Query 007774
Match_columns 590
No_of_seqs 323 out of 2805
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 15:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0348 ATP-dependent RNA heli 100.0 3E-113 7E-118 844.9 37.3 553 9-578 127-685 (708)
2 KOG0345 ATP-dependent RNA heli 100.0 1.4E-95 3E-100 711.1 39.7 445 17-556 3-452 (567)
3 KOG0342 ATP-dependent RNA heli 100.0 2.7E-94 5.9E-99 707.1 37.9 458 13-568 77-535 (543)
4 KOG0343 RNA Helicase [RNA proc 100.0 3.6E-92 7.8E-97 697.6 39.0 445 16-557 67-512 (758)
5 KOG0330 ATP-dependent RNA heli 100.0 2E-79 4.3E-84 585.0 30.7 368 17-463 60-428 (476)
6 KOG0338 ATP-dependent RNA heli 100.0 1.8E-75 4E-80 574.0 33.8 361 18-454 181-544 (691)
7 KOG0331 ATP-dependent RNA heli 100.0 3.5E-74 7.5E-79 586.2 33.5 367 18-452 91-457 (519)
8 COG0513 SrmB Superfamily II DN 100.0 2E-71 4.4E-76 591.5 40.3 362 18-454 29-392 (513)
9 KOG0346 RNA helicase [RNA proc 100.0 1.5E-71 3.3E-76 537.8 32.3 451 18-557 19-517 (569)
10 KOG0340 ATP-dependent RNA heli 100.0 1.5E-71 3.2E-76 525.0 29.4 375 15-463 4-382 (442)
11 KOG0328 Predicted ATP-dependen 100.0 1.6E-68 3.5E-73 489.2 27.1 374 10-463 19-394 (400)
12 KOG0333 U5 snRNP-like RNA heli 100.0 6.8E-68 1.5E-72 522.7 31.3 377 18-453 245-634 (673)
13 PRK04837 ATP-dependent RNA hel 100.0 1.7E-65 3.7E-70 540.4 42.3 384 13-468 3-390 (423)
14 KOG0326 ATP-dependent RNA heli 100.0 1.1E-66 2.4E-71 484.7 19.3 365 17-462 84-449 (459)
15 PRK11634 ATP-dependent RNA hel 100.0 1.5E-63 3.2E-68 540.5 45.6 367 18-463 6-373 (629)
16 PRK11776 ATP-dependent RNA hel 100.0 7.3E-64 1.6E-68 533.7 42.1 366 17-462 3-369 (460)
17 PRK10590 ATP-dependent RNA hel 100.0 1.4E-63 3.1E-68 529.0 41.4 367 18-458 1-368 (456)
18 PTZ00110 helicase; Provisional 100.0 1.6E-63 3.6E-68 536.0 42.2 364 18-453 130-494 (545)
19 PRK04537 ATP-dependent RNA hel 100.0 2.7E-63 5.8E-68 535.9 41.4 373 16-459 7-381 (572)
20 KOG0336 ATP-dependent RNA heli 100.0 3.9E-64 8.4E-69 481.7 26.1 363 16-451 217-580 (629)
21 KOG0347 RNA helicase [RNA proc 100.0 2.6E-65 5.5E-70 506.7 18.4 371 15-454 178-581 (731)
22 PLN00206 DEAD-box ATP-dependen 100.0 1.8E-62 4E-67 526.6 40.8 363 18-452 121-484 (518)
23 KOG0341 DEAD-box protein abstr 100.0 1.6E-64 3.5E-69 481.2 16.7 361 18-452 170-538 (610)
24 KOG0335 ATP-dependent RNA heli 100.0 9.5E-63 2.1E-67 493.5 28.9 367 19-451 75-452 (482)
25 PRK11192 ATP-dependent RNA hel 100.0 6E-61 1.3E-65 508.3 42.7 361 18-454 1-363 (434)
26 PRK01297 ATP-dependent RNA hel 100.0 9.8E-60 2.1E-64 503.2 43.7 379 18-468 87-469 (475)
27 KOG0337 ATP-dependent RNA heli 100.0 3.1E-60 6.8E-65 457.2 27.1 360 17-454 20-379 (529)
28 KOG0339 ATP-dependent RNA heli 100.0 2.4E-59 5.2E-64 459.7 29.4 363 15-451 220-583 (731)
29 KOG0350 DEAD-box ATP-dependent 100.0 9.6E-59 2.1E-63 455.7 28.9 380 19-454 128-552 (620)
30 PTZ00424 helicase 45; Provisio 100.0 2.4E-57 5.3E-62 477.2 41.1 366 18-463 28-395 (401)
31 KOG0334 RNA helicase [RNA proc 100.0 2.6E-58 5.5E-63 492.0 27.6 365 17-454 364-731 (997)
32 KOG0327 Translation initiation 100.0 1.2E-57 2.6E-62 437.5 25.1 363 19-463 27-391 (397)
33 KOG0332 ATP-dependent RNA heli 100.0 2.5E-57 5.3E-62 431.0 25.5 371 9-461 81-463 (477)
34 TIGR03817 DECH_helic helicase/ 100.0 1.2E-52 2.6E-57 464.1 38.7 374 24-453 20-398 (742)
35 KOG4284 DEAD box protein [Tran 100.0 5.1E-54 1.1E-58 432.6 21.6 347 18-444 25-380 (980)
36 KOG0344 ATP-dependent RNA heli 100.0 4.9E-52 1.1E-56 418.5 24.2 363 19-453 133-505 (593)
37 TIGR00614 recQ_fam ATP-depende 100.0 8.8E-50 1.9E-54 424.8 34.2 329 33-454 3-344 (470)
38 PLN03137 ATP-dependent DNA hel 100.0 3.7E-49 8.1E-54 432.4 37.1 343 18-453 435-797 (1195)
39 PRK11057 ATP-dependent DNA hel 100.0 8.7E-48 1.9E-52 419.8 37.0 337 23-454 7-354 (607)
40 PRK13767 ATP-dependent helicas 100.0 1.4E-46 3.1E-51 424.0 37.5 360 25-442 18-397 (876)
41 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.3E-46 5.1E-51 405.4 33.7 330 30-442 5-390 (844)
42 TIGR01389 recQ ATP-dependent D 100.0 8.3E-46 1.8E-50 405.7 35.4 332 31-454 3-342 (591)
43 TIGR00580 mfd transcription-re 100.0 3.3E-45 7.2E-50 408.1 36.4 336 24-454 435-787 (926)
44 PRK10917 ATP-dependent DNA hel 100.0 1.7E-44 3.8E-49 397.8 40.6 344 26-463 247-615 (681)
45 PRK02362 ski2-like helicase; P 100.0 4E-45 8.7E-50 408.8 34.0 364 18-443 1-397 (737)
46 KOG0329 ATP-dependent RNA heli 100.0 7.6E-47 1.6E-51 341.9 15.0 336 15-463 39-377 (387)
47 PRK00254 ski2-like helicase; P 100.0 2.8E-44 6E-49 401.1 34.3 363 19-451 2-397 (720)
48 PRK10689 transcription-repair 100.0 1.6E-43 3.6E-48 402.7 36.5 323 25-442 585-918 (1147)
49 TIGR00643 recG ATP-dependent D 100.0 8.1E-43 1.8E-47 382.4 35.5 345 26-462 221-591 (630)
50 PRK01172 ski2-like helicase; P 100.0 2.3E-42 5.1E-47 384.1 34.6 364 18-450 1-386 (674)
51 COG1201 Lhr Lhr-like helicases 100.0 2.1E-41 4.5E-46 364.9 34.3 349 25-442 8-361 (814)
52 PHA02653 RNA helicase NPH-II; 100.0 4.7E-41 1E-45 362.8 34.3 386 43-521 166-585 (675)
53 PRK09401 reverse gyrase; Revie 100.0 2.1E-41 4.6E-46 386.3 32.5 321 29-430 69-431 (1176)
54 PRK09751 putative ATP-dependen 100.0 5E-41 1.1E-45 383.8 33.4 348 61-442 1-382 (1490)
55 KOG0349 Putative DEAD-box RNA 100.0 7.1E-42 1.5E-46 330.6 19.9 315 96-442 289-614 (725)
56 TIGR01054 rgy reverse gyrase. 100.0 1.6E-39 3.4E-44 371.6 33.3 309 27-415 65-409 (1171)
57 PRK14701 reverse gyrase; Provi 100.0 7.8E-40 1.7E-44 380.6 30.9 348 27-452 66-465 (1638)
58 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.3E-39 5E-44 357.9 32.7 313 45-446 6-339 (819)
59 COG1111 MPH1 ERCC4-like helica 100.0 2.4E-39 5.1E-44 322.1 27.7 368 40-444 14-482 (542)
60 PRK12898 secA preprotein trans 100.0 7.7E-39 1.7E-43 340.0 31.8 338 36-446 99-589 (656)
61 PRK11664 ATP-dependent RNA hel 100.0 1.1E-38 2.5E-43 353.3 29.4 310 47-445 11-341 (812)
62 PHA02558 uvsW UvsW helicase; P 100.0 1.7E-38 3.7E-43 339.8 29.3 331 40-439 113-448 (501)
63 TIGR01587 cas3_core CRISPR-ass 100.0 1.4E-38 3.1E-43 329.3 26.8 301 58-441 1-334 (358)
64 COG0514 RecQ Superfamily II DN 100.0 2.4E-38 5.3E-43 329.6 28.2 337 28-454 4-348 (590)
65 PRK09200 preprotein translocas 100.0 1.3E-37 2.7E-42 337.7 30.6 337 35-445 73-543 (790)
66 TIGR03714 secA2 accessory Sec 100.0 1.8E-36 4E-41 325.4 29.7 361 37-445 67-539 (762)
67 PRK13766 Hef nuclease; Provisi 100.0 3.4E-35 7.3E-40 332.9 36.7 358 40-442 14-478 (773)
68 TIGR00963 secA preprotein tran 100.0 2E-35 4.3E-40 315.3 31.8 337 35-446 51-520 (745)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 8E-35 1.7E-39 298.2 30.8 314 45-428 1-357 (357)
70 KOG0354 DEAD-box like helicase 100.0 5.5E-35 1.2E-39 307.7 27.7 385 25-444 47-530 (746)
71 COG1204 Superfamily II helicas 100.0 2.4E-34 5.1E-39 314.9 31.1 365 24-453 15-419 (766)
72 COG1205 Distinct helicase fami 100.0 2E-34 4.3E-39 319.9 30.9 352 25-441 55-420 (851)
73 COG1202 Superfamily II helicas 100.0 8.8E-35 1.9E-39 291.0 24.0 346 16-443 192-553 (830)
74 TIGR00603 rad25 DNA repair hel 100.0 1.3E-34 2.9E-39 311.2 23.4 347 41-457 255-627 (732)
75 PRK05580 primosome assembly pr 100.0 2.1E-32 4.5E-37 300.8 31.1 336 41-452 144-558 (679)
76 COG1200 RecG RecG-like helicas 100.0 7.9E-32 1.7E-36 279.8 32.1 349 22-463 244-617 (677)
77 PRK11131 ATP-dependent RNA hel 100.0 3.3E-32 7.2E-37 306.4 30.4 307 44-444 77-412 (1294)
78 PRK04914 ATP-dependent helicas 100.0 4E-32 8.6E-37 302.1 29.9 376 41-463 152-626 (956)
79 KOG0352 ATP-dependent DNA heli 100.0 1.3E-32 2.7E-37 266.4 20.3 346 27-454 5-373 (641)
80 KOG0351 ATP-dependent DNA heli 100.0 1.4E-31 3E-36 294.9 26.7 338 28-455 251-604 (941)
81 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.8E-30 3.9E-35 293.6 30.8 316 38-444 61-405 (1283)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 3E-30 6.5E-35 274.6 27.1 351 36-444 105-492 (1230)
83 PRK09694 helicase Cas3; Provis 100.0 1.4E-29 3E-34 280.2 32.4 339 40-432 285-664 (878)
84 cd00268 DEADc DEAD-box helicas 100.0 5.7E-30 1.2E-34 243.3 24.3 202 20-243 1-202 (203)
85 TIGR00595 priA primosomal prot 100.0 1.7E-29 3.6E-34 268.2 29.7 309 60-444 1-382 (505)
86 PRK13104 secA preprotein trans 100.0 4.1E-29 8.9E-34 270.6 30.3 372 36-444 78-588 (896)
87 COG1061 SSL2 DNA or RNA helica 100.0 8.1E-30 1.7E-34 267.6 20.7 332 41-435 36-382 (442)
88 PRK12899 secA preprotein trans 100.0 6.8E-28 1.5E-32 260.5 29.3 151 20-183 64-229 (970)
89 COG1197 Mfd Transcription-repa 100.0 2.8E-27 6.1E-32 259.1 33.0 327 23-444 577-914 (1139)
90 PRK12904 preprotein translocas 100.0 2.7E-27 5.8E-32 256.5 31.0 333 36-444 77-574 (830)
91 KOG0353 ATP-dependent DNA heli 100.0 8.9E-28 1.9E-32 229.5 23.2 331 21-444 74-468 (695)
92 PRK12906 secA preprotein trans 100.0 3.2E-27 6.9E-32 254.9 27.3 338 32-444 72-554 (796)
93 PRK11448 hsdR type I restricti 100.0 3.7E-27 8E-32 268.3 24.4 350 41-432 413-802 (1123)
94 PRK13107 preprotein translocas 99.9 1.1E-25 2.5E-30 243.1 28.0 373 36-444 78-592 (908)
95 PF00270 DEAD: DEAD/DEAH box h 99.9 2.7E-26 5.8E-31 211.4 19.8 168 43-232 1-169 (169)
96 KOG0951 RNA helicase BRR2, DEA 99.9 5.4E-26 1.2E-30 245.1 25.0 381 24-458 295-717 (1674)
97 PLN03142 Probable chromatin-re 99.9 6.2E-25 1.4E-29 245.5 26.4 362 41-452 169-610 (1033)
98 COG4581 Superfamily II RNA hel 99.9 9.3E-25 2E-29 239.5 27.1 368 35-443 114-537 (1041)
99 COG4098 comFA Superfamily II D 99.9 7.7E-24 1.7E-28 200.9 28.8 311 41-449 97-422 (441)
100 KOG0947 Cytoplasmic exosomal R 99.9 2E-24 4.3E-29 227.9 22.6 367 35-442 292-722 (1248)
101 KOG0950 DNA polymerase theta/e 99.9 1.2E-24 2.6E-29 231.4 18.6 384 24-453 206-621 (1008)
102 KOG0948 Nuclear exosomal RNA h 99.9 5.6E-24 1.2E-28 219.3 19.6 364 36-442 125-538 (1041)
103 TIGR00631 uvrb excinuclease AB 99.9 7E-22 1.5E-26 215.0 32.5 136 298-453 423-563 (655)
104 COG1203 CRISPR-associated heli 99.9 3.2E-22 6.9E-27 222.5 25.2 335 42-452 196-559 (733)
105 COG1198 PriA Primosomal protei 99.9 4.8E-22 1.1E-26 214.0 25.6 339 41-453 198-613 (730)
106 COG1110 Reverse gyrase [DNA re 99.9 3.6E-21 7.7E-26 206.0 29.8 302 29-414 71-416 (1187)
107 TIGR01407 dinG_rel DnaQ family 99.9 5.8E-21 1.3E-25 216.9 31.3 131 304-451 660-824 (850)
108 PRK05298 excinuclease ABC subu 99.9 1.9E-20 4.2E-25 205.4 30.7 125 299-443 428-557 (652)
109 COG1643 HrpA HrpA-like helicas 99.9 9.5E-21 2.1E-25 207.0 27.8 315 42-443 51-387 (845)
110 PRK12900 secA preprotein trans 99.9 1.3E-21 2.9E-26 212.5 19.3 126 299-445 580-713 (1025)
111 COG4096 HsdR Type I site-speci 99.9 7.7E-21 1.7E-25 200.7 21.3 329 41-430 165-525 (875)
112 TIGR00348 hsdR type I site-spe 99.9 1E-20 2.2E-25 208.3 20.6 341 42-430 239-634 (667)
113 COG0556 UvrB Helicase subunit 99.9 1E-19 2.2E-24 182.6 25.3 125 298-442 427-556 (663)
114 KOG0922 DEAH-box RNA helicase 99.8 2.3E-19 5E-24 185.4 24.4 319 44-444 54-391 (674)
115 smart00487 DEXDc DEAD-like hel 99.8 2.3E-19 4.9E-24 169.2 21.7 187 37-247 4-192 (201)
116 PRK07246 bifunctional ATP-depe 99.8 1.3E-18 2.9E-23 194.8 31.1 132 38-183 243-450 (820)
117 KOG0920 ATP-dependent RNA heli 99.8 4.6E-19 1E-23 193.0 26.4 351 42-443 174-544 (924)
118 KOG1123 RNA polymerase II tran 99.8 5.8E-21 1.3E-25 189.2 9.2 343 11-432 275-636 (776)
119 KOG0385 Chromatin remodeling c 99.8 1.4E-18 2.9E-23 180.7 25.5 344 41-439 167-593 (971)
120 PRK12326 preprotein translocas 99.8 1.5E-17 3.2E-22 176.5 29.8 336 36-445 74-549 (764)
121 KOG0949 Predicted helicase, DE 99.8 1.4E-18 3E-23 184.4 21.9 164 38-228 509-674 (1330)
122 KOG0387 Transcription-coupled 99.8 9.1E-19 2E-23 182.9 19.5 364 41-453 205-671 (923)
123 KOG0390 DNA repair protein, SN 99.8 9E-18 2E-22 180.0 27.0 373 41-456 238-723 (776)
124 KOG0923 mRNA splicing factor A 99.8 1E-17 2.2E-22 171.5 21.2 326 42-454 266-615 (902)
125 PRK13103 secA preprotein trans 99.8 4E-17 8.7E-22 177.4 26.6 372 36-444 78-592 (913)
126 KOG4150 Predicted ATP-dependen 99.8 2.9E-18 6.2E-23 172.4 13.2 362 29-453 274-652 (1034)
127 cd00079 HELICc Helicase superf 99.8 9E-18 1.9E-22 147.3 13.4 121 300-439 11-131 (131)
128 KOG0392 SNF2 family DNA-depend 99.8 4.4E-17 9.5E-22 176.7 20.2 362 42-442 976-1453(1549)
129 KOG0924 mRNA splicing factor A 99.7 1.4E-16 3E-21 163.6 19.8 322 41-442 356-696 (1042)
130 PF00271 Helicase_C: Helicase 99.7 6.9E-18 1.5E-22 133.6 7.9 72 360-431 7-78 (78)
131 KOG0926 DEAH-box RNA helicase 99.7 7.6E-16 1.6E-20 160.8 21.7 341 39-441 242-702 (1172)
132 PF13959 DUF4217: Domain of un 99.7 1.5E-17 3.3E-22 124.2 6.5 63 494-557 2-64 (65)
133 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.8E-14 3.8E-19 154.8 32.6 60 51-117 11-70 (636)
134 PRK12903 secA preprotein trans 99.7 3.8E-15 8.2E-20 160.5 26.9 333 36-444 74-540 (925)
135 KOG0925 mRNA splicing factor A 99.7 2.6E-15 5.6E-20 149.1 23.2 343 13-442 20-386 (699)
136 CHL00122 secA preprotein trans 99.7 4.4E-15 9.6E-20 161.0 26.4 132 36-182 72-209 (870)
137 PRK08074 bifunctional ATP-depe 99.7 9.4E-15 2E-19 167.0 29.2 133 304-452 738-904 (928)
138 KOG0384 Chromodomain-helicase 99.7 7.5E-17 1.6E-21 175.6 11.0 359 40-453 369-823 (1373)
139 cd00046 DEXDc DEAD-like helica 99.7 1.3E-15 2.8E-20 135.0 17.0 144 57-225 1-144 (144)
140 KOG1000 Chromatin remodeling p 99.7 4.9E-15 1.1E-19 147.4 20.8 334 41-438 198-596 (689)
141 COG4889 Predicted helicase [Ge 99.7 5.7E-17 1.2E-21 170.2 5.7 362 40-431 160-573 (1518)
142 PF04851 ResIII: Type III rest 99.7 4.1E-16 8.9E-21 145.4 11.0 154 41-226 3-183 (184)
143 KOG0389 SNF2 family DNA-depend 99.6 1.4E-15 3.1E-20 159.0 13.7 372 38-458 397-904 (941)
144 PRK11747 dinG ATP-dependent DN 99.6 2.6E-13 5.6E-18 150.5 31.5 119 302-442 519-673 (697)
145 PRK12902 secA preprotein trans 99.6 1.8E-13 3.8E-18 148.3 27.5 132 36-182 81-218 (939)
146 KOG0953 Mitochondrial RNA heli 99.6 6.8E-14 1.5E-18 141.4 18.5 282 56-453 191-486 (700)
147 smart00490 HELICc helicase sup 99.6 5.2E-15 1.1E-19 118.1 8.1 72 360-431 11-82 (82)
148 COG1199 DinG Rad3-related DNA 99.6 4.1E-13 8.9E-18 150.0 24.8 121 302-442 463-616 (654)
149 PRK14873 primosome assembly pr 99.5 1.6E-13 3.5E-18 149.5 18.9 314 60-453 164-548 (665)
150 KOG0951 RNA helicase BRR2, DEA 99.5 7.4E-13 1.6E-17 144.8 23.0 361 6-452 1113-1503(1674)
151 TIGR00604 rad3 DNA repair heli 99.5 2.9E-12 6.2E-17 143.4 25.9 76 36-117 5-84 (705)
152 TIGR02562 cas3_yersinia CRISPR 99.5 8.9E-13 1.9E-17 145.1 20.7 348 42-432 409-881 (1110)
153 KOG1002 Nucleotide excision re 99.5 3.8E-12 8.3E-17 126.9 21.4 137 300-453 619-761 (791)
154 PF06862 DUF1253: Protein of u 99.5 4E-11 8.6E-16 122.9 28.5 313 92-450 36-422 (442)
155 KOG4439 RNA polymerase II tran 99.5 2.6E-12 5.6E-17 133.3 18.1 125 297-439 725-852 (901)
156 PRK12901 secA preprotein trans 99.4 1.6E-11 3.4E-16 134.8 18.1 125 299-444 610-742 (1112)
157 KOG0386 Chromatin remodeling c 99.4 5E-12 1.1E-16 136.0 13.0 353 41-443 394-836 (1157)
158 COG0553 HepA Superfamily II DN 99.4 2.1E-11 4.5E-16 141.7 19.2 355 40-439 337-816 (866)
159 KOG0391 SNF2 family DNA-depend 99.3 8.3E-11 1.8E-15 127.7 19.1 120 301-439 1260-1381(1958)
160 KOG2340 Uncharacterized conser 99.3 6.4E-11 1.4E-15 119.5 16.7 364 40-445 215-670 (698)
161 KOG0388 SNF2 family DNA-depend 99.3 1.5E-10 3.2E-15 120.2 19.4 121 300-439 1027-1148(1185)
162 PF02399 Herpes_ori_bp: Origin 99.3 1.8E-10 3.9E-15 124.1 20.7 321 58-443 51-388 (824)
163 KOG1015 Transcription regulato 99.3 1.5E-10 3.3E-15 123.4 16.6 141 297-439 1122-1271(1567)
164 smart00489 DEXDc3 DEAD-like he 99.2 1.3E-10 2.7E-15 115.6 13.8 76 37-116 5-84 (289)
165 smart00488 DEXDc2 DEAD-like he 99.2 1.3E-10 2.7E-15 115.6 13.8 76 37-116 5-84 (289)
166 PF07652 Flavi_DEAD: Flaviviru 99.2 4.2E-11 9.1E-16 102.6 7.3 138 55-229 3-140 (148)
167 PF00176 SNF2_N: SNF2 family N 99.2 1.4E-10 3.1E-15 117.0 11.5 154 45-226 1-173 (299)
168 COG0610 Type I site-specific r 99.2 1.6E-09 3.5E-14 123.7 20.8 352 57-441 274-651 (962)
169 PF07517 SecA_DEAD: SecA DEAD- 98.9 6E-08 1.3E-12 93.9 16.6 133 35-182 72-210 (266)
170 COG0653 SecA Preprotein transl 98.9 5.2E-08 1.1E-12 106.1 17.2 131 37-182 77-213 (822)
171 KOG0921 Dosage compensation co 98.6 4E-07 8.6E-12 97.8 12.3 347 50-439 387-770 (1282)
172 PRK15483 type III restriction- 98.6 5.2E-07 1.1E-11 100.7 12.8 68 386-453 501-578 (986)
173 TIGR00596 rad1 DNA repair prot 98.4 4E-06 8.7E-11 93.6 16.2 68 144-227 7-74 (814)
174 COG3587 Restriction endonuclea 98.4 2.7E-05 5.8E-10 84.1 19.1 68 386-453 483-563 (985)
175 PF13086 AAA_11: AAA domain; P 98.3 3.7E-06 8E-11 81.3 10.0 73 42-115 2-75 (236)
176 KOG0952 DNA/RNA helicase MER3/ 98.3 4.8E-07 1E-11 99.0 3.3 130 56-197 943-1073(1230)
177 PF02562 PhoH: PhoH-like prote 98.2 6.2E-06 1.3E-10 76.7 9.6 132 40-199 3-145 (205)
178 PF13604 AAA_30: AAA domain; P 98.2 1.1E-05 2.4E-10 75.6 10.3 63 41-112 1-65 (196)
179 PF13307 Helicase_C_2: Helicas 98.2 8.5E-06 1.8E-10 74.3 8.7 108 318-442 8-149 (167)
180 KOG1016 Predicted DNA helicase 98.1 3E-05 6.6E-10 82.3 12.7 124 318-441 718-845 (1387)
181 PF09848 DUF2075: Uncharacteri 98.0 4.2E-05 9.2E-10 78.8 10.3 95 58-183 3-97 (352)
182 KOG1001 Helicase-like transcri 97.9 1.5E-05 3.3E-10 87.1 6.9 102 320-438 540-643 (674)
183 PF13872 AAA_34: P-loop contai 97.9 7.2E-05 1.6E-09 72.9 10.7 162 41-232 37-227 (303)
184 PRK10536 hypothetical protein; 97.9 0.00029 6.4E-09 67.5 14.4 60 38-104 56-115 (262)
185 PF12340 DUF3638: Protein of u 97.9 0.0001 2.2E-09 69.3 10.6 90 18-119 3-95 (229)
186 PRK10875 recD exonuclease V su 97.9 0.00018 3.9E-09 78.6 14.2 148 28-199 138-291 (615)
187 KOG1803 DNA helicase [Replicat 97.8 5.2E-05 1.1E-09 79.2 8.0 65 41-114 185-250 (649)
188 PF13245 AAA_19: Part of AAA d 97.8 0.0001 2.2E-09 57.2 7.7 60 49-113 2-62 (76)
189 KOG1132 Helicase of the DEAD s 97.8 0.00015 3.2E-09 79.0 11.4 80 36-116 17-133 (945)
190 TIGR01448 recD_rel helicase, p 97.7 0.00039 8.4E-09 78.1 13.9 72 32-111 315-386 (720)
191 TIGR01447 recD exodeoxyribonuc 97.7 0.00045 9.8E-09 75.3 14.0 134 43-199 147-285 (586)
192 PF00580 UvrD-helicase: UvrD/R 97.4 0.00052 1.1E-08 69.5 8.4 125 42-180 1-126 (315)
193 COG3421 Uncharacterized protei 97.2 0.00035 7.6E-09 72.9 4.8 115 61-183 2-126 (812)
194 PRK13889 conjugal transfer rel 97.1 0.0041 8.9E-08 71.4 12.5 64 37-110 343-407 (988)
195 PF13401 AAA_22: AAA domain; P 97.1 0.0065 1.4E-07 52.7 11.2 22 56-77 4-25 (131)
196 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0085 1.8E-07 67.7 14.3 63 38-110 350-413 (744)
197 PF05970 PIF1: PIF1-like helic 97.0 0.0032 6.9E-08 65.1 9.5 59 42-109 2-66 (364)
198 PRK04296 thymidine kinase; Pro 96.9 0.0018 3.9E-08 60.4 6.2 99 57-199 3-104 (190)
199 TIGR00376 DNA helicase, putati 96.9 0.0032 6.9E-08 69.7 8.7 66 41-115 157-223 (637)
200 PF14617 CMS1: U3-containing 9 96.9 0.0023 5E-08 61.5 6.6 87 91-180 124-212 (252)
201 smart00492 HELICc3 helicase su 96.9 0.0065 1.4E-07 53.4 8.9 46 370-415 31-79 (141)
202 PRK08181 transposase; Validate 96.7 0.016 3.5E-07 56.8 11.4 58 43-110 89-150 (269)
203 PRK13826 Dtr system oriT relax 96.7 0.027 5.9E-07 65.2 14.6 76 24-110 366-442 (1102)
204 PHA02533 17 large terminase pr 96.7 0.021 4.5E-07 61.8 12.8 136 42-198 60-196 (534)
205 KOG1802 RNA helicase nonsense 96.7 0.0043 9.2E-08 65.7 7.1 73 36-116 405-477 (935)
206 smart00491 HELICc2 helicase su 96.7 0.0087 1.9E-07 52.7 8.2 43 373-415 31-80 (142)
207 PRK06526 transposase; Provisio 96.6 0.0086 1.9E-07 58.4 8.5 30 51-80 93-122 (254)
208 KOG0298 DEAD box-containing he 96.6 0.006 1.3E-07 69.3 7.9 157 56-234 374-559 (1394)
209 PF13871 Helicase_C_4: Helicas 96.5 0.0091 2E-07 58.2 7.8 78 377-454 52-141 (278)
210 PRK07952 DNA replication prote 96.4 0.041 8.9E-07 53.2 11.6 19 57-75 100-118 (244)
211 cd01124 KaiC KaiC is a circadi 96.3 0.045 9.8E-07 50.7 11.1 48 59-116 2-49 (187)
212 PRK06921 hypothetical protein; 96.3 0.065 1.4E-06 52.7 12.6 46 55-109 116-161 (266)
213 cd00009 AAA The AAA+ (ATPases 96.3 0.051 1.1E-06 47.5 10.9 18 56-73 19-36 (151)
214 COG1875 NYN ribonuclease and A 96.2 0.042 9E-07 54.8 10.3 65 35-105 222-288 (436)
215 PRK06893 DNA replication initi 96.2 0.025 5.4E-07 54.4 8.8 44 169-226 91-135 (229)
216 PRK08727 hypothetical protein; 96.1 0.038 8.1E-07 53.3 9.7 18 57-74 42-59 (233)
217 PRK06835 DNA replication prote 96.1 0.14 3E-06 52.0 14.0 46 55-110 182-227 (329)
218 cd01120 RecA-like_NTPases RecA 96.0 0.18 3.9E-06 45.1 13.6 37 59-104 2-38 (165)
219 PRK00149 dnaA chromosomal repl 96.0 0.05 1.1E-06 58.1 11.3 31 169-199 211-242 (450)
220 KOG1805 DNA replication helica 96.0 0.028 6.1E-07 62.4 9.1 122 41-183 669-810 (1100)
221 PRK05642 DNA replication initi 96.0 0.049 1.1E-06 52.6 9.8 31 169-199 97-128 (234)
222 PF05621 TniB: Bacterial TniB 95.9 0.088 1.9E-06 51.8 11.4 107 57-197 62-172 (302)
223 PRK11054 helD DNA helicase IV; 95.9 0.057 1.2E-06 60.3 11.2 69 41-116 196-264 (684)
224 PRK14722 flhF flagellar biosyn 95.9 0.098 2.1E-06 53.7 12.0 127 20-155 83-227 (374)
225 PF00308 Bac_DnaA: Bacterial d 95.9 0.07 1.5E-06 50.9 10.3 108 58-229 36-144 (219)
226 KOG0989 Replication factor C, 95.9 0.034 7.3E-07 54.2 8.0 23 58-80 59-81 (346)
227 PRK14974 cell division protein 95.9 0.08 1.7E-06 53.7 11.1 127 58-234 142-273 (336)
228 smart00382 AAA ATPases associa 95.8 0.019 4.2E-07 49.8 6.0 41 56-105 2-42 (148)
229 TIGR00362 DnaA chromosomal rep 95.8 0.064 1.4E-06 56.5 10.7 43 57-107 137-179 (405)
230 COG1484 DnaC DNA replication p 95.8 0.032 6.9E-07 54.4 7.7 68 37-114 79-153 (254)
231 PRK12377 putative replication 95.8 0.17 3.6E-06 49.1 12.6 47 56-112 101-147 (248)
232 TIGR02785 addA_Gpos recombinat 95.8 0.058 1.3E-06 64.7 11.4 124 42-180 2-126 (1232)
233 PRK14712 conjugal transfer nic 95.7 0.16 3.5E-06 61.1 14.6 63 41-110 835-901 (1623)
234 PRK08116 hypothetical protein; 95.7 0.16 3.5E-06 50.0 12.5 44 57-110 115-158 (268)
235 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.067 1.5E-06 51.3 9.7 21 55-75 37-57 (226)
236 PRK10919 ATP-dependent DNA hel 95.7 0.029 6.2E-07 63.0 8.0 70 41-117 2-71 (672)
237 PRK12723 flagellar biosynthesi 95.7 0.097 2.1E-06 54.1 11.2 22 57-78 175-196 (388)
238 PF03354 Terminase_1: Phage Te 95.7 0.043 9.3E-07 59.1 9.0 127 44-183 1-137 (477)
239 TIGR02760 TraI_TIGR conjugativ 95.6 0.12 2.5E-06 64.6 13.4 136 41-224 429-566 (1960)
240 PRK08084 DNA replication initi 95.6 0.097 2.1E-06 50.6 10.2 30 170-199 98-128 (235)
241 PRK14087 dnaA chromosomal repl 95.6 0.11 2.3E-06 55.3 11.3 111 57-229 142-253 (450)
242 PRK14088 dnaA chromosomal repl 95.5 0.13 2.7E-06 54.7 11.8 31 169-199 194-225 (440)
243 TIGR01075 uvrD DNA helicase II 95.3 0.042 9.1E-07 62.3 7.8 72 40-118 3-74 (715)
244 KOG1133 Helicase of the DEAD s 95.3 0.024 5.3E-07 60.6 5.2 45 37-82 12-60 (821)
245 PHA02544 44 clamp loader, smal 95.3 0.22 4.8E-06 50.5 12.1 47 12-74 12-61 (316)
246 TIGR02881 spore_V_K stage V sp 95.2 0.18 3.9E-06 49.6 11.1 19 57-75 43-61 (261)
247 PRK13709 conjugal transfer nic 95.1 0.21 4.6E-06 61.0 12.8 65 41-110 967-1033(1747)
