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=38.47 E-value=1.8e+02 Score=25.15 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=26.0
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeC
Q 007770 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISS 441 (590)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~ 441 (590)
..|-..+.++-+.|.|...|.+-+|.| ..++++..
T Consensus 8 i~I~ap~e~Vw~~l~d~~~~~~w~p~v----~~~~~~~g 42 (151)
T 2le1_A 8 VEVAAPAADVWTLVGDFSAIHRWHPQV----SAPTLRGA 42 (151)
T ss_dssp EEESSCHHHHHHHHTTSGGGGGTCTTC----CCEEEESS
T ss_pred EEecCCHHHHHHHHhCcCcHHHhcCCc----eEEEEECC
Confidence 345567788889999999999999985 34555553
No 121
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=38.01 E-value=54 Score=28.33 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHH
Q 007770 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (590)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 193 (590)
.+++.|...+...|.... .-.++|..+|+++..|+.|.+.=|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 478888888888754432 3578999999999999999877666666543
No 122
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.09 E-value=36 Score=34.09 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.2
Q ss_pred hhHHHHHHHHhHHHHHHHHH
Q 007770 240 EQHLRIENARLKDELDRVCA 259 (590)
Q Consensus 240 ~~~L~~ENa~Lk~el~r~~~ 259 (590)
.++++.|..+||+|++++..
T Consensus 77 Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 77 LKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34578899999999999874
No 123
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=36.44 E-value=25 Score=24.06 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccch
Q 007770 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (590)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 184 (590)
.++.++...+...+.... ...++|+.+|++...|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g~-----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHhh
Confidence 477777755555564332 3668999999999999999753
No 124
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.93 E-value=58 Score=26.38 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=8.4
Q ss_pred hhHHHHHHHHhHHHHH
Q 007770 240 EQHLRIENARLKDELD 255 (590)
Q Consensus 240 ~~~L~~ENa~Lk~el~ 255 (590)
.+.|+.++..|..|+.
T Consensus 52 n~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 52 NDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 125
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=35.53 E-value=63 Score=27.73 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHH
Q 007770 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (590)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 194 (590)
.+++.|...+.-.|-... .-.++|..+|+++..|+.+...=|.+.|+...
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 477888888877654332 35789999999999999998766666665443
No 126
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=32.64 E-value=27 Score=26.35 Aligned_cols=46 Identities=9% Similarity=-0.096 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHH
Q 007770 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (590)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (590)
.+++.+...|...|-... .-.++|..+|+++..|+.+...=|.+.|
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478888888888764332 3568999999999999988754444443
No 127
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.29 E-value=1.5e+02 Score=24.98 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=8.2
Q ss_pred HHHHHHHHhHHHHHHHH
Q 007770 242 HLRIENARLKDELDRVC 258 (590)
Q Consensus 242 ~L~~ENa~Lk~el~r~~ 258 (590)
.|..||+.|+.+++.+.
T Consensus 47 ~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555444443
No 128
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.81 E-value=59 Score=25.59 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCchhhhHHHHHHHHhHHHHHH
Q 007770 185 RRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (590)
Q Consensus 185 RRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~~~~L~~ENa~Lk~el~r 256 (590)
||.+.| +......|..+.+.|..+|..|.. |.+.|++++..
T Consensus 22 rrsR~R---K~~~~~~Le~~v~~L~~eN~~L~~----------------------------ev~~Lr~~l~~ 62 (63)
T 2dgc_A 22 RRSRAR---KLQRMKQLEDKVEELLSKNYHLEN----------------------------EVARLKKLVGE 62 (63)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHC---
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHhc
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=31.26 E-value=49 Score=28.57 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHH
Q 007770 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (590)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 192 (590)
.+++.|..++. .|-.. ..-.++|+.||++...|+.+.+.=|.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46777777777 33322 2467899999999999998876555555543
No 130
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=29.76 E-value=1.5e+02 Score=26.93 Aligned_cols=135 Identities=11% Similarity=0.163 Sum_probs=67.7
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCchhhhhhhhhhccccccccceeeEEeeeeeecC
Q 007770 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (590)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~flRyckq~~~ 481 (590)
+..|...+.++-++|.|-..| .-+|.++.. ++++ .|.+|+.-|++..+ . . ..+| .++.|=...--
T Consensus 7 si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s---~e~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~~ 71 (160)
T 3p51_A 7 SIVVDAPVERVWSRIRNFHDF-SWAPSLIKS---CKKV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIERR 71 (160)
T ss_dssp EEEESSCHHHHHHHHCCTTCC-TTCTTTCCC---EEEE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTTE
T ss_pred EEEECCCHHHHHHHHhCcCCC-eEccCceEE---EEEE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCcE
Confidence 344555778888999999999 999988543 3444 45444445776554 1 1 1233 22222211011
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCCceeeecC-CCceeEEEEEeeeecCccccchhhhhhccchhHhHHHHHHH
Q 007770 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (590)
Q Consensus 482 g~WaVvDVS~d~~~~~~~~~~~~~~rr~PSGclIqd~~-nG~skVtWVeH~e~d~~~vh~lyrpl~~SG~afGA~RWlat 560 (590)
=+|-|++-.+- ... . ..+..=+=.-+.+.+ +|.|.|+|.-.++.++..+....+.+| +..|+.
