Query 007773
Match_columns 590
No_of_seqs 399 out of 2311
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 100.0 9.1E-31 3.1E-35 249.7 17.7 152 30-184 17-169 (172)
2 3rt3_B Ubiquitin-like protein 100.0 2.5E-30 8.5E-35 243.1 19.0 150 33-185 2-155 (159)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 2.3E-28 7.8E-33 226.4 18.8 149 34-185 1-150 (152)
4 2kdi_A Ubiquitin, vacuolar pro 99.7 1.5E-17 5.2E-22 148.7 4.0 103 31-134 7-113 (114)
5 4eew_A Large proline-rich prot 99.6 6.1E-16 2.1E-20 131.0 9.1 88 93-183 1-88 (88)
6 3phx_B Ubiquitin-like protein 99.6 9.3E-16 3.2E-20 127.2 9.3 77 31-108 2-79 (79)
7 1yx5_B Ubiquitin; proteasome, 99.6 1.8E-15 6.2E-20 131.0 9.0 91 34-125 1-92 (98)
8 3plu_A Ubiquitin-like modifier 99.6 2.1E-15 7.3E-20 129.7 9.1 78 102-181 14-91 (93)
9 3dbh_I NEDD8; cell cycle, acti 99.6 2.2E-15 7.5E-20 127.0 9.0 82 27-109 6-88 (88)
10 3plu_A Ubiquitin-like modifier 99.6 2.5E-15 8.6E-20 129.3 8.4 72 31-103 19-91 (93)
11 3v6c_B Ubiquitin; structural g 99.6 4.3E-15 1.5E-19 126.9 9.3 77 30-107 14-91 (91)
12 3phx_B Ubiquitin-like protein 99.6 5.5E-15 1.9E-19 122.5 9.5 75 108-184 3-77 (79)
13 4fbj_B NEDD8; effector-HOST ta 99.6 3.3E-15 1.1E-19 127.1 8.3 77 34-111 1-78 (88)
14 4hcn_B Polyubiquitin, ubiquiti 99.6 5.8E-15 2E-19 128.1 8.6 79 30-109 19-98 (98)
15 2uyz_B Small ubiquitin-related 99.5 6.7E-15 2.3E-19 122.0 7.6 77 32-109 2-79 (79)
16 2faz_A Ubiquitin-like containi 99.5 1.4E-14 5E-19 119.5 9.2 76 108-185 1-78 (78)
17 4dwf_A HLA-B-associated transc 99.5 1.9E-14 6.6E-19 122.2 9.5 77 31-109 3-80 (90)
18 2kk8_A Uncharacterized protein 99.5 1.4E-14 4.9E-19 122.5 8.6 74 31-105 8-83 (84)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 2.4E-14 8.2E-19 120.6 9.8 79 31-110 5-84 (87)
20 4dwf_A HLA-B-associated transc 99.5 2.1E-14 7.2E-19 122.0 9.4 79 108-189 4-82 (90)
21 1ndd_A NEDD8, protein (ubiquit 99.5 1.7E-14 5.8E-19 117.7 8.4 75 34-109 1-76 (76)
22 2dzi_A Ubiquitin-like protein 99.5 2.7E-14 9.4E-19 118.3 9.8 76 30-106 4-80 (81)
23 2faz_A Ubiquitin-like containi 99.5 1.9E-14 6.6E-19 118.8 8.8 75 32-107 1-78 (78)
24 2kan_A Uncharacterized protein 99.5 2.6E-14 8.7E-19 123.4 9.7 81 27-109 9-91 (94)
25 2kk8_A Uncharacterized protein 99.5 1.7E-14 5.9E-19 122.0 8.2 74 109-184 10-84 (84)
26 1wyw_B Ubiquitin-like protein 99.5 1.4E-14 4.9E-19 125.5 7.8 78 31-109 19-97 (97)
27 3n3k_B Ubiquitin; hydrolase, p 99.5 1.4E-14 4.9E-19 121.1 7.4 77 32-109 2-79 (85)
28 1wy8_A NP95-like ring finger p 99.5 3.5E-14 1.2E-18 120.2 9.8 79 31-110 5-86 (89)
29 2hj8_A Interferon-induced 17 k 99.5 1.3E-14 4.4E-19 123.3 7.1 78 31-109 2-80 (88)
30 1uh6_A Ubiquitin-like 5; beta- 99.5 1.7E-14 5.7E-19 126.1 7.9 73 31-104 26-99 (100)
31 3mtn_B UBA80, ubcep1, ubiquiti 99.5 2.4E-14 8.2E-19 119.6 8.6 77 32-109 2-79 (85)
32 4fbj_B NEDD8; effector-HOST ta 99.5 2.4E-14 8.3E-19 121.8 8.6 74 110-185 1-74 (88)
33 3m62_B UV excision repair prot 99.5 1.8E-14 6E-19 127.1 7.9 79 110-190 2-80 (106)
34 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 3.1E-14 1E-18 122.3 9.0 79 33-112 1-80 (96)
35 4eew_A Large proline-rich prot 99.5 3.6E-14 1.2E-18 120.0 9.3 73 31-105 15-88 (88)
36 3l0w_B Monoubiquitinated proli 99.5 3E-14 1E-18 135.8 9.8 83 34-117 1-84 (169)
37 3a9j_A Ubiquitin; protein comp 99.5 3.8E-14 1.3E-18 115.5 9.0 75 34-109 1-76 (76)
38 2wyq_A HHR23A, UV excision rep 99.5 5.3E-14 1.8E-18 117.9 9.9 77 107-185 3-82 (85)
39 2lxa_A Ubiquitin-like protein 99.5 2E-14 6.8E-19 122.7 6.8 74 110-185 2-79 (87)
40 1sif_A Ubiquitin; hydrophobic 99.5 3.5E-14 1.2E-18 120.8 8.2 77 32-109 8-85 (88)
41 1uel_A HHR23B, UV excision rep 99.5 8.9E-14 3.1E-18 119.9 10.8 78 110-189 1-81 (95)
42 4a20_A Ubiquitin-like protein 99.5 4.2E-14 1.4E-18 123.3 8.7 77 107-185 17-97 (98)
43 2l7r_A Ubiquitin-like protein 99.5 2.8E-14 9.5E-19 122.8 7.5 78 30-109 16-93 (93)
44 1uh6_A Ubiquitin-like 5; beta- 99.5 2.6E-14 8.9E-19 124.9 7.4 71 109-181 28-98 (100)
45 3v6c_B Ubiquitin; structural g 99.5 5E-14 1.7E-18 120.3 9.0 75 107-183 15-89 (91)
46 1v2y_A 3300001G02RIK protein; 99.5 1.9E-14 6.6E-19 126.9 6.0 79 31-109 5-99 (105)
47 2uyz_B Small ubiquitin-related 99.5 5.1E-14 1.7E-18 116.6 8.2 75 109-185 3-77 (79)
48 3vdz_A Ubiquitin-40S ribosomal 99.5 6.8E-14 2.3E-18 124.3 9.1 78 31-109 33-111 (111)
49 3q3f_A Ribonuclease/ubiquitin 99.5 3.6E-14 1.2E-18 137.5 7.8 82 33-115 105-187 (189)
50 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 1.1E-13 3.9E-18 116.4 9.9 75 108-184 6-80 (87)
51 1ndd_A NEDD8, protein (ubiquit 99.5 1.2E-13 4.2E-18 112.5 9.3 73 110-184 1-73 (76)
52 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 1.1E-13 3.8E-18 118.8 9.5 77 109-187 1-77 (96)
53 3m63_B Ubiquitin domain-contai 99.5 2.3E-14 7.9E-19 125.4 5.2 94 86-184 7-100 (101)
54 1wgh_A Ubiquitin-like 3, HCG-1 99.5 1.6E-13 5.4E-18 123.1 10.7 79 107-185 14-100 (116)
55 1wyw_B Ubiquitin-like protein 99.5 8.8E-14 3E-18 120.5 8.7 77 107-185 19-95 (97)
56 3dbh_I NEDD8; cell cycle, acti 99.5 6.8E-14 2.3E-18 117.8 7.8 75 108-184 11-85 (88)
57 2hj8_A Interferon-induced 17 k 99.5 6.5E-14 2.2E-18 119.0 7.7 76 108-185 3-78 (88)
58 2wyq_A HHR23A, UV excision rep 99.5 1.7E-13 5.9E-18 114.7 9.7 76 31-107 3-82 (85)
59 3rt3_B Ubiquitin-like protein 99.5 1.2E-13 4.2E-18 129.1 9.3 79 31-110 79-158 (159)
60 3n3k_B Ubiquitin; hydrolase, p 99.5 1.5E-13 5.1E-18 114.8 8.9 75 109-185 3-77 (85)
61 2lxa_A Ubiquitin-like protein 99.5 4.6E-14 1.6E-18 120.5 5.7 72 34-106 2-78 (87)
62 3a9j_A Ubiquitin; protein comp 99.5 2.2E-13 7.4E-18 111.0 9.6 74 110-185 1-74 (76)
63 1sif_A Ubiquitin; hydrophobic 99.5 1.3E-13 4.5E-18 117.2 8.6 76 108-185 8-83 (88)
64 1j8c_A Ubiquitin-like protein 99.5 4.1E-13 1.4E-17 121.9 12.3 77 31-109 30-107 (125)
65 1wy8_A NP95-like ring finger p 99.5 2.6E-13 8.9E-18 114.9 10.2 77 108-186 6-84 (89)
66 4a20_A Ubiquitin-like protein 99.5 1.4E-13 4.8E-18 120.0 8.7 75 31-106 17-96 (98)
67 2dzi_A Ubiquitin-like protein 99.5 1.7E-13 5.8E-18 113.5 8.7 75 108-184 6-80 (81)
68 3b1l_X E3 ubiquitin-protein li 99.2 6.7E-15 2.3E-19 120.8 0.0 74 34-108 1-75 (76)
69 2fnj_B Transcription elongatio 99.4 1.2E-13 3.9E-18 124.1 7.8 74 34-109 1-83 (118)
70 4hcn_B Polyubiquitin, ubiquiti 99.4 1.7E-13 5.7E-18 118.8 8.5 76 107-184 20-95 (98)
71 2bwf_A Ubiquitin-like protein 99.4 3.4E-13 1.2E-17 110.5 9.7 72 110-184 5-76 (77)
72 1wgd_A Homocysteine-responsive 99.4 1.4E-13 4.7E-18 118.1 7.6 78 31-109 5-89 (93)
73 1ttn_A DC-UBP, dendritic cell- 99.4 1.8E-13 6.1E-18 120.5 8.3 78 30-108 20-98 (106)
74 3mtn_B UBA80, ubcep1, ubiquiti 99.4 2.9E-13 9.8E-18 113.0 9.0 74 109-184 3-76 (85)
75 4ajy_B Transcription elongatio 99.4 2.6E-13 9E-18 121.5 9.0 74 34-108 1-83 (118)
76 3m62_B UV excision repair prot 99.4 1.2E-13 4.1E-18 121.7 6.3 73 34-107 2-75 (106)
77 1wgh_A Ubiquitin-like 3, HCG-1 99.4 3.4E-13 1.2E-17 121.0 9.3 77 30-107 13-100 (116)
78 2bwf_A Ubiquitin-like protein 99.4 5.9E-13 2E-17 109.1 9.8 71 34-105 5-75 (77)
79 1se9_A Ubiquitin family; ubiqu 99.4 3.5E-13 1.2E-17 122.3 9.1 78 31-109 14-106 (126)
80 1ttn_A DC-UBP, dendritic cell- 99.4 3.4E-13 1.2E-17 118.7 8.8 77 108-186 22-98 (106)
81 2kan_A Uncharacterized protein 99.4 3.9E-13 1.3E-17 116.0 8.9 76 107-185 13-89 (94)
82 1yqb_A Ubiquilin 3; structural 99.4 3.9E-13 1.3E-17 117.3 8.8 78 30-109 19-97 (100)
83 1uel_A HHR23B, UV excision rep 99.4 4.4E-13 1.5E-17 115.5 9.0 73 34-107 1-77 (95)
84 1se9_A Ubiquitin family; ubiqu 99.4 3.2E-13 1.1E-17 122.6 8.2 81 105-185 12-104 (126)
85 2ojr_A Ubiquitin; lanthide-bin 99.4 4.9E-13 1.7E-17 118.6 9.2 78 31-109 33-111 (111)
86 1we6_A Splicing factor, putati 99.4 2.5E-13 8.5E-18 120.4 7.3 78 31-109 25-107 (111)
87 1wx8_A Riken cDNA 4931431F19; 99.4 1.8E-13 6.1E-18 117.8 6.1 78 31-109 15-92 (96)
88 1v2y_A 3300001G02RIK protein; 99.4 1.3E-13 4.3E-18 121.7 5.2 78 109-188 7-100 (105)
89 1yx5_B Ubiquitin; proteasome, 99.4 7.4E-13 2.5E-17 114.5 9.9 74 110-185 1-74 (98)
90 2fnj_B Transcription elongatio 99.4 3.6E-13 1.2E-17 121.0 7.9 72 110-183 1-80 (118)
91 4ajy_B Transcription elongatio 99.4 5.4E-13 1.8E-17 119.5 8.8 74 110-185 1-82 (118)
92 1v5o_A 1700011N24RIK protein; 99.4 6.1E-13 2.1E-17 116.3 8.8 79 31-109 5-88 (102)
93 2l7r_A Ubiquitin-like protein 99.4 4.5E-13 1.5E-17 115.2 7.8 74 107-184 17-90 (93)
94 1yqb_A Ubiquilin 3; structural 99.4 8.3E-13 2.8E-17 115.2 9.4 78 106-186 19-96 (100)
95 3vdz_A Ubiquitin-40S ribosomal 99.4 8.7E-13 3E-17 117.1 9.4 74 109-184 35-108 (111)
96 2klc_A Ubiquilin-1; ubiquitin- 99.4 1.3E-12 4.4E-17 114.1 10.3 77 31-108 23-99 (101)
97 3b1l_X E3 ubiquitin-protein li 99.1 3.2E-14 1.1E-18 116.8 0.0 74 110-185 1-74 (76)
98 2gow_A HCG-1 protein, ubiquiti 99.4 4.6E-13 1.6E-17 121.7 7.6 78 108-185 16-101 (125)
99 1wgd_A Homocysteine-responsive 99.4 6.6E-13 2.3E-17 113.8 8.1 76 108-185 6-87 (93)
100 1wju_A NEDD8 ultimate buster-1 99.4 7.4E-13 2.5E-17 115.7 8.2 65 119-185 29-93 (100)
101 2klc_A Ubiquilin-1; ubiquitin- 99.4 1.2E-12 4.2E-17 114.2 9.6 77 107-186 23-99 (101)
102 1wju_A NEDD8 ultimate buster-1 99.4 2.8E-13 9.7E-18 118.3 5.4 75 32-108 16-93 (100)
103 3l0w_B Monoubiquitinated proli 99.4 1.2E-12 4E-17 124.8 10.1 74 110-185 1-74 (169)
104 3u30_A Ubiquitin, linear DI-ub 99.4 7E-13 2.4E-17 125.9 8.5 78 31-109 94-172 (172)
105 1we6_A Splicing factor, putati 99.4 9E-13 3.1E-17 116.8 8.3 79 107-187 25-108 (111)
106 2gow_A HCG-1 protein, ubiquiti 99.4 8.8E-13 3E-17 119.8 8.3 77 31-108 15-102 (125)
107 1wx7_A Ubiquilin 3; ubiquitin- 99.4 1.4E-12 4.9E-17 114.5 9.3 77 31-109 15-92 (106)
108 2ojr_A Ubiquitin; lanthide-bin 99.4 2E-12 6.8E-17 114.7 10.1 76 108-185 34-109 (111)
109 4dbg_A Ranbp-type and C3HC4-ty 99.4 1.8E-12 6.1E-17 114.2 9.5 74 31-105 22-99 (105)
110 3u5e_m 60S ribosomal protein L 99.4 5.8E-14 2E-18 127.7 0.0 76 34-110 1-77 (128)
111 1wx7_A Ubiquilin 3; ubiquitin- 99.4 2.2E-12 7.5E-17 113.3 9.6 77 108-187 16-92 (106)
112 1j8c_A Ubiquitin-like protein 99.4 1.7E-12 5.8E-17 117.9 9.1 76 108-186 31-106 (125)
113 2kd0_A LRR repeats and ubiquit 99.3 2.9E-12 1E-16 108.4 9.7 75 30-105 9-83 (85)
114 1wx8_A Riken cDNA 4931431F19; 99.3 9.6E-13 3.3E-17 113.2 6.6 75 108-185 16-90 (96)
115 1wia_A Hypothetical ubiquitin- 99.3 1.8E-12 6.1E-17 111.4 8.0 77 108-189 6-83 (95)
116 2kdi_A Ubiquitin, vacuolar pro 99.3 3.1E-12 1.1E-16 114.2 9.7 79 107-187 7-85 (114)
117 1we7_A SF3A1 protein; structur 99.3 2.3E-12 8E-17 114.9 8.9 78 31-109 23-111 (115)
118 1v5t_A 8430435I17RIK protein; 99.3 1.8E-12 6.3E-17 110.7 7.6 76 31-107 5-84 (90)
119 2kdb_A Homocysteine-responsive 99.3 1.1E-12 3.8E-17 114.5 6.2 73 108-181 22-99 (99)
120 1v5o_A 1700011N24RIK protein; 99.3 2E-12 6.8E-17 113.0 7.8 80 108-189 6-90 (102)
121 3u5c_f 40S ribosomal protein S 99.3 1.2E-13 4.2E-18 129.5 0.0 75 34-109 1-76 (152)
122 1wgg_A Ubiquitin carboxyl-term 99.3 2.2E-12 7.6E-17 111.7 7.8 75 31-107 5-80 (96)
123 3b08_A Polyubiquitin-C, ubiqui 99.3 4.4E-12 1.5E-16 116.8 10.0 78 31-109 74-152 (152)
124 1wia_A Hypothetical ubiquitin- 99.3 3.2E-12 1.1E-16 109.8 8.3 75 30-108 4-80 (95)
125 4dbg_A Ranbp-type and C3HC4-ty 99.3 4.7E-12 1.6E-16 111.5 9.4 73 110-184 25-100 (105)
126 2kdb_A Homocysteine-responsive 99.3 1.4E-12 4.6E-17 113.9 5.8 72 31-103 21-99 (99)
127 1wxv_A BAG-family molecular ch 99.3 5.2E-12 1.8E-16 107.9 9.1 76 31-106 5-85 (92)
128 2dzm_A FAS-associated factor 1 99.3 2.9E-12 9.8E-17 112.1 7.2 74 31-106 6-82 (100)
129 3q3f_A Ribonuclease/ubiquitin 99.3 3.4E-12 1.2E-16 123.7 8.3 75 109-185 105-179 (189)
130 1we7_A SF3A1 protein; structur 99.3 7.5E-12 2.6E-16 111.6 9.5 69 117-187 43-112 (115)
131 1x1m_A Ubiquitin-like protein 99.3 6.7E-12 2.3E-16 110.6 9.1 75 109-185 12-101 (107)
132 2kjr_A CG11242; UBL, ubiquitin 99.3 1.3E-11 4.3E-16 107.0 10.1 77 27-103 9-93 (95)
133 1wgg_A Ubiquitin carboxyl-term 99.3 5.9E-12 2E-16 109.0 8.0 83 108-195 6-89 (96)
134 2kd0_A LRR repeats and ubiquit 99.3 9E-12 3.1E-16 105.3 8.9 71 111-183 13-83 (85)
135 3u5e_m 60S ribosomal protein L 99.3 3.6E-13 1.2E-17 122.5 0.0 74 110-185 1-74 (128)
136 3m63_B Ubiquitin domain-contai 99.3 1.7E-12 5.9E-17 113.4 3.8 72 33-105 28-99 (101)
137 1v86_A DNA segment, CHR 7, way 99.3 6.3E-12 2.1E-16 108.6 6.8 74 31-106 15-88 (95)
138 4b6w_A Tubulin-specific chaper 99.3 1.3E-11 4.3E-16 105.0 8.3 72 33-105 2-83 (86)
139 1v5t_A 8430435I17RIK protein; 99.2 1.6E-11 5.4E-16 104.9 8.1 75 108-185 6-84 (90)
140 2kj6_A Tubulin folding cofacto 99.2 2.6E-11 9E-16 105.4 9.5 75 30-104 11-94 (97)
141 3u5c_f 40S ribosomal protein S 99.2 9.2E-13 3.1E-17 123.5 0.0 72 110-183 1-72 (152)
142 1x1m_A Ubiquitin-like protein 99.2 1.2E-11 4.1E-16 109.0 6.8 76 31-107 10-101 (107)
143 1wxv_A BAG-family molecular ch 99.2 2.7E-11 9.2E-16 103.4 8.2 75 108-185 6-86 (92)
144 2daf_A FLJ35834 protein; hypot 99.2 2.6E-11 8.9E-16 108.2 8.4 88 31-119 13-102 (118)
145 2xzm_9 RPS31E; ribosome, trans 99.2 1.4E-12 4.7E-17 126.1 0.0 71 34-110 1-72 (189)
146 2daf_A FLJ35834 protein; hypot 99.2 6.8E-11 2.3E-15 105.6 9.4 73 110-184 16-89 (118)
147 4b6w_A Tubulin-specific chaper 99.2 3.9E-11 1.3E-15 102.0 7.2 67 117-185 12-85 (86)
148 2dzj_A Synaptic glycoprotein S 99.2 3.3E-11 1.1E-15 102.8 6.8 70 32-102 9-85 (88)
149 3ai5_A Yeast enhanced green fl 99.2 4E-11 1.4E-15 124.1 8.7 76 31-107 231-307 (307)
150 2dzm_A FAS-associated factor 1 99.2 4.1E-11 1.4E-15 104.7 7.0 74 109-185 8-83 (100)
151 2dzj_A Synaptic glycoprotein S 99.1 3.3E-11 1.1E-15 102.8 5.4 70 109-180 10-85 (88)
152 2kjr_A CG11242; UBL, ubiquitin 99.1 1.1E-10 3.8E-15 101.0 8.6 72 108-181 14-93 (95)
153 1oqy_A HHR23A, UV excision rep 99.1 4.3E-11 1.5E-15 126.9 7.0 79 29-108 3-86 (368)
154 1v86_A DNA segment, CHR 7, way 99.1 4.3E-11 1.5E-15 103.3 5.0 72 109-184 17-88 (95)
155 3ai5_A Yeast enhanced green fl 99.1 1.5E-10 5.2E-15 119.8 9.7 76 106-183 230-305 (307)
156 1oqy_A HHR23A, UV excision rep 99.1 1.1E-10 3.7E-15 123.8 8.5 74 108-183 6-83 (368)
157 2xzm_9 RPS31E; ribosome, trans 99.1 8.9E-12 3E-16 120.4 0.0 67 110-183 1-67 (189)
158 1t0y_A Tubulin folding cofacto 99.1 2.3E-10 7.7E-15 103.3 9.2 74 31-104 4-85 (122)
159 1v6e_A Cytoskeleton-associated 99.1 2E-10 6.7E-15 99.0 8.1 73 32-104 6-86 (95)
160 1wf9_A NPL4 family protein; be 99.1 1E-10 3.5E-15 103.1 5.9 74 31-105 5-94 (107)
161 2io1_B Small ubiquitin-related 99.1 3E-10 1E-14 98.1 8.2 78 31-109 5-83 (94)
162 1wf9_A NPL4 family protein; be 99.0 2E-10 6.9E-15 101.2 5.8 75 110-187 8-98 (107)
163 2kj6_A Tubulin folding cofacto 99.0 3.6E-10 1.2E-14 98.2 7.1 72 110-183 15-95 (97)
164 2io1_B Small ubiquitin-related 99.0 1.1E-09 3.6E-14 94.7 9.0 76 108-185 6-81 (94)
165 1v6e_A Cytoskeleton-associated 98.9 1.3E-09 4.4E-14 93.8 7.1 73 110-184 8-88 (95)
166 3shq_A UBLCP1; phosphatase, hy 98.9 1.4E-09 4.8E-14 113.4 7.3 75 31-106 3-80 (320)
167 2io0_B Small ubiquitin-related 98.9 3.3E-09 1.1E-13 91.1 8.3 78 31-109 3-81 (91)
168 1t0y_A Tubulin folding cofacto 98.9 3.7E-09 1.3E-13 95.3 8.4 76 108-185 5-88 (122)
169 2io0_B Small ubiquitin-related 98.9 7.1E-09 2.4E-13 89.0 9.5 77 108-186 4-80 (91)
170 1wm3_A Ubiquitin-like protein 98.9 5.2E-09 1.8E-13 85.7 8.1 70 110-181 2-71 (72)
171 2d07_B Ubiquitin-like protein 98.9 6.7E-09 2.3E-13 89.4 8.7 78 31-109 15-93 (93)
172 2kzr_A Ubiquitin thioesterase 98.8 2.7E-09 9.2E-14 90.1 5.1 71 34-105 1-77 (86)
173 2kzr_A Ubiquitin thioesterase 98.8 3.6E-09 1.2E-13 89.3 5.7 71 110-183 1-77 (86)
174 2eke_C Ubiquitin-like protein 98.8 2E-08 6.9E-13 88.6 10.2 78 30-109 28-106 (106)
175 3a4r_A Nfatc2-interacting prot 98.8 1.3E-08 4.5E-13 84.9 8.6 73 30-103 4-78 (79)
176 1wm3_A Ubiquitin-like protein 98.8 1.1E-08 3.6E-13 83.8 7.7 69 34-103 2-71 (72)
177 1wz0_A Ubiquitin-like protein 98.8 9.3E-09 3.2E-13 90.4 7.4 78 31-109 22-100 (104)
178 3a4r_A Nfatc2-interacting prot 98.8 1.7E-08 5.7E-13 84.2 8.5 72 108-181 6-78 (79)
179 2d07_B Ubiquitin-like protein 98.8 2E-08 7E-13 86.4 8.9 75 108-184 16-90 (93)
180 2k8h_A Small ubiquitin protein 98.7 1.1E-08 3.7E-13 90.9 6.7 79 31-110 24-103 (110)
181 3shq_A UBLCP1; phosphatase, hy 98.7 8E-09 2.7E-13 107.7 6.7 76 110-188 6-84 (320)
182 1wjn_A Tubulin-folding protein 98.7 2.2E-08 7.4E-13 86.4 7.4 75 31-105 7-92 (97)
183 2eke_C Ubiquitin-like protein 98.7 4.3E-08 1.5E-12 86.5 8.5 74 108-184 30-103 (106)
184 1wz0_A Ubiquitin-like protein 98.7 2.2E-08 7.4E-13 88.0 6.3 76 108-185 23-98 (104)
185 2k8h_A Small ubiquitin protein 98.6 2.9E-08 1E-12 88.1 5.6 78 107-186 24-101 (110)
186 1wjn_A Tubulin-folding protein 98.5 2.5E-07 8.4E-12 79.7 8.4 73 110-184 10-93 (97)
187 3kyd_D Small ubiquitin-related 98.3 3.8E-06 1.3E-10 74.9 9.7 75 108-184 39-113 (115)
188 1cja_A Protein (actin-fragmin 98.1 4.8E-06 1.6E-10 86.9 8.8 139 273-459 75-239 (342)
189 3pge_A SUMO-modified prolifera 98.1 8.4E-06 2.9E-10 79.4 9.7 78 31-109 27-104 (200)
190 3kyd_D Small ubiquitin-related 98.1 7.6E-06 2.6E-10 73.0 8.2 74 31-105 38-112 (115)
191 3tix_A Ubiquitin-like protein 98.0 8.7E-06 3E-10 78.4 7.6 79 31-110 55-133 (207)
192 3pge_A SUMO-modified prolifera 97.9 2.7E-05 9.3E-10 75.8 8.4 77 107-186 27-103 (200)
193 3tix_A Ubiquitin-like protein 97.8 3.3E-05 1.1E-09 74.4 7.1 77 108-187 56-132 (207)
194 4efo_A Serine/threonine-protei 97.7 5.2E-05 1.8E-09 65.2 6.2 60 34-93 13-75 (94)
195 3v7o_A Minor nucleoprotein VP3 97.7 5.5E-06 1.9E-10 80.7 0.1 79 31-110 19-97 (227)
196 2pjh_A Protein NPL4, nuclear p 97.6 3.8E-05 1.3E-09 64.1 3.8 71 108-181 3-78 (80)
197 2pjh_A Protein NPL4, nuclear p 97.6 4.7E-05 1.6E-09 63.5 4.0 71 32-103 3-78 (80)
198 3ivf_A Talin-1; FERM domain, c 97.5 0.0037 1.3E-07 65.7 18.9 120 33-157 3-132 (371)
199 3goe_A DNA repair protein RAD6 97.5 0.00064 2.2E-08 56.3 9.2 71 110-182 10-81 (82)
200 3v7o_A Minor nucleoprotein VP3 97.4 2.3E-05 8E-10 76.4 0.0 81 105-188 17-97 (227)
201 4efo_A Serine/threonine-protei 97.3 0.00087 3E-08 57.6 8.5 64 117-182 21-87 (94)
202 2jxx_A Nfatc2-interacting prot 97.2 0.0011 3.6E-08 57.4 8.4 72 108-181 24-96 (97)
203 3uf8_A Ubiquitin-like protein 97.1 0.002 6.8E-08 63.0 10.7 92 30-123 18-109 (209)
204 3uf8_A Ubiquitin-like protein 97.1 0.0018 6E-08 63.4 10.0 82 104-188 16-97 (209)
205 3goe_A DNA repair protein RAD6 97.1 0.0022 7.7E-08 53.0 8.3 70 34-104 10-81 (82)
206 2jxx_A Nfatc2-interacting prot 97.0 0.0028 9.5E-08 54.8 8.5 72 31-103 23-96 (97)
207 3ix6_A TS, tsase, thymidylate 96.9 0.00012 4.1E-09 77.0 -0.4 83 31-114 19-101 (360)
208 2l76_A Nfatc2-interacting prot 96.8 0.004 1.4E-07 53.5 8.3 73 110-185 22-94 (95)
209 2al3_A TUG long isoform; TUG U 96.8 0.0037 1.3E-07 53.2 7.7 76 107-184 7-82 (90)
210 2l76_A Nfatc2-interacting prot 96.7 0.0099 3.4E-07 51.0 10.0 74 30-104 18-91 (95)
211 3ix6_A TS, tsase, thymidylate 96.5 0.00045 1.5E-08 72.7 0.0 81 104-187 16-96 (360)
212 2kc2_A Talin-1, F1; FERM, adhe 96.3 0.0044 1.5E-07 56.1 5.6 70 111-181 13-120 (128)
213 3akj_A CTKA; protein kinase, t 96.2 0.00082 2.8E-08 70.0 0.3 46 413-458 139-186 (325)
214 4da1_A Protein phosphatase 1K, 96.2 0.00079 2.7E-08 71.5 0.0 84 31-115 28-111 (389)
215 2al3_A TUG long isoform; TUG U 95.7 0.015 5.2E-07 49.4 5.8 74 31-105 7-81 (90)
216 4da1_A Protein phosphatase 1K, 95.7 0.0018 6.1E-08 68.8 0.0 77 108-187 29-105 (389)
217 2bps_A YUKD protein; ubiquitin 95.6 0.02 6.7E-07 47.9 6.1 70 32-102 3-80 (81)
218 2kc2_A Talin-1, F1; FERM, adhe 95.4 0.0098 3.4E-07 53.9 3.7 70 35-105 13-122 (128)
219 2bps_A YUKD protein; ubiquitin 95.2 0.044 1.5E-06 45.7 6.9 64 117-180 14-80 (81)
220 2r2o_A Plexin-B1; effector dom 94.4 0.095 3.2E-06 47.8 7.3 78 31-108 22-131 (138)
221 2dzk_A UBX domain-containing p 94.1 0.22 7.7E-06 43.5 9.0 74 31-104 11-89 (109)
222 3qx1_A FAS-associated factor 1 93.7 0.23 7.8E-06 41.1 7.9 73 31-104 5-82 (84)
223 4e71_A Plexin-B2, MM1; transme 93.4 0.15 5.1E-06 44.9 6.6 75 31-105 9-110 (111)
224 3qx1_A FAS-associated factor 1 92.7 0.31 1E-05 40.3 7.2 69 110-181 8-81 (84)
225 2x6h_A GH13170P, VPS34, phosph 91.4 1.3 4.5E-05 50.4 12.7 140 414-582 537-679 (696)
226 1wj4_A KIAA0794 protein; UBX d 90.7 0.79 2.7E-05 40.9 8.2 72 31-103 41-117 (124)
227 4e74_A Plexin-A4; RBD, structu 89.7 0.92 3.1E-05 40.3 7.5 76 31-106 11-115 (117)
228 3ls8_A Phosphatidylinositol 3- 89.1 1.5 5.1E-05 49.3 10.4 141 414-583 463-606 (614)
229 3h6n_A Plexin-D1; structural g 89.0 1.1 3.7E-05 40.3 7.5 75 33-107 4-106 (127)
230 2daj_A KIAA0977 protein, COBL- 88.7 1.1 3.8E-05 37.6 6.8 66 30-96 7-76 (91)
231 2cr5_A Reproduction 8; UBX dom 88.7 1.3 4.4E-05 38.5 7.7 73 31-104 21-97 (109)
232 2dzk_A UBX domain-containing p 88.5 1.1 3.9E-05 38.9 7.2 71 110-182 14-89 (109)
233 4a3p_A Ubiquitin carboxyl-term 88.2 1.6 5.5E-05 42.4 8.9 66 44-109 141-212 (217)
234 3jyu_A Ubiquitin carboxyl-term 87.9 1.3 4.5E-05 43.5 8.1 66 44-109 153-224 (231)
235 2wxf_A Phosphatidylinositol-4, 87.8 2 6.7E-05 50.7 10.8 143 415-581 775-921 (940)
236 4e71_A Plexin-B2, MM1; transme 87.6 2 6.9E-05 37.7 8.2 64 119-182 23-109 (111)
237 1wj4_A KIAA0794 protein; UBX d 87.1 1.3 4.6E-05 39.4 7.0 70 109-181 43-117 (124)
238 2r2o_A Plexin-B1; effector dom 86.4 2.1 7.2E-05 39.0 7.8 66 120-185 41-130 (138)
239 3ivf_A Talin-1; FERM domain, c 85.3 2 7E-05 44.7 8.4 64 119-182 12-83 (371)
240 2ylm_A Ubiquitin carboxyl-term 84.6 8.1 0.00028 42.5 13.1 115 31-146 337-477 (530)
241 1s3s_G P47 protein; AAA ATPase 84.5 1.1 3.8E-05 40.1 5.1 70 31-100 50-123 (127)
242 3hhm_A Phosphatidylinositol-4, 84.3 3.1 0.00011 49.6 10.1 143 415-581 924-1072(1091)
243 2y3a_A Phosphatidylinositol-4, 83.3 6.4 0.00022 47.0 12.2 141 416-580 928-1072(1092)
244 2juo_A GA-binding protein alph 82.2 4.4 0.00015 33.8 7.3 60 122-183 5-64 (89)
245 3h6n_A Plexin-D1; structural g 81.3 5.9 0.0002 35.5 8.4 68 118-185 15-106 (127)
246 2cr5_A Reproduction 8; UBX dom 81.2 3.4 0.00011 35.8 6.7 70 110-182 24-97 (109)
247 1s3s_G P47 protein; AAA ATPase 81.1 3 0.0001 37.2 6.5 68 110-179 53-124 (127)
248 1ryj_A Unknown; beta/alpha pro 80.7 9.6 0.00033 30.1 8.8 67 32-108 3-69 (70)
249 1oey_A P67-PHOX, neutrophil cy 80.4 4.8 0.00017 33.5 7.0 49 31-80 3-51 (83)
250 3jyu_A Ubiquitin carboxyl-term 79.5 6.3 0.00022 38.6 8.9 62 121-184 153-221 (231)
251 1e7u_A Phosphatidylinositol 3- 76.8 8 0.00027 45.6 10.1 143 415-581 791-937 (961)
252 3hm6_X Plexin-B1; structural g 76.7 4.2 0.00014 45.5 7.2 78 31-108 255-364 (644)
253 2daj_A KIAA0977 protein, COBL- 76.3 7.5 0.00026 32.6 6.9 56 117-174 18-76 (91)
254 2l32_A Small archaeal modifier 76.3 4.4 0.00015 32.8 5.5 65 34-109 1-66 (74)
255 4e74_A Plexin-A4; RBD, structu 76.2 7.2 0.00025 34.5 7.3 67 119-185 26-116 (117)
256 3ig3_A Plxna3 protein; plexin 76.0 5.4 0.00018 44.5 7.8 77 31-107 231-336 (627)
257 2juo_A GA-binding protein alph 75.5 5.5 0.00019 33.3 5.9 61 44-105 4-64 (89)
258 4a3p_A Ubiquitin carboxyl-term 74.2 8.1 0.00028 37.4 7.9 62 121-184 141-209 (217)
259 3kuz_A Plexin-C1; structural g 72.6 6.5 0.00022 35.2 6.1 74 31-104 17-125 (126)
260 2ylm_A Ubiquitin carboxyl-term 71.7 24 0.00082 38.7 11.8 123 31-155 128-286 (530)
261 1vd2_A Protein kinase C, IOTA 71.3 19 0.00064 30.3 8.4 50 31-80 4-54 (89)
262 1vjk_A Molybdopterin convertin 70.7 17 0.00057 30.5 8.1 72 31-108 7-97 (98)
263 1oey_A P67-PHOX, neutrophil cy 62.5 10 0.00036 31.5 5.0 45 113-159 7-51 (83)
264 2cu3_A Unknown function protei 61.6 21 0.0007 27.5 6.4 62 38-108 2-63 (64)
265 3kuz_A Plexin-C1; structural g 61.5 32 0.0011 30.7 8.3 62 120-181 39-124 (126)
266 1h4r_A Merlin; FERM, neurofibr 61.4 30 0.001 34.7 9.3 74 109-184 22-99 (314)
267 1tyg_B YJBS; alpha beta barrel 60.7 16 0.00054 30.5 5.9 68 31-108 18-86 (87)
268 1ip9_A BEM1 protein; ubiquitin 58.6 32 0.0011 28.7 7.2 38 32-69 11-48 (85)
269 1ef1_A Moesin; membrane, FERM 58.6 27 0.00092 34.6 8.3 72 110-183 2-78 (294)
270 1ryj_A Unknown; beta/alpha pro 56.6 61 0.0021 25.3 8.5 61 109-181 4-64 (70)
271 3tpd_A Serine/threonine-protei 56.3 1.8 6.1E-05 46.4 -0.9 38 413-450 293-330 (440)
272 2kvr_A Ubiquitin carboxyl-term 53.8 12 0.0004 33.6 4.2 34 45-78 58-91 (130)
273 3rpf_C Molybdopterin convertin 53.7 23 0.0008 27.9 5.6 58 46-109 15-74 (74)
274 1f0z_A THis protein; ubiquitin 51.9 22 0.00074 27.5 5.0 63 38-108 3-65 (66)
275 1vjk_A Molybdopterin convertin 48.7 73 0.0025 26.4 8.2 57 120-181 27-92 (98)