248 COG2805 PilT Tfp pilus assembl 95.1 0.1 2.3E-06 50.8 8.2 25 58-83 127-151 (353)
249 PRK11773 uvrD DNA-dependent he 95.0 0.053 1.1E-06 61.6 7.4 71 41-118 9-79 (721)
250 PF05876 Terminase_GpA: Phage 95.0 0.088 1.9E-06 57.5 8.6 124 41-182 16-147 (557)
251 PRK10917 ATP-dependent DNA hel 95.0 0.12 2.6E-06 58.2 9.9 81 318-411 309-390 (681)
252 PRK11889 flhF flagellar biosyn 94.9 0.23 4.9E-06 51.0 10.6 23 57-79 242-264 (436)
253 PRK05580 primosome assembly pr 94.8 0.16 3.4E-06 57.1 10.4 96 298-412 171-266 (679)
254 TIGR00595 priA primosomal prot 94.8 0.17 3.7E-06 54.6 10.2 95 299-412 7-101 (505)
255 TIGR01074 rep ATP-dependent DN 94.7 0.092 2E-06 59.2 8.2 69 42-117 2-70 (664)
256 COG3973 Superfamily I DNA and 94.6 0.17 3.7E-06 53.8 9.1 95 21-118 185-285 (747)
257 PRK12422 chromosomal replicati 94.6 0.31 6.7E-06 51.7 11.3 49 169-231 202-251 (445)
258 PLN03025 replication factor C 94.5 0.55 1.2E-05 47.7 12.7 20 58-77 36-55 (319)
259 PHA03368 DNA packaging termina 94.5 1.1 2.5E-05 48.8 15.2 136 55-226 253-391 (738)
260 PF00448 SRP54: SRP54-type pro 94.5 1.1 2.4E-05 41.9 13.6 46 169-229 83-129 (196)
261 PRK08903 DnaA regulatory inact 94.5 0.24 5.2E-06 47.5 9.5 21 55-75 41-61 (227)
262 PRK14086 dnaA chromosomal repl 94.4 0.33 7.1E-06 53.0 11.0 47 169-229 377-424 (617)
263 TIGR01547 phage_term_2 phage t 94.3 0.27 5.9E-06 51.6 10.2 145 58-234 3-149 (396)
264 PRK06645 DNA polymerase III su 94.2 1.3 2.8E-05 47.8 15.1 20 58-77 45-64 (507)
265 PTZ00112 origin recognition co 94.2 0.73 1.6E-05 52.0 13.3 24 58-82 782-806 (1164)
266 PRK14873 primosome assembly pr 94.1 0.35 7.5E-06 53.9 10.8 97 299-413 170-266 (665)
267 PRK11331 5-methylcytosine-spec 94.1 0.16 3.4E-06 53.2 7.6 33 42-74 180-212 (459)
268 PRK13342 recombination factor 94.1 0.54 1.2E-05 49.6 11.8 18 58-75 38-55 (413)
269 cd01122 GP4d_helicase GP4d_hel 94.1 0.91 2E-05 44.8 12.9 53 53-114 27-79 (271)
270 PHA03333 putative ATPase subun 94.0 1.4 3E-05 48.4 14.5 69 42-118 170-241 (752)
271 PRK05707 DNA polymerase III su 94.0 0.24 5.2E-06 50.3 8.6 41 41-82 3-47 (328)
272 TIGR01073 pcrA ATP-dependent D 94.0 0.15 3.3E-06 58.1 7.9 72 40-118 3-74 (726)
273 TIGR02760 TraI_TIGR conjugativ 94.0 0.59 1.3E-05 58.6 13.4 62 41-110 1019-1085(1960)
274 PRK13833 conjugal transfer pro 93.9 0.15 3.3E-06 51.3 6.8 58 42-106 129-187 (323)
275 KOG0701 dsRNA-specific nucleas 93.8 0.04 8.7E-07 65.4 3.0 96 320-431 293-399 (1606)
276 PF00004 AAA: ATPase family as 93.8 1.8 3.9E-05 36.9 12.9 16 170-185 59-74 (132)
277 PF13173 AAA_14: AAA domain 93.8 0.68 1.5E-05 39.8 10.0 27 169-197 61-87 (128)
278 PRK00411 cdc6 cell division co 93.8 0.71 1.5E-05 48.4 12.1 24 57-81 56-79 (394)
279 TIGR00643 recG ATP-dependent D 93.7 0.29 6.3E-06 54.6 9.5 80 318-410 283-363 (630)
280 PRK13894 conjugal transfer ATP 93.7 0.15 3.2E-06 51.5 6.5 57 42-105 133-190 (319)
281 PRK14956 DNA polymerase III su 93.7 0.29 6.2E-06 51.8 8.7 20 58-77 42-61 (484)
282 PRK08939 primosomal protein Dn 93.6 0.63 1.4E-05 46.8 10.8 20 56-75 156-175 (306)
283 COG1444 Predicted P-loop ATPas 93.6 0.79 1.7E-05 50.9 12.1 144 38-226 211-357 (758)
284 COG0466 Lon ATP-dependent Lon 93.6 0.23 5.1E-06 54.0 7.9 112 42-199 328-447 (782)
285 PF05496 RuvB_N: Holliday junc 93.6 0.21 4.5E-06 47.1 6.6 18 58-75 52-69 (233)
286 CHL00181 cbbX CbbX; Provisiona 93.5 0.52 1.1E-05 47.0 9.8 21 56-76 59-79 (287)
287 COG2256 MGS1 ATPase related to 93.4 0.53 1.2E-05 47.9 9.6 18 58-75 50-67 (436)
288 COG1474 CDC6 Cdc6-related prot 93.4 1.3 2.8E-05 45.7 12.8 26 57-83 43-68 (366)
289 PRK07003 DNA polymerase III su 93.4 0.43 9.4E-06 53.0 9.7 20 58-77 40-59 (830)
290 PRK14958 DNA polymerase III su 93.3 0.18 4E-06 54.3 6.8 20 58-77 40-59 (509)
291 COG1110 Reverse gyrase [DNA re 93.3 0.34 7.3E-06 54.7 8.8 69 317-396 123-191 (1187)
292 TIGR00580 mfd transcription-re 93.3 0.42 9.2E-06 55.3 10.0 79 319-410 500-579 (926)
293 PF05127 Helicase_RecD: Helica 93.3 0.021 4.5E-07 52.0 -0.4 100 60-181 1-102 (177)
294 PF01695 IstB_IS21: IstB-like 93.2 0.18 3.9E-06 46.3 5.7 46 54-109 45-90 (178)
295 PTZ00293 thymidine kinase; Pro 93.2 0.68 1.5E-05 43.4 9.5 39 56-103 4-42 (211)
296 TIGR02880 cbbX_cfxQ probable R 93.1 0.98 2.1E-05 44.9 11.2 20 56-75 58-77 (284)
297 PRK14964 DNA polymerase III su 93.1 1.4 3.1E-05 47.1 12.8 45 17-77 9-56 (491)
298 PRK12402 replication factor C 93.0 1.3 2.8E-05 45.2 12.3 19 58-76 38-56 (337)
299 PRK13851 type IV secretion sys 93.0 0.16 3.4E-06 51.8 5.4 44 53-106 159-202 (344)
300 PRK11034 clpA ATP-dependent Cl 93.0 1.2 2.5E-05 50.6 12.6 20 56-75 207-226 (758)
301 PRK05563 DNA polymerase III su 93.0 1.2 2.6E-05 48.8 12.5 50 15-77 10-59 (559)
302 PRK08533 flagellar accessory p 92.9 1.1 2.5E-05 42.9 11.0 51 54-114 22-72 (230)
303 TIGR02782 TrbB_P P-type conjug 92.9 0.31 6.7E-06 48.8 7.3 58 42-106 117-175 (299)
304 KOG2004 Mitochondrial ATP-depe 92.8 0.91 2E-05 49.5 10.8 111 42-199 416-535 (906)
305 TIGR03015 pepcterm_ATPase puta 92.8 0.65 1.4E-05 45.7 9.5 34 41-74 23-61 (269)
306 PRK13341 recombination factor 92.8 0.87 1.9E-05 51.3 11.3 18 58-75 54-71 (725)
307 PRK05986 cob(I)alamin adenolsy 92.8 1.8 3.9E-05 40.0 11.4 37 54-99 20-56 (191)
308 cd00561 CobA_CobO_BtuR ATP:cor 92.7 1.7 3.7E-05 38.9 11.0 53 168-235 94-148 (159)
309 COG4626 Phage terminase-like p 92.7 1.6 3.5E-05 46.5 12.4 148 42-224 62-224 (546)
310 PRK04195 replication factor C 92.6 0.93 2E-05 48.9 11.0 51 15-75 8-58 (482)
311 COG4962 CpaF Flp pilus assembl 92.6 0.38 8.3E-06 48.0 7.3 82 13-110 135-217 (355)
312 COG0542 clpA ATP-binding subun 92.6 0.58 1.3E-05 52.3 9.4 18 58-75 523-540 (786)
313 PF05729 NACHT: NACHT domain 92.6 1 2.3E-05 40.2 9.9 47 58-108 2-48 (166)
314 PRK11823 DNA repair protein Ra 92.5 0.97 2.1E-05 48.1 10.8 51 56-116 80-130 (446)
315 PRK14723 flhF flagellar biosyn 92.5 1.5 3.4E-05 49.1 12.5 24 57-80 186-209 (767)
316 PRK06995 flhF flagellar biosyn 92.4 2 4.4E-05 45.7 12.9 127 56-199 256-390 (484)
317 COG3972 Superfamily I DNA and 92.4 0.45 9.7E-06 49.5 7.6 153 28-197 151-318 (660)
318 COG0593 DnaA ATPase involved i 92.3 0.86 1.9E-05 47.2 9.7 48 169-230 175-223 (408)
319 PF01637 Arch_ATPase: Archaeal 92.3 0.87 1.9E-05 43.4 9.5 24 56-80 20-43 (234)
320 COG1435 Tdk Thymidine kinase [ 92.3 1.4 3.1E-05 40.4 9.9 103 57-199 5-107 (201)
321 PRK07994 DNA polymerase III su 92.2 2.7 5.9E-05 46.5 14.0 19 59-77 41-59 (647)
322 PHA03372 DNA packaging termina 92.2 4.7 0.0001 43.7 15.0 156 28-225 178-337 (668)
323 TIGR03499 FlhF flagellar biosy 92.2 1.1 2.3E-05 44.6 10.0 24 56-79 194-217 (282)
324 PRK12727 flagellar biosynthesi 92.1 1.3 2.7E-05 47.5 10.8 60 20-79 301-373 (559)
325 PRK06731 flhF flagellar biosyn 92.0 2.3 5E-05 41.8 11.9 23 57-79 76-98 (270)
326 TIGR00708 cobA cob(I)alamin ad 92.0 1.7 3.6E-05 39.5 10.0 53 168-235 96-150 (173)
327 PRK05973 replicative DNA helic 92.0 0.34 7.3E-06 46.6 5.9 56 51-116 59-114 (237)
328 PRK06904 replicative DNA helic 92.0 1.5 3.3E-05 46.9 11.5 131 55-198 220-367 (472)
329 TIGR03881 KaiC_arch_4 KaiC dom 91.9 1.3 2.9E-05 42.4 10.2 51 55-115 19-69 (229)
330 PF13177 DNA_pol3_delta2: DNA 91.9 0.97 2.1E-05 40.8 8.6 28 168-199 101-128 (162)
331 PRK08769 DNA polymerase III su 91.9 3.1 6.7E-05 42.0 13.0 43 39-82 2-51 (319)
332 KOG1133 Helicase of the DEAD s 91.8 8.1 0.00018 42.2 16.2 102 300-415 611-720 (821)
333 TIGR02928 orc1/cdc6 family rep 91.7 2.1 4.5E-05 44.3 12.1 25 57-82 41-65 (365)
334 cd01121 Sms Sms (bacterial rad 91.7 1.4 3E-05 45.6 10.4 51 56-116 82-132 (372)
335 PRK14962 DNA polymerase III su 91.4 1.6 3.5E-05 46.7 10.9 19 58-76 38-56 (472)
336 TIGR03877 thermo_KaiC_1 KaiC d 91.2 0.37 7.9E-06 46.6 5.4 52 55-116 20-71 (237)
337 TIGR03878 thermo_KaiC_2 KaiC d 91.2 2.9 6.2E-05 41.0 11.8 38 55-101 35-72 (259)
338 PF06733 DEAD_2: DEAD_2; Inte 91.2 0.11 2.4E-06 47.5 1.7 43 141-184 116-160 (174)
339 KOG0991 Replication factor C, 91.1 0.76 1.6E-05 43.2 6.9 30 168-198 112-141 (333)
340 PRK09111 DNA polymerase III su 91.0 2.5 5.5E-05 46.5 12.2 21 58-78 48-68 (598)
341 KOG0741 AAA+-type ATPase [Post 91.0 0.65 1.4E-05 48.8 7.0 54 17-73 215-273 (744)
342 COG0470 HolB ATPase involved i 91.0 1.3 2.8E-05 44.9 9.6 22 59-80 27-48 (325)
343 PRK14963 DNA polymerase III su 91.0 1.2 2.5E-05 48.2 9.4 28 168-199 115-142 (504)
344 PRK08691 DNA polymerase III su 90.9 2.2 4.7E-05 47.4 11.4 21 58-78 40-60 (709)
345 PRK06964 DNA polymerase III su 90.9 3.3 7.2E-05 42.2 12.1 41 42-83 2-47 (342)
346 PRK13900 type IV secretion sys 90.9 0.29 6.3E-06 49.8 4.5 43 54-106 158-200 (332)
347 PF03237 Terminase_6: Terminas 90.8 2.6 5.5E-05 43.5 11.8 46 60-111 1-46 (384)
348 PRK10689 transcription-repair 90.8 1.3 2.8E-05 52.6 10.3 80 318-410 648-728 (1147)
349 COG1200 RecG RecG-like helicas 90.8 1.2 2.6E-05 48.5 9.2 96 300-411 295-391 (677)
350 PRK12724 flagellar biosynthesi 90.8 2.7 5.8E-05 43.8 11.4 23 58-80 225-247 (432)
351 KOG1131 RNA polymerase II tran 90.6 1.5 3.2E-05 46.0 9.2 76 37-117 12-91 (755)
352 PRK07764 DNA polymerase III su 90.6 1.3 2.8E-05 50.7 9.7 22 58-79 39-60 (824)
353 COG1198 PriA Primosomal protei 90.4 0.75 1.6E-05 51.3 7.5 95 296-409 224-318 (730)
354 KOG1513 Nuclear helicase MOP-3 90.4 0.3 6.5E-06 53.3 4.2 74 379-452 850-935 (1300)
355 COG1219 ClpX ATP-dependent pro 90.4 0.17 3.6E-06 49.7 2.1 18 56-73 97-114 (408)
356 PRK14960 DNA polymerase III su 90.3 0.75 1.6E-05 50.5 7.2 21 58-78 39-59 (702)
357 PRK12323 DNA polymerase III su 90.2 0.8 1.7E-05 50.2 7.3 20 58-77 40-59 (700)
358 TIGR01243 CDC48 AAA family ATP 90.2 2.5 5.4E-05 48.2 11.8 56 15-73 172-229 (733)
359 PRK14949 DNA polymerase III su 90.1 0.91 2E-05 51.6 7.8 19 59-77 41-59 (944)
360 KOG0741 AAA+-type ATPase [Post 90.1 3.4 7.4E-05 43.7 11.2 69 22-102 493-573 (744)
361 TIGR01425 SRP54_euk signal rec 90.1 2.5 5.5E-05 44.3 10.6 44 58-110 102-147 (429)
362 cd00984 DnaB_C DnaB helicase C 90.0 3.1 6.7E-05 40.1 10.8 47 54-108 11-60 (242)
363 PRK06067 flagellar accessory p 90.0 6 0.00013 38.0 12.7 51 55-115 24-74 (234)
364 PRK14961 DNA polymerase III su 90.0 1.4 3E-05 45.6 8.8 18 59-76 41-58 (363)
365 PRK14965 DNA polymerase III su 89.8 7.8 0.00017 42.8 14.7 18 58-75 40-57 (576)
366 COG0513 SrmB Superfamily II DN 89.7 1.6 3.4E-05 47.5 9.2 73 322-410 102-180 (513)
367 PRK14969 DNA polymerase III su 89.7 7.2 0.00016 42.5 14.2 20 58-77 40-59 (527)
368 TIGR02525 plasmid_TraJ plasmid 89.5 0.49 1.1E-05 48.8 4.9 27 55-82 148-174 (372)
369 cd01130 VirB11-like_ATPase Typ 89.4 0.87 1.9E-05 42.1 6.1 33 41-73 9-42 (186)
370 PRK14950 DNA polymerase III su 89.4 2.5 5.4E-05 46.7 10.6 20 58-77 40-59 (585)
371 PRK00440 rfc replication facto 89.3 4.6 0.0001 40.7 11.9 18 58-75 40-57 (319)
372 PRK14951 DNA polymerase III su 89.2 4.7 0.0001 44.5 12.4 19 59-77 41-59 (618)
373 PRK10436 hypothetical protein; 89.1 1.2 2.6E-05 47.4 7.5 38 43-81 203-242 (462)
374 PF00265 TK: Thymidine kinase; 89.1 0.97 2.1E-05 41.4 6.0 36 59-103 4-39 (176)
375 PRK12726 flagellar biosynthesi 89.0 3.6 7.8E-05 42.3 10.5 24 56-79 206-229 (407)
376 PRK05896 DNA polymerase III su 89.0 6.6 0.00014 43.1 13.1 20 58-77 40-59 (605)
377 PRK05703 flhF flagellar biosyn 89.0 2.3 5E-05 44.9 9.5 24 56-79 221-244 (424)
378 PRK06871 DNA polymerase III su 88.9 3 6.5E-05 42.2 9.9 40 42-82 3-49 (325)
379 TIGR01243 CDC48 AAA family ATP 88.9 2.4 5.3E-05 48.3 10.4 56 17-75 449-506 (733)
380 PF02534 T4SS-DNA_transf: Type 88.9 0.32 7E-06 52.3 3.2 49 57-116 45-93 (469)
381 COG1419 FlhF Flagellar GTP-bin 88.9 2.4 5.1E-05 43.7 9.1 26 56-81 203-228 (407)
382 COG2874 FlaH Predicted ATPases 88.9 5.4 0.00012 37.3 10.5 134 57-226 29-168 (235)
383 PF10593 Z1: Z1 domain; Inter 88.8 1.3 2.8E-05 42.7 7.0 88 360-453 110-203 (239)
384 TIGR02639 ClpA ATP-dependent C 88.8 5.4 0.00012 45.5 13.0 20 56-75 203-222 (731)
385 PRK13764 ATPase; Provisional 88.6 0.82 1.8E-05 50.0 6.0 27 55-82 256-282 (602)
386 PRK07940 DNA polymerase III su 88.5 5 0.00011 41.9 11.5 21 57-77 37-57 (394)
387 TIGR02524 dot_icm_DotB Dot/Icm 88.4 0.6 1.3E-05 48.0 4.6 27 55-82 133-159 (358)
388 PRK14948 DNA polymerase III su 88.3 6.4 0.00014 43.7 12.8 20 58-77 40-59 (620)
389 COG2804 PulE Type II secretory 88.3 0.76 1.6E-05 48.4 5.3 40 42-82 242-283 (500)
390 PRK10867 signal recognition pa 88.3 4.4 9.5E-05 42.7 10.9 22 58-79 102-123 (433)
391 TIGR00064 ftsY signal recognit 88.2 2.5 5.4E-05 41.7 8.7 23 57-79 73-95 (272)
392 cd00268 DEADc DEAD-box helicas 88.2 3.3 7.1E-05 38.6 9.3 76 318-410 68-149 (203)
393 TIGR00959 ffh signal recogniti 88.2 4.5 9.8E-05 42.6 11.0 22 58-79 101-122 (428)
394 PF00437 T2SE: Type II/IV secr 88.1 0.38 8.2E-06 47.5 2.9 43 54-105 125-167 (270)
395 TIGR00763 lon ATP-dependent pr 88.0 1.8 3.9E-05 49.6 8.7 43 151-197 400-442 (775)
396 cd01126 TraG_VirD4 The TraG/Tr 88.0 0.3 6.4E-06 51.1 2.2 47 58-115 1-47 (384)
397 KOG0060 Long-chain acyl-CoA tr 88.0 0.45 9.7E-06 50.6 3.3 32 167-198 586-617 (659)
398 cd01129 PulE-GspE PulE/GspE Th 88.0 1.1 2.4E-05 44.0 6.0 43 35-81 60-104 (264)
399 PRK14721 flhF flagellar biosyn 88.0 2.1 4.5E-05 44.9 8.3 91 56-156 191-282 (420)
400 PRK14959 DNA polymerase III su 87.9 1.4 3.1E-05 48.3 7.2 20 58-77 40-59 (624)
401 PRK13695 putative NTPase; Prov 87.8 2.7 5.9E-05 38.3 8.2 23 58-81 2-24 (174)
402 PF12846 AAA_10: AAA-like doma 87.8 0.86 1.9E-05 45.5 5.3 43 56-107 1-43 (304)
403 PRK03992 proteasome-activating 87.7 3.6 7.8E-05 43.0 10.0 19 56-74 165-183 (389)
404 cd01131 PilT Pilus retraction 87.5 0.83 1.8E-05 42.8 4.7 22 59-81 4-25 (198)
405 PF06745 KaiC: KaiC; InterPro 87.5 0.59 1.3E-05 44.8 3.7 53 55-116 18-70 (226)
406 KOG0738 AAA+-type ATPase [Post 87.5 3.1 6.7E-05 42.3 8.6 57 17-73 182-262 (491)
407 KOG0732 AAA+-type ATPase conta 87.4 1.2 2.6E-05 51.1 6.5 56 15-73 259-316 (1080)
408 PRK08699 DNA polymerase III su 87.3 5.3 0.00011 40.5 10.6 35 42-76 2-41 (325)
409 PRK14970 DNA polymerase III su 87.3 10 0.00022 39.2 13.1 52 16-81 12-63 (367)
410 PF14516 AAA_35: AAA-like doma 87.2 1.4 2.9E-05 45.0 6.3 39 44-83 18-57 (331)
411 PRK14955 DNA polymerase III su 87.2 4 8.7E-05 42.8 10.0 20 58-77 40-59 (397)
412 KOG0739 AAA+-type ATPase [Post 87.2 12 0.00026 36.8 12.0 54 51-117 156-214 (439)
413 TIGR02533 type_II_gspE general 87.2 1.4 3E-05 47.4 6.6 38 43-81 227-266 (486)
414 PRK10865 protein disaggregatio 87.1 4.6 9.9E-05 46.8 11.2 19 57-75 200-218 (857)
415 cd01394 radB RadB. The archaea 87.1 3.8 8.3E-05 38.8 9.1 36 56-100 19-54 (218)
416 PRK04328 hypothetical protein; 87.1 1.1 2.3E-05 43.7 5.3 52 55-116 22-73 (249)
417 PRK13897 type IV secretion sys 87.0 0.42 9.1E-06 52.5 2.6 49 57-116 159-207 (606)
418 TIGR03600 phage_DnaB phage rep 87.0 2.3 5.1E-05 45.0 8.3 39 54-100 192-230 (421)
419 TIGR02012 tigrfam_recA protein 86.9 1.3 2.8E-05 44.6 5.9 43 56-107 55-97 (321)
420 PF01443 Viral_helicase1: Vira 86.8 0.38 8.2E-06 46.2 2.0 13 59-71 1-13 (234)
421 TIGR03346 chaperone_ClpB ATP-d 86.8 6.9 0.00015 45.4 12.5 19 57-75 195-213 (852)
422 PRK00080 ruvB Holliday junctio 86.8 1.7 3.7E-05 44.2 6.9 19 57-75 52-70 (328)
423 TIGR00678 holB DNA polymerase 86.5 3.3 7.3E-05 38.2 8.1 28 168-199 95-122 (188)
424 PF10412 TrwB_AAD_bind: Type I 86.4 0.84 1.8E-05 47.6 4.4 52 51-111 10-61 (386)
425 COG2909 MalT ATP-dependent tra 86.4 3.2 7E-05 46.4 8.9 43 170-227 130-172 (894)
426 PRK14952 DNA polymerase III su 86.2 14 0.00029 40.8 13.6 19 59-77 38-56 (584)
427 cd01127 TrwB Bacterial conjuga 86.1 0.69 1.5E-05 48.7 3.6 49 50-107 36-84 (410)
428 PRK11776 ATP-dependent RNA hel 86.1 3 6.5E-05 44.7 8.6 76 319-410 72-153 (460)
429 PRK14953 DNA polymerase III su 86.1 11 0.00025 40.5 12.8 19 59-77 41-59 (486)
430 PRK14954 DNA polymerase III su 86.0 9.8 0.00021 42.2 12.5 28 168-199 126-153 (620)
431 COG4098 comFA Superfamily II D 86.0 3.2 7E-05 41.4 7.7 95 91-198 303-399 (441)
432 PRK09354 recA recombinase A; P 86.0 2.8 6E-05 42.7 7.7 43 56-107 60-102 (349)
433 PRK06090 DNA polymerase III su 85.9 10 0.00023 38.2 11.7 41 41-82 3-50 (319)
434 TIGR02788 VirB11 P-type DNA tr 85.8 1.2 2.7E-05 44.9 5.1 19 54-72 142-160 (308)
435 PRK14957 DNA polymerase III su 85.7 6.6 0.00014 42.7 10.9 19 59-77 41-59 (546)
436 TIGR02640 gas_vesic_GvpN gas v 85.6 0.76 1.6E-05 45.2 3.5 28 48-75 13-40 (262)
437 KOG0331 ATP-dependent RNA heli 85.5 6.5 0.00014 42.0 10.3 108 319-448 165-288 (519)
438 COG1074 RecB ATP-dependent exo 85.5 1.5 3.3E-05 52.4 6.4 61 55-119 15-75 (1139)
439 TIGR03819 heli_sec_ATPase heli 85.5 1.4 3.1E-05 44.9 5.5 63 30-105 154-217 (340)
440 PRK07471 DNA polymerase III su 85.3 8.4 0.00018 39.8 11.0 25 58-83 43-67 (365)
441 TIGR01420 pilT_fam pilus retra 85.3 1.3 2.9E-05 45.3 5.2 43 55-105 121-163 (343)
442 PRK08840 replicative DNA helic 85.3 6.2 0.00013 42.2 10.3 133 53-198 214-362 (464)
443 PRK06321 replicative DNA helic 85.3 8.2 0.00018 41.4 11.2 128 56-198 226-372 (472)
444 PRK11192 ATP-dependent RNA hel 85.3 4.6 0.0001 42.9 9.5 75 319-410 73-153 (434)
445 PRK09376 rho transcription ter 85.2 4.2 9E-05 42.0 8.5 40 42-82 152-194 (416)
446 PRK09112 DNA polymerase III su 85.2 12 0.00026 38.4 12.0 25 58-83 47-71 (351)
447 PF03796 DnaB_C: DnaB-like hel 85.0 3.7 8E-05 40.2 8.0 131 55-198 18-163 (259)
448 TIGR03345 VI_ClpV1 type VI sec 84.9 12 0.00025 43.5 13.0 30 46-75 192-227 (852)
449 TIGR03345 VI_ClpV1 type VI sec 84.9 4 8.8E-05 47.2 9.3 17 59-75 599-615 (852)
450 TIGR02858 spore_III_AA stage I 84.9 5.5 0.00012 39.2 9.0 25 48-72 100-127 (270)
451 COG0630 VirB11 Type IV secreto 84.8 2 4.4E-05 43.2 6.1 55 41-105 127-182 (312)
452 PRK07993 DNA polymerase III su 84.8 2.3 5E-05 43.3 6.6 40 42-82 3-49 (334)
453 PF03969 AFG1_ATPase: AFG1-lik 84.7 5.9 0.00013 40.8 9.5 44 169-227 127-170 (362)
454 PRK07133 DNA polymerase III su 84.7 7.7 0.00017 43.5 10.9 20 58-77 42-61 (725)
455 KOG2028 ATPase related to the 84.6 4.3 9.3E-05 40.9 7.9 49 58-115 164-212 (554)
456 COG0467 RAD55 RecA-superfamily 84.3 1.9 4.2E-05 42.2 5.7 52 55-116 22-73 (260)
457 PRK10416 signal recognition pa 84.2 6.3 0.00014 39.9 9.3 21 57-77 115-135 (318)
458 PRK11634 ATP-dependent RNA hel 84.1 4.7 0.0001 45.0 9.1 75 319-409 74-154 (629)
459 PRK05748 replicative DNA helic 84.1 11 0.00024 40.2 11.8 129 55-197 202-347 (448)
460 TIGR01054 rgy reverse gyrase. 84.1 3.6 7.7E-05 49.2 8.6 67 319-395 121-187 (1171)
461 PRK09183 transposase/IS protei 84.1 1.9 4.1E-05 42.3 5.4 25 53-77 99-123 (259)
462 TIGR00665 DnaB replicative DNA 84.0 7.2 0.00016 41.5 10.3 129 55-198 194-338 (434)
463 KOG2036 Predicted P-loop ATPas 83.8 76 0.0016 35.2 18.6 85 21-113 224-324 (1011)
464 CHL00176 ftsH cell division pr 83.7 7.4 0.00016 43.4 10.4 19 56-74 216-234 (638)
465 PRK13850 type IV secretion sys 83.6 1 2.2E-05 50.1 3.7 48 57-115 140-187 (670)
466 CHL00095 clpC Clp protease ATP 83.6 5.1 0.00011 46.4 9.4 21 57-77 201-221 (821)
467 TIGR00602 rad24 checkpoint pro 83.5 11 0.00024 41.9 11.4 19 57-75 111-129 (637)
468 TIGR02784 addA_alphas double-s 83.2 2.9 6.3E-05 50.3 7.6 58 56-119 10-67 (1141)
469 KOG0740 AAA+-type ATPase [Post 83.2 10 0.00023 39.5 10.4 21 57-77 187-207 (428)
470 PRK09087 hypothetical protein; 83.2 3.5 7.7E-05 39.4 6.8 26 172-199 90-115 (226)
471 COG2255 RuvB Holliday junction 83.1 4.1 9E-05 39.7 7.0 18 58-75 54-71 (332)
472 COG0210 UvrD Superfamily I DNA 83.0 3.1 6.6E-05 46.9 7.3 71 41-118 2-72 (655)
473 KOG0344 ATP-dependent RNA heli 82.9 5 0.00011 42.9 8.1 102 60-179 361-466 (593)
474 PF04665 Pox_A32: Poxvirus A32 82.9 1.7 3.8E-05 41.7 4.5 35 58-101 15-49 (241)
475 TIGR02397 dnaX_nterm DNA polym 82.9 11 0.00024 38.7 10.9 27 168-198 116-142 (355)
476 PRK14701 reverse gyrase; Provi 82.8 5.2 0.00011 49.3 9.4 67 318-395 121-187 (1638)
477 TIGR02538 type_IV_pilB type IV 82.8 1.8 3.8E-05 47.7 5.1 43 35-81 296-340 (564)
478 KOG0058 Peptide exporter, ABC 82.8 3.5 7.5E-05 45.4 7.1 137 55-199 493-652 (716)
479 PF02572 CobA_CobO_BtuR: ATP:c 82.7 13 0.00027 33.8 9.7 53 168-235 95-149 (172)
480 KOG0745 Putative ATP-dependent 82.5 0.79 1.7E-05 47.0 2.0 19 55-73 225-243 (564)
481 PRK04537 ATP-dependent RNA hel 82.3 6 0.00013 43.7 9.0 74 320-410 85-165 (572)
482 KOG0347 RNA helicase [RNA proc 82.3 2.6 5.7E-05 44.6 5.7 57 321-394 265-321 (731)
483 KOG1513 Nuclear helicase MOP-3 82.3 2 4.3E-05 47.3 5.0 158 41-225 264-454 (1300)
484 TIGR03743 SXT_TraD conjugative 82.1 2.9 6.3E-05 46.5 6.4 52 57-117 177-230 (634)
485 COG1132 MdlB ABC-type multidru 82.0 3.6 7.7E-05 45.5 7.2 32 168-199 482-513 (567)
486 PF12775 AAA_7: P-loop contain 82.0 0.96 2.1E-05 44.6 2.4 20 53-72 30-49 (272)
487 CHL00095 clpC Clp protease ATP 81.9 5.4 0.00012 46.2 8.8 32 44-75 512-558 (821)
488 TIGR03880 KaiC_arch_3 KaiC dom 81.9 2.9 6.3E-05 39.9 5.7 52 55-116 15-66 (224)
489 PRK08006 replicative DNA helic 81.8 11 0.00025 40.3 10.6 131 55-198 223-369 (471)
490 cd00267 ABC_ATPase ABC (ATP-bi 81.7 2.3 5.1E-05 37.9 4.7 31 169-199 98-128 (157)
491 PRK06305 DNA polymerase III su 81.7 10 0.00022 40.4 10.2 20 58-77 41-60 (451)
492 PRK07004 replicative DNA helic 81.5 4.4 9.6E-05 43.3 7.4 130 55-198 212-357 (460)
493 TIGR00416 sms DNA repair prote 81.5 12 0.00027 39.8 10.7 51 56-116 94-144 (454)
494 PRK13876 conjugal transfer cou 81.4 1.2 2.5E-05 49.6 3.1 48 57-115 145-192 (663)
495 KOG0744 AAA+-type ATPase [Post 81.4 9 0.0002 38.1 8.6 114 56-185 177-325 (423)
496 COG1197 Mfd Transcription-repa 81.3 5.1 0.00011 46.6 8.0 80 318-410 642-722 (1139)
497 PRK00771 signal recognition pa 81.3 4.4 9.5E-05 42.8 7.1 21 58-78 97-117 (437)
498 COG5008 PilU Tfp pilus assembl 81.3 1.3 2.9E-05 42.4 3.0 17 58-74 129-145 (375)
499 PRK08451 DNA polymerase III su 81.1 17 0.00036 39.6 11.5 18 59-76 39-56 (535)
500 KOG2543 Origin recognition com 80.9 31 0.00068 35.3 12.4 31 42-72 10-46 (438)
No 1
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-113 Score=844.91 Aligned_cols=553 Identities=48% Similarity=0.778 Sum_probs=482.3
Q ss_pred cccccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCC
Q 007774 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI 88 (590)
Q Consensus 9 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~ 88 (590)
+..+..|++..|.+|||++.++..|.+.|++..||.+|+++||.+++|+|++|.|+||||||++|++|+++.|+...+++
T Consensus 127 ~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki 206 (708)
T KOG0348|consen 127 QVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI 206 (708)
T ss_pred cccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCC
Q 007774 89 DRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 89 ~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
.|.+|+.+|||+||||||.|+|+.++++.+++.|+++++++||+..+++++++++|++|+|+|||||.|||.++..+.++
T Consensus 207 ~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 207 QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCC
Q 007774 169 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~ 248 (590)
.++||||||||+|+++||+.++..|++.+.......+.. ...+.+.|.+|+|||+++.|..|+.+.|.+|++|..+..
