Query 007773
Match_columns 590
No_of_seqs 399 out of 2311
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 15:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381 Phosphatidylinositol 4 100.0 2.7E-65 5.9E-70 520.8 11.0 280 260-560 2-285 (286)
2 TIGR03843 conserved hypothetic 100.0 1.3E-45 2.8E-50 364.6 15.8 198 273-521 10-235 (253)
3 cd01802 AN1_N ubiquitin-like d 99.7 3E-16 6.6E-21 139.3 9.5 92 91-184 9-100 (103)
4 cd01807 GDX_N ubiquitin-like d 99.6 2.4E-15 5.3E-20 125.2 7.9 73 110-184 1-73 (74)
5 cd01793 Fubi Fubi ubiquitin-li 99.6 6.8E-15 1.5E-19 122.6 7.9 74 34-109 1-74 (74)
6 cd01802 AN1_N ubiquitin-like d 99.6 8.6E-15 1.9E-19 130.0 8.7 78 31-109 25-103 (103)
7 cd01807 GDX_N ubiquitin-like d 99.6 7.5E-15 1.6E-19 122.3 7.7 72 34-106 1-73 (74)
8 PTZ00044 ubiquitin; Provisiona 99.6 8.9E-15 1.9E-19 122.0 8.1 75 34-109 1-76 (76)
9 cd01793 Fubi Fubi ubiquitin-li 99.5 3.2E-14 6.9E-19 118.6 7.9 71 110-184 1-71 (74)
10 cd01797 NIRF_N amino-terminal 99.5 3.3E-14 7.2E-19 120.1 7.9 74 110-185 1-76 (78)
11 cd01797 NIRF_N amino-terminal 99.5 4.1E-14 9E-19 119.5 7.3 73 34-107 1-76 (78)
12 PTZ00044 ubiquitin; Provisiona 99.5 6.4E-14 1.4E-18 116.8 8.3 73 110-184 1-73 (76)
13 cd01798 parkin_N amino-termina 99.5 5.2E-14 1.1E-18 115.9 7.6 70 112-183 1-70 (70)
14 cd01806 Nedd8 Nebb8-like ubiq 99.5 7.5E-14 1.6E-18 115.8 8.3 75 34-109 1-76 (76)
15 cd01810 ISG15_repeat2 ISG15 ub 99.5 5.5E-14 1.2E-18 117.2 7.1 73 36-109 1-74 (74)
16 cd01803 Ubiquitin Ubiquitin. U 99.5 7.5E-14 1.6E-18 115.8 7.9 75 34-109 1-76 (76)
17 cd01810 ISG15_repeat2 ISG15 ub 99.5 1.1E-13 2.3E-18 115.4 8.2 71 112-184 1-71 (74)
18 cd01805 RAD23_N Ubiquitin-like 99.5 1.3E-13 2.9E-18 115.1 8.7 76 110-185 1-76 (77)
19 KOG0003 Ubiquitin/60s ribosoma 99.5 6.2E-15 1.3E-19 128.6 0.4 75 34-109 1-76 (128)
20 cd01804 midnolin_N Ubiquitin-l 99.4 2.5E-13 5.4E-18 114.6 8.4 75 33-109 1-76 (78)
21 cd01806 Nedd8 Nebb8-like ubiq 99.4 3E-13 6.5E-18 112.2 8.5 74 110-185 1-74 (76)
22 cd01791 Ubl5 UBL5 ubiquitin-li 99.4 2.2E-13 4.9E-18 113.7 7.7 71 33-104 1-72 (73)
23 cd01794 DC_UbP_C dendritic cel 99.4 2.3E-13 5E-18 112.6 7.5 69 112-182 1-69 (70)
24 cd01791 Ubl5 UBL5 ubiquitin-li 99.4 2.2E-13 4.7E-18 113.7 7.0 70 110-181 2-71 (73)
25 cd01803 Ubiquitin Ubiquitin. U 99.4 3.7E-13 8E-18 111.7 8.2 74 110-185 1-74 (76)
26 cd01798 parkin_N amino-termina 99.4 2.4E-13 5.1E-18 112.0 6.8 69 36-105 1-70 (70)
27 cd01809 Scythe_N Ubiquitin-lik 99.4 4.2E-13 9.2E-18 110.2 7.9 72 110-183 1-72 (72)
28 cd01794 DC_UbP_C dendritic cel 99.4 3.6E-13 7.9E-18 111.5 6.6 67 37-104 2-69 (70)
29 KOG0005 Ubiquitin-like protein 99.4 1.6E-13 3.4E-18 107.9 3.9 69 34-103 1-70 (70)
30 cd01805 RAD23_N Ubiquitin-like 99.4 7.4E-13 1.6E-17 110.6 8.0 72 34-106 1-75 (77)
31 cd01809 Scythe_N Ubiquitin-lik 99.4 7.1E-13 1.5E-17 108.8 7.7 71 34-105 1-72 (72)
32 cd01792 ISG15_repeat1 ISG15 ub 99.4 5.7E-13 1.2E-17 112.8 6.7 74 110-185 3-78 (80)
33 cd01804 midnolin_N Ubiquitin-l 99.4 9.3E-13 2E-17 111.2 7.8 72 110-184 2-73 (78)
34 KOG0004 Ubiquitin/40S ribosoma 99.4 1.9E-13 4.2E-18 127.3 3.6 76 34-110 1-77 (156)
35 cd01808 hPLIC_N Ubiquitin-like 99.4 1.1E-12 2.3E-17 108.5 7.5 71 110-183 1-71 (71)
36 PF00240 ubiquitin: Ubiquitin 99.4 2.2E-12 4.7E-17 105.4 8.7 68 115-184 1-68 (69)
37 cd01800 SF3a120_C Ubiquitin-li 99.4 1.3E-12 2.9E-17 109.5 7.2 70 39-109 4-73 (76)
38 cd01792 ISG15_repeat1 ISG15 ub 99.3 2.2E-12 4.8E-17 109.2 7.6 71 34-105 3-76 (80)
39 cd01808 hPLIC_N Ubiquitin-like 99.3 2.2E-12 4.7E-17 106.6 7.1 70 34-105 1-71 (71)
40 cd01796 DDI1_N DNA damage indu 99.3 2.9E-12 6.2E-17 106.2 7.3 68 112-181 1-70 (71)
41 cd01796 DDI1_N DNA damage indu 99.3 2.6E-12 5.6E-17 106.5 6.9 67 36-103 1-70 (71)
42 KOG0003 Ubiquitin/60s ribosoma 99.3 1.8E-13 3.9E-18 119.5 -0.6 72 110-183 1-72 (128)
43 KOG0005 Ubiquitin-like protein 99.3 1.1E-12 2.5E-17 103.1 3.7 70 110-181 1-70 (70)
44 PF00240 ubiquitin: Ubiquitin 99.3 5.6E-12 1.2E-16 103.0 7.9 67 39-106 2-68 (69)
45 KOG0004 Ubiquitin/40S ribosoma 99.3 2.2E-12 4.8E-17 120.2 4.2 72 110-183 1-72 (156)
46 cd01812 BAG1_N Ubiquitin-like 99.3 1.6E-11 3.5E-16 100.7 7.7 70 34-104 1-70 (71)
47 cd01790 Herp_N Homocysteine-re 99.2 1.2E-11 2.5E-16 104.7 6.7 72 110-182 2-78 (79)
48 cd01763 Sumo Small ubiquitin-r 99.2 3E-11 6.5E-16 104.0 9.1 79 30-109 8-87 (87)
49 cd01813 UBP_N UBP ubiquitin pr 99.2 2.7E-11 5.8E-16 101.4 8.0 69 34-103 1-72 (74)
50 cd01812 BAG1_N Ubiquitin-like 99.2 2.5E-11 5.5E-16 99.5 7.1 70 110-182 1-70 (71)
51 cd01800 SF3a120_C Ubiquitin-li 99.2 3.3E-11 7.1E-16 101.1 7.8 67 117-185 5-71 (76)
52 cd01790 Herp_N Homocysteine-re 99.2 3.4E-11 7.4E-16 101.9 6.5 71 33-104 1-78 (79)
53 cd01799 Hoil1_N Ubiquitin-like 99.2 7.4E-11 1.6E-15 99.0 7.4 69 35-104 2-74 (75)
54 cd01763 Sumo Small ubiquitin-r 99.1 1.5E-10 3.2E-15 99.7 8.7 76 107-184 9-84 (87)
55 TIGR00601 rad23 UV excision re 99.1 9.5E-11 2.1E-15 125.9 8.8 76 110-187 1-79 (378)
56 cd01815 BMSC_UbP_N Ubiquitin-l 99.1 1.5E-10 3.2E-15 96.9 4.9 55 49-104 16-74 (75)
57 cd01813 UBP_N UBP ubiquitin pr 99.1 3.3E-10 7.2E-15 94.8 7.1 69 110-181 1-72 (74)
58 smart00213 UBQ Ubiquitin homol 99.0 4.6E-10 1E-14 89.4 6.7 63 34-98 1-64 (64)
59 smart00213 UBQ Ubiquitin homol 99.0 4.7E-10 1E-14 89.3 6.5 64 110-176 1-64 (64)
60 TIGR00601 rad23 UV excision re 99.0 4.6E-10 9.9E-15 120.6 7.5 72 34-106 1-76 (378)
61 cd01815 BMSC_UbP_N Ubiquitin-l 99.0 4.1E-10 8.8E-15 94.3 5.5 54 128-182 19-74 (75)
62 PF00454 PI3_PI4_kinase: Phosp 99.0 2.5E-12 5.4E-17 129.0 -11.0 159 326-500 28-203 (235)
63 cd01799 Hoil1_N Ubiquitin-like 98.9 2.1E-09 4.5E-14 90.3 6.6 64 116-182 9-74 (75)
64 cd01795 USP48_C USP ubiquitin- 98.9 2E-09 4.4E-14 93.7 6.0 63 44-106 16-78 (107)
65 cd01814 NTGP5 Ubiquitin-like N 98.9 1.7E-09 3.7E-14 96.6 5.2 76 110-185 5-92 (113)
66 cd01769 UBL Ubiquitin-like dom 98.8 1.5E-08 3.3E-13 81.6 7.3 67 114-182 2-68 (69)
67 cd01814 NTGP5 Ubiquitin-like N 98.8 5.3E-09 1.2E-13 93.5 4.9 75 32-107 3-92 (113)
68 KOG0010 Ubiquitin-like protein 98.8 6.6E-09 1.4E-13 112.6 6.3 74 109-185 15-88 (493)
69 PF11976 Rad60-SLD: Ubiquitin- 98.8 2.8E-08 6E-13 81.9 7.6 71 110-182 1-72 (72)
70 KOG0010 Ubiquitin-like protein 98.7 1.3E-08 2.8E-13 110.3 6.5 75 32-107 14-88 (493)
71 KOG0011 Nucleotide excision re 98.7 2.2E-08 4.8E-13 103.8 7.8 77 110-186 1-77 (340)
72 cd01769 UBL Ubiquitin-like dom 98.7 3.4E-08 7.4E-13 79.6 6.9 65 39-104 4-68 (69)
73 KOG0011 Nucleotide excision re 98.7 1.8E-08 3.8E-13 104.5 6.2 73 34-107 1-76 (340)
74 cd01789 Alp11_N Ubiquitin-like 98.7 6.8E-08 1.5E-12 82.8 8.8 70 34-103 2-79 (84)
75 cd01795 USP48_C USP ubiquitin- 98.7 3.5E-08 7.6E-13 86.1 6.6 62 120-183 15-77 (107)
76 PF11976 Rad60-SLD: Ubiquitin- 98.7 7E-08 1.5E-12 79.5 7.6 70 34-104 1-72 (72)
77 KOG0001 Ubiquitin and ubiquiti 98.6 1.8E-07 4E-12 74.9 7.8 71 36-107 2-73 (75)
78 KOG0001 Ubiquitin and ubiquiti 98.6 3.8E-07 8.2E-12 73.0 8.8 72 112-185 2-73 (75)
79 PF14560 Ubiquitin_2: Ubiquiti 98.4 1.5E-06 3.2E-11 74.7 8.3 70 34-103 2-81 (87)
80 KOG3829 Uncharacterized conser 98.3 2E-06 4.3E-11 91.4 8.8 169 257-459 151-390 (486)
81 cd01789 Alp11_N Ubiquitin-like 98.2 5.9E-06 1.3E-10 70.8 8.1 64 119-184 12-82 (84)
82 cd01788 ElonginB Ubiquitin-lik 98.1 6E-06 1.3E-10 74.0 6.9 74 34-108 3-83 (119)
83 PF13881 Rad60-SLD_2: Ubiquiti 98.1 1.9E-05 4.1E-10 71.3 10.0 78 110-187 3-92 (111)
84 PLN02560 enoyl-CoA reductase 98.0 9.1E-06 2E-10 85.7 7.1 68 34-102 1-80 (308)
85 KOG4248 Ubiquitin-like protein 98.0 5E-06 1.1E-10 96.7 5.5 70 36-107 5-75 (1143)
86 PLN02560 enoyl-CoA reductase 98.0 9.5E-06 2.1E-10 85.5 7.0 70 110-180 1-80 (308)
87 cd01788 ElonginB Ubiquitin-lik 98.0 1.6E-05 3.5E-10 71.2 6.9 63 121-185 13-82 (119)
88 KOG4248 Ubiquitin-like protein 98.0 7.7E-06 1.7E-10 95.2 6.1 72 111-185 4-75 (1143)
89 PF14560 Ubiquitin_2: Ubiquiti 97.9 3.9E-05 8.6E-10 65.9 7.1 71 112-184 4-84 (87)
90 PF13881 Rad60-SLD_2: Ubiquiti 97.9 6.6E-05 1.4E-09 67.9 8.4 74 33-107 2-90 (111)
91 cd00196 UBQ Ubiquitin-like pro 97.7 0.00015 3.2E-09 54.7 7.4 64 117-182 5-68 (69)
92 PF11543 UN_NPL4: Nuclear pore 97.6 8.9E-05 1.9E-09 63.2 5.4 73 31-103 2-78 (80)
93 cd00196 UBQ Ubiquitin-like pro 97.6 0.00021 4.6E-09 53.8 6.6 63 41-104 6-68 (69)
94 cd01801 Tsc13_N Ubiquitin-like 97.5 0.0002 4.4E-09 60.1 6.4 53 127-180 20-74 (77)
95 PF11543 UN_NPL4: Nuclear pore 97.5 0.00013 2.7E-09 62.2 4.5 71 108-181 3-78 (80)
96 cd01801 Tsc13_N Ubiquitin-like 97.5 0.00025 5.5E-09 59.6 5.8 52 50-102 20-74 (77)
97 cd01811 OASL_repeat1 2'-5' oli 97.5 0.00043 9.3E-09 57.7 6.9 70 34-104 1-75 (80)
98 KOG0006 E3 ubiquitin-protein l 97.0 0.001 2.3E-08 69.0 6.1 69 34-103 1-73 (446)
99 KOG0006 E3 ubiquitin-protein l 97.0 0.001 2.2E-08 69.1 5.5 66 119-186 13-78 (446)
100 cd01811 OASL_repeat1 2'-5' oli 96.9 0.0027 5.8E-08 53.0 6.6 70 110-182 1-75 (80)
101 KOG3493 Ubiquitin-like protein 96.6 0.00084 1.8E-08 54.4 1.5 68 35-103 3-71 (73)
102 cd05167 PI4Kc_III_alpha Phosph 96.3 0.024 5.2E-07 60.1 10.0 144 415-582 152-295 (311)
103 KOG4495 RNA polymerase II tran 96.2 0.012 2.5E-07 51.5 5.7 62 34-95 3-65 (110)
104 PF07804 HipA_C: HipA-like C-t 96.0 0.0018 3.9E-08 54.6 0.2 38 412-450 40-77 (79)
105 KOG3493 Ubiquitin-like protein 96.0 0.0028 6.1E-08 51.4 1.0 68 111-180 3-70 (73)
106 cd00893 PI4Kc_III Phosphoinosi 95.8 0.087 1.9E-06 55.4 11.3 142 415-582 131-273 (289)
107 KOG0906 Phosphatidylinositol 3 95.7 0.085 1.8E-06 60.0 11.5 143 413-582 684-827 (843)
108 KOG1872 Ubiquitin-specific pro 95.6 0.024 5.2E-07 62.2 6.4 71 35-106 5-76 (473)
109 PF06702 DUF1193: Protein of u 95.5 0.031 6.7E-07 56.2 6.6 72 414-489 91-163 (221)
110 KOG1769 Ubiquitin-like protein 95.3 0.12 2.7E-06 45.6 8.7 75 110-186 21-95 (99)
111 cd05168 PI4Kc_III_beta Phospho 95.0 0.18 4E-06 53.1 10.8 141 415-581 133-276 (293)
112 cd00891 PI3Kc Phosphoinositide 95.0 0.14 2.9E-06 55.4 10.0 144 414-582 194-339 (352)
113 KOG4495 RNA polymerase II tran 94.9 0.038 8.3E-07 48.4 4.4 51 120-172 12-64 (110)
114 cd00895 PI3Kc_C2_beta Phosphoi 94.6 0.32 7E-06 52.5 11.5 146 414-581 194-340 (354)
115 KOG1872 Ubiquitin-specific pro 94.4 0.071 1.5E-06 58.6 6.1 72 112-186 6-78 (473)
116 PF11470 TUG-UBL1: GLUT4 regul 94.3 0.14 3E-06 42.1 6.3 62 117-180 4-65 (65)
117 cd00896 PI3Kc_III Phosphoinosi 94.2 0.34 7.4E-06 52.3 10.9 140 414-582 193-335 (350)
118 PF13019 Telomere_Sde2: Telome 94.1 0.16 3.4E-06 49.0 7.1 76 34-109 1-88 (162)
119 PF08817 YukD: WXG100 protein 93.9 0.12 2.7E-06 43.5 5.5 72 110-181 3-79 (79)
120 PF11470 TUG-UBL1: GLUT4 regul 93.7 0.19 4.1E-06 41.3 5.8 63 39-102 3-65 (65)
121 KOG1769 Ubiquitin-like protein 93.6 0.47 1E-05 42.0 8.5 77 32-109 19-96 (99)
122 KOG0013 Uncharacterized conser 93.4 0.098 2.1E-06 52.0 4.4 66 35-101 149-214 (231)
123 PF10302 DUF2407: DUF2407 ubiq 93.3 0.15 3.3E-06 45.1 5.1 50 121-170 13-64 (97)
124 PF08817 YukD: WXG100 protein 93.3 0.22 4.7E-06 42.0 5.9 68 34-102 3-78 (79)
125 cd05174 PI3Kc_IA_delta Phospho 93.3 0.49 1.1E-05 51.3 9.9 143 415-581 200-346 (361)
126 KOG3206 Alpha-tubulin folding 92.9 0.2 4.3E-06 49.8 5.7 71 34-104 2-80 (234)
127 cd05166 PI3Kc_II Phosphoinosit 92.7 0.72 1.6E-05 49.9 10.2 41 414-458 193-233 (353)
128 PF00789 UBX: UBX domain; Int 92.7 0.48 1.1E-05 39.8 7.2 72 31-102 4-80 (82)
129 cd05177 PI3Kc_C2_gamma Phospho 92.6 0.93 2E-05 49.1 10.8 42 414-459 194-235 (354)
130 PF00789 UBX: UBX domain; Int 92.0 0.8 1.7E-05 38.4 7.6 69 110-180 7-80 (82)
131 cd05173 PI3Kc_IA_beta Phosphoi 91.9 0.77 1.7E-05 49.8 9.3 41 414-458 199-239 (362)
132 cd05176 PI3Kc_C2_alpha Phospho 91.8 1.2 2.6E-05 48.2 10.4 42 414-459 193-234 (353)
133 PF13019 Telomere_Sde2: Telome 90.9 0.92 2E-05 43.8 7.6 72 110-183 1-84 (162)
134 cd00894 PI3Kc_IB_gamma Phospho 90.8 1.3 2.9E-05 48.0 9.7 140 415-581 204-350 (365)
135 PF10302 DUF2407: DUF2407 ubiq 90.6 0.56 1.2E-05 41.6 5.4 47 45-92 14-64 (97)
136 cd05165 PI3Kc_I Phosphoinositi 90.5 1.3 2.9E-05 48.1 9.3 144 414-581 203-351 (366)
137 smart00166 UBX Domain present 90.3 1.4 3E-05 37.1 7.5 71 32-102 3-78 (80)
138 cd01770 p47_UBX p47-like ubiqu 89.9 1.5 3.3E-05 37.2 7.4 68 33-100 4-75 (79)
139 PF09192 Act-Frag_cataly: Acti 89.7 0.3 6.4E-06 51.0 3.5 139 274-455 32-208 (275)
140 KOG0013 Uncharacterized conser 89.6 0.73 1.6E-05 46.0 5.8 62 117-180 154-215 (231)
141 COG5417 Uncharacterized small 89.4 1.7 3.6E-05 36.7 6.9 69 33-102 4-80 (81)
142 PF14533 USP7_C2: Ubiquitin-sp 88.3 3.8 8.2E-05 41.1 10.2 112 32-146 19-159 (213)
143 smart00166 UBX Domain present 88.2 1.9 4.1E-05 36.3 6.8 69 110-180 5-78 (80)
144 cd01770 p47_UBX p47-like ubiqu 87.8 2.1 4.5E-05 36.4 6.8 69 110-179 5-76 (79)
145 cd05124 AFK Actin-Fragmin Kina 87.7 0.53 1.1E-05 48.0 3.6 61 391-452 94-172 (238)
146 cd05175 PI3Kc_IA_alpha Phospho 87.4 4.4 9.6E-05 44.1 10.6 42 414-459 202-243 (366)
147 PF09379 FERM_N: FERM N-termin 87.1 3.4 7.5E-05 34.2 7.7 63 114-177 1-69 (80)
148 PF14836 Ubiquitin_3: Ubiquiti 86.9 3.2 6.9E-05 36.2 7.4 66 43-109 14-84 (88)
149 KOG0903 Phosphatidylinositol 4 86.2 0.7 1.5E-05 53.7 3.9 68 415-491 687-754 (847)
150 cd01767 UBX UBX (ubiquitin reg 85.7 3.9 8.4E-05 34.1 7.3 64 34-98 3-71 (77)
151 KOG1639 Steroid reductase requ 84.3 1.6 3.4E-05 44.8 5.0 69 110-180 1-76 (297)
152 cd06407 PB1_NLP A PB1 domain i 83.9 4.2 9.1E-05 34.9 6.8 48 34-81 1-49 (82)
153 KOG1639 Steroid reductase requ 83.9 1.6 3.4E-05 44.8 4.8 66 34-100 1-74 (297)
154 COG5417 Uncharacterized small 83.8 4.6 9.9E-05 34.2 6.6 67 114-180 11-80 (81)
155 cd01772 SAKS1_UBX SAKS1-like U 82.9 5.7 0.00012 33.5 7.2 67 111-180 6-77 (79)
156 PF15044 CLU_N: Mitochondrial 82.6 2.2 4.7E-05 36.0 4.5 57 126-183 1-58 (76)
157 cd01772 SAKS1_UBX SAKS1-like U 82.1 5.7 0.00012 33.5 6.9 69 33-102 4-77 (79)
158 PTZ00303 phosphatidylinositol 82.0 0.55 1.2E-05 54.5 0.8 43 413-459 1135-1177(1374)
159 PF11620 GABP-alpha: GA-bindin 81.0 4.2 9E-05 35.3 5.6 60 44-104 4-63 (88)
160 cd01767 UBX UBX (ubiquitin reg 80.5 8.1 0.00018 32.1 7.2 65 111-178 4-73 (77)
161 COG5227 SMT3 Ubiquitin-like pr 80.3 5.9 0.00013 34.7 6.3 69 110-180 25-93 (103)
162 cd01774 Faf1_like2_UBX Faf1 ik 80.0 8.8 0.00019 33.1 7.4 69 109-180 4-82 (85)
163 cd01774 Faf1_like2_UBX Faf1 ik 79.2 11 0.00023 32.6 7.6 70 32-102 3-82 (85)
164 cd00142 PI3Kc_like Phosphoinos 78.7 1.3 2.8E-05 44.6 2.1 67 414-488 119-185 (219)
165 KOG4583 Membrane-associated ER 78.7 0.73 1.6E-05 48.9 0.4 71 111-181 11-85 (391)
166 PF11620 GABP-alpha: GA-bindin 78.4 7.2 0.00016 33.8 6.2 61 121-183 4-64 (88)
167 PRK09775 putative DNA-binding 78.3 0.94 2E-05 50.5 1.1 41 412-452 327-368 (442)
168 cd06406 PB1_P67 A PB1 domain i 77.2 9.1 0.0002 32.8 6.5 47 34-81 3-49 (80)
169 cd01771 Faf1_UBX Faf1 UBX doma 77.0 14 0.00031 31.4 7.7 70 32-102 3-77 (80)
170 KOG0012 DNA damage inducible p 76.7 3.2 6.9E-05 44.7 4.4 76 34-109 1-80 (380)
171 COG5227 SMT3 Ubiquitin-like pr 76.5 8.7 0.00019 33.7 6.2 72 32-104 23-95 (103)
172 PF15044 CLU_N: Mitochondrial 76.3 4.1 8.9E-05 34.4 4.2 57 49-106 1-59 (76)
173 smart00146 PI3Kc Phosphoinosit 76.2 1.1 2.4E-05 44.4 0.8 43 414-460 92-134 (202)
174 cd05169 PIKKc_TOR TOR (Target 75.9 1.6 3.4E-05 45.5 1.9 42 413-457 171-212 (280)
175 PF15051 FAM198: FAM198 protei 75.7 7.3 0.00016 41.2 6.6 90 330-430 73-187 (326)
176 cd01773 Faf1_like1_UBX Faf1 ik 75.3 17 0.00036 31.3 7.7 71 32-103 4-79 (82)
177 smart00666 PB1 PB1 domain. Pho 73.4 16 0.00035 30.3 7.1 47 34-80 2-48 (81)
178 cd05172 PIKKc_DNA-PK DNA-depen 72.8 2.7 5.8E-05 42.9 2.7 44 414-460 127-170 (235)
179 PF12436 USP7_ICP0_bdg: ICP0-b 72.4 14 0.00031 38.0 7.9 122 31-155 66-223 (249)
180 KOG1235 Predicted unusual prot 70.8 2.8 6.1E-05 47.8 2.5 40 420-459 317-356 (538)
181 KOG0902 Phosphatidylinositol 4 70.0 1.6 3.5E-05 54.0 0.4 42 415-460 1644-1685(1803)
182 KOG0904 Phosphatidylinositol 3 69.9 3.7 8.1E-05 48.7 3.2 37 418-458 918-954 (1076)
183 cd05171 PIKKc_ATM Ataxia telan 69.3 2.9 6.3E-05 43.7 2.1 44 413-459 171-214 (279)
184 COG0661 AarF Predicted unusual 69.0 10 0.00022 43.2 6.5 93 423-532 284-376 (517)
185 KOG3206 Alpha-tubulin folding 68.6 14 0.0003 37.2 6.4 65 122-188 15-86 (234)
186 cd00892 PIKKc_ATR ATR (Ataxia 67.9 3 6.5E-05 42.6 1.8 43 414-459 130-172 (237)
187 PRK08364 sulfur carrier protei 67.1 27 0.00058 28.7 7.0 63 36-108 5-69 (70)
188 cd01773 Faf1_like1_UBX Faf1 ik 67.0 29 0.00062 29.9 7.3 68 111-181 7-79 (82)
189 PF00564 PB1: PB1 domain; Int 64.2 26 0.00057 29.1 6.6 48 33-80 1-49 (84)
190 PRK06488 sulfur carrier protei 64.2 26 0.00056 28.1 6.3 63 37-108 2-64 (65)
191 PF09379 FERM_N: FERM N-termin 62.9 42 0.00091 27.6 7.5 56 39-95 3-65 (80)
192 KOG0012 DNA damage inducible p 61.5 11 0.00024 40.7 4.5 73 118-192 11-85 (380)
193 KOG4250 TANK binding protein k 61.5 17 0.00038 42.5 6.4 48 34-81 314-363 (732)
194 PF08337 Plexin_cytopl: Plexin 60.6 12 0.00026 42.8 4.9 79 31-109 187-293 (539)
195 cd00754 MoaD Ubiquitin domain 59.8 29 0.00063 28.5 6.0 61 43-109 16-80 (80)
196 KOG0905 Phosphoinositide 3-kin 59.8 7.5 0.00016 47.7 3.2 37 418-458 1191-1227(1639)
197 PRK06437 hypothetical protein; 59.2 40 0.00087 27.6 6.6 61 38-108 5-66 (67)
198 cd05164 PIKKc Phosphoinositide 58.7 5.5 0.00012 40.2 1.7 43 414-459 122-164 (222)
199 cd05170 PIKKc_SMG1 Suppressor 58.1 6.1 0.00013 41.9 2.0 43 413-458 199-241 (307)
200 cd06406 PB1_P67 A PB1 domain i 57.3 28 0.00061 29.9 5.4 38 121-160 12-49 (80)
201 cd01771 Faf1_UBX Faf1 UBX doma 57.0 50 0.0011 28.1 7.0 68 110-180 5-77 (80)
202 smart00295 B41 Band 4.1 homolo 56.2 59 0.0013 31.2 8.4 61 110-171 4-70 (207)
203 cd06398 PB1_Joka2 The PB1 doma 55.2 48 0.001 29.0 6.8 46 35-80 2-53 (91)
204 cd06408 PB1_NoxR The PB1 domai 55.0 62 0.0013 28.2 7.3 47 33-80 2-48 (86)
205 smart00455 RBD Raf-like Ras-bi 54.7 28 0.0006 28.9 4.9 43 114-158 4-46 (70)
206 cd01760 RBD Ubiquitin-like dom 53.3 28 0.0006 29.2 4.8 44 113-158 3-46 (72)
207 cd01760 RBD Ubiquitin-like dom 52.9 38 0.00082 28.4 5.5 45 36-80 2-47 (72)
208 smart00295 B41 Band 4.1 homolo 52.3 92 0.002 29.9 9.1 39 32-70 2-41 (207)
209 cd05992 PB1 The PB1 domain is 51.5 49 0.0011 27.2 6.1 46 35-80 2-48 (81)
210 smart00455 RBD Raf-like Ras-bi 51.2 42 0.00091 27.8 5.5 43 37-79 3-46 (70)
211 cd06409 PB1_MUG70 The MUG70 pr 50.8 34 0.00073 29.8 5.0 35 112-146 3-37 (86)
212 PRK06437 hypothetical protein; 49.7 86 0.0019 25.6 7.1 54 118-182 9-62 (67)
213 PRK06083 sulfur carrier protei 49.3 90 0.002 26.9 7.4 70 31-108 14-83 (84)
214 cd00754 MoaD Ubiquitin domain 49.2 66 0.0014 26.3 6.5 56 121-181 17-74 (80)
215 cd06407 PB1_NLP A PB1 domain i 48.9 65 0.0014 27.6 6.5 47 113-160 2-49 (82)
216 PRK05863 sulfur carrier protei 48.5 62 0.0013 26.1 6.0 63 37-108 2-64 (65)
217 PHA02537 M terminase endonucle 47.5 4.9 0.00011 41.1 -0.7 63 447-519 107-179 (230)
218 cd06396 PB1_NBR1 The PB1 domai 47.3 69 0.0015 27.6 6.3 41 35-77 2-44 (81)
219 PF10790 DUF2604: Protein of U 46.4 69 0.0015 26.5 5.8 68 117-184 3-72 (76)
220 PF12754 Blt1: Cell-cycle cont 46.3 6.6 0.00014 41.6 0.0 65 30-95 75-160 (309)
221 cd06409 PB1_MUG70 The MUG70 pr 46.1 50 0.0011 28.7 5.3 39 39-77 7-48 (86)
222 KOG0608 Warts/lats-like serine 45.6 16 0.00034 42.7 2.8 38 412-458 742-779 (1034)
223 PRK05659 sulfur carrier protei 45.4 97 0.0021 24.7 6.7 63 38-108 3-65 (66)
224 PF14453 ThiS-like: ThiS-like 45.4 72 0.0016 25.7 5.7 54 110-181 1-54 (57)
225 KOG4250 TANK binding protein k 45.3 55 0.0012 38.6 7.1 69 117-189 322-392 (732)
226 smart00666 PB1 PB1 domain. Pho 44.3 64 0.0014 26.6 5.7 40 118-159 9-48 (81)
227 PF10790 DUF2604: Protein of U 43.4 71 0.0015 26.4 5.4 65 40-105 3-71 (76)
228 PRK07440 hypothetical protein; 42.5 1.3E+02 0.0029 24.7 7.2 65 36-108 5-69 (70)
229 KOG2086 Protein tyrosine phosp 42.4 39 0.00084 37.0 5.0 67 33-100 307-376 (380)
230 smart00144 PI3K_rbd PI3-kinase 41.3 1.2E+02 0.0025 27.3 7.2 67 119-185 28-106 (108)
231 PRK08364 sulfur carrier protei 40.4 1.4E+02 0.0029 24.5 6.9 50 121-181 15-64 (70)
232 cd05163 TRRAP TRansformation/t 39.5 18 0.00038 37.4 1.9 42 414-458 145-186 (253)
233 PF02505 MCR_D: Methyl-coenzym 39.3 2.2E+02 0.0049 27.4 9.0 111 44-171 5-121 (153)
234 PLN02799 Molybdopterin synthas 39.1 98 0.0021 25.8 6.1 61 43-109 19-82 (82)
235 PF08337 Plexin_cytopl: Plexin 38.9 63 0.0014 37.2 6.2 67 119-185 201-291 (539)
236 TIGR01687 moaD_arch MoaD famil 38.6 1.4E+02 0.003 25.1 7.0 62 43-109 16-88 (88)
237 TIGR01682 moaD molybdopterin c 38.4 1.1E+02 0.0025 25.3 6.4 61 43-109 16-80 (80)
238 smart00144 PI3K_rbd PI3-kinase 38.4 1.9E+02 0.0041 25.8 8.1 75 31-106 15-105 (108)
239 cd00565 ThiS ThiaminS ubiquiti 38.2 80 0.0017 25.3 5.2 63 39-109 3-65 (65)
240 PF14836 Ubiquitin_3: Ubiquiti 37.7 2.3E+02 0.005 24.8 8.1 62 120-184 14-81 (88)
241 KOG0007 Splicing factor 3a, su 37.4 17 0.00037 39.2 1.4 58 31-89 279-339 (341)
242 PF14453 ThiS-like: ThiS-like 36.8 90 0.002 25.1 5.1 55 34-104 1-55 (57)
243 COG5100 NPL4 Nuclear pore prot 36.3 1.3E+02 0.0028 33.4 7.6 72 110-182 1-78 (571)
244 KOG4583 Membrane-associated ER 34.1 16 0.00034 39.3 0.4 62 32-94 8-74 (391)
245 KOG2086 Protein tyrosine phosp 33.9 47 0.001 36.4 4.0 69 110-179 306-377 (380)
246 PRK06944 sulfur carrier protei 33.4 2E+02 0.0042 22.8 6.7 62 38-108 3-64 (65)
247 TIGR01683 thiS thiamine biosyn 33.0 1.2E+02 0.0026 24.2 5.4 62 39-108 2-63 (64)
248 PRK08053 sulfur carrier protei 32.7 2.1E+02 0.0046 23.0 6.8 63 38-108 3-65 (66)
249 PRK07696 sulfur carrier protei 32.0 2E+02 0.0044 23.4 6.6 64 37-108 2-66 (67)
250 COG2104 ThiS Sulfur transfer p 31.5 2.2E+02 0.0048 23.6 6.8 65 35-107 2-66 (68)
251 PF02597 ThiS: ThiS family; I 30.8 60 0.0013 26.3 3.4 62 117-181 10-71 (77)
252 PRK06488 sulfur carrier protei 30.7 1.9E+02 0.0041 23.1 6.2 56 117-182 5-60 (65)
253 cd06411 PB1_p51 The PB1 domain 30.3 1.5E+02 0.0033 25.4 5.7 35 44-78 8-42 (78)
254 PF02597 ThiS: ThiS family; I 29.6 1.6E+02 0.0034 23.8 5.7 63 44-109 13-77 (77)
255 PF02196 RBD: Raf-like Ras-bin 29.0 1.6E+02 0.0034 24.4 5.6 44 36-79 3-47 (71)
256 COG5032 TEL1 Phosphatidylinosi 28.4 27 0.00059 46.4 1.3 49 413-464 1932-1980(2105)
257 KOG3316 Transport protein part 28.0 19 0.00041 34.5 -0.1 59 280-344 94-152 (163)
258 PF00788 RA: Ras association ( 27.7 1.8E+02 0.0038 24.2 5.9 35 121-155 18-52 (93)
259 TIGR02958 sec_mycoba_snm4 secr 26.8 2.3E+02 0.005 31.9 8.1 75 34-109 3-84 (452)
260 PRK04750 ubiB putative ubiquin 26.8 37 0.0008 39.0 1.9 38 420-457 276-313 (537)
261 cd06397 PB1_UP1 Uncharacterize 26.7 1.8E+02 0.0039 25.2 5.5 46 35-80 2-47 (82)
262 KOG3439 Protein conjugation fa 26.4 2.3E+02 0.0051 25.9 6.4 50 32-81 29-83 (116)
263 PF14533 USP7_C2: Ubiquitin-sp 25.8 64 0.0014 32.4 3.2 40 32-71 114-161 (213)
264 TIGR01682 moaD molybdopterin c 25.8 3.4E+02 0.0073 22.4 7.1 56 121-181 17-74 (80)
265 PF02196 RBD: Raf-like Ras-bin 25.8 2.1E+02 0.0046 23.6 5.8 52 114-167 5-58 (71)
266 PF00794 PI3K_rbd: PI3-kinase 25.6 3.4E+02 0.0074 23.8 7.5 73 31-104 14-101 (106)
267 KOG4261 Talin [Cytoskeleton] 25.4 1.7E+02 0.0036 35.1 6.7 123 35-162 5-136 (1003)
268 cd06411 PB1_p51 The PB1 domain 25.1 1.2E+02 0.0026 26.0 4.2 37 120-158 7-43 (78)