276 3ig3_A Plxna3 protein; plexin 47.2 83 0.0028 35.2 10.3 67 119-185 246-336 (627)
277 3po0_A Small archaeal modifier 47.0 47 0.0016 26.8 6.6 61 43-109 18-89 (89)
278 2l32_A Small archaeal modifier 45.4 31 0.0011 27.6 5.1 60 110-181 1-60 (74)
279 2i1j_A Moesin; FERM, coiled-co 44.9 52 0.0018 36.4 8.5 72 110-183 5-81 (575)
280 3hm6_X Plexin-B1; structural g 44.0 50 0.0017 36.9 8.0 65 120-184 274-362 (644)
281 1wgk_A Riken cDNA 2900073H19 p 43.5 69 0.0024 27.8 7.4 77 31-109 9-108 (114)
282 2kl0_A Putative thiamin biosyn 43.0 24 0.00084 28.1 4.1 63 38-109 3-65 (73)
283 4eut_A Serine/threonine-protei 42.5 57 0.0019 33.3 8.0 59 35-93 312-373 (396)
284 2k5p_A THis protein, thiamine- 41.1 30 0.001 28.0 4.4 66 38-109 3-69 (78)
285 1q1o_A Cell division control p 40.9 42 0.0014 28.7 5.4 38 32-69 4-49 (98)
286 1wgr_A Growth factor receptor- 40.3 57 0.0019 27.9 6.2 42 31-72 7-49 (100)
287 2kmc_A Fermitin family homolog 40.0 1.4E+02 0.0047 25.6 8.4 73 110-182 20-98 (102)
288 3qij_A Protein 4.1; cytoskelet 39.4 55 0.0019 32.7 7.1 62 109-171 17-83 (296)
289 3dwg_C 9.5 kDa culture filtrat 39.2 67 0.0023 26.2 6.4 61 46-109 20-93 (93)
290 2qjl_A URM1, ubiquitin-related 39.2 1.4E+02 0.0048 24.7 8.5 63 43-109 20-99 (99)
291 2kmm_A Guanosine-3',5'-BIS(dip 38.9 51 0.0017 25.4 5.4 65 110-185 1-65 (73)
292 2kvr_A Ubiquitin carboxyl-term 37.0 23 0.00077 31.7 3.3 33 122-156 58-90 (130)
293 2kmc_A Fermitin family homolog 34.0 1.7E+02 0.0057 25.1 7.9 74 31-104 15-98 (102)
294 2cu1_A Mitogen-activated prote 33.4 1.4E+02 0.0048 25.6 7.4 49 31-82 6-54 (103)
295 1vd2_A Protein kinase C, IOTA 31.7 94 0.0032 26.0 6.1 48 112-160 7-55 (89)
296 3rpf_C Molybdopterin convertin 30.3 1.4E+02 0.0047 23.3 6.7 54 123-181 15-68 (74)
297 1h4r_A Merlin; FERM, neurofibr 29.2 1.8E+02 0.0062 28.9 9.0 72 31-104 20-97 (314)
298 1ef1_A Moesin; membrane, FERM 28.7 2.9E+02 0.0098 27.0 10.3 70 33-104 1-77 (294)
299 3po0_A Small archaeal modifier 28.2 1.4E+02 0.0047 23.9 6.5 57 120-181 18-83 (89)
300 3qa8_A MGC80376 protein; kinas 27.8 42 0.0014 37.9 4.3 52 40-92 319-371 (676)
301 2c60_A Human mitogen-activated 27.4 2.2E+02 0.0074 24.6 7.5 60 21-83 19-78 (111)
302 4eut_A Serine/threonine-protei 25.6 1.5E+02 0.005 30.1 7.7 51 119-171 321-373 (396)
303 3ge3_C Toluene-4-monooxygenase 25.3 1.7E+02 0.0059 24.2 6.3 59 44-103 16-81 (84)
304 1b0n_B Protein (SINI protein); 22.2 43 0.0015 25.8 2.1 24 516-539 16-39 (57)
305 2g1e_A Hypothetical protein TA 21.4 1.9E+02 0.0067 22.9 6.2 60 47-108 19-89 (90)
306 3qij_A Protein 4.1; cytoskelet 20.7 1.6E+02 0.0055 29.3 6.6 62 31-93 15-83 (296)
307 1wgr_A Growth factor receptor- 20.5 1.1E+02 0.0036 26.2 4.4 60 110-170 10-75 (100)
308 2inc_C TOUB protein; DIIRON, 4 20.4 3.7E+02 0.012 22.2 7.8 60 44-104 14-81 (83)
309 2l52_A Methanosarcina acetivor 20.2 2.3E+02 0.0079 23.4 6.5 71 34-109 4-99 (99)
310 1t3q_A Quinoline 2-oxidoreduct 20.1 1.1E+02 0.0037 28.2 4.8 31 31-61 7-37 (168)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.97 E-value=9.1e-31 Score=249.67 Aligned_cols=152 Identities=34% Similarity=0.528 Sum_probs=145.3
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
+...|+|+| +++|+++.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|||+++++|+|++++.+
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeeeeecccc
Confidence 468899999 799999999999999999999999999999999999999999997 899999999999999999999999
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
+|+|+|++.+|+++.++|++++||.+||++|+.+.|+| +++|+|+|+|+.|+|+++|++|+|+++++|||++|-
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rl 169 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 169 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC--
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCC--ceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEec
Confidence 99999999999999999999999999999999999988 999999999999999999999999999999998873
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.97 E-value=2.5e-30 Score=243.08 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=144.3
Q ss_pred CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE-E-cCcccccCCccccccCcccccceeEEee-ecc
Q 007773 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-F-EGRELARSNSRVRDYGLADGNVLHLVLR-LSD 108 (590)
Q Consensus 33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv-f-~Gk~L~~D~~tL~dygI~~gstL~Lvlr-Lsd 108 (590)
.|+|+| +++|++++++|++++||.+||.+|+.+.|+|+++|+|+ | +|+.|. |+.+|++|+|++|++|||+++ +++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~-d~~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-TTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCC-CCCCHHHcCCCCCCEEEEEccCCCC
Confidence 489999 79999999999999999999999999999999999999 9 799997 999999999999999999999 699
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
.|+|+|++.+|+++.++|++++||.+||++|+.+.|+| +++|+|+|+|+.|+|+++|++|+|+++++|||++|..
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC--HHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecC
Confidence 99999999999999999999999999999999999988 9999999999999999999999999999999998843
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.96 E-value=2.3e-28 Score=226.43 Aligned_cols=149 Identities=34% Similarity=0.537 Sum_probs=144.5
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~I 112 (590)
|+|+| +.+|++++++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||++++++|++.+..++|+|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~~~~~~~i 79 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGMQI 79 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECc-CcccHHHhccCCCCeeEEEeecccccce
Confidence 89999 789999999999999999999999999999999999999999997 8999999999999999999999999999
Q ss_pred eeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 113 ~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
+|++.+|+.+.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+.+|++|+++++++|+|++|..
T Consensus 80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 9999999999999999999999999999999988 9999999999999999999999999999999998754
No 4
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.5e-17 Score=148.73 Aligned_cols=103 Identities=30% Similarity=0.488 Sum_probs=98.2
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
....+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||+++++|+|++++.++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 46789999 899999999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred ccceee---eccceeeEEEeecCCcHHH
Q 007773 110 QAITVT---TVCGKVFEFHVERGRNVGY 134 (590)
Q Consensus 110 m~I~Vk---t~~Gk~~~i~Vd~s~TV~~ 134 (590)
+.++++ +.+|++++++|++++||+.
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 86 SMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ceeeccccccccCceEEEEeccccccCC
Confidence 999999 7889999999999999863
No 5
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=131.03 Aligned_cols=88 Identities=25% Similarity=0.282 Sum_probs=71.8
Q ss_pred CcccccceeEEeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC
Q 007773 93 GLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK 172 (590)
Q Consensus 93 gI~~gstL~LvlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I 172 (590)
|..++++++++++.+..|+|+||+.+|+.+.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+.+|++|++
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i 78 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV 78 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCcHHHcCC
Confidence 345688999999999999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred CCCCEEEEEee
Q 007773 173 RNEAVIHLLVR 183 (590)
Q Consensus 173 ~~gsvI~L~vr 183 (590)
+|++|||++|
T Consensus 79 -~g~~i~lv~R 88 (88)
T 4eew_A 79 -GGKVIHLVER 88 (88)
T ss_dssp -TTEEEEEEEC
T ss_pred -CCcEEEEEEC
Confidence 8999999876
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.62 E-value=9.3e-16 Score=127.18 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=72.8
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
+..|+|+| +++|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++++.|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCC
Confidence 36799999 789999999999999999999999999999999999999999997 899999999999999999999864
No 7
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.60 E-value=1.8e-15 Score=130.95 Aligned_cols=91 Identities=31% Similarity=0.509 Sum_probs=72.8
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~I 112 (590)
|+|+| +.+|+++.++|++++||.+||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|++++.++.++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 89999 778999999999999999999999999999999999999999997 8999999999999999999999999999
Q ss_pred eeeeccceeeEEE
Q 007773 113 TVTTVCGKVFEFH 125 (590)
Q Consensus 113 ~Vkt~~Gk~~~i~ 125 (590)
+.+|.+|+.-.++
T Consensus 80 ~~~~v~~~~~~~~ 92 (98)
T 1yx5_B 80 NSSSVDKLAAALE 92 (98)
T ss_dssp -------------
T ss_pred ccccCCCchhhhh
Confidence 9999998776554
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.60 E-value=2.1e-15 Score=129.73 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=70.2
Q ss_pred EEeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 102 LvlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
|+...+..|+|+||+.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|++|+|..+|+||+|++|++|+|.
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 455566779999999999999999999999999999999999998 999999999999999999999999999999985
No 9
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.60 E-value=2.2e-15 Score=127.04 Aligned_cols=82 Identities=29% Similarity=0.526 Sum_probs=76.3
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 27 ~~~~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
++.+..+|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|.+|+|+++++|||+++
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBGGGGTCCTTCEEEECCC
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 333578899999 689999999999999999999999999999999999999999997 899999999999999999999
Q ss_pred eccc
Q 007773 106 LSDL 109 (590)
Q Consensus 106 Lsd~ 109 (590)
+.++
T Consensus 85 l~GG 88 (88)
T 3dbh_I 85 LRGG 88 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8864
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.58 E-value=2.5e-15 Score=129.29 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=68.8
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv 103 (590)
..-|+|+| ++.|++++++|+|+|||.+||++|++++|+|+++|+|+|+|++|. |+.+|++|+|++|++|+|.
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~Lk-D~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEcc-CcCCHHHcCCCCCCEEEEE
Confidence 56799999 789999999999999999999999999999999999999999998 8999999999999999986
No 11
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.58 E-value=4.3e-15 Score=126.90 Aligned_cols=77 Identities=36% Similarity=0.638 Sum_probs=73.2
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
+...|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+|++|++
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcCcHHHCCCCCCCEEEEEEecC
Confidence 468899999 789999999999999999999999999999999999999999997 89999999999999999999874
No 12
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.58 E-value=5.5e-15 Score=122.52 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=72.1
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
..|+|+||+.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||++|-
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC--HHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 469999999999999999999999999999999999998 999999999999999999999999999999999873
No 13
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.58 E-value=3.3e-15 Score=127.12 Aligned_cols=77 Identities=27% Similarity=0.539 Sum_probs=71.2
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA 111 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~ 111 (590)
|+|+| +++|++++++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.++..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 79999 789999999999999999999999999999999999999999997 899999999999999999999998753
No 14
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.8e-15 Score=128.08 Aligned_cols=79 Identities=34% Similarity=0.594 Sum_probs=73.3
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
.+..|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.+
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBSGGGTCCTTEEEEEECBCSC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCC
Confidence 478899999 789999999999999999999999999999999999999999997 899999999999999999999887
Q ss_pred c
Q 007773 109 L 109 (590)
Q Consensus 109 ~ 109 (590)
+
T Consensus 98 G 98 (98)
T 4hcn_B 98 G 98 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.55 E-value=6.7e-15 Score=121.97 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=72.8
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
+.|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|++++++.|+
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~-d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 4699999 789999999999999999999999999999999999999999998 8999999999999999999998764
No 16
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.4e-14 Score=119.53 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=71.4
Q ss_pred ccccceeeeccceee-EEE-eecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 108 DLQAITVTTVCGKVF-EFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~-~i~-Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|.|+|+|++.+|+++ .++ |++++||.+||++|+++.|++ +++|+|+|+|+.|+|+++|++|+++++++|||++|.+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 469999999999985 999 999999999999999999988 9999999999999999999999999999999998754
No 17
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.53 E-value=1.9e-14 Score=122.24 Aligned_cols=77 Identities=23% Similarity=0.423 Sum_probs=72.2
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
+..|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|.+|+| +|++|||+++.+..
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECC-CCCCHHHcCC-CCcEEEEEecCCCC
Confidence 46899999 889999999999999999999999999999999999999999997 8999999999 89999999987653
No 18
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.53 E-value=1.4e-14 Score=122.50 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=70.8
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc-cccCCccccccCcccccceeEEee
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-LARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
..-|+|+| +++|++++++|++++||++||.+|++++|+|+++|+|+|+|+. |. |+.+|++|||++|++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~-D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR-EDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC-SSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC-CcCCHHHcCCCCCCEEEEEEc
Confidence 46799999 8999999999999999999999999999999999999999999 97 899999999999999999875
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=2.4e-14 Score=120.63 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=75.0
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEcc-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence 47899999 788999999999999999999999999999999999999999997 8999999999999999999999876
Q ss_pred c
Q 007773 110 Q 110 (590)
Q Consensus 110 m 110 (590)
.
T Consensus 84 ~ 84 (87)
T 1wh3_A 84 P 84 (87)
T ss_dssp S
T ss_pred C
Confidence 3
No 20
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.53 E-value=2.1e-14 Score=122.01 Aligned_cols=79 Identities=27% Similarity=0.293 Sum_probs=72.3
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k 187 (590)
..|+|+||+.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+++|++|+| ++++|||+++.+..
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 458999999999999999999999999999999999988 999999999999999999999999 89999999986654
Q ss_pred cc
Q 007773 188 VR 189 (590)
Q Consensus 188 v~ 189 (590)
.+
T Consensus 81 ~~ 82 (90)
T 4dwf_A 81 TH 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 33
No 21
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.53 E-value=1.7e-14 Score=117.65 Aligned_cols=75 Identities=28% Similarity=0.556 Sum_probs=70.2
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+|+| +.+|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|++++++.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 78999 678999999999999999999999999999999999999999997 8999999999999999999998764
No 22
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=118.28 Aligned_cols=76 Identities=22% Similarity=0.453 Sum_probs=72.1
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
+...|+|+| +.+|+++.++|.+++||++||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++||+++++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALA-DGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECC-TTSBGGGGTCCSSBCCEEECCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence 467899999 788999999999999999999999999999999999999999997 8999999999999999999876
No 23
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=1.9e-14 Score=118.78 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=69.9
Q ss_pred CCEEEEE-EeCCeEE-EEE-ecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 32 DSILIFL-SVGGSVI-PMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~-~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
+.|+|+| +++|+++ .++ |++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||+++++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~-d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence 3699999 7889885 999 99999999999999999999999999999999997 89999999999999999998863
No 24
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.53 E-value=2.6e-14 Score=123.43 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCC-ccccccCcccccceeEEe
Q 007773 27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 27 ~~~~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstL~Lvl 104 (590)
++.+...|+|+| +++| ++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+ .+|++|||+++++|+|++
T Consensus 9 ~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv~ 86 (94)
T 2kan_A 9 SHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVFL 86 (94)
T ss_dssp SCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEEE
T ss_pred cccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEEE
Confidence 344578899999 6666 8999999999999999999999999999999999999997 77 999999999999999999
Q ss_pred eeccc
Q 007773 105 RLSDL 109 (590)
Q Consensus 105 rLsd~ 109 (590)
+++++
T Consensus 87 r~~gg 91 (94)
T 2kan_A 87 KSINR 91 (94)
T ss_dssp CCCSS
T ss_pred eCCCC
Confidence 98875
No 25
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=1.7e-14 Score=122.01 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=71.0
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEE-cCCCCcccccCCCCCCEEEEEeec
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-LEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~-LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
-|.|+|++.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+. |+|+++|++|+|+++++|+|++++
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 48999999999999999999999999999999999988 999999999999 999999999999999999998763
No 26
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.52 E-value=1.4e-14 Score=125.53 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=74.3
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|+|+| +++|+++.++|.+++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.|+
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcC-CCCCHHHCCCCCCCEEEEEEecCCC
Confidence 56799999 789999999999999999999999999999999999999999997 8999999999999999999998764
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=1.4e-14 Score=121.09 Aligned_cols=77 Identities=30% Similarity=0.506 Sum_probs=70.9
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
..|+|+| +++|+++.++|++++||.+||.+|+++.++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECC-TTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence 4799999 688999999999999999999999999999999999999999997 8999999999999999999999765
No 28
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=3.5e-14 Score=120.24 Aligned_cols=79 Identities=16% Similarity=0.341 Sum_probs=74.2
Q ss_pred CCCEEEEE-EeCC-eEEEE-EecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 31 NDSILIFL-SVGG-SVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 31 ~~sM~I~V-tl~G-~t~~l-~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
...|+|+| +++| +++.+ +|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEECCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeCC
Confidence 57899999 7888 79999 599999999999999999999999999999999997 89999999999999999999998
Q ss_pred ccc
Q 007773 108 DLQ 110 (590)
Q Consensus 108 d~m 110 (590)
++.
T Consensus 84 gG~ 86 (89)
T 1wy8_A 84 SGP 86 (89)
T ss_dssp CSS
T ss_pred CCC
Confidence 763
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=123.34 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=71.0
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
+..|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++.++
T Consensus 2 ~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC-TTSBHHHHHCSTTCEEEEEEC----
T ss_pred CccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 46799999 788999999999999999999999999999999999999999997 8999999999999999999998765
No 30
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=1.7e-14 Score=126.12 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=68.8
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
...|+|+| ++.|++++++|.+++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|.+|+|+++++|||+.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~-D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEe
Confidence 34599999 788999999999999999999999999999999999999999997 89999999999999999864
No 31
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=2.4e-14 Score=119.56 Aligned_cols=77 Identities=32% Similarity=0.563 Sum_probs=72.9
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
..|+|+| +++|+++.++|++++||.+||.+|+++.++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEECcCC
Confidence 5799999 788999999999999999999999999999999999999999998 8999999999999999999998765
No 32
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.52 E-value=2.4e-14 Score=121.76 Aligned_cols=74 Identities=26% Similarity=0.380 Sum_probs=71.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+|++.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~ 74 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECC
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999998843
No 33
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.8e-14 Score=127.07 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=70.4
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCCcc
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVR 189 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~kv~ 189 (590)
|+|+||+.+|+.+.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++...+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~~ 79 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKSTK 79 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCCC
Confidence 7899999999999999999999999999999999988 99999999999999999999999999999999999776544
Q ss_pred C
Q 007773 190 A 190 (590)
Q Consensus 190 ~ 190 (590)
+
T Consensus 80 ~ 80 (106)
T 3m62_B 80 T 80 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 34
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.51 E-value=3.1e-14 Score=122.30 Aligned_cols=79 Identities=34% Similarity=0.623 Sum_probs=72.1
Q ss_pred CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccccc
Q 007773 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA 111 (590)
Q Consensus 33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~ 111 (590)
.|+|+| +++|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|.+|+|+++++|||++++.++..