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~--~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s 364 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKD--PKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKS 364 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhhccchhccc--ccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccch
Confidence 999999999999999999999999999996533222211 112236899999999999999999999999999996554
Q ss_pred CCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecc
Q 007774 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t 328 (590)
....... ...+ .+.... ...+..+.+.+|+++.|.|.++|++.++.+|..+|...+......++|||+++
T Consensus 365 ~~~~~p~-------~~a~-~ev~~~--~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~ 434 (708)
T KOG0348|consen 365 HSQLNPK-------DKAV-QEVDDG--PAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSC 434 (708)
T ss_pred hhhcCcc-------hhhh-hhcCCc--ccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEec
Confidence 3211100 0000 000000 11222356889999999999999999999999999999887778899999999
Q ss_pred hhhHHHHHHhhhhccCC----CCCC-ChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCC
Q 007774 329 CDAVDFHYSLLSEFQWS----PHSQ-PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP 403 (590)
Q Consensus 329 ~~~~~~~~~~l~~~~~~----~~~~-~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip 403 (590)
++.|+|+|.+|....+. ..+. .++....++.+..++.|||+|+|.+|..+++.|......||+||||++||||+|
T Consensus 435 ~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP 514 (708)
T KOG0348|consen 435 SDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLP 514 (708)
T ss_pred hhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCC
Confidence 99999999999887665 2222 223345577888999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHcCCCCccccchhhcccCCcCCCCccccccc
Q 007774 404 KVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFL 483 (590)
Q Consensus 404 ~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (590)
+|+||||||+|.++.+|+||+|||+|+|..|.+++|+.|.|.+|++.++.+.+.+.++++..++..+.-..+ +..
T Consensus 515 ~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~~l~~~~~~~~-----k~~ 589 (708)
T KOG0348|consen 515 HVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPAFKPRKD-----KAK 589 (708)
T ss_pred CcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhhhhhhcCcccc-----ccc
Confidence 999999999999999999999999999999999999999999999999999999999999888877653222 234
Q ss_pred cccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhcCCCCCC-ccccccch
Q 007774 484 TTESHPWILSLQNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSFALKEQP-SLVGKSFQ 562 (590)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f~l~~~p-~~~~~~~~ 562 (590)
..++++++..+|..++.++..|+.+..+|.+||+||+|+|++|+.++++||+++.||+||+|+||||++.| +..++...
T Consensus 590 ~~e~~~~at~~q~~~e~~~~~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AKSFaLReaP~k~~g~~~~ 669 (708)
T KOG0348|consen 590 TKEWQERATTLQLNLERLVVGDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAKSFALREAPGKLSGKQSS 669 (708)
T ss_pred chhhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHHhhHhhhcchhhhccccC
Confidence 44788999999999999999999999999999999999999999999999999999999999999999999 56666666
Q ss_pred hhhHhhhhhhhhcccc
Q 007774 563 KQSKKRKRDQRQKGQS 578 (590)
Q Consensus 563 ~~~~~~~~~~~~~~~~ 578 (590)
+...+.++.+|+++.+
T Consensus 670 k~~~~~~~~er~kk~q 685 (708)
T KOG0348|consen 670 KDGAQGKRSEKKKKEQ 685 (708)
T ss_pred cccccccccchhhhhh
Confidence 6655555555554333
No 2
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-95 Score=711.07 Aligned_cols=445 Identities=35% Similarity=0.593 Sum_probs=400.9
Q ss_pred cCCccCCC--CCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 17 SCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 17 ~~~f~~l~--l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
...|++++ |+++++.++ +.+||..|||+|..+||.++.++||++.|+||||||+||++|+++.+.+...+... ...
T Consensus 3 ~~~~~~l~~~L~~~l~~~l-~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~-~~v 80 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEAL-DESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPP-GQV 80 (567)
T ss_pred CcchhhcCCCccHHHHHHH-HhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCc-cce
Confidence 45788885 669999999 67899999999999999999999999999999999999999999999765443322 246
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHh-cCCCcEEEECChHHHHHHhc-cCCCCCCceeE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL-RKGISILVATPGRLLDHLKH-TSSFLHTNLRW 172 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~l~~-~~~~~~~~l~~ 172 (590)
.+|||+||||||.||.+++..+..++..+...+++||.+...+...+ +++++|+|||||||.+.+++ ...+.+.++++
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 89999999999999999999999988888999999998887776655 46799999999999999988 44456779999
Q ss_pred EEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCC
Q 007774 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (590)
Q Consensus 173 lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~ 252 (590)
||+||||+++||||+..+..|++.||+ ++++.|||||.++.+..+...+++||+.+.+....
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LPK---------------QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~--- 222 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLPK---------------QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKS--- 222 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhccc---------------ccccccccchhhHHHHHHHHhhccCceeeeecccc---
Confidence 999999999999999999999999998 89999999999999999999999999999987764
Q ss_pred CcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhH
Q 007774 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~ 332 (590)
...+|..+..+|+.|++..|+..|+++|... ...|+|||++||.+|
T Consensus 223 ------------------------------~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~----~~kK~iVFF~TCasV 268 (567)
T KOG0345|consen 223 ------------------------------KSATPSSLALEYLVCEADEKLSQLVHLLNNN----KDKKCIVFFPTCASV 268 (567)
T ss_pred ------------------------------cccCchhhcceeeEecHHHHHHHHHHHHhcc----ccccEEEEecCcchH
Confidence 1237899999999999999999999999873 468999999999999
Q ss_pred HHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEec
Q 007774 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (590)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d 412 (590)
+|++.+|..+ ++..+++.+||+|+++.|..+++.|++....+|+||||++||||||+|+||||||
T Consensus 269 eYf~~~~~~~---------------l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~D 333 (567)
T KOG0345|consen 269 EYFGKLFSRL---------------LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFD 333 (567)
T ss_pred HHHHHHHHHH---------------hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecC
Confidence 9999999886 3478899999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHcC-CCCccccchhhcccCCcCCCCccccccccccchhhH
Q 007774 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHG-VSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPWI 491 (590)
Q Consensus 413 ~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (590)
+|.+++.|+||+|||||+|+.|.+++|+.|.|..|+.+|+-++ +.++++..+.. .
T Consensus 334 pP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~------------------------~ 389 (567)
T KOG0345|consen 334 PPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKA------------------------S 389 (567)
T ss_pred CCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhccccc------------------------c
Confidence 9999999999999999999999999999999999999999885 55554433211 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhcCCCCCCcc
Q 007774 492 LSLQNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSFALKEQPSL 556 (590)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f~l~~~p~~ 556 (590)
..+-..+.+++..|+++++.+.+||+||+|+|++|. +.+||++++||+|.+|.+|||.+.|+|
T Consensus 390 ~~~~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H~--cs~Ifr~kdLd~~~lA~~YgLl~lP~M 452 (567)
T KOG0345|consen 390 LSVYQDIRSIISKDRAVLDKGLKAFVSHVRAYKKHH--CSYIFRLKDLDLGKLATLYGLLRLPKM 452 (567)
T ss_pred hhHHHHHHHHhcccHHHHhhhHHHHHHHHHHHhhcc--eeEEEeecCCcHHHHHHHHHHHhCCCc
Confidence 125667889999999999999999999999999998 679999999999999999999999986
No 3
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.7e-94 Score=707.10 Aligned_cols=458 Identities=41% Similarity=0.649 Sum_probs=424.0
Q ss_pred cccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCC
Q 007774 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (590)
Q Consensus 13 ~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~ 92 (590)
++.+...|+++.|++.+++++ ..|||+.||++|+.+||.++.|+|+++.|.||||||+||++|+++.+.+...+. ..
T Consensus 77 s~~~~~~f~~~~LS~~t~kAi-~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~--r~ 153 (543)
T KOG0342|consen 77 SITTTFRFEEGSLSPLTLKAI-KEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP--RN 153 (543)
T ss_pred chhhhhHhhccccCHHHHHHH-HhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC--CC
Confidence 356677899999999999999 579999999999999999999999999999999999999999999998765443 47
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeE
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~ 172 (590)
+..+||||||||||.|++.++++++.+...+.++++.||.+...+.+++.++++|+|+|||||+||++++..+.+.++++
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 89999999999999999999999999776889999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcC-CCEEEecCCCCCC
Q 007774 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-TPVLIGLDEKKLP 251 (590)
Q Consensus 173 lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~-~p~~i~~~~~~~~ 251 (590)
+|+|||||++|+||+++++.|+..+|+ .+|+++||||.++.|+.++...+. +|+++.+....
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk---------------~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~-- 296 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPK---------------QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGG-- 296 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccc---------------cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCC--
Confidence 999999999999999999999999996 899999999999999999999886 59999887764
Q ss_pred CCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhh
Q 007774 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~ 331 (590)
...+.+.+.|.|++++...++..+..+|++.. ...++||||+||..
T Consensus 297 -------------------------------~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~---~~~KiiVF~sT~~~ 342 (543)
T KOG0342|consen 297 -------------------------------ERETHERLEQGYVVAPSDSRFSLLYTFLKKNI---KRYKIIVFFSTCMS 342 (543)
T ss_pred -------------------------------CcchhhcccceEEeccccchHHHHHHHHHHhc---CCceEEEEechhhH
Confidence 23466789999999999999999999999865 23899999999999
Q ss_pred HHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEe
Q 007774 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (590)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~ 411 (590)
+.+++++|... +++|..+||+++|..|..++.+|++.+..||+||||++||+|+|+|+|||||
T Consensus 343 vk~~~~lL~~~-----------------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~ 405 (543)
T KOG0342|consen 343 VKFHAELLNYI-----------------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQY 405 (543)
T ss_pred HHHHHHHHhhc-----------------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEe
Confidence 99999999977 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHcCCCCccccchhhcccCCcCCCCccccccccccchhhH
Q 007774 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPWI 491 (590)
Q Consensus 412 d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (590)
|+|.++++||||+|||||.|..|.+++|+.|.|..|++.|+ .++++++++++. ..
T Consensus 406 ~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK--~lpl~~~e~~~~-----------------------~~ 460 (543)
T KOG0342|consen 406 DPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK--KLPLEEFEFPPL-----------------------KP 460 (543)
T ss_pred CCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh--hCCCcccCCCCC-----------------------CH
Confidence 99999999999999999999999999999999999999999 578787776543 24
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhcCCCCCCccccccchhhhHhh
Q 007774 492 LSLQNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSFALKEQPSLVGKSFQKQSKKR 568 (590)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f~l~~~p~~~~~~~~~~~~~~ 568 (590)
.+++..+++++..+..+.+.|..||.||+++|++|+ ++.+|++..|+|..+|+|||+..||.+.-...++++.+.
T Consensus 461 ~~v~~~~~~li~~~y~~~~aak~ay~syl~~y~s~s--lk~~~~~~~l~La~~~~s~gf~~pp~v~~~i~~~~~~k~ 535 (543)
T KOG0342|consen 461 EDVQSQLEKLISKNYSLKEAAKEAYKSYLGAYNSHS--LKDIFNVNLLELAAVAKSFGFSVPPAVDLKIDGKMGLKG 535 (543)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccchh--hhcccccchhhHHHHHHHcCCCCCccceeeccccccccC
Confidence 578999999999999999999999999999999997 999999999999999999999999999888777776643
No 4
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-92 Score=697.60 Aligned_cols=445 Identities=38% Similarity=0.629 Sum_probs=415.3
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~ 95 (590)
+...|++|+|+.++.+.|.+. +|..||.+|+.+||..|.|+|+|..|.|||||||||++|+++.|.+ .+|+..+|..
T Consensus 67 ~~~kF~dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r--~kWs~~DGlG 143 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYR--LKWSPTDGLG 143 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHH--cCCCCCCCce
Confidence 345899999999999999765 9999999999999999999999999999999999999999999965 6788899999
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
+|||+||||||.|+++++.+.++ ++....|++.||.+.+.+..++ .+++|+|||||||++||..+..+..+++.+||+
T Consensus 144 alIISPTRELA~QtFevL~kvgk-~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGK-HHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhh-ccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 99999999999999999999998 5678899999999988888777 468999999999999999999999999999999
Q ss_pred echhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcc
Q 007774 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (590)
Q Consensus 176 DEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~ 255 (590)
|||||++||||...+..|++++|. .+|++|||||.+..+..++++++.+|.++.+....
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP~---------------~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a------ 280 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA------ 280 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCCh---------------hheeeeeecccchhHHHHHHhhcCCCcEEEEeccc------
Confidence 999999999999999999999997 89999999999999999999999999999987543
Q ss_pred cccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHH
Q 007774 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (590)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~ 335 (590)
...+|.++.|+|++++...|+..|+.+|+.++ ..++|||++||.+|.|+
T Consensus 281 ---------------------------~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl----k~K~iVF~SscKqvkf~ 329 (758)
T KOG0343|consen 281 ---------------------------VAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL----KKKSIVFLSSCKQVKFL 329 (758)
T ss_pred ---------------------------cccChhhhhheEEEEehhhHHHHHHHHHHhcc----ccceEEEEehhhHHHHH
Confidence 25689999999999999999999999999865 68999999999999999
Q ss_pred HHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCC
Q 007774 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (590)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~ 415 (590)
|+.|+++ -||++++.|||.|+|..|..++.+|.+....||||||+++||||||.|+||||+|+|.
T Consensus 330 ~e~F~rl---------------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe 394 (758)
T KOG0343|consen 330 YEAFCRL---------------RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE 394 (758)
T ss_pred HHHHHhc---------------CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch
Confidence 9999987 4799999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhccccCCCCCccEEEEeCccc-hHHHHHHHHcCCCCccccchhhcccCCcCCCCccccccccccchhhHHHH
Q 007774 416 EATEYVHRVGRTARLGERGDSLLFLQPVE-MDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPWILSL 494 (590)
Q Consensus 416 s~~~yiqr~GRt~R~g~~g~~i~~l~~~e-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (590)
++++||||+|||+|.+..|.++++++|+| ..++..|++++|++.++.+.. .....+
T Consensus 395 dv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~-----------------------~k~~~i 451 (758)
T KOG0343|consen 395 DVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDP-----------------------EKLTSI 451 (758)
T ss_pred hHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhhccCH-----------------------HHhhhH
Confidence 99999999999999999999999999988 788999999999988876532 134568
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhcCCCCCCccc
Q 007774 495 QNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSFALKEQPSLV 557 (590)
Q Consensus 495 ~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f~l~~~p~~~ 557 (590)
+.+++.++.+++++...|++||+||+|+..... .+.+|++..|++..+|.||||...|+.+
T Consensus 452 ~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~r--dK~~f~~~~l~~~afa~s~Gl~~~p~~~ 512 (758)
T KOG0343|consen 452 RNKLEALLAKDPELKEYAQKAFISYLRSIYLMR--DKRVFDVEKLDIEAFADSLGLPGTPRIV 512 (758)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhc--cchhhcchhccHHHHHHhcCCCCCchhc
Confidence 999999999999999999999999999987654 6889999999999999999999999963
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-79 Score=585.00 Aligned_cols=368 Identities=38% Similarity=0.641 Sum_probs=343.3
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|.+|++++.+++++. ..||..||+||+++||.++.|+|+|..|+||||||.+|++|+++.|.... ...++
T Consensus 60 ~~sf~dLgv~~~L~~ac~-~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p------~~~~~ 132 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQ-ELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP------KLFFA 132 (476)
T ss_pred hcchhhcCcCHHHHHHHH-HhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC------CCceE
Confidence 458999999999999995 57999999999999999999999999999999999999999999998733 34889
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
+||+||||||.|+.+.++.+.... .+.+.+++||.+...+...+.+.|+|+|+|||||.+|+.+++.|.+..+++||+|
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 999999999999999999998854 4778899999999988888999999999999999999999999999999999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||+++|+.|...+..|+..+|. .+|+++||||++..+..+....+.+|+.+.+...
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~---------------erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k-------- 268 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPR---------------ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK-------- 268 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCc---------------cceEEEEEeecchhhHHHHhhccCCCeEEeccch--------
Confidence 99999999999999999999996 8999999999999999999999999999988665
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
+.+...+.|+|+.++...|-..|+.+|+... +..+||||+||..+++++
T Consensus 269 ---------------------------y~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~----g~s~iVF~~t~~tt~~la 317 (476)
T KOG0330|consen 269 ---------------------------YQTVDHLKQTYLFVPGKDKDTYLVYLLNELA----GNSVIVFCNTCNTTRFLA 317 (476)
T ss_pred ---------------------------hcchHHhhhheEeccccccchhHHHHHHhhc----CCcEEEEEeccchHHHHH
Confidence 5678899999999999999999999999754 689999999999999999
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s 416 (590)
-+|..+ |+.+..|||.|++..|...++.|++|..+||+||||++||+|+|.|++|||||.|.+
T Consensus 318 ~~L~~l-----------------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~ 380 (476)
T KOG0330|consen 318 LLLRNL-----------------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTH 380 (476)
T ss_pred HHHHhc-----------------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCc
Confidence 999988 888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
..+||||+|||||+|++|.++.|++..|.+.++.++.. +-.+.+++.
T Consensus 381 skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~ 428 (476)
T KOG0330|consen 381 SKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKV 428 (476)
T ss_pred HHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCc
Confidence 99999999999999999999999999999999998875 444445443
No 6
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-75 Score=573.98 Aligned_cols=361 Identities=38% Similarity=0.601 Sum_probs=334.9
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|.+++|+.++++++ ..+||..|||||..+||..+.|+|++.+|.||||||.||++|++++|+-.+.+ ....++|
T Consensus 181 ~sF~~mNLSRPlLka~-~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVL 256 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKAC-STLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVL 256 (691)
T ss_pred hhHHhcccchHHHHHH-HhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEE
Confidence 4899999999999999 67999999999999999999999999999999999999999999999865443 3568899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
||+||||||.|++.+.+++.. |..+.+++.+||-+.+.+-+.++++|+|+|+|||||+|||.+..+|+++++.+||+||
T Consensus 257 VL~PTRELaiQv~sV~~qlaq-Ft~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQ-FTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHh-hccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 999999999999999999998 5669999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
|||||+.||..++..|+..+|+ .+|++|||||+++.++.|+.++|.+|+.+.+++..
T Consensus 336 ADRMLeegFademnEii~lcpk---------------~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~-------- 392 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCPK---------------NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK-------- 392 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---------------cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc--------
Confidence 9999999999999999999997 79999999999999999999999999999998763
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecC---CChHHHHHHHHHhhhcccCCceEEEEecchhhHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC---GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
..+..|.|.|+.+.+ ..+-..|..++...+ ..++|||+.|.+.+..
T Consensus 393 ---------------------------~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf----~~~~ivFv~tKk~AHR 441 (691)
T KOG0338|consen 393 ---------------------------DTAPKLTQEFIRIRPKREGDREAMLASLITRTF----QDRTIVFVRTKKQAHR 441 (691)
T ss_pred ---------------------------ccchhhhHHHheeccccccccHHHHHHHHHHhc----ccceEEEEehHHHHHH
Confidence 456778888887664 356677777777765 5799999999999999
Q ss_pred HHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC
Q 007774 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (590)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p 414 (590)
+.-+|.-+ |+.+..+||+++|.+|...++.|++++++||||||+++|||||++|.+||||++|
T Consensus 442 l~IllGLl-----------------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 442 LRILLGLL-----------------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred HHHHHHHh-----------------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCc
Confidence 98888655 8889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 415 ~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
.+.+.|+||+|||+|+|+.|.++.|+...|...++.+-+.
T Consensus 505 ~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred hhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999887654
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-74 Score=586.17 Aligned_cols=367 Identities=35% Similarity=0.576 Sum_probs=334.8
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
..|++++|++.+...++. .||+.|||||.++||.++.|+|++..|.|||||||+|++|++.++........+.+++.+|
T Consensus 91 ~~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred hhhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 379999999999999965 5999999999999999999999999999999999999999999998755556677899999
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
||+||||||.|+.+++.++...+. +...+++||.....+...++.+++|+|+|||||++++.. ....++.+.++|+||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDE 247 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEecc
Confidence 999999999999999999988654 668899999999999999999999999999999999987 677889999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||+|+||||+.+++.|+..++.. .+|++++|||.|..++.++.-++.+|..+.+....
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~~--------------~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~-------- 305 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPRP--------------DRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKK-------- 305 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCCC--------------cccEEEEeeeccHHHHHHHHHHhcCceEEEecchh--------
Confidence 99999999999999999999653 56999999999999999999999999988886542
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
+.....++.|....|+...|...|..+|.... .....|+||||+|...|+.+..
T Consensus 306 -------------------------~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~ 359 (519)
T KOG0331|consen 306 -------------------------ELKANHNIRQIVEVCDETAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELAR 359 (519)
T ss_pred -------------------------hhhhhcchhhhhhhcCHHHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHH
Confidence 12345667788888888899999999998876 4567899999999999999999
Q ss_pred hhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCCh
Q 007774 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (590)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~ 417 (590)
.+... ++++..+||+.+|.+|..+++.|++|+..||||||||+||||+|+|++|||||+|.++
T Consensus 360 ~l~~~-----------------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~v 422 (519)
T KOG0331|consen 360 NLRRK-----------------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNV 422 (519)
T ss_pred HHHhc-----------------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCH
Confidence 99886 6788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccccCCCCCccEEEEeCccchHHHHHHH
Q 007774 418 TEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 418 ~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~ 452 (590)
++|+||+|||||+|+.|.+++|+++.+......+.
T Consensus 423 EdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 423 EDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred HHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHH
Confidence 99999999999999999999999998866554443
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-71 Score=591.51 Aligned_cols=362 Identities=39% Similarity=0.599 Sum_probs=330.6
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
..|++|+|++.++++|. .+||..|||||..+||.++.|+|++++|+||||||++|++|+++.+..... .....+|
T Consensus 29 ~~F~~l~l~~~ll~~l~-~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~----~~~~~aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALK-DLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE----RKYVSAL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc----cCCCceE
Confidence 57999999999999996 489999999999999999999999999999999999999999999764211 1111199
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
|++||||||.|+++++..+......+.+.+++||.+...+...++.+++|||||||||+||+... .+.++.++++|+||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDE 182 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDE 182 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEecc
Confidence 99999999999999999999865457789999999999999999989999999999999999985 78899999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||+|+|+||.+++..|+..+|. .+|+++||||+++.+..+++..+.+|..+.+....
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~---------------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~-------- 239 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPP---------------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK-------- 239 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCc---------------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc--------
Confidence 9999999999999999999986 79999999999999999999999999988876432
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecCCC-hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
....+..+.|+++.++... |+..|..++... ...++||||+|+..|+.++
T Consensus 240 -------------------------~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~----~~~~~IVF~~tk~~~~~l~ 290 (513)
T COG0513 240 -------------------------LERTLKKIKQFYLEVESEEEKLELLLKLLKDE----DEGRVIVFVRTKRLVEELA 290 (513)
T ss_pred -------------------------ccccccCceEEEEEeCCHHHHHHHHHHHHhcC----CCCeEEEEeCcHHHHHHHH
Confidence 1236788999999999876 999999998874 3457999999999999999
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s 416 (590)
..|... |+.+..+||+|+|.+|.++++.|++|+.+||||||+++||||+|+|++|||||+|.+
T Consensus 291 ~~l~~~-----------------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~ 353 (513)
T COG0513 291 ESLRKR-----------------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLD 353 (513)
T ss_pred HHHHHC-----------------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCC
Confidence 999887 789999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCccEEEEeCcc-chHHHHHHHHc
Q 007774 417 ATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDLEKH 454 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~~g~~i~~l~~~-e~~~~~~l~~~ 454 (590)
++.|+||+|||||+|+.|.++.|+.+. |..++..+++.
T Consensus 354 ~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 354 PEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred HHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 999999999999999999999999986 89999888876
No 9
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-71 Score=537.82 Aligned_cols=451 Identities=30% Similarity=0.466 Sum_probs=372.7
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|++|+|++++++++. ++||++||.+|+.+||.+++|+|++..|.||||||+||++|+++.|...........|+.++
T Consensus 19 ktFe~~gLD~RllkAi~-~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAIT-KLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHH-HhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 69999999999999995 67999999999999999999999999999999999999999999998876555567899999
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCC-cceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHW-IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
||+||||||.|++.++.++...+.. +...-+....+.......+...|+|+|+||++++.++.......++.+++||+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 9999999999999999999886652 223333323333333456667799999999999999988665778899999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||.++..||++++..+..++|+ ..|.++||||+++++..+.++++.+|+.+.+....
T Consensus 178 EADLllsfGYeedlk~l~~~LPr---------------~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e------- 235 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPR---------------IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE------- 235 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCc---------------hhhheeehhhhhhHHHHHHHHhccCCeEEEecccc-------
Confidence 99999999999999999999996 78999999999999999999999999999887764
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
...|.++.|+++.|..++|+..++.+++-.+ ..+|+|||+||.+.+..+.
T Consensus 236 ---------------------------l~~~dqL~Qy~v~cse~DKflllyallKL~L---I~gKsliFVNtIdr~YrLk 285 (569)
T KOG0346|consen 236 ---------------------------LPNPDQLTQYQVKCSEEDKFLLLYALLKLRL---IRGKSLIFVNTIDRCYRLK 285 (569)
T ss_pred ---------------------------CCCcccceEEEEEeccchhHHHHHHHHHHHH---hcCceEEEEechhhhHHHH
Confidence 3467899999999999999999999998765 3689999999999999998
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc---------------------
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV--------------------- 395 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv--------------------- 395 (590)
-+|..+ |++.+.|+|.|+.+.|..++++|++|-.+++||||.
T Consensus 286 LfLeqF-----------------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 286 LFLEQF-----------------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred HHHHHh-----------------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCC
Confidence 888888 888899999999999999999999999999999992
Q ss_pred --------------cccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-------
Q 007774 396 --------------AARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH------- 454 (590)
Q Consensus 396 --------------~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~------- 454 (590)
.+|||||.+|.+|+|||+|.++..||||+|||||+|++|.++.|+.|.|..-...++..
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~~~ 428 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDENRQ 428 (569)
T ss_pred CccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHHhh
Confidence 47999999999999999999999999999999999999999999999886633333332
Q ss_pred -CC-CCccccch-hhcccCCcCCCCccccccccccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-H-HHHhhcccc
Q 007774 455 -GV-SLTEYPLL-KVLDSFPLYGQKPRVKKFLTTESHPWILSLQNALESFIIHESKMKKLAKDAFCSW-V-RAYTAHRGE 529 (590)
Q Consensus 455 -~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~-~-r~y~~~~~~ 529 (590)
+. .+.+|++. +-+++|.. .+.+..+++-+....+..+.+.-.+-..|- + .+|.+++++
T Consensus 429 ~~~qilqPY~f~~eevesfry-----------------R~eD~~ravTkvAvreaR~kEikqEll~SeKLK~~FeeNprd 491 (569)
T KOG0346|consen 429 EGRQILQPYQFRMEEVESFRY-----------------RAEDALRAVTKVAVREARLKEIKQELLNSEKLKAFFEENPRD 491 (569)
T ss_pred cCccccccccchHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcChHH
Confidence 22 23333331 12222221 123344444444555555555555544443 4 345788888
Q ss_pred cccccccCCCChHHHHhhcCCCCCCccc
Q 007774 530 LKRIFTLKKLHLGHVAKSFALKEQPSLV 557 (590)
Q Consensus 530 ~~~if~~~~l~~~~~a~~f~l~~~p~~~ 557 (590)
+..+-|-+.|++++++.. |.++|.++
T Consensus 492 l~lLrhDkpl~~~~~qph--L~dvpeYl 517 (569)
T KOG0346|consen 492 LQLLRHDKPLRLAIVQPH--LKDVPEYL 517 (569)
T ss_pred HHHhhcCCcccccccchh--hccCchhh
Confidence 888888899999998766 77888654
No 10
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-71 Score=525.00 Aligned_cols=375 Identities=34% Similarity=0.550 Sum_probs=338.9
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
.+..+|+.|||++|+.+.| ..||+..|||+|+.|||.||+|+|++-+|.||||||.+|.+|++++|... ..|.
T Consensus 4 ~t~~~F~~LGl~~Wlve~l-~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~gi 76 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQL-KALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGI 76 (442)
T ss_pred cccCchhhcCccHHHHHHH-HHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcc
Confidence 3557899999999999999 57999999999999999999999999999999999999999999999763 3688
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc---CCCCCCcee
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT---SSFLHTNLR 171 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~---~~~~~~~l~ 171 (590)
.++|++||||||.|+.+.+..+.+. -...+++++||.+.-.+...+..+++++|+||||+.+|+... -.+.+..++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~-l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKL-LNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhccc-ccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 9999999999999999999988874 457889999999999999999999999999999999999886 345678999
Q ss_pred EEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCC
Q 007774 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (590)
Q Consensus 172 ~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~ 251 (590)
++|+||||++++..|.+.++.+++-+|. .+|+++||||+++.+..+.......+..+....