T Consensus 72 ~sY~ii~g~l~---~~~--~---~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~~~~~~~~~~~~--------~~~L~~ 135 (160)
T 3p51_A 72 IMYSMDEGPSP---VSS--G---EIYNYVGNLHLLPVTIDDTTFVEWSGSWESASTEAVEYMNTVY--------RSLLAD 135 (160)
T ss_dssp EEEEEEECSTT---SST--T---TEEEEEEEEEEEEETTTTEEEEEEEEEEEESCSHHHHHHHHHH--------HHHHHH
T ss_pred EEEEEecCCCc---ccc--c---ceeEEEEEEEEEEecCCCCEEEEEEEEEEeCHHHHHHHHHHHH--------HHHHHH
Confidence 14555542110 000 0 001111111244454 788999999888776532222223333 344667
Q ss_pred HHHHHHH
Q 007770 561 LQRQCEC 567 (590)
Q Consensus 561 LqRqCEr 567 (590)
|++..|.
T Consensus 136 Lk~~~e~ 142 (160)
T 3p51_A 136 LAAEFTS 142 (160)
T ss_dssp HHHHSCT
T ss_pred HHHHHhh
Confidence 7776664
No 131
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=28.20 E-value=34 Score=27.96 Aligned_cols=37 Identities=16% Similarity=0.436 Sum_probs=24.3
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHHh
Q 007770 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (590)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 196 (590)
+....-.|+.+|||+..--.+ |+ .|||-+|+.++.+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHHHH
Confidence 455666799999998542111 21 48999999766543
No 132
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.56 E-value=1.2e+02 Score=25.33 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=13.6
Q ss_pred HHHHHHHhHHHHHHHHHHhh
Q 007770 243 LRIENARLKDELDRVCALAG 262 (590)
Q Consensus 243 L~~ENa~Lk~el~r~~~~~~ 262 (590)
|..|++.||.|++++..++.
T Consensus 58 l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 58 KDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777766653
No 133
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.32 E-value=54 Score=27.65 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhH
Q 007770 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (590)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 188 (590)
..+|+.|.++|.-.++-.. -.++|+.|++++..|+.+.++=+.|
T Consensus 33 ~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4589999999988664332 4889999999999999876543333
No 134
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.53 E-value=72 Score=27.60 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=12.9
Q ss_pred HhhhhHHHHhhHHHHhhhhhHHh
Q 007770 195 RHENSLLRQENDKLRAENMSIRD 217 (590)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e 217 (590)
......|..+.++|++||..|+.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666555443
No 135
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.36 E-value=1.4e+02 Score=31.60 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHhHHHHHHHHH
Q 007770 238 LEEQHLRIENARLKDELDRVCA 259 (590)
Q Consensus 238 ~~~~~L~~ENa~Lk~el~r~~~ 259 (590)
-+.++|+.||+||+++++.+..
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhh
Confidence 3667899999999999877654
No 136
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=25.05 E-value=2.3 Score=39.28 Aligned_cols=30 Identities=3% Similarity=-0.092 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCH
Q 007770 132 PPRKKRYHRHTPQQIQELESLFKECPHPDE 161 (590)
Q Consensus 132 ~kkKr~RtrfT~~Ql~~LE~~F~~~~~Ps~ 161 (590)
.+.||.|+.|+..|++.|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 345677889999999999999999999874
No 137
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.94 E-value=2.3e+02 Score=24.45 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHhhh
Q 007770 239 EEQHLRIENARLKDELDRVCALAGK 263 (590)
Q Consensus 239 ~~~~L~~ENa~Lk~el~r~~~~~~~ 263 (590)
..++...+-..|++|++++...+.+
T Consensus 69 a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 69 ARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888776544
No 138
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.74 E-value=48 Score=32.88 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHHHHh
Q 007770 243 LRIENARLKDELDRVCALA 261 (590)
Q Consensus 243 L~~ENa~Lk~el~r~~~~~ 261 (590)
...+...|++|.+|++.++
T Consensus 41 ~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 41 LESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567788899999988874
No 139
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.56 E-value=65 Score=24.59 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=10.8
Q ss_pred HHHHhhHHHHhhhhhHHhhhc
Q 007770 200 LLRQENDKLRAENMSIRDAMR 220 (590)
Q Consensus 200 ~l~~en~~L~~en~~l~ea~~ 220 (590)
+|-.+-+.|+.||.-||+++.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344445555555555555543
No 140
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.34 E-value=99 Score=23.59 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=0.0
Q ss_pred HhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCchhhhHHHHHHHHhHHHHHHHHHHhhhc
Q 007770 203 QENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKF 264 (590)
Q Consensus 203 ~en~~L~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~~~~L~~ENa~Lk~el~r~~~~~~~~ 264 (590)
.+.++|+.||..|+. ++..|+++++.+++-+.+|
T Consensus 19 ~d~eaLk~E~~eLk~----------------------------k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 19 PEIELLRLELAEMKE----------------------------KYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHhcc
No 141
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.22 E-value=55 Score=39.13 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=30.5
Q ss_pred HHhhhhHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCchhhhHHHHHHHHhHHHHHHHHH
Q 007770 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (590)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~~~~L~~ENa~Lk~el~r~~~ 259 (590)
.+++...++.+++++..|++.+.+.+.... .++.-...+|..||+.|+++++.+..