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 389999 789999999999999999999999999999999999999999997 899999999999999999999998865
Q ss_pred c
Q 007773 112 I 112 (590)
Q Consensus 112 I 112 (590)
.
T Consensus 80 ~ 80 (96)
T 3k9o_B 80 L 80 (96)
T ss_dssp -
T ss_pred c
Confidence 4
No 35
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=120.05 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=69.5
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
+..|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|.+||| +|++|||++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCcHHHcCC-CCcEEEEEEC
Confidence 56799999 789999999999999999999999999999999999999999998 8999999999 8999999875
No 36
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.51 E-value=3e-14 Score=135.82 Aligned_cols=83 Identities=35% Similarity=0.578 Sum_probs=76.3
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~I 112 (590)
|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||+++++++...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~gstI~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGGE 79 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcccc-CcCcHHHcCCCCCCEEEEEEEecccccc
Confidence 89999 889999999999999999999999999999999999999999997 8999999999999999999999998877
Q ss_pred eeeec
Q 007773 113 TVTTV 117 (590)
Q Consensus 113 ~Vkt~ 117 (590)
.|+..
T Consensus 80 ~vkfs 84 (169)
T 3l0w_B 80 TIKFV 84 (169)
T ss_dssp CEEEE
T ss_pred ccccc
Confidence 77653
No 37
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.51 E-value=3.8e-14 Score=115.52 Aligned_cols=75 Identities=36% Similarity=0.621 Sum_probs=71.5
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+|+| +.+|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||.+|++|++++++.|+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 79999 778999999999999999999999999999999999999999997 8999999999999999999998764
No 38
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.51 E-value=5.3e-14 Score=117.89 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=70.8
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHh---cCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~---~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
+..|+|+|++.+|+.+.++|++++||.+||++|+.. .|++ +++|+|+|+|+.|+|+++|++|+++++++|+|+++
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 456999999999999999999999999999999998 7887 99999999999999999999999999999999987
Q ss_pred cC
Q 007773 184 KS 185 (590)
Q Consensus 184 ks 185 (590)
++
T Consensus 81 ~~ 82 (85)
T 2wyq_A 81 KT 82 (85)
T ss_dssp --
T ss_pred CC
Confidence 65
No 39
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=2e-14 Score=122.69 Aligned_cols=74 Identities=14% Similarity=0.324 Sum_probs=69.6
Q ss_pred ccceeeeccceeeEEEee--cCCcHHHHHHHH-HHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-CCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVE--RGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd--~s~TV~~LK~kI-~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I-~~gsvI~L~vrks 185 (590)
|+|+|||.+|++++++|+ +++||.+||++| +.+.|+| +++|+|+|+|+.|+|+.+|++|+| +++++|++++++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSS--STTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999999877 999999999999 9999988 999999999999999999999999 7999999988754
No 40
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=3.5e-14 Score=120.77 Aligned_cols=77 Identities=30% Similarity=0.582 Sum_probs=68.7
Q ss_pred CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
..|+|+| +++|+++.++|++++||++||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|||+++++|+|++++.++
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBSGGGTCCTTCEEEEEC-----
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4699999 899999999999999999999999999999999999999999997 8999999999999999999998875
No 41
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=8.9e-14 Score=119.89 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=72.5
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHh---cCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~---~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
|+|+|++.+|+.+.++|++++||.+||++|+.. .|++ +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 7787 99999999999999999999999999999999998665
Q ss_pred Ccc
Q 007773 187 KVR 189 (590)
Q Consensus 187 kv~ 189 (590)
..+
T Consensus 79 ~~~ 81 (95)
T 1uel_A 79 AVS 81 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 42
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.50 E-value=4.2e-14 Score=123.32 Aligned_cols=77 Identities=13% Similarity=0.308 Sum_probs=70.0
Q ss_pred cccccceeeeccceeeEEE--eecCCcHHHHHHHH-HHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-CCCCEEEEEe
Q 007773 107 SDLQAITVTTVCGKVFEFH--VERGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLV 182 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~--Vd~s~TV~~LK~kI-~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I-~~gsvI~L~v 182 (590)
...|+|+|||.+|++|+++ |++++||.+||++| ++..|++ +++|+|+|+|+.|+|..+|++|+| +++++|+|++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 4569999999999988875 55999999999999 8888887 999999999999999999999999 9999999999
Q ss_pred ecC
Q 007773 183 RKS 185 (590)
Q Consensus 183 rks 185 (590)
+++
T Consensus 95 skp 97 (98)
T 4a20_A 95 KPN 97 (98)
T ss_dssp CCC
T ss_pred eCC
Confidence 875
No 43
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=122.77 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=70.7
Q ss_pred CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
....|+|+|+. |+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.|+
T Consensus 16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence 36779999955 899999999999999999999999999999999999999997 8999999999999999999998874
No 44
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=2.6e-14 Score=124.90 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=68.8
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
.|+|+||+.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|++|+|+.+|++|+|+++++|+|+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 38999999999999999999999999999999999998 999999999999999999999999999999986
No 45
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.50 E-value=5e-14 Score=120.26 Aligned_cols=75 Identities=31% Similarity=0.421 Sum_probs=71.7
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
...|+|+||+.+|+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|+|++|++|+|++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 3459999999999999999999999999999999999988 99999999999999999999999999999999987
No 46
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=1.9e-14 Score=126.90 Aligned_cols=79 Identities=20% Similarity=0.449 Sum_probs=72.9
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCcc---------------ceEEEEcCcccccCCccccccCc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---------------KQKLVFEGRELARSNSRVRDYGL 94 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~---------------~QrLvf~Gk~L~~D~~tL~dygI 94 (590)
...|+|+| +++|++++++|.+++||++||++|+++.|+|+. +|+|+|+|+.|.+|+.+|++|||
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 46699999 899999999999999999999999999999873 57999999999757799999999
Q ss_pred ccccceeEEeeeccc
Q 007773 95 ADGNVLHLVLRLSDL 109 (590)
Q Consensus 95 ~~gstL~LvlrLsd~ 109 (590)
++|++||+++++++.
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999999764
No 47
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.49 E-value=5.1e-14 Score=116.64 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=71.5
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
.|+|+|++.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|++++++|+++++++|+++++..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 48899999999999999999999999999999999998 9999999999999999999999999999999998743
No 48
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.48 E-value=6.8e-14 Score=124.30 Aligned_cols=78 Identities=35% Similarity=0.576 Sum_probs=73.5
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+.+|+|+|+|+.|. |+.+|++|+|+++++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence 45799999 689999999999999999999999999999999999999999998 8999999999999999999998864
No 49
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.48 E-value=3.6e-14 Score=137.52 Aligned_cols=82 Identities=33% Similarity=0.529 Sum_probs=79.2
Q ss_pred CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccccc
Q 007773 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA 111 (590)
Q Consensus 33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~ 111 (590)
.|+|+| +++|++++++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.++..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGQ 183 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECC-CCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence 499999 789999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred ceee
Q 007773 112 ITVT 115 (590)
Q Consensus 112 I~Vk 115 (590)
++||
T Consensus 184 ~fvk 187 (189)
T 3q3f_A 184 TFTK 187 (189)
T ss_dssp CCCC
T ss_pred ceEe
Confidence 9986
No 50
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=1.1e-13 Score=116.45 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=71.8
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
..|+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|+|+++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC--hHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 469999999999999999999999999999999999988 999999999999999999999999999999999883
No 51
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.47 E-value=1.2e-13 Score=112.49 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=70.2
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
|+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|++++|.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999999874
No 52
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.47 E-value=1.1e-13 Score=118.77 Aligned_cols=77 Identities=31% Similarity=0.404 Sum_probs=71.9
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k 187 (590)
+|+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..+.
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGY 77 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 48999999999999999999999999999999999988 999999999999999999999999999999999885443
No 53
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.3e-14 Score=125.37 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=67.7
Q ss_pred CccccccCcccccceeEEeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCC
Q 007773 86 NSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQR 165 (590)
Q Consensus 86 ~~tL~dygI~~gstL~LvlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~ 165 (590)
...+++|.| ++|.++.++-.-.+.|+|++ +|+.+.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+.
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~ 81 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQ 81 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCC--STTCCEEETTEECCTTS
T ss_pred cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCcC
Confidence 356778887 56666666555456777887 89999999999999999999999999988 99999999999999999
Q ss_pred cccccCCCCCCEEEEEeec
Q 007773 166 LITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 166 tL~dy~I~~gsvI~L~vrk 184 (590)
+|++|+|++|++|+|+.+.
T Consensus 82 tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 82 TVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp BTTTTTCCTTEEEEECCCC
T ss_pred cHHHCCCCCCCEEEEEeCC
Confidence 9999999999999998764
No 54
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=1.6e-13 Score=123.15 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=70.7
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHH------hcCCCCCCCcEEEEECCEEcCCCCcccccCCCCC--CEE
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNE--AVI 178 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~------~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~g--svI 178 (590)
.+.|.|+|||.+|++++++|++++||.+||++|+. +++++.|+++|+|+|.|+.|+|+++|++|+|+.+ ++|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 35699999999999999999999999999999999 5676556999999999999999999999998765 689
Q ss_pred EEEeecC
Q 007773 179 HLLVRKS 185 (590)
Q Consensus 179 ~L~vrks 185 (590)
||++|..
T Consensus 94 hLvlr~~ 100 (116)
T 1wgh_A 94 HLVARET 100 (116)
T ss_dssp EEEECSS
T ss_pred EEEccCC
Confidence 9998754
No 55
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.47 E-value=8.8e-14 Score=120.54 Aligned_cols=77 Identities=12% Similarity=0.239 Sum_probs=72.9
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
+..|+|+|++.+|+++.++|++++||.+||++|+.+.|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++..
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 4569999999999999999999999999999999999998 9999999999999999999999999999999998743
No 56
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.47 E-value=6.8e-14 Score=117.81 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=71.6
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
..|+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 458999999999999999999999999999999999988 999999999999999999999999999999998874
No 57
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.47 E-value=6.5e-14 Score=119.00 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=71.3
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
..|+|+|++.+|+.+.++|++++||.+||++|+...|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++..
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC--TTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 458999999999999999999999999999999999988 9999999999999999999999999999999998754
No 58
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.46 E-value=1.7e-13 Score=114.73 Aligned_cols=76 Identities=21% Similarity=0.432 Sum_probs=69.6
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHh---hCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~---~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
+..|+|+| +++|+++.++|++++||.+||.+|+.+ .|+|+++|+|+|+|+.|. |+.+|++|||++|++|||+++.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC-TTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc-CCCCHHHcCCCCCCEEEEEEcC
Confidence 36799999 788999999999999999999999998 899999999999999997 8999999999999999998764
Q ss_pred c
Q 007773 107 S 107 (590)
Q Consensus 107 s 107 (590)
+
T Consensus 82 ~ 82 (85)
T 2wyq_A 82 T 82 (85)
T ss_dssp -
T ss_pred C
Confidence 3
No 59
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.46 E-value=1.2e-13 Score=129.14 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=73.3
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
++.|+|+| +++|++++++|++++||++||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||+++++|+
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 46799999 789999999999999999999999999999999999999999998 8999999999999999999999876
Q ss_pred c
Q 007773 110 Q 110 (590)
Q Consensus 110 m 110 (590)
-
T Consensus 158 ~ 158 (159)
T 3rt3_B 158 G 158 (159)
T ss_dssp -
T ss_pred C
Confidence 3
No 60
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.5e-13 Score=114.82 Aligned_cols=75 Identities=29% Similarity=0.385 Sum_probs=71.1
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
.|+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 48999999999999999999999999999999999988 9999999999999999999999999999999998843
No 61
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=4.6e-14 Score=120.46 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=67.3
Q ss_pred EEEEE-EeCCeEEEEEec--CCCCHHHHHHHH-HHhhCCCccceEEEEcCcccccCCccccccCc-ccccceeEEeee
Q 007773 34 ILIFL-SVGGSVIPMRVM--ESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLRL 106 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~--~sdTV~~LK~kI-q~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstL~LvlrL 106 (590)
|+|+| +++|++++++|+ +++||.+||.+| +.+.|+|+++|+|+|+|+.|. |+.+|++|+| ++|++|+|.++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECC-TTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECc-CcCCHHHcCCCCCCCEEEEEcCC
Confidence 89999 899998988866 999999999999 999999999999999999998 8999999999 799999998764
No 62
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.46 E-value=2.2e-13 Score=111.03 Aligned_cols=74 Identities=32% Similarity=0.445 Sum_probs=70.6
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+|++.+|+.+.++|+++.||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|+++++..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999998743
No 63
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.3e-13 Score=117.17 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=69.7
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
.+|+|+|++.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|+|+++..
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 369999999999999999999999999999999999988 9999999999999999999999999999999998743
No 64
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=4.1e-13 Score=121.91 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=69.6
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|+|+| ++ |+++.++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+|++++.++
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEEC----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCCC
Confidence 46799999 55 899999999999999999999999999999999999999997 8999999999999999999998765
No 65
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=2.6e-13 Score=114.85 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=72.0
Q ss_pred ccccceeeeccc-eeeEE-EeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 108 DLQAITVTTVCG-KVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 108 d~m~I~Vkt~~G-k~~~i-~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
..|+|+|++.+| +.+.+ +|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|.+|+|+++++|||+++..
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR--PECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC--TTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 459999999999 79999 5999999999999999999988 9999999999999999999999999999999998854
Q ss_pred C
Q 007773 186 A 186 (590)
Q Consensus 186 ~ 186 (590)
.
T Consensus 84 g 84 (89)
T 1wy8_A 84 S 84 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 66
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.45 E-value=1.4e-13 Score=120.00 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCCEEEEE-EeCCeEEEE--EecCCCCHHHHHHHH-HHhhCCCccceEEEEcCcccccCCccccccCc-ccccceeEEee
Q 007773 31 NDSILIFL-SVGGSVIPM--RVMESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLR 105 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l--~V~~sdTV~~LK~kI-q~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstL~Lvlr 105 (590)
.++|+|+| +++|+++++ +|.+++||.+||.+| +.+.|+|+++|+|+|+|+.|. |+.+|++|+| ++|++|+|+++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEEC-TTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECc-CcCCHHHcCcCCCCCEEEEEEe
Confidence 67899999 889987776 566999999999999 888999999999999999998 8999999999 99999999886
Q ss_pred e
Q 007773 106 L 106 (590)
Q Consensus 106 L 106 (590)
-
T Consensus 96 k 96 (98)
T 4a20_A 96 P 96 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=113.46 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=71.2
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
..|+|+|++.+|+.+.++|+++.||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|++++|++|+++++.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP--VRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 458999999999999999999999999999999999988 999999999999999999999999999999998864
No 68
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.18 E-value=6.7e-15 Score=120.81 Aligned_cols=74 Identities=22% Similarity=0.410 Sum_probs=71.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
|+|+| +.+|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|||++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999 789999999999999999999999999999999999999999997 899999999999999999999875
No 69
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.44 E-value=1.2e-13 Score=124.15 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=66.0
Q ss_pred EEEEE-EeCC-eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcc-------cccceeEEe
Q 007773 34 ILIFL-SVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-------DGNVLHLVL 104 (590)
Q Consensus 34 M~I~V-tl~G-~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~-------~gstL~Lvl 104 (590)
|+++| ...+ .+++++|.+++||.+||.+|+.++|+|+++|+|+|+|++|. |+.+|++|||+ ++++|||++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le-D~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCcccccccCCCCCEEEEEe
Confidence 55666 3344 57999999999999999999999999999999999999997 99999999999 799999999
Q ss_pred eeccc
Q 007773 105 RLSDL 109 (590)
Q Consensus 105 rLsd~ 109 (590)
+ .|+
T Consensus 80 r-~~g 83 (118)
T 2fnj_B 80 R-ADD 83 (118)
T ss_dssp B-SSS
T ss_pred c-CCC
Confidence 9 544
No 70
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.7e-13 Score=118.82 Aligned_cols=76 Identities=32% Similarity=0.435 Sum_probs=71.5
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
...|+|+||+.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 3459999999999999999999999999999999999988 999999999999999999999999999999999874
No 71
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.44 E-value=3.4e-13 Score=110.55 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=68.6
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
|+|+|++ +|+.+.++|+++.||.+||++|+...|++ +++|+|+|+|+.|+|+.+|++|++++|++|+++.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 8899999 99999999999999999999999999988 999999999999999999999999999999997653
No 72
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=1.4e-13 Score=118.06 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=71.6
Q ss_pred CCCEEEEE-EeCCe--EEEEEecCCCCHHHHHHHHHHhh--CCCccceEEEEcCcccccCCcccccc--CcccccceeEE
Q 007773 31 NDSILIFL-SVGGS--VIPMRVMESDSIASVKLRIQSYN--GFFVKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV 103 (590)
Q Consensus 31 ~~sM~I~V-tl~G~--t~~l~V~~sdTV~~LK~kIq~~~--Gip~~~QrLvf~Gk~L~~D~~tL~dy--gI~~gstL~Lv 103 (590)
...|+|+| +.+++ ++.++|.+++||.+||.+|++++ |+|+++|+|+|.|+.|. |+.+|.+| +|+++++|||+
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCCCEEEEE
Confidence 46799999 67777 67788889999999999999998 99999999999999998 88999999 99999999999
Q ss_pred eeeccc
Q 007773 104 LRLSDL 109 (590)
Q Consensus 104 lrLsd~ 109 (590)
+++.++
T Consensus 84 ~~~~gg 89 (93)
T 1wgd_A 84 CNVKSG 89 (93)
T ss_dssp CCCCCC
T ss_pred eCCCCC
Confidence 998765
No 73
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=1.8e-13 Score=120.49 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=72.9
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
+...|+|+| +++|+++.++|.+++||.+||.+|+.+.|+|+.+|+|+|+|+.|. |+.+|.+|||++|++|||+++.++
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCC
Confidence 467899999 789999999999999999999999999999999999999999997 899999999999999999987654
No 74
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=2.9e-13 Score=112.96 Aligned_cols=74 Identities=31% Similarity=0.386 Sum_probs=71.1
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
.|+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|+|++|.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEEC
Confidence 48999999999999999999999999999999999988 999999999999999999999999999999999874
No 75
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.43 E-value=2.6e-13 Score=121.55 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=67.6
Q ss_pred EEEEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCccc-------ccceeEEe
Q 007773 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLAD-------GNVLHLVL 104 (590)
Q Consensus 34 M~I~V--tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~-------gstL~Lvl 104 (590)
|.+|+ .....++.++|.+++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.||++|||++ +++|||++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECC-CcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 55666 555569999999999999999999999999999999999999997 999999999999 99999999
Q ss_pred eecc
Q 007773 105 RLSD 108 (590)
Q Consensus 105 rLsd 108 (590)
|..|
T Consensus 80 r~~~ 83 (118)
T 4ajy_B 80 RADD 83 (118)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9744
No 76
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.2e-13 Score=121.70 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=68.4
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
|+|+| +++|+++.++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECC-CcCCHHHcCCCCCCEEEEEEcCC
Confidence 88999 689999999999999999999999999999999999999999997 89999999999999999998754
No 77
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=3.4e-13 Score=120.99 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=69.9
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHH------hhCC--CccceEEEEcCcccccCCccccccCcccc--c
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS------YNGF--FVKKQKLVFEGRELARSNSRVRDYGLADG--N 98 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~------~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~g--s 98 (590)
+.+.|+|+| +++|++++++|++++||.+||.+|+. ++|+ ++++|+|+|+|++|+ |+.+|++|+|+.+ .
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~Le-D~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTT 91 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCce
Confidence 367899999 78999999999999999999999999 6775 699999999999997 9999999999765 6
Q ss_pred ceeEEeeec
Q 007773 99 VLHLVLRLS 107 (590)
Q Consensus 99 tL~LvlrLs 107 (590)
+|||++++.
T Consensus 92 tlhLvlr~~ 100 (116)
T 1wgh_A 92 VMHLVARET 100 (116)
T ss_dssp EEEEEECSS
T ss_pred EEEEEccCC
Confidence 899998875
No 78
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.42 E-value=5.9e-13 Score=109.14 Aligned_cols=71 Identities=27% Similarity=0.463 Sum_probs=66.8
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
|+|+|+.+|+++.++|.+++||.+||.+|+...|+|++.|+|+|+|+.|. |+.+|++|||++|++||++.+
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEEc
Confidence 88999339999999999999999999999999999999999999999997 889999999999999998764
No 79
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.42 E-value=3.5e-13 Score=122.34 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=71.6
Q ss_pred CCCEEEEE-EeCCeEE-EEEecCCCCHHHHHHHH-----HHhhCCCc--cceEEEEcCcccccCCccccccCcccc----
Q 007773 31 NDSILIFL-SVGGSVI-PMRVMESDSIASVKLRI-----QSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADG---- 97 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~-~l~V~~sdTV~~LK~kI-----q~~~Gip~--~~QrLvf~Gk~L~~D~~tL~dygI~~g---- 97 (590)
.+.|+|+| +++|+.+ ++++++++||.+||++| +.++|+|+ ++|+|+|+|++|+ |+.+|++|+|+.+
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~Le-D~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECc-CCCcHHHcCCCcCCccC
Confidence 58899999 9999877 79999999999999999 66788986 8999999999998 9999999999998
Q ss_pred --cceeEEeeeccc
Q 007773 98 --NVLHLVLRLSDL 109 (590)
Q Consensus 98 --stL~LvlrLsd~ 109 (590)
.++||+++++++
T Consensus 93 ~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 93 AVTTMHVIIQAPVT 106 (126)
T ss_dssp CCEEEEEEECCCSS
T ss_pred CcEEEEEEeccCCc
Confidence 789999999865
No 80
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=3.4e-13 Score=118.67 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=72.8
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
..|+|+||+.+|+.+.++|++++||.+||++|+.+.|++ +++|+|+|+|+.|+|+++|++|+|++|++|||+++++.
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC--STTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 348999999999999999999999999999999999988 99999999999999999999999999999999987654
No 81
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.42 E-value=3.9e-13 Score=115.97 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=71.3
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEEeecC
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~-~tL~dy~I~~gsvI~L~vrks 185 (590)
...|+|+||+.+| ++.++|++++||.+||++|+.+.|++ +++|+|+|+|+.|+|+ .+|++|+|+++++|+|+++..
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP--IKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC--TTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 4568999999888 89999999999999999999999998 9999999999999999 999999999999999998854
No 82
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=3.9e-13 Score=117.28 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
.+..|+|+| +++|+ +.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||+++++|+|++++++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEcCCC
Confidence 367899999 66776 799999999999999999999999999999999999997 899999999999999999998875
Q ss_pred c
Q 007773 109 L 109 (590)
Q Consensus 109 ~ 109 (590)
+
T Consensus 97 ~ 97 (100)
T 1yqb_A 97 R 97 (100)
T ss_dssp S
T ss_pred C
Confidence 4
No 83
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=4.4e-13 Score=115.54 Aligned_cols=73 Identities=18% Similarity=0.424 Sum_probs=69.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHh---hCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~---~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
|+|+| +++|+++.++|++++||.+||.+|+.. +|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEeCC
Confidence 89999 788999999999999999999999999 899999999999999997 89999999999999999988754
No 84
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=3.2e-13 Score=122.60 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=70.5
Q ss_pred eecccccceeeeccceee-EEEeecCCcHHHHHHHHH-----HhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCC---
Q 007773 105 RLSDLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIA-----KKGREFVDLKNQELICDGEELEDQRLITDICKRNE--- 175 (590)
Q Consensus 105 rLsd~m~I~Vkt~~Gk~~-~i~Vd~s~TV~~LK~kI~-----~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~g--- 175 (590)
...+.|.|+|||.+|+.+ ++++++++||.+||++|+ .++++|.++++|+|+|+|+.|+|+++|++|+|+.+
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 345789999999999988 699999999999999995 45567633489999999999999999999999988
Q ss_pred ---CEEEEEeecC
Q 007773 176 ---AVIHLLVRKS 185 (590)
Q Consensus 176 ---svI~L~vrks 185 (590)
+++||+++..
T Consensus 92 ~~v~tmhlVlrl~ 104 (126)
T 1se9_A 92 GAVTTMHVIIQAP 104 (126)
T ss_dssp TCCEEEEEEECCC
T ss_pred CCcEEEEEEeccC
Confidence 6899998743
No 85
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.41 E-value=4.9e-13 Score=118.60 Aligned_cols=78 Identities=35% Similarity=0.576 Sum_probs=73.3
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-SSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 46899999 678999999999999999999999999999999999999999997 8999999999999999999998764
No 86
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=2.5e-13 Score=120.43 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCCEEEEE-Ee---CCeEEEEEecC-CCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 31 NDSILIFL-SV---GGSVIPMRVME-SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 31 ~~sM~I~V-tl---~G~t~~l~V~~-sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
...|+|+| +. +|+++.++|.+ ++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||+++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEECS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCcHHHCCCCCCCEEEEEEE
Confidence 46799999 66 78999999998 99999999999999999999999999999997 899999999999999999999
Q ss_pred eccc
Q 007773 106 LSDL 109 (590)
Q Consensus 106 Lsd~ 109 (590)
++++
T Consensus 104 ~~GG 107 (111)
T 1we6_A 104 ERSG 107 (111)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9876
No 87
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=1.8e-13 Score=117.82 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=72.4
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|+|+|+..|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|.+|+|+++++|||++++.++
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 47799999433999999999999999999999999999999999999999997 8999999999999999999988764
No 88
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=1.3e-13 Score=121.68 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=71.1
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCC---------------CcEEEEECCEEcC-CCCcccccCC
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---------------KNQELICDGEELE-DQRLITDICK 172 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~---------------~~Q~Lif~Gk~Le-D~~tL~dy~I 172 (590)
.|+|+|++.+|+++.++|++++||.+||++|+++.+++ + ++|+|+|+|+.|. |.++|.+|+|
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~--~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 39999999999999999999999999999999999876 5 4689999999996 6799999999
Q ss_pred CCCCEEEEEeecCCCc
Q 007773 173 RNEAVIHLLVRKSAKV 188 (590)
Q Consensus 173 ~~gsvI~L~vrks~kv 188 (590)
+++++|||+.+...+-
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999866553
No 89
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.40 E-value=7.4e-13 Score=114.46 Aligned_cols=74 Identities=32% Similarity=0.447 Sum_probs=71.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+|++.+|+.+.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|+++++++|+|+++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999998854
No 90
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.40 E-value=3.6e-13 Score=120.95 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=66.8
Q ss_pred ccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCC-------CCCEEEEE
Q 007773 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR-------NEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~-------~gsvI~L~ 181 (590)
|.++|++..++ ++.++|++++||.+||++|+.+.|++ +++|+|+|+|+.|+|+++|++|+|+ ++++|||+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence 56777777775 58899999999999999999999998 9999999999999999999999999 79999999
Q ss_pred ee
Q 007773 182 VR 183 (590)
Q Consensus 182 vr 183 (590)
+|
T Consensus 79 lr 80 (118)
T 2fnj_B 79 FR 80 (118)
T ss_dssp EB
T ss_pred ec
Confidence 98
No 91
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.40 E-value=5.4e-13 Score=119.55 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=68.3
Q ss_pred ccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCC-------CCEEEEE
Q 007773 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRN-------EAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~-------gsvI~L~ 181 (590)
|.+||+...++ ++.++|++++||.+||++|+.+.|++ +++|+|+|+|+.|+|.+||++|+|++ +++|||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 56777777776 77889999999999999999999998 99999999999999999999999999 9999999
Q ss_pred eecC
Q 007773 182 VRKS 185 (590)
Q Consensus 182 vrks 185 (590)
+|..
T Consensus 79 lr~~ 82 (118)
T 4ajy_B 79 FRAD 82 (118)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9854
No 92
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=6.1e-13 Score=116.28 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=70.7
Q ss_pred CCCEEEEE-EeCC----eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 31 NDSILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 31 ~~sM~I~V-tl~G----~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
...|+|+| ..++ +++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|.+|..+|.+|+|+++++|||+.+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 45699999 5543 799999999999999999999999999999999999999983337999999999999999998
Q ss_pred eccc
Q 007773 106 LSDL 109 (590)
Q Consensus 106 Lsd~ 109 (590)
.+++
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8665
No 93
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=115.21 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=68.4
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
...|+|+|++ |+.+.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIA--PEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCC--GGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 4569999998 8999999999999999999999999988 999999999999999999999999999999999874
No 94
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=8.3e-13 Score=115.19 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=72.3
Q ss_pred ecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
.+..|+|+|++.+|+ +.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 345699999999886 7999999999999999999999988 9999999999999999999999999999999998865
Q ss_pred C
Q 007773 186 A 186 (590)
Q Consensus 186 ~ 186 (590)
.