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP~---------------~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~---- 216 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLPK---------------PRQTLLFSATITDTIKQLFGCPITKSIAFELEV---- 216 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCCC---------------ccceEEEEeehhhHHHHhhcCCcccccceEEec----
Confidence 9999999999999999999999999996 689999999999999988776655432221111
Q ss_pred CCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhh
Q 007774 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~ 331 (590)
....++++.|.+.|+.++...|-..|+..|...-.. .+..++||++++.+
T Consensus 217 -----------------------------~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~-~~~simIFvnttr~ 266 (442)
T KOG0340|consen 217 -----------------------------IDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENK-ENGSIMIFVNTTRE 266 (442)
T ss_pred -----------------------------cCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhc-cCceEEEEeehhHH
Confidence 112568899999999999999999999999886432 57899999999999
Q ss_pred HHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEe
Q 007774 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (590)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~ 411 (590)
++.++..|+.+ ++.+..+||.|+|++|...+.+|+.+...|||||||++||+|||.|++||||
T Consensus 267 cQ~l~~~l~~l-----------------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~ 329 (442)
T KOG0340|consen 267 CQLLSMTLKNL-----------------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNH 329 (442)
T ss_pred HHHHHHHHhhh-----------------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEec
Confidence 99999999988 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 412 d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
|.|.+|.+|+||+|||+|+|+.|.++.|+++.|.+.+..+++. |-.+.|++.
T Consensus 330 diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 330 DIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred CCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999987 777777765
No 11
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-68 Score=489.24 Aligned_cols=374 Identities=30% Similarity=0.516 Sum_probs=336.8
Q ss_pred ccccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCC
Q 007774 10 TVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRID 89 (590)
Q Consensus 10 ~~~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~ 89 (590)
..+.+....+|+++||.+++++.+++ +||+.|..+|++|||.++.|+||+++|+.|+|||.+|.+.+++.+.-.
T Consensus 19 Ts~~~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~----- 92 (400)
T KOG0328|consen 19 TSEKVKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS----- 92 (400)
T ss_pred eccCcccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----
Confidence 45566777899999999999999985 799999999999999999999999999999999999999888876431
Q ss_pred CCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCc
Q 007774 90 RSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTN 169 (590)
Q Consensus 90 ~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~ 169 (590)
....+++||+||||||.|+.+++..+..+++ +.+....||.+...+...+.-|.+++.|||||+++.+.. ..+....
T Consensus 93 -~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn-vq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~ 169 (400)
T KOG0328|consen 93 -VRETQALILSPTRELAVQIQKVILALGDYMN-VQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRA 169 (400)
T ss_pred -cceeeEEEecChHHHHHHHHHHHHHhccccc-ceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-ccccccc
Confidence 3457899999999999999999999988655 555667789988888888889999999999999999987 5566789
Q ss_pred eeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCC
Q 007774 170 LRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249 (590)
Q Consensus 170 l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~ 249 (590)
+++||+||||.|++.||..++..|++++|. ..|++++|||+|..+.+....++.+|+.+-+..+.
T Consensus 170 vkmlVLDEaDemL~kgfk~Qiydiyr~lp~---------------~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrde 234 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNKGFKEQIYDIYRYLPP---------------GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDE 234 (400)
T ss_pred eeEEEeccHHHHHHhhHHHHHHHHHHhCCC---------------CceEEEEeccCcHHHHHHHHHhcCCceeEEEecCC
Confidence 999999999999999999999999999996 79999999999999999999999999998887664
Q ss_pred CCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCC-hHHHHHHHHHhhhcccCCceEEEEecc
Q 007774 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFST 328 (590)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-k~~~L~~~l~~~~~~~~~~k~iVF~~t 328 (590)
...+.++|+|+.+..++ |++.|+.+-..+. -..++|||||
T Consensus 235 -----------------------------------ltlEgIKqf~v~ve~EewKfdtLcdLYd~Lt----ItQavIFcnT 275 (400)
T KOG0328|consen 235 -----------------------------------LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT----ITQAVIFCNT 275 (400)
T ss_pred -----------------------------------CchhhhhhheeeechhhhhHhHHHHHhhhhe----hheEEEEecc
Confidence 23466889999998777 8988888765542 4689999999
Q ss_pred hhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEE
Q 007774 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI 408 (590)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~V 408 (590)
+..|+|+.+.+... .+.+..+||+|++++|.+++++|+.|+.+|||+|||-+||+|+|.|++|
T Consensus 276 k~kVdwLtekm~~~-----------------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslv 338 (400)
T KOG0328|consen 276 KRKVDWLTEKMREA-----------------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLV 338 (400)
T ss_pred cchhhHHHHHHHhh-----------------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEE
Confidence 99999999999887 6789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 409 IQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 409 I~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
||||.|.+.+.|+||+||.||.|++|.++.|+...|...+..+++. +..+.++|+
T Consensus 339 iNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 339 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred EecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999999999999999999999999999886 677777765
No 12
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.8e-68 Score=522.70 Aligned_cols=377 Identities=31% Similarity=0.537 Sum_probs=335.2
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCC--C-CCCCCCe
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSP--R-IDRSSGT 94 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~--~-~~~~~~~ 94 (590)
.+|++.+++.++++.+ +..||..|||+|..+||..++++|+|..|.||||||++|++|++..+.+..+ + .....|+
T Consensus 245 rnwEE~~~P~e~l~~I-~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVI-KKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred cChhhcCCCHHHHHHH-HhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 4899999999999988 5679999999999999999999999999999999999999999998876552 2 1335799
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
+++|++||||||+|+.++..+++.+++ +.+..++||.+...+--.+..|++|+|+|||+|++.|.+ ..+.+....++|
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg-~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qctyvv 401 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVV 401 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhccccc-ceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCceEe
Confidence 999999999999999999999999776 667778899888877667889999999999999999987 456678899999
Q ss_pred EechhhhhhcCchHHHHHHHHHhccCCCCCCCCCC----------CccccCceEEEEeecccchHHHHHHhhcCCCEEEe
Q 007774 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGN----------EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (590)
Q Consensus 175 lDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~----------~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~ 244 (590)
+||||+|+||||++++..|+.++|..+..+..+-. .....-+|+++||||+|+.+..+++.+|.+|+.+.
T Consensus 402 ldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vt 481 (673)
T KOG0333|consen 402 LDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVT 481 (673)
T ss_pred ccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEE
Confidence 99999999999999999999999987765432111 11224499999999999999999999999999998
Q ss_pred cCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEE
Q 007774 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVV 324 (590)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iV 324 (590)
+.... ....-+.|....++.+.+...|..+|... ...++||
T Consensus 482 ig~~g-----------------------------------k~~~rveQ~v~m~~ed~k~kkL~eil~~~----~~ppiII 522 (673)
T KOG0333|consen 482 IGSAG-----------------------------------KPTPRVEQKVEMVSEDEKRKKLIEILESN----FDPPIII 522 (673)
T ss_pred eccCC-----------------------------------CCccchheEEEEecchHHHHHHHHHHHhC----CCCCEEE
Confidence 87653 23345778888899999999999999885 3679999
Q ss_pred EecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCC
Q 007774 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (590)
Q Consensus 325 F~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~ 404 (590)
|+|+.+.|+.++..|.+. ++.++.|||+-+|.+|..+++.|++|..+||||||+++||||+|+
T Consensus 523 FvN~kk~~d~lAk~LeK~-----------------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpn 585 (673)
T KOG0333|consen 523 FVNTKKGADALAKILEKA-----------------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPN 585 (673)
T ss_pred EEechhhHHHHHHHHhhc-----------------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCc
Confidence 999999999999999998 889999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHH
Q 007774 405 VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (590)
Q Consensus 405 v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~ 453 (590)
|++|||||++.+.++|.||||||||+|+.|.++.|+++.+...+..|.+
T Consensus 586 VSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq 634 (673)
T KOG0333|consen 586 VSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQ 634 (673)
T ss_pred cceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999765555554
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-65 Score=540.38 Aligned_cols=384 Identities=29% Similarity=0.449 Sum_probs=328.8
Q ss_pred cccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCC-CCC
Q 007774 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI-DRS 91 (590)
Q Consensus 13 ~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~-~~~ 91 (590)
+-++..+|++++|++.++++|. .+||..||++|.++||.++.|+|++++||||||||++|++|+++.+....... ...
T Consensus 3 ~~~~~~~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~ 81 (423)
T PRK04837 3 THLTEQKFSDFALHPQVVEALE-KKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKV 81 (423)
T ss_pred ccCCCCCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccccccc
Confidence 4456789999999999999995 68999999999999999999999999999999999999999999987543211 113
Q ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCcee
Q 007774 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLR 171 (590)
Q Consensus 92 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~ 171 (590)
.++++|||+||||||.|+++.+..+.... .+.++.++||.....+...+..+++|+|+|||+|.+++.. ..+.+++++
T Consensus 82 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~ 159 (423)
T PRK04837 82 NQPRALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQ 159 (423)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccc
Confidence 46889999999999999999999988754 4667888899988888888888999999999999999876 556788999
Q ss_pred EEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCC
Q 007774 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (590)
Q Consensus 172 ~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~ 251 (590)
+||+||||+++++||...+..++..++.. ..++++++|||++..+..+....+.+|..+.+....
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~-------------~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-- 224 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPA-------------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-- 224 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCc-------------cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC--
Confidence 99999999999999999999999998752 157889999999999999988888889887764432
Q ss_pred CCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhh
Q 007774 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~ 331 (590)
.....+.+.+.......|...|..++... ...++||||+++..
T Consensus 225 ---------------------------------~~~~~i~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lVF~~t~~~ 267 (423)
T PRK04837 225 ---------------------------------KTGHRIKEELFYPSNEEKMRLLQTLIEEE----WPDRAIIFANTKHR 267 (423)
T ss_pred ---------------------------------cCCCceeEEEEeCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHH
Confidence 11233445555555667777777777653 36799999999999
Q ss_pred HHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEe
Q 007774 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (590)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~ 411 (590)
++.++..|... ++.+..+||+|++.+|..++++|++|+..||||||+++||||+|+|++||+|
T Consensus 268 ~~~l~~~L~~~-----------------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~ 330 (423)
T PRK04837 268 CEEIWGHLAAD-----------------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNY 330 (423)
T ss_pred HHHHHHHHHhC-----------------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEe
Confidence 99999999876 7789999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCC--ccccchhhcc
Q 007774 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSL--TEYPLLKVLD 468 (590)
Q Consensus 412 d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~--~~~~~~~~~~ 468 (590)
|+|.++++|+||+|||||.|+.|.+++|+.+.|...+..+++. +..+ .+++.++++.
T Consensus 331 d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 390 (423)
T PRK04837 331 DLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDALLT 390 (423)
T ss_pred CCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhhhhh
Confidence 9999999999999999999999999999999998888888764 4443 4444455543
No 14
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-66 Score=484.71 Aligned_cols=365 Identities=29% Similarity=0.482 Sum_probs=338.9
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
++.|+++.|...++..+.+ +||+.|.|+|+++||.++.|+|+++.|..|+|||.+|++|+++.+... .+..++
T Consensus 84 G~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~------~~~IQ~ 156 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK------KNVIQA 156 (459)
T ss_pred CccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc------ccceeE
Confidence 4589999999999999975 699999999999999999999999999999999999999999998652 356789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
+|++||||||.|+.+++.++.+++. +.+...+||++..++.-++..+.+++|+||||++|+... ..-.+++..++|+|
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~D 234 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMD 234 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEec
Confidence 9999999999999999999999766 788889999999999889999999999999999999986 44567899999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||.|++..|...++.++..+|+ .+|++++|||+|-.+..+....+.+|..|..-.+
T Consensus 235 EADKlLs~~F~~~~e~li~~lP~---------------~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-------- 291 (459)
T KOG0326|consen 235 EADKLLSVDFQPIVEKLISFLPK---------------ERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-------- 291 (459)
T ss_pred hhhhhhchhhhhHHHHHHHhCCc---------------cceeeEEecccchhHHHHHHHhccCcceeehhhh--------
Confidence 99999999999999999999997 8999999999999999999999999999887654
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
-.+..+.|+|..+.+..|+.+|-.++..+- -...|||||+...|+.++
T Consensus 292 ----------------------------Ltl~GvtQyYafV~e~qKvhCLntLfskLq----INQsIIFCNS~~rVELLA 339 (459)
T KOG0326|consen 292 ----------------------------LTLKGVTQYYAFVEERQKVHCLNTLFSKLQ----INQSIIFCNSTNRVELLA 339 (459)
T ss_pred ----------------------------hhhcchhhheeeechhhhhhhHHHHHHHhc----ccceEEEeccchHhHHHH
Confidence 356789999999999999999988887653 358899999999999999
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s 416 (590)
.-+.++ |++++.+|++|-|+.|.+++..|++|.++.|||||.+.||||++.|++|||||.|.+
T Consensus 340 kKITel-----------------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~ 402 (459)
T KOG0326|consen 340 KKITEL-----------------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKN 402 (459)
T ss_pred HHHHhc-----------------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCC
Confidence 999988 889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCcccc
Q 007774 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~ 462 (590)
+++|.||+||.||.|.-|.++.+++-.|...+..+++. |-+++++|
T Consensus 403 aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 403 AETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred HHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 99999999999999999999999999999999999887 88888776
No 15
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.5e-63 Score=540.48 Aligned_cols=367 Identities=32% Similarity=0.520 Sum_probs=328.1
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|++|+|++.++++| +.+||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+... ..++++|
T Consensus 6 ~~f~~l~L~~~ll~al-~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~L 78 (629)
T PRK11634 6 TTFADLGLKAPILEAL-NDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQIL 78 (629)
T ss_pred CCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEE
Confidence 3699999999999999 56899999999999999999999999999999999999999999987542 2357899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
||+||||||.|+++.+..+...+..+.+..++||.+...+...+..+++|+|+||++|++++.. ..+.++++++|||||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDE 157 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDE 157 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEecc
Confidence 9999999999999999999887666778888999988888888888999999999999999976 556788999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||+|++++|..++..|+..+|. .+|+++||||+|..+..+...++.+|..+.+....
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp~---------------~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-------- 214 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIPE---------------GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-------- 214 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCCC---------------CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--------
Confidence 9999999999999999999986 78999999999999999999999988877654331
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
.....+.+.|..+....|...|..++... ...++||||+|+..++.+++
T Consensus 215 ---------------------------~~~~~i~q~~~~v~~~~k~~~L~~~L~~~----~~~~~IVF~~tk~~a~~l~~ 263 (629)
T PRK11634 215 ---------------------------TTRPDISQSYWTVWGMRKNEALVRFLEAE----DFDAAIIFVRTKNATLEVAE 263 (629)
T ss_pred ---------------------------ccCCceEEEEEEechhhHHHHHHHHHHhc----CCCCEEEEeccHHHHHHHHH
Confidence 12234667777888888888888887653 35789999999999999999
Q ss_pred hhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCCh
Q 007774 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (590)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~ 417 (590)
.|... ++.+..+||+|++.+|.+++++|++|+.+||||||++++|||+|+|++||+||+|.++
T Consensus 264 ~L~~~-----------------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~ 326 (629)
T PRK11634 264 ALERN-----------------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDS 326 (629)
T ss_pred HHHhC-----------------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCH
Confidence 99876 7789999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 418 TEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 418 ~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
+.|+||+|||||+|+.|.+++|+.+.|..+++.+++. ++.+.++++
T Consensus 327 e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~ 373 (629)
T PRK11634 327 ESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 373 (629)
T ss_pred HHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecC
Confidence 9999999999999999999999999999999999875 666666544
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.3e-64 Score=533.72 Aligned_cols=366 Identities=34% Similarity=0.501 Sum_probs=327.5
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|++|+|++.++++| +.+||..|||+|+++||.++.|+|++++||||||||++|++|+++.+... ..+.++
T Consensus 3 ~~~f~~l~l~~~l~~~l-~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~ 75 (460)
T PRK11776 3 MTAFSTLPLPPALLANL-NELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQA 75 (460)
T ss_pred CCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceE
Confidence 45899999999999999 56899999999999999999999999999999999999999999988542 235679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
||++||||||.|+.+.++.+........+..++||.+...+...+..+++|+|+|||+|.+++.. ..+.++++++||+|
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViD 154 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLD 154 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEE
Confidence 99999999999999999998876656778889999998888888889999999999999999976 45677899999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||+++++||...+..++..++. .+|+++||||+++.+..+....+.+|..+.+....
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~---------------~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~------- 212 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPA---------------RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH------- 212 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCc---------------ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-------
Confidence 99999999999999999999986 78999999999999999999999999887765431
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
....+.++++.++...|...|..++... .+.++||||+|++.++.++
T Consensus 213 -----------------------------~~~~i~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lVF~~t~~~~~~l~ 259 (460)
T PRK11776 213 -----------------------------DLPAIEQRFYEVSPDERLPALQRLLLHH----QPESCVVFCNTKKECQEVA 259 (460)
T ss_pred -----------------------------CCCCeeEEEEEeCcHHHHHHHHHHHHhc----CCCceEEEECCHHHHHHHH
Confidence 1234667888888888888888888653 4578999999999999999
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s 416 (590)
+.|... ++.+..+||+|++.+|..+++.|++|+.+||||||+++||+|+|++++||+||+|.+
T Consensus 260 ~~L~~~-----------------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~ 322 (460)
T PRK11776 260 DALNAQ-----------------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARD 322 (460)
T ss_pred HHHHhC-----------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCC
Confidence 999876 778999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCcccc
Q 007774 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~ 462 (590)
+..|+||+|||||+|+.|.+++|+.+.|...+..+++. +..+...+
T Consensus 323 ~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~ 369 (460)
T PRK11776 323 PEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEP 369 (460)
T ss_pred HhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceec
Confidence 99999999999999999999999999999988888775 55444433
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.4e-63 Score=529.04 Aligned_cols=367 Identities=33% Similarity=0.524 Sum_probs=318.2
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
++|++|+|++++++.|. .+||..||++|.++||.++.|+|+++.||||||||++|++|+++.+.............++|
T Consensus 1 ~~f~~l~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 1 MSFDSLGLSPDILRAVA-EQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CCHHHcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 37999999999999994 68999999999999999999999999999999999999999999986543221122346899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
||+||||||.|+++.+..+.... .+....++||.+...+...+..+++|+|+||++|++++.. ..+.++.+++||+||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDE 157 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDE 157 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeec
Confidence 99999999999999999987744 3566778899888877778888899999999999998876 456678999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||++++++|...+..++..++. .+|+++||||+++.+..+....+.+|..+.+....
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~---------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-------- 214 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPA---------------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-------- 214 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCc---------------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--------
Confidence 9999999999999999999875 78999999999999999998888888877654321
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
.....+.+.+..++...+...+..++.. ....++||||+++..++.+++
T Consensus 215 ---------------------------~~~~~i~~~~~~~~~~~k~~~l~~l~~~----~~~~~~lVF~~t~~~~~~l~~ 263 (456)
T PRK10590 215 ---------------------------TASEQVTQHVHFVDKKRKRELLSQMIGK----GNWQQVLVFTRTKHGANHLAE 263 (456)
T ss_pred ---------------------------ccccceeEEEEEcCHHHHHHHHHHHHHc----CCCCcEEEEcCcHHHHHHHHH
Confidence 1234456666667666666666655543 345799999999999999999
Q ss_pred hhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCCh
Q 007774 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (590)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~ 417 (590)
.|... ++.+..+||+|++.+|.++++.|++|+..||||||+++||||+|+|++||+||+|.++
T Consensus 264 ~L~~~-----------------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~ 326 (456)
T PRK10590 264 QLNKD-----------------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVP 326 (456)
T ss_pred HHHHC-----------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCH
Confidence 99876 7788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCC
Q 007774 418 TEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSL 458 (590)
Q Consensus 418 ~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~ 458 (590)
.+|+||+|||||+|..|.+++|+.+.|..++..+++. +.++
T Consensus 327 ~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 327 EDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred HHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999988875 4444
No 18
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.6e-63 Score=535.97 Aligned_cols=364 Identities=34% Similarity=0.529 Sum_probs=317.4
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|+++++++.+++.|. ++||+.||++|.++||.++.|+|+++.||||||||++|++|++..+..... .....++.+|
T Consensus 130 ~~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~gp~~L 207 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLK-NAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDGPIVL 207 (545)
T ss_pred CCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCCcEEE
Confidence 48999999999999994 689999999999999999999999999999999999999999988765321 1224578899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
||+||||||.|+++.+..+.... .+...+++||.....+...+..+++|+|+|||+|++++.. ....+..+++|||||
T Consensus 208 IL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDE 285 (545)
T PTZ00110 208 VLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDE 285 (545)
T ss_pred EECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeeh
Confidence 99999999999999999987743 4667788899888888888888999999999999999976 455678999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcC-CCEEEecCCCCCCCCccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-TPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~-~p~~i~~~~~~~~~~~~~ 256 (590)
||+|++++|...+..|+..++. .+|++++|||++..++.++...+. +|..+.+....
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~---------------~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~------- 343 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRP---------------DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD------- 343 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCC---------------CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-------
Confidence 9999999999999999998864 789999999999999999887765 57666554321
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
......+.+.+..+....|...|..++..... ...++||||++++.|+.++
T Consensus 344 ---------------------------l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~ 394 (545)
T PTZ00110 344 ---------------------------LTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLT 394 (545)
T ss_pred ---------------------------cccCCCeeEEEEEEechhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHH
Confidence 11234566777777788888888888877642 4679999999999999999
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s 416 (590)
..|... ++.+..+||+|++.+|..++++|++|+..||||||+++||||+|+|++||+||+|.+
T Consensus 395 ~~L~~~-----------------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s 457 (545)
T PTZ00110 395 KELRLD-----------------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQ 457 (545)
T ss_pred HHHHHc-----------------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCC
Confidence 999765 678889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHH
Q 007774 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~ 453 (590)
+++|+||+|||||+|+.|.+++|+++.+...+..|.+
T Consensus 458 ~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 458 IEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred HHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 9999999999999999999999999998776665544
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-63 Score=535.92 Aligned_cols=373 Identities=34% Similarity=0.484 Sum_probs=322.9
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCC-CCCCCe
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI-DRSSGT 94 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~-~~~~~~ 94 (590)
+..+|++|+|++.+++.| +.+||..||++|.++||.++.|+|++++||||||||++|++|+++.+....... ....+.
T Consensus 7 ~~~~f~~l~l~~~l~~~L-~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ 85 (572)
T PRK04537 7 TDLTFSSFDLHPALLAGL-ESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDP 85 (572)
T ss_pred CCCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCc
Confidence 335799999999999999 568999999999999999999999999999999999999999999886532111 112357
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
++|||+||+|||.|+++.+..+.... .+.+..++||.....+...+..+++|+|+||++|++++.....+.+..+++||
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lV 164 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICV 164 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeE
Confidence 89999999999999999999988744 46778899999888888888888999999999999999876667788999999
Q ss_pred EechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCc
Q 007774 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (590)
Q Consensus 175 lDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~ 254 (590)
|||||++++++|...+..|+..++... .+|+++||||++..+..+....+.+|..+.+....
T Consensus 165 iDEAh~lld~gf~~~i~~il~~lp~~~-------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~----- 226 (572)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERG-------------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET----- 226 (572)
T ss_pred ecCHHHHhhcchHHHHHHHHHhccccc-------------CceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-----
Confidence 999999999999999999999998532 68999999999999999988888887666543321
Q ss_pred ccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHH
Q 007774 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
.....+.+.+..+....+...|..++.. ....++||||+|++.++.
T Consensus 227 ------------------------------~~~~~i~q~~~~~~~~~k~~~L~~ll~~----~~~~k~LVF~nt~~~ae~ 272 (572)
T PRK04537 227 ------------------------------ITAARVRQRIYFPADEEKQTLLLGLLSR----SEGARTMVFVNTKAFVER 272 (572)
T ss_pred ------------------------------ccccceeEEEEecCHHHHHHHHHHHHhc----ccCCcEEEEeCCHHHHHH
Confidence 1234456666666677787777777764 346799999999999999
Q ss_pred HHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC
Q 007774 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (590)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p 414 (590)
+++.|... ++.+..+||+|++.+|..+++.|++|+.+||||||+++||||+|+|++||+||+|
T Consensus 273 l~~~L~~~-----------------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P 335 (572)
T PRK04537 273 VARTLERH-----------------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLP 335 (572)
T ss_pred HHHHHHHc-----------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCC
Confidence 99999876 7789999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCc
Q 007774 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLT 459 (590)
Q Consensus 415 ~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~ 459 (590)
.++++|+||+|||||.|..|.+++|+.+.|...+..+++. +..+.
T Consensus 336 ~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 336 FDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred CCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999998888888764 44443
No 20
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-64 Score=481.67 Aligned_cols=363 Identities=32% Similarity=0.535 Sum_probs=318.9
Q ss_pred ccCCccC-CCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 16 ASCSFSS-LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 16 ~~~~f~~-l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
..++|++ +...+++...+. ++||.+|||+|.+++|.+|+|.|++..|+||+|||++||+|-+.++..+..+.....++
T Consensus 217 P~ctFddAFq~~pevmenIk-K~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p 295 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIK-KTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGP 295 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHH-hccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCC
Confidence 3457864 578899999995 67999999999999999999999999999999999999999998887766655566789
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
.+|+++||||||.|+.-...++. +......+++||.++..+.+.++++.+|+|+|||||.++... ...++.++.|||
T Consensus 296 ~~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlV 372 (629)
T KOG0336|consen 296 GVLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLV 372 (629)
T ss_pred ceEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEE
Confidence 99999999999999998887764 456778899999999999999999999999999999987654 677889999999
Q ss_pred EechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCc
Q 007774 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (590)
Q Consensus 175 lDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~ 254 (590)
|||||+||||||+.++..|+--+.. .+|+++.|||.|+.+..|+..++.+|..+.+..-.
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRP---------------DRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd----- 432 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRP---------------DRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD----- 432 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCC---------------cceeeeecccCchHHHHHHHHhhhCceEEEecccc-----
Confidence 9999999999999999999988864 89999999999999999999999999988776543
Q ss_pred ccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHH
Q 007774 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
........|..++....+|+...-.++... ....|+||||+....++.
T Consensus 433 -----------------------------L~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m---s~ndKvIiFv~~K~~AD~ 480 (629)
T KOG0336|consen 433 -----------------------------LVAVKSVKQNIIVTTDSEKLEIVQFFVANM---SSNDKVIIFVSRKVMADH 480 (629)
T ss_pred -----------------------------eeeeeeeeeeEEecccHHHHHHHHHHHHhc---CCCceEEEEEechhhhhh
Confidence 223455677776666777887777777665 357899999999988887
Q ss_pred HHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC
Q 007774 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (590)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p 414 (590)
+..-|.- .++..-.|||+-+|.+|+..++.|+.|+++||||||+++||||+|++++|++||.|
T Consensus 481 LSSd~~l-----------------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP 543 (629)
T KOG0336|consen 481 LSSDFCL-----------------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFP 543 (629)
T ss_pred ccchhhh-----------------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCC
Confidence 7766643 37788889999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhccccCCCCCccEEEEeCccchHHHHHH
Q 007774 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDL 451 (590)
Q Consensus 415 ~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l 451 (590)
.++++|+||+|||||+|+.|.++.|+...+......|
T Consensus 544 ~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 544 RNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEEL 580 (629)
T ss_pred ccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHH
Confidence 9999999999999999999999999999886655444
No 21
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-65 Score=506.71 Aligned_cols=371 Identities=32% Similarity=0.484 Sum_probs=308.2
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEccCcchHHHHHHHHHHHHHhhcCC-----CC
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSP-----RI 88 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~l~pil~~l~~~~~-----~~ 88 (590)
-+-.-|.+|+|+..++.+| ..+||..||+||..+||.+..| .|++..|.|||||||||.+||++.+..... ..
T Consensus 178 ~DvsAW~~l~lp~~iL~aL-~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRAL-SNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred cChHHHhcCCCCHHHHHHH-HhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 3345799999999999999 5789999999999999999999 699999999999999999999996543211 00
Q ss_pred CCCCCe--eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCC-
Q 007774 89 DRSSGT--FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF- 165 (590)
Q Consensus 89 ~~~~~~--~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~- 165 (590)
....++ .+||++||||||.|+.+.+..+.. ...+.+..++||-....+.+.++..++|+|+|||||+.++.....+
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 112234 499999999999999999999888 6778899999999999888889999999999999999999876553
Q ss_pred -CCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccch----------------
Q 007774 166 -LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK---------------- 228 (590)
Q Consensus 166 -~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~---------------- 228 (590)
.+.++++||+||||||++.|+-..+..|+..|.... ...++|++.||||++-.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~----------~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~ 405 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQ----------KNRQRQTLVFSATLTLVLQQPLSSSRKKKDKED 405 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhh----------cccccceEEEEEEeehhhcChhHHhhhccchhh
Confidence 578999999999999999999999999999997322 22379999999999532
Q ss_pred -----HHHHHH-hhcC-CCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCC
Q 007774 229 -----VNHLAK-ISLE-TPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS 301 (590)
Q Consensus 229 -----~~~l~~-~~l~-~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (590)
++.+.. .+++ +|.++...... .+...+....+.|+..+
T Consensus 406 ~~~~kiq~Lmk~ig~~~kpkiiD~t~q~-----------------------------------~ta~~l~Es~I~C~~~e 450 (731)
T KOG0347|consen 406 ELNAKIQHLMKKIGFRGKPKIIDLTPQS-----------------------------------ATASTLTESLIECPPLE 450 (731)
T ss_pred hhhHHHHHHHHHhCccCCCeeEecCcch-----------------------------------hHHHHHHHHhhcCCccc
Confidence 222222 2222 44555444331 23344445555555555
Q ss_pred hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHH
Q 007774 302 RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGA 381 (590)
Q Consensus 302 k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~ 381 (590)
|-..|+.+|-. .++++|||||+.+++..++-+|+.+ ++..+.||+.|.|++|.+.+++
T Consensus 451 KD~ylyYfl~r-----yPGrTlVF~NsId~vKRLt~~L~~L-----------------~i~p~~LHA~M~QKqRLknLEk 508 (731)
T KOG0347|consen 451 KDLYLYYFLTR-----YPGRTLVFCNSIDCVKRLTVLLNNL-----------------DIPPLPLHASMIQKQRLKNLEK 508 (731)
T ss_pred cceeEEEEEee-----cCCceEEEechHHHHHHHHHHHhhc-----------------CCCCchhhHHHHHHHHHHhHHH
Confidence 55555444443 3689999999999999999999988 8888999999999999999999
Q ss_pred hhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 382 FKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 382 F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
|++....||||||||+||||||+|.+||||..|.+.+.|+||.|||||++..|.+++|+.|.|...+..|.+.
T Consensus 509 F~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~kt 581 (731)
T KOG0347|consen 509 FKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKT 581 (731)
T ss_pred HhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877753
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.8e-62 Score=526.61 Aligned_cols=363 Identities=31% Similarity=0.523 Sum_probs=313.5
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCC-CCCCCCeeE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR-IDRSSGTFA 96 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~-~~~~~~~~~ 96 (590)
.+|++++|++.+++.|. .+||..|||+|.++||.++.|+|+++.||||||||++|++|++..+...... .....++.+
T Consensus 121 ~~f~~~~l~~~l~~~L~-~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 121 LSFSSCGLPPKLLLNLE-TAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred cCHHhCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 47999999999999995 6799999999999999999999999999999999999999999987643211 112357899
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
|||+||||||.|+++.++.+..... .....++||.....+...+..+++|+|+|||+|.+++... ...++++++||+|
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~-~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lViD 277 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLP-FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVLD 277 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEEee
Confidence 9999999999999999998877543 5567788898888787888889999999999999999864 6678899999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||+|+++||...+..|+..++ .+|++++|||+++.++.++...+.++..+.+....
T Consensus 278 Ead~ml~~gf~~~i~~i~~~l~----------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~------- 334 (518)
T PLN00206 278 EVDCMLERGFRDQVMQIFQALS----------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN------- 334 (518)
T ss_pred cHHHHhhcchHHHHHHHHHhCC----------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-------
Confidence 9999999999999999998886 58999999999999999999988888887765432
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
.....+.+.+..++...+...|..++.... ....++||||+++..++.++
T Consensus 335 ----------------------------~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~--~~~~~~iVFv~s~~~a~~l~ 384 (518)
T PLN00206 335 ----------------------------RPNKAVKQLAIWVETKQKKQKLFDILKSKQ--HFKPPAVVFVSSRLGADLLA 384 (518)
T ss_pred ----------------------------CCCcceeEEEEeccchhHHHHHHHHHHhhc--ccCCCEEEEcCCchhHHHHH
Confidence 112345666777777778888888876542 22358999999999999999
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s 416 (590)
..|... .++.+..+||+|++.+|..++++|++|+..||||||+++||||+|+|++||+||+|.+
T Consensus 385 ~~L~~~----------------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s 448 (518)
T PLN00206 385 NAITVV----------------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNT 448 (518)
T ss_pred HHHhhc----------------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCC
Confidence 988653 1678889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCccEEEEeCccchHHHHHHH
Q 007774 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~ 452 (590)
..+|+||+|||||.|..|.+++|+.+.+...+..+.
T Consensus 449 ~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 449 IKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred HHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 999999999999999999999999998865544443
No 23
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-64 Score=481.19 Aligned_cols=361 Identities=33% Similarity=0.549 Sum_probs=317.8
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcC--CCCCCCCCee
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYS--PRIDRSSGTF 95 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~--~~~~~~~~~~ 95 (590)
.+|.++.++..+++.|++ -|+..|||+|.+.+|.+++|+|.+-.|-||||||++|.+|++-..+.+. -.+.++.|+.