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~----------~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555433210 01111223788899999988888774
No 142
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=23.97 E-value=22 Score=31.44 Aligned_cols=36 Identities=25% Similarity=0.557 Sum_probs=23.6
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHHHHHHH
Q 007770 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (590)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 195 (590)
+....-.|+.+|||+..- .+|-+ .|||.+||.++.+
T Consensus 15 vRiIkiLyQSNPyP~peG-----------TRqaR---RNRRRRWR~RQrQ 50 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEG-----------TRQAR---RNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHSSCCCCCCC-----------CTTTH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCC-----------chhhh---HhHHHHHHHHHHH
Confidence 345566789999998641 11111 5999999976643
No 143
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.93 E-value=2.6e+02 Score=22.88 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=10.4
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 007770 242 HLRIENARLKDELDRVCA 259 (590)
Q Consensus 242 ~L~~ENa~Lk~el~r~~~ 259 (590)
.|..||..|+.+++.+..
T Consensus 47 ~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666655544
No 144
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.84 E-value=69 Score=22.49 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHh
Q 007770 241 QHLRIENARLKDELDRVCALA 261 (590)
Q Consensus 241 ~~L~~ENa~Lk~el~r~~~~~ 261 (590)
..|..+|..|++|+.|+..++
T Consensus 11 EeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 11 XELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 358889999999999988775
No 145
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.65 E-value=51 Score=26.43 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHHH
Q 007770 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (590)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 190 (590)
..+++.|.+.|.-.++. ..-.++|+.+|++...|+.+.++=+.|.+
T Consensus 20 ~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 45899999999885432 24678999999999999977654444433
No 146
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=23.25 E-value=68 Score=26.42 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccch
Q 007770 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (590)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 184 (590)
....+|..+.++|.-.++-. ...++|..|+++++.|+...++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTS 67 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 34469999999998877332 3678999999999999866543
No 147
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.99 E-value=68 Score=26.39 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhH
Q 007770 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (590)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 188 (590)
..+++.|.++|.-.++... -.++|+.||+++..|+.+..+=+.|
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4589999999988654433 4789999999999999776544433
No 148
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.49 E-value=79 Score=23.89 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHcCCCccchhcccchhhhHH
Q 007770 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQM 189 (590)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~ 189 (590)
..+++.|...|...++.. .-.++|+.+|+++..|+.+.++=+.|.
T Consensus 10 ~~L~~~e~~il~~~~~g~------s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFELLVQDK------TTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 458999999998854322 356899999999999988776444333
No 149
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=21.00 E-value=3.8e+02 Score=22.67 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=21.4
Q ss_pred eEEechhhHHHHhcChhhhhhhcccc
Q 007770 404 MVIINSLALVETLMDPNRWAEMFPCM 429 (590)
Q Consensus 404 vV~m~~~~LVe~lmD~~~W~~~Fp~i 429 (590)
.|--.+..+-+.|.|.+.|.+-+|.+
T Consensus 20 ~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 20 EVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 34456778889999999999999975
No 150
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=20.72 E-value=24 Score=27.38 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=25.9
Q ss_pred CCCCCCCccCCCchhhhHHHHHHHHhHHHHHHHHH
Q 007770 225 TNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (590)
Q Consensus 225 ~~Cg~p~~~~~~~~~~~~L~~ENa~Lk~el~r~~~ 259 (590)
..|+.|+.--.--++.|+|-.|-.+|+.||..++.
T Consensus 21 ~DC~~P~~~~rTLLEi~KL~LEIQKL~~EL~glsk 55 (65)
T 2yf2_A 21 SDCHVPTEDVKTLLEIRKLFLEIQKLKVELQGLSK 55 (65)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHcchhH
Confidence 35777764333346788999999999999988765
No 151
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.35 E-value=1.5e+02 Score=26.02 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=20.2
Q ss_pred hhhHHHHhhHHHHhhhhhHHhhhcC
Q 007770 197 ENSLLRQENDKLRAENMSIRDAMRN 221 (590)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea~~~ 221 (590)
....|.++..+|+-||+.|++.+..
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466889999999999999999975
No 152
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.17 E-value=1.8e+02 Score=22.65 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.1
Q ss_pred hhHHHHHHHHhHHHHHHHHHHhhh
Q 007770 240 EQHLRIENARLKDELDRVCALAGK 263 (590)
Q Consensus 240 ~~~L~~ENa~Lk~el~r~~~~~~~ 263 (590)
.+||...+..-.+|++|+.+++..
T Consensus 27 v~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 27 IQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888899999887654
Done!