T Consensus 96 ~ 96 (100)
T 1yqb_A 96 H 96 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 95
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.39 E-value=8.7e-13 Score=117.13 Aligned_cols=74 Identities=32% Similarity=0.442 Sum_probs=71.4
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
.|+|+|++.+|+.+.++|+++.||.+||++|+++.++| +++|+|+|+|+.|+|..+|++|+|+++++|||++|.
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 48999999999999999999999999999999999988 999999999999999999999999999999999874
No 96
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=114.11 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=71.4
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
...|+|+|+..|+++.++|++++||.+||.+|+...|+|+..|+|+|+|+.|. |+.+|++|||++|++|+|+++++.
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCC
Confidence 57899999434899999999999999999999999999999999999999997 899999999999999999988754
No 97
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.09 E-value=3.2e-14 Score=116.77 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=70.7
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+|++.+|+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|++++|++|||++|..
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999998743
No 98
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.39 E-value=4.6e-13 Score=121.67 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=70.2
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHH------hcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCC--EEE
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNEA--VIH 179 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~------~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gs--vI~ 179 (590)
..|.|+|||.+|++++++|++++||.+||++|+. +++++.++++|+|+|+|+.|+|+++|++|+|+.++ +||
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4588999999999999999999999999999999 67775558999999999999999999999998665 789
Q ss_pred EEeecC
Q 007773 180 LLVRKS 185 (590)
Q Consensus 180 L~vrks 185 (590)
|++|..
T Consensus 96 lv~r~~ 101 (125)
T 2gow_A 96 LVARET 101 (125)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 988754
No 99
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=6.6e-13 Score=113.80 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=68.7
Q ss_pred ccccceeeeccce--eeEEEeecCCcHHHHHHHHHHhc--CCCCCCCcEEEEECCEEcCCCCccccc--CCCCCCEEEEE
Q 007773 108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL 181 (590)
Q Consensus 108 d~m~I~Vkt~~Gk--~~~i~Vd~s~TV~~LK~kI~~~~--gi~~~~~~Q~Lif~Gk~LeD~~tL~dy--~I~~gsvI~L~ 181 (590)
..|+|+||+.+|+ .+.++|++++||.+||++|+++. +++ +++|+|+|+|+.|+|+++|++| +|+++++|||+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 3489999999988 56667779999999999999998 887 9999999999999999999999 99999999999
Q ss_pred eecC
Q 007773 182 VRKS 185 (590)
Q Consensus 182 vrks 185 (590)
++..
T Consensus 84 ~~~~ 87 (93)
T 1wgd_A 84 CNVK 87 (93)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 8743
No 100
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=7.4e-13 Score=115.69 Aligned_cols=65 Identities=8% Similarity=-0.011 Sum_probs=59.8
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
++++.++|++++||.+||++|++++|+| +++|+|+|+|++|+|+++|++|+|+++++|+++.-+.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg 93 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQ 93 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcC--HHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECC
Confidence 7889999999999999999999999988 9999999999999999999999999999995543333
No 101
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=114.24 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=71.8
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
...|+|+|++. |+.+.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.+.
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC--GGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 45689999998 8899999999999999999999999988 99999999999999999999999999999999987553
No 102
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=2.8e-13 Score=118.32 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCEEEEE-EeC--CeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 32 DSILIFL-SVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 32 ~sM~I~V-tl~--G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
.+++|++ .-. +++++++|.+++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|++|++| +++++++
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~-D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEE-EEECCCC
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECC-CCCcHHHcCCCCCCEE-EEEEECC
Confidence 4566665 212 689999999999999999999999999999999999999997 8999999999999999 6666654
No 103
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.38 E-value=1.2e-12 Score=124.84 Aligned_cols=74 Identities=32% Similarity=0.456 Sum_probs=71.3
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+||+.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+++|++|+|+++++|||++|..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~ 74 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEec
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999999844
No 104
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.37 E-value=7e-13 Score=125.91 Aligned_cols=78 Identities=35% Similarity=0.604 Sum_probs=70.5
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.+.|+|+| +.+|++++++|.+++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|||+++++++
T Consensus 94 ~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 94 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBSGGGTCCTTCEEEECC-----
T ss_pred cccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCC-CCCcHHHhCCCCCCEEEEEEecCCC
Confidence 46799999 899999999999999999999999999999999999999999997 8999999999999999999998874
No 105
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.37 E-value=9e-13 Score=116.82 Aligned_cols=79 Identities=23% Similarity=0.268 Sum_probs=73.2
Q ss_pred cccccceeeec---cceeeEEEeec-CCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 107 SDLQAITVTTV---CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 107 sd~m~I~Vkt~---~Gk~~~i~Vd~-s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
++.|+|+|++. +|+.+.++|++ ++||.+||++|+...|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 45689999998 89999999998 999999999999999988 9999999999999999999999999999999998
Q ss_pred e-cCCC
Q 007773 183 R-KSAK 187 (590)
Q Consensus 183 r-ks~k 187 (590)
+ ++.|
T Consensus 103 r~~GGk 108 (111)
T 1we6_A 103 RERSGP 108 (111)
T ss_dssp SSCCSS
T ss_pred EcCCCC
Confidence 8 4443
No 106
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.37 E-value=8.8e-13 Score=119.80 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=69.8
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHH------hhCCC--ccceEEEEcCcccccCCccccccCccccc--c
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS------YNGFF--VKKQKLVFEGRELARSNSRVRDYGLADGN--V 99 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~------~~Gip--~~~QrLvf~Gk~L~~D~~tL~dygI~~gs--t 99 (590)
...|+|+| +++|++++++|++++||.+||++|++ ++|+| +++|+|+|+|+.|+ |+.+|++|+|+.++ +
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~Le-D~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV 93 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEE-SSCBTGGGCCCTTSEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence 45699999 78999999999999999999999999 78884 89999999999998 99999999999665 7
Q ss_pred eeEEeeecc
Q 007773 100 LHLVLRLSD 108 (590)
Q Consensus 100 L~LvlrLsd 108 (590)
+||++++..
T Consensus 94 lhlv~r~~~ 102 (125)
T 2gow_A 94 MHLVARETL 102 (125)
T ss_dssp EEEEECSCC
T ss_pred EEEEecCCC
Confidence 899998864
No 107
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.4e-12 Score=114.52 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=71.2
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|+|+| ..+|+ +.++|.+++||.+||.+|++++|+++++|+|+|+|+.|. |+.+|.+|+|+++++|||++++.++
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC-TTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 56799999 56665 799999999999999999999999999999999999997 8999999999999999999988765
No 108
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=114.66 Aligned_cols=76 Identities=32% Similarity=0.413 Sum_probs=71.9
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
..|+|+|++.+|+.+.++|+++.||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|+|++|..
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 358999999999999999999999999999999999988 9999999999999999999999999999999998743
No 109
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.36 E-value=1.8e-12 Score=114.21 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=65.9
Q ss_pred CCCEEEEE-EeC--CeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCc-ccccceeEEee
Q 007773 31 NDSILIFL-SVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLR 105 (590)
Q Consensus 31 ~~sM~I~V-tl~--G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstL~Lvlr 105 (590)
+=.|+|+| ... +.+++++|.|++||++||.+|++++|+|+.+|||+|+|+.+. |+.+|.+||| ++|+++||++.
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~-D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR-DQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC-TTCBTGGGTCCSTTCEEEEEEC
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc-CcCcHHHcCCCCCCCEEEEEEE
Confidence 34577777 555 379999999999999999999999999999999999999776 8999999999 69999999873
No 110
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.36 E-value=5.8e-14 Score=127.73 Aligned_cols=76 Identities=36% Similarity=0.606 Sum_probs=0.4
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m 110 (590)
|+|+| +++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp -----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECC-CCCchhhhccCCCCEEEEEEEcCCCC
Confidence 89999 889999999999999999999999999999999999999999997 89999999999999999999998763
No 111
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=2.2e-12 Score=113.32 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=71.0
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k 187 (590)
..|+|+|++.+|+ +.++|+.++||.+||++|++..+++ +++|+|+|+|+.|+|+++|.+|+|+++++|||+++....
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC--TTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 4489999998886 7999999999999999999999988 999999999999999999999999999999999885543
No 112
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=1.7e-12 Score=117.85 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=69.9
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
..|+|+|++. |+.+.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+++|.+|+|+++++|+|+++...
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC--SSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 4589999998 9999999999999999999999999988 99999999999999999999999999999999988543
No 113
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=2.9e-12 Score=108.36 Aligned_cols=75 Identities=25% Similarity=0.470 Sum_probs=69.8
Q ss_pred CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
+.+++.+.++++|+++.++|++++||.+||.+|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV-ETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECC-TTCBTTTTTCCTTEEEEEECC
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECC-CcCCHHHCCCCCCCEEEEEEe
Confidence 457788877999999999999999999999999999999999999999999997 899999999999999998753
No 114
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=9.6e-13 Score=113.24 Aligned_cols=75 Identities=25% Similarity=0.320 Sum_probs=70.6
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
..|+|+|++. |+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+++|.+|+|+++++|||+++..
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC--TTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 4589999998 9999999999999999999999999988 9999999999999999999999999999999988754
No 115
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=1.8e-12 Score=111.43 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=70.3
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEEeecCC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~-~tL~dy~I~~gsvI~L~vrks~ 186 (590)
..|+|+|++.+|+.+.++|++++||.+||++|+... +++|+|+|+|+.|+|+ ++|.+|+|+++++|||+++++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ-----ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST-----TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC-----cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 358999999999999999999999999999999886 5899999999999999 9999999999999999988665
Q ss_pred Ccc
Q 007773 187 KVR 189 (590)
Q Consensus 187 kv~ 189 (590)
..+
T Consensus 81 ~~~ 83 (95)
T 1wia_A 81 AAV 83 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 116
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.1e-12 Score=114.19 Aligned_cols=79 Identities=29% Similarity=0.389 Sum_probs=73.9
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
.+..+|+|++.+|+.+.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++...
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 3567899999999999999999999999999999999988 99999999999999999999999999999999988554
Q ss_pred C
Q 007773 187 K 187 (590)
Q Consensus 187 k 187 (590)
.
T Consensus 85 G 85 (114)
T 2kdi_A 85 G 85 (114)
T ss_dssp S
T ss_pred C
Confidence 3
No 117
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.34 E-value=2.3e-12 Score=114.92 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=72.0
Q ss_pred CCCEEEEEEe-----------CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccc
Q 007773 31 NDSILIFLSV-----------GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNV 99 (590)
Q Consensus 31 ~~sM~I~Vtl-----------~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gst 99 (590)
+..|+|+|+. +|+++.++|++++||.+||.+|+...|+|+++|+|+|+|+.|. |+.+|++|+|+++++
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMASGAV 101 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC-TTSBHHHHTCCSSCE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC-CCCCHHHCCCCCCCE
Confidence 4578888832 4789999999999999999999999999999999999999997 899999999999999
Q ss_pred eeEEeeeccc
Q 007773 100 LHLVLRLSDL 109 (590)
Q Consensus 100 L~LvlrLsd~ 109 (590)
|||++++.++
T Consensus 102 i~lv~rl~GG 111 (115)
T 1we7_A 102 IHLALKERSG 111 (115)
T ss_dssp EEEEECCCSC
T ss_pred EEEEEEcCCC
Confidence 9999999876
No 118
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.33 E-value=1.8e-12 Score=110.67 Aligned_cols=76 Identities=16% Similarity=0.334 Sum_probs=70.9
Q ss_pred CCCEEEEEEeCCeEEEE-EecCCCCHHHHHHHHHHhhCCCccceEEE---EcCcccccCCccccccCcccccceeEEeee
Q 007773 31 NDSILIFLSVGGSVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l-~V~~sdTV~~LK~kIq~~~Gip~~~QrLv---f~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
...|+|+|+..|+++.+ +|++++||.+||.+|++++|+|+++|+|+ |.|+.|. |+.+|++|+|+++++|+|+...
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~-D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECCC
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC-CCCCHHHcCCCCCCEEEEEecC
Confidence 57899999779999999 99999999999999999999999999999 9999997 8999999999999999998654
Q ss_pred c
Q 007773 107 S 107 (590)
Q Consensus 107 s 107 (590)
.
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 3
No 119
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=114.47 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=65.6
Q ss_pred ccccceeeeccce--eeEEEeecCCcHHHHHHHHHHh-cCCCCCCCcEEEEECCEEcCCCCccccc--CCCCCCEEEEE
Q 007773 108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKK-GREFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL 181 (590)
Q Consensus 108 d~m~I~Vkt~~Gk--~~~i~Vd~s~TV~~LK~kI~~~-~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy--~I~~gsvI~L~ 181 (590)
..|+|+||+.+|+ .++++|++++||.+||++|+++ .|++ |+++|+|+|+|+.|+|+++|++| +|+++++|||+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKP-LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCC-CTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCC-ChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4589999999998 6789999999999999999986 4655 36999999999999999999999 99999999984
No 120
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=2e-12 Score=112.97 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=71.1
Q ss_pred ccccceeeeccc----eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEEe
Q 007773 108 DLQAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLV 182 (590)
Q Consensus 108 d~m~I~Vkt~~G----k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~-~tL~dy~I~~gsvI~L~v 182 (590)
..|+|+|++.++ +.+.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+ ++|++|+|+++++|+|+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC--hHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 358899998654 789999999999999999999999988 9999999999999987 799999999999999988
Q ss_pred ecCCCcc
Q 007773 183 RKSAKVR 189 (590)
Q Consensus 183 rks~kv~ 189 (590)
+....-+
T Consensus 84 ~~~gg~~ 90 (102)
T 1v5o_A 84 KDNVGLR 90 (102)
T ss_dssp CCCCCCS
T ss_pred CCCCCCC
Confidence 7554433
No 121
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.33 E-value=1.2e-13 Score=129.49 Aligned_cols=75 Identities=36% Similarity=0.623 Sum_probs=0.0
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+|+| +++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|++|. |+.+|++|+|++|++|+|++++.++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcc-ccCcHHHcCCCCCCEEEEEeeccCC
Confidence 89999 889999999999999999999999999999999999999999997 8999999999999999999999876
No 122
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=2.2e-12 Score=111.71 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCCEEEEEEeCCeEE-EEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 31 NDSILIFLSVGGSVI-PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~-~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
.+.|+|+|+..|+++ .++|++++||.+||.+|++++|+|+++|+|+|.|+.|. |+ +|.+|+|+++++|+|+....
T Consensus 5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecch
Confidence 578999997789999 69999999999999999999999999999999999997 77 99999999999999987654
No 123
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.32 E-value=4.4e-12 Score=116.79 Aligned_cols=78 Identities=35% Similarity=0.604 Sum_probs=73.4
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|+|+| +++|+++.++|.+++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||+++++|+
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 45699999 789999999999999999999999999999999999999999997 8999999999999999999998874
No 124
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=3.2e-12 Score=109.84 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCC-ccccccCcccccceeEEeeec
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstL~LvlrLs 107 (590)
+...|+|+| +++|+++.++|.+++||.+||.+|+.+. +++|+|+|+|+.|. |+ .+|++|+|++|++|||+++.+
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~-D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQ-DPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECC-CSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEcc-CCcCCHHHcCCCCCCEEEEEECCC
Confidence 357899999 7899999999999999999999999987 89999999999998 67 999999999999999998765
Q ss_pred c
Q 007773 108 D 108 (590)
Q Consensus 108 d 108 (590)
.
T Consensus 80 ~ 80 (95)
T 1wia_A 80 G 80 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 125
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.32 E-value=4.7e-12 Score=111.53 Aligned_cols=73 Identities=12% Similarity=-0.039 Sum_probs=68.2
Q ss_pred ccceeeeccc--eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-CCCCEEEEEeec
Q 007773 110 QAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRK 184 (590)
Q Consensus 110 m~I~Vkt~~G--k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I-~~gsvI~L~vrk 184 (590)
|+|+|++..+ .+++++|++++||.+||++|++++|+| +++|+|+|+|+.++|+++|.+|+| ++|+++||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 7899998774 789999999999999999999999998 999999999999999999999999 699999998753
No 126
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=113.93 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=63.8
Q ss_pred CCCEEEEE-EeCCe--EEEEEecCCCCHHHHHHHHHHh-hCCC-ccceEEEEcCcccccCCcccccc--CcccccceeEE
Q 007773 31 NDSILIFL-SVGGS--VIPMRVMESDSIASVKLRIQSY-NGFF-VKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV 103 (590)
Q Consensus 31 ~~sM~I~V-tl~G~--t~~l~V~~sdTV~~LK~kIq~~-~Gip-~~~QrLvf~Gk~L~~D~~tL~dy--gI~~gstL~Lv 103 (590)
...|+|+| +++|+ +++++|.+++||.+||.+|+++ .|.| +++|+|+|+|+.|. |+.+|++| +|+++++|||+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~-D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEEC-TTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECC-CCCCHHHHhcCCCCCCEEEeC
Confidence 57799999 67777 6799999999999999999986 5666 59999999999998 89999999 99999999985
No 127
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=5.2e-12 Score=107.87 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=69.1
Q ss_pred CCCEEEEEEeCCeEEEEEecCC-----CCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 31 NDSILIFLSVGGSVIPMRVMES-----DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~s-----dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
...|+|+|+..|+++.++|.++ +||.+||.+|++.+|+|+++|+|+|.|+.|.+++.+|.+|+|+++++|||+.+
T Consensus 5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 4689999966789999999995 99999999999999999999999999999984467899999999999999875
Q ss_pred e
Q 007773 106 L 106 (590)
Q Consensus 106 L 106 (590)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.9e-12 Score=112.10 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=67.3
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE--cCcccccCCccccccCcccccceeEEeee
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf--~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
...|++++ +++|++++++|++++||++||.+|++++|||+++|+|+| .|+ |. |+.+|++|+|+.|++|||++.-
T Consensus 6 ~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 6 SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSS
T ss_pred CcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecC
Confidence 34688888 899999999999999999999999999999999999986 666 86 8999999999999999998764
No 129
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.30 E-value=3.4e-12 Score=123.67 Aligned_cols=75 Identities=32% Similarity=0.422 Sum_probs=71.9
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
.|+|+||+.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||+++..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC--HHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence 39999999999999999999999999999999999988 9999999999999999999999999999999998744
No 130
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.29 E-value=7.5e-12 Score=111.63 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=64.3
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee-cCCC
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR-KSAK 187 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr-ks~k 187 (590)
++|+.+.++|++++||.+||++|+...|++ +++|+|+|+|+.|+|+.+|++|+|+++++|||+++ ++++
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMP--AGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCC--TTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCC--hHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 468999999999999999999999999988 99999999999999999999999999999999988 4433
No 131
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.29 E-value=6.7e-12 Score=110.61 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=68.7
Q ss_pred cccceeeeccc---eeeEEE--------eecC-CcHHHHHHHHHHhc--CCCCCCCc-EEEEECCEEcCCCCcccccCCC
Q 007773 109 LQAITVTTVCG---KVFEFH--------VERG-RNVGYVKQQIAKKG--REFVDLKN-QELICDGEELEDQRLITDICKR 173 (590)
Q Consensus 109 ~m~I~Vkt~~G---k~~~i~--------Vd~s-~TV~~LK~kI~~~~--gi~~~~~~-Q~Lif~Gk~LeD~~tL~dy~I~ 173 (590)
.|+|+||+.++ +++.++ |+++ +||.+||++|+... +++ +++ |+|+|+|+.|+|+++|++|+|+
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip--~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP--DPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC--CSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC--hhhcEEEEECCeECCCCCcHHHcCCC
Confidence 48999999988 889999 4454 99999999999999 988 999 9999999999999999999999
Q ss_pred CCCEEEEEeecC
Q 007773 174 NEAVIHLLVRKS 185 (590)
Q Consensus 174 ~gsvI~L~vrks 185 (590)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998755
No 132
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.28 E-value=1.3e-11 Score=106.99 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=66.1
Q ss_pred CCCCCCCEEEEEEe-CC--eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEc--Cc---ccccCCccccccCccccc
Q 007773 27 EKLSNDSILIFLSV-GG--SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GR---ELARSNSRVRDYGLADGN 98 (590)
Q Consensus 27 ~~~~~~sM~I~Vtl-~G--~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~--Gk---~L~~D~~tL~dygI~~gs 98 (590)
++.+.+.+.|+|+. .+ .+++++|.+++||++||.+|+.++|+|+.+|+|+|. |+ .|.+|+.+|.+|||++|+
T Consensus 9 ~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gs 88 (95)
T 2kjr_A 9 SHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGL 88 (95)
T ss_dssp CCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSC
T ss_pred ccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCC
Confidence 33346889999953 33 489999999999999999999999999999999998 45 464589999999999999
Q ss_pred ceeEE
Q 007773 99 VLHLV 103 (590)
Q Consensus 99 tL~Lv 103 (590)
+|||+
T Consensus 89 tihlv 93 (95)
T 2kjr_A 89 RLHVV 93 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 133
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=5.9e-12 Score=109.02 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=72.0
Q ss_pred ccccceeeeccceee-EEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 108 DLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~-~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
..|+|+|+. .|+.+ .++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|. +|++|+|+++++|+|+....+
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~ 81 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA 81 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh
Confidence 348899995 68999 699999999999999999999988 9999999999999999 999999999999999776553
Q ss_pred CccCCCCcc
Q 007773 187 KVRAKPVQK 195 (590)
Q Consensus 187 kv~~~p~~k 195 (590)
++..|.++
T Consensus 82 -~~~~p~~~ 89 (96)
T 1wgg_A 82 -LPEEPSAK 89 (96)
T ss_dssp -CCCCCCCS
T ss_pred -cCCCCCcC
Confidence 54445443
No 134
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.28 E-value=9e-12 Score=105.33 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=66.1
Q ss_pred cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
.+++++.+|+.+.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|++++|++|+|+..
T Consensus 13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVL--PRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCC--TTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 355677889999999999999999999999999988 99999999999999999999999999999999764
No 135
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.27 E-value=3.6e-13 Score=122.50 Aligned_cols=74 Identities=32% Similarity=0.456 Sum_probs=0.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|+|+|++.+|+++.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC--hHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999998843
No 136
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.7e-12 Score=113.43 Aligned_cols=72 Identities=28% Similarity=0.467 Sum_probs=65.6
Q ss_pred CEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 33 sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
.|.|+|+.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+
T Consensus 28 ~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 28 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp -CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECC-TTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 455666448899999999999999999999999999999999999999997 899999999999999999865
No 137
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.26 E-value=6.3e-12 Score=108.56 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=68.3
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
...|+|+|+..++++.++|++++||.+||.+|+.++|+|+++|+|+|.|+.|. |. +|.+|+|+++++|||+.+.
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SS-BHHHHCCCTTEEEEECCSS
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cC-cHHHCCCCCCCEEEEEecc
Confidence 57799999888999999999999999999999999999999999999999993 55 9999999999999987643
No 138
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.25 E-value=1.3e-11 Score=105.04 Aligned_cols=72 Identities=18% Similarity=0.132 Sum_probs=63.3
Q ss_pred CEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE-------cCcccccCCccccccCcccccceeE
Q 007773 33 SILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-------EGRELARSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 33 sM~I~Vt---l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf-------~Gk~L~~D~~tL~dygI~~gstL~L 102 (590)
.++|.|+ ...+.+.+++++++||.+||.+|+.++|+|+++|+|+| .|+.|. |+.+|.+|||++|++|||
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~-d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMA-NDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCC-TTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcC-CCCCHHHCCCCCCCEEEE
Confidence 3567774 34567899999999999999999999999999999996 588887 999999999999999999
Q ss_pred Eee
Q 007773 103 VLR 105 (590)
Q Consensus 103 vlr 105 (590)
+-+
T Consensus 81 vd~ 83 (86)
T 4b6w_A 81 VDL 83 (86)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 139
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.23 E-value=1.6e-11 Score=104.87 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=69.4
Q ss_pred ccccceeeeccceeeEE-EeecCCcHHHHHHHHHHhcCCCCCCCcEEEE---ECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 108 DLQAITVTTVCGKVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i-~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li---f~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
..|+|+|+. .|+.+.+ +|++++||.+||++|+++.|++ +++|+|+ |+|+.|+|+.+|++|+|+++++|+|+..
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 358899996 7899999 9999999999999999999998 9999999 9999999999999999999999999765
Q ss_pred cC
Q 007773 184 KS 185 (590)
Q Consensus 184 ks 185 (590)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 44
No 140
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.23 E-value=2.6e-11 Score=105.39 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=65.3
Q ss_pred CCCCEEEEEEeC---CeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc---c---cccCCccccccCcccccce
Q 007773 30 SNDSILIFLSVG---GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR---E---LARSNSRVRDYGLADGNVL 100 (590)
Q Consensus 30 ~~~sM~I~Vtl~---G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk---~---L~~D~~tL~dygI~~gstL 100 (590)
+.+.+.|+|+.+ +..++++|.+++||++||.+|+.++|+|+.+|+|+|.|+ . |.+|+.+|.+|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 468899999543 247999999999999999999999999999999999984 3 4348999999999999999
Q ss_pred eEEe
Q 007773 101 HLVL 104 (590)
Q Consensus 101 ~Lvl 104 (590)
||+-
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9863
No 141
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.23 E-value=9.2e-13 Score=123.55 Aligned_cols=72 Identities=33% Similarity=0.479 Sum_probs=0.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
|+|+|++.+|+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 7899999999999999999999999999999999988 99999999999999999999999999999999977
No 142
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.22 E-value=1.2e-11 Score=108.98 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=68.4
Q ss_pred CCCEEEEE-EeCC---eEEEEEe--------cCC-CCHHHHHHHHHHhh--CCCccc-eEEEEcCcccccCCccccccCc
Q 007773 31 NDSILIFL-SVGG---SVIPMRV--------MES-DSIASVKLRIQSYN--GFFVKK-QKLVFEGRELARSNSRVRDYGL 94 (590)
Q Consensus 31 ~~sM~I~V-tl~G---~t~~l~V--------~~s-dTV~~LK~kIq~~~--Gip~~~-QrLvf~Gk~L~~D~~tL~dygI 94 (590)
...|+|+| +.++ +++.++| .++ +||.+||.+|+.++ |+|+++ |+|+|.|+.|. |+.+|++|+|
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~-D~~tL~~y~i 88 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGI 88 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECC-CCCcHHHcCC
Confidence 46699999 6777 7999994 454 99999999999999 999999 99999999997 8999999999
Q ss_pred ccccceeEEeeec
Q 007773 95 ADGNVLHLVLRLS 107 (590)
Q Consensus 95 ~~gstL~LvlrLs 107 (590)
+++++|||+++..
T Consensus 89 ~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 89 QPGSTVHVLRKSW 101 (107)
T ss_dssp CTTCEEEEEESSC
T ss_pred CCCCEEEEEeCCC
Confidence 9999999998764
No 143
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=2.7e-11 Score=103.43 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=67.9
Q ss_pred ccccceeeeccceeeEEEeecC-----CcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCC-CCcccccCCCCCCEEEEE
Q 007773 108 DLQAITVTTVCGKVFEFHVERG-----RNVGYVKQQIAKKGREFVDLKNQELICDGEELED-QRLITDICKRNEAVIHLL 181 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s-----~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD-~~tL~dy~I~~gsvI~L~ 181 (590)
..|+|+|++ .|+.+.++|+++ .||.+||++|++..|++ +++|+|+|+|+.|+| ..+|++|+++++++|+|+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC--HHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 358899998 588899999995 99999999999999988 999999999999998 668999999999999998
Q ss_pred eecC
Q 007773 182 VRKS 185 (590)
Q Consensus 182 vrks 185 (590)
.++.