T Consensus 170 ksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 170 KSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred hhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 489999999999999976 5999999999999999999999999999999999999999887655432 3466788999
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhh-----cCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCce
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHR-----FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNL 170 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~-----~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l 170 (590)
.||+||+||||.|+++.+..++.. ++.+..++..||.....+.+..+.|.+|+|+|||||.+.|.. +...++-.
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~C 327 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDAC 327 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHHH
Confidence 999999999999999999998764 345667788999999999999999999999999999999976 56677888
Q ss_pred eEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCC
Q 007774 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250 (590)
Q Consensus 171 ~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~ 250 (590)
+||++||||||.|+||+++++.|+.+++. ++|+++||||+|..++.+++..+..|+.+.+....-
T Consensus 328 RyL~lDEADRmiDmGFEddir~iF~~FK~---------------QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGA 392 (610)
T KOG0341|consen 328 RYLTLDEADRMIDMGFEDDIRTIFSFFKG---------------QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGA 392 (610)
T ss_pred HHhhhhhHHHHhhccchhhHHHHHHHHhh---------------hhheeeeeccccHHHHHHHHhhcccceEEecccccc
Confidence 99999999999999999999999999986 899999999999999999999999999999876531
Q ss_pred CCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchh
Q 007774 251 PEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (590)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~ 330 (590)
. .-+..|...++..+.|+..|++.|.+. ..+++|||....
T Consensus 393 A-----------------------------------sldViQevEyVkqEaKiVylLeCLQKT-----~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 393 A-----------------------------------SLDVIQEVEYVKQEAKIVYLLECLQKT-----SPPVLIFAEKKA 432 (610)
T ss_pred c-----------------------------------chhHHHHHHHHHhhhhhhhHHHHhccC-----CCceEEEecccc
Confidence 1 112233333456678888888877653 579999999999
Q ss_pred hHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEE
Q 007774 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ 410 (590)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~ 410 (590)
.|+.++++|--. |+.+..+||+-.|.+|...++.|+.|+.+|||||||++.|+|||++.+|||
T Consensus 433 DVD~IhEYLLlK-----------------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN 495 (610)
T KOG0341|consen 433 DVDDIHEYLLLK-----------------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN 495 (610)
T ss_pred ChHHHHHHHHHc-----------------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc
Confidence 999999988433 889999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhHHHhhhccccCCCCCccEEEEeCcc-chHHHHHHH
Q 007774 411 YDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDLE 452 (590)
Q Consensus 411 ~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~-e~~~~~~l~ 452 (590)
||+|.+++.|+||+|||||.|+.|.+..|++.. |...+-.|+
T Consensus 496 yDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK 538 (610)
T KOG0341|consen 496 YDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLK 538 (610)
T ss_pred CCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHH
Confidence 999999999999999999999999999999974 444444443
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-63 Score=493.52 Aligned_cols=367 Identities=33% Similarity=0.516 Sum_probs=322.7
Q ss_pred CccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCC----CCCCCCCe
Q 007774 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSP----RIDRSSGT 94 (590)
Q Consensus 19 ~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~----~~~~~~~~ 94 (590)
.|++-.+.+.+...+ +..|+..|||||+.+||.+..|+|++++|+||||||.||++|++..+....+ .......+
T Consensus 75 ~f~~~~l~~~l~~ni-~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNI-KRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcc-ccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 788778888999998 5679999999999999999999999999999999999999999999887532 12222358
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
++||++||||||.|++++.+++.- ..+..+..++||.+...+...+..+++|+|+|||||.+.+.. ..+.+++++++|
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~-~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~v 231 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSY-LSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLV 231 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcc-cccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEE
Confidence 999999999999999999999876 556778889999999999999999999999999999999876 667889999999
Q ss_pred Eechhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCC-CEEEecCCCCCCC
Q 007774 175 FDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKKLPE 252 (590)
Q Consensus 175 lDEah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~-p~~i~~~~~~~~~ 252 (590)
|||||+|+| |||+.+|+.|+....... ...+|+++||||.|..++.++..++.+ ...+.+....
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~-----------~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg--- 297 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPP-----------KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG--- 297 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCC-----------ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec---
Confidence 999999999 999999999999886421 237999999999999999998888775 6666665442
Q ss_pred CcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCC-----ceEEEEec
Q 007774 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVS-----QKLVVFFS 327 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~-----~k~iVF~~ 327 (590)
...+++.|....+....|...|+.+|......... ++++|||.
T Consensus 298 --------------------------------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvE 345 (482)
T KOG0335|consen 298 --------------------------------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVE 345 (482)
T ss_pred --------------------------------cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEee
Confidence 35678899999999999999999999865522122 38999999
Q ss_pred chhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcE
Q 007774 328 TCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (590)
Q Consensus 328 t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~ 407 (590)
|.+.+.++..+|... ++++-.+||+.+|.+|.+.++.|+.|+..|||||+|++||||+|+|++
T Consensus 346 t~~~~d~l~~~l~~~-----------------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~h 408 (482)
T KOG0335|consen 346 TKRGADELAAFLSSN-----------------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKH 408 (482)
T ss_pred ccchhhHHHHHHhcC-----------------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCce
Confidence 999999999999887 778889999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHH
Q 007774 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDL 451 (590)
Q Consensus 408 VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l 451 (590)
||+||+|.+..+|+||+|||||+|..|.++.|+........+.|
T Consensus 409 VInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 409 VINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred eEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 99999999999999999999999999999999996655444433
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6e-61 Score=508.26 Aligned_cols=361 Identities=33% Similarity=0.518 Sum_probs=313.8
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|++|+|++.+++.|. .+||..||++|.++||.++.|+|+++.||||||||++|++|+++.+...... ...+.++|
T Consensus 1 ~~f~~l~l~~~l~~~l~-~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~l 77 (434)
T PRK11192 1 TTFSELELDESLLEALQ-DKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRIL 77 (434)
T ss_pred CCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEE
Confidence 36999999999999994 6899999999999999999999999999999999999999999998753221 23457899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
|++||+|||.|+++.+..+.... .+.+..++||.........+..+++|+|+|||+|++++.. ..+.+.++++||+||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDE 155 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDE 155 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEEC
Confidence 99999999999999999998744 4678889999888887777888899999999999999876 566778999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccc-hHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~-~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
||++++++|...+..+...++. ..|+++||||++. .+..+....+.+|..+......
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~---------------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~------- 213 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRW---------------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR------- 213 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCcc---------------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-------
Confidence 9999999999999999888764 6899999999974 5788888888888877654431
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecC-CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~ 335 (590)
.....+.+.+..++. ..+...|..++.. ....++||||++++.++.+
T Consensus 214 ----------------------------~~~~~i~~~~~~~~~~~~k~~~l~~l~~~----~~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 214 ----------------------------RERKKIHQWYYRADDLEHKTALLCHLLKQ----PEVTRSIVFVRTRERVHEL 261 (434)
T ss_pred ----------------------------ccccCceEEEEEeCCHHHHHHHHHHHHhc----CCCCeEEEEeCChHHHHHH
Confidence 122345566665553 4566666666654 3467999999999999999
Q ss_pred HHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCC
Q 007774 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (590)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~ 415 (590)
+..|... ++.+..+||+|++.+|..+++.|++|+..||||||+++||||+|+|++||+||+|.
T Consensus 262 ~~~L~~~-----------------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~ 324 (434)
T PRK11192 262 AGWLRKA-----------------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR 324 (434)
T ss_pred HHHHHhC-----------------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC
Confidence 9999875 77899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 416 s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
+...|+||+|||||+|..|.+++|+..+|..++..++..
T Consensus 325 s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~ 363 (434)
T PRK11192 325 SADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERY 363 (434)
T ss_pred CHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888753
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.8e-60 Score=503.17 Aligned_cols=379 Identities=30% Similarity=0.443 Sum_probs=320.0
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCC-CCCCeeE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRID-RSSGTFA 96 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~-~~~~~~~ 96 (590)
..|.+++|++.+.++|. ++||..||+||.++|+.++.|+|+++.||||||||++|++|+++.+........ ...+.++
T Consensus 87 ~~f~~~~l~~~l~~~l~-~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 87 TRFHDFNLAPELMHAIH-DLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCHhHCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 47999999999999995 589999999999999999999999999999999999999999999876432111 1225789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhc-CCCcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
|||+||+|||.|+++.++.+.... .+.+..++||.+...+...+. ..++|+|+||++|++++.. ....++++++|||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lVi 243 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVL 243 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEEe
Confidence 999999999999999999987744 356677888877766666654 4689999999999998865 4456789999999
Q ss_pred echhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcc
Q 007774 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (590)
Q Consensus 176 DEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~ 255 (590)
||||++++++|...+..|+..++... .+|++++|||++..+..++...+.+|..+.+....
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~-------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~------ 304 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKE-------------ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN------ 304 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCC-------------CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc------
Confidence 99999999999999999999886432 57999999999999999999888888877654332
Q ss_pred cccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHH
Q 007774 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (590)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~ 335 (590)
.....+.+.+..+....+...|..++.. ....++||||++++.++.+
T Consensus 305 -----------------------------~~~~~~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~IVF~~s~~~~~~l 351 (475)
T PRK01297 305 -----------------------------VASDTVEQHVYAVAGSDKYKLLYNLVTQ----NPWERVMVFANRKDEVRRI 351 (475)
T ss_pred -----------------------------CCCCcccEEEEEecchhHHHHHHHHHHh----cCCCeEEEEeCCHHHHHHH
Confidence 1122344556666677787777777665 3457999999999999999
Q ss_pred HHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCC
Q 007774 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (590)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~ 415 (590)
++.|... ++.+..+||++++.+|.++++.|++|+..||||||++++|||+|+|++||+||+|.
T Consensus 352 ~~~L~~~-----------------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~ 414 (475)
T PRK01297 352 EERLVKD-----------------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPE 414 (475)
T ss_pred HHHHHHc-----------------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCC
Confidence 9999776 67889999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCC-ccccchhhcc
Q 007774 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSL-TEYPLLKVLD 468 (590)
Q Consensus 416 s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~-~~~~~~~~~~ 468 (590)
+..+|+||+||+||.|+.|.+++|+.+.|..++..+++. +.++ -+++..+++.
T Consensus 415 s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 415 DPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred CHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 999999999999999999999999999998888888775 5554 2444445444
No 27
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-60 Score=457.24 Aligned_cols=360 Identities=37% Similarity=0.585 Sum_probs=331.9
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
+..|.++||+..+.+++.++ ||..|||+|+++||.+|+++|++..|-||||||.||++||++.|.... ..|.++
T Consensus 20 ~g~fqsmgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ra 93 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRA 93 (529)
T ss_pred CCCccccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccce
Confidence 67999999999999999765 999999999999999999999999999999999999999999998743 357899
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
+|++||||||.|..++++++.+ .......+++||.....++..+..++|||++|||+++..... ..+.++.+.|+|+|
T Consensus 94 lilsptreLa~qtlkvvkdlgr-gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfd 171 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGR-GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFD 171 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhcc-ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeeeeh
Confidence 9999999999999999999988 445677889999999999999999999999999999865544 44788999999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||+|++|||.+.+.+++.++|. .+|+++||||+|..+-.+++.++.+|+.+.++.+.
T Consensus 172 Eadrlfemgfqeql~e~l~rl~~---------------~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet------- 229 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLPE---------------SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET------- 229 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCCC---------------cceEEEEeccCchhhHHHHHccCCCCceEEeehhh-------
Confidence 99999999999999999999997 68999999999999999999999999999876552
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
.+.+.+...+..+...+|..+|..++.... ....++||++|...|+++.
T Consensus 230 ----------------------------kise~lk~~f~~~~~a~K~aaLl~il~~~~---~~~~t~vf~~tk~hve~~~ 278 (529)
T KOG0337|consen 230 ----------------------------KISELLKVRFFRVRKAEKEAALLSILGGRI---KDKQTIVFVATKHHVEYVR 278 (529)
T ss_pred ----------------------------hcchhhhhheeeeccHHHHHHHHHHHhccc---cccceeEEecccchHHHHH
Confidence 456677888899999999999999998864 2568999999999999999
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s 416 (590)
.++... ++.+..+.|.|.+..|...+..|+.++..+||.||+++||+|+|..+.||+||.|.+
T Consensus 279 ~ll~~~-----------------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~ 341 (529)
T KOG0337|consen 279 GLLRDF-----------------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPD 341 (529)
T ss_pred HHHHhc-----------------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCC
Confidence 999988 677788999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
...|+||+||++|+|+.|.++.|+.+.|..|+-.|...
T Consensus 342 ~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 342 DKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred CceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 99999999999999999999999999999999888765
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-59 Score=459.71 Aligned_cols=363 Identities=32% Similarity=0.532 Sum_probs=322.7
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
...++|+++++++.|..++.. -.|.+|||+|-+++|..+.|+|++-.|.||||||.||+.|++-++..+. ...+++|+
T Consensus 220 rpvtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~-eL~~g~gP 297 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP-ELKPGEGP 297 (731)
T ss_pred CCcchhhhcCchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchh-hhcCCCCC
Confidence 345689999999999999964 5899999999999999999999999999999999999999999887543 34457899
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
.+||++||||||.|++.++++|++.++ +.+.+++||.....+...|..++.|||||||||++++.. +..++.++.+||
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~yg-l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV 375 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYG-LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLV 375 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhcc-ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEE
Confidence 999999999999999999999998665 667778888888888889999999999999999999987 667888999999
Q ss_pred EechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCc
Q 007774 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (590)
Q Consensus 175 lDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~ 254 (590)
|||||+|.++||+.+++.|..++.. ++|+++||||++..++.+++-.|.+|+.+....-.
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirp---------------drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg----- 435 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRP---------------DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG----- 435 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCC---------------cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-----
Confidence 9999999999999999999999975 89999999999999999999999999988765432
Q ss_pred ccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCC-ChHHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
..-+.+.|...+|+.+ .|+..|..-|-... ..+++|||+.-...++
T Consensus 436 ------------------------------ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~---S~gkvlifVTKk~~~e 482 (731)
T KOG0339|consen 436 ------------------------------EANEDITQTVSVCPSEEKKLNWLLRHLVEFS---SEGKVLIFVTKKADAE 482 (731)
T ss_pred ------------------------------ccccchhheeeeccCcHHHHHHHHHHhhhhc---cCCcEEEEEeccCCHH
Confidence 1234566777777654 67776666665543 4579999999999999
Q ss_pred HHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecC
Q 007774 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (590)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~ 413 (590)
.+...|+-. ++.+..+||+|.|.+|.+++.+|+++...||++||+++||+|+|.+..||+||.
T Consensus 483 ~i~a~Lklk-----------------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ 545 (731)
T KOG0339|consen 483 EIAANLKLK-----------------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDF 545 (731)
T ss_pred HHHHHhccc-----------------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccc
Confidence 999988765 889999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHH
Q 007774 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDL 451 (590)
Q Consensus 414 p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l 451 (590)
-.+++.|.||+|||||+|..|.++.++++.|..|...|
T Consensus 546 ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred cchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 99999999999999999999999999999997765444
No 29
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-59 Score=455.70 Aligned_cols=380 Identities=29% Similarity=0.442 Sum_probs=317.2
Q ss_pred CccCCCCCHHHHHH----------HHHhCCCCCCcHHHHHHHHHHhc---------CCcEEEEccCcchHHHHHHHHHHH
Q 007774 19 SFSSLGLHSTLCDQ----------LRERLGFEAPTKVQAQAIPVILS---------GRHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 19 ~f~~l~l~~~l~~~----------l~~~~g~~~~t~~Q~~~i~~il~---------g~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
.|+.+++++.+... + ..|++++..|+|..++|.++. ++|++|.||||||||++|.+||++
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l-~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLL-VKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHH-HHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 57777777655444 6 468999999999999999863 589999999999999999999999
Q ss_pred HHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCC-----CcEEEECChH
Q 007774 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKG-----ISILVATPGR 154 (590)
Q Consensus 80 ~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~~IlV~Tp~r 154 (590)
.|.+... +..++|||+||++|+.|+++++..+....+ ..++.+.|..+...+...+.+. +||+|+||||
T Consensus 207 ~L~~R~v-----~~LRavVivPtr~L~~QV~~~f~~~~~~tg-L~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGR 280 (620)
T KOG0350|consen 207 LLSSRPV-----KRLRAVVIVPTRELALQVYDTFKRLNSGTG-LAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGR 280 (620)
T ss_pred HHccCCc-----cceEEEEEeeHHHHHHHHHHHHHHhccCCc-eEEEecccccchHHHHHHHhcCCCccccceEEcCchH
Confidence 9976432 347899999999999999999999988554 5578888888888887776543 4899999999
Q ss_pred HHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCC--------C-----------CCCCccccC
Q 007774 155 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSI--------G-----------EGNEVSNVK 215 (590)
Q Consensus 155 l~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~--------~-----------~~~~~~~~~ 215 (590)
|.||+.+.+.|.++++++||+||||||++..|...+..++..+.....-+. + .........
T Consensus 281 LVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~ 360 (620)
T KOG0350|consen 281 LVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPP 360 (620)
T ss_pred HHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCch
Confidence 999999999999999999999999999999999998888877764311100 0 000112234
Q ss_pred ceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEE
Q 007774 216 RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYV 295 (590)
Q Consensus 216 ~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (590)
.+.+++|||++..-..+..+.+..|....+.... ...+.+|..+.++++
T Consensus 361 l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~-------------------------------~~ryslp~~l~~~~v 409 (620)
T KOG0350|consen 361 LWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPL-------------------------------IGRYSLPSSLSHRLV 409 (620)
T ss_pred hHhhhcchhhhcChHHHhhhhcCCCceEEeeccc-------------------------------ceeeecChhhhhcee
Confidence 5689999999999999999999999666554321 124789999999999
Q ss_pred EecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhh-hccCCCCCCChhHHHhhhcCcceEeccCCCChHH
Q 007774 296 KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS-EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (590)
Q Consensus 296 ~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~ 374 (590)
.+....+...+..++... ...++|+|+++.+++..++..|. .+. -....+..+.|.++.+.
T Consensus 410 v~~~~~kpl~~~~lI~~~----k~~r~lcf~~S~~sa~Rl~~~L~v~~~--------------~~~~~~s~~t~~l~~k~ 471 (620)
T KOG0350|consen 410 VTEPKFKPLAVYALITSN----KLNRTLCFVNSVSSANRLAHVLKVEFC--------------SDNFKVSEFTGQLNGKR 471 (620)
T ss_pred ecccccchHhHHHHHHHh----hcceEEEEecchHHHHHHHHHHHHHhc--------------cccchhhhhhhhhhHHH
Confidence 999999999999998873 46799999999999999999987 331 12566777999999999
Q ss_pred HHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchH-HHHHHHH
Q 007774 375 RRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMD-YLQDLEK 453 (590)
Q Consensus 375 R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~-~~~~l~~ 453 (590)
|.+.++.|..|++.||||+|+++||+|+.+|+.||+||+|.+...|+||+|||||+|+.|.|+.++..+|.. |.+.|++
T Consensus 472 r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 472 RYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred HHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997755 5555554
Q ss_pred c
Q 007774 454 H 454 (590)
Q Consensus 454 ~ 454 (590)
.
T Consensus 552 ~ 552 (620)
T KOG0350|consen 552 T 552 (620)
T ss_pred h
Confidence 3
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.4e-57 Score=477.23 Aligned_cols=366 Identities=28% Similarity=0.482 Sum_probs=311.0
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|++|+|++.+.+.| ..+||..||++|.++|+.++.|+|+++.||||||||++|++|+++.+... ..+.++|
T Consensus 28 ~~~~~l~l~~~~~~~l-~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~~l 100 (401)
T PTZ00424 28 DSFDALKLNEDLLRGI-YSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQAL 100 (401)
T ss_pred CCHhhCCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCceEE
Confidence 6899999999999999 46899999999999999999999999999999999999999999887431 2467899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
||+||++|+.|+.+.+..+.... .......+||.....+...+..+++|+|+||+++.+.+.. ..+.++++++||+||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDE 178 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDE 178 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEec
Confidence 99999999999999999887643 3445667788877777778888899999999999998876 445678999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||++++.+|...+..++..++. ..|++++|||+++.+..+....+.+|..+.+....
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-------- 235 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPP---------------DVQVALFSATMPNEILELTTKFMRDPKRILVKKDE-------- 235 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCC---------------CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC--------
Confidence 9999999999999999988864 78999999999998888888788777665543321
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecC-CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
.....+.+++..++. ..+...+..++.. ....++||||+|++.++.++
T Consensus 236 ---------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivF~~t~~~~~~l~ 284 (401)
T PTZ00424 236 ---------------------------LTLEGIRQFYVAVEKEEWKFDTLCDLYET----LTITQAIIYCNTRRKVDYLT 284 (401)
T ss_pred ---------------------------cccCCceEEEEecChHHHHHHHHHHHHHh----cCCCeEEEEecCcHHHHHHH
Confidence 112344555555543 2344555554443 33578999999999999999
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s 416 (590)
+.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+
T Consensus 285 ~~l~~~-----------------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s 347 (401)
T PTZ00424 285 KKMHER-----------------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPAS 347 (401)
T ss_pred HHHHHC-----------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCC
Confidence 999775 678899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
...|+||+||+||.|+.|.+++|+.+.+..++..+++. +..+++++.
T Consensus 348 ~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 348 PENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred HHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 99999999999999999999999999999999998776 666666544
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-58 Score=491.95 Aligned_cols=365 Identities=35% Similarity=0.567 Sum_probs=330.2
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
-.+|.+.|++..++..+ ++|||..||+||.+|||.|+.|+|||..|.||||||++|++|++.++..+. ....++|+-+
T Consensus 364 v~sW~q~gl~~~il~tl-kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr-~~~~gdGPi~ 441 (997)
T KOG0334|consen 364 VTSWTQCGLSSKILETL-KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR-PLEEGDGPIA 441 (997)
T ss_pred cchHhhCCchHHHHHHH-HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC-ChhhCCCceE
Confidence 46899999999999999 689999999999999999999999999999999999999999997766543 3345679999
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc--CCCCCCceeEEE
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT--SSFLHTNLRWII 174 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~--~~~~~~~l~~lV 174 (590)
||++||||||.|+++++..|+.. ..+.+.+++||.....+.+.++.+..|+||||||+++.+..+ ...++..+.+||
T Consensus 442 li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999999999999996 567788899999999999999999999999999999988653 233555666999
Q ss_pred EechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCc
Q 007774 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (590)
Q Consensus 175 lDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~ 254 (590)
+||||+|.++||+..+..|+.+++. .+|+++||||+|..+..++...+..|+.+.+....
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrp---------------drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s----- 580 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRP---------------DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS----- 580 (997)
T ss_pred echhhhhheeccCcccchHHhhcch---------------hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-----
Confidence 9999999999999999999999975 89999999999999999999999999988777543
Q ss_pred ccccccCccccchhhccCCCccccccccccCCcccceeEEEEec-CCChHHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
.+...+.+.+.+++ ...|+..|.++|.... ...++||||..++.|+
T Consensus 581 ------------------------------vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~---e~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 581 ------------------------------VVCKEVTQVVRVCAIENEKFLKLLELLGERY---EDGKTIIFVDKQEKAD 627 (997)
T ss_pred ------------------------------eEeccceEEEEEecCchHHHHHHHHHHHHHh---hcCCEEEEEcCchHHH
Confidence 34567788888998 8899999999999875 3789999999999999
Q ss_pred HHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecC
Q 007774 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (590)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~ 413 (590)
.+..-|.+. ++.+..|||+.++.+|..+++.|+++.+.+||||++++||+|++.+.+|||||+
T Consensus 628 ~l~~~L~~a-----------------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~ 690 (997)
T KOG0334|consen 628 ALLRDLQKA-----------------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF 690 (997)
T ss_pred HHHHHHHhc-----------------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEccc
Confidence 999999877 777777999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 414 p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
|...++|+||+|||||+|+.|.|++|+.|.+..|...|.+.
T Consensus 691 pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~a 731 (997)
T KOG0334|consen 691 PNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKA 731 (997)
T ss_pred chhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHH
Confidence 99999999999999999999999999999888777666553
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-57 Score=437.46 Aligned_cols=363 Identities=31% Similarity=0.515 Sum_probs=327.6
Q ss_pred CccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEE
Q 007774 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (590)
Q Consensus 19 ~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~li 98 (590)
+|++++|.+++++.++ .+||++|+.+|++||+.+..|.|+.+++++|+|||.+|.+++++.+.- ......||+
T Consensus 27 sfddm~L~e~LLrgiy-~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qali 99 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIY-AYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQALI 99 (397)
T ss_pred hhhhcCCCHHHHhHHH-hhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHHHH
Confidence 8999999999999996 689999999999999999999999999999999999999999998732 134577999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHh-cCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL-RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
++||||||.|++.+...+.... ...+..++||.+...+...+ ..+++|+|+||||+++.+... .+....+++.|+||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDE 177 (397)
T ss_pred hcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecc
Confidence 9999999999999888887743 45556677777776554444 456999999999999999875 77778899999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||.++..||.+.+..|++.+|. ..|++++|||+|.++..+.+.++++|+.+.+....
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~---------------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-------- 234 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPS---------------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE-------- 234 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCc---------------chhheeecccCcHHHHHHHHHhccCceEEEecchh--------
Confidence 9999999999999999999997 78999999999999999999999999999887664
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
...+.+.|+|+.+..+.|+..|+.+... -...+|||||.+.+..+..
T Consensus 235 ---------------------------ltl~gikq~~i~v~k~~k~~~l~dl~~~------~~q~~if~nt~r~v~~l~~ 281 (397)
T KOG0327|consen 235 ---------------------------LTLEGIKQFYINVEKEEKLDTLCDLYRR------VTQAVIFCNTRRKVDNLTD 281 (397)
T ss_pred ---------------------------hhhhheeeeeeeccccccccHHHHHHHh------hhcceEEecchhhHHHHHH
Confidence 2256788999999988899999988873 3688999999999999999
Q ss_pred hhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCCh
Q 007774 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (590)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~ 417 (590)
.|.+. +..+..+||+|.+.+|..++.+|+.|..+|||+||.++||+|+..++.||+||.|...
T Consensus 282 ~L~~~-----------------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~ 344 (397)
T KOG0327|consen 282 KLRAH-----------------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARK 344 (397)
T ss_pred HHhhC-----------------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccch
Confidence 99766 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 418 TEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 418 ~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
+.|+||+||+||.|++|.++.|+..++...++.+++. +.+++++|.
T Consensus 345 ~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 345 ENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred hhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 9999999999999999999999999999999999886 888888764
No 33
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-57 Score=431.00 Aligned_cols=371 Identities=25% Similarity=0.450 Sum_probs=318.0
Q ss_pred cccccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCC
Q 007774 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSP 86 (590)
Q Consensus 9 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~ 86 (590)
+.++++++..+|++|+|.|++++.|. .|+|.+|+.+|+.++|.++.. ++++.+++.|+|||.||.+.|+.+....
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly-~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-- 157 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLY-AMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-- 157 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHH-HhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--
Confidence 46889999999999999999999997 599999999999999999974 7999999999999999999999876432
Q ss_pred CCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCC
Q 007774 87 RIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFL 166 (590)
Q Consensus 87 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~ 166 (590)
..-+.++.|+||||||.|+-+++.++++.. .+...+.+.|.....- -.-..+|+|+|||.+.+++..-+.+.
T Consensus 158 ----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id 229 (477)
T KOG0332|consen 158 ----VVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCID 229 (477)
T ss_pred ----ccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhC
Confidence 234779999999999999999999999844 5666777666521110 00124799999999999999878888
Q ss_pred CCceeEEEEechhhhhhc-CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEec
Q 007774 167 HTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (590)
Q Consensus 167 ~~~l~~lVlDEah~ll~~-gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 245 (590)
+..++++|+||||.|++. ||.+.-..|...+|+ ..|.++||||..+.+..++.....+|..+.+
T Consensus 230 ~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~---------------~~QllLFSATf~e~V~~Fa~kivpn~n~i~L 294 (477)
T KOG0332|consen 230 LEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR---------------NQQLLLFSATFVEKVAAFALKIVPNANVIIL 294 (477)
T ss_pred hhhceEEEecchhhhhhcccccccchhhhhhcCC---------------cceEEeeechhHHHHHHHHHHhcCCCceeee
Confidence 899999999999999874 899999999999985 7999999999999999999999998887777
Q ss_pred CCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecC-CChHHHHHHHHHhhhcccCCceEEE
Q 007774 246 DEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVV 324 (590)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~k~iV 324 (590)
..+. .....+.|+|+.|+. ..|..+|..+-... .-+..||
T Consensus 295 k~ee-----------------------------------l~L~~IkQlyv~C~~~~~K~~~l~~lyg~~----tigqsiI 335 (477)
T KOG0332|consen 295 KREE-----------------------------------LALDNIKQLYVLCACRDDKYQALVNLYGLL----TIGQSII 335 (477)
T ss_pred ehhh-----------------------------------ccccchhhheeeccchhhHHHHHHHHHhhh----hhhheEE
Confidence 6553 234568899999986 47888888743332 2478999
Q ss_pred EecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCC
Q 007774 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (590)
Q Consensus 325 F~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~ 404 (590)
||.|++++.+++..+.+. |..+..+||+|...+|..++++|+.|...|||+|+|.+||||++.
T Consensus 336 Fc~tk~ta~~l~~~m~~~-----------------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~q 398 (477)
T KOG0332|consen 336 FCHTKATAMWLYEEMRAE-----------------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQ 398 (477)
T ss_pred EEeehhhHHHHHHHHHhc-----------------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccce
Confidence 999999999999999887 888999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCC------ChhHHHhhhccccCCCCCccEEEEeCc-cchHHHHHHHHc-CCCCccc
Q 007774 405 VKCIIQYDSAG------EATEYVHRVGRTARLGERGDSLLFLQP-VEMDYLQDLEKH-GVSLTEY 461 (590)
Q Consensus 405 v~~VI~~d~p~------s~~~yiqr~GRt~R~g~~g~~i~~l~~-~e~~~~~~l~~~-~~~~~~~ 461 (590)
|++|||||+|. +++.|+||+|||||.|+.|.++.|+.. +....++.++++ +..+.++
T Consensus 399 Vs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 399 VSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRL 463 (477)
T ss_pred EEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceec
Confidence 99999999996 799999999999999999999999887 456778788776 4444443
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.2e-52 Score=464.12 Aligned_cols=374 Identities=19% Similarity=0.274 Sum_probs=271.0
Q ss_pred CCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 24 ~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
.|++.+.++|. ++||++||++|.++||.+++|+|+++.+|||||||+||++|+++.+.. ..+.++|||+|||
T Consensus 20 ~l~~~l~~~L~-~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAALE-AAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHHH-HcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChH
Confidence 37999999994 679999999999999999999999999999999999999999999865 2357899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhc-cCC--CCCCceeEEEEechhh
Q 007774 104 ELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH-TSS--FLHTNLRWIIFDEADR 180 (590)
Q Consensus 104 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~--~~~~~l~~lVlDEah~ 180 (590)
|||.|+.+.++.+. ...+.+..+.|+ ....+...++.+++|+|+||++|...+.. ... ..++++++||+||||.
T Consensus 92 aLa~q~~~~l~~l~--~~~i~v~~~~Gd-t~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 92 ALAADQLRAVRELT--LRGVRPATYDGD-TPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEEeCC-CCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 99999999999986 223455555554 44556667778899999999999753322 111 1367999999999999
Q ss_pred hhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccccccc
Q 007774 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFG 260 (590)
Q Consensus 181 ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~ 260 (590)
+.+. |+..+..++..+...+. ..+.++|++++|||+++..+ ++...+..|..+ ++....+... ....
T Consensus 169 ~~g~-fg~~~~~il~rL~ri~~--------~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~--~~~~ 235 (742)
T TIGR03817 169 YRGV-FGSHVALVLRRLRRLCA--------RYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGA--RTVA 235 (742)
T ss_pred ccCc-cHHHHHHHHHHHHHHHH--------hcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCc--eEEE
Confidence 9774 88888888877754210 01236899999999998766 455555666543 2222100000 0000
Q ss_pred CccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhh
Q 007774 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (590)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~ 340 (590)
.+..... ........+ .. ......+...+..++. .+.++||||+|++.++.++..+.