269 KOG0892 Protein kinase ATM/Tel 25.1 40 0.00086 45.0 1.9 48 414-464 2616-2663(2806)
270 cd05992 PB1 The PB1 domain is 25.0 1.8E+02 0.0038 23.8 5.3 40 118-159 8-48 (81)
271 PF00794 PI3K_rbd: PI3-kinase 24.9 1.1E+02 0.0024 26.9 4.3 73 111-183 18-102 (106)
272 PF07924 NuiA: Nuclease A inhi 23.9 34 0.00074 32.1 0.8 38 452-491 16-53 (133)
273 cd01817 RGS12_RBD Ubiquitin do 23.4 2.1E+02 0.0045 24.3 5.2 41 40-80 7-47 (73)
274 PLN02799 Molybdopterin synthas 23.2 2.4E+02 0.0053 23.4 5.8 57 120-181 19-76 (82)
275 KOG4572 Predicted DNA-binding 22.9 1.9E+02 0.0041 34.9 6.5 79 118-198 3-85 (1424)
276 KOG2689 Predicted ubiquitin re 22.7 3.1E+02 0.0067 29.0 7.4 72 31-102 208-284 (290)
277 cd01768 RA RA (Ras-associating 22.5 2.2E+02 0.0047 23.8 5.4 37 119-155 12-48 (87)
278 PF07805 HipA_N: HipA-like N-t 22.0 74 0.0016 26.5 2.4 68 268-371 3-70 (81)
279 TIGR03260 met_CoM_red_D methyl 21.9 6.4E+02 0.014 24.3 8.7 112 44-172 4-120 (150)
280 PF04639 Baculo_E56: Baculovir 21.9 1.1E+02 0.0023 32.4 4.0 36 246-291 120-155 (305)
281 KOG2982 Uncharacterized conser 21.8 1.2E+02 0.0026 32.8 4.3 58 45-102 350-414 (418)
282 PF00564 PB1: PB1 domain; Int 21.7 2.7E+02 0.0058 22.8 5.8 39 118-158 9-48 (84)
283 PF08671 SinI: Anti-repressor 21.4 65 0.0014 22.6 1.6 22 516-537 6-27 (30)
284 cd01777 SNX27_RA Ubiquitin dom 21.1 1.8E+02 0.0039 25.5 4.5 41 34-74 2-43 (87)
285 cd01775 CYR1_RA Ubiquitin doma 20.5 4.1E+02 0.0089 23.8 6.7 37 34-70 3-40 (97)
286 TIGR01687 moaD_arch MoaD famil 20.4 4.4E+02 0.0096 22.0 6.9 57 121-181 17-82 (88)
No 1
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-65 Score=520.78 Aligned_cols=280 Identities=45% Similarity=0.749 Sum_probs=257.6
Q ss_pred HHHHHHHHcCCCCcccCCCCCcEEEEEeCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC-CcCCCccCCCchhh-hhh
Q 007773 260 SSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGE-GLKKGTRAGEGALR-EVA 337 (590)
Q Consensus 260 ~~~~~~~~~g~~p~~~~~Gs~Gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~-g~~~g~~~g~g~~r-EvA 337 (590)
.++..|++.|+.|++++.|++|+|||++..|. .+|||||+|||||+.+||+|+++...++ |+++|+++|+++.| |+|
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~-~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~a 80 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGW-IVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAA 80 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccc-eeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhh
Confidence 56788999999999999999999999999996 5999999999999999999999988655 89999999877777 999
Q ss_pred hhhhccCCCCcccccccccCCCCCCceEEEEecccCccCCCCCCC--CCCCccceEEeecccccCCcccCCCCCCChhhh
Q 007773 338 AYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKH--DLENVKIGSLQMFVENVGSCEEMGPRAFPVDEV 415 (590)
Q Consensus 338 AylLD~~~~~~~~~~~~~~gf~~VP~T~lv~~~~~~f~~~~~~~~--~~~~~k~GSlQ~fv~~~~~~~~~~~~~f~~~ev 415 (590)
||||||+ +|+.||+|.+++++|+.|||++++.. .....|+||+|+||++ .++.|++++.|+++|+
T Consensus 81 ayLlD~~------------~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~ 147 (286)
T KOG2381|consen 81 AYLLDHP------------EFNDVPRTALVKITHFTFNYNAAFLSKRQGKKSKIGSLQLFVEG-YSAADYGLRRFEAEEV 147 (286)
T ss_pred hhccCcc------------ccCCCCceeeEEEeeecccccccceecccccccchhhHHHhhcC-ccccceeEEecccccc
Confidence 9999985 89999999999999999999987532 2333799999999999 7888999999999999
Q ss_pred hheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChHHhHH
Q 007773 416 HKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIE 495 (590)
Q Consensus 416 ~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~~ 495 (590)
|||+||||||+|||||+|||||++..........+|||||||..+.+++|+|+|||||+.|||+++++|| |++..|.+
T Consensus 148 hkivvlD~ri~NtDRh~~N~lvk~~~~~~~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~ 225 (286)
T KOG2381|consen 148 HKIVVLDIRIRNTDRHAGNWLVKKEPTLEQAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCN 225 (286)
T ss_pred ceeEEEEEEeeccCCCCCceeEEeccCcccccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHH
Confidence 9999999999999999999999997444444666699999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCC
Q 007773 496 LLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLP 560 (590)
Q Consensus 496 ~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~ 560 (590)
++| +++++++++++++|+|+|+++++|||+.+||.+|+|+.+.. |.+|.+|.+|...+.+
T Consensus 226 ~~r----~l~~~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~-~~~~~~~~~~~~~~~~ 285 (286)
T KOG2381|consen 226 LLR----ELPEDLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD-SKLEQLCVEAKASVVE 285 (286)
T ss_pred HHH----HhHHHHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh-CccHHHHHhhhhcccC
Confidence 999 68899999999999999999999999999999999998877 9999999999876654
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=100.00 E-value=1.3e-45 Score=364.63 Aligned_cols=198 Identities=28% Similarity=0.414 Sum_probs=161.7
Q ss_pred cccCCCCCcEEEEEeC-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcCCCccCCCchhhhhhhhhhccCCCCcccc
Q 007773 273 IPSSEGSGGAYFMQDS-SGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSL 351 (590)
Q Consensus 273 ~~~~~Gs~Gsyf~~~~-~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~g~~~g~~~g~g~~rEvAAylLD~~~~~~~~~ 351 (590)
-++.++||+||+|.-. +|....|||||..+|.++|+||+ ||+ |.||+|||+||
T Consensus 10 gri~~aSN~t~~~~~~~~~~~~~~VYKPv~gErPLWDFpd-------------GtL----a~REvAAYlvs--------- 63 (253)
T TIGR03843 10 GRLVDASNATLLCEVTLGGVSARAVYKPVRGERPLWDFPD-------------GTL----AGREVAAYLVS--------- 63 (253)
T ss_pred EEEccccceeEEEEEecCCeeEEEEECCcCCccccccCCC-------------Cch----HHHHHHHHHHH---------
Confidence 4688999999999943 45567899999999999999998 788 99999999999
Q ss_pred cccccCCCCCCceEEEEecccCccCCCCCCCCCCCccceEEeecccccCC--------cccCCCCCCCh-----------
Q 007773 352 HDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGS--------CEEMGPRAFPV----------- 412 (590)
Q Consensus 352 ~~~~~gf~~VP~T~lv~~~~~~f~~~~~~~~~~~~~k~GSlQ~fv~~~~~--------~~~~~~~~f~~----------- 412 (590)
+++||++||+|+++ +| |.|+||+|.||+++.+ ++++++++|++
T Consensus 64 --~~lGw~~VPpTvlr----------DG------P~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v 125 (253)
T TIGR03843 64 --EALGWGLVPPTVLR----------DG------PFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPV 125 (253)
T ss_pred --HHhCCCcCCCeeee----------cC------CCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcce
Confidence 47899999999998 34 6899999999999754 56677888863
Q ss_pred -------hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHH
Q 007773 413 -------DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYI 485 (590)
Q Consensus 413 -------~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i 485 (590)
.++|||+|||++|+|+|||+||||+.++ |+ ++|||||||||++.+.+| ++|+|+++|||+++++||
T Consensus 126 ~l~h~d~~~l~riaVfDi~inNaDRk~GhiL~~~d--g~--l~~IDHGl~f~~~~klrt---vlW~wag~Pls~e~l~~i 198 (253)
T TIGR03843 126 VLVHADHPQLRRMAVFDALVNNADRKGGHVLPGPD--GR--VWGVDHGVCFHVEPKLRT---VLWGWAGEPLPAELLADL 198 (253)
T ss_pred eecccccHHHhhhhhheeeeecCCCCCCcEeEcCC--Cc--EEEecCceecCCCCcccc---cccccccCCCCHHHHHHH
Confidence 3599999999999999999999999986 65 999999999999866555 899999999999999999
Q ss_pred HccChHHhHHHHHhcCCCCC-HHHHHHHHHHHHHHHH
Q 007773 486 NALDAEKDIELLKFHGWDIP-PECARVLRISTMLLKK 521 (590)
Q Consensus 486 ~~Ld~~~d~~~l~~~~~~~~-~~~~~~l~~~t~~Lk~ 521 (590)
++|+.+.+-.+=++..-.|. +|...+.+.+..+|..
T Consensus 199 ~~L~~~l~~~l~~~L~~llt~~Ei~Al~~R~~~Ll~~ 235 (253)
T TIGR03843 199 ARLRDDLDGDLGRELAELLTPEEVAALRRRVDRLLET 235 (253)
T ss_pred HHHHHhhcChHHHHHHHhCCHHHHHHHHHHHHHHHhC
Confidence 99998885332222111133 4444555556666543
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.66 E-value=3e-16 Score=139.30 Aligned_cols=92 Identities=23% Similarity=0.269 Sum_probs=87.4
Q ss_pred ccCcccccceeEEeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCccccc
Q 007773 91 DYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI 170 (590)
Q Consensus 91 dygI~~gstL~LvlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy 170 (590)
-|.+.+-+++|+.+++++.|+|+||+..|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+++|++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIP--VAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHc
Confidence 45677788999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred CCCCCCEEEEEeec
Q 007773 171 CKRNEAVIHLLVRK 184 (590)
Q Consensus 171 ~I~~gsvI~L~vrk 184 (590)
+|+++++|||+++.
T Consensus 87 ~I~~~stL~l~~~l 100 (103)
T cd01802 87 NISEGCTLKLVLAM 100 (103)
T ss_pred CCCCCCEEEEEEec
Confidence 99999999999874
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.60 E-value=2.4e-15 Score=125.22 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=70.7
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
|+|+||+.+|+++.++|++++||++||++|+++.|++ +++|+|+|+|++|+|+++|++|+|+++++|+|++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVP--EEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999998 999999999999999999999999999999999874
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.57 E-value=6.8e-15 Score=122.65 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=69.2
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+|+|+. +++++++|++++||++||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|++++++|+++++.++
T Consensus 1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~-D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLE-DDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 7899943 478999999999999999999999999999999999999998 8999999999999999999998764
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.56 E-value=8.6e-15 Score=130.03 Aligned_cols=78 Identities=29% Similarity=0.536 Sum_probs=74.7
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.++|+|+| ++.|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++||++++++|+
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELE-DEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence 57899999 899999999999999999999999999999999999999999998 8999999999999999999998764
No 7
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.56 E-value=7.5e-15 Score=122.29 Aligned_cols=72 Identities=25% Similarity=0.470 Sum_probs=69.4
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
|+|+| +.+|++++++|++++||++||.+|+++.|+|+++|+|+|+|++|. |+.+|++|||+++++|||+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCHHHCCCCCCCEEEEEEcC
Confidence 79999 889999999999999999999999999999999999999999997 8999999999999999999874
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.56 E-value=8.9e-15 Score=122.00 Aligned_cols=75 Identities=23% Similarity=0.533 Sum_probs=72.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+|+| +++|+++++++++++||++||.+|++..|+|+.+|+|+|+|+.|. |+.+|++|++++++++|+++++.|+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence 79999 899999999999999999999999999999999999999999998 8999999999999999999998764
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.52 E-value=3.2e-14 Score=118.59 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=67.3
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
|+|+||+ +++++++|++++||++||++|+++.|+| +++|+|+|+|++|+|+++|++|+++++++||+++|.
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGID--VEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRL 71 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 6899998 4789999999999999999999999988 999999999999999999999999999999999874
No 10
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.51 E-value=3.3e-14 Score=120.09 Aligned_cols=74 Identities=26% Similarity=0.266 Sum_probs=69.9
Q ss_pred ccceeeecccee-eEEE-eecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKV-FEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~-~~i~-Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+||+.+|++ +.++ +++++||++||++|++..|++ +++|+|+|+|+.|+|+++|++|+++++++|+|++|..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999997 6895 899999999999999999988 9999999999999999999999999999999998854
No 11
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.50 E-value=4.1e-14 Score=119.50 Aligned_cols=73 Identities=15% Similarity=0.346 Sum_probs=69.0
Q ss_pred EEEEE-EeCCeE-EEEE-ecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 34 ILIFL-SVGGSV-IPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 34 M~I~V-tl~G~t-~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
|+|+| +++|++ +.++ +.+++||++||.+|++.+|+|+.+|+|+|+|+.|. |+.+|++|||+++++|+|++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~-D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQME-DGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence 89999 889986 6895 89999999999999999999999999999999998 89999999999999999999874
No 12
>PTZ00044 ubiquitin; Provisional
Probab=99.50 E-value=6.4e-14 Score=116.82 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=70.7
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
|+|+||+.+|+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|..+|++|+++++++||+.++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID--VKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999999874
No 13
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.50 E-value=5.2e-14 Score=115.90 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=67.3
Q ss_pred ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
|+||+.+|+++.++|++++||+++|++|+++.|++ +++|+|+|+|++|+|+.+|++|+++++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVP--PDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999988 99999999999999999999999999999999765
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.49 E-value=7.5e-14 Score=115.82 Aligned_cols=75 Identities=29% Similarity=0.572 Sum_probs=71.6
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+|+| +++|+++.+++.+++||++||.+|++..|+|+..|+|+|+|+.|. |+.+|++|++++|++||++++++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~-d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEcc-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence 78999 889999999999999999999999999999999999999999997 8899999999999999999998764
No 15
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.49 E-value=5.5e-14 Score=117.17 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=69.3
Q ss_pred EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+| ++.|++++++|++++||++||.+|++..|+|+++|+|+|+|+.|. |+.+|.+|||+++++++|++++.++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence 578 889999999999999999999999999999999999999999998 8899999999999999999988764
No 16
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.49 E-value=7.5e-14 Score=115.85 Aligned_cols=75 Identities=36% Similarity=0.625 Sum_probs=71.8
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+|+| +++|+++.+++++++||++||.+|++..|+|+..|+|+|+|+.|. |+.+|++|+++++++||+++++.|+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence 78999 889999999999999999999999999999999999999999998 8899999999999999999998764
No 17
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.48 E-value=1.1e-13 Score=115.39 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=68.5
Q ss_pred ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
|+|||..|++++++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|.++.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRL 71 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEc
Confidence 68999999999999999999999999999999988 999999999999999999999999999999998874
No 18
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.48 E-value=1.3e-13 Score=115.10 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=71.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+|++.+|+++.++|++++||.+||++|++..|+..|+++|+|+|+|+.|+|+.+|++|+++++++|++.++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 7899999999999999999999999999999999981129999999999999999999999999999999998865
No 19
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=6.2e-15 Score=128.57 Aligned_cols=75 Identities=36% Similarity=0.622 Sum_probs=72.3
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+|+| ++.|+|++++++|++||.+||.+|+.++|+|+++|+|+|+|++|+ |..|+++|||+..+|+|++++|.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LE-D~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccc-cCCcccccCccchhhhhhhHHHhcC
Confidence 56777 999999999999999999999999999999999999999999998 9999999999999999999999887
No 20
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.45 E-value=2.5e-13 Score=114.63 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=70.9
Q ss_pred CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.|+|+| ++.|+.++++|++++||++||.+|+++.|+++++|+|+|.|+.|. |+ +|++|||++|++|+|+..+.++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEeecccc
Confidence 489999 888999999999999999999999999999999999999999998 77 9999999999999999988765
No 21
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.44 E-value=3e-13 Score=112.21 Aligned_cols=74 Identities=26% Similarity=0.388 Sum_probs=70.7
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+|++.+|+++.++|+++.||.+||++|++..|++ +++|+|+|+|+.|+|.++|++|+++++++||++++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCC--hhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 6899999999999999999999999999999999988 9999999999999999999999999999999998743
No 22
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.44 E-value=2.2e-13 Score=113.66 Aligned_cols=71 Identities=21% Similarity=0.183 Sum_probs=67.3
Q ss_pred CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
.|.|+| ++.|+.+.++|++++||++||.+|+++.|+++++|+|+|.|+.|. |+.+|++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~-D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCC-CCCCHHHcCCCCCCEEEEEe
Confidence 388999 889999999999999999999999999999999999999999998 88999999999999999863
No 23
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.44 E-value=2.3e-13 Score=112.64 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=65.9
Q ss_pred ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
+.||+.+|+++.++|++++||+++|++|++.+|++ +++|+|+|+|+.|+|+.+|.+|+++++++||+.+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 35788999999999999999999999999999988 9999999999999999999999999999999976
No 24
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.43 E-value=2.2e-13 Score=113.74 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=67.6
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
|+|+|++..|+.+.++|++++||++||++|+++.|++ +++|+|+|+|+.|+|..+|++|+++++++|||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999987 999999999999999999999999999999985
No 25
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.43 E-value=3.7e-13 Score=111.66 Aligned_cols=74 Identities=32% Similarity=0.447 Sum_probs=70.8
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|..+|++|+++++++|+++++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 6899999999999999999999999999999999988 9999999999999999999999999999999998743
No 26
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.43 E-value=2.4e-13 Score=112.00 Aligned_cols=69 Identities=22% Similarity=0.470 Sum_probs=65.6
Q ss_pred EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
|+| ++.|++++++|++++||++||.+|+++.|+|+.+|+|+|+|++|. |+.+|++|||++++++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~-d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELR-NTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEeC
Confidence 577 789999999999999999999999999999999999999999997 899999999999999999864
No 27
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.42 E-value=4.2e-13 Score=110.17 Aligned_cols=72 Identities=28% Similarity=0.343 Sum_probs=69.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
|+|+||+.+|+++.+++++++||.+||++|++..|++ ++.|+|+|+|+.|+|+++|++|+++++++||++.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP--VEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999987 99999999999999999999999999999999764
No 28
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.41 E-value=3.6e-13 Score=111.47 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=63.8
Q ss_pred EE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 37 FL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 37 ~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
.| .++|++++++|++++||++||.+|++.+|+|+.+|+|+|+|+.|. |+.+|.+|+|+++++|||++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~-D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLT-DKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence 46 578999999999999999999999999999999999999999998 89999999999999999986
No 29
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.6e-13 Score=107.91 Aligned_cols=69 Identities=28% Similarity=0.587 Sum_probs=66.7
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv 103 (590)
|.|.| +++|+.+.++++|+|+|+.+|++|++++|||+.+|+|+|.|+++. |+.+-++|++.-|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~-DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMN-DDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccc-ccccHHHhhhccceeEeeC
Confidence 68999 999999999999999999999999999999999999999999998 8999999999999999985
No 30
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.40 E-value=7.4e-13 Score=110.60 Aligned_cols=72 Identities=19% Similarity=0.438 Sum_probs=68.5
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCC--CccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
|+|+| +.+|+++.+++++++||.+||.+|++..|+ ++++|+|+|+|+.|. |+.+|++|||++|++|+++++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCHHHcCCCCCCEEEEEEec
Confidence 79999 899999999999999999999999999999 999999999999997 8899999999999999988753
No 31
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.40 E-value=7.1e-13 Score=108.84 Aligned_cols=71 Identities=28% Similarity=0.488 Sum_probs=67.8
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
|+|+| ++.|+++++++++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++||+++|+++|++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 78999 889999999999999999999999999999999999999999997 889999999999999999764
No 32
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.39 E-value=5.7e-13 Score=112.82 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=70.7
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEE--EECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL--ICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~L--if~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+|++..|+++.++|+++.||.+||++|++..+++ +++|+| +|+|+.|+|+.+|++||++++++|+|++++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999999999987 999999 8999999999999999999999999998854
No 33
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.39 E-value=9.3e-13 Score=111.15 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=68.8
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
|+|+|++..|+.+.++|+++.||++||++|+++.+++ +++|+|+|+|+.|+|+ +|++||++++++|+|+...