T Consensus 83 ~~~~ 86 (92)
T 1wxv_A 83 GKKN 86 (92)
T ss_dssp SCCS
T ss_pred ecCC
Confidence 7654
No 144
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.6e-11 Score=108.24 Aligned_cols=88 Identities=11% Similarity=0.148 Sum_probs=75.2
Q ss_pred CCCEEEEEE--eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 31 NDSILIFLS--VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 31 ~~sM~I~Vt--l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
+..|.|.|. .++..+++++.++.||.+||.+++.+.++|+++|+|+|+|+.|. |+.||.+|||++|.+|||+++-.+
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLK-D~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILK-NNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEEC-SSCCHHHHSCCSSCEEEEEEEESC
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcC-CcchHHHcCCCCCCEEEEEEecCC
Confidence 566777773 35789999999999999999999999999999999999999998 899999999999999999998765
Q ss_pred cccceeeeccc
Q 007773 109 LQAITVTTVCG 119 (590)
Q Consensus 109 ~m~I~Vkt~~G 119 (590)
.-.-=||+..+
T Consensus 92 p~~~p~~~~~~ 102 (118)
T 2daf_A 92 PDLYPVRRIDG 102 (118)
T ss_dssp TTTSCCCCCCS
T ss_pred CccCcceeccC
Confidence 54434444333
No 145
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.20 E-value=1.4e-12 Score=126.11 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=0.4
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m 110 (590)
|+|+| +++|++++|+|++++||.+||.+|+..+|+|+++|+|+|+|++|+ |+.+|+ ++++|||+++++++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~Le-D~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-NTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECC-CCCccc-----CCCEEEEEEecCCCc
Confidence 89999 899999999999999999999999999999999999999999998 889998 899999999998874
No 146
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=6.8e-11 Score=105.58 Aligned_cols=73 Identities=8% Similarity=0.125 Sum_probs=66.7
Q ss_pred ccceee-eccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 110 QAITVT-TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 110 m~I~Vk-t~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
+.|.|+ +..++.+.+.++++.||.+||++++...++| ++.|+|+|+|+.|+|+.||.+|+|++|.+|||+++.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP--HSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC--TTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC--hHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 455555 4567899999999999999999999999988 999999999999999999999999999999999874
No 147
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.17 E-value=3.9e-11 Score=102.02 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=60.9
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE-------CCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-------DGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif-------~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
...+.+.+.+++++||.+||++|+.++|+| +++|+|+| .|+.|+|+++|++|+|++|++|||+-+.+
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 445667899999999999999999999998 99999997 48899999999999999999999987654
No 148
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=3.3e-11 Score=102.84 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCEEEEE-EeCCeEE--EE-EecCCCCHHHHHHHHHHh-hCCCccceEEEEc--CcccccCCccccccCcccccceeE
Q 007773 32 DSILIFL-SVGGSVI--PM-RVMESDSIASVKLRIQSY-NGFFVKKQKLVFE--GRELARSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 32 ~sM~I~V-tl~G~t~--~l-~V~~sdTV~~LK~kIq~~-~Gip~~~QrLvf~--Gk~L~~D~~tL~dygI~~gstL~L 102 (590)
..|+|+| ++.|+.+ .+ +|.|++||.+||.+|++. .|+++++|+|+|. |+.|. |+.+|++|+|+++++|++
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~-D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK-DEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCC-TTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcC-CCCCHHHcCCCCCCEEEE
Confidence 4599999 8887664 68 999999999999999994 8999999999987 99997 899999999999999775
No 149
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.17 E-value=4e-11 Score=124.09 Aligned_cols=76 Identities=37% Similarity=0.648 Sum_probs=70.2
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs 107 (590)
...|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|++|. |+.+|++|+|+++++|||++|++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~-D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence 57899999 678999999999999999999999999999999999999999997 89999999999999999998863
No 150
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=4.1e-11 Score=104.72 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=67.6
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE--CCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif--~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
.|.+++++.+|+++.++|++++||.+||++|++++|+| +++|+|+| .|+ |+|+++|++|+|+.+++|||++..-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 47788888999999999999999999999999999998 99999996 666 9999999999999999999987644
No 151
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=3.3e-11 Score=102.81 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=64.0
Q ss_pred cccceeeeccceee--EE-EeecCCcHHHHHHHHHHh-cCCCCCCCcEEEEEC--CEEcCCCCcccccCCCCCCEEEE
Q 007773 109 LQAITVTTVCGKVF--EF-HVERGRNVGYVKQQIAKK-GREFVDLKNQELICD--GEELEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~--~i-~Vd~s~TV~~LK~kI~~~-~gi~~~~~~Q~Lif~--Gk~LeD~~tL~dy~I~~gsvI~L 180 (590)
.|+|+|++..|+++ .+ +|++++||.+||++|+++ .+++ +++|+|+|. |+.|+|+++|++|+|+++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 38999999998876 48 999999999999999995 7887 999999976 99999999999999999999886
No 152
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.13 E-value=1.1e-10 Score=101.02 Aligned_cols=72 Identities=10% Similarity=0.168 Sum_probs=62.9
Q ss_pred ccccceeeeccc--eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC--CE---Ec-CCCCcccccCCCCCCEEE
Q 007773 108 DLQAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD--GE---EL-EDQRLITDICKRNEAVIH 179 (590)
Q Consensus 108 d~m~I~Vkt~~G--k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~--Gk---~L-eD~~tL~dy~I~~gsvI~ 179 (590)
+.++|+|++..+ +.++++|++++||.+||++|+.++|+| +++|+|+|. |+ .| +|.++|++|+|++|++|+
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 446677776544 588999999999999999999999998 999999997 45 45 999999999999999999
Q ss_pred EE
Q 007773 180 LL 181 (590)
Q Consensus 180 L~ 181 (590)
|+
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 153
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.13 E-value=4.3e-11 Score=126.92 Aligned_cols=79 Identities=23% Similarity=0.468 Sum_probs=70.0
Q ss_pred CCCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHH---hhCCCccceEEEEcCcccccCCccccccCcccccce-eEE
Q 007773 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS---YNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL-HLV 103 (590)
Q Consensus 29 ~~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~---~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL-~Lv 103 (590)
.++..|+|+| +++|+++.|+|.+++||.+||.+|+. +.|+++++|+|+|.|+.|. |+.+|.+|+|+++++| +|+
T Consensus 3 ~~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 3 LGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp ---CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred CCCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC-CcCCHHHcCCCCCCEEEEEE
Confidence 3567899999 78899999999999999999999999 6789999999999999997 8999999999999998 666
Q ss_pred eeecc
Q 007773 104 LRLSD 108 (590)
Q Consensus 104 lrLsd 108 (590)
.+..+
T Consensus 82 ~k~~~ 86 (368)
T 1oqy_A 82 TKTKA 86 (368)
T ss_dssp ECCCS
T ss_pred ecCCC
Confidence 66543
No 154
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.11 E-value=4.3e-11 Score=103.30 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=65.1
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
.|+|+|+ ..|+++.++|+++.||.+||++|++..|++ +++|+|+|+|+.|+| .+|.+|+|+++++|+|+.++
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP--PAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC--STTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 3778888 468999999999999999999999999988 999999999999955 49999999999999997654
No 155
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.10 E-value=1.5e-10 Score=119.77 Aligned_cols=76 Identities=32% Similarity=0.455 Sum_probs=72.0
Q ss_pred ecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
.++.|+|+||+.+|+.+.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|++|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 35679999999999999999999999999999999999988 99999999999999999999999999999999876
No 156
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.10 E-value=1.1e-10 Score=123.80 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=67.7
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHH---hcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEE-EEEee
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK---KGREFVDLKNQELICDGEELEDQRLITDICKRNEAVI-HLLVR 183 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~---~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI-~L~vr 183 (590)
..|+|+||+.+|+++.|+|++++||.+||++|+. +.|++ +++|+|+|+|+.|+|+++|.+|+|+++++| +|+.|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 3599999999999999999999999999999999 56677 999999999999999999999999999999 55444
No 157
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.09 E-value=8.9e-12 Score=120.44 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
|+|+|+|++|++++++|++++||.+||++|+..+|+| +++|+|+|+|++|+|+++|+ ++++|||++|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFE--IDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcC--hhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 7899999999999999999999999999999999998 99999999999999999998 8999999987
No 158
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.09 E-value=2.3e-10 Score=103.28 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=64.3
Q ss_pred CCCEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC---c---ccccCCccccccCcccccceeE
Q 007773 31 NDSILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---R---ELARSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 31 ~~sM~I~Vtl~G~--t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G---k---~L~~D~~tL~dygI~~gstL~L 102 (590)
...|.|+|+..+. .+.+++.+++||++||.+|+.++|+|+.+|+|+|.| + .|.+|+.+|.+|||++|++|||
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 3568888855444 689999999999999999999999999999999987 4 3434899999999999999998
Q ss_pred Ee
Q 007773 103 VL 104 (590)
Q Consensus 103 vl 104 (590)
+.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 159
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.09 E-value=2e-10 Score=99.02 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=63.2
Q ss_pred CCEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC---cc---cccCCccccccCcccccceeEE
Q 007773 32 DSILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---RE---LARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 32 ~sM~I~Vtl~G~--t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G---k~---L~~D~~tL~dygI~~gstL~Lv 103 (590)
..+.|+|+..+. .+.++|.+++||++||.+|+.++|+|+++|+|+|.| +. |.+|+.+|.+|||++|++||++
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 348888865554 799999999999999999999999999999999987 43 4348999999999999999986
Q ss_pred e
Q 007773 104 L 104 (590)
Q Consensus 104 l 104 (590)
-
T Consensus 86 d 86 (95)
T 1v6e_A 86 D 86 (95)
T ss_dssp C
T ss_pred E
Confidence 4
No 160
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.07 E-value=1e-10 Score=103.10 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCCEEEEE-EeCCeEEEEEec-CCCCHHHHHHHHHHhhCCCccceEEEEcCc-----------cc---ccCCccccccCc
Q 007773 31 NDSILIFL-SVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGR-----------EL---ARSNSRVRDYGL 94 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~-~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk-----------~L---~~D~~tL~dygI 94 (590)
.+.|+|+| +.+|.. .++|+ +++||.+||.+|+.++|+|+++|+|+|.|+ .| .+|+.+|.+|||
T Consensus 5 ~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp CCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred CCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 35699999 788866 79999 999999999999999999999999999988 44 348999999999
Q ss_pred ccccceeEEee
Q 007773 95 ADGNVLHLVLR 105 (590)
Q Consensus 95 ~~gstL~Lvlr 105 (590)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998765
No 161
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.06 E-value=3e-10 Score=98.14 Aligned_cols=78 Identities=13% Similarity=0.298 Sum_probs=73.8
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.+.|+|+| +.+|+.+.+.|.+++++..|+.+++++.|+++.+|+|+|+|+.|. ++.|+++|+++++++|++++++.++
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 56799999 789999999999999999999999999999999999999999997 8899999999999999999999877
No 162
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.03 E-value=2e-10 Score=101.24 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=67.5
Q ss_pred ccceeeeccceeeEEEee-cCCcHHHHHHHHHHhcCCCCCCCcEEEEECCE-----------E----cCCCCcccccCCC
Q 007773 110 QAITVTTVCGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGE-----------E----LEDQRLITDICKR 173 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd-~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk-----------~----LeD~~tL~dy~I~ 173 (590)
|.|.||+.+|+. .++|+ +++||.+||++|+.+++++ +++|+|+|.|+ . ++|+++|++|+|+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcC--cccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 889999999976 79999 9999999999999999988 99999999888 4 5899999999999
Q ss_pred CCCEEEEEeecCCC
Q 007773 174 NEAVIHLLVRKSAK 187 (590)
Q Consensus 174 ~gsvI~L~vrks~k 187 (590)
+|++|||+......
T Consensus 85 ~G~~L~l~~~~~~~ 98 (107)
T 1wf9_A 85 HGSMVYLAYEGERT 98 (107)
T ss_dssp TTCEEECCCSSCCC
T ss_pred CCCEEEEEeCCCCc
Confidence 99999997664433
No 163
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.02 E-value=3.6e-10 Score=98.20 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=61.2
Q ss_pred ccceeeecc--ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC---EE----cCCCCcccccCCCCCCEEEE
Q 007773 110 QAITVTTVC--GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EE----LEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 110 m~I~Vkt~~--Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G---k~----LeD~~tL~dy~I~~gsvI~L 180 (590)
+.|+|++.. ++.++++|++++||.+||++|+.++|+| +++|+|+|.| +. ++|.++|++|+|++|++|||
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 445555433 3578899999999999999999999998 9999999988 33 59999999999999999999
Q ss_pred Eee
Q 007773 181 LVR 183 (590)
Q Consensus 181 ~vr 183 (590)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
No 164
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=1.1e-09 Score=94.66 Aligned_cols=76 Identities=13% Similarity=0.268 Sum_probs=71.6
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
..|+|.|++.+|+++.++|.+++++..|++.++++.|++ +++++|+|+|+.|.++.|..+|+++++++|+++++..
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 458899999999999999999999999999999999988 8999999999999999999999999999999998743
No 165
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.93 E-value=1.3e-09 Score=93.83 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=61.3
Q ss_pred ccceeeeccc-eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC---EE----cCCCCcccccCCCCCCEEEEE
Q 007773 110 QAITVTTVCG-KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EE----LEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~G-k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G---k~----LeD~~tL~dy~I~~gsvI~L~ 181 (590)
+.|.|+.... ..+.++|++++||.+||++|+.+.|+| +++|+|+|.| +. ++|.++|++|+|+++++||++
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 4455654333 268899999999999999999999998 9999999986 43 589999999999999999997
Q ss_pred eec
Q 007773 182 VRK 184 (590)
Q Consensus 182 vrk 184 (590)
...
T Consensus 86 d~~ 88 (95)
T 1v6e_A 86 DHS 88 (95)
T ss_dssp CCS
T ss_pred ECC
Confidence 543
No 166
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.90 E-value=1.4e-09 Score=113.42 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=67.8
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE---EcCcccccCCccccccCcccccceeEEeee
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv---f~Gk~L~~D~~tL~dygI~~gstL~LvlrL 106 (590)
.+.|.|+|+.+|++++++|++++||++||.+|++++|+|+++|+|+ |.|++|. |+.+|++|||++|++|+|+...
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~-D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA-DNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC-TTSBTTSSCCC--CEEEEECCC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC-ccccHHHcCCCCCCEEEEEccc
Confidence 4678999988999999999999999999999999999999999999 8999998 8999999999999999987644
No 167
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=3.3e-09 Score=91.10 Aligned_cols=78 Identities=13% Similarity=0.298 Sum_probs=73.2
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.+.|+|.| +.+|+.+.+.|.+++++..|+.+.+++.|+++.+++|+|+|+.|. ++.|.++|++++|++|++++.+.++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 36799999 789999999999999999999999999999999999999999997 8899999999999999999988776
No 168
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.88 E-value=3.7e-09 Score=95.25 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=63.9
Q ss_pred ccccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC---E---E-cCCCCcccccCCCCCCEEE
Q 007773 108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---E---E-LEDQRLITDICKRNEAVIH 179 (590)
Q Consensus 108 d~m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G---k---~-LeD~~tL~dy~I~~gsvI~ 179 (590)
+.+.|+|+...+. .+.+++++++||.+||++|+...|+| +++|+|+|.| + . ++|.++|++|+|++|++||
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 3456667654432 68899999999999999999999998 9999999977 3 3 4899999999999999999
Q ss_pred EEeecC
Q 007773 180 LLVRKS 185 (590)
Q Consensus 180 L~vrks 185 (590)
|+...+
T Consensus 83 vvd~~p 88 (122)
T 1t0y_A 83 AVDVTG 88 (122)
T ss_dssp EEECTT
T ss_pred EEeCCC
Confidence 987543
No 169
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=7.1e-09 Score=88.99 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=71.9
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
..|+|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|+++++..+
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC--STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 457899999999999999999999999999999999988 89999999999999999999999999999999887543
No 170
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.87 E-value=5.2e-09 Score=85.68 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=67.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
|+|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|.++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6788999999999999999999999999999999988 899999999999999999999999999999985
No 171
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.85 E-value=6.7e-09 Score=89.41 Aligned_cols=78 Identities=13% Similarity=0.298 Sum_probs=71.5
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|.|.| ..+|+.+.+.|.+++++..|+...+++.|+++.+++|+|+|+.|. ++.|..+|++.+|++|++++++.|+
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeeccCC
Confidence 56799999 678999999999999999999999999999999999999999997 8999999999999999999987664
No 172
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.82 E-value=2.7e-09 Score=90.11 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=61.4
Q ss_pred EEEEE-EeCCeEEEEE-ecCCCCHHHHHHHHHHhhCCCccceEEEEc--Ccccc--cCCccccccCcccccceeEEee
Q 007773 34 ILIFL-SVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA--RSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~--Gk~L~--~D~~tL~dygI~~gstL~Lvlr 105 (590)
|+|+| +.+|+. .+. +++++||.+||.+|+++.|+++++|+|+|+ ++.|. +++.+|++|||.+|++|++.-.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 78999 777755 477 999999999999999999999999999997 47773 3678999999999999988643
No 173
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.82 E-value=3.6e-09 Score=89.30 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=62.6
Q ss_pred ccceeeeccceeeEEE-eecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC--CEEcC---CCCcccccCCCCCCEEEEEee
Q 007773 110 QAITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICD--GEELE---DQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~-Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~--Gk~Le---D~~tL~dy~I~~gsvI~L~vr 183 (590)
|+|.||+.+|+.. ++ +++++||.+||++|+++.|++ +++|+|+|+ ++.|+ |+.+|++|++.+|++|++.-.
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 7899999999654 77 999999999999999999988 899999997 47774 789999999999999997543
No 174
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.80 E-value=2e-08 Score=88.56 Aligned_cols=78 Identities=10% Similarity=0.221 Sum_probs=71.3
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
....|+|.| + +|+.+.+.|.+++++..|+.+.+++.|+++.+++|+|+|+.|. ++.|.++|++++|++|++++++.|
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEeeccc
Confidence 357799999 7 9999999999999999999999999999999999999999997 889999999999999999998765
Q ss_pred c
Q 007773 109 L 109 (590)
Q Consensus 109 ~ 109 (590)
+
T Consensus 106 G 106 (106)
T 2eke_C 106 G 106 (106)
T ss_dssp -
T ss_pred C
Confidence 4
No 175
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.80 E-value=1.3e-08 Score=84.90 Aligned_cols=73 Identities=12% Similarity=0.278 Sum_probs=68.5
Q ss_pred CCCCEEEEE-EeCCe-EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773 30 SNDSILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~-t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv 103 (590)
..+.|+|.| ..+|+ .+.+.|.+++++..|+...+++.|+++.+++|+|.|+.|. ++.|.++|++++|++|++.
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 467899999 78895 8999999999999999999999999999999999999997 8999999999999999975
No 176
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.80 E-value=1.1e-08 Score=83.82 Aligned_cols=69 Identities=12% Similarity=0.318 Sum_probs=66.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv 103 (590)
|+|.| +.+|+.+.+.|.+++++..|+.+.+++.|+++.+++|+|+|+.|. ++.|.++|++++|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence 78999 689999999999999999999999999999999999999999997 8899999999999999986
No 177
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.78 E-value=9.3e-09 Score=90.41 Aligned_cols=78 Identities=13% Similarity=0.300 Sum_probs=73.7
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.+.|+|.| ..+|+.+.+.|.+++++..|+...+++.|+++.+++|+|.|+.|. ++.|..+|++.++++|++++++.++
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 57899999 789999999999999999999999999999999999999999997 8899999999999999999988765
No 178
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.78 E-value=1.7e-08 Score=84.24 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=67.8
Q ss_pred ccccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 108 d~m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
..|.|.|++.+|+ .+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|++.
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS--GHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT--TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4588999999996 89999999999999999999999988 899999999999999999999999999999974
No 179
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.77 E-value=2e-08 Score=86.36 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=70.6
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
..|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|+++++.
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 457888999999999999999999999999999999998 899999999999999999999999999999998764
No 180
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.75 E-value=1.1e-08 Score=90.86 Aligned_cols=79 Identities=10% Similarity=0.247 Sum_probs=74.2
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
...|+|.| +.+|+.+.+.|.+++++..|+.+.+++.|+++.+|+|+|.|+.|. ++.|..+|++.++++|++++.+.++
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~-~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPID-ETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCC-SSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEcccCc
Confidence 57799999 789999999999999999999999999999999999999999998 8899999999999999999998876
Q ss_pred c
Q 007773 110 Q 110 (590)
Q Consensus 110 m 110 (590)
+
T Consensus 103 ~ 103 (110)
T 2k8h_A 103 L 103 (110)
T ss_dssp -
T ss_pred c
Confidence 5
No 181
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.74 E-value=8e-09 Score=107.71 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=66.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE---ECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li---f~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
+.|+|+. +|+++.++|++++||.+||++|++++|+| +++|+|+ |+|+.|+|..+|++|+|++|++|+|+-...+
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 6778884 79999999999999999999999999998 9999999 8999999999999999999999999866555
Q ss_pred Cc
Q 007773 187 KV 188 (590)
Q Consensus 187 kv 188 (590)
.+
T Consensus 83 ~i 84 (320)
T 3shq_A 83 DI 84 (320)
T ss_dssp --
T ss_pred hh
Confidence 43
No 182
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.71 E-value=2.2e-08 Score=86.39 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=64.9
Q ss_pred CCCEEEEEE----eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC-------cccccCCccccccCcccccc
Q 007773 31 NDSILIFLS----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-------RELARSNSRVRDYGLADGNV 99 (590)
Q Consensus 31 ~~sM~I~Vt----l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G-------k~L~~D~~tL~dygI~~gst 99 (590)
...+.|+|+ .+|..+..++.++.||.+||.+|+..+|+|+.+|+|+|.+ ..|.+|..+|.+|+|.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 455777774 4678999999999999999999999999999999999874 23667899999999999999
Q ss_pred eeEEee
Q 007773 100 LHLVLR 105 (590)
Q Consensus 100 L~Lvlr 105 (590)
||+...
T Consensus 87 I~V~d~ 92 (97)
T 1wjn_A 87 LLVRWS 92 (97)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 998753
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.69 E-value=4.3e-08 Score=86.46 Aligned_cols=74 Identities=11% Similarity=0.203 Sum_probs=70.0
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
..|+|.|++ +|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|+++++.
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC--cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 458899999 99999999999999999999999999988 899999999999999999999999999999998764
No 184
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.67 E-value=2.2e-08 Score=88.05 Aligned_cols=76 Identities=13% Similarity=0.268 Sum_probs=71.0
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
..|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|+++++..
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 457889999999999999999999999999999999998 8999999999999999999999999999999987643
No 185
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.62 E-value=2.9e-08 Score=88.07 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=72.2
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
...|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|++++....
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS--RNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 3458899999999999999999999999999999999998 89999999999999999999999999999999876543
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.51 E-value=2.5e-07 Score=79.73 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=61.2
Q ss_pred ccceeee---ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC-------EEc-CCCCcccccCCCCCCEE
Q 007773 110 QAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-------EEL-EDQRLITDICKRNEAVI 178 (590)
Q Consensus 110 m~I~Vkt---~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G-------k~L-eD~~tL~dy~I~~gsvI 178 (590)
++|.|+. .+|+.+...+..+.||.+||.+|+..+|++ +..|+|+|.+ ..| +|.++|++|++++|++|
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 4454543 467888999999999999999999999998 9999999873 235 78999999999999999
Q ss_pred EEEeec
Q 007773 179 HLLVRK 184 (590)
Q Consensus 179 ~L~vrk 184 (590)
|+....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 997643
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.25 E-value=3.8e-06 Score=74.94 Aligned_cols=75 Identities=12% Similarity=0.237 Sum_probs=69.7
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
+.+.|.|++.+|+.+.+.|.++.++..|+...+++.|++ +++++++|+|+.|.+..|..+++++++++|++++..
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--TTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC--hhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 347788888899999999999999999999999999987 999999999999999999999999999999998754
No 188
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=98.13 E-value=4.8e-06 Score=86.89 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=88.9
Q ss_pred cccCCCCCcEEEEEeCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcCCCccCCCchhhhhhhhhhccCCCCccccc
Q 007773 273 IPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLH 352 (590)
Q Consensus 273 ~~~~~Gs~Gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~g~~~g~~~g~g~~rEvAAylLD~~~~~~~~~~ 352 (590)
.++..|++|.|||... + ...|.|+.. + -..|+=||.|-+
T Consensus 75 ~~s~~Gstgvff~~td-~--~~~VVK~s~------------------------~-----l~~E~l~s~LA~--------- 113 (342)
T 1cja_A 75 ERSEKGTEGLFFVETE-S--GVFIVKRST------------------------N-----IESETFCSLLCM--------- 113 (342)
T ss_dssp EECCSTTSCEEEEEES-S--CEEEEECCT------------------------T-----HHHHHHHHHHHH---------
T ss_pred EeccCCCCCeEEEEeC-C--CEEEEeCcH------------------------H-----HHHHHHHHHHHH---------
Confidence 4678999999999973 3 378889651 1 378999998874
Q ss_pred ccccCCCCCCceEEEEecccCcc-C------CCCCCC--CCCCc-cceEEeecccccCCcccCCC----CCCChh---hh
Q 007773 353 DEERGFAGVPPTVMVRCLHKGFN-H------PNGYKH--DLENV-KIGSLQMFVENVGSCEEMGP----RAFPVD---EV 415 (590)
Q Consensus 353 ~~~~gf~~VP~T~lv~~~~~~f~-~------~~~~~~--~~~~~-k~GSlQ~fv~~~~~~~~~~~----~~f~~~---ev 415 (590)
.+|. -+|...+++...+-|. + -+.... ..+.. ...=++.|+++..-. ++.. ..|..+ ++
T Consensus 114 --~LGl-piP~~Riv~~~~~E~~e~~~~L~~~~~~~~~l~~l~~~~~~l~meyv~G~~L~-e~~~~~~~~~f~~~~~k~L 189 (342)
T 1cja_A 114 --RLGL-HAPKVRVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGITLN-KLTTTSAPEVLTKSTMQQL 189 (342)
T ss_dssp --HHTC-CCCCEEEEESSSHHHHHHHHHHHHHCSSSCHHHHHTTCSEEEEEECCCEEEST-TCCSSSHHHHSCHHHHHHH
T ss_pred --HhCC-CCCCeeEEeeCcHHHHHHHHHHHHhhhhhHHHHHhhcccceehhhhcCCCccc-cchhhhhhhhcCHHHHHhh
Confidence 6786 7899999987643220 0 000000 00001 122457888764311 1111 224333 34
Q ss_pred hheeeeeeeeecCCCC------CC---cEEEeccCCCceEEEeeccCCcCCCC
Q 007773 416 HKISVLDIRLANTDRH------AG---NILVSKDEGGQIKLVPIDHGYCLPYS 459 (590)
Q Consensus 416 ~ki~ilD~~i~N~DR~------~g---NiLv~~~~~g~~~l~pIDhGl~fp~~ 459 (590)
-||.+||+.++|.||- .| |||+..+ ++ ++++|||+.||-+.
T Consensus 190 G~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~-n~--~~~~IDhn~af~~~ 239 (342)
T 1cja_A 190 GSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSER-GA--TVVPIDSKIIPLDA 239 (342)
T ss_dssp HHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESB-TT--CEEECSCCCCCCCS
T ss_pred chhheehhhhcCCccCcccccCCCChhheEEeCC-CC--eEEEEcCCccccCC
Confidence 4799999999999997 34 6788875 23 69999999998865
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.11 E-value=8.4e-06 Score=79.40 Aligned_cols=78 Identities=12% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.+.|+|.|..+|+.+.+.|.+++++..|+...+++.|++..+++++|+|+.|. ++.|.+++++.+|++|++++.+.++
T Consensus 27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCcC
Confidence 57799999779999999999999999999999999999999999999999998 8999999999999999999998654
No 190
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.09 E-value=7.6e-06 Score=73.00 Aligned_cols=74 Identities=18% Similarity=0.338 Sum_probs=68.8
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
.+.|+|.| ..+|+.+.+.|.+++++..|+...+++.|+++.+++++|.|+.|. ++.|.+++++.+|++|++++.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~-~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECC-TTCCTTTTTCCTTCEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECC-CCCCHHHcCCCCCCEEEEEee
Confidence 36789999 678999999999999999999999999999999999999999997 889999999999999999875
No 191
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.02 E-value=8.7e-06 Score=78.37 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=74.2
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m 110 (590)
.+.|.|.|..+|+.+.+.|.+++++..|+....++.|+++.+++++|+|+.|. ++.|..++++.+|++|++++...++.
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 46688999778999999999999999999999999999999999999999998 89999999999999999999998774
No 192
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.88 E-value=2.7e-05 Score=75.83 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=69.8
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~ 186 (590)
...++|.|+ .+|+.+.+.|.+++++..|++..+++.|++ +.+++++|+|+.|.+..|..++++++|++|++++..-+
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 344677776 489999999999999999999999999988 99999999999999999999999999999999987544
No 193
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.79 E-value=3.3e-05 Score=74.40 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=69.7
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k 187 (590)
+.+.|.|+ .+|+.+.+.|.+++++..|++..+++.|++ +.+++++|+|+.|.+..|..+++++++++|++++..-..
T Consensus 56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCC--GGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCC--cccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 34677776 489999999999999999999999999988 899999999999999999999999999999998875544
No 194
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.70 E-value=5.2e-05 Score=65.25 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=48.7
Q ss_pred EEEEE-E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCccccc-CCccccccC
Q 007773 34 ILIFL-S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELAR-SNSRVRDYG 93 (590)
Q Consensus 34 M~I~V-t-l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~-D~~tL~dyg 93 (590)
.-|+| . ..+..+.+.|.+++||..+|++|++++|||+.+|+|+|.|+.|.= .+..-..|.
T Consensus 13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred eeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence 55667 4 466899999999999999999999999999999999999977541 344455554
No 195
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.69 E-value=5.5e-06 Score=80.75 Aligned_cols=79 Identities=11% Similarity=0.204 Sum_probs=1.2
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m 110 (590)
.+.|.|.|..+|+.+.+.|.+++.+..|+....++.|+++.+++++|+|+.|. ++.|.+++++++|++|++++...|+.