T Consensus 236 ~~~p~~~-----------~~~~~~~~~--~r----~~~~~~~~~~l~~l~~------~~~~~IVF~~sr~~ae~l~~~l~ 292 (742)
T TIGR03817 236 LWEPPLT-----------ELTGENGAP--VR----RSASAEAADLLADLVA------EGARTLTFVRSRRGAELVAAIAR 292 (742)
T ss_pred EecCCcc-----------ccccccccc--cc----cchHHHHHHHHHHHHH------CCCCEEEEcCCHHHHHHHHHHHH
Confidence 0000000 000000000 00 0000123333333333 25799999999999999999887
Q ss_pred hccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHH
Q 007774 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420 (590)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~y 420 (590)
....... ...+..+..+||++++.+|.+++++|++|+..+|||||++++|||+|++++||+||.|.+..+|
T Consensus 293 ~~l~~~~---------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y 363 (742)
T TIGR03817 293 RLLGEVD---------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASL 363 (742)
T ss_pred HHHHhhc---------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHH
Confidence 6421100 0114567889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCCCCccEEEEeC--ccchHHHHHHHH
Q 007774 421 VHRVGRTARLGERGDSLLFLQ--PVEMDYLQDLEK 453 (590)
Q Consensus 421 iqr~GRt~R~g~~g~~i~~l~--~~e~~~~~~l~~ 453 (590)
+||+|||||.|+.|.++++.. |.|..++...++
T Consensus 364 ~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~ 398 (742)
T TIGR03817 364 WQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEA 398 (742)
T ss_pred HHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHH
Confidence 999999999999999999986 456666665543
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.1e-54 Score=432.65 Aligned_cols=347 Identities=27% Similarity=0.428 Sum_probs=310.5
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
..|++|-|...++..|. +.+|..||++|..|||.++.+-|+||+|..|+|||++|.+.+++.|.. +.....++
T Consensus 25 ~~fe~l~l~r~vl~glr-rn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~~q~~ 97 (980)
T KOG4284|consen 25 PGFEQLALWREVLLGLR-RNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSHIQKV 97 (980)
T ss_pred CCHHHHHHHHHHHHHHH-hhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCcceeE
Confidence 48999999999999995 569999999999999999999999999999999999999999998754 34568899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
||+||||+|.|+.+++..++..+....+.+++||+.....+.+++ .++|+||||||+.+++.. ..++.+.++++||||
T Consensus 98 Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 98 IVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDE 175 (980)
T ss_pred EEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHh-cCCCccceeEEEecc
Confidence 999999999999999999999899999999999998887777764 467999999999998876 678899999999999
Q ss_pred hhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 178 ADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 178 ah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
||.|++ ..|..++..|++.+|+ .+|++.||||-|.++.++...+|++|.++......
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~---------------~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d------- 233 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQ---------------IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD------- 233 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcch---------------hheeeEEeccCchhHHHHHHHHhcccceeecccCC-------
Confidence 999998 5799999999999997 79999999999999999999999999999887653
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCC--------hHHHHHHHHHhhhcccCCceEEEEecc
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS--------RLAVLLSILKHLFDTEVSQKLVVFFST 328 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------k~~~L~~~l~~~~~~~~~~k~iVF~~t 328 (590)
...-.+.|+++..+... |+..|-.+++. .+-..+||||+.
T Consensus 234 ----------------------------~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~----ipy~QAlVF~~~ 281 (980)
T KOG4284|consen 234 ----------------------------VQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKS----IPYVQALVFCDQ 281 (980)
T ss_pred ----------------------------ceeechhheeeeccCCcchHHHHHHHHHHHHHHHhh----CchHHHHhhhhh
Confidence 12345677777666432 44444444444 456789999999
Q ss_pred hhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEE
Q 007774 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI 408 (590)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~V 408 (590)
...|+-++.+|... |+.+-++.|.|+|++|..+++.++.-..+|||+||..+||||-|+|++|
T Consensus 282 ~sra~~~a~~L~ss-----------------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLV 344 (980)
T KOG4284|consen 282 ISRAEPIATHLKSS-----------------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLV 344 (980)
T ss_pred hhhhhHHHHHhhcc-----------------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceE
Confidence 99999999999887 8889999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 409 IQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 409 I~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
||.|+|.+.++|.|||||+||.|..|.++.|+...+
T Consensus 345 VNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 345 VNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred EecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 999999999999999999999999999999998754
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-52 Score=418.52 Aligned_cols=363 Identities=28% Similarity=0.426 Sum_probs=300.2
Q ss_pred CccC----CCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 19 SFSS----LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 19 ~f~~----l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
+|++ ...++.++..+. ..+|..|||+|.+|||.++.++|++.+||||||||++|.+|++++|..... .....|-
T Consensus 133 ~f~~lt~~~~~~~~ll~nl~-~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~gl 210 (593)
T KOG0344|consen 133 SFSDLTYDYSMNKRLLENLQ-ELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVGL 210 (593)
T ss_pred cccccchhhhhcHHHHHhHh-hCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccce
Confidence 5665 347889999995 569999999999999999999999999999999999999999999976442 1124688
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHH--hhcCCcceEEEEcC-CchHHHHHHhcCCCcEEEECChHHHHHHhccC-CCCCCce
Q 007774 95 FALVLVPTRELCLQVYEILHKLL--HRFHWIVPGYVMGG-ENRSKEKARLRKGISILVATPGRLLDHLKHTS-SFLHTNL 170 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~--~~~~~~~~~~~~gg-~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~-~~~~~~l 170 (590)
+++|+.||||||.|++.++.++. ....... ..+... .............++|+|+||-++..++.... ...+..+
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a-~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V 289 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGTSLRA-AQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKV 289 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCCchhh-hhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhhee
Confidence 99999999999999999999986 2111111 111111 11111111222347899999999999998743 3578899
Q ss_pred eEEEEechhhhhhc-CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCC
Q 007774 171 RWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249 (590)
Q Consensus 171 ~~lVlDEah~ll~~-gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~ 249 (590)
.++|+||||++.+. +|..++..|+..+... ...+-+||||++..+++++...+.++..+.+....
T Consensus 290 ~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~--------------~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~ 355 (593)
T KOG0344|consen 290 EWLVVDEADLLFEPEFFVEQLADIYSACQSP--------------DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRN 355 (593)
T ss_pred eeEeechHHhhhChhhHHHHHHHHHHHhcCc--------------chhhhhhhccccHHHHHHHHHhhccceeEEEecch
Confidence 99999999999999 9999999999998753 67788999999999999999999999888776553
Q ss_pred CCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEec-CCChHHHHHHHHHhhhcccCCceEEEEecc
Q 007774 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFST 328 (590)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t 328 (590)
.....+.|..+.|. ...|+.++..++...+ +.+++||+.+
T Consensus 356 -----------------------------------sa~~~V~QelvF~gse~~K~lA~rq~v~~g~----~PP~lIfVQs 396 (593)
T KOG0344|consen 356 -----------------------------------SANETVDQELVFCGSEKGKLLALRQLVASGF----KPPVLIFVQS 396 (593)
T ss_pred -----------------------------------hHhhhhhhhheeeecchhHHHHHHHHHhccC----CCCeEEEEec
Confidence 11234555555554 5689999999888754 6799999999
Q ss_pred hhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEE
Q 007774 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI 408 (590)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~V 408 (590)
.+.+..+++.|.. ++++.+..+||..++.+|.+++++|+.|++.|||||++++||+||.+|+.|
T Consensus 397 ~eRak~L~~~L~~----------------~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~V 460 (593)
T KOG0344|consen 397 KERAKQLFEELEI----------------YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLV 460 (593)
T ss_pred HHHHHHHHHHhhh----------------ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceE
Confidence 9999999998862 348899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHH
Q 007774 409 IQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (590)
Q Consensus 409 I~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~ 453 (590)
|+||.|.+...|+||+|||||+|+.|.++.|++..+..+++-+.+
T Consensus 461 InyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 461 INYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred EecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999999999999999999999999999888876654
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.8e-50 Score=424.80 Aligned_cols=329 Identities=20% Similarity=0.299 Sum_probs=253.1
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHH
Q 007774 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (590)
Q Consensus 33 l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 112 (590)
|++.|||..|||+|+++|+.++.|+|+++.+|||||||++|++|++.. +..+|||+||++|+.|+.+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHH
Confidence 567799999999999999999999999999999999999999998752 34589999999999999988
Q ss_pred HHHHHhhcCCcceEEEEcCCchHHHH---HHhc-CCCcEEEECChHHHHHHhccCCC-CCCceeEEEEechhhhhhcC--
Q 007774 113 LHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILELG-- 185 (590)
Q Consensus 113 ~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah~ll~~g-- 185 (590)
+..+ .+....+.++....... ..+. ..++|+++||+++.........+ ...++++||+||||++.++|
T Consensus 71 l~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 71 LKAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 8753 23445555554433221 2223 34899999999975422111111 34689999999999999987
Q ss_pred chHHHHHH---HHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHH--hhcCCCEEEecCCCCCCCCccccccc
Q 007774 186 FGKEIEEI---LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK--ISLETPVLIGLDEKKLPEDKSHVRFG 260 (590)
Q Consensus 186 f~~~l~~i---l~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~--~~l~~p~~i~~~~~~~~~~~~~~~~~ 260 (590)
|...+..+ ...+| ..+++++|||+++.+..... +.+.+|..+......
T Consensus 146 fr~~~~~l~~l~~~~~----------------~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r----------- 198 (470)
T TIGR00614 146 FRPDYKALGSLKQKFP----------------NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR----------- 198 (470)
T ss_pred cHHHHHHHHHHHHHcC----------------CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC-----------
Confidence 55655544 33343 57899999999987654333 334555544322110
Q ss_pred CccccchhhccCCCccccccccccCCcccceeEEEEecC-CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhh
Q 007774 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (590)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l 339 (590)
.++ .+...+. ...+..+..++... ..+..+||||+|++.++.++..|
T Consensus 199 ---------------------------~nl--~~~v~~~~~~~~~~l~~~l~~~---~~~~~~IIF~~s~~~~e~la~~L 246 (470)
T TIGR00614 199 ---------------------------PNL--YYEVRRKTPKILEDLLRFIRKE---FKGKSGIIYCPSRKKSEQVTASL 246 (470)
T ss_pred ---------------------------CCc--EEEEEeCCccHHHHHHHHHHHh---cCCCceEEEECcHHHHHHHHHHH
Confidence 011 1122222 23455566666532 24567799999999999999999
Q ss_pred hhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhH
Q 007774 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATE 419 (590)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~ 419 (590)
... ++.+..+||+|++.+|..+++.|++|+..|||||+++++|||+|+|++||+|++|.+++.
T Consensus 247 ~~~-----------------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~ 309 (470)
T TIGR00614 247 QNL-----------------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMES 309 (470)
T ss_pred Hhc-----------------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHH
Confidence 876 778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 420 YVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 420 yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
|+||+||+||.|..|.+++|+.+.|...++.+...
T Consensus 310 y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 310 YYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred HHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 99999999999999999999999998888777543
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.7e-49 Score=432.37 Aligned_cols=343 Identities=20% Similarity=0.249 Sum_probs=263.8
Q ss_pred CCcc--CCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 007774 18 CSFS--SLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (590)
Q Consensus 18 ~~f~--~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~ 95 (590)
..|+ .++.+..+...+...||+..++|+|.++|+.++.|+|+++.+|||+|||+||.+|++.. +..
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~Gi 502 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGI 502 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCc
Confidence 3466 45677788888888899999999999999999999999999999999999999999853 246
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhc------CCCcEEEECChHHHH--H-HhccCCC-
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR------KGISILVATPGRLLD--H-LKHTSSF- 165 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~IlV~Tp~rl~~--~-l~~~~~~- 165 (590)
+|||+|+++|+.++...+... .+....+.++.........++ ..++||++||++|.. . +.....+
T Consensus 503 TLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~ 577 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLN 577 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhh
Confidence 999999999998655554432 456677888877665544332 458999999999852 1 2111111
Q ss_pred CCCceeEEEEechhhhhhcC--chHHHHHH---HHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhh--cC
Q 007774 166 LHTNLRWIIFDEADRILELG--FGKEIEEI---LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--LE 238 (590)
Q Consensus 166 ~~~~l~~lVlDEah~ll~~g--f~~~l~~i---l~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~--l~ 238 (590)
....+.+|||||||++++|| |...+..+ ...++ ..+++++|||++..+....... +.
T Consensus 578 ~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp----------------~vPilALTATAT~~V~eDI~~~L~l~ 641 (1195)
T PLN03137 578 SRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP----------------NIPVLALTATATASVKEDVVQALGLV 641 (1195)
T ss_pred hccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC----------------CCCeEEEEecCCHHHHHHHHHHcCCC
Confidence 12458899999999999998 66666653 23333 5788999999998877644333 33
Q ss_pred CCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCCh-HHHHHHHHHhhhccc
Q 007774 239 TPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSR-LAVLLSILKHLFDTE 317 (590)
Q Consensus 239 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k-~~~L~~~l~~~~~~~ 317 (590)
++..+..... -| + .+|.+++...+ +..+..++... .
T Consensus 642 ~~~vfr~Sf~-------------------------------------Rp-N--L~y~Vv~k~kk~le~L~~~I~~~---~ 678 (1195)
T PLN03137 642 NCVVFRQSFN-------------------------------------RP-N--LWYSVVPKTKKCLEDIDKFIKEN---H 678 (1195)
T ss_pred CcEEeecccC-------------------------------------cc-c--eEEEEeccchhHHHHHHHHHHhc---c
Confidence 4433221110 01 1 23333333322 34455555432 2
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccc
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAA 397 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~ 397 (590)
.+...||||+|+..++.+++.|... ++.+..+||+|++.+|..++++|.+|+..|||||++++
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~-----------------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEF-----------------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHC-----------------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 3568999999999999999999876 78899999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHH
Q 007774 398 RGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (590)
Q Consensus 398 rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~ 453 (590)
+|||+|+|++|||||+|.+++.|+||+|||||.|..|.|++|+.+.|...+..+..
T Consensus 742 MGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988776666654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8.7e-48 Score=419.81 Aligned_cols=337 Identities=22% Similarity=0.326 Sum_probs=260.7
Q ss_pred CCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc
Q 007774 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (590)
Q Consensus 23 l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt 102 (590)
+++++.....|++.|||..|+|+|+++|+.++.|+|+++.+|||||||++|++|++.. +..+|||+|+
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl 74 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPL 74 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecH
Confidence 3456666777877799999999999999999999999999999999999999999853 2358999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhcC-CCcEEEECChHHHHHHhccCCCCCCceeEEEEech
Q 007774 103 RELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEA 178 (590)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEa 178 (590)
++|+.|+.+.+..+ .+....+.++....... ..+.. ..+++++||+++...... ..+...+++++|+|||
T Consensus 75 ~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEa 148 (607)
T PRK11057 75 ISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEA 148 (607)
T ss_pred HHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCc
Confidence 99999999988764 24455555555544332 22333 478999999998632111 1123347899999999
Q ss_pred hhhhhcC--chHHHHHH---HHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHH--HhhcCCCEEEecCCCCCC
Q 007774 179 DRILELG--FGKEIEEI---LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA--KISLETPVLIGLDEKKLP 251 (590)
Q Consensus 179 h~ll~~g--f~~~l~~i---l~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~--~~~l~~p~~i~~~~~~~~ 251 (590)
|++.++| |...+..+ ...+| ..+++++|||++..+.... .+.+.+|.........
T Consensus 149 H~i~~~G~~fr~~y~~L~~l~~~~p----------------~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r-- 210 (607)
T PRK11057 149 HCISQWGHDFRPEYAALGQLRQRFP----------------TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR-- 210 (607)
T ss_pred cccccccCcccHHHHHHHHHHHhCC----------------CCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCC--
Confidence 9999987 55554443 33333 5789999999998765422 2344555543321110
Q ss_pred CCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhh
Q 007774 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~ 331 (590)
| + ..|..+....++..+..++.. ..+.++||||+|++.
T Consensus 211 -----------------------------------~-n--l~~~v~~~~~~~~~l~~~l~~----~~~~~~IIFc~tr~~ 248 (607)
T PRK11057 211 -----------------------------------P-N--IRYTLVEKFKPLDQLMRYVQE----QRGKSGIIYCNSRAK 248 (607)
T ss_pred -----------------------------------C-c--ceeeeeeccchHHHHHHHHHh----cCCCCEEEEECcHHH
Confidence 0 1 122233333455556666554 346799999999999
Q ss_pred HHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEe
Q 007774 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (590)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~ 411 (590)
++.++..|+.. ++.+..+||+|++.+|.++++.|++|+..|||||+++++|||+|+|++||+|
T Consensus 249 ~e~la~~L~~~-----------------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 249 VEDTAARLQSR-----------------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred HHHHHHHHHhC-----------------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEe
Confidence 99999999876 7789999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 412 d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
|+|.|.+.|+||+||+||.|..|.+++|+.+.|..+++.+...
T Consensus 312 d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 312 DIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred CCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998877766543
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.4e-46 Score=423.98 Aligned_cols=360 Identities=21% Similarity=0.259 Sum_probs=259.1
Q ss_pred CCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 25 l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
|++.+.+++.+ +|..|||+|.++||.+++|+|++++||||||||++|++|+++.+...........+.++|||+|||+
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 67888888854 7889999999999999999999999999999999999999998875332212235788999999999
Q ss_pred HHHHHHHHHHHHHh-----------hcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCC-CCCCceeE
Q 007774 105 LCLQVYEILHKLLH-----------RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-FLHTNLRW 172 (590)
Q Consensus 105 La~Q~~~~~~~~~~-----------~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~~~~~l~~ 172 (590)
|+.|+++.+...+. .++.+.+...+|+.........+.+.++|+|+||++|..++..... -.+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99999987664321 1224556777787776666666777899999999999887754321 14679999
Q ss_pred EEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcC-------CCEEEec
Q 007774 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-------TPVLIGL 245 (590)
Q Consensus 173 lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~-------~p~~i~~ 245 (590)
||+||||.+.+..++..+...+..+.... +...|.+++|||+++ .+.++.+... .+..+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-----------~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv- 242 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELA-----------GGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIV- 242 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhc-----------CCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEE-
Confidence 99999999999888888887777775421 126899999999976 3344433221 111111
Q ss_pred CCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEE
Q 007774 246 DEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVF 325 (590)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF 325 (590)
....... .... ...|. ..............+...+..... .+.++|||
T Consensus 243 ~~~~~k~---------~~i~------------------v~~p~---~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF 290 (876)
T PRK13767 243 DARFVKP---------FDIK------------------VISPV---DDLIHTPAEEISEALYETLHELIK--EHRTTLIF 290 (876)
T ss_pred ccCCCcc---------ceEE------------------EeccC---ccccccccchhHHHHHHHHHHHHh--cCCCEEEE
Confidence 0000000 0000 00000 000001111222333444444332 35789999
Q ss_pred ecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCC
Q 007774 326 FSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV 405 (590)
Q Consensus 326 ~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v 405 (590)
|||+..++.++..|...... .+.+..+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|
T Consensus 291 ~nTr~~ae~la~~L~~~~~~-----------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~V 359 (876)
T PRK13767 291 TNTRSGAERVLYNLRKRFPE-----------EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYI 359 (876)
T ss_pred eCCHHHHHHHHHHHHHhchh-----------hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCC
Confidence 99999999999998764210 0124678999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCChhHHHhhhccccCC-CCCccEEEEeCc
Q 007774 406 KCIIQYDSAGEATEYVHRVGRTARL-GERGDSLLFLQP 442 (590)
Q Consensus 406 ~~VI~~d~p~s~~~yiqr~GRt~R~-g~~g~~i~~l~~ 442 (590)
++||+|+.|.++..|+||+||+||. |..+.++++...
T Consensus 360 d~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 360 DLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred cEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999987 444555555443
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.3e-46 Score=405.38 Aligned_cols=330 Identities=18% Similarity=0.180 Sum_probs=248.3
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhcCC-cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE-EEcCcHHHHH
Q 007774 30 CDQLRERLGFEAPTKVQAQAIPVILSGR-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL-VLVPTRELCL 107 (590)
Q Consensus 30 ~~~l~~~~g~~~~t~~Q~~~i~~il~g~-dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l-il~PtreLa~ 107 (590)
...+.+-+||+ |||||.++||.++.|+ ++++++|||||||.+|.++++..... ...++.| +++|||||+.
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~-------~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIG-------AKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccccc-------ccccceEEEeCchHHHHH
Confidence 34444446999 9999999999999998 68889999999999776555532111 2234455 5779999999
Q ss_pred HHHHHHHHHHhhcC----------------------CcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCC
Q 007774 108 QVYEILHKLLHRFH----------------------WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF 165 (590)
Q Consensus 108 Q~~~~~~~~~~~~~----------------------~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~ 165 (590)
|+++.+.++.+.+. .+.+..++||.....++..+..+++|||||+ |++.+...+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~ 152 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLF 152 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccc
Confidence 99999999988552 2667889999999999999999999999995 555442211
Q ss_pred ---------------CCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHH
Q 007774 166 ---------------LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVN 230 (590)
Q Consensus 166 ---------------~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~ 230 (590)
.++++.+||||||| ++++|...+..|+..+.... ....+|+++||||++..+.
T Consensus 153 ~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~----------~~rprQtLLFSAT~p~ei~ 220 (844)
T TIGR02621 153 SGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPP----------DFLPLRVVELTATSRTDGP 220 (844)
T ss_pred cccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCc----------ccccceEEEEecCCCccHH
Confidence 25789999999999 78999999999999762100 0013799999999998888
Q ss_pred HHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHH
Q 007774 231 HLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSIL 310 (590)
Q Consensus 231 ~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l 310 (590)
.+....+.+|..+.+.... .....+.++ +.++.+.++..+...+
T Consensus 221 ~l~~~~~~~p~~i~V~~~~-----------------------------------l~a~ki~q~-v~v~~e~Kl~~lv~~L 264 (844)
T TIGR02621 221 DRTTLLSAEDYKHPVLKKR-----------------------------------LAAKKIVKL-VPPSDEKFLSTMVKEL 264 (844)
T ss_pred HHHHHHccCCceeeccccc-----------------------------------ccccceEEE-EecChHHHHHHHHHHH
Confidence 8877777666554442221 111223332 3344445555555544
Q ss_pred HhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHH-----HHHHHhhc-
Q 007774 311 KHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR-----TTFGAFKT- 384 (590)
Q Consensus 311 ~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~-----~~~~~F~~- 384 (590)
..... ..+.++||||||++.++.+++.|... ++ ..+||+|++.+|. +++++|++
T Consensus 265 ~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~-----------------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~ 324 (844)
T TIGR02621 265 NLLMK-DSGGAILVFCRTVKHVRKVFAKLPKE-----------------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQ 324 (844)
T ss_pred HHHHh-hCCCcEEEEECCHHHHHHHHHHHHhc-----------------CC--eEeeCCCCHHHHhhHHHHHHHHHHhcc
Confidence 43332 34578999999999999999999865 33 7899999999999 88999987
Q ss_pred ---cC-------ccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCc-cEEEEeCc
Q 007774 385 ---EK-------KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERG-DSLLFLQP 442 (590)
Q Consensus 385 ---~~-------~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g-~~i~~l~~ 442 (590)
++ ..||||||++++||||+. ++||++..| .+.|+||+||+||.|+.| ..+.++.+
T Consensus 325 ~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 325 MLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 44 679999999999999986 889988877 699999999999999854 43555543
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=8.3e-46 Score=405.67 Aligned_cols=332 Identities=20% Similarity=0.305 Sum_probs=257.6
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 31 ~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
..|++.|||+.++|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +..++||+|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHH
Confidence 45767799999999999999999999999999999999999999998742 235899999999999999
Q ss_pred HHHHHHHhhcCCcceEEEEcCCchHHHHH---H-hcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcC-
Q 007774 111 EILHKLLHRFHWIVPGYVMGGENRSKEKA---R-LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG- 185 (590)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~-l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g- 185 (590)
+.++.+ .+.+..+.++.+...... . .....+|+++||+++...... ..+...++++||+||||++.++|
T Consensus 71 ~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~ 144 (591)
T TIGR01389 71 DQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGH 144 (591)
T ss_pred HHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccC
Confidence 988874 244556666655443322 2 234589999999998642221 12334688999999999999876
Q ss_pred -chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhc--CCCEEEecCCCCCCCCcccccccCc
Q 007774 186 -FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL--ETPVLIGLDEKKLPEDKSHVRFGSL 262 (590)
Q Consensus 186 -f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l--~~p~~i~~~~~~~~~~~~~~~~~~~ 262 (590)
|...+..+....... +..+++++|||++..+.......+ .++..+.....
T Consensus 145 ~frp~y~~l~~l~~~~-------------~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~-------------- 197 (591)
T TIGR01389 145 DFRPEYQRLGSLAERF-------------PQVPRIALTATADAETRQDIRELLRLADANEFITSFD-------------- 197 (591)
T ss_pred ccHHHHHHHHHHHHhC-------------CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCC--------------
Confidence 666655554333211 034599999999987765443333 33332211100
Q ss_pred cccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhc
Q 007774 263 ESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (590)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~ 342 (590)
-| ...|.......+...+..++... .+.++||||+|++.++.+++.|...
T Consensus 198 -----------------------r~---nl~~~v~~~~~~~~~l~~~l~~~----~~~~~IIf~~sr~~~e~la~~L~~~ 247 (591)
T TIGR01389 198 -----------------------RP---NLRFSVVKKNNKQKFLLDYLKKH----RGQSGIIYASSRKKVEELAERLESQ 247 (591)
T ss_pred -----------------------CC---CcEEEEEeCCCHHHHHHHHHHhc----CCCCEEEEECcHHHHHHHHHHHHhC
Confidence 00 12333445556677777777653 3678999999999999999999876
Q ss_pred cCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHh
Q 007774 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422 (590)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiq 422 (590)
++.+..+||+|+..+|..+++.|.+|+..|||||+++++|||+|+|++||+||+|.|.+.|+|
T Consensus 248 -----------------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q 310 (591)
T TIGR01389 248 -----------------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQ 310 (591)
T ss_pred -----------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhh
Confidence 778899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 423 r~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
++||+||.|..|.+++|+.+.+...++.+...
T Consensus 311 ~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 311 EAGRAGRDGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred hhccccCCCCCceEEEecCHHHHHHHHHHHhc
Confidence 99999999999999999999888777766554
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.3e-45 Score=408.11 Aligned_cols=336 Identities=19% Similarity=0.255 Sum_probs=258.4
Q ss_pred CCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 24 ~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
+.+..+...+.+.++|+ ||++|.+||+.++.+ +|.+++|+||||||.+|+.|++..+.. +.+++
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvl 504 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVA 504 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEE
Confidence 34667778887889996 999999999999875 799999999999999999999988753 57899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH---HHHhcC-CCcEEEECChHHHHHHhccCCCCCCceeEE
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~l 173 (590)
|++||++||.|+++.+++++..++ +.+..++|+...... ...+.. .++|+||||..+ . ..+.++++++|
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~ll 577 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLL 577 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEE
Confidence 999999999999999999877543 556677776654333 234444 489999999432 2 34567899999
Q ss_pred EEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCC
Q 007774 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (590)
Q Consensus 174 VlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~ 253 (590)
|+||+|+ |+......+..++. ..|+++||||+.+....+....+.++..+......
T Consensus 578 VIDEahr-----fgv~~~~~L~~~~~---------------~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---- 633 (926)
T TIGR00580 578 IIDEEQR-----FGVKQKEKLKELRT---------------SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---- 633 (926)
T ss_pred Eeecccc-----cchhHHHHHHhcCC---------------CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC----
Confidence 9999999 45555666666653 68999999998776655555566666665443221
Q ss_pred cccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
.. .+..++... .. ..+...+...+ ..+++++|||++++.++
T Consensus 634 -------------------------------R~--~V~t~v~~~--~~--~~i~~~i~~el--~~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 634 -------------------------------RL--PVRTFVMEY--DP--ELVREAIRREL--LRGGQVFYVHNRIESIE 674 (926)
T ss_pred -------------------------------cc--ceEEEEEec--CH--HHHHHHHHHHH--HcCCeEEEEECCcHHHH
Confidence 00 122222211 11 22222232222 23679999999999999
Q ss_pred HHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecC
Q 007774 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (590)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~ 413 (590)
.+++.|... +++.++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||++++
T Consensus 675 ~l~~~L~~~---------------~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 675 KLATQLREL---------------VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred HHHHHHHHh---------------CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 999999875 45788999999999999999999999999999999999999999999999999999
Q ss_pred CC-ChhHHHhhhccccCCCCCccEEEEeCcc------chHHHHHHHHc
Q 007774 414 AG-EATEYVHRVGRTARLGERGDSLLFLQPV------EMDYLQDLEKH 454 (590)
Q Consensus 414 p~-s~~~yiqr~GRt~R~g~~g~~i~~l~~~------e~~~~~~l~~~ 454 (590)
|. +..+|.||+||+||.|+.|.|++++.+. ....++.+++.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 76 6789999999999999999999998643 34556666553
No 44
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.7e-44 Score=397.85 Aligned_cols=344 Identities=22% Similarity=0.298 Sum_probs=254.8
Q ss_pred CHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEE
Q 007774 26 HSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (590)
Q Consensus 26 ~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil 99 (590)
+..+.+.+.+.++|+ ||++|+++|+.+..+ .+++++|+||||||++|++|++..+. .|.+++|+
T Consensus 247 ~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---------~g~q~lil 316 (681)
T PRK10917 247 DGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---------AGYQAALM 316 (681)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---------cCCeEEEE
Confidence 456677777889997 999999999999876 48999999999999999999998874 36789999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH---HHHhcCC-CcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
+||++||.|+++.+++++...+ +.+++++||.+.... ...+..| ++|+||||+++.+. ..+.+++++|+
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~------v~~~~l~lvVI 389 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD------VEFHNLGLVII 389 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc------chhcccceEEE
Confidence 9999999999999999987543 678888998875433 3445554 99999999988542 34578999999
Q ss_pred echhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcc
Q 007774 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (590)
Q Consensus 176 DEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~ 255 (590)
||+|++ +......+..... .+++++||||+.+....+......++..+......
T Consensus 390 DE~Hrf-----g~~qr~~l~~~~~---------------~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~------ 443 (681)
T PRK10917 390 DEQHRF-----GVEQRLALREKGE---------------NPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG------ 443 (681)
T ss_pred echhhh-----hHHHHHHHHhcCC---------------CCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC------
Confidence 999994 3333444443321 58899999998665444333222222222110000
Q ss_pred cccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchh-----
Q 007774 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD----- 330 (590)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~----- 330 (590)
...+...+ + ...+...+...+.... ..+.+++|||++.+
T Consensus 444 -------------------------------r~~i~~~~--~-~~~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l 487 (681)
T PRK10917 444 -------------------------------RKPITTVV--I-PDSRRDEVYERIREEI--AKGRQAYVVCPLIEESEKL 487 (681)
T ss_pred -------------------------------CCCcEEEE--e-CcccHHHHHHHHHHHH--HcCCcEEEEEcccccccch
Confidence 00122221 1 2333345555665544 34679999999644
Q ss_pred ---hHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcE
Q 007774 331 ---AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (590)
Q Consensus 331 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~ 407 (590)
.++.+++.|... +++..+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++
T Consensus 488 ~~~~~~~~~~~L~~~---------------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 488 DLQSAEETYEELQEA---------------FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred hHHHHHHHHHHHHHH---------------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 445556666543 34678999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-ChhHHHhhhccccCCCCCccEEEEeC-c---cchHHHHHHHHc--CCCCccccc
Q 007774 408 IIQYDSAG-EATEYVHRVGRTARLGERGDSLLFLQ-P---VEMDYLQDLEKH--GVSLTEYPL 463 (590)
Q Consensus 408 VI~~d~p~-s~~~yiqr~GRt~R~g~~g~~i~~l~-~---~e~~~~~~l~~~--~~~~~~~~~ 463 (590)
||++++|. ..+.|.||+||+||.|..|.|+++.. + .+...+..+++. |+.+.+.++
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl 615 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDL 615 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhH
Confidence 99999997 57888889999999999999999995 4 345667777653 555555443
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4e-45 Score=408.83 Aligned_cols=364 Identities=23% Similarity=0.295 Sum_probs=262.8
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..|++|+|++.+.+.+. .+||.+|+|+|.++++. ++.|+|++++||||||||++|.+|+++.+.. +.++
T Consensus 1 ~~~~~l~lp~~~~~~l~-~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~ka 70 (737)
T PRK02362 1 MKIAELPLPEGVIEFYE-AEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKA 70 (737)
T ss_pred CChhhcCCCHHHHHHHH-hCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcE
Confidence 36899999999999995 57999999999999998 7789999999999999999999999998842 5679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
|||+||++||.|+++.++.+.. + ...++.++|+...... ....++|+|+||+++..++.+. ...+.+++++|+|
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViD 144 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVD 144 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEE
Confidence 9999999999999999997643 3 3567777777654322 2245799999999998888763 3456899999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|+|.+.+.+++..++.++..+.... ...|++++|||+++ ...++.+..... +........-. ..