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVP--KERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence 8899999999999999999999999999999999987 9999999999999999 9999999999999998764
No 34
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.9e-13 Score=127.29 Aligned_cols=76 Identities=34% Similarity=0.611 Sum_probs=73.4
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m 110 (590)
|+|+| ++.++++++++.+++||..+|.+||..+|||+++|+|+|.|++|+ |+.+|+||+|+..+++||+++++++.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe-dgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc-cCCccccccccccceEEEEEEecCCc
Confidence 78999 999999999999999999999999999999999999999999998 89999999999999999999998873
No 35
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.38 E-value=1.1e-12 Score=108.51 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=66.4
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
+.|+|++.+|+ ..++++++.||++||++|++..|++ +++|+|+|+|+.|+|+.+|++|+++++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKAN--QEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 5899999999999999999999987 99999999999999999999999999999999875
No 36
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.37 E-value=2.2e-12 Score=105.39 Aligned_cols=68 Identities=31% Similarity=0.528 Sum_probs=65.1
Q ss_pred eeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 115 kt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
||.+|+.+.++|+++.||.+||++|+...+++ +++|+|+|+|+.|+|..+|.+|+++++++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIP--PEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTST--GGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccc--cccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999988 999999999999999999999999999999998874
No 37
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.36 E-value=1.3e-12 Score=109.52 Aligned_cols=70 Identities=27% Similarity=0.476 Sum_probs=66.5
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.++|++++++|++++||++||.+|+...|+|+.+|+|+|+|+.|. |+.+|++|+|+++++||++++++++
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIK-DSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence 468999999999999999999999999999999999999999997 8899999999999999999998764
No 38
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.35 E-value=2.2e-12 Score=109.20 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=68.2
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEE--EEcCcccccCCccccccCcccccceeEEee
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKL--VFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrL--vf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
|+|+| ++.|+++.+++++++||++||.+|++..|+++++|+| +|+|+.|. |+.+|++|||++|++|+++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence 89999 8899999999999999999999999999999999999 89999998 889999999999999999987
No 39
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.34 E-value=2.2e-12 Score=106.65 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=65.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
|+|+| +..|+ ..+++++++||.+||.+|++..|+++.+|+|+|+|+.|. |+.+|++|||+++++||++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~-d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEEC
Confidence 56888 78887 489999999999999999999999999999999999998 889999999999999999874
No 40
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.33 E-value=2.9e-12 Score=106.23 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=64.1
Q ss_pred ceeeec-cceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEE
Q 007773 112 ITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLL 181 (590)
Q Consensus 112 I~Vkt~-~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~-~tL~dy~I~~gsvI~L~ 181 (590)
|+|++. +|+++.++|++++||++||++|++..|+| +++|+|+|+|+.|+|+ .+|++|+++++++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 99999999999999999999999999988 9999999999999987 68999999999999974
No 41
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.33 E-value=2.6e-12 Score=106.50 Aligned_cols=67 Identities=24% Similarity=0.420 Sum_probs=61.8
Q ss_pred EEE-Ee-CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCC-ccccccCcccccceeEE
Q 007773 36 IFL-SV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV 103 (590)
Q Consensus 36 I~V-tl-~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstL~Lv 103 (590)
|+| +. +|+++.++|++++||++||.+|++++|+|+++|+|+|+|++|. |+ .+|++|||++|++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~-D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELV-DNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEcc-CCcccHHHcCCCCCCEEEEe
Confidence 466 56 8899999999999999999999999999999999999999998 55 78999999999999874
No 42
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.8e-13 Score=119.47 Aligned_cols=72 Identities=33% Similarity=0.470 Sum_probs=69.9
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
|+|+|++++|+++.++|++++||.+||++|+.+.|++ +++|+|+|+|++|+|++|+++|+++..++||++.|
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r 72 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCC--HHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence 5789999999999999999999999999999999998 99999999999999999999999999999999987
No 43
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-12 Score=103.09 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=67.5
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
|.|.|+|++|+++.++++++++|..+|++|.++.|+| |.+|+|+|.|+++.|+.+-.+|++..|++||++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCC--chhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5689999999999999999999999999999999999 999999999999999999999999999999984
No 44
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.31 E-value=5.6e-12 Score=102.96 Aligned_cols=67 Identities=30% Similarity=0.659 Sum_probs=63.7
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
+++|++++++|.+++||.+||.+|+.+.|+|++.|+|+|+|+.|. |+.+|.+|||+++++|+|+++.
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~-d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELD-DDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEES-TTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeeccc-CcCcHHHcCCCCCCEEEEEEec
Confidence 468999999999999999999999999999999999999999996 9999999999999999998864
No 45
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.2e-12 Score=120.23 Aligned_cols=72 Identities=33% Similarity=0.475 Sum_probs=70.4
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
|.|+|++++++++.++|++++||..+|++|+.++||| +++|+|+|.|++|+|+++++||+|+..++|||+++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp--~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCC--chhhhhhhhhcccccCCccccccccccceEEEEEE
Confidence 6899999999999999999999999999999999999 99999999999999999999999999999999987
No 46
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.26 E-value=1.6e-11 Score=100.70 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=65.5
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
|+|+|+..|+++.+++++++||++||.+|++.+|+|+..|+|+|+|+.|. |+.+|++|||++|++|+++.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~-d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERD-DAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccC-ccCcHHHcCCCCCCEEEEec
Confidence 57888667999999999999999999999999999999999999999997 88999999999999998863
No 47
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.25 E-value=1.2e-11 Score=104.71 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=63.3
Q ss_pred ccceeeecccee--eEEEeecCCcHHHHHHHHHHhcC-CCCCCCcEEEEECCEEcCCCCcccccC--CCCCCEEEEEe
Q 007773 110 QAITVTTVCGKV--FEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDIC--KRNEAVIHLLV 182 (590)
Q Consensus 110 m~I~Vkt~~Gk~--~~i~Vd~s~TV~~LK~kI~~~~g-i~~~~~~Q~Lif~Gk~LeD~~tL~dy~--I~~gsvI~L~v 182 (590)
+.|+||+.+|++ |.++++++.||.+||++|++..+ .+ ++++|+|+|+|+.|+|..+|++|+ +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCC-ChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 578999999998 44555899999999999999875 33 379999999999999999999996 99999999974
No 48
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.24 E-value=3e-11 Score=104.03 Aligned_cols=79 Identities=15% Similarity=0.341 Sum_probs=74.8
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
....|+|+| +.+|+++.++|.+++|+..||.+++++.|+++++|+|+|+|+.|. ++.|+.+|+++++++|++++++.+
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~-~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR-DNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC-CCCCHHHcCCCCCCEEEEEEeccc
Confidence 467899999 889999999999999999999999999999999999999999998 899999999999999999999876
Q ss_pred c
Q 007773 109 L 109 (590)
Q Consensus 109 ~ 109 (590)
+
T Consensus 87 G 87 (87)
T cd01763 87 G 87 (87)
T ss_pred C
Confidence 4
No 49
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.23 E-value=2.7e-11 Score=101.40 Aligned_cols=69 Identities=16% Similarity=0.370 Sum_probs=65.2
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE---cCcccccCCccccccCcccccceeEE
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf---~Gk~L~~D~~tL~dygI~~gstL~Lv 103 (590)
|.|.|+..|++++++|++++||++||++|++.+|+|+++|+|+| .|+.|. |+.+|++|+|++|+.|+|+
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~-D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE-DDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC-CCcCHHHcCCCCCCEEEEE
Confidence 56888899999999999999999999999999999999999996 899997 8999999999999999886
No 50
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.22 E-value=2.5e-11 Score=99.52 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=65.8
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
++|+||+. |+.+.++|+++.||.+||++|++..|++ +++|+|+|+|+.|+|.++|++|++++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46889986 9999999999999999999999999988 9999999999999999999999999999999863
No 51
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.22 E-value=3.3e-11 Score=101.08 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=63.6
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
++|++++++|++++||.+||++|+...|++ +++|+|+|+|+.|+|+++|++|+++++++|+++++..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~ 71 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKER 71 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence 478999999999999999999999999988 9999999999999999999999999999999998853
No 52
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.19 E-value=3.4e-11 Score=101.87 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=62.4
Q ss_pred CEEEEE-EeCCeE--EEEEecCCCCHHHHHHHHHHhhC--CCccceEEEEcCcccccCCccccccC--cccccceeEEe
Q 007773 33 SILIFL-SVGGSV--IPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYG--LADGNVLHLVL 104 (590)
Q Consensus 33 sM~I~V-tl~G~t--~~l~V~~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dyg--I~~gstL~Lvl 104 (590)
.|.|+| +.++++ +.+++++++||.+||++|++..+ .++++|+|+|.|+.|. |+.+|++|+ +.++.++||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLk-D~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLP-DHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeecc-chhhHHHHhhcccCCceEEEEe
Confidence 378899 788888 55556899999999999999874 5589999999999997 899999996 99999999974
No 53
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.16 E-value=7.4e-11 Score=99.03 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=61.4
Q ss_pred EEEE--E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcc-cccceeEEe
Q 007773 35 LIFL--S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-DGNVLHLVL 104 (590)
Q Consensus 35 ~I~V--t-l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~-~gstL~Lvl 104 (590)
.++| + ..|.+++++|.+++||++||.+|+.++|+|+++|+| |+|+.|.+|+.+|++||++ +|+++||.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4555 2 457899999999999999999999999999999999 9999997677999999998 789999865
No 54
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.15 E-value=1.5e-10 Score=99.73 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=72.0
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
+..|.|+|++.+|+.+.++|.+++++..||++++++.|++ +++|+|+|+|+.|+++.|+.+|+++++++|+++++.
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC--ccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 4458899999999999999999999999999999999998 999999999999999999999999999999999874
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=9.5e-11 Score=125.86 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=71.6
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcC---CCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~g---i~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
|+|+|||.+|+++.|+|++++||.+||++|+...| ++ +++|+|+|+|+.|+|+++|.+|+|+++++|++++.++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k 78 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPK 78 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCC
Confidence 78999999999999999999999999999999988 76 99999999999999999999999999999999988654
Q ss_pred C
Q 007773 187 K 187 (590)
Q Consensus 187 k 187 (590)
.
T Consensus 79 ~ 79 (378)
T TIGR00601 79 T 79 (378)
T ss_pred C
Confidence 4
No 56
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.07 E-value=1.5e-10 Score=96.92 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=49.8
Q ss_pred ecC-CCCHHHHHHHHHHhh--CCC-ccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 49 VME-SDSIASVKLRIQSYN--GFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 49 V~~-sdTV~~LK~kIq~~~--Gip-~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
|+| ++||.+||.+|+++. |++ +++|+|+|+|++|. |+.+|++|||++|++|||+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~-D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLK-DDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCC-CCCcHHHcCCCCCCEEEEEe
Confidence 444 899999999999995 575 99999999999997 89999999999999999975
No 57
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.07 E-value=3.3e-10 Score=94.81 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=63.4
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE---CCEEcCCCCcccccCCCCCCEEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif---~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
|.|.|+ ..|+++.++|++++||++||++|++..|+| +++|+|+| +|+.|+|..+|++|++++++.|+|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 356666 578999999999999999999999999988 99999996 9999999999999999999999986
No 58
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.04 E-value=4.6e-10 Score=89.36 Aligned_cols=63 Identities=27% Similarity=0.581 Sum_probs=58.5
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCccccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gs 98 (590)
|+|+| +.+ .++.++|++++||++||.+|+...|+|+..|+|+|+|+.|. |+.+|.+|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence 68999 555 79999999999999999999999999999999999999998 88999999999874
No 59
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.03 E-value=4.7e-10 Score=89.31 Aligned_cols=64 Identities=27% Similarity=0.343 Sum_probs=60.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEA 176 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gs 176 (590)
|+|+||+.+ +.+.++|+++.||++||++|+...+++ ++.|+|+|+|+.|.|+.+|++|++++++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIP--VEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 678999988 789999999999999999999999987 8999999999999999999999998875
No 60
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=4.6e-10 Score=120.65 Aligned_cols=72 Identities=17% Similarity=0.437 Sum_probs=68.2
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC---CCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~G---ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
|+|+| ++.|+++.|+|++++||.+||.+|+...| +++.+|+|+|+|+.|. |+.+|++|+|+++++|+++++-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~-Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILS-DDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEecc
Confidence 89999 89999999999999999999999999998 9999999999999998 8899999999999999887653
No 61
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.01 E-value=4.1e-10 Score=94.27 Aligned_cols=54 Identities=28% Similarity=0.273 Sum_probs=48.8
Q ss_pred cCCcHHHHHHHHHHhc--CCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 128 RGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 128 ~s~TV~~LK~kI~~~~--gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
.++||.+||++|+++. +++ ++++|+|+|+|+.|+|+++|++|+|+++++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 3679999999999996 453 38999999999999999999999999999999974
No 62
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=98.98 E-value=2.5e-12 Score=129.01 Aligned_cols=159 Identities=27% Similarity=0.277 Sum_probs=82.1
Q ss_pred ccCCCchhhhhhhhhhccCCCCccc--ccccccCCCCCCceEEEEecccCccCCCCC------CCCCCCccceEEeeccc
Q 007773 326 TRAGEGALREVAAYILDHPRDATYS--LHDEERGFAGVPPTVMVRCLHKGFNHPNGY------KHDLENVKIGSLQMFVE 397 (590)
Q Consensus 326 ~~~g~g~~rEvAAylLD~~~~~~~~--~~~~~~gf~~VP~T~lv~~~~~~f~~~~~~------~~~~~~~k~GSlQ~fv~ 397 (590)
++.++++.+++++|.+...-+..+. .-+....+..|+.|...+..+..+++.... .......+.++.|.|+.
T Consensus 28 ~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 107 (235)
T PF00454_consen 28 ILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFLK 107 (235)
T ss_dssp HHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC------------------TTHHHHHHHH
T ss_pred HHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccccccccccccccccccccchHHHHHHh
Confidence 3456778888999999842100000 000111233333333333333333322110 11234567899999999
Q ss_pred ccCCcccCC-CCCCChhhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCC----CCCCCCcccccccCc
Q 007773 398 NVGSCEEMG-PRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP----YSFEDCTFDWLYWPQ 472 (590)
Q Consensus 398 ~~~~~~~~~-~~~f~~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp----~~~~~~~f~W~~wpq 472 (590)
...+++++. ....-..+++.++|+||+++|.|||.+|||+... +|+ +++||||+||+ ..++..+|.|--
T Consensus 108 ~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~-~g~--~~hIDfg~~f~~~~~~~~e~vPFrLT~--- 181 (235)
T PF00454_consen 108 SFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK-TGE--LIHIDFGFIFGGKHLPVPETVPFRLTR--- 181 (235)
T ss_dssp HSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET-TSE--EEE--HSSCTTHHHGSSSS--SSTTHH---
T ss_pred cCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccc-cce--eeeEEeHHhhhccccCCCCCCCeEeCH---
Confidence 988876654 3333477899999999999999999999999542 366 99999999999 557777877733
Q ss_pred CCCCCCHHHHHHHHcc----ChHHhHHHHHhc
Q 007773 473 ARQPYSPETINYINAL----DAEKDIELLKFH 500 (590)
Q Consensus 473 a~~Pfs~~~~~~i~~L----d~~~d~~~l~~~ 500 (590)
+.+..+ ++..+...++..
T Consensus 182 ----------~~~~~~~~~l~~~~~~g~f~~~ 203 (235)
T PF00454_consen 182 ----------NMVNAMGGYLGPSGVEGLFRSS 203 (235)
T ss_dssp ----------HHHHHTTTSSSTSHHHHHHHHH
T ss_pred ----------HHHHHHhccCCCchhHhHHHHH
Confidence 344444 777777777753
No 63
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.93 E-value=2.1e-09 Score=90.28 Aligned_cols=64 Identities=17% Similarity=0.064 Sum_probs=58.4
Q ss_pred eccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC-CCCcccccCCC-CCCEEEEEe
Q 007773 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKR-NEAVIHLLV 182 (590)
Q Consensus 116 t~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~Le-D~~tL~dy~I~-~gsvI~L~v 182 (590)
...|.++.++|++++||++||++|+++.|++ +++|+| |+|+.|. |.++|++|+++ +|++++|.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3568899999999999999999999999998 999999 9999985 77999999998 889999864
No 64
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.91 E-value=2e-09 Score=93.70 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=59.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
..++.|++++||.+||.+|++++++++.+|+|.|+|+.|.+|.+||++|||..+++|+|.+..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 467789999999999999999999999999999999999988999999999999999998754
No 65
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.89 E-value=1.7e-09 Score=96.60 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=60.8
Q ss_pred ccceeeeccceee-EEEeecCCcHHHHHHHHHHhc-----CCCCCCCcEEEEECCEEcCCCCcccccC------CCCCCE
Q 007773 110 QAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKG-----REFVDLKNQELICDGEELEDQRLITDIC------KRNEAV 177 (590)
Q Consensus 110 m~I~Vkt~~Gk~~-~i~Vd~s~TV~~LK~kI~~~~-----gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~------I~~gsv 177 (590)
+.|.+|..+|..+ ++.+++++||.+||++|++.. ++|.++++|+|+|.|+.|+|++||++|+ +....|
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 3444555555333 367789999999999999555 4444589999999999999999999999 777899
Q ss_pred EEEEeecC
Q 007773 178 IHLLVRKS 185 (590)
Q Consensus 178 I~L~vrks 185 (590)
+|+++|.+
T Consensus 85 mHvvlr~~ 92 (113)
T cd01814 85 MHVVVQPP 92 (113)
T ss_pred EEEEecCC
Confidence 99999965
No 66
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.80 E-value=1.5e-08 Score=81.64 Aligned_cols=67 Identities=31% Similarity=0.469 Sum_probs=62.8
Q ss_pred eeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 114 Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
|+..+|+.+.+.+.++.||++||++|+...+++ ++.|+|+|+|+.|+|..+|.+|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVP--PEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 667789999999999999999999999999987 9999999999999999999999999999999864
No 67
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.79 E-value=5.3e-09 Score=93.46 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=63.3
Q ss_pred CCEEEEE-EeCC-eEEEEEecCCCCHHHHHHHHH-----HhhCCC--ccceEEEEcCcccccCCccccccC------ccc
Q 007773 32 DSILIFL-SVGG-SVIPMRVMESDSIASVKLRIQ-----SYNGFF--VKKQKLVFEGRELARSNSRVRDYG------LAD 96 (590)
Q Consensus 32 ~sM~I~V-tl~G-~t~~l~V~~sdTV~~LK~kIq-----~~~Gip--~~~QrLvf~Gk~L~~D~~tL~dyg------I~~ 96 (590)
+.+.|.+ ..+| ..=+..+.+++||++||++|+ .++|+| +++|+|+|+|+.|. |+.||++|+ +..
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe-D~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE-NSKTVGECRSPVGDIAGG 81 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC-CCCcHHHhCCcccccCCC
Confidence 5567777 4456 466778899999999999999 445566 99999999999998 999999999 777
Q ss_pred ccceeEEeeec
Q 007773 97 GNVLHLVLRLS 107 (590)
Q Consensus 97 gstL~LvlrLs 107 (590)
..|+|++++.+
T Consensus 82 ~~TmHvvlr~~ 92 (113)
T cd01814 82 VITMHVVVQPP 92 (113)
T ss_pred ceEEEEEecCC
Confidence 89999999875
No 68
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.79 E-value=6.6e-09 Score=112.60 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=69.6
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
.++|+|||.++ ++.+.|..+.||.++|+.|++.++++ +++++|+|.||+|+|+.+|..|+|++|.|||||++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAP--PDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCC--hhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 47899999888 89999999999999999999999988 9999999999999999999999999999999987744
No 69
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.75 E-value=2.8e-08 Score=81.95 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=65.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCC-CcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL-KNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~-~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
|+|+|++.+|+.+.+.|.++.++..|+++.+++.+++ . ++.+|+|+|+.|.++.|+.+|+++++++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIP--PEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTT--T-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCC--ccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 5789999999999999999999999999999999988 7 999999999999999999999999999999863
No 70
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.73 E-value=1.3e-08 Score=110.33 Aligned_cols=75 Identities=23% Similarity=0.382 Sum_probs=69.0
Q ss_pred CCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 32 ~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
..++|+|+..+..+.+.|..+.||.+||++|...+++++++|+|+|.||+|+ |+.+|..|||++|.|||||++..
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence 5689999444449999999999999999999999999999999999999998 99999999999999999998864
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.73 E-value=2.2e-08 Score=103.76 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=71.5
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
|.|+|||+.|.+|+++|.+++||..+|++|+...|-.-|...|+|+|+|+.|.|..++..|++.++..|.+++.|+.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 68999999999999999999999999999999999333499999999999999999999999999999999988775
No 72
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.71 E-value=3.4e-08 Score=79.61 Aligned_cols=65 Identities=32% Similarity=0.656 Sum_probs=60.3
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
..+|+.+.+++.++.||.+||.+|+...|+|+..|+|+|+|+.|. |+.+|.+|++.++++|++..
T Consensus 4 ~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~-d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 4 TLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILK-DDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred ccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCC-CcCCHHHCCCCCCCEEEEEE
Confidence 346889999999999999999999999999999999999999997 89999999999999998764
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.71 E-value=1.8e-08 Score=104.51 Aligned_cols=73 Identities=19% Similarity=0.439 Sum_probs=68.6
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC--CCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
|+|+| ++.++++++++.|++||.++|.+|+...| +|+.+|+|+|+|+.|. |+.++.+|+|.+++.|.+++.-+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~-D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILK-DETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceecc-CCcchhhhccccCceEEEEEecC
Confidence 78999 99999999999999999999999999999 9999999999999998 99999999999999888776543
No 74
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.71 E-value=6.8e-08 Score=82.79 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=60.0
Q ss_pred EEEEEEeC--CeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE-EcCc-----ccccCCccccccCcccccceeEE
Q 007773 34 ILIFLSVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEGR-----ELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 34 M~I~Vtl~--G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv-f~Gk-----~L~~D~~tL~dygI~~gstL~Lv 103 (590)
+.|+|+.+ ......++.++.||.+||.+++..+|+++..|+|. |.|+ .|.+|+.+|.+||+++|.+||++
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45666443 55667779999999999999999999999999995 7888 57668899999999999999986
No 75
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.69 E-value=3.5e-08 Score=86.10 Aligned_cols=62 Identities=23% Similarity=0.120 Sum_probs=57.3
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC-CCCcccccCCCCCCEEEEEee
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~Le-D~~tL~dy~I~~gsvI~L~vr 183 (590)
+...++|++++||++||.+|+++++++ |++|+|.|+|+.|. |.+||++|++..+++|.|.+.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVA--PFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCC--cccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 356788999999999999999999988 99999999999995 589999999999999999875
No 76
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.67 E-value=7e-08 Score=79.53 Aligned_cols=70 Identities=23% Similarity=0.470 Sum_probs=64.0
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCc-cceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~-~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
|+|+| ..+|+.+.+.|.+++++..|+.+..++.|++. +..+|+|.|+.|. ++.|+++||+++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~-~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLD-PNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcC-CCCCHHHCCCCCCCEEEEEC
Confidence 78899 78899999999999999999999999999999 9999999999997 88999999999999999864
No 77
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.59 E-value=1.8e-07 Score=74.89 Aligned_cols=71 Identities=38% Similarity=0.700 Sum_probs=66.7
Q ss_pred EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
+++ ++.|+++.+++.++++|..+|.+|+...|++.++|++.+.|+.|+ |+.++.+|+|..+++++++.++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEecC
Confidence 456 789999999999999999999999999999999999999999998 88999999999999999988765
No 78
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.56 E-value=3.8e-07 Score=73.04 Aligned_cols=72 Identities=29% Similarity=0.400 Sum_probs=67.3
Q ss_pred ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
+++++..|+.+.+.+.++++|..+|.+|+...+++ .++|++.+.|+.|+|..++.+|+|..++++++..+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCC--CeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 56788899999999999999999999999999988 8999999999999999999999999999999987643
No 79
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.37 E-value=1.5e-06 Score=74.73 Aligned_cols=70 Identities=20% Similarity=0.451 Sum_probs=57.3
Q ss_pred EEEEEEeCC---eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC-------cccccCCccccccCcccccceeEE
Q 007773 34 ILIFLSVGG---SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-------RELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 34 M~I~Vtl~G---~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G-------k~L~~D~~tL~dygI~~gstL~Lv 103 (590)
+.|+|+.+. .....++.++.||++||.+|+..+|+|+..|+|.+.. ..+.+|..+|.+||+++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 567775443 4899999999999999999999999999999999861 125668899999999999999874
No 80
>KOG3829 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2e-06 Score=91.40 Aligned_cols=169 Identities=23% Similarity=0.285 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHcCCCCc-ccCCCCCcE---EEEEeCCCCeEEEEEecCC----CCCCCCCCCCCCCCCCCCCCcCCCccC
Q 007773 257 RLISSTVDGLERGNEPI-PSSEGSGGA---YFMQDSSGQKYISVFKPMD----EEPMSVNNPRGLPISVDGEGLKKGTRA 328 (590)
Q Consensus 257 ~~~~~~~~~~~~g~~p~-~~~~Gs~Gs---yf~~~~~g~~~~aVFKP~d----eEp~~~~nP~~~~~~~~~~g~~~g~~~ 328 (590)
.++..+..++.. .|+ .+..+-+|| ..++=++++ -|||||.. ||-... + | .||-|
T Consensus 151 ~~~~alL~~l~~--~pI~~v~v~~~GtqLKlll~~~~~~--KavfKPmR~~Rd~~~~~~--y--f------s~~dR---- 212 (486)
T KOG3829|consen 151 QSMGALLHALRT--EPITRVSVLGRGTQLKLLLRLSHQQ--KVVFKPMRYPRDEVIDGM--Y--Y------SGFDR---- 212 (486)
T ss_pred hhHHHHHHHhhc--CcceEEeecCCceEEEEEEEecCCc--eeeeccccCCccccCCCc--c--c------ccccc----
Confidence 556666666654 344 234444454 445555554 59999953 332211 1 1 12322
Q ss_pred CCchhhhhhhhhhccCCCCcccccccccCCCCCCceEEEEe--cc-----------cCccCCCCC---------------
Q 007773 329 GEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRC--LH-----------KGFNHPNGY--------------- 380 (590)
Q Consensus 329 g~g~~rEvAAylLD~~~~~~~~~~~~~~gf~~VP~T~lv~~--~~-----------~~f~~~~~~--------------- 380 (590)
---||||+=||+ .|||..+|||+=+-+ .- .+|+.+.+.
T Consensus 213 ---HnAEiAAFHLDR-----------iL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~ 278 (486)
T KOG3829|consen 213 ---HNAEVAAFHLDR-----------VLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTE 278 (486)
T ss_pred ---cchhhhhhhhhh-----------hhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCc
Confidence 356999999996 799999999964322 11 234443221
Q ss_pred --CCCCCCccceEEeecccccCCccc-CCCC------------CCC--------------------hhhhhheeeeeeee
Q 007773 381 --KHDLENVKIGSLQMFVENVGSCEE-MGPR------------AFP--------------------VDEVHKISVLDIRL 425 (590)
Q Consensus 381 --~~~~~~~k~GSlQ~fv~~~~~~~~-~~~~------------~f~--------------------~~ev~ki~ilD~~i 425 (590)
.+..+..+.||+|.|+++....-. ..++ .|. .-++=.|+||||+|
T Consensus 279 ~avCg~pdmlEGS~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLi 358 (486)
T KOG3829|consen 279 EAVCGDPDMLEGSLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLI 358 (486)
T ss_pred ccccCCcccccceEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHh
Confidence 122558899999999998432211 0111 011 12467899999999
Q ss_pred ecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773 426 ANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 426 ~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
.|.|||.=--.-.. ++.--++-+|||-+|-..
T Consensus 359 GN~DRHHYEtF~~f--~d~s~~ihLDngr~FGrp 390 (486)
T KOG3829|consen 359 GNMDRHHYETFEVF--GDLSFLIHLDNGRAFGRP 390 (486)
T ss_pred cccchhhhhhhhcc--CCcceEEEeccccccCCC
Confidence 99999964322111 233569999999999743
No 81
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.20 E-value=5.9e-06 Score=70.82 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=55.1
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE-ECCE-----Ec-CCCCcccccCCCCCCEEEEEeec
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDGE-----EL-EDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li-f~Gk-----~L-eD~~tL~dy~I~~gsvI~L~vrk 184 (590)
.......+.++.||.+||+++...+|++ +..|+|. |.|+ .| +|.++|+.|++++|..||++-..
T Consensus 12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~ 82 (84)
T cd01789 12 SFSFEKKYSRGLTIAELKKKLELVVGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVS 82 (84)
T ss_pred ceeeeEecCCCCcHHHHHHHHHHHHCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCC
Confidence 4455566999999999999999999998 9999995 8888 45 78899999999999999997543
No 82
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.13 E-value=6e-06 Score=73.96 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=62.7
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCc-------ccccceeEEeee
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-------ADGNVLHLVLRL 106 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-------~~gstL~LvlrL 106 (590)
|-|.|.....++.+++.++.||.+||++|+.....|+..|+|+-.+..|+ |+.||+|||+ +...+|-|.+|-
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLe-D~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLD-DGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeec-ccccHHHcCccccccccCCCCeEEEEEec
Confidence 34445667789999999999999999999999999999999996666776 9999999999 667788887775
Q ss_pred cc
Q 007773 107 SD 108 (590)
Q Consensus 107 sd 108 (590)
.+
T Consensus 82 ~d 83 (119)
T cd01788 82 SD 83 (119)
T ss_pred CC
Confidence 43
No 83
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.12 E-value=1.9e-05 Score=71.32 Aligned_cols=78 Identities=24% Similarity=0.302 Sum_probs=57.0
Q ss_pred ccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcC-----CCCCCCcEEEEECCEEcCCCCcccccCCCCCC------E
Q 007773 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGR-----EFVDLKNQELICDGEELEDQRLITDICKRNEA------V 177 (590)
Q Consensus 110 m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~g-----i~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gs------v 177 (590)
+.|.++-.+|. ...+..+++.||++||++|....- .+..+.+.+|+|.|+.|+|..+|+++.+..+. +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 34445556788 778899999999999999998752 23346799999999999999999999876554 7
Q ss_pred EEEEeecCCC
Q 007773 178 IHLLVRKSAK 187 (590)
Q Consensus 178 I~L~vrks~k 187 (590)
+||+++...-
T Consensus 83 mHlvvrp~~~ 92 (111)
T PF13881_consen 83 MHLVVRPNAP 92 (111)
T ss_dssp EEEEE-SSSS
T ss_pred EEEEecCCCC
Confidence 9999986643
No 84
>PLN02560 enoyl-CoA reductase
Probab=98.03 E-value=9.1e-06 Score=85.66 Aligned_cols=68 Identities=26% Similarity=0.492 Sum_probs=58.7
Q ss_pred EEEEE-EeCCeEE---EEEecCCCCHHHHHHHHHHhhCC-CccceEEEEc---Cc----ccccCCccccccCccccccee
Q 007773 34 ILIFL-SVGGSVI---PMRVMESDSIASVKLRIQSYNGF-FVKKQKLVFE---GR----ELARSNSRVRDYGLADGNVLH 101 (590)
Q Consensus 34 M~I~V-tl~G~t~---~l~V~~sdTV~~LK~kIq~~~Gi-p~~~QrLvf~---Gk----~L~~D~~tL~dygI~~gstL~ 101 (590)
|+|.| ..+|+.+ +++++++.||++||.+|+++.++ ++++|+|.+. |+ .|. |+.+|++||++++++|+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEE
Confidence 67888 6678876 89999999999999999999986 8999999983 43 676 88899999999999865
Q ss_pred E
Q 007773 102 L 102 (590)
Q Consensus 102 L 102 (590)
+
T Consensus 80 ~ 80 (308)
T PLN02560 80 F 80 (308)
T ss_pred E
Confidence 4
No 85
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=5e-06 Score=96.73 Aligned_cols=70 Identities=26% Similarity=0.478 Sum_probs=67.0
Q ss_pred EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
+.| |++.++.++.|...+||.++|..|.++.+|+..+|||+|+|+.|. |++++++|+| +|.+|||+-|.+
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~-~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQ-DDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeec-cchhhhhccC-CCeEEEeeccCC
Confidence 778 899999999999999999999999999999999999999999998 9999999999 999999998853
No 86
>PLN02560 enoyl-CoA reductase
Probab=98.02 E-value=9.5e-06 Score=85.53 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=61.1
Q ss_pred ccceeeeccceee---EEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC-------CEEcCCCCcccccCCCCCCEEE
Q 007773 110 QAITVTTVCGKVF---EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD-------GEELEDQRLITDICKRNEAVIH 179 (590)
Q Consensus 110 m~I~Vkt~~Gk~~---~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~-------Gk~LeD~~tL~dy~I~~gsvI~ 179 (590)
|.|+|++.+|+.+ +++++++.||++||++|+++.+.. ++++|+|.+. |+.|+|+.+|.|++++++++|+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~-~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKY-YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCC-ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence 6788888888887 799999999999999999998862 2899999983 3488999999999999999988
Q ss_pred E
Q 007773 180 L 180 (590)
Q Consensus 180 L 180 (590)
+
T Consensus 80 ~ 80 (308)
T PLN02560 80 F 80 (308)
T ss_pred E
Confidence 6
No 87
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.00 E-value=1.6e-05 Score=71.23 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=57.2
Q ss_pred eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-------CCCCEEEEEeecC
Q 007773 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-------RNEAVIHLLVRKS 185 (590)
Q Consensus 121 ~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I-------~~gsvI~L~vrks 185 (590)
++-++++.+.||.+||++|+.....+ +++|+|+-.+..|+|.+||+|||+ ++.+++-|.+|+.