T Consensus 19 ~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~-dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecC-CCCCHHHcCCCCCCEEEEEecccCCc
Confidence 57799999778999999999999999999999999999999999999999998 89999999999999999999888774
No 196
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.59 E-value=3.8e-05 Score=64.10 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=58.7
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEE-----cCCCCcccccCCCCCCEEEEE
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-----LEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~-----LeD~~tL~dy~I~~gsvI~L~ 181 (590)
..|.|-||+.+| ++.++|++++|+.+|+++|++..+++ .+.|.|+++-.. +.++.+|+++++++|+.|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 347788888877 67788999999999999999999987 677777765554 347889999999999999863
No 197
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.57 E-value=4.7e-05 Score=63.53 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=59.5
Q ss_pred CCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc-----cccCCccccccCcccccceeEE
Q 007773 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-----LARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 32 ~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-----L~~D~~tL~dygI~~gstL~Lv 103 (590)
+.|.|.|.....++.+++++++|+.+|+.+|+++.++++..|.++++-.. +. ++.+|+++||+.|++|.+.
T Consensus 3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~-~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITAS-SSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSC-CCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCC-CCCCHHHcCCCCCCEEEEe
Confidence 46888995555688899999999999999999999999999888766554 33 6789999999999999874
No 198
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.53 E-value=0.0037 Score=65.75 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=97.2
Q ss_pred CEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhC----CCccceEEEEc------CcccccCCccccccCcccccceeE
Q 007773 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNG----FFVKKQKLVFE------GRELARSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 33 sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~G----ip~~~QrLvf~------Gk~L~~D~~tL~dygI~~gstL~L 102 (590)
++.+.|.+.+.+-++.++|+.||.++-.+|.++.. .+.++--|... |+=|. ++++|..|+++++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeec
Confidence 45566655588999999999999999999988863 25666677763 23376 678999999999998876
Q ss_pred EeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC
Q 007773 103 VLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157 (590)
Q Consensus 103 vlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~ 157 (590)
..+. +.+.|...+|....+.|+.+.|+.++-+.|+...|+. ..+.-.|++.
T Consensus 82 ~~~~---~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~ 132 (371)
T 3ivf_A 82 RKKQ---RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT-NHDEYSLVRE 132 (371)
T ss_dssp EECE---EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS-CGGGEEEECC
T ss_pred cCce---eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CccccEEEEE
Confidence 5433 6788889999999999999999999999999999977 3667778764
No 199
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.45 E-value=0.00064 Score=56.27 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=63.2
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCC-cEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~-~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
+.+.+++.....+.+.|.++.+|..|-..-+.+.+++ ++ ..+|.|.|..|+.+.++.||.+++|+.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~--~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKIS--FHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCC--CCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCC--cCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4455566666779999999999999999999999998 77 99999999999999999999999999999864
No 200
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.40 E-value=2.3e-05 Score=76.40 Aligned_cols=81 Identities=10% Similarity=0.174 Sum_probs=0.8
Q ss_pred eecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 105 RLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 105 rLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
...+.|.|.| +.+|+.+.+.|.++++...|++..+++.|++ +++++++|+|+.+.+..|..++++++|++|+++...
T Consensus 17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 3345688888 7899999999999999999999999999988 899999999999999999999999999999999875
Q ss_pred CCCc
Q 007773 185 SAKV 188 (590)
Q Consensus 185 s~kv 188 (590)
.+..
T Consensus 94 ~GG~ 97 (227)
T 3v7o_A 94 IGGL 97 (227)
T ss_dssp --CC
T ss_pred cCCc
Confidence 5543
No 201
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.29 E-value=0.00087 Score=57.62 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=51.1
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEc--CCCCcccccC-CCCCCEEEEEe
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL--EDQRLITDIC-KRNEAVIHLLV 182 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~L--eD~~tL~dy~-I~~gsvI~L~v 182 (590)
..+..+.+.+++.+||..+|++|++++|++ +.+|+|+|.|+.| +..+.-..|. -..+..|.|+-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCC--HHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 456788999999999999999999999998 9999999999775 5555556665 34556666544
No 202
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.22 E-value=0.0011 Score=57.43 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=64.8
Q ss_pred ccccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 108 d~m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
+.+.|.|+..+|+ .+.+.|.++.+...|...-+++.|+. ++..+++|+|+.|....|..+++++++++|.+.
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS--GRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS--SSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3466777777784 78999999999999999999999987 889999999999999999999999999999864
No 203
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.15 E-value=0.002 Score=62.98 Aligned_cols=92 Identities=15% Similarity=0.251 Sum_probs=79.8
Q ss_pred CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
+.+.|.|.|.-+++.+.+.|..++++..|+...+++.|++..+++++|.|+.+. ++.+..+..+.++++|.+.....++
T Consensus 18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~-~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC-TTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc-CCCChHHhhhcccccchhhcccccc
Confidence 468899999448888999999999999999999999999999999999999998 8999999999999999999988876
Q ss_pred ccceeeeccceeeE
Q 007773 110 QAITVTTVCGKVFE 123 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~ 123 (590)
.. ++.+.+|-.+.
T Consensus 97 ~t-~~~~~sGl~~~ 109 (209)
T 3uf8_A 97 ST-VVTTESGLKYE 109 (209)
T ss_dssp CC-CEECTTSCEEE
T ss_pred cc-ccCCCCceEEE
Confidence 53 34455664443
No 204
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.12 E-value=0.0018 Score=63.36 Aligned_cols=82 Identities=10% Similarity=0.179 Sum_probs=71.3
Q ss_pred eeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 104 LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 104 lrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
+...+.+.|.|++ +|+.+.+.|.++++...|++..+++.|++ +++++++|.|+.+.+..+..++.++++++|++...
T Consensus 16 ~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp --CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred eCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCC--hheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 3345557777876 78889999999999999999999999988 99999999999999999999999999999999877
Q ss_pred cCCCc
Q 007773 184 KSAKV 188 (590)
Q Consensus 184 ks~kv 188 (590)
+-...
T Consensus 93 q~Gg~ 97 (209)
T 3uf8_A 93 QIGGS 97 (209)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 55533
No 205
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.05 E-value=0.0022 Score=53.03 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=61.1
Q ss_pred EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCcc-ceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
+.+.+ .....-+.+.|.++.+|.++-..-..+.||+++ ..+|.|.|..|. .+.++++|++.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeeeee
Confidence 44444 334456889999999999999999999999999 899999999997 99999999999999998875
No 206
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.95 E-value=0.0028 Score=54.79 Aligned_cols=72 Identities=11% Similarity=0.289 Sum_probs=65.5
Q ss_pred CCCEEEEE-EeCCe-EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773 31 NDSILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 31 ~~sM~I~V-tl~G~-t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv 103 (590)
.+.|.|.| ..+|+ .+.+.|.++.++..|...-.++.|+++...+++|.|..|. .+.|..++++.+|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~-~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS-GRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC-SCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 56788888 56774 8999999999999999999999999999999999999997 8899999999999999764
No 207
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.92 E-value=0.00012 Score=77.03 Aligned_cols=83 Identities=11% Similarity=0.192 Sum_probs=3.5
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m 110 (590)
.+.|.|.|.-+|+.+.+.|.+++++..|+....++.|+++.+++++|+|+.|. ++.|.+++++++|++|+++....++|
T Consensus 19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~-~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC-CCCChHHcCCCccchhhhhhccCchH
Confidence 56788888337889999999999999999999999999999999999999998 88999999999999999999999998
Q ss_pred ccee
Q 007773 111 AITV 114 (590)
Q Consensus 111 ~I~V 114 (590)
..+.
T Consensus 98 ~~Yl 101 (360)
T 3ix6_A 98 RTYL 101 (360)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 208
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.83 E-value=0.004 Score=53.48 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=66.8
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
+.|.|+ ..|..+.|.+.++.....|....+++.|+. ++..++.|+|..+.+..|-.+++++++++|..++-+|
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~~ 94 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVS--PSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTS 94 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSC--GGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECCC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEecC
Confidence 566677 468899999999999999999999999988 9999999999999999999999999999999987665
No 209
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.78 E-value=0.0037 Score=53.19 Aligned_cols=76 Identities=12% Similarity=0.013 Sum_probs=67.8
Q ss_pred cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
.++|.|+|-..+++..++.|.++.++.++-+.-++++|+. +++..|.|+++.|+-...+.-.|+.+++.+.|+-..
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--hhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 4678999999999999999999999999999999999987 899999999999998888998999999999997553
No 210
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.73 E-value=0.0099 Score=51.03 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=68.6
Q ss_pred CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
..+.|.|.|.-.|....+.|..++....|...-.++.|+++...++.|.|..+. ++.|-++.++.++++|.+++
T Consensus 18 ~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~-~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 18 TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS-PTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC-TTSCHHHHTCCSSCEEEEEE
T ss_pred CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC-CCCCHhHcCCCCCCEEEEEE
Confidence 356699999768899999999999999999999999999999999999999997 89999999999999998875
No 211
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.47 E-value=0.00045 Score=72.71 Aligned_cols=81 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred eeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 104 LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 104 lrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
....+.+.|.|++ +|+.+.+.|.++++...|++..+++.|++ ++++++.|+|+.+.++.|..++++++|++|+++..
T Consensus 16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCC--cceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 3345567788886 68889999999999999999999999987 99999999999999999999999999999999877
Q ss_pred cCCC
Q 007773 184 KSAK 187 (590)
Q Consensus 184 ks~k 187 (590)
..+.
T Consensus 93 Q~g~ 96 (360)
T 3ix6_A 93 QIGG 96 (360)
T ss_dssp ----
T ss_pred cCch
Confidence 5544
No 212
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.32 E-value=0.0044 Score=56.12 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=58.0
Q ss_pred cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE----------------------------------
Q 007773 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---------------------------------- 156 (590)
Q Consensus 111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif---------------------------------- 156 (590)
.+.|+..+|...++.|+.+.+|..++..|+.+.|+. ..++..|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~-n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT-NHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCC-CCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCC-CcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 588999999999999999999999999999999987 233333432
Q ss_pred ----CCEEcCCCCcccccCCCCCCEEEEE
Q 007773 157 ----DGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 157 ----~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
++..|++.++|.++||.++++|.|.
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 2367888999999999999997653
No 213
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=96.23 E-value=0.00082 Score=69.97 Aligned_cols=46 Identities=33% Similarity=0.408 Sum_probs=36.8
Q ss_pred hhhhheeeeeeeeecCCCCCCcEEEeccCC-CceEEEee-ccCCcCCC
Q 007773 413 DEVHKISVLDIRLANTDRHAGNILVSKDEG-GQIKLVPI-DHGYCLPY 458 (590)
Q Consensus 413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~-g~~~l~pI-DhGl~fp~ 458 (590)
+++-++.+||++|+|+|||++||=+-.+.+ |.+.|.|+ |||.++..
T Consensus 139 ~~~~~~~vfn~LIgN~D~H~kN~s~l~~~~tg~~~LAP~YD~~~s~~~ 186 (325)
T 3akj_A 139 CFFWDMFVADTLLGNFDRHNGNWGFLRASNSKEYQIAPIFDCGSCLYP 186 (325)
T ss_dssp HHHHHHHHHHHHHTCSCCCGGGCEEEEESSSSCEEECCBCCCTTSSCT
T ss_pred HHHHHHHHhhHhhcCCCCCCcCeEEEEECCCCCEEecCcccccccccc
Confidence 457799999999999999999974433333 67899997 99988753
No 214
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.19 E-value=0.00079 Score=71.48 Aligned_cols=84 Identities=11% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m 110 (590)
.+.|.|.|.-+++.+.+.|..+++...|+....++.|+++.+++++|+|+.|. ++.|.+++++.+|++|++++...++.
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~-~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEeeeeecccccc
Confidence 46678888327788999999999999999999999999999999999999998 89999999999999999999888776
Q ss_pred cceee
Q 007773 111 AITVT 115 (590)
Q Consensus 111 ~I~Vk 115 (590)
..+++
T Consensus 107 n~~~~ 111 (389)
T 4da1_A 107 NLYFQ 111 (389)
T ss_dssp -----
T ss_pred cccee
Confidence 65554
No 215
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.72 E-value=0.015 Score=49.41 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=65.4
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
...|.+.| ..+++..++.|.|+.++.+|-+..-+++|+.+++-.|.|+++.|. -+..++-.|+-+|+.+.|+..
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD-LSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc-ccceeEecCCCCCCEEEEEEc
Confidence 45678888 678999999999999999999999999999999889999999996 789999999999999998754
No 216
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.70 E-value=0.0018 Score=68.75 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (590)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k 187 (590)
+.+.|.|++ +|..+.+.|.++++...|++..+++.|++ +.+++++|+|+.|.+..|..+++++++++|++++..-..
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 456777776 78888999999999999999999999988 999999999999999999999999999999998765443
No 217
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.64 E-value=0.02 Score=47.88 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=56.6
Q ss_pred CCEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCcc-----ceEEEEcCcccccCCccccccCcccccceeE
Q 007773 32 DSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVK-----KQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (590)
Q Consensus 32 ~sM~I~Vtl---~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~-----~QrLvf~Gk~L~~D~~tL~dygI~~gstL~L 102 (590)
..|.|++.+ .++++.+++....||..|+..+.+..+++.. ..++.-.+..|. ++.+|++|+|.+|+.+.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~-~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS-GECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE-TTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc-CCCEEeeCCcCCCCEEEE
Confidence 345666654 7899999999999999999999999987652 234555677787 889999999999998864
No 218
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.38 E-value=0.0098 Score=53.85 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=56.0
Q ss_pred EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCcc-------------------------------------ceEEE
Q 007773 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-------------------------------------KQKLV 76 (590)
Q Consensus 35 ~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~-------------------------------------~QrLv 76 (590)
.+.| .++|+..++.|+.+.||.+++..|..+.||+.. +|+|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 5777 679999999999999999999999999999855 34442
Q ss_pred E--cCcccccCCccccccCcccccceeEEee
Q 007773 77 F--EGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 77 f--~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
. .+.-|. ++.+|.++||.++++|.|.-+
T Consensus 93 ~dd~~~WLD-~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLD-HGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEEC-SSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCccc-CCCcHHHcCCCCCCEEEEEEE
Confidence 2 113354 789999999999999877543
No 219
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.22 E-value=0.044 Score=45.72 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=55.7
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCC---CcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---KNQELICDGEELEDQRLITDICKRNEAVIHL 180 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~---~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L 180 (590)
..++++-+.+....||..|++-+.+.+++..+. .+.++.-.+..|.++..|.||++.+|+.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 478899999999999999999999999976432 2456777899999999999999999999875
No 220
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.36 E-value=0.095 Score=47.82 Aligned_cols=78 Identities=18% Similarity=0.362 Sum_probs=53.6
Q ss_pred CCCEEEEE-EeC------CeEEEEEecCCCCHHHHHHHHHHh--hCCCccc------eEEEE----cCcc-cccCC----
Q 007773 31 NDSILIFL-SVG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVKK------QKLVF----EGRE-LARSN---- 86 (590)
Q Consensus 31 ~~sM~I~V-tl~------G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~~~------QrLvf----~Gk~-L~~D~---- 86 (590)
-.++.++| ... ...+++.|...|||.++|+||-.. .|+|..+ .-|-+ .|+. |.+.+
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 46788887 321 357999999999999999999887 4666543 23444 1332 44111
Q ss_pred --------ccccccCcccccceeEEeeecc
Q 007773 87 --------SRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 87 --------~tL~dygI~~gstL~LvlrLsd 108 (590)
.||+.|+|.+|+++-|+.+.+.
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~~~~ 131 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVPCLTK 131 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEEC---
T ss_pred ccCCceeecchhccCCCCCCEEEEEECCCc
Confidence 3899999999999999887654
No 221
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.08 E-value=0.22 Score=43.46 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=60.6
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc--cCCccccccCcccccceeEEe
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstL~Lvl 104 (590)
....+|.| ..+|+.+.-+...++||.+|..-|....+.+.....|+ |-.+.+. +.+.+|++.|+.+..+|.+..
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 56788999 56889999999999999999999999987766666676 5577776 347899999999888877654
No 222
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.69 E-value=0.23 Score=41.07 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=59.6
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc--cCCccccccCcccccceeEEe
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstL~Lvl 104 (590)
....+|.| ..+|+.+.-+...++||.+|..-|.. .+.+.....|+ |-.+.+. +.+.+|.+.|+.+..+|.+-.
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 46678888 56888888899999999999999998 67777777887 4477784 457899999999988887643
No 223
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.41 E-value=0.15 Score=44.94 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=50.3
Q ss_pred CCCEEEEE-Ee--CCeEEEEEecCCCCHHHHHHHHHHh--hCCCcc------ceEEEEc----CcccccCC---------
Q 007773 31 NDSILIFL-SV--GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVFE----GRELARSN--------- 86 (590)
Q Consensus 31 ~~sM~I~V-tl--~G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~~------~QrLvf~----Gk~L~~D~--------- 86 (590)
..++.++| .. ++..+.+.|...|||.++|+||-.. .|+|.. ...|-+. |+.|.+.+
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 35677777 32 3467899999999999999999876 466644 3346652 44454211
Q ss_pred ---ccccccCcccccceeEEee
Q 007773 87 ---SRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 87 ---~tL~dygI~~gstL~Lvlr 105 (590)
.||+.|+|.+|+++-|+.+
T Consensus 89 krLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEecchhhcCCCCCCEEEEEeC
Confidence 4789999999999988754
No 224
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=92.68 E-value=0.31 Score=40.29 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=53.5
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc---CCCCcccccCCCCCCEEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~L---eD~~tL~dy~I~~gsvI~L~ 181 (590)
.+|.||..+|+.+.-....++||.+|..-|.. .+.. .....|+ |-.+.| +...+|.+.++.+.++|.+-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 34566666777776677789999999999988 4444 6778888 557888 45789999999999998863
No 225
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=91.36 E-value=1.3 Score=50.40 Aligned_cols=140 Identities=20% Similarity=0.320 Sum_probs=81.0
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChH
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAE 491 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~ 491 (590)
.+--.+|.=|++.=.|||.+|||+.. +|+ ++-||=|.||-... . |. ..|| +++.++.+-....+
T Consensus 537 SlA~~Svv~YILGlGDRH~~NILid~--tG~--v~HIDFG~~f~~~p---~------pe-~VPFRLT~~mv~~mG~~g~e 602 (696)
T 2x6h_A 537 SCAGYCVITYLLGVGDRHLDNLLLTT--NGK--LFHIDFGYILGRDP---K------PM-PPPMKLSKEMVEAMGGISSE 602 (696)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEECT--TSC--EEECCCCSCTTCCS---S------SC-CCSSCCCHHHHHHTTSSSSH
T ss_pred HHHHHHHHHHHccCCCCCCcceEEeC--CCC--EEEEeehhhhccCC---C------Cc-CCCeecCHHHHHHhCCCCcc
Confidence 34557788899999999999999985 487 99999999996431 1 11 4554 55555444332221
Q ss_pred HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCC-CchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773 492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKD-ESVIEQIVREAQDAVLPGTSEDGFLES 570 (590)
Q Consensus 492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~-~s~le~~~~~a~~~~~~~~~~~~f~~~ 570 (590)
-...++.. -+..+++||-..-. +-.+-++|-+..+.. .+.=+..+..-++.+.++.+|+.-.+.
T Consensus 603 -g~~~Fr~~----c~~~~~~LR~~~~~----------il~ll~lml~~~lp~~~~~~~~~i~~l~~rf~l~lseeea~~~ 667 (696)
T 2x6h_A 603 -HHHEFRKQ----CYTAYLHLRRHANV----------MLNLFSLMVDATVPDIALEPDKAVKKVEENLQLGLTDEEAVQH 667 (696)
T ss_dssp -HHHHHHHH----HHHHHHHHHHTHHH----------HHHHHHHTTTCCCTTTTSSGGGHHHHHHHHHTTTSCHHHHHHH
T ss_pred -cHHHHHHH----HHHHHHHHHhCHHH----------HHHHHHHHHcCCCCccccCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 11123321 02223333322211 223344555554321 121233445556667788899988888
Q ss_pred HHHHHHHHhhhc
Q 007773 571 VASIMDRHLDDL 582 (590)
Q Consensus 571 ~~~~~~~~~~~~ 582 (590)
|.++++.-++.+
T Consensus 668 ~~~lI~~S~~s~ 679 (696)
T 2x6h_A 668 LQSLLDVSITAV 679 (696)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 888888777654
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=90.75 E-value=0.79 Score=40.95 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=58.8
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCccc--ccCCccccccCcccccceeEE
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGREL--ARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L--~~D~~tL~dygI~~gstL~Lv 103 (590)
....+|.| ..+|..+.-+...++||.+|..-|... +.+.....|+ |-.+.| .+.+.+|.+.|+....+|.+.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 56688888 558889999999999999999999887 7766667777 558888 445799999999988887664
No 227
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=89.67 E-value=0.92 Score=40.30 Aligned_cols=76 Identities=21% Similarity=0.409 Sum_probs=52.2
Q ss_pred CCCEEEEE-Ee---CCeEEEEEecCCCCHHHHHHHHHHh--hCCCcc------ceEEEE-cCc----cccc--------C
Q 007773 31 NDSILIFL-SV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF-EGR----ELAR--------S 85 (590)
Q Consensus 31 ~~sM~I~V-tl---~G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~~------~QrLvf-~Gk----~L~~--------D 85 (590)
..+|.++| .. ....+.+.|...|||.++|+||-.. .|+|.. ...|-+ .|. .|.+ +
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 35677777 32 2346899999999999999999876 466654 345665 232 2332 1
Q ss_pred C----ccccccCcccccceeEEeee
Q 007773 86 N----SRVRDYGLADGNVLHLVLRL 106 (590)
Q Consensus 86 ~----~tL~dygI~~gstL~LvlrL 106 (590)
. .||+.|+|.+|+++-|+.+.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred cceEeccccccCCCCCCEEEEEeCC
Confidence 1 47889999999999887654
No 228
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=89.07 E-value=1.5 Score=49.27 Aligned_cols=141 Identities=22% Similarity=0.298 Sum_probs=80.3
Q ss_pred hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChH
Q 007773 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAE 491 (590)
Q Consensus 414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~ 491 (590)
.+.-.+|.=|++.=.|||.+|||+.. +|+ ++-||=|+||-.. +. | -..|| +++.++.+-....+
T Consensus 463 S~A~ySvv~YILGigDRH~~NILld~--tG~--v~HIDFG~~f~~~---p~------p-e~vPFRLT~~mv~~mG~~~~e 528 (614)
T 3ls8_A 463 SCAGYCVITYILGVGDRHLDNLLLTK--TGK--LFHIDFGYILGRD---PK------P-LPPPMKLNKEMVEGMGGTQSE 528 (614)
T ss_dssp HHHHHHHHHHHHTCCCCCTTSEEECT--TSC--EEECCCSSCTTCC---SS------S-SCCSSCCCHHHHHHTTCTTSH
T ss_pred HHHHHhHhheeeeccCCCCcceeEcC--CCC--EeeeehHHhhccC---CC------C-CCCCeecCHHHHHHhCCCCCc
Confidence 34557788899999999999999975 487 9999999999643 11 1 14555 45544433322211
Q ss_pred HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCC-CchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773 492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKD-ESVIEQIVREAQDAVLPGTSEDGFLES 570 (590)
Q Consensus 492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~-~s~le~~~~~a~~~~~~~~~~~~f~~~ 570 (590)
....++.. -+..+.+||-..-+ .-.+.+||.-..+.. .+.-+..+..-++...++.+|+.-.+.
T Consensus 529 -~f~~Fr~~----c~~~~~~LR~~~~~----------il~l~~lM~~s~lp~~~~~~~~~i~~l~~rf~l~lse~ea~~~ 593 (614)
T 3ls8_A 529 -QYQEFRKQ----CYTAFLHLRRYSNL----------ILNLFSLMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEAVHY 593 (614)
T ss_dssp -HHHHHHHH----HHHHHHHHHHTHHH----------HHHHHHTTTTSCCHHHHTSGGGHHHHHHHHTTTTSCHHHHHHH
T ss_pred -hHHHHHHH----HHHHHHHHHHCHHH----------HHHHHHHHhcCCCCccccChHHHHHHHHHHcCCCCCHHHHHHH
Confidence 11223321 12233333332222 222333444322110 011123455666777888999988888
Q ss_pred HHHHHHHHhhhcC
Q 007773 571 VASIMDRHLDDLT 583 (590)
Q Consensus 571 ~~~~~~~~~~~~~ 583 (590)
+..+++.-++-+.
T Consensus 594 ~~~lI~~S~~s~~ 606 (614)
T 3ls8_A 594 MQSLIDESVHALF 606 (614)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhH
Confidence 8888888777654
No 229
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=88.96 E-value=1.1 Score=40.32 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=51.1
Q ss_pred CEEEEE-E--eCCeEEEEEecCCCCHHHHHHHHHHh--hCCCc------cceEEEE-cC---cc-ccc--------CC--
Q 007773 33 SILIFL-S--VGGSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-EG---RE-LAR--------SN-- 86 (590)
Q Consensus 33 sM~I~V-t--l~G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~------~~QrLvf-~G---k~-L~~--------D~-- 86 (590)
++.++| . .++..+++.|...|||.++|+||-.. .|+|. +...|-+ .| +. |.+ +.
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 344555 2 13456889999999999999999876 45554 4456665 23 22 431 11
Q ss_pred --ccccccCcccccceeEEeeec
Q 007773 87 --SRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 87 --~tL~dygI~~gstL~LvlrLs 107 (590)
.||+.|+|.+|+++-|+.+..
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~~ 106 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLIDK 106 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC-
T ss_pred EeccccccCCCCCCEEEEEEccc
Confidence 478899999999998886643
No 230
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.68 E-value=1.1 Score=37.55 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=56.6
Q ss_pred CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE---cCcccccCCccccccCccc
Q 007773 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLAD 96 (590)
Q Consensus 30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf---~Gk~L~~D~~tL~dygI~~ 96 (590)
+..+.++.| ....+...++|+|..++..+--.|-++..+.+..-.|.- .+.+|. -+.+|.||||++
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld-LskSLndlgirE 76 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD-LTKSLNDLGLRE 76 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC-TTSCHHHHTCSE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc-hhcchhhhhhhh
Confidence 478999999 555578899999999999999999999999998877763 356675 789999999987
No 231
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=88.66 E-value=1.3 Score=38.47 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=57.7
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc-cCCccccccCcccccceeEEe
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA-RSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~-~D~~tL~dygI~~gstL~Lvl 104 (590)
....+|.| ..+|+.+.-+...++||.+|..-|... +.......|+ |-.+.|. +.+.+|++.|+....+|.+..
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 46788888 568888888999999999999999965 4445556666 5577886 357999999999888886643
No 232
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=88.49 E-value=1.1 Score=38.88 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=54.8
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC---CCCcccccCCCCCCEEEEEe
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~Le---D~~tL~dy~I~~gsvI~L~v 182 (590)
.+|.||..+|+.+.-....++||.+|.+-|....+.. .....|+ |-.+.+. ...+|.+.++.+.++|++..
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT--YGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 4566666677777777789999999999998886644 4556666 5677775 37899999999998888754
No 233
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=88.17 E-value=1.6 Score=42.44 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=52.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCcc-ceEEEE-c----CcccccCCccccccCcccccceeEEeeeccc
Q 007773 44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLvf-~----Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
..++.++..+||.+|+.++....+++.+ +-||-. . ...|.+.+.+|.+++|.++..|.+-++..|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4677889999999999999999999986 567652 2 2246644689999999999999888876664
No 234
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=87.95 E-value=1.3 Score=43.53 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=54.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCcc-ceEEEE-c----CcccccCCccccccCcccccceeEEeeeccc
Q 007773 44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLvf-~----Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.+++.++..+||.+|+.++....+++.+ +-||-. . -..|.+.+.+|.++++.++..|.+-++..|+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4567789999999999999999999987 578774 3 2246645699999999999999888887665
No 235
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=87.79 E-value=2 Score=50.67 Aligned_cols=143 Identities=22% Similarity=0.304 Sum_probs=79.1
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHcc--Ch
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINAL--DA 490 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~L--d~ 490 (590)
+--.+|.=|++.=.|||.+|||+.. +|+ ++-||=|.||-..-. .| ..---..|| +++.++.+..- ..
T Consensus 775 ~A~~Svv~YILGlgDRH~~NILid~--tG~--v~HIDFG~~f~~~~~--~l---~~~pE~VPFRLT~~mv~~mg~g~~~~ 845 (940)
T 2wxf_A 775 CAGYCVATYVLGIGDRHSDNIMIRE--SGQ--LFHIDFGHFLGNFKT--KF---GINRERVPFILTYDFVHVIQQGKTNN 845 (940)
T ss_dssp HHHHHHHHHHHTCCCCCGGGEEEET--TSC--EEECCCCCCTTCC--------------CCCCCCCHHHHHHHTTTCSCC
T ss_pred HHHHHHHHHHhccCCCCcccEEEec--CCC--EEEEeehhhhccccc--cc---CCCCCCCCccCCHHHHHHHcCCCCCC
Confidence 4456778888888999999999986 487 999999999954211 11 000123454 56655555421 11
Q ss_pred HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773 491 EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLES 570 (590)
Q Consensus 491 ~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~ 570 (590)
+.....++. -|..++++.. +- .-.+-.+-++|-+..+-.-+.- .-++.-++.+.++.+|+.-.+.