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~------------~~~qii~lSATl~n-~~~la~wl~~~~--~~~~~rpv~l~-~~ 208 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLN------------PDLQVVALSATIGN-ADELADWLDAEL--VDSEWRPIDLR-EG 208 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcC------------CCCcEEEEcccCCC-HHHHHHHhCCCc--ccCCCCCCCCe-ee
Confidence 9999999999999999988876421 26899999999976 344544332111 00000000000 00
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecC-CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~ 335 (590)
..+. . ....+. .+..+..+. ......+...+ ..++++||||+|+..++.+
T Consensus 209 v~~~-------~--------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~LVF~~sr~~~~~~ 259 (737)
T PRK02362 209 VFYG-------G--------------AIHFDD--SQREVEVPSKDDTLNLVLDTL------EEGGQCLVFVSSRRNAEGF 259 (737)
T ss_pred EecC-------C--------------eecccc--ccccCCCccchHHHHHHHHHH------HcCCCeEEEEeCHHHHHHH
Confidence 0000 0 000000 000111111 11222222222 2367999999999999999
Q ss_pred HHhhhhccCCCCC-C-------------------ChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc
Q 007774 336 YSLLSEFQWSPHS-Q-------------------PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (590)
Q Consensus 336 ~~~l~~~~~~~~~-~-------------------~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv 395 (590)
+..|......... . .+..+.. .....+..+||+|++.+|..+++.|++|.++|||||++
T Consensus 260 a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~-~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~t 338 (737)
T PRK02362 260 AKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLAD-CVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPT 338 (737)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHH-HHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechh
Confidence 9888654211000 0 0001111 12346888999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEE----ec-----CCCChhHHHhhhccccCCCCC--ccEEEEeCcc
Q 007774 396 AARGLDFPKVKCIIQ----YD-----SAGEATEYVHRVGRTARLGER--GDSLLFLQPV 443 (590)
Q Consensus 396 ~~rGlDip~v~~VI~----~d-----~p~s~~~yiqr~GRt~R~g~~--g~~i~~l~~~ 443 (590)
+++|+|+|.+++||+ || .|.+..+|+||+|||||.|.. |.++++..+.
T Consensus 339 la~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 339 LAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred hhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999999997 77 688999999999999999864 8999988764
No 46
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-47 Score=341.87 Aligned_cols=336 Identities=26% Similarity=0.470 Sum_probs=290.2
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
..++.|.++-|.|++++++.+ .||+.|+.+|+++||...-|.|++++|..|-|||.+|.+..++.+.-. ....
T Consensus 39 ihssgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv------~g~v 111 (387)
T KOG0329|consen 39 IHSSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV------DGQV 111 (387)
T ss_pred EeccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC------CCeE
Confidence 345689999999999999975 699999999999999999999999999999999999999999887431 3457
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
.++++|.|||||.|+..+...+.++++...+.++.||...+...+.+.+.|+|+|+||||++.+.++ +.+.+++++..|
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFv 190 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFV 190 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceee
Confidence 7999999999999999999999999999999999999999988888988999999999999998877 778899999999
Q ss_pred Eechhhhhhc-CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCC
Q 007774 175 FDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (590)
Q Consensus 175 lDEah~ll~~-gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~ 253 (590)
+||||.|++. .-..++.+|++.-|. ..|++.||||++..++...+.++.+|..+-++.+.
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp~---------------~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~---- 251 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEA---- 251 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcc---------------cceeeeeeeecchhhHHHHHhhhcCchhhhccchh----
Confidence 9999998764 567888889888775 79999999999999999999999999998887764
Q ss_pred cccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
.-+...+.|+|+.....+|-..|..+|..+- -..++||+.+...
T Consensus 252 ------------------------------KLtLHGLqQ~YvkLke~eKNrkl~dLLd~Le----FNQVvIFvKsv~R-- 295 (387)
T KOG0329|consen 252 ------------------------------KLTLHGLQQYYVKLKENEKNRKLNDLLDVLE----FNQVVIFVKSVQR-- 295 (387)
T ss_pred ------------------------------hhhhhhHHHHHHhhhhhhhhhhhhhhhhhhh----hcceeEeeehhhh--
Confidence 2244678899999988888777777776542 3578898877543
Q ss_pred HHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecC
Q 007774 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (590)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~ 413 (590)
+ + | ..+ ++||++.+||+|+..|+.|+|||+
T Consensus 296 --------l----------------------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 296 --------L----------------------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred --------h----------------------------h----------h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 1 0 2 123 899999999999999999999999
Q ss_pred CCChhHHHhhhccccCCCCCccEEEEeCc-cchHHHHHHHHc-CCCCccccc
Q 007774 414 AGEATEYVHRVGRTARLGERGDSLLFLQP-VEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 414 p~s~~~yiqr~GRt~R~g~~g~~i~~l~~-~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
|.++.+|.||+||+||.|..|.++.|+.. .+...+..+..+ .+.+.++|-
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpd 377 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPD 377 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCc
Confidence 99999999999999999999999999987 556777777765 666666654
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-44 Score=401.09 Aligned_cols=363 Identities=21% Similarity=0.263 Sum_probs=263.1
Q ss_pred CccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 19 ~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
+|+++++++.+.+.+. ++||..|+|+|.++++. ++.|+|++++||||||||++|.+|+++.+.. .+.++|
T Consensus 2 ~~~~l~l~~~~~~~l~-~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l 72 (720)
T PRK00254 2 KVDELRVDERIKRVLK-ERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAV 72 (720)
T ss_pred cHHHcCCCHHHHHHHH-hCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEE
Confidence 6889999999999995 57999999999999986 7899999999999999999999999998754 246799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
+|+|+++|+.|+++.+..+.. + ...+..++|+...... ....++|+|+||+++..++.+ ....++++++||+||
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE 146 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADE 146 (720)
T ss_pred EEeChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcC
Confidence 999999999999999987643 3 3567777777654322 235689999999999888765 334578999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
+|.+.+.+++..++.++..++. ..|++++|||+++ ...++.+... +.+ .......+
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~---------------~~qiI~lSATl~n-~~~la~wl~~-~~~-~~~~rpv~------ 202 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLG---------------RAQILGLSATVGN-AEELAEWLNA-ELV-VSDWRPVK------ 202 (720)
T ss_pred cCccCCccchHHHHHHHHhcCc---------------CCcEEEEEccCCC-HHHHHHHhCC-ccc-cCCCCCCc------
Confidence 9999999999999999998864 6899999999986 4556654322 111 00000000
Q ss_pred cccCccccchhhccCCCccccccccccCCccc-ceeEEEEecCC--Ch-HHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQ-LVQRYVKVPCG--SR-LAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~--~k-~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
+... ..+.+...+.. .+ ...+...+.... ..+.++||||+|+..++
T Consensus 203 ----------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~vLVF~~sr~~~~ 252 (720)
T PRK00254 203 ----------------------------LRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV--KKGKGALVFVNTRRSAE 252 (720)
T ss_pred ----------------------------ceeeEecCCeeeccCcchhcchHHHHHHHHHHH--HhCCCEEEEEcChHHHH
Confidence 0000 00011111110 01 111222232322 13579999999999998
Q ss_pred HHHHhhhhccC---CCCC--------------CChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecccc
Q 007774 334 FHYSLLSEFQW---SPHS--------------QPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (590)
Q Consensus 334 ~~~~~l~~~~~---~~~~--------------~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~ 396 (590)
.++..+..... ..+. ..+..+.. .....+..+||+|++.+|..+.+.|++|.++|||||+++
T Consensus 253 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tL 331 (720)
T PRK00254 253 KEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKK-ALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTL 331 (720)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHH-HHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHH
Confidence 88776643211 0000 00011111 123468899999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEE-------ecCCC-ChhHHHhhhccccCCC--CCccEEEEeCccc-hHHHHHH
Q 007774 397 ARGLDFPKVKCIIQ-------YDSAG-EATEYVHRVGRTARLG--ERGDSLLFLQPVE-MDYLQDL 451 (590)
Q Consensus 397 ~rGlDip~v~~VI~-------~d~p~-s~~~yiqr~GRt~R~g--~~g~~i~~l~~~e-~~~~~~l 451 (590)
++|+|+|.+++||. ++.|. +..+|.||+||+||.| ..|.++++..+.+ ..+++.+
T Consensus 332 a~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 332 SAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred hhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHH
Confidence 99999999999994 45444 5679999999999975 6799999987755 3444433
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.6e-43 Score=402.75 Aligned_cols=323 Identities=20% Similarity=0.251 Sum_probs=249.2
Q ss_pred CCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEE
Q 007774 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (590)
Q Consensus 25 l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~li 98 (590)
.+........+.++|. ||++|.+||+.++.+ +|++++|+||||||.+|+.+++..+. .+.+++|
T Consensus 585 ~~~~~~~~~~~~~~~~-~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlv 654 (1147)
T PRK10689 585 HDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAV 654 (1147)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEE
Confidence 3455666666789995 999999999999987 89999999999999999988877653 3678999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHh---c-CCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL---R-KGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
|+||++||.|+++.+.+++..++ +.+.+++|+.+...+...+ . .+++|+||||+.+. ..+.+.++++||
T Consensus 655 LvPT~eLA~Q~~~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~------~~v~~~~L~lLV 727 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ------SDVKWKDLGLLI 727 (1147)
T ss_pred EeCcHHHHHHHHHHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh------CCCCHhhCCEEE
Confidence 99999999999999998766443 5566777777766554433 3 35899999997442 234567999999
Q ss_pred EechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCc
Q 007774 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (590)
Q Consensus 175 lDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~ 254 (590)
+||+|++ |+. ....+..++. .+|+++||||+.+....++...+.++..+......
T Consensus 728 IDEahrf---G~~--~~e~lk~l~~---------------~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~----- 782 (1147)
T PRK10689 728 VDEEHRF---GVR--HKERIKAMRA---------------DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR----- 782 (1147)
T ss_pred Eechhhc---chh--HHHHHHhcCC---------------CCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC-----
Confidence 9999995 332 3445555553 78999999999887777777778888777543321
Q ss_pred ccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHH
Q 007774 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
. ..+.+++..+ ........++.... .+++++||||+++.++.
T Consensus 783 ------------------------------r--~~v~~~~~~~---~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~ 824 (1147)
T PRK10689 783 ------------------------------R--LAVKTFVREY---DSLVVREAILREIL---RGGQVYYLYNDVENIQK 824 (1147)
T ss_pred ------------------------------C--CCceEEEEec---CcHHHHHHHHHHHh---cCCeEEEEECCHHHHHH
Confidence 0 0122222221 11111222333332 35789999999999999
Q ss_pred HHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC
Q 007774 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (590)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p 414 (590)
+++.|.+. +|+..+..+||+|++.+|.+++.+|++|+.+|||||+++++|||+|+|++||..++.
T Consensus 825 la~~L~~~---------------~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad 889 (1147)
T PRK10689 825 AAERLAEL---------------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 (1147)
T ss_pred HHHHHHHh---------------CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC
Confidence 99999875 457789999999999999999999999999999999999999999999999965543
Q ss_pred -CChhHHHhhhccccCCCCCccEEEEeCc
Q 007774 415 -GEATEYVHRVGRTARLGERGDSLLFLQP 442 (590)
Q Consensus 415 -~s~~~yiqr~GRt~R~g~~g~~i~~l~~ 442 (590)
.+..+|+||+||+||.|+.|.|+++..+
T Consensus 890 ~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 3567899999999999999999988754
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=8.1e-43 Score=382.36 Aligned_cols=345 Identities=19% Similarity=0.279 Sum_probs=243.6
Q ss_pred CHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEE
Q 007774 26 HSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (590)
Q Consensus 26 ~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil 99 (590)
+......+.+.++|+ ||++|+++|+.++.+ .+.+++|+||||||++|++|++..+. .|.+++|+
T Consensus 221 ~~~~~~~~~~~lpf~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---------~g~qvlil 290 (630)
T TIGR00643 221 SEELLTKFLASLPFK-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---------AGYQVALM 290 (630)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---------cCCcEEEE
Confidence 345555555789995 999999999999875 26899999999999999999998874 36789999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH---HHHhcC-CCcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
+||++||.|+++.+++++... .+.+.+++||...... ...+.. .++|+|+||+++.+. +.+.+++++|+
T Consensus 291 aPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~------~~~~~l~lvVI 363 (630)
T TIGR00643 291 APTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK------VEFKRLALVII 363 (630)
T ss_pred CCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc------ccccccceEEE
Confidence 999999999999999998754 3667888888765542 334444 489999999988542 34578999999
Q ss_pred echhhhhhcCchHHHHHHHH-HhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCc
Q 007774 176 DEADRILELGFGKEIEEILD-ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (590)
Q Consensus 176 DEah~ll~~gf~~~l~~il~-~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~ 254 (590)
||+|++ .......+. ..... ..+++++||||+.+....+......+...+.....
T Consensus 364 DEaH~f-----g~~qr~~l~~~~~~~-------------~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~------ 419 (630)
T TIGR00643 364 DEQHRF-----GVEQRKKLREKGQGG-------------FTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP------ 419 (630)
T ss_pred echhhc-----cHHHHHHHHHhcccC-------------CCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC------
Confidence 999984 222222222 22110 15789999999765433332211111111100000
Q ss_pred ccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchh----
Q 007774 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD---- 330 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~---- 330 (590)
.. ..+...+ +... ....++..+...+ ..+.+++|||++++
T Consensus 420 -----------------------------~r--~~i~~~~--~~~~-~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~ 463 (630)
T TIGR00643 420 -----------------------------GR--KPITTVL--IKHD-EKDIVYEFIEEEI--AKGRQAYVVYPLIEESEK 463 (630)
T ss_pred -----------------------------CC--CceEEEE--eCcc-hHHHHHHHHHHHH--HhCCcEEEEEcccccccc
Confidence 00 0111111 2222 2245555555543 24578999999764
Q ss_pred ----hHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCc
Q 007774 331 ----AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (590)
Q Consensus 331 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~ 406 (590)
.++.+++.|... +++..+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|+++
T Consensus 464 ~~~~~a~~~~~~L~~~---------------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~ 528 (630)
T TIGR00643 464 LDLKAAEALYERLKKA---------------FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNAT 528 (630)
T ss_pred chHHHHHHHHHHHHhh---------------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCc
Confidence 344555555442 3578899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-ChhHHHhhhccccCCCCCccEEEEe-Cccc---hHHHHHHHHc--CCCCcccc
Q 007774 407 CIIQYDSAG-EATEYVHRVGRTARLGERGDSLLFL-QPVE---MDYLQDLEKH--GVSLTEYP 462 (590)
Q Consensus 407 ~VI~~d~p~-s~~~yiqr~GRt~R~g~~g~~i~~l-~~~e---~~~~~~l~~~--~~~~~~~~ 462 (590)
+||++++|. +...|.||+||+||.|..|.|+++. .|.. ...++.+.+. |+.+.+.+
T Consensus 529 ~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~d 591 (630)
T TIGR00643 529 VMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEED 591 (630)
T ss_pred EEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHH
Confidence 999999997 5788888999999999999999998 3322 3345555543 44444433
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-42 Score=384.13 Aligned_cols=364 Identities=20% Similarity=0.252 Sum_probs=258.5
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|++++|++.+.+.+. ..+|+ ++++|.++++.+..|+|++++||||||||+++.+++++.+.. +.++|
T Consensus 1 ~~~~~~~l~~~~~~~~~-~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v 69 (674)
T PRK01172 1 MKISDLGYDDEFLNLFT-GNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSI 69 (674)
T ss_pred CcHhhcCCCHHHHHHHh-hCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEE
Confidence 36889999999999995 56898 999999999999999999999999999999999999988753 45799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
+++|+++||.|+++.++++.. . ...+...+|+...... ..+.++|+|+||+++..++.+.. ..+.+++++|+||
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDE 143 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADE 143 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEec
Confidence 999999999999999987643 2 3456667776544322 22467999999999988877633 3467899999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||++.+.+++..++.++..+...+ ...|++++|||+++ ...++.+..... +.......+
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~~------------~~~riI~lSATl~n-~~~la~wl~~~~--~~~~~r~vp------ 202 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYVN------------PDARILALSATVSN-ANELAQWLNASL--IKSNFRPVP------ 202 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhcC------------cCCcEEEEeCccCC-HHHHHHHhCCCc--cCCCCCCCC------
Confidence 999999999999999887765321 26899999999976 455555432111 000000000
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecCCC-hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
..... . ...+. .+.... ....+..++.... ..++++||||++++.++.++
T Consensus 203 ----l~~~i----~-----------------~~~~~--~~~~~~~~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a 253 (674)
T PRK01172 203 ----LKLGI----L-----------------YRKRL--ILDGYERSQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYA 253 (674)
T ss_pred ----eEEEE----E-----------------ecCee--eecccccccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHH
Confidence 00000 0 00000 010000 0111233344332 24679999999999999999
Q ss_pred HhhhhccCCCCC---------CChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcE
Q 007774 337 SLLSEFQWSPHS---------QPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (590)
Q Consensus 337 ~~l~~~~~~~~~---------~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~ 407 (590)
..|......... ..+......+ ...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+..+
T Consensus 254 ~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l-~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~V 332 (674)
T PRK01172 254 EMLIQHFPEFNDFKVSSENNNVYDDSLNEML-PHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLV 332 (674)
T ss_pred HHHHHhhhhcccccccccccccccHHHHHHH-hcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEE
Confidence 888654211100 0111222222 346888999999999999999999999999999999999999998755
Q ss_pred EEEecC---------CCChhHHHhhhccccCCCC--CccEEEEeCccc-hHHHHH
Q 007774 408 IIQYDS---------AGEATEYVHRVGRTARLGE--RGDSLLFLQPVE-MDYLQD 450 (590)
Q Consensus 408 VI~~d~---------p~s~~~yiqr~GRt~R~g~--~g~~i~~l~~~e-~~~~~~ 450 (590)
|| +|. |.++.+|.||+||+||.|. .|.+++++...+ .+++..
T Consensus 333 II-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~ 386 (674)
T PRK01172 333 IV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKK 386 (674)
T ss_pred EE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHH
Confidence 54 443 5588899999999999984 677888876543 444433
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.1e-41 Score=364.93 Aligned_cols=349 Identities=23% Similarity=0.290 Sum_probs=265.9
Q ss_pred CCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 25 l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
|++.+.+++.++ |..||++|.+|||.+.+|+|+|+.||||||||+|+++|++..|.... .....++..+|+|+|.|+
T Consensus 8 l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHH
Confidence 599999999764 99999999999999999999999999999999999999999998763 222356899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCC-CCCCceeEEEEechhhhhh
Q 007774 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-FLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 105 La~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~~~~~l~~lVlDEah~ll~ 183 (590)
|.+.+...+..++..++. .+..-+|.+.........++.|||+|+||+.|.-.+..... -.+.+++++|+||.|.+.+
T Consensus 85 Ln~Di~~rL~~~~~~~G~-~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 85 LNNDIRRRLEEPLRELGI-EVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHHHcCC-ccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 999999999999996654 44555554444444444556699999999999877765322 2678999999999999999
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCC--CEEEe-cCCCCCCCCccccccc
Q 007774 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET--PVLIG-LDEKKLPEDKSHVRFG 260 (590)
Q Consensus 184 ~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~--p~~i~-~~~~~~~~~~~~~~~~ 260 (590)
...+.++.--+.+|.... + +.|.+++|||..+ ....+++.... +..+. +....-....
T Consensus 164 sKRG~~Lsl~LeRL~~l~-----------~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~~i~------ 224 (814)
T COG1201 164 SKRGVQLALSLERLRELA-----------G-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKLEIK------ 224 (814)
T ss_pred cccchhhhhhHHHHHhhC-----------c-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcceEE------
Confidence 989989888888887542 1 6899999999975 34444433332 33332 2222100000
Q ss_pred CccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhh
Q 007774 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (590)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~ 340 (590)
...|....... ..........+..++++ ...++||+||+..++.++..|+
T Consensus 225 -----------------------v~~p~~~~~~~-~~~~~~~~~~i~~~v~~------~~ttLIF~NTR~~aE~l~~~L~ 274 (814)
T COG1201 225 -----------------------VISPVEDLIYD-EELWAALYERIAELVKK------HRTTLIFTNTRSGAERLAFRLK 274 (814)
T ss_pred -----------------------EEecCCccccc-cchhHHHHHHHHHHHhh------cCcEEEEEeChHHHHHHHHHHH
Confidence 00000000000 00111223333444433 4599999999999999999998
Q ss_pred hccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHH
Q 007774 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420 (590)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~y 420 (590)
... +..+...||.++...|..+.++|++|+.+++|||+.++-|||+.+|+.||||+.|.++..+
T Consensus 275 ~~~----------------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~ 338 (814)
T COG1201 275 KLG----------------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRF 338 (814)
T ss_pred Hhc----------------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHH
Confidence 863 3688999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCC-CCCccEEEEeCc
Q 007774 421 VHRVGRTARL-GERGDSLLFLQP 442 (590)
Q Consensus 421 iqr~GRt~R~-g~~g~~i~~l~~ 442 (590)
+||+||+|+. |..-.++++...
T Consensus 339 lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 339 LQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred hHhccccccccCCcccEEEEecC
Confidence 9999999964 555666666655
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.7e-41 Score=362.79 Aligned_cols=386 Identities=16% Similarity=0.194 Sum_probs=255.8
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCcchHHHH---------HHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVA---------YLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 43 t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~---------~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
..+|+++++.+++|++++++|+||||||.+ |+.|.+..+....+ ...+.+++|++||||||.|+...+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~---~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP---NFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc---ccCCcEEEEECcHHHHHHHHHHHH
Confidence 458999999999999999999999999997 44455554432111 123568999999999999999998
Q ss_pred HHHHhh--cCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHH
Q 007774 114 HKLLHR--FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191 (590)
Q Consensus 114 ~~~~~~--~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~ 191 (590)
.+.... +....+...+||... .......++.+|+|+|++... ..++++++|||||||++..++ +.+.
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l--------~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL--------NKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc--------cccccCCEEEccccccCccch--hHHH
Confidence 876642 223445677888762 222223346799999987311 235689999999999988765 4555
Q ss_pred HHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhcc
Q 007774 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271 (590)
Q Consensus 192 ~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (590)
.++..+... .+|+++||||+++.++.+. .++.+|..+.+....
T Consensus 312 ~llk~~~~~--------------~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~grt---------------------- 354 (675)
T PHA02653 312 AVARKHIDK--------------IRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPGGT---------------------- 354 (675)
T ss_pred HHHHHhhhh--------------cCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCCCc----------------------
Confidence 555544321 4699999999998888875 567788777664321
Q ss_pred CCCccccccccccCCcccceeEEEEec----------CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhh
Q 007774 272 HPSTTMRSTTEDFKLPAQLVQRYVKVP----------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341 (590)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~ 341 (590)
...+.++|.... ...+. .+...+.... ...++.+|||++++..++.+++.|..
T Consensus 355 ---------------~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~L~~~~-~~~~g~iLVFlpg~~ei~~l~~~L~~ 417 (675)
T PHA02653 355 ---------------LFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTALKKYT-PPKGSSGIVFVASVSQCEEYKKYLEK 417 (675)
T ss_pred ---------------CCCeEEEEeecCcccccchhhhHHHHH-HHHHHHHHhh-cccCCcEEEEECcHHHHHHHHHHHHh
Confidence 011222222111 01111 2223332211 12346899999999999999999976
Q ss_pred ccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHh-hccCccEEEeccccccCCCCCCCcEEEEec---CCC--
Q 007774 342 FQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF-KTEKKALLLSTDVAARGLDFPKVKCIIQYD---SAG-- 415 (590)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F-~~~~~~vLiaTdv~~rGlDip~v~~VI~~d---~p~-- 415 (590)
. .+++.+..+||+|++. .+++++| ++|+.+||||||+++||||+|+|++||++| .|.
T Consensus 418 ~---------------~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~ 480 (675)
T PHA02653 418 R---------------LPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPF 480 (675)
T ss_pred h---------------cCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcc
Confidence 4 1367899999999974 5677777 689999999999999999999999999999 665
Q ss_pred -------ChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHcCCCCccccchhhcccCCcCCCCccccccccccch
Q 007774 416 -------EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESH 488 (590)
Q Consensus 416 -------s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (590)
|.++|+||+|||||. ++|.|+.|+++.+...+..+.... +.++-+. +..+-. .... .-.......
T Consensus 481 ~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~~~~--L~~~vL~--lk~~g~--~~~~-~~~ldpP~~ 552 (675)
T PHA02653 481 GGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRIDSEF--LHNYILY--AKYFNL--TLPE-DLFVIPSNL 552 (675)
T ss_pred cCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHhHHH--HHHHHHH--HHHcCC--CCcc-cccCCCCCH
Confidence 888999999999999 789999999987753332222100 0000000 000000 0000 000111111
Q ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007774 489 PWILSLQNALESFIIHESKMKKLAKDAFCSWVR 521 (590)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~r 521 (590)
.......+.|..+-..|..+..+....|.+.++
T Consensus 553 ~~l~~A~~~L~~lga~~~~l~~l~~~~~~~~~~ 585 (675)
T PHA02653 553 DRLRKTEEYIDSFNISIEKWYEILSNYYVNMLE 585 (675)
T ss_pred HHHHHHHHHHHHcCCCchhhhhhhccccHHHHH
Confidence 223334445555556777888888888888883
No 53
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.1e-41 Score=386.27 Aligned_cols=321 Identities=19% Similarity=0.259 Sum_probs=240.3
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHH
Q 007774 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (590)
Q Consensus 29 l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 108 (590)
..+.+.+.+|+ .||++|+.++|.++.|+|+++.||||||||. |++|++..+.. .+.+++||+|||+|+.|
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Q 138 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQ 138 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHH
Confidence 34455556788 5999999999999999999999999999995 55666555432 36789999999999999
Q ss_pred HHHHHHHHHhhcCCcceEEEEcCCch-----HHHHHHhcC-CCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhh
Q 007774 109 VYEILHKLLHRFHWIVPGYVMGGENR-----SKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (590)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll 182 (590)
+++.++.+..... ..+..+.||... ......+.. +++|+|+|||+|.+++. .+....+++||+||||+++
T Consensus 139 i~~~l~~l~~~~~-~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 139 VVEKLEKFGEKVG-CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHhhhcC-ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhh
Confidence 9999999987544 444555555432 222334444 59999999999999886 3445579999999999999
Q ss_pred h-----------cCch-HHHHHHHHHhccCCCC-C-------CC-CCCCccccCceEEEEeecccch-HHHHHHhhcCCC
Q 007774 183 E-----------LGFG-KEIEEILDILGSRNIG-S-------IG-EGNEVSNVKRQNLLLSATLNEK-VNHLAKISLETP 240 (590)
Q Consensus 183 ~-----------~gf~-~~l~~il~~l~~~~~~-~-------~~-~~~~~~~~~~q~il~SAT~~~~-~~~l~~~~l~~p 240 (590)
+ +||. +++..++..++..... . .. .........+|++++|||+++. +.. ..+.++
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~l 291 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFREL 291 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhcc
Confidence 6 7895 7899999888752110 0 00 0000011268999999999864 332 122333
Q ss_pred EEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCc
Q 007774 241 VLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQ 320 (590)
Q Consensus 241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~ 320 (590)
..+.+... .....++.+.|+.++ .+...|..+++.. +.
T Consensus 292 l~~~v~~~-----------------------------------~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-----~~ 329 (1176)
T PRK09401 292 LGFEVGSP-----------------------------------VFYLRNIVDSYIVDE--DSVEKLVELVKRL-----GD 329 (1176)
T ss_pred ceEEecCc-----------------------------------ccccCCceEEEEEcc--cHHHHHHHHHHhc-----CC
Confidence 33333221 113456778777665 6777777777653 35
Q ss_pred eEEEEecchhh---HHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEe----c
Q 007774 321 KLVVFFSTCDA---VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS----T 393 (590)
Q Consensus 321 k~iVF~~t~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLia----T 393 (590)
.+||||+++.. ++.+++.|... |+.+..+||+| .+.+++|++|+.+|||| |
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~-----------------gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~t 387 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDL-----------------GINAELAISGF-----ERKFEKFEEGEVDVLVGVASYY 387 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHC-----------------CCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCC
Confidence 89999999887 99999999887 88999999999 23459999999999999 6
Q ss_pred cccccCCCCCC-CcEEEEecCCC------ChhHHHhhhccccCC
Q 007774 394 DVAARGLDFPK-VKCIIQYDSAG------EATEYVHRVGRTARL 430 (590)
Q Consensus 394 dv~~rGlDip~-v~~VI~~d~p~------s~~~yiqr~GRt~R~ 430 (590)
|+++||||+|+ |++|||||+|. ..+.|.||+||+...
T Consensus 388 dv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 388 GVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99999999999 89999999998 788999999999643
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=5e-41 Score=383.82 Aligned_cols=348 Identities=20% Similarity=0.165 Sum_probs=227.8
Q ss_pred EEccCcchHHHHHHHHHHHHHhhcCCC----CCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh-----------cCCcce
Q 007774 61 VNAATGTGKTVAYLAPIINHLQSYSPR----IDRSSGTFALVLVPTRELCLQVYEILHKLLHR-----------FHWIVP 125 (590)
Q Consensus 61 v~a~TGsGKTl~~l~pil~~l~~~~~~----~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~-----------~~~~~~ 125 (590)
|.||||||||++|++|+++.+...... .....+.++|||+|+++|+.|+++.++..+.. ...+.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998754211 11134689999999999999999998753321 124667
Q ss_pred EEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCC
Q 007774 126 GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSI 205 (590)
Q Consensus 126 ~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~ 205 (590)
+..+|+.........+++.++|||+||++|..++.+.....++++++||+||+|.+.+..++..+...+..+....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~---- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL---- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC----
Confidence 7888888777666667778999999999999887654344678999999999999998767666666666654321
Q ss_pred CCCCCccccCceEEEEeecccchHHHHHHhhc-CCCEEEecCCCCCCCCcccccccCccccchhhccCCCcccccccccc
Q 007774 206 GEGNEVSNVKRQNLLLSATLNEKVNHLAKISL-ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDF 284 (590)
Q Consensus 206 ~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l-~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (590)
+.+.|+|++|||+++ .+.++.+.. .+|+.+...... ... ..... + ...+. ...
T Consensus 157 -------~~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~-r~~--~l~v~-v--p~~d~------------~~~ 210 (1490)
T PRK09751 157 -------HTSAQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAM-RHP--QIRIV-V--PVANM------------DDV 210 (1490)
T ss_pred -------CCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCC-ccc--ceEEE-E--ecCch------------hhc
Confidence 126899999999987 455655433 345554321111 000 00000 0 00000 000
Q ss_pred CCccc--ceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCC--CCCh----hHHHh
Q 007774 285 KLPAQ--LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH--SQPD----MELKQ 356 (590)
Q Consensus 285 ~~~~~--l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~--~~~~----~~~~~ 356 (590)
..+.. -...........+......++... ..+.++||||||+..++.++..|++...... .... .....
T Consensus 211 ~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i---~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~ 287 (1490)
T PRK09751 211 SSVASGTGEDSHAGREGSIWPYIETGILDEV---LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFES 287 (1490)
T ss_pred cccccccccccchhhhhhhhHHHHHHHHHHH---hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhh
Confidence 00000 000000000000001111222222 1357899999999999999999876421000 0000 00000
Q ss_pred -------h---hcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhcc
Q 007774 357 -------L---FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426 (590)
Q Consensus 357 -------~---~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GR 426 (590)
. .....+..+||+|++.+|..+.+.|++|+.++||||+++++|||+++|++||||+.|.++.+|+||+||
T Consensus 288 ~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGR 367 (1490)
T PRK09751 288 TSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGR 367 (1490)
T ss_pred ccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCC
Confidence 0 011236789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCc
Q 007774 427 TARLGERGDSLLFLQP 442 (590)
Q Consensus 427 t~R~g~~g~~i~~l~~ 442 (590)
+||. ..|.+..++.+
T Consensus 368 AGR~-~gg~s~gli~p 382 (1490)
T PRK09751 368 AGHQ-VGGVSKGLFFP 382 (1490)
T ss_pred CCCC-CCCccEEEEEe
Confidence 9996 33444444444
No 55
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=7.1e-42 Score=330.63 Aligned_cols=315 Identities=25% Similarity=0.351 Sum_probs=232.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCc--ceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEE
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWI--VPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~--~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~l 173 (590)
++|+-|+||||+|.++.++++-.+.... ..-++.||.....+...+..|.+|+|+||||+.+.++. ..+.+...+++
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~crFl 367 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCRFL 367 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeEEE
Confidence 9999999999999999888876654333 33477889988899999999999999999999999876 55677889999
Q ss_pred EEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeeccc-chHHHHHHhhcCCCEEEecCCCCCCC
Q 007774 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKISLETPVLIGLDEKKLPE 252 (590)
Q Consensus 174 VlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~-~~~~~l~~~~l~~p~~i~~~~~~~~~ 252 (590)
|+||||.++..|+.+.|..+...+|.-+. .+.+.|.+++|||+. -++..+....+.-|..+........+
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~ts---------dg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTS---------DGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhc---------CCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccc
Confidence 99999999999999999999999986432 224789999999986 35677777778888888877655433
Q ss_pred CcccccccCccccchhhccCC---CccccccccccCCcccceeEEEEecCCChHHHHHHHHHhh-----hcccCCceEEE
Q 007774 253 DKSHVRFGSLESDVKEEVEHP---STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHL-----FDTEVSQKLVV 324 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~-----~~~~~~~k~iV 324 (590)
...+................. .........+...|-+. ..+....-..+++.. .....-.++||
T Consensus 439 etvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~--------Spe~~s~a~kilkgEy~v~ai~~h~mdkaii 510 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQV--------SPENPSSATKILKGEYGVVAIRRHAMDKAII 510 (725)
T ss_pred hhhccceeecCCccCccHHHHhhhhccCCcccccccccccC--------CCCChhhhhHHhcCchhhhhhhhhccCceEE
Confidence 222221111111111100000 00000000011111100 011111111122111 01123579999
Q ss_pred EecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCC
Q 007774 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (590)
Q Consensus 325 F~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~ 404 (590)
||.|...++.+.+++.+.+.. .+++.++||+..+.+|.+.++.|+++..+.||||||++||+||.+
T Consensus 511 fcrtk~dcDnLer~~~qkgg~--------------~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKGGK--------------HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred EEeccccchHHHHHHHHcCCc--------------cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccC
Confidence 999999999999999876433 678999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCc
Q 007774 405 VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQP 442 (590)
Q Consensus 405 v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~ 442 (590)
+-++|+...|.+...|+||+||+||+-+-|.++.++..