T Consensus 13 TiF~dakes~tVlelK~~iegI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~ 82 (119)
T cd01788 13 TIFTDAKESTTVYELKRIVEGILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSS 82 (119)
T ss_pred EEEeecCCcccHHHHHHHHHHHhcCC--hhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecC
Confidence 45578999999999999999999987 999999988889999999999999 7799999998864
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=7.7e-06 Score=95.19 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=68.4
Q ss_pred cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
.|.|||++.++.+|.|...+||.++|..|+.+.+|+ .+.|+|+|.|++|.|++++..|+| +|-||||+-|.+
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccc--cccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 488999999999999999999999999999999998 999999999999999999999999 999999997743
No 89
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.88 E-value=3.9e-05 Score=65.88 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=55.3
Q ss_pred ceeeeccc--eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC----C---EEc-CCCCcccccCCCCCCEEEEE
Q 007773 112 ITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD----G---EEL-EDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 112 I~Vkt~~G--k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~----G---k~L-eD~~tL~dy~I~~gsvI~L~ 181 (590)
|+|..... +.....++.+.||.+||++|...+|++ ++.|+|.+. + ..+ +|.++|..|++++|.+||+.
T Consensus 4 l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 4 LFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC--cccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 44444333 478889999999999999999999998 999999986 1 223 67999999999999999986
Q ss_pred eec
Q 007773 182 VRK 184 (590)
Q Consensus 182 vrk 184 (590)
-..
T Consensus 82 D~~ 84 (87)
T PF14560_consen 82 DTN 84 (87)
T ss_dssp E-T
T ss_pred eCC
Confidence 543
No 90
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.85 E-value=6.6e-05 Score=67.86 Aligned_cols=74 Identities=30% Similarity=0.417 Sum_probs=55.3
Q ss_pred CEEEEE-EeCCe-EEEEEecCCCCHHHHHHHHHHhh-------CCCccceEEEEcCcccccCCccccccCccccc-----
Q 007773 33 SILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYN-------GFFVKKQKLVFEGRELARSNSRVRDYGLADGN----- 98 (590)
Q Consensus 33 sM~I~V-tl~G~-t~~l~V~~sdTV~~LK~kIq~~~-------Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gs----- 98 (590)
.+.|.+ ..+|. +.++.+++++||++||++|...- -..+...||+|.|+.|+ |+.+|+++.+..+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~-d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILE-DNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecC-CcCcHHHhCCCCCCCCCCC
Confidence 466777 56888 99999999999999999998751 12456789999999998 99999999887654
Q ss_pred -ceeEEeeec
Q 007773 99 -VLHLVLRLS 107 (590)
Q Consensus 99 -tL~LvlrLs 107 (590)
++||+++..
T Consensus 81 ~vmHlvvrp~ 90 (111)
T PF13881_consen 81 TVMHLVVRPN 90 (111)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEecCC
Confidence 688888754
No 91
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.72 E-value=0.00015 Score=54.68 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=58.1
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
.+|....+.+.+..|++++|++|+.+.+.+ ++.+.|+++|..+++...+.++++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLP--PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcC--hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 367888899999999999999999999966 9999999999999999988899999999999853
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.63 E-value=8.9e-05 Score=63.18 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=44.8
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEc---Cccc-ccCCccccccCcccccceeEE
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---GREL-ARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~---Gk~L-~~D~~tL~dygI~~gstL~Lv 103 (590)
.++|.|.|.....+..+++++++|+.+||++|++..+++...|.|+.+ ...| ..++.+|+++||+.|+.|.|.
T Consensus 2 ~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 2 ASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 367999996566788899999999999999999999999999988643 2234 347899999999999998764
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.60 E-value=0.00021 Score=53.77 Aligned_cols=63 Identities=29% Similarity=0.494 Sum_probs=57.3
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 41 ~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
++....+.+.++.|+.+||.+|..+.|+++..|.|+++|..+. +...+.+|++.+++++++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence 5788889999999999999999999999999999999999997 67777899999999998764
No 94
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.54 E-value=0.0002 Score=60.15 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=46.4
Q ss_pred ecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCCCCcccccCCCCCCEEEE
Q 007773 127 ERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 127 d~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~LeD~~tL~dy~I~~gsvI~L 180 (590)
.++.||.+||+.|++..+.. +++.|+|. +.|+.|.|..+|.+|++.++++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~-~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQL-TVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCC-CcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 47789999999999987642 38999986 8999999999999999999999886
No 95
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.50 E-value=0.00013 Score=62.25 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=43.3
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC---CEEc--CCCCcccccCCCCCCEEEEE
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---GEEL--EDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~---Gk~L--eD~~tL~dy~I~~gsvI~L~ 181 (590)
+.|-|-||+.+| .+.+++++++|+.+||++|++..+++ .+.|.|+.+ ..+| .+.++|++++++.|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS-----TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCC--CcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 456677887776 57889999999999999999999987 778888642 2345 57899999999999999873
No 96
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.46 E-value=0.00025 Score=59.57 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=45.6
Q ss_pred cCCCCHHHHHHHHHHhhC-CCccceEEE--EcCcccccCCccccccCcccccceeE
Q 007773 50 MESDSIASVKLRIQSYNG-FFVKKQKLV--FEGRELARSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 50 ~~sdTV~~LK~kIq~~~G-ip~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstL~L 102 (590)
.++.||.+||..|+...+ +++++|+|. +.|+.|. |+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEE
Confidence 478999999999998875 579999986 7899997 888999999999998764
No 97
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.45 E-value=0.00043 Score=57.68 Aligned_cols=70 Identities=27% Similarity=0.348 Sum_probs=57.3
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEc---C-cccccCCccccccCcccccceeEEe
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---G-RELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~---G-k~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
++++| .......++.|+|..+|..+|.+|....|++- .|+|.|. | ++|.++..+|++|||-.+..|-|.-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 47888 55667899999999999999999999999985 9999996 2 3344489999999998776665543
No 98
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.001 Score=69.02 Aligned_cols=69 Identities=20% Similarity=0.474 Sum_probs=59.9
Q ss_pred EEEEEEeC--C--eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773 34 ILIFLSVG--G--SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 34 M~I~Vtl~--G--~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv 103 (590)
|.++|.++ | ..++++|+.+.+|.+||+-++.+.|+|+++.+++|.|++|+ |+.+++.+.+..-+.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhh
Confidence 45566333 2 46888999999999999999999999999999999999998 8999999998888888876
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.001 Score=69.08 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=58.8
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
...++++|+.+.+|.+||+.+++..|++ +++.+++|.|++|.|..++..+.+...+++|+++-+++
T Consensus 13 ~h~l~v~v~~~t~I~~lke~Vak~~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP~ 78 (446)
T KOG0006|consen 13 SHGLPVEVDSDTSIFQLKEVVAKRQGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPW 78 (446)
T ss_pred cCceeEEEecCCCHHHHHHHHHHhhCCC--hhheEEEEeccccccCceeecccccccchhhhhccCcc
Confidence 3568899999999999999999999998 99999999999999999999888888899998854443
No 100
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.95 E-value=0.0027 Score=53.05 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=59.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE---CC--EEcCCCCcccccCCCCCCEEEEEe
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DG--EELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif---~G--k~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
++|+|+...+..+.+.|++..+|..+|++|....++. ..|+|.| +| ..|.++.+|++|||=.+..|.|+-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~---g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS---GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc---cceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 3678888888889999999999999999999999975 6999999 23 347899999999987777776653
No 101
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00084 Score=54.40 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=58.3
Q ss_pred EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 35 ~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv 103 (590)
++.+ ..=|+...+.+.++|||+++|..|+++.|..+++..|--.+..+. |.-+|++|.|++|..+.|.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~k-d~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhh-cccceeeEEeccCccEEEe
Confidence 3444 455789999999999999999999999999999888876677786 8999999999999887764
No 102
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=96.26 E-value=0.024 Score=60.11 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=78.8
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChHHhH
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDI 494 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~ 494 (590)
+---+|.=|++.=.|||.||||+..+ |+ ++-||=|++|-.... .++.+..+-.-++++.++.+-....+...
T Consensus 152 ~Agysv~tYiLgigDRHn~NILid~~--G~--l~HIDFG~il~~~p~----~~~~~E~~PFkLT~emv~~mGg~~~s~~f 223 (311)
T cd05167 152 MAAYSLISYLLQIKDRHNGNIMIDDD--GH--IIHIDFGFIFEISPG----GNLKFESAPFKLTKEMVQIMGGSMEATPF 223 (311)
T ss_pred HHHHHHHHHHhhccccCccceEEcCC--CC--EEEEeeHHhhccCCC----CCCCcCCCCEeecHHHHHHhCCCCcchhH
Confidence 44566778888899999999999975 87 999999999965321 11111222223566666655444333333
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 007773 495 ELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASI 574 (590)
Q Consensus 495 ~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~~~ 574 (590)
+.+++. ..++..+||--.-++ --+-++|--..+..-+ +..+..-++.+.++.+|..-.+.+.++
T Consensus 224 ~~F~~~----~~~~~~~lR~~~~~i----------l~l~~lm~~s~lp~~~--~~~i~~l~~rf~l~~se~~a~~~~~~l 287 (311)
T cd05167 224 KWFVEL----CVRAFLAVRPYMDEI----------VSLVELMLDSGLPCFR--GDTIKNLRQRFAPEKSEREAAEFMLSL 287 (311)
T ss_pred HHHHHH----HHHHHHHHHcCHHHH----------HHHHHHHHcCCchhhh--HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 333321 112222233221111 1122233221111111 333444555677888888888888888
Q ss_pred HHHHhhhc
Q 007773 575 MDRHLDDL 582 (590)
Q Consensus 575 ~~~~~~~~ 582 (590)
++.-++..
T Consensus 288 I~~s~~~~ 295 (311)
T cd05167 288 IAESYEKF 295 (311)
T ss_pred HHHHHhch
Confidence 77776653
No 103
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.15 E-value=0.012 Score=51.52 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=52.1
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE-cCcccccCCccccccCcc
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-EGRELARSNSRVRDYGLA 95 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf-~Gk~L~~D~~tL~dygI~ 95 (590)
|-|.|.....++.++..++.||-+||.+++....-|++.|+|+. ...+|.+|..+|.|+|..
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 44555677789999999999999999999999999999999997 443444599999999753
No 104
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=96.03 E-value=0.0018 Score=54.62 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=28.5
Q ss_pred hhhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEee
Q 007773 412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI 450 (590)
Q Consensus 412 ~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pI 450 (590)
+.++-++.+|+++|.|+|||.+||=+-.+ ++.++|.|+
T Consensus 40 ~~~l~~~~~fn~ligN~D~H~kN~s~l~~-~~~~~LaP~ 77 (79)
T PF07804_consen 40 VRELFRRLVFNYLIGNTDRHLKNFSFLYD-GGGWRLAPA 77 (79)
T ss_dssp HHHHHHHHHHHHHCTBS---CCCSEEEEE-CCEEEE--B
T ss_pred HHHHHHHHHHHHHHcCCcCCcCCEEEEEc-CCeEEecCC
Confidence 56888999999999999999999877665 577899987
No 105
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0028 Score=51.44 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=58.6
Q ss_pred cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L 180 (590)
.+.++..-|++..+.+.+++||+++|..|+...|-. ++...|---+..++|+-+|+||.+++|-.+.|
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~--~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCC--hhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 455666679999999999999999999999999976 77777776677889999999999999887765
No 106
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=95.76 E-value=0.087 Score=55.39 Aligned_cols=142 Identities=20% Similarity=0.309 Sum_probs=77.6
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCC-CcccccccCcCCCCCCHHHHHHHHccChHHh
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFED-CTFDWLYWPQARQPYSPETINYINALDAEKD 493 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~-~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d 493 (590)
+.-.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|-..... ..| ..+---++++.++.+-....+ .
T Consensus 131 lA~ySvv~YiLgigDRH~~NILid~~--G~--liHIDFG~ilg~~p~~~~~~-----E~~PFrLT~emv~~mGg~~s~-~ 200 (289)
T cd00893 131 MAGYSLLCYLLQIKDRHNGNILLDSD--GH--IIHIDFGFILDSSPGNNLGF-----EPAAFKFTKEMVDFMGGKKSD-D 200 (289)
T ss_pred HHHHHHHHHHhhccccCCCceEECCC--CC--EEEEehHHhhCcCCcCCCCC-----CCCCeeecHHHHHHhCCCCCh-h
Confidence 45567788899999999999999864 77 9999999999864322 111 112223366666555443322 1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 007773 494 IELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVAS 573 (590)
Q Consensus 494 ~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~~ 573 (590)
...+++. -.+.+.+||-..-. .-.+-++|.-..+..-+ +..+..-++.+.++.+|+...+.+.+
T Consensus 201 f~~F~~~----c~~~~~~lR~~~~~----------il~ll~~m~~~~lp~~~--~~~i~~l~~r~~l~~s~~~a~~~~~~ 264 (289)
T cd00893 201 FKKFRYL----CLRGFIAVRKHMDL----------VISLVYLLIFSGLPCFR--GSTIKKLKERLCLNMSEKEAINTVMK 264 (289)
T ss_pred HHHHHHH----HHHHHHHHhhCHHH----------HHHHHHHHccCCCcccC--HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2223221 12222222221111 11112222222211111 23445556667778888888888877
Q ss_pred HHHHHhhhc
Q 007773 574 IMDRHLDDL 582 (590)
Q Consensus 574 ~~~~~~~~~ 582 (590)
+++.-++..
T Consensus 265 lI~~s~~~~ 273 (289)
T cd00893 265 KIDSSYNSI 273 (289)
T ss_pred HHHHHHhhh
Confidence 777766643
No 107
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.085 Score=59.98 Aligned_cols=143 Identities=21% Similarity=0.294 Sum_probs=98.0
Q ss_pred hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChHH
Q 007773 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEK 492 (590)
Q Consensus 413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~~ 492 (590)
....--+|.=|+|+=.|||.||+|++++ |+ +..||-||.|--..+..+ ...-++.+.++++-.-....
T Consensus 684 kScaGYsVitYILGvGDRhldNLllT~d--Gk--~FHiDFgyIlGRDPKP~p--------p~MkL~kemve~mgg~es~~ 751 (843)
T KOG0906|consen 684 KSCAGYSVITYILGVGDRHLDNLLLTKD--GK--LFHIDFGYILGRDPKPFP--------PPMKLAKEMVEGMGGAESKQ 751 (843)
T ss_pred HhhccceeeeeeecccCCCcCceEEccC--Cc--EEEEeeeeeccCCCCCCC--------CccccCHHHHHHhcccchHH
Confidence 3455678999999999999999999998 87 999999999986655433 23445677777776554444
Q ss_pred hHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCC-CCCCchHHHHHHHHHHhcCCCCChhhHHHHH
Q 007773 493 DIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKT-LKDESVIEQIVREAQDAVLPGTSEDGFLESV 571 (590)
Q Consensus 493 d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~-~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~ 571 (590)
-.+....+ -+....||.+..++ |+++. +|.-.+ .+...+.+++|-++++-.--.+||++=...+
T Consensus 752 Yq~F~s~c-----~~Af~~LRRssnlI-------lnLf~---LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~f 816 (843)
T KOG0906|consen 752 YQEFRSYC-----YEAFLILRRSSNLI-------LNLFS---LMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHF 816 (843)
T ss_pred HHHHHHHH-----HHHHHHHHHhccHH-------HHHHH---HHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHH
Confidence 44444332 23333444443332 23433 444443 3567888999999999888889999888777
Q ss_pred HHHHHHHhhhc
Q 007773 572 ASIMDRHLDDL 582 (590)
Q Consensus 572 ~~~~~~~~~~~ 582 (590)
...++.-+..+
T Consensus 817 q~lI~~SV~AL 827 (843)
T KOG0906|consen 817 QKLINESVNAL 827 (843)
T ss_pred HHHHHHHHHHH
Confidence 77777666544
No 108
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.024 Score=62.23 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=63.8
Q ss_pred EEEEEeCCeEEEEE-ecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773 35 LIFLSVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 35 ~I~Vtl~G~t~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
.|.|.-.|+.+.++ ++.++|+..+|.++...+|++|+.|++...|..+. |+..+...+|++|.+++++-..
T Consensus 5 ~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeeccc
Confidence 45567788999998 99999999999999999999999999999999998 7778888999999999987643
No 109
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=95.51 E-value=0.031 Score=56.20 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=45.0
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCC-CCcccccccCcCCCCCCHHHHHHHHccC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFE-DCTFDWLYWPQARQPYSPETINYINALD 489 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~-~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld 489 (590)
++-.++|||++|+|+|||.-|..=+. .+ ..-++-+|||-.|-.... .... -+..-|+ --|...|.+.++.|.
T Consensus 91 dliDm~IFDFLigN~DRhhye~f~~f-gn-~~~l~~LDNgrgFG~~~~de~sI-laPL~Qc-C~iRrST~~rL~~l~ 163 (221)
T PF06702_consen 91 DLIDMAIFDFLIGNMDRHHYETFNKF-GN-EGFLLHLDNGRGFGRPSHDELSI-LAPLYQC-CRIRRSTWERLQLLS 163 (221)
T ss_pred HHHHHHHHHHHhcCCcchhhhhhhcc-CC-CceEEEEeCCcccCCCCCCccch-hccHHHh-hhccccHHHHHHHhc
Confidence 56789999999999999999966332 22 234899999999953222 1220 0122222 335556666666555
No 110
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.12 Score=45.61 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=66.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
+++.|+-.++.+..+.|.++.+...|+..-++..|+. .+..+..|+|+.+...+|-.++..+++++|.++.....
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~g 95 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLS--MNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTG 95 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCc--cceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeeccc
Confidence 4555565677888999999999999999999999988 89999999999999999999999999999998765443
No 111
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=95.02 E-value=0.18 Score=53.10 Aligned_cols=141 Identities=23% Similarity=0.326 Sum_probs=76.2
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChHH
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAEK 492 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~~ 492 (590)
+--.+|.=|++.=.|||.+|||+..+ |+ ++.||=|++|-.......| -..|| +++.++.+-....+
T Consensus 133 ~A~ySvv~YvLGigDRH~~NILi~~~--G~--liHIDFG~~fg~~~~~~~~-------E~vPFrLT~~mv~~mGg~~s~- 200 (293)
T cd05168 133 LAGYSLICYLLQIKDRHNGNILIDND--GH--IIHIDFGFMLSNSPGNVGF-------ETAPFKLTQEYIEVMGGVNSD- 200 (293)
T ss_pred HHHHHHHHHHhhccccCCCceEEcCC--CC--EEEEehHHhhcccccCCCC-------CCCCEEecHHHHHHhCCCCCc-
Confidence 45567788899999999999999874 77 9999999999754332222 22343 55555544433321
Q ss_pred hHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccC-CCCCCchHHHHHHHHHHhcCCCCChhhHHHHH
Q 007773 493 DIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRK-TLKDESVIEQIVREAQDAVLPGTSEDGFLESV 571 (590)
Q Consensus 493 d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~-~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~ 571 (590)
....++. +-.+.+.+||-..-.| .-+-++|.-. .+..-+.-+..+..-++.+.+..+|..--+.+
T Consensus 201 ~~~~F~~----~c~~~~~~LR~~~~~i----------l~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~ 266 (293)
T cd05168 201 LFNYFKK----LFLKGFMALRKHVDRI----------ILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFV 266 (293)
T ss_pred hhHHHHH----HHHHHHHHHHhchHHH----------HHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHH
Confidence 1122222 1122233333322222 1222222221 11110101233444555567778888777777
Q ss_pred HHHHHHHhhh
Q 007773 572 ASIMDRHLDD 581 (590)
Q Consensus 572 ~~~~~~~~~~ 581 (590)
..+++..++.
T Consensus 267 ~~lI~~s~~~ 276 (293)
T cd05168 267 DELINQSLDN 276 (293)
T ss_pred HHHHHHHHhc
Confidence 7777776654
No 112
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=94.98 E-value=0.14 Score=55.40 Aligned_cols=144 Identities=20% Similarity=0.248 Sum_probs=78.1
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChH
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAE 491 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~ 491 (590)
.+.-.+|+=|++.=.|||.||||+..+ |+ ++-||-|++|-..-+-..+ -| -..|| +++.++.+-..+.+
T Consensus 194 S~A~ysv~~YiLgigDRH~~NILi~~~--G~--~~HIDFG~ilg~~~~~~~~----~~-E~~PFrLT~~mv~~mGg~~s~ 264 (352)
T cd00891 194 SCAGYCVATYVLGIGDRHNDNIMLTKT--GH--LFHIDFGHFLGNFKKKFGI----KR-ERAPFVLTPDMAYVMGGGDSE 264 (352)
T ss_pred hHHHHHHHHHHccccccCCCceEECCC--CC--EEEEehHHhhccCCccCCC----CC-CCCCeeecHHHHHHhCCCCCc
Confidence 355577888999999999999999864 87 9999999999533211110 01 23455 67666665544422
Q ss_pred HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHH
Q 007773 492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESV 571 (590)
Q Consensus 492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~ 571 (590)
.. ..++. +-.+.+.+||-..-+| ..+-++|.-..+..-+. +.-+...++...++.+|..-.+.+
T Consensus 265 ~~-~~F~~----~c~~~~~~LR~~~~~i----------l~l~~lm~~~~lp~~~~-~~~i~~l~~r~~l~~s~~~a~~~~ 328 (352)
T cd00891 265 KF-QRFED----LCCKAYNILRKHGNLF----------INLFSLMLSAGIPELQS-IEDIEYLRDALALDKSDEEATEYF 328 (352)
T ss_pred cc-chHHH----HHHHHHHHHhcCHHHH----------HHHHHhhccCCCCccCc-HHHHHHHHHHhCCCCCHHHHHHHH
Confidence 11 11111 0022222222222211 12222222221111111 123445556677888888888888
Q ss_pred HHHHHHHhhhc
Q 007773 572 ASIMDRHLDDL 582 (590)
Q Consensus 572 ~~~~~~~~~~~ 582 (590)
.++++.-++..
T Consensus 329 ~~lI~~s~~~~ 339 (352)
T cd00891 329 RKLIHESLNSK 339 (352)
T ss_pred HHHHHHHHhcc
Confidence 88887777654
No 113
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=94.90 E-value=0.038 Score=48.38 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=44.1
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE-CC-EEcCCCCcccccCC
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-DG-EELEDQRLITDICK 172 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif-~G-k~LeD~~tL~dy~I 172 (590)
.++.++.+.+.||.+||++++....-| ++.|+|+. .. +.|+|.++|+|+|.
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRP--VNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCC--CcchheeecCHHHHhhccchhhhccc
Confidence 356678999999999999999998877 99999997 44 67899999999964
No 114
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=94.57 E-value=0.32 Score=52.50 Aligned_cols=146 Identities=17% Similarity=0.166 Sum_probs=79.2
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccCh-HH
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDA-EK 492 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~-~~ 492 (590)
..---+|.=|++.=.|||.||||+.++ |+ ++-||=|+.|-.. .+|+++.+..+--+|++|.++.+..-+. ..
T Consensus 194 S~AgYsV~tYiLgIgDRHndNImi~~~--Gh--lfHIDFG~iLg~~---~~~g~~~re~~PF~Lt~emv~vm~gg~~~S~ 266 (354)
T cd00895 194 SCAGCCVATYVLGICDRHNDNIMLKTT--GH--MFHIDFGRFLGHA---QMFGNIKRDRAPFVFTSDMAYVINGGDKPSS 266 (354)
T ss_pred HHHHHHHHHHHccccccCCCceeEcCC--CC--EEEEeeHHhcCCC---cccCCCCcCCCCccccHHHHHHhcCCCCCCh
Confidence 344567888999999999999999876 88 9999999999864 2344443333334457776655532221 22
Q ss_pred hHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHHH
Q 007773 493 DIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVA 572 (590)
Q Consensus 493 d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~ 572 (590)
..+.+++. --+....||-. +.. .-.+-++|.-.++..-+. ++-+...++...++.||+.=.+.+.
T Consensus 267 ~f~~F~~l----c~~ay~~lRk~-------~~~---il~L~~lM~~sgiP~l~~-~~~i~~l~~rf~l~~se~eA~~~f~ 331 (354)
T cd00895 267 RFHDFVDL----CCQAYNLIRKH-------THL---FLNLLGLMLSCGIPELSD-LEDLKYVYDALRPQDTEADATTYFT 331 (354)
T ss_pred hHHHHHHH----HHHHHHHHHHh-------HHH---HHHHHHHHHcCCCcccCc-chHHHHHHHHhCCCCCHHHHHHHHH
Confidence 23333321 01111222222 111 112222332211111111 1234455666778888887666677
Q ss_pred HHHHHHhhh
Q 007773 573 SIMDRHLDD 581 (590)
Q Consensus 573 ~~~~~~~~~ 581 (590)
++++.-++.
T Consensus 332 ~lI~~s~~s 340 (354)
T cd00895 332 RLIESSLGS 340 (354)
T ss_pred HHHHHHHhh
Confidence 777666553
No 115
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.071 Score=58.62 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=63.5
Q ss_pred ceeeeccceeeEEE-eecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 112 ITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 112 I~Vkt~~Gk~~~i~-Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
|.|| ..|+.+.++ ++.++|+..+|+++....|++ |+.|++.+.|..+.|+-.+....|+++.+|+|+-...+
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~ 78 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEA 78 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCC--ccceeEEEecccccccccccccccCCCCEEEeeccccc
Confidence 4455 467889888 999999999999999999988 99999999999999998888889999999999865443
No 116
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.34 E-value=0.14 Score=42.06 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=46.2
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L 180 (590)
.+++.+++.|.++.++.++-+..++++++. +++..|.|+++.|+-...+.-.|+.+|+.+.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~--~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLD--PSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCC--ccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 568899999999999999999999999988 88999999999999999999889999998875
No 117
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=94.24 E-value=0.34 Score=52.33 Aligned_cols=140 Identities=23% Similarity=0.335 Sum_probs=78.6
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChH
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAE 491 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~ 491 (590)
.+.-.+|.=|++.=.|||.||||+..+ |+ ++.||=|++|-.... +| | .|| +++.++.+-....+
T Consensus 193 S~A~ysvv~YiLGigDRH~~NILi~~~--G~--~~HIDFG~ilg~~p~--~~-----~---~PFrLT~~mv~~mGg~~s~ 258 (350)
T cd00896 193 SCAGYCVITYILGVGDRHLDNLLLTKD--GK--LFHIDFGYILGRDPK--PF-----P---PPMKLCKEMVEAMGGAQSE 258 (350)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEcCC--CC--EEEEEhHHhhCCCCC--CC-----C---CCeeccHHHHHHhCCCCCc
Confidence 355567888999999999999999854 87 999999999964322 11 1 443 55555444322211
Q ss_pred HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCC-CCchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773 492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLK-DESVIEQIVREAQDAVLPGTSEDGFLES 570 (590)
Q Consensus 492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~-~~s~le~~~~~a~~~~~~~~~~~~f~~~ 570 (590)
..+.++. +-...+.+||-..-++ +++ -++|.-..+. ..+.-+..+..-++...++.+|..-.+.
