BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007771
         (590 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1
          Length = 357

 Score = 33.9 bits (76), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 7/56 (12%)

Query: 349 FKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLMDRTTSMYQD 404
           F K+ FY F+ E Y      ++   ++ ++S TGR G +E ++  ++DR   +YQ+
Sbjct: 209 FVKEDFYKFLKEKYPE----LAKKVVIEDTSVTGRTGIYEVIKRGVVDR---VYQE 257


>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone
           Oxidoreductase Complexed With Nadph
 pdb|1QOR|B Chain B, Crystal Structure Of Escherichia Coli Quinone
           Oxidoreductase Complexed With Nadph
          Length = 327

 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 301 DFLERLR----GKKLVFVGDSLNRNMWE-SLVCILRNSI 334
           D +ERL+    GKK+  V DS+ R+ WE SL C+ R  +
Sbjct: 196 DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGL 234


>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2
           Enoyl Coa Isomerase (Peci)
 pdb|2F6Q|B Chain B, The Crystal Structure Of Human Peroxisomal Delta3, Delta2
           Enoyl Coa Isomerase (Peci)
 pdb|2F6Q|C Chain C, The Crystal Structure Of Human Peroxisomal Delta3, Delta2
           Enoyl Coa Isomerase (Peci)
          Length = 280

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 230 EPTKMHGSSYDKCNIFDGRWVRDD 253
           E  K+H  + ++CN+  GRW+ D+
Sbjct: 242 EREKLHAVNAEECNVLQGRWLSDE 265


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,926,406
Number of Sequences: 62578
Number of extensions: 854585
Number of successful extensions: 1805
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1802
Number of HSP's gapped (non-prelim): 5
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)