T Consensus 846 s~~~g~Fr~-------~c~~~~~~LR----~~---~~~ll~ll~lml~~~lp~~~~~-~~i~~l~~r~~l~~se~ea~~~ 910 (940)
T 2wxf_A 846 SEKFERFRG-------YCERAYTILR----RH---GLLFLHLFALMRAAGLPELSCS-KDIQYLKDSLALGKTEEEALKH 910 (940)
T ss_dssp HHHHHHHHH-------HHHHHHHHHH----HT---HHHHHHHHHHHGGGCCTTSCSH-HHHHHHHHHHTTTSCHHHHHHH
T ss_pred CcchhhHHH-------HHHHHHHHHH----hH---HHHHHHHHHHHhCCCCcccCch-HHHHHHHHHhCCCCCHHHHHHH
Confidence 222233332 2333333211 11 1123334455556543322211 2244445667788899888888
Q ss_pred HHHHHHHHhhh
Q 007773 571 VASIMDRHLDD 581 (590)
Q Consensus 571 ~~~~~~~~~~~ 581 (590)
+.++++.-+.+
T Consensus 911 ~~~~i~~s~~~ 921 (940)
T 2wxf_A 911 FRVKFNEALRE 921 (940)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888887743
No 236
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=87.58 E-value=2 Score=37.74 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=45.9
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCEEcCC-------------CCcccccCCCCC
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEELED-------------QRLITDICKRNE 175 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif----~Gk~LeD-------------~~tL~dy~I~~g 175 (590)
+..+.+.|-.++||..+|+||-... |.|. .+++..|-+ .|+.|.| =+||..|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888999999999999997764 3332 246777776 3455654 257889999999
Q ss_pred CEEEEEe
Q 007773 176 AVIHLLV 182 (590)
Q Consensus 176 svI~L~v 182 (590)
+++-|+-
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998864
No 237
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=87.14 E-value=1.3 Score=39.43 Aligned_cols=70 Identities=9% Similarity=0.011 Sum_probs=55.6
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc--C-CCCcccccCCCCCCEEEEE
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL--E-DQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~L--e-D~~tL~dy~I~~gsvI~L~ 181 (590)
..+|.||..+|..+.-....++||.+|..-|... +.. .....|+ |-.+.| + ...+|.+.++.+.++|.+.
T Consensus 43 ~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 3567777778887887888999999999999876 544 5677777 567888 3 3799999999888888764
No 238
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=86.37 E-value=2.1 Score=39.00 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=47.8
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif----~Gk-~LeD~-------------~tL~dy~I~~g 175 (590)
..+++.|=.++||.++|+||-... |.|- .+++.-|-+ .|+ .|.|. +||..|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568899999999999999998775 3321 245556665 343 36553 48999999999
Q ss_pred CEEEEEeecC
Q 007773 176 AVIHLLVRKS 185 (590)
Q Consensus 176 svI~L~vrks 185 (590)
+++.|+-+.+
T Consensus 121 a~l~l~~~~~ 130 (138)
T 2r2o_A 121 ATVALVPCLT 130 (138)
T ss_dssp CEEEEEEC--
T ss_pred CEEEEEECCC
Confidence 9999977655
No 239
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=85.31 E-value=2 Score=44.67 Aligned_cols=64 Identities=17% Similarity=0.040 Sum_probs=53.6
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhcCC--CCCCCcEEEEE------CCEEcCCCCcccccCCCCCCEEEEEe
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELIC------DGEELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi--~~~~~~Q~Lif------~Gk~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
+-+-++..+++.||.++-.+|.++... ..+.++.-|.. +|..|++.++|+.|++++++.|+..-
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 455678888999999999999988752 23478889988 66889999999999999999998753
No 240
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=84.59 E-value=8.1 Score=42.52 Aligned_cols=115 Identities=11% Similarity=0.024 Sum_probs=74.5
Q ss_pred CCCEEEEEEeCC---eEEEEEecCCCCHHHHHHHHHHhhCCC---ccceEEE--EcCcc---cccCCccccccCcccccc
Q 007773 31 NDSILIFLSVGG---SVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLV--FEGRE---LARSNSRVRDYGLADGNV 99 (590)
Q Consensus 31 ~~sM~I~Vtl~G---~t~~l~V~~sdTV~~LK~kIq~~~Gip---~~~QrLv--f~Gk~---L~~D~~tL~dygI~~gst 99 (590)
...|+|+....+ ..+.+.|..+.||.+|-..++++.+++ ..+.+|+ ++++. +. ++.+|....=+...+
T Consensus 337 ~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~~i~d~~~~~ 415 (530)
T 2ylm_A 337 RRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLECLSPATSRT 415 (530)
T ss_dssp BCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGGGSCCCTTCE
T ss_pred CceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccccccccccce
Confidence 345666653222 367777888999999999999999987 4556664 67764 54 555665442211223
Q ss_pred eeEEeeecc--------cccceee-------eccceeeEEEeecCCcHHHHHHHHHHhcCCC
Q 007773 100 LHLVLRLSD--------LQAITVT-------TVCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (590)
Q Consensus 100 L~LvlrLsd--------~m~I~Vk-------t~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~ 146 (590)
+.+-.-..+ .+.|.|- ..-|..|.+.|.+..|..++|++|+++.|++
T Consensus 416 ~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~ 477 (530)
T 2ylm_A 416 FRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQ 477 (530)
T ss_dssp EEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCC
T ss_pred EEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCC
Confidence 332111111 1223331 1358889999999999999999999999976
No 241
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=84.54 E-value=1.1 Score=40.05 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=54.4
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhh-CCCccceEEE--EcCcccccCCccccccCcccccce
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYN-GFFVKKQKLV--FEGRELARSNSRVRDYGLADGNVL 100 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~-Gip~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstL 100 (590)
....+|.| ..+|+.+.-+...++||.+|..-|.... +.......|+ |-.+.|.+++.+|.+.|+.+..+|
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 34578888 5688999999999999999999999863 3444555666 457888766799999999875443
No 242
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=84.32 E-value=3.1 Score=49.58 Aligned_cols=143 Identities=19% Similarity=0.261 Sum_probs=78.3
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHc--cCh
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINA--LDA 490 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~--Ld~ 490 (590)
+.-.+|.=|++.=.|||.+|||+.++ |+ ++.||=|+||-..-+ .| ..---..|| +++.++.+.. ...
T Consensus 924 ~A~ysvv~YiLgigDRH~~NILid~t--G~--v~HIDFG~~f~~~~~--~~---~~~~E~vPFrLT~~mv~vmg~G~~~~ 994 (1091)
T 3hhm_A 924 CAGYCVATFILGIGDRHNSNIMVKDD--GQ--LFHIDFGHFLDHKKK--KF---GYKRERVPFVLTQDFLIVISKGAQEC 994 (1091)
T ss_dssp HHHHHHHHHHHTCCCCCTTTEEEETT--SC--EEECCCCCCSCC-----------------CCCCCHHHHHHSSCSSSCC
T ss_pred hhhhhheEEEEeecCCCCcceEEeCC--CC--EEEEeehhhhccCCc--cC---CCCcCCCCceeHHHHHHHHhcCCCCc
Confidence 44567888999999999999999864 87 999999999964211 11 000123454 5555544321 111
Q ss_pred --HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHH
Q 007773 491 --EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFL 568 (590)
Q Consensus 491 --~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~ 568 (590)
......+|. -|..++++ |++ ..-.+-.+.++|--..+..-+. +.-++.-++...++.+|+.-.
T Consensus 995 e~s~~fg~Fr~-------~c~~a~~~----LR~---~~~~il~LlelM~~s~lp~~~~-~~~i~~lr~rf~l~lseeeA~ 1059 (1091)
T 3hhm_A 995 TKTREFERFQE-------MCYKAYLA----IRQ---HANLFINLFSMMLGSGMPELQS-FDDIAYIRKTLALDKTEQEAL 1059 (1091)
T ss_dssp SSSHHHHHHHH-------HHHHHHHH----HHH---TTTHHHHHHHHGGGSCCTTCSS-HHHHHHHHHHSCCSSCHHHHH
T ss_pred ccchhHHHHHH-------HHHHHHHH----HHh---hhHHHHHHHHHHhcCCCCccCc-hHHHHHHHHHhCCCCCHHHHH
Confidence 222233332 23333322 111 1222333444554433322111 233555677788999999888
Q ss_pred HHHHHHHHHHhhh
Q 007773 569 ESVASIMDRHLDD 581 (590)
Q Consensus 569 ~~~~~~~~~~~~~ 581 (590)
+.+..+|+.-+..
T Consensus 1060 ~~f~~~i~~s~~~ 1072 (1091)
T 3hhm_A 1060 EYFMKQMNDARHG 1072 (1091)
T ss_dssp HHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhc
Confidence 8888888777643
No 243
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=83.28 E-value=6.4 Score=47.02 Aligned_cols=141 Identities=23% Similarity=0.271 Sum_probs=77.7
Q ss_pred hheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHcc--ChH
Q 007773 416 HKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINAL--DAE 491 (590)
Q Consensus 416 ~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~L--d~~ 491 (590)
.-.+|.=|++.=.|||.+|||+.. +|+ ++-||=|.||-..-. .|. .---..|| +++.++.+..- ..+
T Consensus 928 A~ySvv~YILGlGDRH~~NILid~--tG~--v~HIDFG~~f~~~~~--~l~---~~pE~VPFRLT~~mv~~mg~g~~~~s 998 (1092)
T 2y3a_A 928 AGYCVASYVLGIGDRHSDNIMVKK--TGQ--LFHIDFGHILGNFKS--KFG---IKRERVPFILTYDFIHVIQQGKTGNT 998 (1092)
T ss_dssp HHHHHHHHHTTCCCCCTTTEEECT--TSC--EEECCCSCCSSCCCC--GGG---CCCCCCCCCCCHHHHHHHHTTCSSCS
T ss_pred HHHHHHHHHhcCCCCCCccEEEec--CCC--EEEEeehhhhhcCCc--cCC---CCCCCCCccCCHHHHHHHccCCCCCC
Confidence 346677788888999999999985 487 999999999954211 110 00124454 56666555421 111
Q ss_pred HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHH
Q 007773 492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESV 571 (590)
Q Consensus 492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~ 571 (590)
.....++ .-|..++++. ++-. -.+-.+-++|-+..+-.-+. +.-++.-++...++.+|+.-.+.+
T Consensus 999 ~~fg~Fr-------~~c~~a~~~L----R~~~---~~Il~ll~lml~~~Lp~~~~-~~~i~~lr~rf~l~~seeeA~~~~ 1063 (1092)
T 2y3a_A 999 EKFGRFR-------QCCEDAYLIL----RRHG---NLFITLFALMLTAGLPELTS-VKDIQYLKDSLALGKSEEEALKQF 1063 (1092)
T ss_dssp SSTTHHH-------HHHHHHHHHH----HHTH---HHHHHHHHHTSTTCCSSCSS-HHHHHHHHHHTTCSSCHHHHHHHH
T ss_pred cchhhHH-------HHHHHHHHHH----HhCH---HHHHHHHHHHhCCCCccccc-hhHHHHHHHhhCCCCCHHHHHHHH
Confidence 1111122 2243333321 1111 12334455666654432221 123444556677888998877777
Q ss_pred HHHHHHHhh
Q 007773 572 ASIMDRHLD 580 (590)
Q Consensus 572 ~~~~~~~~~ 580 (590)
.++++.-+.
T Consensus 1064 ~~~I~~s~~ 1072 (1092)
T 2y3a_A 1064 KQKFDEALR 1072 (1092)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777663
No 244
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=82.25 E-value=4.4 Score=33.84 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=53.6
Q ss_pred eEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 122 ~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
+.-.++-..++..||+.++.+.++. .+...++..+..|+++++|.|-|++-...+.+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~--L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCS--LDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSC--CSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCC--cccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 4445677889999999999999988 89999999999999999999999999999998765
No 245
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=81.29 E-value=5.9 Score=35.54 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=49.1
Q ss_pred cceeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCEE-cCC-------------CCcccccCCC
Q 007773 118 CGKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEE-LED-------------QRLITDICKR 173 (590)
Q Consensus 118 ~Gk~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif----~Gk~-LeD-------------~~tL~dy~I~ 173 (590)
.+..+.+.|=.++||..+|+||-... +.|. .+++..|-+ .|+. |.| =+||..|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568888889999999999997764 3331 246777876 3333 544 2578899999
Q ss_pred CCCEEEEEeecC
Q 007773 174 NEAVIHLLVRKS 185 (590)
Q Consensus 174 ~gsvI~L~vrks 185 (590)
+|+++-|+.+.+
T Consensus 95 dgatv~l~~~~~ 106 (127)
T 3h6n_A 95 EGASLAMSLIDK 106 (127)
T ss_dssp TTCEEEEEECC-
T ss_pred CCCEEEEEEccc
Confidence 999999976543
No 246
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=81.19 E-value=3.4 Score=35.81 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=52.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC--CCCcccccCCCCCCEEEEEe
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE--DQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~Le--D~~tL~dy~I~~gsvI~L~v 182 (590)
.+|.||..+|+.+.-....++||.+|..-|.... .. +....|+ |-.+.|. ...+|.+.++.+.++|.+.-
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~-~~--~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YH--KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CC--TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC-CC--CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4555666667666666678999999999998663 33 5667776 5577775 47999999999999987643
No 247
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=81.05 E-value=3 Score=37.21 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=51.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcC-CCCCCCcEEEE--ECCEEcCC-CCcccccCCCCCCEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH 179 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~g-i~~~~~~Q~Li--f~Gk~LeD-~~tL~dy~I~~gsvI~ 179 (590)
.+|.||..+|..+.-....++||.+|.+-|..... .. .....|+ |-.+.|+| ..+|.+.++.+.++|.
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--TSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--CCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 45666777777777777889999999999988642 22 4556776 56888865 7999999998855543
No 248
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=80.67 E-value=9.6 Score=30.07 Aligned_cols=67 Identities=7% Similarity=0.084 Sum_probs=48.2
Q ss_pred CCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 32 ~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
..|+|+|.-......+++....|+.+|...+ +++...-.+..+|..+.++. -+++|+.|.++....|
T Consensus 3 ~~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~------~L~~gD~V~ii~~V~G 69 (70)
T 1ryj_A 3 IGMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE------EIFDGDIIEVIRVIYG 69 (70)
T ss_dssp CCEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS------BCCTTCEEEEEECTTC
T ss_pred eeEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc------cCCCCCEEEEEecccc
Confidence 3488888544455677888889999998876 45666566778999887432 5778999888765554
No 249
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=80.38 E-value=4.8 Score=33.52 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=43.0
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (590)
...|.|.|... -++.|+|.++.+..+|..+|.++.+++++.-+|.|...
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 45688888655 59999999999999999999999999988889988754
No 250
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=79.48 E-value=6.3 Score=38.56 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=51.4
Q ss_pred eeEEEeecCCcHHHHHHHHHHhcCCCCCCC-cEEEEE-C----CEEcCC-CCcccccCCCCCCEEEEEeec
Q 007773 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELIC-D----GEELED-QRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 121 ~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~-~Q~Lif-~----Gk~LeD-~~tL~dy~I~~gsvI~L~vrk 184 (590)
.+++.+++.+||.+|++++++.++++ .+ +.||-. . -..|.| ..+|.++++.++..|.+-++.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 45677899999999999999999987 65 688874 2 356776 589999999999999987774
No 251
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=76.83 E-value=8 Score=45.64 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=71.5
Q ss_pred hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChH-
Q 007773 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAE- 491 (590)
Q Consensus 415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~- 491 (590)
+--.+|.=|++.=.|||.+|||+.. +|+ ++-||=|.||-..- +| +-.---..|| +++.++.+-....+
T Consensus 791 ~A~ySvv~YILGigDRH~~NILid~--tG~--v~HIDFG~~f~~~~---~~--l~~~pE~vPFRLT~~mv~~mG~~g~e~ 861 (961)
T 1e7u_A 791 CAGYCVATFVLGIGDRHNDNIMISE--TGN--LFHIDFGHILGNYK---SF--LGINKERVPFVLTPDFLFVMGTSGKKT 861 (961)
T ss_dssp HHHHHHHHHHTTCCCCCGGGEEEET--TCC--EEECCCCCC---------------CCCCCSSCCCHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHHccccCCCCcceEEec--CCC--EEEEeehhhhccCc---cc--cCCCCCCCCcccCHHHHHHhcccCCcc
Confidence 4456677888888999999999986 487 99999999996421 11 0000124454 56665555433222
Q ss_pred -HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773 492 -KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLES 570 (590)
Q Consensus 492 -~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~ 570 (590)
.....++.. -...+++||-..- .+-.+.+||-...+..=+. +.-+..-++...++.+|+.-.+.
T Consensus 862 s~~fg~F~~~----c~~~~~~LR~~~~----------~l~~ll~lm~~~~lp~~~~-~~~i~~lr~rf~l~~se~eA~~~ 926 (961)
T 1e7u_A 862 SLHFQKFQDV----CVKAYLALRHHTN----------LLIILFSMMLMTGMPQLTS-KEDIEYIRDALTVGKSEEDAKKY 926 (961)
T ss_dssp CHHHHHHHHH----HHHHHHHHHTTHH----------HHHHHHHHHHHHSCSSCCC-HHHHHHHHHHTTTTSCHHHHHHH
T ss_pred chhHHHHHHH----HHHHHHHHHHhHH----------HHHHHHHHHhcCCCCccCc-hHHHHHHHHHhCCCCCHHHHHHH
Confidence 122233321 0122222222111 1222233333332211111 12234445667788888876667
Q ss_pred HHHHHHHHhhh
Q 007773 571 VASIMDRHLDD 581 (590)
Q Consensus 571 ~~~~~~~~~~~ 581 (590)
+.++++.-++.
T Consensus 927 ~~~lI~~s~~~ 937 (961)
T 1e7u_A 927 FLDQIEVCRDK 937 (961)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 76766666653
No 252
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=76.72 E-value=4.2 Score=45.46 Aligned_cols=78 Identities=18% Similarity=0.363 Sum_probs=52.3
Q ss_pred CCCEEEEE-EeC------CeEEEEEecCCCCHHHHHHHHHHh--hCCCccc------eEEEE-c---Cc-ccccCC----
Q 007773 31 NDSILIFL-SVG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVKK------QKLVF-E---GR-ELARSN---- 86 (590)
Q Consensus 31 ~~sM~I~V-tl~------G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~~~------QrLvf-~---Gk-~L~~D~---- 86 (590)
-.++.++| ... ...+++.|...|||.++|+||-.. .|+|..+ ..|-+ . |+ .|.+.+
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 45677777 322 246899999999999999999865 4666543 34554 1 22 243211
Q ss_pred --------ccccccCcccccceeEEeeecc
Q 007773 87 --------SRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 87 --------~tL~dygI~~gstL~LvlrLsd 108 (590)
.||+.|+|.+|+++-|+.+...
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~~ 364 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLTK 364 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred ecCcceeecchhhcCCCCCcEEEEEecccc
Confidence 4899999999999988776543
No 253
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.31 E-value=7.5 Score=32.60 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=47.9
Q ss_pred ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE---CCEEcCCCCcccccCCCC
Q 007773 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRN 174 (590)
Q Consensus 117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif---~Gk~LeD~~tL~dy~I~~ 174 (590)
...++..+.|.+.-+..++--.|+++.... ++...|.- .+++|+-..+|.||++++
T Consensus 18 ~~tQKtVvRVSP~vpL~ellp~IC~Kcefd--p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 18 KKTQKTIVRVSPHASLQELAPIICSKCEFD--PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp TTTEEEEEEECSSSCTTTHHHHHHHHTTCC--TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred cCcceeEEEeCCCCcHHHHHHHHhhcccCC--hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 345678889999999999999999999876 88877774 567899999999999985
No 254
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=76.30 E-value=4.4 Score=32.75 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=47.1
Q ss_pred EEEEEEeCC-eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 34 ILIFLSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 34 M~I~Vtl~G-~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+|.|++.| ....+++.+..||++|-. +.|++++.-....+|+.+.+|. +.+|+.+.++--..|+
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-------CCCCCEEEEEEeeccc
Confidence 788886666 456688999999998765 4788888776778999987443 2358888776555544
No 255
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=76.20 E-value=7.2 Score=34.53 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=47.8
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE-CC---E-EcCC-------------CCcccccCCCC
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC-DG---E-ELED-------------QRLITDICKRN 174 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif-~G---k-~LeD-------------~~tL~dy~I~~ 174 (590)
...+.+.|-.++||..+|+||-... |.|. .+++..|-+ .| + .|.| =+||..|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457888889999999999997764 3332 246667776 22 3 2433 25788999999
Q ss_pred CCEEEEEeecC
Q 007773 175 EAVIHLLVRKS 185 (590)
Q Consensus 175 gsvI~L~vrks 185 (590)
|+++-|+.+.+
T Consensus 106 gatl~l~~~~~ 116 (117)
T 4e74_A 106 GSVVALVSKQV 116 (117)
T ss_dssp TCEEEEEECCC
T ss_pred CCEEEEEeCCc
Confidence 99999977653
No 256
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=76.02 E-value=5.4 Score=44.48 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=52.0
Q ss_pred CCCEEEEEE-eC---CeEEEEEecCCCCHHHHHHHHHHh--hCCCc------cceEEEE-c---Cc-ccccC--------
Q 007773 31 NDSILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-E---GR-ELARS-------- 85 (590)
Q Consensus 31 ~~sM~I~Vt-l~---G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~------~~QrLvf-~---Gk-~L~~D-------- 85 (590)
-.+|.++|. .+ ...+++.|...|||.++|+||-.. .|+|. +...|-+ . |+ .|.+.
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 456777773 22 367999999999999999999876 45654 3344554 2 22 23311
Q ss_pred ----CccccccCcccccceeEEeeec
Q 007773 86 ----NSRVRDYGLADGNVLHLVLRLS 107 (590)
Q Consensus 86 ----~~tL~dygI~~gstL~LvlrLs 107 (590)
=.||+.|+|.+|+++-|+.+..
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ceeEecchhhcCCCCCceEEEEeccc
Confidence 1478999999999999877643
No 257
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=75.48 E-value=5.5 Score=33.27 Aligned_cols=61 Identities=10% Similarity=0.223 Sum_probs=52.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr 105 (590)
.+.-.++-..++.+||..++.+.|++-+.-.+.+.+..|. ++.+|.+.+++-...+.+.+.
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~-~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLD-PDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECC-TTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccC-CCccHHHhhcccccEEEEEEE
Confidence 3455677788999999999999999999999999999986 999999999988888776543
No 258
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=74.23 E-value=8.1 Score=37.41 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred eeEEEeecCCcHHHHHHHHHHhcCCCCCCC-cEEEEE---C--CEEcCC-CCcccccCCCCCCEEEEEeec
Q 007773 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELIC---D--GEELED-QRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 121 ~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~-~Q~Lif---~--Gk~LeD-~~tL~dy~I~~gsvI~L~vrk 184 (590)
.+++.+++.+||.++++++++.++++ .+ +.||-. . ...|+| ..+|.++++.++..|.+-+|.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 46678899999999999999999987 65 678763 2 245666 579999999999999987773
No 259
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=72.61 E-value=6.5 Score=35.20 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=48.5
Q ss_pred CCCEEEEEEe----C------CeEEEEEecCCCCHHHHHHHHHHh----hCCCcc----ceEEEE-cCc---cccc----
Q 007773 31 NDSILIFLSV----G------GSVIPMRVMESDSIASVKLRIQSY----NGFFVK----KQKLVF-EGR---ELAR---- 84 (590)
Q Consensus 31 ~~sM~I~Vtl----~------G~t~~l~V~~sdTV~~LK~kIq~~----~Gip~~----~QrLvf-~Gk---~L~~---- 84 (590)
-.++.+.|.. . ...+++.|...|||.++|+||-.. .|+|.. ...|-+ .|. .|.+
T Consensus 17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 4556777733 2 247899999999999999998765 377654 233443 121 2211
Q ss_pred -----C----CccccccCcccccceeEEe
Q 007773 85 -----S----NSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 85 -----D----~~tL~dygI~~gstL~Lvl 104 (590)
+ =.||+.|+|.+|+++-|+-
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEee
Confidence 1 1467889999999987653
No 260
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=71.71 E-value=24 Score=38.74 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=91.2
Q ss_pred CCCEEEEEE-e--CCeEE----EEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC------cccccCCcccccc--Ccc
Q 007773 31 NDSILIFLS-V--GGSVI----PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG------RELARSNSRVRDY--GLA 95 (590)
Q Consensus 31 ~~sM~I~Vt-l--~G~t~----~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G------k~L~~D~~tL~dy--gI~ 95 (590)
.+.+.||++ . ..+++ .+-|..+++|.++-..|.+..|+|++....+|.- ..|.+.+.++.+. .++
T Consensus 128 ~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~ 207 (530)
T 2ylm_A 128 DHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELM 207 (530)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCC
T ss_pred CCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhccc
Confidence 567999993 2 22232 2468899999999999999999999888777762 2354357799999 999
Q ss_pred cccceeEEeeecc------------------cccceeee---ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEE
Q 007773 96 DGNVLHLVLRLSD------------------LQAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154 (590)
Q Consensus 96 ~gstL~LvlrLsd------------------~m~I~Vkt---~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~L 154 (590)
+|+.|-.-....+ .+.|.++- .+...|.+.+....|-.+|-++|++..++. |...++
T Consensus 208 ~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~d--P~~lRf 285 (530)
T 2ylm_A 208 DGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTD--PMLLQF 285 (530)
T ss_dssp TTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSC--GGGEEE
T ss_pred CCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCC--chhEEE
Confidence 9999855444331 13333332 235679999999999999999999999986 788776
Q ss_pred E
Q 007773 155 I 155 (590)
Q Consensus 155 i 155 (590)
+
T Consensus 286 ~ 286 (530)
T 2ylm_A 286 F 286 (530)
T ss_dssp E
T ss_pred E
Confidence 5
No 261
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.30 E-value=19 Score=30.30 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=42.7
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccc-eEEEEcCc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFEGR 80 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf~Gk 80 (590)
...|+|.+.++|..+.+.++++.+..+|..+++...++...+ ..+.|-..