T Consensus 259 -~~~~F~~----~c~~~~~~lR~~~~~i-------l~l---~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~~~ 323 (350)
T cd00896 259 -GYQEFKS----YCCEAYNILRKSANLI-------LNL---FSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAIKH 323 (350)
T ss_pred -chHHHHH----HHHHHHHHHHhCHHHH-------HHH---HHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 1122222 1122233333222221 112 2222222111 1122355666777777888888887888
Q ss_pred HHHHHHHHhhhc
Q 007773 571 VASIMDRHLDDL 582 (590)
Q Consensus 571 ~~~~~~~~~~~~ 582 (590)
+.++++.-++.+
T Consensus 324 ~~~lI~~s~~~~ 335 (350)
T cd00896 324 FQNLINDSVNAL 335 (350)
T ss_pred HHHHHHHHHhhh
Confidence 888877776654
No 118
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.12 E-value=0.16 Score=48.95 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=56.3
Q ss_pred EEEEE-EeCC----eEEEEEecCCCCHHHHHHHHHHhhCCCccce-EEEEc-Ccccc-cCCccccccCcccc----ccee
Q 007773 34 ILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQ-KLVFE-GRELA-RSNSRVRDYGLADG----NVLH 101 (590)
Q Consensus 34 M~I~V-tl~G----~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~Q-rLvf~-Gk~L~-~D~~tL~dygI~~g----stL~ 101 (590)
|+|+| +++| .++.+.+.++.||.+|+..|....+++...| .|++. ++.|. .++..+..+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 68899 8899 6899999999999999999999999998875 45553 55552 24555665554333 3677
Q ss_pred EEeeeccc
Q 007773 102 LVLRLSDL 109 (590)
Q Consensus 102 LvlrLsd~ 109 (590)
|.+++.|+
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 77777654
No 119
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=93.95 E-value=0.12 Score=43.51 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=49.9
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCC-CCC---cEEEE-ECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFV-DLK---NQELI-CDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~-~~~---~Q~Li-f~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
.+|+|...+|+.+-+.+..+.+|..+...|.+..+.+. +.. .-+|. -+|..|.++++|++++|.+|+++.|.
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 35666655568899999999999999999999888531 122 24566 68999999999999999999999873
No 120
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=93.66 E-value=0.19 Score=41.31 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=45.9
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeE
Q 007773 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~L 102 (590)
..+++...+.|.|+.++.+|-+..-+++|+.+++-.|.++++.|. -+.+++-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ld-lslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLD-LSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEES-SS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEec-cccceeecCCCCCCEEeC
Confidence 567899999999999999999999999999999889999999996 889999999999988764
No 121
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.47 Score=42.03 Aligned_cols=77 Identities=14% Similarity=0.316 Sum_probs=67.7
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.-+.+.| -.++.+..+.|..+.....|+..-.+..|++....+++|+|+.+. ...|-.+.+..+|+.|.++....++
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~-~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR-ETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC-CCCChhhhCCcCCcEEEEEeecccC
Confidence 4566666 466788899999999999999999999999999999999999997 8899999999999999988765544
No 122
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=0.098 Score=52.03 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=57.8
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCccccccee
Q 007773 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101 (590)
Q Consensus 35 ~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~ 101 (590)
+..++.+++.+.+.+...||+.++|.+++++.|+.+..|+++|+|..|- |...|..++|+.|....
T Consensus 149 k~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYv 214 (231)
T KOG0013|consen 149 KLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYV 214 (231)
T ss_pred HHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEE
Confidence 3333556778889999999999999999999999999999999999998 89999999999995443
No 123
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=93.32 E-value=0.15 Score=45.08 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=39.3
Q ss_pred eeEEEee--cCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCccccc
Q 007773 121 VFEFHVE--RGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI 170 (590)
Q Consensus 121 ~~~i~Vd--~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy 170 (590)
.+.+++. .+.||..||++|.+...-...-..++|+|+|+.|.|...++..
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 3666666 7889999999999998423235688999999999998777653
No 124
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=93.30 E-value=0.22 Score=42.03 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=47.3
Q ss_pred EEEEEEeC-CeEEEEEecCCCCHHHHHHHHHHhhCCCccc------eEEE-EcCcccccCCccccccCcccccceeE
Q 007773 34 ILIFLSVG-GSVIPMRVMESDSIASVKLRIQSYNGFFVKK------QKLV-FEGRELARSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 34 M~I~Vtl~-G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~------QrLv-f~Gk~L~~D~~tL~dygI~~gstL~L 102 (590)
++|+|... |+.+.+.+..+.+|+.|...|-+..+.+... -.|. -+|..|. ++.+|+++||.+|+++.|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-PDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-TTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-CcCcHhHcCCCCCCEEEe
Confidence 45666444 5899999999999999999999987764322 2344 4588897 899999999999999976
No 125
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=93.26 E-value=0.49 Score=51.26 Aligned_cols=143 Identities=22% Similarity=0.295 Sum_probs=75.8
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCC--CCHHHHHHHHc--cCh
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQP--YSPETINYINA--LDA 490 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~P--fs~~~~~~i~~--Ld~ 490 (590)
.--.+|.=|++.=.|||.||||+..+ |+ ++-||-|++|-..-. .|. ..| ...| ++++.++.+.. ...
T Consensus 200 ~AgysVvtYiLGIGDRHn~NILi~~~--G~--l~HIDFG~ilg~~~~--~~~--~~~-E~vPFkLT~e~v~vmg~G~~~~ 270 (361)
T cd05174 200 CAGYCVATYVLGIGDRHSDNIMIRES--GQ--LFHIDFGHFLGNFKT--KFG--INR-ERVPFILTYDFVHVIQQGKTNN 270 (361)
T ss_pred HHHHHHHHHHhcccCcCccceeEcCC--CC--EEEEehHHhhcCCcc--cCC--CCC-CCCCeeccHHHHHHHccCCCCC
Confidence 44567788889999999999999764 87 999999999964211 010 001 1234 45555444421 111
Q ss_pred HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773 491 EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLES 570 (590)
Q Consensus 491 ~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~ 570 (590)
+.....++. +-..+..+||-..-++ +++.+ ||.-..+..-.. +.-++.-++...++.||+.-.+.
T Consensus 271 s~~f~~F~~----~c~~a~~~LRk~~~~i-------l~l~~---lM~~sgip~~~~-~~~i~~l~~~~~l~~se~ea~~~ 335 (361)
T cd05174 271 SEKFERFRG----YCEQAYKILRRHGTLF-------LHLFA---LMKAAGLPELNC-SKDIQYLKDSLALGKTEEEALKH 335 (361)
T ss_pred CchhhHHHH----HHHHHHHHHHhhHHHH-------HHHHH---HHhcCCCCccCc-hhHHHHHHHHhCCCCCHHHHHHH
Confidence 222223332 1123333333322221 22222 232111111000 23455666677888898887777
Q ss_pred HHHHHHHHhhh
Q 007773 571 VASIMDRHLDD 581 (590)
Q Consensus 571 ~~~~~~~~~~~ 581 (590)
+...+++-+.+
T Consensus 336 f~~~i~~s~~~ 346 (361)
T cd05174 336 FRVKFNEALRE 346 (361)
T ss_pred HHHHHHHHHhh
Confidence 77777776654
No 126
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.2 Score=49.83 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=55.8
Q ss_pred EEEEEEe--CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE-EcC-----cccccCCccccccCcccccceeEEe
Q 007773 34 ILIFLSV--GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEG-----RELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 34 M~I~Vtl--~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv-f~G-----k~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
++++|+. +.-...-+..++.||+++|.|++...|.++..+.|. |.| ..|++++..|..|+..+|-.||++=
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 4566633 322345567789999999999999999999999987 444 3488788999999999999888754
No 127
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=92.71 E-value=0.72 Score=49.91 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=35.0
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~ 458 (590)
...-.+|.=|++.=-|||.||||+.++ |+ ++-||-|++|-.
T Consensus 193 S~A~ysvv~YiLgigDRH~~NILl~~~--G~--l~HIDFG~~lg~ 233 (353)
T cd05166 193 SCAGCCVATYVLGICDRHNDNIMLTKS--GH--MFHIDFGKFLGH 233 (353)
T ss_pred HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEeeHHhccc
Confidence 345577888999999999999999864 87 999999999974
No 128
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=92.71 E-value=0.48 Score=39.79 Aligned_cols=72 Identities=22% Similarity=0.239 Sum_probs=58.9
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccc-eEEE--EcCcccccCC-ccccccCcccccceeE
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLV--FEGRELARSN-SRVRDYGLADGNVLHL 102 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLv--f~Gk~L~~D~-~tL~dygI~~gstL~L 102 (590)
.+...|.| ..+|+.+.-...+++||.+|..-|......+... -.|+ |-.+.+..++ .+|++.|+..+.+|++
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 45678888 6688999999999999999999999887776654 5565 5577787555 7999999999998876
No 129
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=92.58 E-value=0.93 Score=49.09 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=35.5
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
.+--.+|.=|++.=.|||.||||+..+ |+ ++-||-|++|-..
T Consensus 194 S~AgysvvtYiLGigDRHn~NILi~~~--G~--~~HIDFG~ilg~~ 235 (354)
T cd05177 194 SCAGWCVVTFILGVCDRHNDNIMLTHS--GH--MFHIDFGKFLGHA 235 (354)
T ss_pred HHHHHHHHHHHhcccCcCCCceeEcCC--CC--EEEEehHHhcCCC
Confidence 345567888999999999999999864 87 9999999999754
No 130
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=91.96 E-value=0.8 Score=38.45 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=54.7
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCc-EEEE--ECCEEcCCC--CcccccCCCCCCEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELI--CDGEELEDQ--RLITDICKRNEAVIHL 180 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~-Q~Li--f~Gk~LeD~--~tL~dy~I~~gsvI~L 180 (590)
.+|.||..+|+.+.-....++||.+|.+-|......+ ... ..|+ |-.+.+.+. .+|.+.++...++|++
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~--~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSP--EESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCT--TTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCC--CCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4566677778888888889999999999998887655 333 6675 677888654 5999999999999886
No 131
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=91.95 E-value=0.77 Score=49.83 Aligned_cols=41 Identities=39% Similarity=0.479 Sum_probs=34.3
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~ 458 (590)
..--.+|.=|++.=.|||.||||+..+ |+ ++-||=|++|-.
T Consensus 199 S~AgYsvvtYILGIGDRHn~NILi~~~--G~--l~HIDFG~ilg~ 239 (362)
T cd05173 199 SCAGYCVATYVLGIGDRHSDNIMVRKN--GQ--LFHIDFGHILGN 239 (362)
T ss_pred HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEehHHhhcc
Confidence 344566788889999999999999764 87 999999999964
No 132
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=91.76 E-value=1.2 Score=48.23 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=35.7
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
.+---+|.=|++.=.|||.||||+..+ |+ ++-||=|++|-..
T Consensus 193 S~AgYsv~tYiLGIgDRHn~NILi~~~--Gh--l~HIDFG~ilg~~ 234 (353)
T cd05176 193 SCAGCCVATYVLGICDRHNDNIMLRST--GH--MFHIDFGKFLGHA 234 (353)
T ss_pred HHHHHHHHhhhccccCcCCcceEEcCC--CC--EEEEeeHHhcCCC
Confidence 355577888999999999999999765 87 9999999999753
No 133
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=90.93 E-value=0.92 Score=43.79 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=52.1
Q ss_pred ccceeeeccc----eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCc-EEEEE-CCEEc--CCCCcccccCCCCC----CE
Q 007773 110 QAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELIC-DGEEL--EDQRLITDICKRNE----AV 177 (590)
Q Consensus 110 m~I~Vkt~~G----k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~-Q~Lif-~Gk~L--eD~~tL~dy~I~~g----sv 177 (590)
|+|+|++++| .++.+.+..+.||.+|+.+|....+++ ... +.|++ .++.| .+...++.+.-.++ .+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~ 78 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFIT 78 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCC--ccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceE
Confidence 5789999999 588899999999999999999999977 555 45665 35555 45555666553333 34
Q ss_pred EEEEee
Q 007773 178 IHLLVR 183 (590)
Q Consensus 178 I~L~vr 183 (590)
++|.++
T Consensus 79 l~l~~r 84 (162)
T PF13019_consen 79 LRLSLR 84 (162)
T ss_pred EEEEEe
Confidence 555555
No 134
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=90.83 E-value=1.3 Score=48.05 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=77.9
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccCh--
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDA-- 490 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~-- 490 (590)
.---+|.=|++.=.|||.||||+..+ |+ ++.||-|++|-.. .+| .-+-.-..|| +++.++.+-....
T Consensus 204 ~AgYsV~tYiLGIgDRHndNImi~~~--G~--lfHIDFG~ilg~~---~~~--~gi~~E~~PFkLT~e~v~vmg~~gg~~ 274 (365)
T cd00894 204 CAGYCVATFVLGIGDRHNDNIMITET--GN--LFHIDFGHILGNY---KSF--LGINKERVPFVLTPDFLFVMGTSGKKT 274 (365)
T ss_pred hHHHHHHHHhccccCccccceeEcCC--CC--EEEEeeHHhhCCC---Ccc--CCCCCCCCCeeecHHHHHHhCccCCcC
Confidence 44456777899999999999999865 87 9999999999642 111 1111234454 5555544432211
Q ss_pred HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCC---CCCCchHHHHHHHHHHhcCCCCChhhH
Q 007773 491 EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKT---LKDESVIEQIVREAQDAVLPGTSEDGF 567 (590)
Q Consensus 491 ~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~---~~~~s~le~~~~~a~~~~~~~~~~~~f 567 (590)
......+++ +-.++...||-..-+ .--+-+||.-.+ +..... +..-++...++.||+.=
T Consensus 275 s~~f~~F~~----~c~~a~~~LRk~~~l----------il~L~~lM~~sgip~l~~~~~----i~~l~~~~~l~~se~eA 336 (365)
T cd00894 275 SLHFQKFQD----VCVKAYLALRHHTNL----------LIILFSMMLMTGMPQLTSKED----IEYIRDALTVGKSEEDA 336 (365)
T ss_pred ChhHHHHHH----HHHHHHHHHHhhHHH----------HHHHHHHHhcCCCcccCcchH----HHHHHHHhCCCCCHHHH
Confidence 122233332 112333333333222 122233443322 222233 44556667788888877
Q ss_pred HHHHHHHHHHHhhh
Q 007773 568 LESVASIMDRHLDD 581 (590)
Q Consensus 568 ~~~~~~~~~~~~~~ 581 (590)
.+.+.+++..-++.
T Consensus 337 ~~~f~~~I~~s~~~ 350 (365)
T cd00894 337 KKHFLDQIEVCRDK 350 (365)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777776654
No 135
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=90.59 E-value=0.56 Score=41.56 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=37.0
Q ss_pred EEEEec--CCCCHHHHHHHHHHhhC--CCccceEEEEcCcccccCCcccccc
Q 007773 45 IPMRVM--ESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDY 92 (590)
Q Consensus 45 ~~l~V~--~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dy 92 (590)
.+++|. .+.||..||..|.+..+ ..-..++|+|+|+.|. |+..|..-
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~~ 64 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSSE 64 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhhh
Confidence 556666 78999999999999973 4556679999999998 66665543
No 136
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=90.47 E-value=1.3 Score=48.13 Aligned_cols=144 Identities=23% Similarity=0.286 Sum_probs=76.2
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccCh-
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDA- 490 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~- 490 (590)
..--.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|-..-+ +|. +---..|| +++.++.+.....
T Consensus 203 S~AgysvvtYiLGigDRH~~NILi~~~--G~--l~HIDFG~ilg~~~~--~~~---i~~E~~PFkLT~emv~~mg~~~~~ 273 (366)
T cd05165 203 SCAGYCVATFVLGIGDRHNDNIMVKET--GQ--LFHIDFGHILGNYKS--KFG---INRERVPFVLTPDFVHVIGRGKKD 273 (366)
T ss_pred HHHHHHHHHHHhhccccCCcceEEcCC--CC--EEEEehHHhhccCCc--cCC---CCCCCCCeeecHHHHHHhcccCCc
Confidence 345567888999999999999999864 87 999999999943211 110 00123444 4444443332111
Q ss_pred --HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHH
Q 007773 491 --EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFL 568 (590)
Q Consensus 491 --~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~ 568 (590)
......++. +-...+.+||-..-++ +++ -+||.-.++..-+. +.-+..-++....+.||+.-.
T Consensus 274 ~~s~~f~~F~~----~c~~a~~~LR~~~~~i-------l~l---~~lM~~s~ip~~~~-~~~i~~lr~rf~l~~se~eA~ 338 (366)
T cd05165 274 NTSEHFQRFQD----LCEKAYLALRRHGNLL-------IIL---FSMMLMSGLPELTS-KEDIEYLRDTLALGKSEEEAL 338 (366)
T ss_pred CCChhhhHHHH----HHHHHHHHHHhCHHHH-------HHH---HHHHhcCCCcccCc-hhHHHHHHHHhCCCCCHHHHH
Confidence 112223332 1133333343332222 112 22332221111010 233555566677788888777
Q ss_pred HHHHHHHHHHhhh
Q 007773 569 ESVASIMDRHLDD 581 (590)
Q Consensus 569 ~~~~~~~~~~~~~ 581 (590)
+.+..++..-++.
T Consensus 339 ~~f~~~I~~s~~~ 351 (366)
T cd05165 339 KYFLDKFNEALDG 351 (366)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777663
No 137
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=90.32 E-value=1.4 Score=37.14 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=55.6
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccccC--CccccccCcccccceeE
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstL~L 102 (590)
...+|.| ..+|+.+.-....++||.+|..-|....+.....-.|+ |-.+.+.++ +.+|.+.|+..+.++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4567888 56889999999999999999999976666655556665 557777643 47999999988877754
No 138
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.90 E-value=1.5 Score=37.20 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=53.0
Q ss_pred CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCC-ccceEEE--EcCcccccCCccccccCcccccce
Q 007773 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLV--FEGRELARSNSRVRDYGLADGNVL 100 (590)
Q Consensus 33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip-~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstL 100 (590)
..+|.| ..+|+.+.-++..++||.+|..-|....+-+ .....|. |-.+.|.+++.||++.|+.+..++
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 457788 5688999999999999999999999875432 2334565 668889877899999999865443
No 139
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=89.68 E-value=0.3 Score=50.96 Aligned_cols=139 Identities=23% Similarity=0.294 Sum_probs=65.9
Q ss_pred ccCCC--CCcEEEEEeCCC-CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcCCCccCCCchhhhhhhhhhccCCCCccc
Q 007773 274 PSSEG--SGGAYFMQDSSG-QKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYS 350 (590)
Q Consensus 274 ~~~~G--s~Gsyf~~~~~g-~~~~aVFKP~deEp~~~~nP~~~~~~~~~~g~~~g~~~g~g~~rEvAAylLD~~~~~~~~ 350 (590)
++..| |||+||+...+| ....+|.|+..- -..|+=||+|-.
T Consensus 32 ~s~~g~ns~gv~fv~~f~~~~~~avViK~s~t-----------------------------~~~E~~~s~La~------- 75 (275)
T PF09192_consen 32 HSEHGVNSGGVFFVATFSGSKEEAVVIKFSST-----------------------------IQQEVFASELAR------- 75 (275)
T ss_dssp EEEE-STTS-EEEEEETTE----EEEEE--TT-----------------------------HHHHHHHHHHHH-------
T ss_pred hhccccCCCCEEEEEEcCCCceEEEEEecCCc-----------------------------hHHHHHHHHHHH-------
Confidence 34455 999999996654 235889997633 478999999974
Q ss_pred ccccccCCCCCCceEEEEecccCccCC-----------CCCC---CCCCCccceEEeecccccCCcccCCCC-CCC----
Q 007773 351 LHDEERGFAGVPPTVMVRCLHKGFNHP-----------NGYK---HDLENVKIGSLQMFVENVGSCEEMGPR-AFP---- 411 (590)
Q Consensus 351 ~~~~~~gf~~VP~T~lv~~~~~~f~~~-----------~~~~---~~~~~~k~GSlQ~fv~~~~~~~~~~~~-~f~---- 411 (590)
.||. -+|--.+++.+.+-|.-- +.-. ...+..-.=-+++||++. ...++... .|.
T Consensus 76 ----~Lgv-~~P~~Rii~~~~~E~~e~~~~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G~-~L~e~~~~~~f~~~~~ 149 (275)
T PF09192_consen 76 ----WLGV-PTPQMRIIESSSSEFQEMSEALLFATSNDDELGDFICSELDKAFFLIMEYVPGK-PLNELNHKEYFSPEKS 149 (275)
T ss_dssp ----HCT------EEEEESSSHHHHHHHHHHH----HH-SSS-HHHHHCT-SEEEEEE---EE-ESTT--SS--SHHHHS
T ss_pred ----HhCC-CCCceeeeecCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC-CccccCcccccCCcch
Confidence 5674 566667776544322100 0000 000111112456777752 23333322 232
Q ss_pred ----hhhhhheeeeeeeeecCCCCC------------CcEEEeccCCCceEEEeeccCCc
Q 007773 412 ----VDEVHKISVLDIRLANTDRHA------------GNILVSKDEGGQIKLVPIDHGYC 455 (590)
Q Consensus 412 ----~~ev~ki~ilD~~i~N~DR~~------------gNiLv~~~~~g~~~l~pIDhGl~ 455 (590)
..++-||.+||+.++|.||-. .|||+....+| ..+..||..++
T Consensus 150 ~~~~~~~LG~ii~fDi~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~~-~~~~~i~~~i~ 208 (275)
T PF09192_consen 150 GEKRLEQLGRIIAFDIFINNFDRLPCRILNWRNEGNPSNILFYEKPNG-WYFSLIDSNIT 208 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHT--SSS----SSS-S---GGGEEEESB--T-T-EEE-S----
T ss_pred HHHHHHHHHhHHhhhhhhcCcccCcccccccCCCCChhheEEeccccc-ceeeecccccc
Confidence 246889999999999999966 56888765333 35788888775
No 140
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.55 E-value=0.73 Score=46.03 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=55.5
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L 180 (590)
.+++.+.+.+...+||.++|.++..+.++. +-.|+++|+|..|-|...|..+.+++|+--.+
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVD--PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccc--hhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 367889999999999999999999999977 88999999999999999999999999954443
No 141
>COG5417 Uncharacterized small protein [Function unknown]
Probab=89.43 E-value=1.7 Score=36.70 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=54.1
Q ss_pred CEEEEE---EeCCeEEEEEecCCCCHHHHHHHHHHhhCCC-----ccceEEEEcCcccccCCccccccCcccccceeE
Q 007773 33 SILIFL---SVGGSVIPMRVMESDSIASVKLRIQSYNGFF-----VKKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 33 sM~I~V---tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip-----~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~L 102 (590)
.|.|+| .-+|.++.++++...+|..+-..+-+...+. -.+.+..-.++.|. ++..|.+|+|.+|+.+.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~lls-gd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLS-GDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEec-CCceEEeccccCCCEEEe
Confidence 356666 2478999999999999999988777665543 23446777899998 888999999999998754
No 142
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=88.25 E-value=3.8 Score=41.15 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCEEEEEEeCC----eEEEEEecCCCCHHHHHHHHHHhhCCCcc---ceEEE--EcCcc---cccCCccccccCcccccc
Q 007773 32 DSILIFLSVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKLV--FEGRE---LARSNSRVRDYGLADGNV 99 (590)
Q Consensus 32 ~sM~I~Vtl~G----~t~~l~V~~sdTV~~LK~kIq~~~Gip~~---~QrLv--f~Gk~---L~~D~~tL~dygI~~gst 99 (590)
..|+++...++ +.+.+.|..+.||.+|..+++.+.+++.. +.+|+ ++++. +. .+..|... .+...
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l--~~~~~ 95 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL--NDYIT 95 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TTE
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc--cCcce
Confidence 34666663222 35888899999999999999999998765 33443 45554 54 55666655 22222
Q ss_pred eeEEeeec----------ccccceeee-------ccceeeEEEeecCCcHHHHHHHHHHhcCCC
Q 007773 100 LHLVLRLS----------DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (590)
Q Consensus 100 L~LvlrLs----------d~m~I~Vkt-------~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~ 146 (590)
+.+-.-.. +.+.|.|-. .-|-.|.+.|.++.|..++|+||+++.|++
T Consensus 96 ~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~ 159 (213)
T PF14533_consen 96 LRIEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVS 159 (213)
T ss_dssp EEEEE--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---
T ss_pred eeeecCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCC
Confidence 22211111 112233321 347788899999999999999999999976
No 143
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=88.21 E-value=1.9 Score=36.29 Aligned_cols=69 Identities=6% Similarity=0.000 Sum_probs=51.6
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCC---CCcccccCCCCCCEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL 180 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~LeD---~~tL~dy~I~~gsvI~L 180 (590)
-+|.||..+|+.+.-....++|+.+|.+-|....+.. .....|+ |-.+.+.+ +.+|.+.++...++|.+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4566777778878878889999999999996655543 4456665 66777754 47899999888888775
No 144
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.77 E-value=2.1 Score=36.37 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=51.5
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCC-CCcccccCCCCCCEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH 179 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~LeD-~~tL~dy~I~~gsvI~ 179 (590)
-+|.||..+|+.+.-....++||++|.+-|....+.. ......|. |-.+.|.| +.||.|.++.+..++.
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~-~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~q 76 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF-AARPFTLMTAFPVKELSDESLTLKEANLLNAVIVQ 76 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC-CCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEEE
Confidence 3577788888888888889999999999998875432 13455665 66787754 8899999988655443
No 145
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=87.69 E-value=0.53 Score=48.03 Aligned_cols=61 Identities=26% Similarity=0.291 Sum_probs=38.8
Q ss_pred EEeecccccCCcccCCCCC---CC---hhhhhheeeeeeeeecCCC----------CCCcEEEecc--CCCceEEEeecc
Q 007773 391 SLQMFVENVGSCEEMGPRA---FP---VDEVHKISVLDIRLANTDR----------HAGNILVSKD--EGGQIKLVPIDH 452 (590)
Q Consensus 391 SlQ~fv~~~~~~~~~~~~~---f~---~~ev~ki~ilD~~i~N~DR----------~~gNiLv~~~--~~g~~~l~pIDh 452 (590)
-+++||++..-.+...... .. ..++-||-+||+.++|.|| |.+|||++.. .+|. .+-+||-
T Consensus 94 limeYv~G~~l~~~~~~~~s~~~~~~~~~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~~~~~~~-~~~~~d~ 172 (238)
T cd05124 94 LIMEYVPGITLFKMTTHRASEYKGEERLIQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDIPNKNGA-TEDLIDS 172 (238)
T ss_pred eeeeecCCccchhhccccccchhhHHHHHHhhhhheeeeeecCCCCCCccccccCCCcceEEEEcccCcCCC-ceeeccc
Confidence 4678888755433322211 11 2468899999999999998 6678998764 1222 3555654
No 146
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=87.42 E-value=4.4 Score=44.08 Aligned_cols=42 Identities=38% Similarity=0.474 Sum_probs=35.1
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
.+---+|.=|++.=.|||.||||+..+ |+ ++.||=|++|-..
T Consensus 202 S~AgYsV~tYiLGIgDRHndNImi~~~--G~--l~HIDFG~iLg~~ 243 (366)
T cd05175 202 SCAGYCVATFILGIGDRHNSNIMVKDD--GQ--LFHIDFGHFLDHK 243 (366)
T ss_pred HHHHHHHHHHHhcccccCccceeEcCC--CC--EEEEehHHhhcCC
Confidence 345567788899999999999999875 87 9999999999643
No 147
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=87.09 E-value=3.4 Score=34.18 Aligned_cols=63 Identities=17% Similarity=0.107 Sum_probs=49.6
Q ss_pred eeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE----C--CEEcCCCCcccccCCCCCCE
Q 007773 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----D--GEELEDQRLITDICKRNEAV 177 (590)
Q Consensus 114 Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif----~--Gk~LeD~~tL~dy~I~~gsv 177 (590)
|+..+|....++|+++.|+.++=++|+...++. ..+---|.| + ...|+..++|.++.......
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~ 69 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPP 69 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCCCC
Confidence 566889999999999999999999999999986 367778888 2 24477888888887653333
No 148
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=86.85 E-value=3.2 Score=36.23 Aligned_cols=66 Identities=26% Similarity=0.296 Sum_probs=45.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE-c---Ccc-cccCCccccccCcccccceeEEeeeccc
Q 007773 43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-E---GRE-LARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 43 ~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf-~---Gk~-L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
..++..++..|||..|+..+.+.+.| ...-||-- + +.+ |.+.+.||.+.||.+|.+|.+-.+-.||
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 46778899999999999999999999 55567763 2 233 6556789999999999998887776654
No 149
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.16 E-value=0.7 Score=53.69 Aligned_cols=68 Identities=29% Similarity=0.517 Sum_probs=45.2
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChH
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAE 491 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~ 491 (590)
+---.+.=|++-=-|||.||||+..+ |+ ++-||-|+-|-.+..-.-|+ -|-.-|+.|.++.+--||.+
T Consensus 687 lagYSLvcYlLQvKDRHNGNILiD~E--GH--IIHIDFGFmLsnsPgnvgFE-----sAPFKLT~EylEvmgG~~~d 754 (847)
T KOG0903|consen 687 LAGYSLVCYLLQVKDRHNGNILIDEE--GH--IIHIDFGFMLSNSPGNVGFE-----SAPFKLTTEYLEVMGGLDSD 754 (847)
T ss_pred HHHHHHHHHhhhcccccCCceEecCC--CC--EEEEeeeeEecCCCCCcccc-----cCchhhHHHHHHHhcCCcHH
Confidence 34445667888889999999999775 77 99999999998775544441 12223355545444444443
No 150
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=85.68 E-value=3.9 Score=34.08 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=49.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCccccc--CCccccccCccccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGN 98 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~--D~~tL~dygI~~gs 98 (590)
.+|.| ..+|+.+.-+...++||.+|..-|.....- ...-.|+ |-.+.+.+ .+.+|.+.|+.+..
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 46777 568899999999999999999999877543 3344555 55777764 58899999998443
No 151
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=84.34 E-value=1.6 Score=44.80 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=48.3
Q ss_pred ccceeeeccc-eeeE-EEeecCCcHHHHHHHHHHh-cCCCCCCCcEEEE----ECCEEcCCCCcccccCCCCCCEEEE
Q 007773 110 QAITVTTVCG-KVFE-FHVERGRNVGYVKQQIAKK-GREFVDLKNQELI----CDGEELEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 110 m~I~Vkt~~G-k~~~-i~Vd~s~TV~~LK~kI~~~-~gi~~~~~~Q~Li----f~Gk~LeD~~tL~dy~I~~gsvI~L 180 (590)
|.|++...++ ...+ .+...+.|+.+++++|..+ .++. +..+++. -+|+.|-|+.+|.+||..++++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~--~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKIT--PYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccC--ccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4455555443 2233 5677788999999776555 4554 4444443 4899999999999999999988875
No 152
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=83.88 E-value=4.2 Score=34.87 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=39.9
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCc-cceEEEEcCcc
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFEGRE 81 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~-~~QrLvf~Gk~ 81 (590)
|+|.++.+|.++.+.+.++.+..+|+.+|+++.++.. ....|.|-..+
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 5677888999999999999999999999999999864 45566675443
No 153
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=83.88 E-value=1.6 Score=44.80 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=46.2
Q ss_pred EEEEE-EeCC-eEEE-EEecCCCCHHHHHHHHHHh-hCCCccceEEE----EcCcccccCCccccccCcccccce
Q 007773 34 ILIFL-SVGG-SVIP-MRVMESDSIASVKLRIQSY-NGFFVKKQKLV----FEGRELARSNSRVRDYGLADGNVL 100 (590)
Q Consensus 34 M~I~V-tl~G-~t~~-l~V~~sdTV~~LK~kIq~~-~Gip~~~QrLv----f~Gk~L~~D~~tL~dygI~~gstL 100 (590)
|.|++ +.++ -..+ ...+...||.+++.++.++ ..+.+..+++. -.|+.|. |+++|++|+...+.++
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~-~~s~l~e~~~~s~~~i 74 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI-DNSKLQEYGDGSGATI 74 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc-chhHHHHhccCCCCEE
Confidence 56777 4443 2344 5677899999999766555 55666555444 3599998 8899999998777544
No 154
>COG5417 Uncharacterized small protein [Function unknown]
Probab=83.77 E-value=4.6 Score=34.16 Aligned_cols=67 Identities=6% Similarity=0.069 Sum_probs=55.2
Q ss_pred eeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCC---CcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---KNQELICDGEELEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 114 Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~---~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L 180 (590)
++.-.|.++-+.+....+|..+-.-+.+...+..+. .+.++.-.++.|.++..|.||+|.+|+.+.+
T Consensus 11 ~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 11 FTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 344578999999999999999998888877643212 4678889999999999999999999999875
No 155
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.93 E-value=5.7 Score=33.53 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=51.4
Q ss_pred cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCC---CCcccccCCCCCCEEEE
Q 007773 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL 180 (590)
Q Consensus 111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~LeD---~~tL~dy~I~~gsvI~L 180 (590)
+|.||..+|+.+.-....++|+.+|.+-|....+. .....|+ |--+.+.+ ..+|.+.++.+.++|.+
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~---~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN---GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC---CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 46677777877777778899999999999876542 2445565 67788853 58999999998888875
No 156
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=82.61 E-value=2.2 Score=36.03 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=46.8
Q ss_pred eecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccC-CCCCCEEEEEee
Q 007773 126 VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC-KRNEAVIHLLVR 183 (590)
Q Consensus 126 Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~-I~~gsvI~L~vr 183 (590)
|.+.++|.++++-+....... ......|.++|+.|+|...|+++. ++++++|.|+..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~-~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETC-YLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCcccc-ceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 567899999999999886522 157788999999999999998885 888999998743
No 157
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.09 E-value=5.7 Score=33.51 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=53.0
Q ss_pred CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccccC--CccccccCcccccceeE
Q 007773 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (590)
Q Consensus 33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstL~L 102 (590)
..+|.| ..+|+.+.-....++|+.+|..-|+...+-. ..-.|+ |-.+.+..+ +.+|.+.|+....+|.|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 457788 5789999999999999999999999765533 334555 557777522 58999999998888765
No 158
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=82.03 E-value=0.55 Score=54.52 Aligned_cols=43 Identities=26% Similarity=0.484 Sum_probs=36.3
Q ss_pred hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
...---.|+-|++.=.|||.||||+..+ |+ |+-||-|+.|-+.
T Consensus 1135 ~S~AGYsViTYILgIgDRHngNILId~d--Gh--LfHIDFGFILg~r 1177 (1374)
T PTZ00303 1135 ASAKLFLLLNYIFSIGDRHKGNVLIGTN--GA--LLHIDFRFIFSEK 1177 (1374)
T ss_pred HHHHHHHHHHHHhccCcccCCceeEcCC--CC--EEEEecceeecCc
Confidence 3445567888999999999999999987 87 9999999999853
No 159
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=81.03 E-value=4.2 Score=35.25 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=43.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
.+...++=..++..||..++.+.|+.-+.-.+++.+..|. ++.+|.+.+++-..++.+.+
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~-~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLE-PHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceec-CCccHHHhhccccCEEEEEE
Confidence 4556677788999999999999999999999999998887 89999999999888887644
No 160
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=80.54 E-value=8.1 Score=32.13 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=48.0
Q ss_pred cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC---CCCcccccCCCCCCEE
Q 007773 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVI 178 (590)
Q Consensus 111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~Le---D~~tL~dy~I~~gsvI 178 (590)
+|.||..+|+.+.-....++||++|.+-|...... .....|+ |-.+.+. .+.+|.+.|+.+.+++
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~---~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP---AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC---CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 46677777888887888999999999999876542 3445565 5667774 4889999998844433
No 161
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=80.27 E-value=5.9 Score=34.69 Aligned_cols=69 Identities=10% Similarity=0.212 Sum_probs=58.4
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L 180 (590)
+.+.|-..+|.++.+.|..+.+-..|-...+...|-. .+..++.|+|+.++-++|-.|++.++++.|..
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~--m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKN--MSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcC--cceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 3444444678889999999999999998888888876 78999999999999999999999998887654
No 162
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=80.04 E-value=8.8 Score=33.05 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=51.5
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC--EEcC--------CCCcccccCCCCCCEE
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG--EELE--------DQRLITDICKRNEAVI 178 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G--k~Le--------D~~tL~dy~I~~gsvI 178 (590)
..+|.||..+|+.+.-....++||++|.+-|... +.. ++...|+.+= +.+. ...||.+.|+.+.++|
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~--~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KET--PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCC--CCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 3456677777777777777889999999999643 333 6778887533 6775 3679999999988887
Q ss_pred EE
Q 007773 179 HL 180 (590)
Q Consensus 179 ~L 180 (590)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 75
No 163
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=79.22 E-value=11 Score=32.57 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=53.8
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEc--Ccccc-------cCCccccccCccccccee
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA-------RSNSRVRDYGLADGNVLH 101 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~--Gk~L~-------~D~~tL~dygI~~gstL~ 101 (590)
+..+|.| ..+|+.+.-+...++||++|..-|... +..+....|+.+ -+.+. +.+.||++.|+....+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 5678888 568999999999999999999999754 445566777754 46675 246799999998776664
Q ss_pred E
Q 007773 102 L 102 (590)
Q Consensus 102 L 102 (590)
+
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 4
No 164
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=78.74 E-value=1.3 Score=44.57 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=46.2
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHcc
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINAL 488 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~L 488 (590)
.+--.+++=|++.=.|||.+|||+... +|+ ++-||=|++|-..-..... ...-.-++++..+.+-..
T Consensus 119 SlA~~s~~~YilglgDRh~~NIli~~~-~G~--~~hIDfg~~~~~~~~~~~~-----e~vPFRLT~~~~~~~g~~ 185 (219)
T cd00142 119 SLAGYSVAGYILGIGDRHPDNIMIDLD-TGK--LFHIDFGFIFGKRKKFLGR-----ERVPFRLTPDLVNALGTG 185 (219)
T ss_pred HHHHHHHHHHHhccCCCCCccEEEECC-CCe--EEEEeeHHhhCcCcCCCCC-----CCCCEeccHHHHHHhCCc
Confidence 455678889999999999999999983 377 9999999999644221110 012233466666666554
No 165
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=78.70 E-value=0.73 Score=48.95 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=52.0
Q ss_pred cceeeecc--ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCC--CCCEEEEE
Q 007773 111 AITVTTVC--GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR--NEAVIHLL 181 (590)
Q Consensus 111 ~I~Vkt~~--Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~--~gsvI~L~ 181 (590)
.++||..+ -+...|..+..-||++||..+....-...=+.+|||+|.|+.|.|...|.|.-++ ...+.||+
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 34455443 3567788888899999999999987422125799999999999999999887542 33455554
No 166
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=78.40 E-value=7.2 Score=33.81 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=45.0
Q ss_pred eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 121 ~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
.+...++-..++..||..+..+.++. .+...++..+..|+.+++|-|-|++-..++.+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~--L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGIS--LSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S----SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCC--cCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 34556777889999999999999988 89999999998999999999999999999998765
No 167
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=78.29 E-value=0.94 Score=50.46 Aligned_cols=41 Identities=29% Similarity=0.465 Sum_probs=33.2
Q ss_pred hhhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEee-cc
Q 007773 412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI-DH 452 (590)
Q Consensus 412 ~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pI-Dh 452 (590)
..++.+..+|.++|.|+|.|+.|+=+-.+.++.++|.|+ |=
T Consensus 327 ~~~~~rr~~fN~LigN~D~H~KN~Sfl~~~~~~~~LAPaYDi 368 (442)
T PRK09775 327 AQRAELLWAFGRLIANTDMHAGNLSFVLSDGRPLALAPVYDM 368 (442)
T ss_pred HHHHHHHHHHhHHhcCCCCCccceEEEECCCCCeeecchhhc
Confidence 346778899999999999999997666554467889988 54
No 168
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=77.15 E-value=9.1 Score=32.85 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=39.7
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~ 81 (590)
.-|.|.+.+ ++.|+|.+..+..+|..+|.++.++|++..+|.|....
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 345664555 99999999999999999999999999888899887543
No 169
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=76.95 E-value=14 Score=31.43 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=55.7
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc--cCCccccccCcccccceeE
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstL~L 102 (590)
...+|.| ..+|+...-+...++++.+|-.-|..+ |.+....+|+ |=-+.+. +.+.+|.+.|+....+|.+
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 4567888 568899999999999999999999875 7777777777 5577774 2457999999988777765
No 170
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=76.72 E-value=3.2 Score=44.68 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=64.9
Q ss_pred EEEEE--Ee-CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccC-CccccccCcccccceeEEeeeccc
Q 007773 34 ILIFL--SV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARS-NSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~V--tl-~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D-~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|.++| .+ ..+.++++|...-....++..++...|++.+..-|+|+++.+..+ ...+..||+..++++.+.-+-++.
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 44555 33 447899999999999999999999999999999999999999866 578999999999999887777665
No 171
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=76.53 E-value=8.7 Score=33.67 Aligned_cols=72 Identities=11% Similarity=0.264 Sum_probs=63.3
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
.-+.+.| ..+|.++.+.|..+.+...|.....+..|-.-+..|+.|+|+.+. -+.|-.+++..++..|.++.
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~-~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRID-LDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecC-CCCChhhcCCccchHHHHHH
Confidence 3466777 578899999999999999999999999999999999999999996 89999999999988776543
No 172
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=76.30 E-value=4.1 Score=34.36 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=44.2
Q ss_pred ecCCCCHHHHHHHHHHhhC-CCccceEEEEcCcccccCCcccccc-CcccccceeEEeee
Q 007773 49 VMESDSIASVKLRIQSYNG-FFVKKQKLVFEGRELARSNSRVRDY-GLADGNVLHLVLRL 106 (590)
Q Consensus 49 V~~sdTV~~LK~kIq~~~G-ip~~~QrLvf~Gk~L~~D~~tL~dy-gI~~gstL~LvlrL 106 (590)
|.++++|.++++-+..... .....-.|.++|+.|. +...|++. |++++.++.++...
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~-~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLD-DFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccC-CchhhhhhhCCCCCcEEEEEecC
Confidence 5789999999999887754 3445567889999996 88888877 57778887776544
No 173
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=76.19 E-value=1.1 Score=44.41 Aligned_cols=43 Identities=35% Similarity=0.475 Sum_probs=36.9
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSF 460 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~ 460 (590)
.+--..++.|++.=.|||.+|||+.+ +|+ ++-||=|++|-...
T Consensus 92 SlA~~s~~~YilglgDRh~~NIli~~--~G~--v~hIDfg~~~~~~~ 134 (202)
T smart00146 92 SCAGYSVITYILGLGDRHNDNIMLDK--TGH--LFHIDFGFILGNGP 134 (202)
T ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeC--CCC--EEEEechhhhCccc
Confidence 45668899999999999999999994 487 89999999997653
No 174
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=75.90 E-value=1.6 Score=45.54 Aligned_cols=42 Identities=29% Similarity=0.555 Sum_probs=35.9
Q ss_pred hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCC
Q 007773 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (590)
Q Consensus 413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp 457 (590)
..+--.+++=|++.=.|||.+|||+... +|+ ++.||-|+||-
T Consensus 171 ~S~A~~Sv~~YilglgDRH~~NIll~~~-tG~--v~HIDfg~~f~ 212 (280)
T cd05169 171 RSLAVMSMVGYILGLGDRHPSNIMIDRL-TGK--VIHIDFGDCFE 212 (280)
T ss_pred HHHHHHHHHHhheeccCCCcceEEEEcC-CCC--EEEEecHHHHh
Confidence 3466678888999999999999999983 477 99999999984
No 175
>PF15051 FAM198: FAM198 protein
Probab=75.67 E-value=7.3 Score=41.20 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=50.3
Q ss_pred CchhhhhhhhhhccCCCCcccccccccCCCCCCceEEEEecccCc--cCCCC-----------------CCCCCCCccce
Q 007773 330 EGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGF--NHPNG-----------------YKHDLENVKIG 390 (590)
Q Consensus 330 ~g~~rEvAAylLD~~~~~~~~~~~~~~gf~~VP~T~lv~~~~~~f--~~~~~-----------------~~~~~~~~k~G 390 (590)
.+-+.||.||=||+ .||++.-=|++-++...+.. .|.+| ..++.....-|
T Consensus 73 p~D~~EVfAFHLDR-----------VLGLNRTLPaVsRkf~~~~l~yr~~dg~~rPvi~Wdp~i~~~~~~dq~s~~L~W~ 141 (326)
T PF15051_consen 73 PLDMSEVFAFHLDR-----------VLGLNRTLPAVSRKFEFQLLPYRYTDGQPRPVIWWDPDIQPDPNNDQNSVALTWG 141 (326)
T ss_pred CCcHHHHHHHHHHH-----------HhcccccchHhHhhhcccccchhhcCCCcceeEEEccccccCCCCCccceecCHH
Confidence 33799999999997 57777776666665433211 12222 11223344445
Q ss_pred EEeecccccC------CcccCCCCCCChhhhhheeeeeeeeecCCC
Q 007773 391 SLQMFVENVG------SCEEMGPRAFPVDEVHKISVLDIRLANTDR 430 (590)
Q Consensus 391 SlQ~fv~~~~------~~~~~~~~~f~~~ev~ki~ilD~~i~N~DR 430 (590)
..|.-+.... +..+.+.....-.|--|||+||+++-=-||
T Consensus 142 ~YQ~lLk~~C~~~g~~Pk~~~~C~~IhH~EW~klALFDFLLQV~dR 187 (326)
T PF15051_consen 142 QYQQLLKQRCWQNGRVPKPEWPCTGIHHHEWSKLALFDFLLQVHDR 187 (326)
T ss_pred HHHHHHHHhcCCCCCcCCCCCCCCccchHHHHHHHHHHHHHHHHhh
Confidence 5555444322 222223333334577799999998754444
No 176
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=75.30 E-value=17 Score=31.35 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=56.9
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCccccc--CCccccccCcccccceeEE
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~--D~~tL~dygI~~gstL~Lv 103 (590)
..-+|.| ..+|+...-+...++++.+|-.-++. .|.+.....|+ |=-+.+.. .+.+|++.|+....+|.+-
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 4457888 67999999999999999999999998 57777878777 45666642 3579999999988887653
No 177
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=73.38 E-value=16 Score=30.28 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=39.7
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (590)
+.|.+..++.+..+.+.++.|..+|+.+|+.+.+.+.....|.|...
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 45666678899999999999999999999999998766677777744
No 178
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=72.80 E-value=2.7 Score=42.93 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=37.2
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSF 460 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~ 460 (590)
.+--.+++=|++.=.|||.+|||+.++ +|+ ++-||=|.||-..-
T Consensus 127 S~A~~S~~~YilglgDRH~~NIli~~~-tG~--v~HIDfg~~f~~~~ 170 (235)
T cd05172 127 SLAAMCVSHWILGIGDRHLSNFLVDLE-TGG--LVGIDFGHAFGTAT 170 (235)
T ss_pred HHHHHHHHhheeeccCCCcccEEEECC-CCc--EEEEeeHhhhccCC
Confidence 456678899999999999999999873 477 99999999997653
No 179
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=72.35 E-value=14 Score=37.95 Aligned_cols=122 Identities=15% Similarity=0.221 Sum_probs=79.9
Q ss_pred CCCEEEEEE-e---CCeE---EEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC------cccccCCccccccCcccc
Q 007773 31 NDSILIFLS-V---GGSV---IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG------RELARSNSRVRDYGLADG 97 (590)
Q Consensus 31 ~~sM~I~Vt-l---~G~t---~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G------k~L~~D~~tL~dygI~~g 97 (590)
.+.+.||++ . +++. -.+-|..+++|.++-..|.+..|+|.+...++|.- ..+. ...++....+++|
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~-~~~t~~~~el~~G 144 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPID-PNQTFEKAELQDG 144 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TT
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcC-CCCchhhcccCCC
Confidence 567889983 2 2222 22358899999999999999999999888888763 2364 7899999999999
Q ss_pred cceeEEeeec--------------------ccccceeee---ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEE
Q 007773 98 NVLHLVLRLS--------------------DLQAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154 (590)
Q Consensus 98 stL~LvlrLs--------------------d~m~I~Vkt---~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~L 154 (590)
+.|-.-...+ ..+.|.++- ..+..|.+.+....|-.+|-++|++..++. |+..+|
T Consensus 145 dIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~d--P~~lr~ 222 (249)
T PF12436_consen 145 DIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVD--PEHLRF 222 (249)
T ss_dssp EEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS---GGGEEE
T ss_pred CEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC--hHHEEE
Confidence 9886655332 123344443 234589999999999999999999999986 888877
Q ss_pred E
Q 007773 155 I 155 (590)
Q Consensus 155 i 155 (590)
+
T Consensus 223 ~ 223 (249)
T PF12436_consen 223 F 223 (249)
T ss_dssp E
T ss_pred E
Confidence 6
No 180
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=70.80 E-value=2.8 Score=47.84 Aligned_cols=40 Identities=33% Similarity=0.546 Sum_probs=33.3
Q ss_pred eeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773 420 VLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 420 ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
||.-=..++|=|.|||||+++..|..+++-.|||++---+
T Consensus 317 If~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is 356 (538)
T KOG1235|consen 317 IFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVIS 356 (538)
T ss_pred HHhcCCccCCCCCCcEEEecCCCCCccEEEEccccccccc
Confidence 6677788999999999999865567789999999976543
No 181
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=69.97 E-value=1.6 Score=53.99 Aligned_cols=42 Identities=36% Similarity=0.592 Sum_probs=35.4
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCC
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSF 460 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~ 460 (590)
..--+|+-|++.=-|||.||||+... |+ ++-||-|+.|-.+.
T Consensus 1644 ~A~Ysv~s~lLq~KDRHNGNim~Dd~--G~--~iHIDFGf~~e~sP 1685 (1803)
T KOG0902|consen 1644 MAGYSVLSYLLQIKDRHNGNIMIDDQ--GH--IIHIDFGFMFESSP 1685 (1803)
T ss_pred HHHHHHHHHHcccccccCCceeEccC--CC--EEEEeeeeEEecCC
Confidence 44567888999999999999999775 77 99999999987543
No 182
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=69.91 E-value=3.7 Score=48.70 Aligned_cols=37 Identities=41% Similarity=0.503 Sum_probs=32.9
Q ss_pred eeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCC
Q 007773 418 ISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (590)
Q Consensus 418 i~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~ 458 (590)
-+|--|+++=.|||.+||||+.+ |+ |.-||-|=.|-+
T Consensus 918 YcVATyVLGIgDRHsDNIMvke~--Gq--lFHIDFGHiLGh 954 (1076)
T KOG0904|consen 918 YCVATYVLGIGDRHSDNIMVKET--GQ--LFHIDFGHILGH 954 (1076)
T ss_pred ceeeeeeecccccccCceEEecc--Cc--EEEEEhhhhhcc
Confidence 46778999999999999999987 88 999999988874
No 183
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=69.28 E-value=2.9 Score=43.68 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=36.9
Q ss_pred hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
..+--.+++=|++.=.|||.+|||+... +|+ ++-||-|.||-..
T Consensus 171 ~S~A~~s~~~yilglgDRh~~NIll~~~-tG~--v~hiDf~~~f~~~ 214 (279)
T cd05171 171 RSVATSSIVGYILGLGDRHANNILIDEK-TAE--VVHIDLGIAFEQG 214 (279)
T ss_pred HHHHHHHHHHHhhccCCCCcccEEEEcC-cCc--EEEEechhhhccC
Confidence 3566678888999999999999999873 477 9999999999644
No 184
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=69.00 E-value=10 Score=43.21 Aligned_cols=93 Identities=23% Similarity=0.207 Sum_probs=57.3
Q ss_pred eeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChHHhHHHHHhcCC
Q 007773 423 IRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGW 502 (590)
Q Consensus 423 ~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~~~l~~~~~ 502 (590)
-=..=+|=|.|||+|..+ |+ ++.+|+|+.=+-.-+...+ =.+.+-.+..-|.+.-++.+.+.|+
T Consensus 284 dgffHaDpHpGNi~v~~~--g~--i~~lDfGi~g~l~~~~r~~------------l~~~~~a~~~rD~~~v~~~~~~~G~ 347 (517)
T COG0661 284 DGFFHADPHPGNILVRSD--GR--IVLLDFGIVGRLDPKFRRY------------LAELLLAFLNRDYDRVAELHVELGY 347 (517)
T ss_pred cCccccCCCccceEEecC--Cc--EEEEcCcceecCCHHHHHH------------HHHHHHHHHhhCHHHHHHHHHHhCC
Confidence 334569999999999987 66 9999999865532221110 0133334445566666677777777
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCHhhH
Q 007773 503 DIPPECARVLRISTMLLKKGVDRGLTPFDI 532 (590)
Q Consensus 503 ~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i 532 (590)
--+..+...+......+-.-. .|.++.++
T Consensus 348 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 376 (517)
T COG0661 348 VPPDTDRDPLAAAIRAVLEPI-YGKPLEEI 376 (517)
T ss_pred CCCccchHHHHHHHHHHHHhh-hCCChhhc
Confidence 766666666666665555433 44444443
No 185
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=68.57 E-value=14 Score=37.16 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=51.6
Q ss_pred eEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE-ECC-----EEc-CCCCcccccCCCCCCEEEEEeecCCCc
Q 007773 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDG-----EEL-EDQRLITDICKRNEAVIHLLVRKSAKV 188 (590)
Q Consensus 122 ~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li-f~G-----k~L-eD~~tL~dy~I~~gsvI~L~vrks~kv 188 (590)
+.....++.||.++|.|+....|.+ ++..+|. |+| -.| .+...|..|...+|..||++-..+..+
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~ 86 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSI 86 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccc
Confidence 3345678899999999999999988 8888876 555 235 457789999999999999987655555
No 186
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=67.91 E-value=3 Score=42.62 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=36.6
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
.+--.+++=|++.=.|||.+|||+.+. +|+ ++-||=|.||-..
T Consensus 130 SlA~~s~~~YilgigDRh~~NIli~~~-tG~--~~HIDfg~~~~~~ 172 (237)
T cd00892 130 STAVMSMVGYILGLGDRHGENILFDSN-TGD--VVHVDFNCLFDKG 172 (237)
T ss_pred HHHHHHHHHHHhccCCCCcccEEEEcC-CCc--EEEEehHhhhccc
Confidence 355677889999999999999999983 377 9999999999864
No 187
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=67.10 E-value=27 Score=28.71 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=44.5
Q ss_pred EEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 36 IFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 36 I~Vtl~G~--t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
+.|+++|+ ...+++....||.++-..+ +++...-.+..+|..+. . ++-+++|+.|.++...+|
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-~-----~~~l~~gD~Veii~~V~G 69 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-E-----DDPVKDGDYVEVIPVVSG 69 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-C-----CcCcCCCCEEEEEccccC
Confidence 44455655 5677788888999888765 66665556668888875 2 556778998887765554
No 188
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=67.01 E-value=29 Score=29.94 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=52.6
Q ss_pred cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc---CCCCcccccCCCCCCEEEEE
Q 007773 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~L---eD~~tL~dy~I~~gsvI~L~ 181 (590)
+|.||..+|+.+.-....++++.+|-.-+.. .|.+ ++...|+ |=-+.+ +-+.+|.+.|+...++|.+-
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 5677778888888778888999999998887 4544 6777777 555555 33579999999999998863
No 189
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=64.20 E-value=26 Score=29.05 Aligned_cols=48 Identities=13% Similarity=0.294 Sum_probs=40.5
Q ss_pred CEEEEEEeCCeEEE-EEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc
Q 007773 33 SILIFLSVGGSVIP-MRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (590)
Q Consensus 33 sM~I~Vtl~G~t~~-l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (590)
++.|.+...+.... +.+..+.|..+|+.+|+.+.+.+.....|.|.+.
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~ 49 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDE 49 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEET
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCC
Confidence 46777788888777 9999999999999999999999877778888643
No 190
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=64.17 E-value=26 Score=28.14 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=43.8
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 37 FLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 37 ~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
.|+++|+.+.+ + ..|+.+|...+ +++.+...+..+++.+. ...-.+.-+++|+.|.++....|
T Consensus 2 ~i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~--~~~~~~~~L~dgD~Ieiv~~V~G 64 (65)
T PRK06488 2 KLFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH--KEARAQFVLHEGDRIEILSPMQG 64 (65)
T ss_pred EEEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC--HHHcCccccCCCCEEEEEEeccC
Confidence 34667877776 3 35888887654 56655555678898886 34556778889999988765544
No 191
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=62.93 E-value=42 Score=27.56 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=43.4
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccc-eEEEE----cCcc--cccCCccccccCcc
Q 007773 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVF----EGRE--LARSNSRVRDYGLA 95 (590)
Q Consensus 39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf----~Gk~--L~~D~~tL~dygI~ 95 (590)
.++|.+.+++|+++.|+.++=.+|..+.|+.... .-|.+ .|.. |. .+.+|.++...
T Consensus 3 llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~-~~k~l~~q~~~ 65 (80)
T PF09379_consen 3 LLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLD-LDKKLKKQLKK 65 (80)
T ss_dssp ESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE--SSSBGGGSTBT
T ss_pred CcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceecc-CcccHHHHcCC
Confidence 5788999999999999999999999999986333 35777 1211 54 77888888776
No 192
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=61.53 E-value=11 Score=40.74 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=60.8
Q ss_pred cceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCC--CCcccccCCCCCCEEEEEeecCCCccCCC
Q 007773 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELED--QRLITDICKRNEAVIHLLVRKSAKVRAKP 192 (590)
Q Consensus 118 ~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD--~~tL~dy~I~~gsvI~L~vrks~kv~~~p 192 (590)
..+.+.+.|...-....++..++...+++ .+..-|+|+++.+.. ...+..|++..++++.+.-+.++..+..|
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~r~~v~ 85 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDPRPIVP 85 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcc--cchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCCCcccc
Confidence 56788999999999999999999999988 788889999999965 57789999999999887666666544433
No 193
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=61.45 E-value=17 Score=42.51 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=41.7
Q ss_pred EEEEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc
Q 007773 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81 (590)
Q Consensus 34 M~I~V--tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~ 81 (590)
+.|+| ..++..+.+-++++.|+..++.+|...+|+|...|.|+|.|..
T Consensus 314 ~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 314 KVVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred heeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 45555 4566789999999999999999999999999999999998664
No 194
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=60.59 E-value=12 Score=42.83 Aligned_cols=79 Identities=23% Similarity=0.408 Sum_probs=48.6
Q ss_pred CCCEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHh--hCCCccce------EEEE-c---Cc-ccccCC--------
Q 007773 31 NDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVKKQ------KLVF-E---GR-ELARSN-------- 86 (590)
Q Consensus 31 ~~sM~I~Vtl---~G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~~~Q------rLvf-~---Gk-~L~~D~-------- 86 (590)
-.++.++|.. ....+.+.|...|||.++|+||-.. .+.|..+. -|.+ . |+ .|.+.+
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 4678888732 2356999999999999999999877 45554432 3432 1 22 233211
Q ss_pred ----ccccccCcccccceeEEeeeccc
Q 007773 87 ----SRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 87 ----~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.||+.|+|.+|+++-|+.+..+.