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 467999999999999999999999999999999999987555 46667654
No 262
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=70.67 E-value=17 Score=30.45 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=47.5
Q ss_pred CCCEEEEEE-e-------CCeEEEEEecCCCCHHHHHHHHHHhhC-C----------CccceEEEEcCcccccCCccccc
Q 007773 31 NDSILIFLS-V-------GGSVIPMRVMESDSIASVKLRIQSYNG-F----------FVKKQKLVFEGRELARSNSRVRD 91 (590)
Q Consensus 31 ~~sM~I~Vt-l-------~G~t~~l~V~~sdTV~~LK~kIq~~~G-i----------p~~~QrLvf~Gk~L~~D~~tL~d 91 (590)
..+|+|.|. + ......+++....||.+|...+..... + ....-.+..+|+... . +
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-~-----~ 80 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W-----D 80 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----T
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-C-----C
Confidence 578999993 1 234678888788999999999987631 1 112334667787764 2 5
Q ss_pred cCcccccceeEEeeecc
Q 007773 92 YGLADGNVLHLVLRLSD 108 (590)
Q Consensus 92 ygI~~gstL~LvlrLsd 108 (590)
+-+++|+.|.++..+.|
T Consensus 81 ~~L~dGDeV~i~ppv~G 97 (98)
T 1vjk_A 81 EELKDGDVVGVFPPVSG 97 (98)
T ss_dssp CBCCTTCEEEEESCC--
T ss_pred CCCCCCCEEEEECCCCC
Confidence 67889999888766554
No 263
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=62.50 E-value=10 Score=31.49 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=37.2
Q ss_pred eeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCE
Q 007773 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (590)
Q Consensus 113 ~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk 159 (590)
.||....-++.|.|.+..+..+|.++|+++.+++ ++...|.|+.+
T Consensus 7 ~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 7 TLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELR--LEHTKLSYRPR 51 (83)
T ss_dssp EEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCC--GGGCCEEECCT
T ss_pred EEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCC--cceeEEEeeCC
Confidence 3333333688899999999999999999999987 88889999764
No 264
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=61.55 E-value=21 Score=27.49 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=44.3
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 38 Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
|+.+|+.+.+ ...||.+|...+ +++...-.+..+|+.+.+ ..-.+.-+++|+.|.++....|
T Consensus 2 i~vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~~V~G 63 (64)
T 2cu3_A 2 VWLNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVALMQG 63 (64)
T ss_dssp EEETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEECCCC
T ss_pred EEECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEeeccc
Confidence 3567777654 568999998876 455666667788988862 3444567889999988766554
No 265
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=61.53 E-value=32 Score=30.74 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=41.9
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhc----CCCC--CCCcEEEEEC----CEEc----------CC----CCcccccCCCCC
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKG----REFV--DLKNQELICD----GEEL----------ED----QRLITDICKRNE 175 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~----gi~~--~~~~Q~Lif~----Gk~L----------eD----~~tL~dy~I~~g 175 (590)
..+++.|-.++||.++|+||-... +.|- .+++..|-++ +..| ++ -+||..|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 468888999999999999996552 5442 1345555541 1222 22 246788999999
Q ss_pred CEEEEE
Q 007773 176 AVIHLL 181 (590)
Q Consensus 176 svI~L~ 181 (590)
+++-|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999875
No 266
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=61.36 E-value=30 Score=34.74 Aligned_cols=74 Identities=11% Similarity=-0.014 Sum_probs=55.2
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE--CCE--EcCCCCcccccCCCCCCEEEEEeec
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGE--ELEDQRLITDICKRNEAVIHLLVRK 184 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif--~Gk--~LeD~~tL~dy~I~~gsvI~L~vrk 184 (590)
.+.+.|...+| ++.+.|+.+.|+.+|=+.|+...|+. ..+.--|.| +|. .|+..+.|.+..++.+....+..|+
T Consensus 22 ~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 22 TFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLR-ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC-CGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred eeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCC-CCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 35677778888 78899999999999999999999987 255566776 443 3777888888765555555555543
No 267
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=60.68 E-value=16 Score=30.47 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=44.9
Q ss_pred CCCEEEEEEeCCeEEEEEecCC-CCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 31 NDSILIFLSVGGSVIPMRVMES-DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~s-dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
...|+| +++|+.+. +... .||.+|...+ +++...-.+..+|..+. .....++-+++|+.|.++....|
T Consensus 18 ~~~M~I--~vNGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~--~~~~~~~~L~dGD~Vei~~~V~G 86 (87)
T 1tyg_B 18 GGRHML--QLNGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIG--KERYHEVELCDRDVIEIVHFVGG 86 (87)
T ss_dssp ----CE--EETTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEEC--GGGTTTSBCCSSSEEEEEEECCC
T ss_pred CcceEE--EECCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECC--hhhcCCcCCCCCCEEEEEccccc
Confidence 455654 55776554 4565 7999998876 56656556778999886 33455677899999988766554
No 268
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=58.59 E-value=32 Score=28.72 Aligned_cols=38 Identities=5% Similarity=0.027 Sum_probs=35.1
Q ss_pred CCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCC
Q 007773 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFF 69 (590)
Q Consensus 32 ~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip 69 (590)
..|+|.|..++..+-|+|.++-+..+|+.||..+..+.
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 67999998888999999999999999999999998884
No 269
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=58.59 E-value=27 Score=34.62 Aligned_cols=72 Identities=19% Similarity=0.117 Sum_probs=51.1
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE---CCE--EcCCCCcccccCCCCCCEEEEEee
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGE--ELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif---~Gk--~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
+.+.|...+| ++.+.|+.+.|+.++=+.|+...|+. ..+.--|.| +|. .|+..+.+.+..+..+....|..|
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLR-EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCC-CcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4566777887 67899999999999999999999986 345566776 232 366677776655444445544444
No 270
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=56.63 E-value=61 Score=25.29 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=42.5
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
.|+|+|+-.. ....+++....||.+|.+.+ +.. +....+..+|+.+.... -+++|+.|.++
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~--~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIP--IETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCC--TTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCC--CCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 4777766432 22456677778999998766 444 56677889999987544 56788888875
No 271
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=56.28 E-value=1.8 Score=46.35 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=31.0
Q ss_pred hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEee
Q 007773 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI 450 (590)
Q Consensus 413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pI 450 (590)
.++-|..||.+++.|+|.|+.|+=+-.+.+|.++|.|.
T Consensus 293 ~~~~rr~vfn~ligN~D~H~KN~s~l~~~~g~~~LaPa 330 (440)
T 3tpd_A 293 YDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPF 330 (440)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGCEEEECGGGCEEECCC
T ss_pred HHHHHHHHhhHhhcCCcCCccceEEEEcCCCceEECch
Confidence 45667889999999999999997665544577889887
No 272
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=53.78 E-value=12 Score=33.60 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=31.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCccceEEEEc
Q 007773 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (590)
Q Consensus 45 ~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~ 78 (590)
.+++|..+.|+.++|..|++..|+|+++|+|-.-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678999999999999999999999999998754
No 273
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=53.69 E-value=23 Score=27.91 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=39.1
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCc--cceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 46 PMRVMESDSIASVKLRIQSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 46 ~l~V~~sdTV~~LK~kIq~~~Gip~--~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.+++ ...||.+|...+....++.. ..-.+..+|+.+. + .++-+++|+.|.+....+|+
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~-~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLID-N----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEEC-C----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcC-C----CCcCCCCCCEEEEECCCCCC
Confidence 3556 56899999999987544321 2334556777654 2 25568899999988776654
No 274
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=51.87 E-value=22 Score=27.49 Aligned_cols=63 Identities=6% Similarity=0.108 Sum_probs=43.7
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 38 Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
|+.+|+.+ ++....||.+|...+ +++...-.+..+|+.+. .....+.-+++|+.|.++....|
T Consensus 3 i~vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~--~~~~~~~~L~~gD~v~i~~~V~G 65 (66)
T 1f0z_A 3 ILFNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVP--REQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_dssp EEESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEEC--HHHHTTCCCCTTEEECEEESCCC
T ss_pred EEECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECC--chhcCCcCCCCCCEEEEEeeccc
Confidence 45577655 446678999998876 45556556778888875 23344567889999988766554
No 275
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=48.71 E-value=73 Score=26.39 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=38.8
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhcC-CC-------CC-CCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKGR-EF-------VD-LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~g-i~-------~~-~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
....+++....||.+|.+.+..... .. .. .....+..||+.... +.-+++|+.|.++
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVF 92 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEE
Confidence 3567788778899999999988742 00 00 133557778887753 5567888888774
No 276
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=47.24 E-value=83 Score=35.18 Aligned_cols=67 Identities=9% Similarity=0.073 Sum_probs=46.7
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCE-EcCC-------------CCcccccCCCC
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELED-------------QRLITDICKRN 174 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif----~Gk-~LeD-------------~~tL~dy~I~~ 174 (590)
...+.+.|-.+|||..+|+||-... |.|. .+++.-|-+ .|+ .|.| =+||.+|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 4568889999999999999997763 3321 256666765 233 2333 25889999999
Q ss_pred CCEEEEEeecC
Q 007773 175 EAVIHLLVRKS 185 (590)
Q Consensus 175 gsvI~L~vrks 185 (590)
|+++-|+-+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999976643
No 277
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=46.99 E-value=47 Score=26.84 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=43.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhhC-CC----------ccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 43 SVIPMRVMESDSIASVKLRIQSYNG-FF----------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 43 ~t~~l~V~~sdTV~~LK~kIq~~~G-ip----------~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
....+++....||.+|...+..... +. ...-.+..+|+... . ++-+++|+.|.+...++|+
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-L-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-T-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-C-----CcccCCCCEEEEECCCCCC
Confidence 6778888888899999999987752 10 01135666777765 3 4568899999888776653
No 278
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=45.39 E-value=31 Score=27.64 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=41.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
|+|+|+-.......+++....||.+|- +..+++ ++...+..||+.+..+.. .+|+.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~--~~~VvV~vNG~~v~~d~~------l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLS--PHEVTVLVDGRPVPEDQS------VEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCC--SSCCCEECCCCCCCTTSS------SCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCC--cceEEEEECCEECCHHHC------CCCCEEEEE
Confidence 566676553344557888999998864 456777 777777889998865542 236777764
No 279
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=44.92 E-value=52 Score=36.44 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=51.8
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC-----EEcCCCCcccccCCCCCCEEEEEee
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-----EELEDQRLITDICKRNEAVIHLLVR 183 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G-----k~LeD~~tL~dy~I~~gsvI~L~vr 183 (590)
+.+.|...+| ++.+.|+.+.|+.+|=..|+...|+. ..+..-|.|-. ..|+....|.+.++..+..+.|.+|
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~-e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLR-EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCC-CccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 5566777787 67899999999999999999999986 35666777732 3466666776655545555555444
No 280
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=43.97 E-value=50 Score=36.94 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=46.0
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif----~Gk-~LeD~-------------~tL~dy~I~~g 175 (590)
..+.+.|-.+|||..+|+||-... |.|. .+++..|-+ .|+ .|.|. +||.+|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457888999999999999997553 3321 246666665 233 34442 58999999999
Q ss_pred CEEEEEeec
Q 007773 176 AVIHLLVRK 184 (590)
Q Consensus 176 svI~L~vrk 184 (590)
+++-|+-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999986554
No 281
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=43.46 E-value=69 Score=27.78 Aligned_cols=77 Identities=9% Similarity=0.005 Sum_probs=47.3
Q ss_pred CCCEEEEEE-------eCC--eEEEEEecC---CCCHHHHHHHHHHhh-CCC----------ccceEEEEcCcccccCCc
Q 007773 31 NDSILIFLS-------VGG--SVIPMRVME---SDSIASVKLRIQSYN-GFF----------VKKQKLVFEGRELARSNS 87 (590)
Q Consensus 31 ~~sM~I~Vt-------l~G--~t~~l~V~~---sdTV~~LK~kIq~~~-Gip----------~~~QrLvf~Gk~L~~D~~ 87 (590)
..+|+|.|. +.| +.+.+++.. ..||.+|...|.+.+ +.. ...-.++.+|+... ..
T Consensus 9 ~~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~--~l 86 (114)
T 1wgk_A 9 AAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE--LL 86 (114)
T ss_dssp CCCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH--HH
T ss_pred CCCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee--cc
Confidence 366999993 233 366788774 359999999998775 110 11112333444321 00
Q ss_pred cccccCcccccceeEEeeeccc
Q 007773 88 RVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 88 tL~dygI~~gstL~LvlrLsd~ 109 (590)
-=.+|-+++|+.|.++..++++
T Consensus 87 ~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 87 GELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp CTTTCBCCSSEEEEEEECSCCC
T ss_pred CCcCcCCCCCCEEEEeCCCCCC
Confidence 1135789999999998888877
No 282
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=43.00 E-value=24 Score=28.15 Aligned_cols=63 Identities=8% Similarity=0.101 Sum_probs=46.1
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 38 Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+++|+...+ ...||.+|-.. .++++..--+..+|..+. .....++-+++|+.|.++-...++
T Consensus 3 I~vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVp--r~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 3 VTINGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVP--RGKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp EEETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEEC--HHHHTTCBCCTTCEEEEECCCCCC
T ss_pred EEECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEEccccCC
Confidence 4567776554 56889888764 567777777889999987 345667788999999887666554
No 283
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=42.46 E-value=57 Score=33.30 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=44.6
Q ss_pred EEEE-E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc-cccCCccccccC
Q 007773 35 LIFL-S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-LARSNSRVRDYG 93 (590)
Q Consensus 35 ~I~V-t-l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-L~~D~~tL~dyg 93 (590)
.+++ . ..-....+.+.+..|+.+++.++++.+++++..|.|++.+.. ..+.......|.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 312 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred EEEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 3444 3 345778889999999999999999999999999999998843 322444444443
No 284
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=41.07 E-value=30 Score=28.02 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=45.7
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCC-ccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 38 Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip-~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
|+++|+.+.+......||.+|-..+ |++ +..--+..+|..+. .....++-+++|+.|.++-...|+
T Consensus 3 I~vNGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVp--r~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 3 LTVNGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLE--REAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp EEETTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECC--TTHHHHCEECSSBCEEECCCCCCS
T ss_pred EEECCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEEeeecCC
Confidence 4567775544211567999987754 565 55556789999997 345667788999999887665544
No 285
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=40.86 E-value=42 Score=28.70 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=32.9
Q ss_pred CCEEEEEEeC--------CeEEEEEecCCCCHHHHHHHHHHhhCCC
Q 007773 32 DSILIFLSVG--------GSVIPMRVMESDSIASVKLRIQSYNGFF 69 (590)
Q Consensus 32 ~sM~I~Vtl~--------G~t~~l~V~~sdTV~~LK~kIq~~~Gip 69 (590)
++|+|.|..+ +.++.|.|.++.+..+|..+|..+.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 5588888555 6689999999999999999999998875
No 286
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=40.29 E-value=57 Score=27.94 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=35.5
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccc
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK 72 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~ 72 (590)
....-|.| ..+|+...|.|++++|+.++-+.+..+.+.....
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~ 49 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE 49 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCC
Confidence 45677778 7899999999999999999999999998765443
No 287
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=40.04 E-value=1.4e+02 Score=25.62 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=56.6
Q ss_pred ccceeeecc---ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC---EEcCCCCcccccCCCCCCEEEEEe
Q 007773 110 QAITVTTVC---GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EELEDQRLITDICKRNEAVIHLLV 182 (590)
Q Consensus 110 m~I~Vkt~~---Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G---k~LeD~~tL~dy~I~~gsvI~L~v 182 (590)
++|+|...+ ....++.|....-|+-|-.+|-++.++..+=.+.-|-.-. ..|.-..||..|+|+-++.+++.-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 456665544 3668899999999999999999888776555677777633 446888999999999999998753
No 288
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=39.40 E-value=55 Score=32.73 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=49.0
Q ss_pred cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC-----EEcCCCCcccccC
Q 007773 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-----EELEDQRLITDIC 171 (590)
Q Consensus 109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G-----k~LeD~~tL~dy~ 171 (590)
.+.+.|...+|....+.|+...|+.+|=+.|+...|+. ..+.--|.|-. ..|+..+.+.+..
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL-EEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS-SGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CcceeEEEEEcCCCccchhccchhHHHhc
Confidence 46778888999999999999999999999999999976 35656777632 3466666666654
No 289
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=39.20 E-value=67 Score=26.18 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=39.3
Q ss_pred EEEecCCCCHHHHHHHHHHhhCC------C-------ccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773 46 PMRVMESDSIASVKLRIQSYNGF------F-------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 46 ~l~V~~sdTV~~LK~kIq~~~Gi------p-------~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~ 109 (590)
.+++ ...||.+|...+..+..- . ...-.+..+|+... .. .=.++-+++|+.|.++..++|+
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~-~~-~~~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVR-FS-GGLATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGG-GT-TGGGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEcc-Cc-CCCCcCCCCCCEEEEECCCCCC
Confidence 4554 467999999999877521 0 01234556777664 21 1135678899999988877654
No 290
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=39.19 E-value=1.4e+02 Score=24.68 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=38.9
Q ss_pred eEEEEEec--CCCCHHHHHHHHHHhhCCCccc-------------eEEEEcCcccccCCccc--cccCcccccceeEEee
Q 007773 43 SVIPMRVM--ESDSIASVKLRIQSYNGFFVKK-------------QKLVFEGRELARSNSRV--RDYGLADGNVLHLVLR 105 (590)
Q Consensus 43 ~t~~l~V~--~sdTV~~LK~kIq~~~Gip~~~-------------QrLvf~Gk~L~~D~~tL--~dygI~~gstL~Lvlr 105 (590)
+...+++. ...||.+|...+.++..-.... -.+..+|+... .+ .++-+++|+.|.+...
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~----~~~~~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE----LEGEKDYILEDGDIISFTST 95 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG----GGTGGGCBCCTTCEEEEEEC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc----ccCCCCcCcCCCCEEEEECC
Confidence 56777776 6789999999998776311110 11223444221 11 3567889999988776
Q ss_pred eccc
Q 007773 106 LSDL 109 (590)
Q Consensus 106 Lsd~ 109 (590)
++|+
T Consensus 96 v~GG 99 (99)
T 2qjl_A 96 LHGG 99 (99)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 6653
No 291
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=38.92 E-value=51 Score=25.36 Aligned_cols=65 Identities=11% Similarity=0.010 Sum_probs=40.3
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks 185 (590)
|.|.|...+|+. +++....|+.++-+.+....+ ....-...+|+..+- ++-+++|+.|.++-..+
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~----~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG----DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH----HTEEEEEETTEECCT-----TCBCCSSSBEEEEECCC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc----cceEEEEECCEEeCC-----CcCcCCCCEEEEEECCC
Confidence 556776667775 456678899998877733221 112234568887664 34556778888765443
No 292
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=36.96 E-value=23 Score=31.69 Aligned_cols=33 Identities=12% Similarity=-0.005 Sum_probs=29.2
Q ss_pred eEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE
Q 007773 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC 156 (590)
Q Consensus 122 ~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif 156 (590)
..+.|..+.|+.++|..|++.+|++ +++|+|-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~--~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFP--QDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCC--cccEEEEE
Confidence 4578889999999999999999988 89999764
No 293
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=34.04 E-value=1.7e+02 Score=25.11 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCC--EEEEEE-eC---CeEEEEEecCCCCHHHHHHHHHHhhCCCcc--ceEEEEcCcc--cccCCccccccCcccccce
Q 007773 31 NDS--ILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSYNGFFVK--KQKLVFEGRE--LARSNSRVRDYGLADGNVL 100 (590)
Q Consensus 31 ~~s--M~I~Vt-l~---G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~--~QrLvf~Gk~--L~~D~~tL~dygI~~gstL 100 (590)
+++ ..|+|+ ++ ....+++|..+.-|+-|..||-++..++.+ .--|-.--+. |.+-..+|..|||+.++.+
T Consensus 15 d~SWeL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L 94 (102)
T 2kmc_A 15 SASWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANL 94 (102)
T ss_dssp CCCEEEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCE
T ss_pred cCcEEEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeee
Confidence 455 566663 33 367999999999999999999988765432 2234433322 3347899999999999998
Q ss_pred eEEe
Q 007773 101 HLVL 104 (590)
Q Consensus 101 ~Lvl 104 (590)
+...
T Consensus 95 ~ftp 98 (102)
T 2kmc_A 95 LFTP 98 (102)
T ss_dssp EEEE
T ss_pred eccC
Confidence 8754
No 294
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.37 E-value=1.4e+02 Score=25.61 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=42.6
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCccc
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L 82 (590)
...++|.+...|.+..|.+...-+..+|..|+...+|...+ |.|...+|
T Consensus 6 ~~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ld---L~y~n~El 54 (103)
T 2cu1_A 6 SGDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMD---LHYTNNEL 54 (103)
T ss_dssp SCEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCEE---EEECSSSS
T ss_pred cCcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCeee---EEEecceE
Confidence 57788888899999999999999999999999999998654 77875553
No 295
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=31.72 E-value=94 Score=25.96 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=37.4
Q ss_pred ceeee-ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEE
Q 007773 112 ITVTT-VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160 (590)
Q Consensus 112 I~Vkt-~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~ 160 (590)
|.||. ..|..+.+.++++.+-.+|.++++..++.. ..+...|.|...+
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~-~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFD-NEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCC-SSCCEEEEECCSS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCeEEEEEECCC
Confidence 45554 457888899999999999999999999975 2344678887664
No 296
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=30.25 E-value=1.4e+02 Score=23.26 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=34.9
Q ss_pred EEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 123 EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 123 ~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
.+++ ...||.+|.+.+....+...-.....+..||+...+ .+.-+++|+.|.++
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 3566 567999999999865332200144566678877442 34567888998875
No 297
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=29.25 E-value=1.8e+02 Score=28.86 Aligned_cols=72 Identities=7% Similarity=0.017 Sum_probs=51.6
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccc-eEEEE--cCcc--cccCCccccccCcccccceeEEe
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVF--EGRE--LARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf--~Gk~--L~~D~~tL~dygI~~gstL~Lvl 104 (590)
...+.+.| .++| ++.+.|+++.|+.+|=..|..+.|+.... --|.| .|.. |. .+.+|.+.++..+....+..
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~-~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLK-MDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECC-TTSBGGGSSCCCSSSEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCC-CccCHHHcCCCCCCCEEEEE
Confidence 57788999 6677 78899999999999999999999987532 23544 3332 54 67788887765555544444
No 298
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=28.69 E-value=2.9e+02 Score=26.96 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=48.4
Q ss_pred CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccc-eEEEEc---Ccc--cccCCccccccCcccccceeEEe
Q 007773 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFE---GRE--LARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf~---Gk~--L~~D~~tL~dygI~~gstL~Lvl 104 (590)
+|.+.| .++| +..+.|+++.|+.+|=..|.++.|+.... --|.+. |.. |. .+..+.+.++..+....+..
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK-LNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-SSSBGGGSCBCCCSSEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecc-cccCHHhhccCCCCCEEEEE
Confidence 467888 5565 78899999999999999999999987543 245542 322 43 56777777655554444443
No 299
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=28.23 E-value=1.4e+02 Score=23.93 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=39.7
Q ss_pred eeeEEEeecCCcHHHHHHHHHHhcCC-----CCC----CCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773 120 KVFEFHVERGRNVGYVKQQIAKKGRE-----FVD----LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (590)
Q Consensus 120 k~~~i~Vd~s~TV~~LK~kI~~~~gi-----~~~----~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~ 181 (590)
....+++....||.+|.+.+...... ... .....+..||+.... +.-+++|+.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 45678887788999999999887631 100 012567788888764 4557788888875
No 300
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=27.75 E-value=42 Score=37.95 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=41.5
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC-cccccCCcccccc
Q 007773 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-RELARSNSRVRDY 92 (590)
Q Consensus 40 l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G-k~L~~D~~tL~dy 92 (590)
...+...+.+.+..|+.+++..|++.+|+++..|.+++.+ ..+. .......|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~-p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALN-SAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCC-TTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCC-CCcchhhh
Confidence 3456778899999999999999999999999999999864 4453 55555544
No 301
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=27.38 E-value=2.2e+02 Score=24.58 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=43.1
Q ss_pred cccCCCCCCCCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccc
Q 007773 21 NFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELA 83 (590)
Q Consensus 21 ~~~~~~~~~~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~ 83 (590)
+|....++.....++|.+...|....|.+..--...+|..++...+|-+.+ |.|-..+|.
T Consensus 19 ~~k~~~~~~~q~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~ld---l~y~nnEL~ 78 (111)
T 2c60_A 19 YFQSMGHSNRQSDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD---LHYMNNELS 78 (111)
T ss_dssp -----------CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCCE---EEEECSSCE
T ss_pred eeecCCCcccccceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---eEEecceEE
Confidence 454333444578899999999999999999999999999999999998765 777766653
No 302
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=25.59 E-value=1.5e+02 Score=30.13 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=38.9
Q ss_pred ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC-EEcCC-CCcccccC
Q 007773 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-EELED-QRLITDIC 171 (590)
Q Consensus 119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G-k~LeD-~~tL~dy~ 171 (590)
-....+.+....|+..+++++++..++. +++|.|.|.+ ...-+ ......|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~--~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCC--STTEEEESSSSEECCCSSCBTTSSC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCC--hhhhHHHhcCCCCCCCCCCccccCC
Confidence 3456678889999999999999999998 8999999988 33333 33344443
No 303
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=25.28 E-value=1.7e+02 Score=24.21 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=47.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhh-CCCc----cceEEEEcCcc--cccCCccccccCcccccceeEE
Q 007773 44 VIPMRVMESDSIASVKLRIQSYN-GFFV----KKQKLVFEGRE--LARSNSRVRDYGLADGNVLHLV 103 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~-Gip~----~~QrLvf~Gk~--L~~D~~tL~dygI~~gstL~Lv 103 (590)
...+.|+..+|+.++-.++.... |..+ .-.+...+|.. +. .+.++++.||+.-..|.+.
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~P-r~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFP-RDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCC-TTCBHHHHCCCTTCEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCC-CCCEeeccCCCcceEEEEE
Confidence 56778999999999999998773 4322 24578899998 98 7999999999988777654
No 304
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=22.21 E-value=43 Score=25.82 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCHhhHhcccccC
Q 007773 516 TMLLKKGVDRGLTPFDIGCIMCRK 539 (590)
Q Consensus 516 t~~Lk~~~~~gl~~~~i~~~~~r~ 539 (590)
..|+++|-+.|+|+.||..++...
T Consensus 16 l~LI~~Ak~lGlsleEIrefL~l~ 39 (57)
T 1b0n_B 16 VELMVEAKEANISPEEIRKYLLLN 39 (57)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 358999999999999999998764
No 305
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=21.37 E-value=1.9e+02 Score=22.85 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=38.8
Q ss_pred EEecCCCCHHHHHHHHHHhhC------C-----CccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773 47 MRVMESDSIASVKLRIQSYNG------F-----FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (590)
Q Consensus 47 l~V~~sdTV~~LK~kIq~~~G------i-----p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd 108 (590)
+++....||.++...+..... + ....-.+..+|+...+ . .-.++-+++|+.|.++....|
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~-~-~~~~~~l~~gD~V~i~ppv~G 89 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITS-M-KGLDTEIKDDDKIDLFPPVAG 89 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGG-T-CSSSCBCCTTCEEEEECCTTC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccc-c-CCCCcCCCCCCEEEEeCCCCC
Confidence 345566899999999887641 1 0123356678887651 1 223556889999988766554
No 306
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=20.70 E-value=1.6e+02 Score=29.26 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=45.7
Q ss_pred CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccc-eEEEEcCc-----ccccCCccccccC
Q 007773 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFEGR-----ELARSNSRVRDYG 93 (590)
Q Consensus 31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf~Gk-----~L~~D~~tL~dyg 93 (590)
...|.+.| .++|....+.|++..|+.+|=..|.++.|+.... --|.|... -|. .+..+.+..
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~k~i~~q~ 83 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLD-SAKEIKKQV 83 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECC-TTSBHHHHC
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhc-cchhHHHhc
Confidence 56788999 6799999999999999999999999999987543 34554321 143 566666654
No 307
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.50 E-value=1.1e+02 Score=26.22 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=42.0
Q ss_pred ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--E----CCEEcCCCCccccc
Q 007773 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--C----DGEELEDQRLITDI 170 (590)
Q Consensus 110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f----~Gk~LeD~~tL~dy 170 (590)
..|.|-..+|....+.|+..+|+.++=++++.+.+...++. -.|+ + --+.++|+..+-+.
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~-WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDET-WGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCC-CCEEEEETTTTEEEEECSSSCHHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCC-eEEEEecCCCCcEEeccCchhHHHH
Confidence 34555567899999999999999999999999988652222 2222 1 22557777766554
No 308
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=20.41 E-value=3.7e+02 Score=22.22 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=46.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhh-CC-----CccceEEEEcC--cccccCCccccccCcccccceeEEe
Q 007773 44 VIPMRVMESDSIASVKLRIQSYN-GF-----FVKKQKLVFEG--RELARSNSRVRDYGLADGNVLHLVL 104 (590)
Q Consensus 44 t~~l~V~~sdTV~~LK~kIq~~~-Gi-----p~~~QrLvf~G--k~L~~D~~tL~dygI~~gstL~Lvl 104 (590)
...+.|+..+|+.++-.+++... |. |..-.+..++| +.+. .+.|+.+.||..-..|.+..
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~p-r~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFP-RGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEEC-TTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCC-CCCEeeccCCCCceEEEEEE
Confidence 56778999999999999998763 32 22245777888 8898 78999999999887776543
No 309
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=20.20 E-value=2.3e+02 Score=23.37 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=42.9
Q ss_pred EEEEEEe-------CC-eEEEEEecCCCCHHHHHHHHHHhhC-CCc---------cce-------EEEEcCcccccCCcc
Q 007773 34 ILIFLSV-------GG-SVIPMRVMESDSIASVKLRIQSYNG-FFV---------KKQ-------KLVFEGRELARSNSR 88 (590)
Q Consensus 34 M~I~Vtl-------~G-~t~~l~V~~sdTV~~LK~kIq~~~G-ip~---------~~Q-------rLvf~Gk~L~~D~~t 88 (590)
|+|.|.+ .| +...++ ..||.+|...+..... +.. ... .+..+|+... .. .
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~-~~-~ 78 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIR-HL-E 78 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGG-GT-T
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcc-cc-C
Confidence 6777732 12 344444 6899999999887731 111 012 4667787664 11 2
Q ss_pred ccccCcccccceeEEeeeccc
Q 007773 89 VRDYGLADGNVLHLVLRLSDL 109 (590)
Q Consensus 89 L~dygI~~gstL~LvlrLsd~ 109 (590)
-.++-+++|+.|.++..+.|+
T Consensus 79 ~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 79 GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp STTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCCEEEEECCCCCC
Confidence 235678899999887766543
No 310
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=20.15 E-value=1.1e+02 Score=28.17 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=27.2
Q ss_pred CCCEEEEEEeCCeEEEEEecCCCCHHHHHHH
Q 007773 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLR 61 (590)
Q Consensus 31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~k 61 (590)
.+.|.|.++++|+.+.+++.++.|+.++-..
T Consensus 7 ~~~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 7 SQLMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred CCcceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 4679999999999999999999999887654
Done!