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k~~~~ 293 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPKQHSS 293 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES----
T ss_pred ceEeccHhhcCCCCCceEEEeeccccc
Confidence 37899999999999988876533
No 195
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=59.81 E-value=29 Score=28.49 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=44.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhCC----CccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 43 SVIPMRVMESDSIASVKLRIQSYNGF----FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 43 ~t~~l~V~~sdTV~~LK~kIq~~~Gi----p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
....+++....||.+|...+....+- ......+..+|+... .++-+++|+.|.++...+|+
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~------~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR------LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC------CCcccCCCCEEEEeCCCCCC
Confidence 35677777789999999999887542 223445667888775 34668899999988776654
No 196
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=59.79 E-value=7.5 Score=47.65 Aligned_cols=37 Identities=35% Similarity=0.486 Sum_probs=33.1
Q ss_pred eeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCC
Q 007773 418 ISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (590)
Q Consensus 418 i~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~ 458 (590)
-+|--|+++=+|||.+|||.++. |+ +.-||-|=-+-+
T Consensus 1191 ~cVaTYVLGIcDRHNDNIMl~~s--GH--mFHIDFGKFLGh 1227 (1639)
T KOG0905|consen 1191 WCVATYVLGICDRHNDNIMLTKS--GH--MFHIDFGKFLGH 1227 (1639)
T ss_pred ceeeeEeeecccccCCceEEecc--Cc--EEEEehhhhcch
Confidence 57889999999999999999997 77 999999987764
No 197
>PRK06437 hypothetical protein; Provisional
Probab=59.23 E-value=40 Score=27.55 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=44.6
Q ss_pred EEeCC-eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 38 LSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 38 Vtl~G-~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
++.+| +...+++....||.+|-.. .|++++.-.+..+|+.+. .++-+++|+.|.++.-.+|
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~------~~~~L~dgD~Veiv~~V~G 66 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL------EDHNVKKEDDVLILEVFSG 66 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC------CceEcCCCCEEEEEecccC
Confidence 34445 5677888888899887755 478877777778999886 4566779999887765544
No 198
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=58.74 E-value=5.5 Score=40.23 Aligned_cols=43 Identities=30% Similarity=0.501 Sum_probs=36.5
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
.+--.+++=|++.=.|||.+|||+... +|+ ++-||=|.+|-..
T Consensus 122 SlA~~s~~~YvlglgDRh~~NIli~~~-tG~--v~hIDf~~~~~~~ 164 (222)
T cd05164 122 STAVMSIVGYILGLGDRHLDNILIDRE-TGE--VVHIDFGCIFEKG 164 (222)
T ss_pred HHHHHHHHHHHhccCCCCCceEEEECC-CCc--EEEEccHHhhccC
Confidence 455677889999999999999999983 477 8999999999755
No 199
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=58.08 E-value=6.1 Score=41.94 Aligned_cols=43 Identities=26% Similarity=0.453 Sum_probs=36.5
Q ss_pred hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCC
Q 007773 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (590)
Q Consensus 413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~ 458 (590)
..+--++++=|++.=.|||.+|||+.+. +|+ ++-||=|.||-.
T Consensus 199 ~s~A~~s~~~yilglgDRh~~NIli~~~-tG~--v~hiDf~~~f~~ 241 (307)
T cd05170 199 RSTAVMSMIGYVIGLGDRHLDNVLIDLK-TGE--VVHIDYNVCFEK 241 (307)
T ss_pred HHHHHHHHHHHHccCCCCCCccEEEEcC-CCc--EEEEeeHhhhcc
Confidence 3566778889999999999999999973 477 999999999964
No 200
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=57.28 E-value=28 Score=29.91 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=34.6
Q ss_pred eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEE
Q 007773 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160 (590)
Q Consensus 121 ~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~ 160 (590)
++.|.|.+.-+..+|.++|.++.+++ +++..|.|+.+.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~--~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELP--AEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC--chhcEEEeccCC
Confidence 78899999999999999999999998 889999997654
No 201
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=57.01 E-value=50 Score=28.09 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=50.7
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC---CCCcccccCCCCCCEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVIHL 180 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~Le---D~~tL~dy~I~~gsvI~L 180 (590)
.+|.||..+|..+.-....++++++|-.-|... |.+ ++..+|+ |=-+++. .+.+|.+.|+...++|.+
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 345666667777777777899999999999775 444 5677776 5666663 357999999988888875
No 202
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=56.21 E-value=59 Score=31.23 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=45.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC------EEcCCCCcccccC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG------EELEDQRLITDIC 171 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G------k~LeD~~tL~dy~ 171 (590)
+.|.|...+|....+.++.+.||.++-+.++.+.|+. ....-.|.+-. ..|+..+++.+..
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~-~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~ 70 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR-ESEYFGLQFEDPDEDLSHWLDPAKTLLDQD 70 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC-ccceeEEEEEcCCCCcCeeCCCccCHHHhc
Confidence 4566777889999999999999999999999999986 24555666522 2355555555544
No 203
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=55.22 E-value=48 Score=29.01 Aligned_cols=46 Identities=7% Similarity=0.183 Sum_probs=36.0
Q ss_pred EEEEEeCCeEEEEEecC-----CCCHHHHHHHHHHhhCCCc-cceEEEEcCc
Q 007773 35 LIFLSVGGSVIPMRVME-----SDSIASVKLRIQSYNGFFV-KKQKLVFEGR 80 (590)
Q Consensus 35 ~I~Vtl~G~t~~l~V~~-----sdTV~~LK~kIq~~~Gip~-~~QrLvf~Gk 80 (590)
.|.|+.+|.+..+.+.. +.+...|+.+|++...++. ..-.|.|...
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~De 53 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDE 53 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 46668888888888874 7999999999999999987 4445566543
No 204
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=54.98 E-value=62 Score=28.19 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=38.6
Q ss_pred CEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc
Q 007773 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (590)
Q Consensus 33 sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (590)
.|+|.|...|.++.+.|.++.+..+|..+|..++++. ...++.|-..
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 4677888889999999999999999999999999985 3445555444
No 205
>smart00455 RBD Raf-like Ras-binding domain.
Probab=54.67 E-value=28 Score=28.90 Aligned_cols=43 Identities=16% Similarity=-0.010 Sum_probs=37.9
Q ss_pred eeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC
Q 007773 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (590)
Q Consensus 114 Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G 158 (590)
|-..+|+...+.+.++.|+.++-+++.++.|+. ++...|+..|
T Consensus 4 v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~--~~~~~v~~~g 46 (70)
T smart00455 4 VHLPDNQRTVVKVRPGKTVRDALAKALKKRGLN--PECCVVRLRG 46 (70)
T ss_pred EECCCCCEEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEcC
Confidence 445688899999999999999999999999987 8888888855
No 206
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=53.26 E-value=28 Score=29.19 Aligned_cols=44 Identities=20% Similarity=0.062 Sum_probs=38.0
Q ss_pred eeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC
Q 007773 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (590)
Q Consensus 113 ~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G 158 (590)
.|-..+|+...+.|.++.||.++-.++.++.|+. ++...|+..|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~--~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLN--PECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEec
Confidence 4556788999999999999999999999999988 8888877654
No 207
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=52.90 E-value=38 Score=28.39 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=38.8
Q ss_pred EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc
Q 007773 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (590)
Q Consensus 36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (590)
+.| ..+|+...+.|.|+.||.++-.++-++.|+.+..-.+++.|.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 455 568899999999999999999999999999988888876643
No 208
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=52.29 E-value=92 Score=29.87 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=34.6
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCc
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV 70 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~ 70 (590)
..+.|.| .++|.+..+.++++.|+.+|...+..+.|++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 3567888 77899999999999999999999999999953
No 209
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=51.47 E-value=49 Score=27.19 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=36.7
Q ss_pred EEEEEeCCeEEEEEec-CCCCHHHHHHHHHHhhCCCccceEEEEcCc
Q 007773 35 LIFLSVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (590)
Q Consensus 35 ~I~Vtl~G~t~~l~V~-~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (590)
.|.+..+|....+.+. .+.|..+|+.+|.++.+++.....+.|-+.
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~ 48 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDE 48 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCC
Confidence 4566677888889888 899999999999999998764556666543
No 210
>smart00455 RBD Raf-like Ras-binding domain.
Probab=51.22 E-value=42 Score=27.81 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=37.9
Q ss_pred EE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC
Q 007773 37 FL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (590)
Q Consensus 37 ~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (590)
.| ..+|+...+.+.|+.||.++-.++-++.|+.++.-.+++.|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 44 45789999999999999999999999999998888888755
No 211
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=50.81 E-value=34 Score=29.80 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=31.8
Q ss_pred ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCC
Q 007773 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (590)
Q Consensus 112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~ 146 (590)
..+++..|+.+.+.+.++..+.+|++.|+++.|+.
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d 37 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDD 37 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCc
Confidence 45677899999999999999999999999999976
No 212
>PRK06437 hypothetical protein; Provisional
Probab=49.73 E-value=86 Score=25.59 Aligned_cols=54 Identities=11% Similarity=0.026 Sum_probs=40.5
Q ss_pred cceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 118 ~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
.++...++++...||.+|-+. .+++ ++...+..+|+.+. .++-+++|+.|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~--~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLD--EEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCC--CccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 446677788888898886543 4666 77888889999998 555677888888763
No 213
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=49.25 E-value=90 Score=26.90 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=49.9
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
...+.+.|+.+|+.+.+ ....||.+|-.. .+++...--+..+|..+. ...-..+-+++|+.|.++--..|
T Consensus 14 ~~~~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp--r~~w~~t~L~egD~IEIv~~VgG 83 (84)
T PRK06083 14 AAMVLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP--RSEWQSTVLSSGDAISLFQAIAG 83 (84)
T ss_pred CCCceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC--HHHcCcccCCCCCEEEEEEEecC
Confidence 34456667778887666 556777776654 477776667789999996 45677778999999987654443
No 214
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=49.19 E-value=66 Score=26.32 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=40.1
Q ss_pred eeEEEeecCCcHHHHHHHHHHhcCC--CCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 121 VFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 121 ~~~i~Vd~s~TV~~LK~kI~~~~gi--~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
...++++...||.+|.+.+...+.. ........+..+|+... .+.-+++|+.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEe
Confidence 3567777789999999999887642 00034556778998887 35567888998875
No 215
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=48.89 E-value=65 Score=27.58 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=35.8
Q ss_pred eeee-ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEE
Q 007773 113 TVTT-VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160 (590)
Q Consensus 113 ~Vkt-~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~ 160 (590)
.||. ..|..+.+.+.++.+..+|+++|++++++. +.....|-|-..+
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~-~~~~f~LkY~Dde 49 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLD-DMSAFDLKYLDDD 49 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCC-CCCeeEEEEECCC
Confidence 3443 467788899999999999999999999965 1256677775544
No 216
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=48.53 E-value=62 Score=26.14 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=44.5
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 37 FLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 37 ~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
.|+++|+.+.+ .+..|+.++-.. .+++...-.+.+++..+.++.. ..+ +++|+.|.++-...|
T Consensus 2 ~i~vNG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~--~~~-L~~gD~ieIv~~VgG 64 (65)
T PRK05863 2 IVVVNEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW--ATK-LRDGARLEVVTAVQG 64 (65)
T ss_pred EEEECCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh--hhh-cCCCCEEEEEeeccC
Confidence 34667777666 356777766554 5788888888899999875443 346 999999987755443
No 217
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=47.52 E-value=4.9 Score=41.08 Aligned_cols=63 Identities=24% Similarity=0.443 Sum_probs=37.4
Q ss_pred EEeeccCCcCCCCCCC--Ccc------cccccC-cCCCCCCHHHHHHHHccChHHhHHHHHhcCCCCCHH-HHHHHHHHH
Q 007773 447 LVPIDHGYCLPYSFED--CTF------DWLYWP-QARQPYSPETINYINALDAEKDIELLKFHGWDIPPE-CARVLRIST 516 (590)
Q Consensus 447 l~pIDhGl~fp~~~~~--~~f------~W~~wp-qa~~Pfs~~~~~~i~~Ld~~~d~~~l~~~~~~~~~~-~~~~l~~~t 516 (590)
-++|.||+.+|+.|+. ++| +|..=. .++.||++..+..+..|. . .|+++++ ..+.+|...
T Consensus 107 ~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~---------~-~~dmpd~vrAKl~K~~G 176 (230)
T PHA02537 107 EYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLT---------T-EWDMPDEVRAKLYKAAG 176 (230)
T ss_pred HHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH---------h-cCCCChHHHHHHHHHHH
Confidence 5789999999999874 232 454322 238888887665544332 2 3666544 344444444
Q ss_pred HHH
Q 007773 517 MLL 519 (590)
Q Consensus 517 ~~L 519 (590)
..|
T Consensus 177 ~~l 179 (230)
T PHA02537 177 YLL 179 (230)
T ss_pred HHH
Confidence 444
No 218
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=47.35 E-value=69 Score=27.61 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=34.6
Q ss_pred EEEEEeCCeEEEEEecC--CCCHHHHHHHHHHhhCCCccceEEEE
Q 007773 35 LIFLSVGGSVIPMRVME--SDSIASVKLRIQSYNGFFVKKQKLVF 77 (590)
Q Consensus 35 ~I~Vtl~G~t~~l~V~~--sdTV~~LK~kIq~~~Gip~~~QrLvf 77 (590)
.|.++.+|.+..+.+++ +-|..+|+..|+...+++ ...|-|
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 56678999999999999 669999999999999998 344444
No 219
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=46.38 E-value=69 Score=26.51 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=49.7
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcC-CCCCCCcEEEE-ECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELI-CDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~g-i~~~~~~Q~Li-f~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
.+|+...++...+....-+.++--+..+ .--|++.-.|- -+|..|+-.+.+.||++.++-++.|.++-
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 3577777777777777777666555443 32236665555 47888999999999999999999987763
No 220
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=46.31 E-value=6.6 Score=41.62 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCCEEEEE-EeCCeEEEEEe--c-C--CCCHHHHHHHHHH----------hhCCCccceE-----EEEcCcccccCCcc
Q 007773 30 SNDSILIFL-SVGGSVIPMRV--M-E--SDSIASVKLRIQS----------YNGFFVKKQK-----LVFEGRELARSNSR 88 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V--~-~--sdTV~~LK~kIq~----------~~Gip~~~Qr-----Lvf~Gk~L~~D~~t 88 (590)
+..+|.|++ .+....+.|.+ . | +.||.++|..+++ +.++|.++.+ |.|+-+.+. |..+
T Consensus 75 s~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~-~~kt 153 (309)
T PF12754_consen 75 SSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVG-DSKT 153 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCC-CcCc
Confidence 356677777 44434433332 2 3 6899999999999 8999999999 999999996 8889
Q ss_pred ccccCcc
Q 007773 89 VRDYGLA 95 (590)
Q Consensus 89 L~dygI~ 95 (590)
|.+..-.
T Consensus 154 l~e~l~~ 160 (309)
T PF12754_consen 154 LAEVLAD 160 (309)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 9887644
No 221
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=46.06 E-value=50 Score=28.73 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=33.3
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCcc---ceEEEE
Q 007773 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKLVF 77 (590)
Q Consensus 39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~---~QrLvf 77 (590)
+..|+++.+.+.|+.++.+|++.|.++.|+... .-.|.|
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 568999999999999999999999999999863 445555
No 222
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=45.63 E-value=16 Score=42.69 Aligned_cols=38 Identities=39% Similarity=0.824 Sum_probs=30.2
Q ss_pred hhhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCC
Q 007773 412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (590)
Q Consensus 412 ~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~ 458 (590)
++.||||+..- -|=+.+||||..| |+++| -|-|||---
T Consensus 742 iesVHkmGFIH-----RDiKPDNILIDrd--GHIKL--TDFGLCTGf 779 (1034)
T KOG0608|consen 742 IESVHKMGFIH-----RDIKPDNILIDRD--GHIKL--TDFGLCTGF 779 (1034)
T ss_pred HHHHHhcccee-----cccCccceEEccC--Cceee--eeccccccc
Confidence 45699999763 4669999999887 99776 589999653
No 223
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=45.40 E-value=97 Score=24.69 Aligned_cols=63 Identities=19% Similarity=0.363 Sum_probs=44.0
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 38 Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
|+.+|+.+. +....||.++-.. .+++...-.+..+|..+. ...-.+.-+++|+.|.++-...|
T Consensus 3 i~vNG~~~~--~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~--r~~~~~~~l~~gD~vei~~~vgG 65 (66)
T PRK05659 3 IQLNGEPRE--LPDGESVAALLAR----EGLAGRRVAVEVNGEIVP--RSQHASTALREGDVVEIVHALGG 65 (66)
T ss_pred EEECCeEEE--cCCCCCHHHHHHh----cCCCCCeEEEEECCeEeC--HHHcCcccCCCCCEEEEEEEecC
Confidence 456777654 4567788877654 578877777889998886 33455667889999887655443
No 224
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=45.38 E-value=72 Score=25.69 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=37.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
|+|+|+ |+ .++++.+.|...||+++.. +.-.++|+|-...+ |+-+++++.|.+.
T Consensus 1 M~I~vN---~k--~~~~~~~~tl~~lr~~~k~--------~~DI~I~NGF~~~~-----d~~L~e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKVN---EK--EIETEENTTLFELRKESKP--------DADIVILNGFPTKE-----DIELKEGDEVFLI 54 (57)
T ss_pred CEEEEC---CE--EEEcCCCcCHHHHHHhhCC--------CCCEEEEcCcccCC-----ccccCCCCEEEEE
Confidence 455543 44 4566688899999987653 22367999999884 5566677777763
No 225
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=45.30 E-value=55 Score=38.55 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=49.0
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC--CCCCEEEEEeecCCCcc
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK--RNEAVIHLLVRKSAKVR 189 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I--~~gsvI~L~vrks~kv~ 189 (590)
.++..+.+.++++.|+..++.+|.+.+|++ .+.|.|+|.|...-... +.-++ .-++.|.++...+.++-
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgip--e~~qeLL~e~~~~h~~~--~~Q~~~dg~~~~l~l~~~~~~~v~ 392 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIP--EGKQELLFEGGLSHLED--SAQCIPDGLDSPLYLVSDQDKNVD 392 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCC--CccceeeeecCccccCc--ccccCCCCCCCceEEEecCCCcch
Confidence 456778899999999999999999999998 99999999876532222 11111 14466666666555443
No 226
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=44.35 E-value=64 Score=26.62 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=33.5
Q ss_pred cceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCE
Q 007773 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (590)
Q Consensus 118 ~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk 159 (590)
.+....+.+.+..|-.+|+.+|+++++.. .....|-|.+.
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~--~~~~~l~Y~De 48 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLD--NQSFTLKYQDE 48 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCC--CCCeEEEEECC
Confidence 56788899999999999999999999976 56777888643
No 227
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=43.40 E-value=71 Score=26.45 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=49.4
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhh---CCCccceEEE-EcCcccccCCccccccCcccccceeEEee
Q 007773 40 VGGSVIPMRVMESDSIASVKLRIQSYN---GFFVKKQKLV-FEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 40 l~G~t~~l~V~~sdTV~~LK~kIq~~~---Gip~~~QrLv-f~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
.+|+...++..+....-.+..+--+.. |-|++.=.|. -+|..|. -++.+.|||+.++.++.|.++
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD-~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLD-VNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEee-ccchhhhccccccceEEEEee
Confidence 467778888888888777777665554 4566665665 3678785 789999999999998888765
No 228
>PRK07440 hypothetical protein; Provisional
Probab=42.48 E-value=1.3e+02 Score=24.75 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=45.7
Q ss_pred EEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 36 I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
+.|+.+|+.+. +....||.+|-. ..++++..--+..+|..+. ...-.++-+++|+.|.++--..|
T Consensus 5 m~i~vNG~~~~--~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~--r~~w~~~~L~~gD~IEIv~~v~G 69 (70)
T PRK07440 5 ITLQVNGETRT--CSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILH--RQFWEQTQVQPGDRLEIVTIVGG 69 (70)
T ss_pred eEEEECCEEEE--cCCCCCHHHHHH----HcCCCCCeEEEEECCEEeC--HHHcCceecCCCCEEEEEEEecC
Confidence 44556777644 456778887764 4567777677789999987 35566777899999987654443
No 229
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=42.38 E-value=39 Score=36.99 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=51.3
Q ss_pred CEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCC-CccceEEE--EcCcccccCCccccccCcccccce
Q 007773 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGF-FVKKQKLV--FEGRELARSNSRVRDYGLADGNVL 100 (590)
Q Consensus 33 sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gi-p~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstL 100 (590)
+|||.+ .+|..+...++.+.||.+|+.-|.....- +...+.|+ |=-++|.+++.||++.|+.+-..+
T Consensus 307 sIQIRL-anG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 307 SIQIRL-ANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred eEEEEe-cCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 344444 47788888999999999999999988654 33356665 558889988999999999866544
No 230
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=41.35 E-value=1.2e+02 Score=27.26 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=46.1
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHh----cCCCCCCC-cEEEEECCEE--cCCCCccccc-----CCCCCCEEEEEeecC
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKK----GREFVDLK-NQELICDGEE--LEDQRLITDI-----CKRNEAVIHLLVRKS 185 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~----~gi~~~~~-~Q~Lif~Gk~--LeD~~tL~dy-----~I~~gsvI~L~vrks 185 (590)
...+++.++.++++.+|.+.+-.+ .+...+++ +..|--.|+. |.....|.+| |++.+..++|++...
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~~ 106 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMTL 106 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEec
Confidence 456889999999999998877665 22222233 5666666654 5566666666 467889999887643
No 231
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=40.42 E-value=1.4e+02 Score=24.51 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=36.9
Q ss_pred eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 121 ~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
...++++...||.++-+.+ +++ ++...+..+|+.... +.-+++|+.|.++
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~--~~~v~v~vNg~iv~~-----~~~l~~gD~Veii 64 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFN--TESAIAKVNGKVALE-----DDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCC--CccEEEEECCEECCC-----CcCcCCCCEEEEE
Confidence 5667778888999887655 554 566677889999863 5557788888875
No 232
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=39.46 E-value=18 Score=37.40 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=35.5
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCC
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~ 458 (590)
.+--++++=|++.=.|||.+|||+... .|+ ++.||-|.+|-.
T Consensus 145 s~A~~s~~gYilglgdRh~~nili~~~-tG~--v~hiDf~~~f~~ 186 (253)
T cd05163 145 QLALLSFMTYILSINNRNPDKIFISRD-TGN--VYQSDLLPSINN 186 (253)
T ss_pred HHHHHHHHHHHhcCCCCCchhEEEEcC-CCc--EEEEeeeeeecC
Confidence 455678889999999999999999984 577 999999988854
No 233
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=39.32 E-value=2.2e+02 Score=27.39 Aligned_cols=111 Identities=18% Similarity=0.336 Sum_probs=71.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccce----eEEeeeccc-ccceeeecc
Q 007773 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL----HLVLRLSDL-QAITVTTVC 118 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL----~LvlrLsd~-m~I~Vkt~~ 118 (590)
.++-+...-+|.+.|-.+|....|+ .|++.+|..|. .---||...|.-+ .-.+...|. +.+.|++
T Consensus 5 IfP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LP----k~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v-- 74 (153)
T PF02505_consen 5 IFPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLP----KTVPYGPARGTPVNHPDRKVINVGGEEVELTVKV-- 74 (153)
T ss_pred EechhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCC----CCCCCCCCCCCcCCCCcceEEEECCEEEEEEEEE--
Confidence 3445566778999999999988777 58999999998 2235787766532 233333332 4455554
Q ss_pred ceeeEEEeec-CCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccC
Q 007773 119 GKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171 (590)
Q Consensus 119 Gk~~~i~Vd~-s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~ 171 (590)
| .+-++++. .+.+..+++.-.+.+-. ... +..|+-+....|++||.
T Consensus 75 G-ri~lele~~~~~ie~I~~iCee~lpf-----~y~-i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 75 G-RIILELEDEEDVIEKIREICEEVLPF-----GYD-IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred e-EEEEEecCcHHHHHHHHHHHHHhCCC-----ceE-eeeeEEeccCCchhhhh
Confidence 4 36677777 56666666533333321 122 34699999999999996
No 234
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=39.07 E-value=98 Score=25.81 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=40.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhC-CCc--cceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 43 SVIPMRVMESDSIASVKLRIQSYNG-FFV--KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 43 ~t~~l~V~~sdTV~~LK~kIq~~~G-ip~--~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
....+++....|+.+|+..+..... +.. ..-.+..+|+... .++-+++|+.|.+....+|+
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~------~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT------ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC------CCcCcCCCCEEEEeCCCCCC
Confidence 5677788889999999999976641 111 1113446666653 34567789999887766653
No 235
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=38.90 E-value=63 Score=37.16 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=42.5
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE--C--CE-EcCCC-------------CcccccCCCC
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC--D--GE-ELEDQ-------------RLITDICKRN 174 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif--~--Gk-~LeD~-------------~tL~dy~I~~ 174 (590)
...+.+.|=.+|||.++|+||-... +.|. .+++.-|.+ + |+ .|.|. +||..|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3457888889999999999997763 2221 235555543 1 23 34432 5789999999
Q ss_pred CCEEEEEeecC
Q 007773 175 EAVIHLLVRKS 185 (590)
Q Consensus 175 gsvI~L~vrks 185 (590)
|+++-|+.++.
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999977654
No 236
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=38.57 E-value=1.4e+02 Score=25.11 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=42.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhCC-----C------ccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 43 SVIPMRVMESDSIASVKLRIQSYNGF-----F------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 43 ~t~~l~V~~sdTV~~LK~kIq~~~Gi-----p------~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
....+++. ..||.++...+.++..- - .....+..+|+... .+.. +-+++|+.|.+...++|+
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~-~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVD-WGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecC-ccCC---CCCCCCCEEEEeCCCcCC
Confidence 45677775 88999999999877531 0 11244556787765 3321 568899999988877764
No 237
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=38.38 E-value=1.1e+02 Score=25.29 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=42.5
Q ss_pred eEEEEEecCC-CCHHHHHHHHHHhhC-CC--ccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 43 SVIPMRVMES-DSIASVKLRIQSYNG-FF--VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 43 ~t~~l~V~~s-dTV~~LK~kIq~~~G-ip--~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
....+++... .||.+|+..+..... +. .....+..+|+... + +.-+++|+.|.+....+|+
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~-~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT-D-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcC-C-----CcCcCCCCEEEEeCCCCCC
Confidence 3457788766 899999999988864 11 12234556777664 3 4677899999888777654
No 238
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=38.35 E-value=1.9e+02 Score=25.84 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=48.9
Q ss_pred CCCEEEEEEeC--CeEEEEEecCCCCHHHHHHHHHHh----hCC--Ccc-ceEEEEcCcc--cccCCccccccC-----c
Q 007773 31 NDSILIFLSVG--GSVIPMRVMESDSIASVKLRIQSY----NGF--FVK-KQKLVFEGRE--LARSNSRVRDYG-----L 94 (590)
Q Consensus 31 ~~sM~I~Vtl~--G~t~~l~V~~sdTV~~LK~kIq~~----~Gi--p~~-~QrLvf~Gk~--L~~D~~tL~dyg-----I 94 (590)
.+.+.|.|... ...+++.+++++|+.+|...+-.+ .+. +.. +-.|.-.|+. |. .+..|.+|. +
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~-~~~~L~~~~yIr~cl 93 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLL-GDHPLGSFEYIRNCL 93 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEe-CCeeeechHHHHHHH
Confidence 45666777433 468999999999999999877766 111 122 3345566664 55 566666664 4
Q ss_pred ccccceeEEeee
Q 007773 95 ADGNVLHLVLRL 106 (590)
Q Consensus 95 ~~gstL~LvlrL 106 (590)
+.+..++|++..
T Consensus 94 ~~~~~~~L~L~~ 105 (108)
T smart00144 94 KNGREPHLVLMT 105 (108)
T ss_pred hcCCCceEEEEe
Confidence 557777777643
No 239
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=38.17 E-value=80 Score=25.28 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=43.6
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
+.+|+.+.+ ....||.+|..++ +++.+.-.+..+|+.+.+ ..-.++-+++|+.|.++....|+
T Consensus 3 ~iNg~~~~~--~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~--~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 3 TVNGEPREV--EEGATLAELLEEL----GLDPRGVAVALNGEIVPR--SEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EECCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH--HHcCceecCCCCEEEEEEeccCC
Confidence 456666655 5677898888765 466666677789998863 33344668899999887665543
No 240
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=37.72 E-value=2.3e+02 Score=24.83 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=41.8
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE----CCE-EcCC-CCcccccCCCCCCEEEEEeec
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DGE-ELED-QRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif----~Gk-~LeD-~~tL~dy~I~~gsvI~L~vrk 184 (590)
..++....+.+||+.++..+.+.+.+. ++.||-- ++. .|.+ +.|+.|.++.+|-+|.+-.|.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i~---~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNIQ---EETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT-T---S-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCCC---ccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 356667789999999999999999984 5677763 333 3544 578999999999998876664
No 241
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=37.43 E-value=17 Score=39.20 Aligned_cols=58 Identities=33% Similarity=0.311 Sum_probs=48.3
Q ss_pred CCCEEEEE--EeCCeEEEEEec-CCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccc
Q 007773 31 NDSILIFL--SVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89 (590)
Q Consensus 31 ~~sM~I~V--tl~G~t~~l~V~-~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL 89 (590)
..++++.. ..+|.++.+.+. .++.+..+|.++....++++..|++.+.|..|. |+..+
T Consensus 279 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~-d~~~~ 339 (341)
T KOG0007|consen 279 PVSIQVSRPVPADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLK-DNRSL 339 (341)
T ss_pred CcceecccccCCCCceeeeccccccccccccccccccccccchhheeeccCCcccC-ccccc
Confidence 34455544 578889888888 799999999999999999999999999999998 55444
No 242
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=36.81 E-value=90 Score=25.15 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=37.6
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
|+|+| +|+ .+++..+.|...||.++.... -.++++|-+.. ++ +-+++|+.|.+.-
T Consensus 1 M~I~v--N~k--~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~-~d-----~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKV--NEK--EIETEENTTLFELRKESKPDA------DIVILNGFPTK-ED-----IELKEGDEVFLIK 55 (57)
T ss_pred CEEEE--CCE--EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccC-Cc-----cccCCCCEEEEEe
Confidence 45554 433 355678889999998876432 26799999997 44 4556788776653
No 243
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=36.27 E-value=1.3e+02 Score=33.38 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=52.6
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE----CCEE--cCCCCcccccCCCCCCEEEEEe
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DGEE--LEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif----~Gk~--LeD~~tL~dy~I~~gsvI~L~v 182 (590)
|.+.+|...| +..++++.+++.+.|-.+|-.-+....++++..++- .|.. +..++++.|.|++.|..+.|..
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 3455665555 467899999999999988877765443466666654 2332 4557899999999999999987
No 244
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=34.11 E-value=16 Score=39.29 Aligned_cols=62 Identities=11% Similarity=0.196 Sum_probs=44.5
Q ss_pred CCEEEEE-EeCC--eEEEEEecCCCCHHHHHHHHHHhhC--CCccceEEEEcCcccccCCccccccCc
Q 007773 32 DSILIFL-SVGG--SVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGL 94 (590)
Q Consensus 32 ~sM~I~V-tl~G--~t~~l~V~~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dygI 94 (590)
.+..+++ ..+. +-.+|..+..-||++||.-+....- =-...|||+|.|+.|. |+.+|.|.-+
T Consensus 8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgklll-d~qcl~d~lr 74 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLL-DHQCLTDWLR 74 (391)
T ss_pred cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccc-cchhHHHHHH
Confidence 4455566 3333 4566677789999999998887642 2256799999999997 8888877644
No 245
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=33.89 E-value=47 Score=36.38 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=53.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC-CCCcccccCCCCCCEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE-DQRLITDICKRNEAVIH 179 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~Le-D~~tL~dy~I~~gsvI~ 179 (590)
-.|.||..+|+.+...++.+.||.+|+.-|...-.-. +...+.|+ |=-+.|. +..||.+-++.|-.++.
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~-~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq 377 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGD-SSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ 377 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCC-cCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence 3578888999999999999999999999999887533 13455555 5677885 57889998887665544
No 246
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=33.38 E-value=2e+02 Score=22.76 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=40.1
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 38 Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
|+.+|+.+.+ .+..|+.++...+. ++ ....+..+|..+.+ ..-.+.-+++|+.|.++....|
T Consensus 3 i~vNg~~~~~--~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~--~~~~~~~L~~gD~vei~~~v~G 64 (65)
T PRK06944 3 IQLNQQTLSL--PDGATVADALAAYG----AR-PPFAVAVNGDFVAR--TQHAARALAAGDRLDLVQPVAG 64 (65)
T ss_pred EEECCEEEEC--CCCCcHHHHHHhhC----CC-CCeEEEECCEEcCc--hhcccccCCCCCEEEEEeeccC
Confidence 4567776654 56778988887653 33 23455678887752 2334455789999988766554
No 247
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=33.05 E-value=1.2e+02 Score=24.17 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=42.9
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
+++|+.+.+ ..+.||.+|...+ +++++.-.+..+|+.+.+ ..-.++-+++|+.|.++....|
T Consensus 2 ~iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~--~~~~~~~L~~gD~veii~~V~G 63 (64)
T TIGR01683 2 TVNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPR--SEWDDTILKEGDRIEIVTFVGG 63 (64)
T ss_pred EECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH--HHcCceecCCCCEEEEEEeccC
Confidence 356666655 4567888888764 566666667789998862 3345567889999988765554
No 248
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=32.71 E-value=2.1e+02 Score=22.99 Aligned_cols=63 Identities=8% Similarity=0.110 Sum_probs=42.6
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 38 Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
++.+|+.+.+ ....|+.+|... .++....-.+-.++..+.+ ..-..+-+++|+.|.++-...|
T Consensus 3 i~vNg~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r--~~w~~~~L~~gD~Ieii~~v~G 65 (66)
T PRK08053 3 ILFNDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPR--EQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_pred EEECCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh--HHcCccccCCCCEEEEEEEccC
Confidence 4557777666 456788888765 3455455567789998863 3455566889999988765554
No 249
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=31.99 E-value=2e+02 Score=23.37 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=43.5
Q ss_pred EEEeCCeEEEEEecCC-CCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 37 FLSVGGSVIPMRVMES-DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 37 ~Vtl~G~t~~l~V~~s-dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
.|+++|+.+.+ ... .||.++-. ..++++..--+..+|..+. ...-..+-+++|+.|.++--..|
T Consensus 2 ~I~vNG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~--r~~w~~~~L~~gD~iEIv~~VgG 66 (67)
T PRK07696 2 NLKINGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQ--KDDHTDTSVFDGDQIEIVTFVGG 66 (67)
T ss_pred EEEECCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeC--HHHcCceecCCCCEEEEEEEecC
Confidence 34567776655 333 46666554 4577777667779999997 34566677899999987655443
No 250
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=31.54 E-value=2.2e+02 Score=23.58 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=44.8
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 35 ~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
.+++.++|+.+.+ ....|+++|-.. .|++...--...+|..+. ...-.++-+++|+.|.++--..
T Consensus 2 ~m~i~~ng~~~e~--~~~~tv~dLL~~----l~~~~~~vav~vNg~iVp--r~~~~~~~l~~gD~ievv~~v~ 66 (68)
T COG2104 2 PMTIQLNGKEVEI--AEGTTVADLLAQ----LGLNPEGVAVAVNGEIVP--RSQWADTILKEGDRIEVVRVVG 66 (68)
T ss_pred cEEEEECCEEEEc--CCCCcHHHHHHH----hCCCCceEEEEECCEEcc--chhhhhccccCCCEEEEEEeec
Confidence 4555666666544 455788887654 678777777789999987 3456677788888887654433
No 251
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=30.80 E-value=60 Score=26.31 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=45.4
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
..| ...+.+....||.+|.+.+..............+..+|+...+ .-.+.-+++++.|.++
T Consensus 10 ~~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 10 IAG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAIL 71 (77)
T ss_dssp HHT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEE
T ss_pred HhC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEE
Confidence 345 6778888999999999999888731101366788899999987 2345566788888875
No 252
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=30.73 E-value=1.9e+02 Score=23.07 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=36.4
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
.+|+.+.+ +. .|+.+|.+.+ ++. ++...+-.+++.+.- ..-.+.-+++|+.|.++-
T Consensus 5 ~Ng~~~~~--~~-~tl~~Ll~~l----~~~--~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 5 VNGETLQT--EA-TTLALLLAEL----DYE--GNWLATAVNGELVHK-EARAQFVLHEGDRIEILS 60 (65)
T ss_pred ECCeEEEc--Cc-CcHHHHHHHc----CCC--CCeEEEEECCEEcCH-HHcCccccCCCCEEEEEE
Confidence 45777766 33 5888877654 444 455567789988862 222355578899988753
No 253
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=30.29 E-value=1.5e+02 Score=25.37 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEc
Q 007773 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~ 78 (590)
|+.|.+.+..+..+|..+|.++...++..-+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 68889999999999999999999999999999986
No 254
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=29.57 E-value=1.6e+02 Score=23.80 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=47.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCC--CccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 44 VIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...+.+....||.+|...+.....- ....-.+..+|+... + .-.++-+++|+.|.++...+|+
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~-~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVP-D--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEG-G--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcC-C--ccCCcCcCCCCEEEEECCCCCC
Confidence 5677788999999999999887531 124456778898886 4 4566778899999988776654
No 255
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=28.95 E-value=1.6e+02 Score=24.39 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=33.5
Q ss_pred EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC
Q 007773 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (590)
Q Consensus 36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (590)
+.| -.+|+...+.|.|+.||.++-.++-++.|+.+..-.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 445 45789999999999999999999999999988866665444
No 256
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=28.36 E-value=27 Score=46.39 Aligned_cols=49 Identities=31% Similarity=0.482 Sum_probs=40.6
Q ss_pred hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCc
Q 007773 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCT 464 (590)
Q Consensus 413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~ 464 (590)
..+..+.|..|+++=-|||.||||+... .|+ ++-||=|+||-.....-+
T Consensus 1932 ~SlA~ySvigYiLglgDRH~~NIliD~~-sG~--viHiDFg~il~~~p~~~~ 1980 (2105)
T COG5032 1932 RSLAVYSVIGYILGLGDRHPGNILIDRS-SGH--VIHIDFGFILFNAPGRFP 1980 (2105)
T ss_pred HHHHHHHHHHHHccCCCcCCceEEEEcC-CCc--EEEehHHHHHhcCCCCCC
Confidence 4578899999999999999999999884 366 999999999986654333
No 257
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.95 E-value=19 Score=34.52 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=43.3
Q ss_pred CcEEEEEeCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcCCCccCCCchhhhhhhhhhccC
Q 007773 280 GGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHP 344 (590)
Q Consensus 280 ~Gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~g~~~g~~~g~g~~rEvAAylLD~~ 344 (590)
-|+|.++|-+ ...+=+=.+++.|+.--| +...++||+-||.+.+.|+.+=|-|.+-+.|
T Consensus 94 rG~yVlqD~~---Fr~l~~~s~G~~~~~~a~---~flaFpcGliRGvLs~LGi~siVtA~v~slP 152 (163)
T KOG3316|consen 94 RGTYVLQDNK---FRWLTSMSPGTQYLEEAP---KFLAFPCGLIRGVLSNLGISSIVTASVSSLP 152 (163)
T ss_pred CceEEEecCc---eeeeeecCchhHHHHhcC---CeEEeehhHHHHHHhhCCCceEEeeecCCCC
Confidence 4999999854 333333346666666555 4566899999999999999998888877654
No 258
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=27.72 E-value=1.8e+02 Score=24.22 Aligned_cols=35 Identities=14% Similarity=-0.036 Sum_probs=30.7
Q ss_pred eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE
Q 007773 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155 (590)
Q Consensus 121 ~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li 155 (590)
..++.|..+.|+.+|-+.+.+++++..++.+..|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 67789999999999999999999985567888885
No 259
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=26.83 E-value=2.3e+02 Score=31.90 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=56.1
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCC----Cccce--EEE-EcCcccccCCccccccCcccccceeEEeee
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGF----FVKKQ--KLV-FEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gi----p~~~Q--rLv-f~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
.+++|.-..+.+.+-+..+..|.++--.|.+..|- +.... .|. .+|..|+ .+.+|.+.||.||++++|..+-
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~-~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLD-PDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCC-CCCCHHHcCCCCCCeEEEeeCC
Confidence 46677445567888788899999999999888764 11222 233 5788997 8999999999999999998754
Q ss_pred ccc
Q 007773 107 SDL 109 (590)
Q Consensus 107 sd~ 109 (590)
...
T Consensus 82 ~~~ 84 (452)
T TIGR02958 82 ATE 84 (452)
T ss_pred CCC
Confidence 433
No 260
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=26.82 E-value=37 Score=38.99 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=29.0
Q ss_pred eeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCC
Q 007773 420 VLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (590)
Q Consensus 420 ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp 457 (590)
||.--+.-+|=|.|||||..+..+..+++.||.|++--
T Consensus 276 if~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~ 313 (537)
T PRK04750 276 VFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGS 313 (537)
T ss_pred HHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEE
Confidence 35667889999999999988622233588999999644
No 261
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=26.73 E-value=1.8e+02 Score=25.20 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=37.8
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc
Q 007773 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (590)
Q Consensus 35 ~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (590)
+..|+.+|.+..+.+...-|-+.|++||+..+.+|....-+.|-..
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDe 47 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDN 47 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcC
Confidence 3456778888888888889999999999999999987777777443
No 262
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=26.38 E-value=2.3e+02 Score=25.92 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=39.3
Q ss_pred CCEEEEEEeCC-----eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc
Q 007773 32 DSILIFLSVGG-----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81 (590)
Q Consensus 32 ~sM~I~Vtl~G-----~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~ 81 (590)
..++|.+...| +.-...|++++|++.+-..|.+..++++..|..+|-...
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 45666664333 356678999999999999999999999999988775554
No 263
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=25.83 E-value=64 Score=32.38 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCEEEEE-Ee-------CCeEEEEEecCCCCHHHHHHHHHHhhCCCcc
Q 007773 32 DSILIFL-SV-------GGSVIPMRVMESDSIASVKLRIQSYNGFFVK 71 (590)
Q Consensus 32 ~sM~I~V-tl-------~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~ 71 (590)
+.+.|.| .+ -|-.+.+.|.+++|..++|.||+++.|++.+
T Consensus 114 ~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 114 GEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred cceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 3577877 32 2556888999999999999999999999854
No 264
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=25.79 E-value=3.4e+02 Score=22.45 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=39.0
Q ss_pred eeEEEeecC-CcHHHHHHHHHHhcC-CCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 121 VFEFHVERG-RNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 121 ~~~i~Vd~s-~TV~~LK~kI~~~~g-i~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
...+++... .||.+|++.+.+++. .........+..+|+...+ +.-+++|+.|.++
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 356777776 899999999998874 1101234567778888774 4456778888875
No 265
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=25.77 E-value=2.1e+02 Score=23.63 Aligned_cols=52 Identities=13% Similarity=-0.016 Sum_probs=35.7
Q ss_pred eeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC--CEEcCCCCcc
Q 007773 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD--GEELEDQRLI 167 (590)
Q Consensus 114 Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~--Gk~LeD~~tL 167 (590)
|.-.+|+...+.|.++.||.++-.++.++.++. ++...++.. .+.|.-+...
T Consensus 5 v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~--~~~~~V~~~~~~k~l~~~~d~ 58 (71)
T PF02196_consen 5 VHLPNGQRTVVQVRPGMTIRDALSKACKKRGLN--PECCDVRLVGEKKPLDWDQDS 58 (71)
T ss_dssp EEETTTEEEEEEE-TTSBHHHHHHHHHHTTT----CCCEEEEEEEEEEEE-TTSBG
T ss_pred EECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCC--HHHEEEEEcCCCccccCCCce
Confidence 444678889999999999999999999999987 666666543 3444444333
No 266
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=25.65 E-value=3.4e+02 Score=23.81 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=45.3
Q ss_pred CCCEEEEE-Ee-CCeEEEEEecCCCCHHHHHHHHHHh----hCCCcc--ceEEEEcCcc--cccCCccccccC-----cc
Q 007773 31 NDSILIFL-SV-GGSVIPMRVMESDSIASVKLRIQSY----NGFFVK--KQKLVFEGRE--LARSNSRVRDYG-----LA 95 (590)
Q Consensus 31 ~~sM~I~V-tl-~G~t~~l~V~~sdTV~~LK~kIq~~----~Gip~~--~QrLvf~Gk~--L~~D~~tL~dyg-----I~ 95 (590)
.+.+.|.| .. .+..+++.++.+.|+.+|-..+-.+ .+.+.. +-.|--.|+. |. .+..|.+|. +.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~-g~~~L~~y~yIr~cl~ 92 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLL-GDHPLSQYEYIRQCLK 92 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE--SSS-GGGBHHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEee-CCeeeeccHHHHHHHh
Confidence 56788888 44 4688999999999999999887777 222211 3355566775 55 566777775 33
Q ss_pred cccceeEEe
Q 007773 96 DGNVLHLVL 104 (590)
Q Consensus 96 ~gstL~Lvl 104 (590)
.+..++|++
T Consensus 93 ~~~~~~L~L 101 (106)
T PF00794_consen 93 RGKDPHLVL 101 (106)
T ss_dssp CT--EEEEE
T ss_pred cCCCcEEEE
Confidence 455555544
No 267
>KOG4261 consensus Talin [Cytoskeleton]
Probab=25.42 E-value=1.7e+02 Score=35.11 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=86.5
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCC---ccceEEEEc------CcccccCCccccccCcccccceeEEee
Q 007773 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLVFE------GRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 35 ~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip---~~~QrLvf~------Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
.+.|...+-+-+|.+.|+.+|.+-=.-|.+++-.. +..-.|+.. |--|+ ...+|.+|-+.+++++.-.
T Consensus 5 sl~i~~~~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle-~grt~~~y~~~n~d~~ey~-- 81 (1003)
T KOG4261|consen 5 SLKISSANVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLE-AGRTLDYYMLRNGDTLEYK-- 81 (1003)
T ss_pred EEEEEecceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeec-CCccHHHHHHhcccccchh--
Confidence 34444446678899999999988766666653211 333334322 44576 8889999988888887532
Q ss_pred ecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC
Q 007773 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE 162 (590)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~Le 162 (590)
.......|+.++|-.-++.|+.+.+|..|---|+.+.||. .-+...|+-...+++
T Consensus 82 -~k~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igIt-nyeeyslvre~~~~~ 136 (1003)
T KOG4261|consen 82 -RKQRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT-NYEEYSLVREDIEEQ 136 (1003)
T ss_pred -hhcccceeeecccccceeeecccccHHHHHHHHHhccCcc-chhhhhhhHHHHHHh
Confidence 2346678899999999999999999999999999999976 244555554444443
No 268
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=25.11 E-value=1.2e+02 Score=25.98 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=32.1
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G 158 (590)
-++.+.+.+..+..+|..+|+++...+ ++.-.|.|..
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~--~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQ--AQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCC--hhhcEEEecC
Confidence 356688999999999999999999988 8888898854
No 269
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.06 E-value=40 Score=45.05 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=39.1
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCc
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCT 464 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~ 464 (590)
.|.-=.|+=|+++=.|||+-||||... ..+++-||-|.+|-..--.+|
T Consensus 2616 svA~sS~VGyILGLGDRH~qNILid~~---taEviHIDlGiAFEQGkilpt 2663 (2806)
T KOG0892|consen 2616 SVAASSMVGYILGLGDRHGQNILIDQQ---TAEVIHIDLGIAFEQGKILPT 2663 (2806)
T ss_pred hHHHHHHHHHHhcccchhhhheeeccc---ccceEEEeeeeehhcCCcCCC
Confidence 466667889999999999999999874 456999999999986555444
No 270
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=25.02 E-value=1.8e+02 Score=23.80 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=31.6
Q ss_pred cceeeEEEee-cCCcHHHHHHHHHHhcCCCCCCCcEEEEECCE
Q 007773 118 CGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (590)
Q Consensus 118 ~Gk~~~i~Vd-~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk 159 (590)
.|....+.+. .+.+..+|+++|+++++.. .....+.|.+.
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~y~D~ 48 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLD--AVSFKLKYPDE 48 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCC--CCcEEEEeeCC
Confidence 3567788888 8999999999999999976 45666666553
No 271
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=24.94 E-value=1.1e+02 Score=26.93 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=43.9
Q ss_pred cceeeec-cceeeEEEeecCCcHHHHHHHHHHh----cCCCCCCCcEEEEECCEE--cCCCCccccc-----CCCCCCEE
Q 007773 111 AITVTTV-CGKVFEFHVERGRNVGYVKQQIAKK----GREFVDLKNQELICDGEE--LEDQRLITDI-----CKRNEAVI 178 (590)
Q Consensus 111 ~I~Vkt~-~Gk~~~i~Vd~s~TV~~LK~kI~~~----~gi~~~~~~Q~Lif~Gk~--LeD~~tL~dy-----~I~~gsvI 178 (590)
.|.|... .+..+++.|+.+.|+.+|-+++-.+ .+...+.++..|--.|+. |..+..|.+| |++.+-.+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 3444443 5678999999999999998888666 222211125566655543 6677778887 45677788
Q ss_pred EEEee
Q 007773 179 HLLVR 183 (590)
Q Consensus 179 ~L~vr 183 (590)
+|.+.
T Consensus 98 ~L~Lv 102 (106)
T PF00794_consen 98 HLVLV 102 (106)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87754
No 272
>PF07924 NuiA: Nuclease A inhibitor-like protein; InterPro: IPR012489 This family consists of protein sequences that are similar to the nuclease A inhibitor expressed by bacteria of the genus Anabaena (NuiA, Q44296 from SWISSPROT). This sequence is organised to form an alpha-beta-alpha sandwich fold, which is similar to the PR-1-like fold. NuiA interacts with nuclease A by means of residues located at one end of the molecule, including residues making up the loop between helices III and IV and the loop between strands C and D. The mechanism of inhibition of nuclease A by NuiA is as yet incompletely understood []. ; PDB: 2O3B_B 1J57_A 1KTU_A.
Probab=23.94 E-value=34 Score=32.13 Aligned_cols=38 Identities=24% Similarity=0.659 Sum_probs=26.3
Q ss_pred cCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChH
Q 007773 452 HGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAE 491 (590)
Q Consensus 452 hGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~ 491 (590)
+||-||++ .+++|+|.+| +...|++++.+.....+-++
T Consensus 16 ~GLL~~SE-SdyPfe~f~w-~~~~~lt~~~v~~~~g~~~~ 53 (133)
T PF07924_consen 16 DGLLMPSE-SDYPFEVFYW-DPAEPLTPEKVLQLTGHPPD 53 (133)
T ss_dssp TTS-EESS-SEE--EEEEE-S-SSSSSTTHHHHHHT-TTT
T ss_pred cCceeccc-CCCcceEEEe-cCCCCCCHHHHHHHhCCCCC
Confidence 57777765 4599999999 78899999998887766554
No 273
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=23.40 E-value=2.1e+02 Score=24.31 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=36.1
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc
Q 007773 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (590)
Q Consensus 40 l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (590)
.+|+...+.+.|+.||.++-.++-++.|+.+..-.++..|.
T Consensus 7 Pdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 7 PDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 47788999999999999999999999999988777776664
No 274
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=23.16 E-value=2.4e+02 Score=23.38 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=36.7
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhcCCCCC-CCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKGREFVD-LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~-~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
....+++....||.+|++.+......... .....+..+|+... .+.-+++|+.|.++
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 44667777888999999999776521100 01224667888764 34456778888875
No 275
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=22.87 E-value=1.9e+02 Score=34.89 Aligned_cols=79 Identities=14% Similarity=0.255 Sum_probs=60.5
Q ss_pred cceeeEEEeec-CCcHHHHHHHHHHhcCCCCCCCcEEEE-ECCEEcCCCCcccccC--CCCCCEEEEEeecCCCccCCCC
Q 007773 118 CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELI-CDGEELEDQRLITDIC--KRNEAVIHLLVRKSAKVRAKPV 193 (590)
Q Consensus 118 ~Gk~~~i~Vd~-s~TV~~LK~kI~~~~gi~~~~~~Q~Li-f~Gk~LeD~~tL~dy~--I~~gsvI~L~vrks~kv~~~p~ 193 (590)
.|..++++.+. ..|+.+||..|+.+.|+. ..+|.++ -+|.-+.-++.+..|+ =++.+.|+++........-.+.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~a--Iq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~lcde~~a 80 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHA--IQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGLCDENHA 80 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchh--hceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhccccCCCC
Confidence 47778888776 569999999999999987 6677655 5777888888888887 3677889988777776665555
Q ss_pred cccce
Q 007773 194 QKDFE 198 (590)
Q Consensus 194 ~kd~e 198 (590)
+-|+.
T Consensus 81 ~pdtT 85 (1424)
T KOG4572|consen 81 GPDTT 85 (1424)
T ss_pred CCCce
Confidence 55544
No 276
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.70 E-value=3.1e+02 Score=28.99 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=49.7
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccccC--CccccccCcccccceeE
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstL~L 102 (590)
-.+-.|.| ..+|+++...+.+..|...|+.-|+...|...+--.|. |-...+.+| ..+|...++...+++.+
T Consensus 208 ys~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred ccceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 46788888 45999999999999999999999999988755222221 222223322 25677777776666543
No 277
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=22.47 E-value=2.2e+02 Score=23.77 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=30.9
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li 155 (590)
+...++.|..+.|..+|-+.+.+++++..++++..|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5567799999999999999999999977456666666
No 278
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=21.96 E-value=74 Score=26.54 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=40.5
Q ss_pred cCCCCcccCCCCCcEEEEEeCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcCCCccCCCchhhhhhhhhhccCCCC
Q 007773 268 RGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDA 347 (590)
Q Consensus 268 ~g~~p~~~~~Gs~Gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~g~~~g~~~g~g~~rEvAAylLD~~~~~ 347 (590)
.|..|+++..=.+|.|......+ ..-.|.||..... .|. + ...|.+++.|-+
T Consensus 3 ~G~qpK~~~~~~~~~~~~~~~~~-~~~~IvK~~~~~~----~~~---------------~----~~nE~~~~~lA~---- 54 (81)
T PF07805_consen 3 GGAQPKLLLTLDPGRWALPAGDA-PSTHIVKFPSSRD----DPD---------------L----VENEYACMRLAR---- 54 (81)
T ss_dssp -SSSCEEEEEEETTEEEEEETT----SEEEE-S-CEE----ETT---------------H----HHHHHHHHHHHH----
T ss_pred cccceeEEEEEcCCceeecCCCC-CceEEEeCCCccc----ccc---------------h----HHHHHHHHHHHH----
Confidence 47778876654557777776554 3578999988751 121 2 689999999985
Q ss_pred cccccccccCCCCCCceEEEEecc
Q 007773 348 TYSLHDEERGFAGVPPTVMVRCLH 371 (590)
Q Consensus 348 ~~~~~~~~~gf~~VP~T~lv~~~~ 371 (590)
.+|+ -||.|.++...+
T Consensus 55 -------~~Gi-~v~~~~l~~~~~ 70 (81)
T PF07805_consen 55 -------AAGI-PVPETRLIRFGD 70 (81)
T ss_dssp -------HTT------EEEEEETT
T ss_pred -------HcCC-CcCceEEEEECC
Confidence 6798 889999987543
No 279
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=21.92 E-value=6.4e+02 Score=24.29 Aligned_cols=112 Identities=18% Similarity=0.276 Sum_probs=69.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCccccccee----EEeeeccc-ccceeeecc
Q 007773 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH----LVLRLSDL-QAITVTTVC 118 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~----LvlrLsd~-m~I~Vkt~~ 118 (590)
.++-++..-+|.+.|-.+|....|+ .|++.+|..|.. ---||...|.-+. -.++..|. +.+.|++
T Consensus 4 IfP~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk----~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V-- 73 (150)
T TIGR03260 4 IFPHRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPK----KVPYGPARGLPVNHPDRKTIRVKGEDVELRVQV-- 73 (150)
T ss_pred EechhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCCC----CCCCCcccCCCCCCCcceEEEECCEEEEEEEEE--
Confidence 3455667778999999998887777 588999999982 2247776663222 22233221 4444444
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK 172 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I 172 (590)
| .+-++++..+.+..+++--.+.+-.+ . -+..|+-+....|++||-.
T Consensus 74 G-rI~le~~~~~~i~~I~eiC~e~~pF~--y----~i~~g~f~r~~~TvtDY~K 120 (150)
T TIGR03260 74 G-RIILELEDEDIVEEIEEICKEMLPFG--Y----EVRVGKFLRTKPTVTDYIK 120 (150)
T ss_pred e-EEEEEecCHHHHHHHHHHHHhhCCCc--e----EeeeeeEeecCCchhhhhh
Confidence 3 35566666667777765333333211 1 2456778999999999963
No 280
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=21.88 E-value=1.1e+02 Score=32.43 Aligned_cols=36 Identities=25% Similarity=0.562 Sum_probs=28.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHcCCCCcccCCCCCcEEEEEeCCCC
Q 007773 246 ESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQ 291 (590)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~Gs~Gsyf~~~~~g~ 291 (590)
..++-+--....||+++.+||.+ +|||||.+..+|.
T Consensus 120 G~gvyLv~~~a~LvqdIi~AlNr----------TGGSyy~~G~ngg 155 (305)
T PF04639_consen 120 GVGVYLVFSAATLVQDIIDALNR----------TGGSYYYRGNNGG 155 (305)
T ss_pred eeEEEEEEEHHHHHHHHHHHHHh----------CCCeeEEEccCCC
Confidence 34455555678999999999987 8999999987764
No 281
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.75 E-value=1.2e+02 Score=32.76 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=42.9
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccc-------cCCccccccCcccccceeE
Q 007773 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELA-------RSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 45 ~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~-------~D~~tL~dygI~~gstL~L 102 (590)
...-|.-+-||.++|.++..+.|+-+.+++|+|-...-. +-+..|-.|+|++|+.+.+
T Consensus 350 ~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 350 ASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred cceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 344456677999999999999999999999997533211 2456677777888877643
No 282
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=21.74 E-value=2.7e+02 Score=22.83 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=32.0
Q ss_pred cceeeE-EEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC
Q 007773 118 CGKVFE-FHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (590)
Q Consensus 118 ~Gk~~~-i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G 158 (590)
.|.... +.+.+..+..+|+.+|+++++.. .....|.|.+
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLL--DEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTS--TSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCC--CccEEEEeeC
Confidence 344555 88999999999999999999976 6788888854
No 283
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.41 E-value=65 Score=22.62 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCCHhhHhcccc
Q 007773 516 TMLLKKGVDRGLTPFDIGCIMC 537 (590)
Q Consensus 516 t~~Lk~~~~~gl~~~~i~~~~~ 537 (590)
..|+++|.+.|+|..||-..+.
T Consensus 6 ~~Li~eA~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 6 VELIKEAKESGLSKEEIREFLE 27 (30)
T ss_dssp HHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 3578999999999999877654
No 284
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=21.13 E-value=1.8e+02 Score=25.50 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=35.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceE
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQK 74 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~Qr 74 (590)
..|.| -.+|.++.++|..+++..+|=+.+.++.|+|.+-+.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 35566 457999999999999999999999999999977654
No 285
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=20.46 E-value=4.1e+02 Score=23.76 Aligned_cols=37 Identities=5% Similarity=0.010 Sum_probs=31.8
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV 70 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~ 70 (590)
..|.| ..++...++.+..+.||.++-..++++..++.
T Consensus 3 y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~ 40 (97)
T cd01775 3 YCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS 40 (97)
T ss_pred eEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC
Confidence 45677 66778899999999999999999999987765
No 286
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=20.35 E-value=4.4e+02 Score=22.02 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=37.4
Q ss_pred eeEEEeecCCcHHHHHHHHHHhcCC-----CC---C-CCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 121 VFEFHVERGRNVGYVKQQIAKKGRE-----FV---D-LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 121 ~~~i~Vd~s~TV~~LK~kI~~~~gi-----~~---~-~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
...++++ ..||.+|.+.+.+++.- .. . -....+..+|+....... .-+++|+.|.++
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEe
Confidence 4667776 78999999999888641 10 0 123556678887754321 457788888875
Done!