T Consensus 577 ~p~~invtlpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 577 LPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred CceEEEEecCcccchhhhhhhccchhhhcceeEEEeec
Confidence 99999999999999999999999999999999988653
No 56
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.6e-39 Score=371.62 Aligned_cols=309 Identities=21% Similarity=0.243 Sum_probs=221.1
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 27 ~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
.++.+.+.+..|+ .||++|+.++|.++.|+|+++.||||||||+ |.+|+...+.. .+.+++||+|||+||
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa 134 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHH
Confidence 3455555445566 5999999999999999999999999999997 66777766543 367899999999999
Q ss_pred HHHHHHHHHHHhhcCCcc--eEEEEcCCchHHH---HHHhcC-CCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh
Q 007774 107 LQVYEILHKLLHRFHWIV--PGYVMGGENRSKE---KARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (590)
Q Consensus 107 ~Q~~~~~~~~~~~~~~~~--~~~~~gg~~~~~~---~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ 180 (590)
.|+++.+..+....+... +++++||.+.... ...+.+ +++|+|+|||+|.+++... .. .++++|+||||+
T Consensus 135 ~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~ 210 (1171)
T TIGR01054 135 IQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDA 210 (1171)
T ss_pred HHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHh
Confidence 999999999987544222 3356677665543 234444 4999999999999887652 22 789999999999
Q ss_pred hhh-----------cCchHH-HHHHHHHhccCCCCCC-------CCCCCccccCce--EEEEeec-ccchHHHHHHhhcC
Q 007774 181 ILE-----------LGFGKE-IEEILDILGSRNIGSI-------GEGNEVSNVKRQ--NLLLSAT-LNEKVNHLAKISLE 238 (590)
Q Consensus 181 ll~-----------~gf~~~-l~~il~~l~~~~~~~~-------~~~~~~~~~~~q--~il~SAT-~~~~~~~l~~~~l~ 238 (590)
|++ +||.++ +..++..++....... .......+..+| ++++||| .|..+.. ..++
T Consensus 211 ~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r 287 (1171)
T TIGR01054 211 LLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFR 287 (1171)
T ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcc
Confidence 998 789864 6666544321000000 000000011344 5678999 4544332 2233
Q ss_pred CCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccC
Q 007774 239 TPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEV 318 (590)
Q Consensus 239 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~ 318 (590)
++..+.+... .....++.+.|+.+.. +...|..+++..
T Consensus 288 ~ll~~~v~~~-----------------------------------~~~~r~I~~~~~~~~~--~~~~L~~ll~~l----- 325 (1171)
T TIGR01054 288 ELLGFEVGGG-----------------------------------SDTLRNVVDVYVEDED--LKETLLEIVKKL----- 325 (1171)
T ss_pred cccceEecCc-----------------------------------cccccceEEEEEeccc--HHHHHHHHHHHc-----
Confidence 4433333221 1234567777765443 345566666543
Q ss_pred CceEEEEecch---hhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEe---
Q 007774 319 SQKLVVFFSTC---DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS--- 392 (590)
Q Consensus 319 ~~k~iVF~~t~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLia--- 392 (590)
+..+||||+++ +.|+.++..|... ++.+..+||+|++ .++++|++|+.+||||
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~-----------------g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~ 384 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENH-----------------GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVAS 384 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhC-----------------CceEEEEeCCCCH----HHHHHHHcCCCCEEEEecc
Confidence 36899999999 9999999999876 7889999999973 7899999999999999
Q ss_pred -ccccccCCCCCC-CcEEEEecCCC
Q 007774 393 -TDVAARGLDFPK-VKCIIQYDSAG 415 (590)
Q Consensus 393 -Tdv~~rGlDip~-v~~VI~~d~p~ 415 (590)
||+++||||+|+ |++|||||+|.
T Consensus 385 ~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 385 YYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ccCcccccCCCCccccEEEEECCCC
Confidence 599999999999 89999999884
No 57
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=7.8e-40 Score=380.65 Aligned_cols=348 Identities=19% Similarity=0.226 Sum_probs=251.8
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 27 ~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
.++.+.+.+.+|| .||++|+.+||.++.|+|+++.||||||||++++++++... ..+.++|||+||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---------~~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---------LKGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---------hcCCeEEEEECHHHHH
Confidence 3455566555899 59999999999999999999999999999996666655432 1357899999999999
Q ss_pred HHHHHHHHHHHhhcC-CcceEEEEcCCchHHHH---HHhcCC-CcEEEECChHHHHHHhccCCCCCCceeEEEEechhhh
Q 007774 107 LQVYEILHKLLHRFH-WIVPGYVMGGENRSKEK---ARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (590)
Q Consensus 107 ~Q~~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~---~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l 181 (590)
.|+++.++.++...+ ...+..++||.+..... ..+..+ ++|+|+|||+|.+++... . ..+++++|+||||+|
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceec
Confidence 999999999887553 24456677777655442 344554 999999999999877642 1 257899999999999
Q ss_pred hh-----------cCchHHHHH-HHHHhccCCC---CC-------CCCCCCccccCce-EEEEeecccchHHHHHHhhcC
Q 007774 182 LE-----------LGFGKEIEE-ILDILGSRNI---GS-------IGEGNEVSNVKRQ-NLLLSATLNEKVNHLAKISLE 238 (590)
Q Consensus 182 l~-----------~gf~~~l~~-il~~l~~~~~---~~-------~~~~~~~~~~~~q-~il~SAT~~~~~~~l~~~~l~ 238 (590)
++ +||.+++.. ++..++.... .. ........+..+| .+++|||++...... ..++
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~--~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRV--KLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHH--HHhh
Confidence 86 689888864 2222211000 00 0000000112345 678999998632211 1235
Q ss_pred CCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccC
Q 007774 239 TPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEV 318 (590)
Q Consensus 239 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~ 318 (590)
++..+.+... .....++.+.|+.+....+ ..|..+++..
T Consensus 291 ~~l~f~v~~~-----------------------------------~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----- 329 (1638)
T PRK14701 291 ELLGFEVGSG-----------------------------------RSALRNIVDVYLNPEKIIK-EHVRELLKKL----- 329 (1638)
T ss_pred cCeEEEecCC-----------------------------------CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-----
Confidence 5555544332 1234567788776654444 4666666653
Q ss_pred CceEEEEecchhhH---HHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEec--
Q 007774 319 SQKLVVFFSTCDAV---DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-- 393 (590)
Q Consensus 319 ~~k~iVF~~t~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaT-- 393 (590)
+..+||||+|++.+ +.+++.|... |+.+..+||+ |..++++|++|+.+|||||
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~-----------------Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s 387 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLED-----------------GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVAT 387 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHC-----------------CCeEEEecch-----HHHHHHHHHcCCCCEEEEecC
Confidence 46899999998765 7888888876 8889999995 8899999999999999999
Q ss_pred --cccccCCCCCC-CcEEEEecCCC---ChhHHHhhh-------------ccccCCCCCccEEEEeCccchHHHHHHH
Q 007774 394 --DVAARGLDFPK-VKCIIQYDSAG---EATEYVHRV-------------GRTARLGERGDSLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 394 --dv~~rGlDip~-v~~VI~~d~p~---s~~~yiqr~-------------GRt~R~g~~g~~i~~l~~~e~~~~~~l~ 452 (590)
++++||||+|+ |++|||||+|. +.+.|.|-. ||++|.|..+.+++...+.+..+++.+-
T Consensus 388 ~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 388 YYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred CCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHh
Confidence 59999999998 99999999999 888777766 9999999888887655566555554443
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.3e-39 Score=357.85 Aligned_cols=313 Identities=20% Similarity=0.256 Sum_probs=232.7
Q ss_pred HHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcc
Q 007774 45 VQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIV 124 (590)
Q Consensus 45 ~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~ 124 (590)
+-.+.+..+..+.+++++|+||||||.+|.+|+++... .+.+++|+.|||++|.|+++.+...........
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 33455566677889999999999999999999998752 245799999999999999998865443222345
Q ss_pred eEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechh-hhhhcCchHH-HHHHHHHhccCCC
Q 007774 125 PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD-RILELGFGKE-IEEILDILGSRNI 202 (590)
Q Consensus 125 ~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah-~ll~~gf~~~-l~~il~~l~~~~~ 202 (590)
+++.+++.+. ...+.+|+|+|||+|++++... ..++++++||||||| ++++.++.-. +..+...++.
T Consensus 77 VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~--- 145 (819)
T TIGR01970 77 VGYRVRGENK------VSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE--- 145 (819)
T ss_pred EEEEEccccc------cCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC---
Confidence 6666665432 2345789999999999998763 457899999999999 6787766433 3445555543
Q ss_pred CCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCcccccccc
Q 007774 203 GSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE 282 (590)
Q Consensus 203 ~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (590)
+.|+++||||++... +. .++.++..+.+....
T Consensus 146 ------------dlqlIlmSATl~~~~--l~-~~l~~~~vI~~~gr~--------------------------------- 177 (819)
T TIGR01970 146 ------------DLKILAMSATLDGER--LS-SLLPDAPVVESEGRS--------------------------------- 177 (819)
T ss_pred ------------CceEEEEeCCCCHHH--HH-HHcCCCcEEEecCcc---------------------------------
Confidence 789999999998653 33 344444344332211
Q ss_pred ccCCcccceeEEEEecCCChHH-HHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCc
Q 007774 283 DFKLPAQLVQRYVKVPCGSRLA-VLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC 361 (590)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~k~~-~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (590)
+ .+.++|...+...++. .+...+...+. ...+.+|||+++..+++.+++.|..... +++
T Consensus 178 -~----pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~~~--------------~~~ 237 (819)
T TIGR01970 178 -F----PVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAERLD--------------SDV 237 (819)
T ss_pred -e----eeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhhcC--------------CCc
Confidence 0 1334555444444432 22223333322 2357899999999999999999976311 267
Q ss_pred ceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC------------------hhHHHhh
Q 007774 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE------------------ATEYVHR 423 (590)
Q Consensus 362 ~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s------------------~~~yiqr 423 (590)
.++.+||+|++.+|.++++.|++|..+||||||++++|||||+|++||+++.|.. ..+|+||
T Consensus 238 ~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR 317 (819)
T TIGR01970 238 LICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQR 317 (819)
T ss_pred EEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999998863 3458999
Q ss_pred hccccCCCCCccEEEEeCccchH
Q 007774 424 VGRTARLGERGDSLLFLQPVEMD 446 (590)
Q Consensus 424 ~GRt~R~g~~g~~i~~l~~~e~~ 446 (590)
+||+||. +.|.|+.++++.+..
T Consensus 318 ~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 318 AGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred hhhcCCC-CCCEEEEeCCHHHHH
Confidence 9999999 799999999886543
No 59
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-39 Score=322.07 Aligned_cols=368 Identities=21% Similarity=0.249 Sum_probs=254.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
-+++.||.......+.+ |.|++.|||-|||+.+++-+...|.. ..+ ++|+++||+-|+.|.++.+.+.+.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~- 83 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTG- 83 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhC-
Confidence 35899999998888776 89999999999999999999988865 334 899999999999999999999876
Q ss_pred cCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcC-chHHHHHHHHHhc
Q 007774 120 FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG-FGKEIEEILDILG 198 (590)
Q Consensus 120 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g-f~~~l~~il~~l~ 198 (590)
.+...+..++|..........+ ...+|+|+||+.+.+-|.. +.++++++.++|+|||||....- |-.....++..-.
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred CChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 4445566777766655444444 4568999999999888876 67788999999999999976532 3333333333322
Q ss_pred cCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhh--c-CCCEEEecCCCC-CCCCcccccc---------------
Q 007774 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--L-ETPVLIGLDEKK-LPEDKSHVRF--------------- 259 (590)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~--l-~~p~~i~~~~~~-~~~~~~~~~~--------------- 259 (590)
.+.++++|||+....+.+.... | -..+.+....+. +.+.......
T Consensus 162 ----------------~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir 225 (542)
T COG1111 162 ----------------NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIR 225 (542)
T ss_pred ----------------CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHH
Confidence 6899999999987665554432 2 233333333221 1111111100
Q ss_pred -----------------cCccccc----hhh---c----cCCCcccc---------------------------------
Q 007774 260 -----------------GSLESDV----KEE---V----EHPSTTMR--------------------------------- 278 (590)
Q Consensus 260 -----------------~~~~~~~----~~~---~----~~~~~~~~--------------------------------- 278 (590)
+...... .+. . ........
T Consensus 226 ~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Y 305 (542)
T COG1111 226 DLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQY 305 (542)
T ss_pred HHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 0000000 000 0 00000000
Q ss_pred ---------c-cc-------cccCCccc---ceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHh
Q 007774 279 ---------S-TT-------EDFKLPAQ---LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338 (590)
Q Consensus 279 ---------~-~~-------~~~~~~~~---l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~ 338 (590)
. .. .+...... +...........|+..+..+++..+....+.++|||++.+++++.+...
T Consensus 306 l~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~ 385 (542)
T COG1111 306 LEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNF 385 (542)
T ss_pred HHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHH
Confidence 0 00 00000000 0001111124678999999999988777789999999999999999999
Q ss_pred hhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChh
Q 007774 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418 (590)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~ 418 (590)
|.+.+.... -.|.|..-.....+|+|+++.+++++|++|+.+|||||+++++|||+|.||.||.|++-.|+.
T Consensus 386 L~~~~~~~~--------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeI 457 (542)
T COG1111 386 LKKIGIKAR--------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEI 457 (542)
T ss_pred HHhcCCcce--------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHH
Confidence 988742210 001111112233589999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCCCCccEEEEeCccc
Q 007774 419 EYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 419 ~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
.++||.|||||. +.|.+++++....
T Consensus 458 R~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 458 RSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred HHHHhhCccccC-CCCeEEEEEecCc
Confidence 999999999998 8899999998863
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.7e-39 Score=340.00 Aligned_cols=338 Identities=21% Similarity=0.200 Sum_probs=251.1
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|+. ||++|..++|.++.|+ |++++||+|||++|++|++.... .|..++||+||++||.|.++++..
T Consensus 99 ~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al---------~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 99 VLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL---------AGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred HhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 46876 9999999999999998 99999999999999999998754 367899999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCC------------------------CCCCce
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSS------------------------FLHTNL 170 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~------------------------~~~~~l 170 (590)
+...+ .+.+++++||.+. +..+...+++|++||.+.+ +|.|...-. .....+
T Consensus 167 l~~~l-Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~ 243 (656)
T PRK12898 167 LYEAL-GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGL 243 (656)
T ss_pred HHhhc-CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccc
Confidence 98854 4788899998754 3444556899999999887 666654321 123567
Q ss_pred eEEEEechhhhh-hcC-----------------chHHHHHHHHHhccC--------------------------------
Q 007774 171 RWIIFDEADRIL-ELG-----------------FGKEIEEILDILGSR-------------------------------- 200 (590)
Q Consensus 171 ~~lVlDEah~ll-~~g-----------------f~~~l~~il~~l~~~-------------------------------- 200 (590)
.+.|+||||.++ |.. +...+..+...+...
T Consensus 244 ~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~ 323 (656)
T PRK12898 244 HFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPA 323 (656)
T ss_pred ceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhh
Confidence 899999999754 211 111112222211110
Q ss_pred CCC------------------------------------CCC--CCCC-----------------c--------------
Q 007774 201 NIG------------------------------------SIG--EGNE-----------------V-------------- 211 (590)
Q Consensus 201 ~~~------------------------------------~~~--~~~~-----------------~-------------- 211 (590)
-.. ..+ .... .
T Consensus 324 ~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~ 403 (656)
T PRK12898 324 WRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQR 403 (656)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHH
Confidence 000 000 0000 0
Q ss_pred -cccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccc
Q 007774 212 -SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQL 290 (590)
Q Consensus 212 -~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (590)
-.--....+||||.+...+++...+..+++.+-..... ....
T Consensus 404 ~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~-------------------------------------~r~~ 446 (656)
T PRK12898 404 FFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS-------------------------------------QRRH 446 (656)
T ss_pred HHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc-------------------------------------ccee
Confidence 00112568899999888888888877777665443221 1113
Q ss_pred eeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCC
Q 007774 291 VQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNM 370 (590)
Q Consensus 291 ~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~ 370 (590)
.+.++.++...|...|...+.... ..+.++||||+|++.++.++..|... ++++..|||++
T Consensus 447 ~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~se~L~~~L~~~-----------------gi~~~~Lhg~~ 507 (656)
T PRK12898 447 LPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAASERLSALLREA-----------------GLPHQVLNAKQ 507 (656)
T ss_pred cCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCEEEeeCCc
Confidence 344566777789999998887743 23568999999999999999999887 88899999986
Q ss_pred ChHHHHHHHHHhhccCccEEEeccccccCCCCC---CCc-----EEEEecCCCChhHHHhhhccccCCCCCccEEEEeCc
Q 007774 371 KQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP---KVK-----CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQP 442 (590)
Q Consensus 371 ~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip---~v~-----~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~ 442 (590)
.+ |+..+..|..+...|+||||+++||+||+ +|. +||+|+.|.+...|+||+|||||.|..|.++.|++.
T Consensus 508 ~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~ 585 (656)
T PRK12898 508 DA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSL 585 (656)
T ss_pred HH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEech
Confidence 54 55555556655668999999999999999 676 999999999999999999999999999999999998
Q ss_pred cchH
Q 007774 443 VEMD 446 (590)
Q Consensus 443 ~e~~ 446 (590)
.|.-
T Consensus 586 eD~l 589 (656)
T PRK12898 586 EDDL 589 (656)
T ss_pred hHHH
Confidence 6643
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.1e-38 Score=353.30 Aligned_cols=310 Identities=19% Similarity=0.263 Sum_probs=228.8
Q ss_pred HHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceE
Q 007774 47 AQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126 (590)
Q Consensus 47 ~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~ 126 (590)
.+.+..+.++++++++|+||||||.+|.+|+++... ...+++|+.|||++|.|+++.+...........++
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 345566667899999999999999999999987531 12479999999999999999886554333345677
Q ss_pred EEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh-hhhcCch-HHHHHHHHHhccCCCCC
Q 007774 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFG-KEIEEILDILGSRNIGS 204 (590)
Q Consensus 127 ~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-ll~~gf~-~~l~~il~~l~~~~~~~ 204 (590)
+.+++++... ...+|+|+|||+|++++... ..++++++|||||+|. .++.++. ..+..++..++.
T Consensus 82 y~vr~~~~~~------~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~----- 148 (812)
T PRK11664 82 YRMRAESKVG------PNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD----- 148 (812)
T ss_pred EEecCccccC------CCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc-----
Confidence 7777765322 34579999999999998763 4578999999999996 4554332 223444555543
Q ss_pred CCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCcccccccccc
Q 007774 205 IGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDF 284 (590)
Q Consensus 205 ~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (590)
+.|+++||||++.. .+.. ++.++..+.+.... +
T Consensus 149 ----------~lqlilmSATl~~~--~l~~-~~~~~~~I~~~gr~----------------------------------~ 181 (812)
T PRK11664 149 ----------DLKLLIMSATLDND--RLQQ-LLPDAPVIVSEGRS----------------------------------F 181 (812)
T ss_pred ----------cceEEEEecCCCHH--HHHH-hcCCCCEEEecCcc----------------------------------c
Confidence 68999999999864 3333 34444344332211 0
Q ss_pred CCcccceeEEEEecCCChHH-HHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcce
Q 007774 285 KLPAQLVQRYVKVPCGSRLA-VLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKT 363 (590)
Q Consensus 285 ~~~~~l~~~~~~~~~~~k~~-~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v 363 (590)
.+.++|...+...++. .+...+...+. ...+.+|||+++..+++.+++.|.... ..++.+
T Consensus 182 ----pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~--------------~~~~~v 242 (812)
T PRK11664 182 ----PVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRV--------------ASDVLL 242 (812)
T ss_pred ----cceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhc--------------cCCceE
Confidence 1344454444444443 22223333332 235799999999999999999998631 126789
Q ss_pred EeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC------------------hhHHHhhhc
Q 007774 364 FRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE------------------ATEYVHRVG 425 (590)
Q Consensus 364 ~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s------------------~~~yiqr~G 425 (590)
..+||+|++.+|.++++.|++|+.+||||||++++|||||+|++||+++.+.. .++|+||+|
T Consensus 243 ~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~G 322 (812)
T PRK11664 243 CPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAG 322 (812)
T ss_pred EEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999887753 358999999
Q ss_pred cccCCCCCccEEEEeCccch
Q 007774 426 RTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 426 Rt~R~g~~g~~i~~l~~~e~ 445 (590)
|+||. ..|.|+.++++.+.
T Consensus 323 RaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 323 RAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred ccCCC-CCcEEEEecCHHHH
Confidence 99999 69999999987654
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.7e-38 Score=339.84 Aligned_cols=331 Identities=16% Similarity=0.181 Sum_probs=224.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
..|+++|.++++.++.+++.++++|||+|||+++...+...+.. ...++|||+||++|+.||.+.+.++..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~~- 183 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYRL- 183 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhcc-
Confidence 36999999999999999999999999999999875533222221 234799999999999999999998764
Q ss_pred cCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 120 FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 120 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
........+.+|.... .+.+|+|+||+++.+.... .++++++||+||||++.+. .+..++..++.
T Consensus 184 ~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~ 248 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHLFTGK----SLTSIITKLDN 248 (501)
T ss_pred ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh----hccccCEEEEEchhcccch----hHHHHHHhhhc
Confidence 2223344555664332 3478999999999765421 3578999999999998753 45667777753
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccchHHHHHH-hhcCCCEEEecCCCCCCCCcccccc--cCccccchhhccCCCcc
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK-ISLETPVLIGLDEKKLPEDKSHVRF--GSLESDVKEEVEHPSTT 276 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~-~~l~~p~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 276 (590)
.+++++||||+.+....... ..+-.|....+....+........+ ..+....... .
T Consensus 249 ---------------~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~------~ 307 (501)
T PHA02558 249 ---------------CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDE------D 307 (501)
T ss_pred ---------------cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHH------H
Confidence 57899999999754322211 1111233333221111000000000 0000000000 0
Q ss_pred ccccccccCCccccee-EEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHH
Q 007774 277 MRSTTEDFKLPAQLVQ-RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELK 355 (590)
Q Consensus 277 ~~~~~~~~~~~~~l~~-~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~ 355 (590)
... . ....... .........+...+...+.... ..+.+++|||.+.++++.+++.|...
T Consensus 308 -~~~---~-~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~------------- 367 (501)
T PHA02558 308 -RVK---L-KGEDYQEEIKYITSHTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKV------------- 367 (501)
T ss_pred -hhh---h-cccchHHHHHHHhccHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc-------------
Confidence 000 0 0000000 0012223345555555555443 34578999999999999999999886
Q ss_pred hhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEec-cccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCc
Q 007774 356 QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-DVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERG 434 (590)
Q Consensus 356 ~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaT-dv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g 434 (590)
+.++..+||+|++.+|..+++.|++|+..||||| +++++|+|+|++++||.++++.+...|+||+||++|.+..+
T Consensus 368 ----g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 368 ----YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ----CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 7789999999999999999999999999999998 99999999999999999999999999999999999998765
Q ss_pred cEEEE
Q 007774 435 DSLLF 439 (590)
Q Consensus 435 ~~i~~ 439 (590)
....+
T Consensus 444 ~~~~i 448 (501)
T PHA02558 444 SIATV 448 (501)
T ss_pred ceEEE
Confidence 44443
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.4e-38 Score=329.34 Aligned_cols=301 Identities=21% Similarity=0.254 Sum_probs=208.7
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchH--
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS-- 135 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~-- 135 (590)
++++.||||||||++|++|++..+.. ..+.++++++|+++|+.|+++.+..++.. ..+.+.|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHH
Confidence 58999999999999999999988643 34568999999999999999999987431 233333332210
Q ss_pred ----------HHHHHhc------CCCcEEEECChHHHHHHhccCC---CCCC--ceeEEEEechhhhhhcCchHHHHHHH
Q 007774 136 ----------KEKARLR------KGISILVATPGRLLDHLKHTSS---FLHT--NLRWIIFDEADRILELGFGKEIEEIL 194 (590)
Q Consensus 136 ----------~~~~~l~------~~~~IlV~Tp~rl~~~l~~~~~---~~~~--~l~~lVlDEah~ll~~gf~~~l~~il 194 (590)
....... -..+|+|+||++++..+..... ..+. ..+++|+||||.+.+.++.. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 1111111 1357999999999887765211 1111 23789999999998876554 77777
Q ss_pred HHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCC
Q 007774 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPS 274 (590)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (590)
..++.. ..|+++||||+|+.+..+.......+.....+...
T Consensus 149 ~~l~~~--------------~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~------------------------- 189 (358)
T TIGR01587 149 EVLKDN--------------DVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE------------------------- 189 (358)
T ss_pred HHHHHc--------------CCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc-------------------------
Confidence 777532 68999999999977766654332211110000000
Q ss_pred ccccccccccCCcccceeEEEEec--CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChh
Q 007774 275 TTMRSTTEDFKLPAQLVQRYVKVP--CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDM 352 (590)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~ 352 (590)
......+.+..+. ...+...+..++... ..+.++||||+|++.++.+++.|.+..
T Consensus 190 -----------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lVf~~t~~~~~~~~~~L~~~~--------- 246 (358)
T TIGR01587 190 -----------ERRFERHRFIKIESDKVGEISSLERLLEFI---KKGGKIAIIVNTVDRAQEFYQQLKENA--------- 246 (358)
T ss_pred -----------ccccccccceeeccccccCHHHHHHHHHHh---hCCCeEEEEECCHHHHHHHHHHHHhhc---------
Confidence 0000011111111 234555565555433 246899999999999999999998752
Q ss_pred HHHhhhcCcceEeccCCCChHHHHH----HHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhcccc
Q 007774 353 ELKQLFLRCKTFRLHGNMKQEDRRT----TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTA 428 (590)
Q Consensus 353 ~~~~~~~~~~v~~lhg~~~~~~R~~----~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~ 428 (590)
+...+..+||++++.+|.+ +++.|++++..||||||++++|+|+| +++||+++.| ++.|+||+||+|
T Consensus 247 ------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~g 317 (358)
T TIGR01587 247 ------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLH 317 (358)
T ss_pred ------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhcccc
Confidence 1346899999999999976 48999999999999999999999995 8899998876 789999999999
Q ss_pred CCCCCc----cEEEEeC
Q 007774 429 RLGERG----DSLLFLQ 441 (590)
Q Consensus 429 R~g~~g----~~i~~l~ 441 (590)
|.|+.+ ..++|..
T Consensus 318 R~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 318 RYGRKNGENFEVYIITI 334 (358)
T ss_pred CCCCCCCCCCeEEEEee
Confidence 998643 4555543
No 64
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-38 Score=329.61 Aligned_cols=337 Identities=21% Similarity=0.314 Sum_probs=257.0
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 28 ~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
.+...|.+-|||...++-|.++|..+++|+|+++..|||+||++||-+|++-. ...+|||+|..+|..
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHH
Confidence 34466777799999999999999999999999999999999999999999753 236999999999999
Q ss_pred HHHHHHHHHHhhcCCcceEEEEcCCchHHH---HHHhcCC-CcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh
Q 007774 108 QVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 108 Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
.+.+.+.... +...++.++-+.... ...+..+ .+++.-+|++|..--.. ..+.-..+.++||||||++.+
T Consensus 72 DQV~~l~~~G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSq 145 (590)
T COG0514 72 DQVDQLEAAG-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQ 145 (590)
T ss_pred HHHHHHHHcC-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhh
Confidence 8888888653 344445444333322 2333334 89999999998432111 111124788999999999999
Q ss_pred cC--chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHH--hhcCCCEEEecCCCCCCCCcccccc
Q 007774 184 LG--FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK--ISLETPVLIGLDEKKLPEDKSHVRF 259 (590)
Q Consensus 184 ~g--f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~--~~l~~p~~i~~~~~~~~~~~~~~~~ 259 (590)
|| |..++..+-....... ...++.+|||-++.+..-.. +.+..+..+.....-
T Consensus 146 WGhdFRP~Y~~lg~l~~~~~-------------~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR---------- 202 (590)
T COG0514 146 WGHDFRPDYRRLGRLRAGLP-------------NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR---------- 202 (590)
T ss_pred cCCccCHhHHHHHHHHhhCC-------------CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----------
Confidence 98 8888877766554321 67899999999888766444 445555443332221
Q ss_pred cCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhh
Q 007774 260 GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (590)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l 339 (590)
++ -+|.+.+...-...+. ++.. ......+..||||.|+..|+.+++.|
T Consensus 203 ----------------------------pN--i~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L 250 (590)
T COG0514 203 ----------------------------PN--LALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWL 250 (590)
T ss_pred ----------------------------ch--hhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHH
Confidence 00 0111111111111122 3332 11234567999999999999999999
Q ss_pred hhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhH
Q 007774 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATE 419 (590)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~ 419 (590)
... |+.+..+||+|+..+|..+.++|..++..|+|||...+.|||-|+|.+|||||+|.|++.
T Consensus 251 ~~~-----------------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~Es 313 (590)
T COG0514 251 RKN-----------------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIES 313 (590)
T ss_pred HHC-----------------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHH
Confidence 887 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 420 YVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 420 yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
|+|-+||+||.|....|++|+.|.|..+.+.+.+.
T Consensus 314 YyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 314 YYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999998877766655
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-37 Score=337.68 Aligned_cols=337 Identities=18% Similarity=0.215 Sum_probs=240.8
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 35 ~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
..+|+. |+++|..+++.+..|+ +++++||+|||++|++|++.... .|..++|++||++||.|.++++.
T Consensus 73 R~~g~~-p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---------~G~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 73 RVLGMR-PYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL---------EGKGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred HHhCCC-CchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH---------cCCCeEEEeCCHHHHHHHHHHHH
Confidence 347884 9999999999998886 99999999999999999986554 36789999999999999999999
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccC-----CCCCCceeEEEEechhhhh-hcC--
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL-ELG-- 185 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~ll-~~g-- 185 (590)
.+...+ .+.++++.||.+...+++. ..+++|++|||+++ +|+|...- ......+.++|+||||+++ |..
T Consensus 141 ~l~~~l-Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~t 218 (790)
T PRK09200 141 QVYEFL-GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQT 218 (790)
T ss_pred HHHhhc-CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCC
Confidence 999854 5888899998874444443 35699999999999 56555422 1355789999999999854 211
Q ss_pred -------------chHHHHHHHHHhccC-----------------------------CC---------------------
Q 007774 186 -------------FGKEIEEILDILGSR-----------------------------NI--------------------- 202 (590)
Q Consensus 186 -------------f~~~l~~il~~l~~~-----------------------------~~--------------------- 202 (590)
+...+..+...+... +.
T Consensus 219 pliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~ 298 (790)
T PRK09200 219 PLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVL 298 (790)
T ss_pred ceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 112222222222110 00
Q ss_pred ------------------CCCCC--CCC----------------ccccC----------------ceEEEEeecccchHH
Q 007774 203 ------------------GSIGE--GNE----------------VSNVK----------------RQNLLLSATLNEKVN 230 (590)
Q Consensus 203 ------------------~~~~~--~~~----------------~~~~~----------------~q~il~SAT~~~~~~ 230 (590)
...+. ... ..... ..+.+||+|....-.
T Consensus 299 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~ 378 (790)
T PRK09200 299 FKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEK 378 (790)
T ss_pred hhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHH
Confidence 00000 000 00000 123445555433333
Q ss_pred HHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccc--eeEEEEecCCChHHHHHH
Q 007774 231 HLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQL--VQRYVKVPCGSRLAVLLS 308 (590)
Q Consensus 231 ~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~k~~~L~~ 308 (590)
++...+--+ .+.+... .|... ....+.++...|...+..
T Consensus 379 e~~~~Y~l~--v~~IPt~-------------------------------------kp~~r~d~~~~i~~~~~~K~~al~~ 419 (790)
T PRK09200 379 EFFEVYNME--VVQIPTN-------------------------------------RPIIRIDYPDKVFVTLDEKYKAVIE 419 (790)
T ss_pred HHHHHhCCc--EEECCCC-------------------------------------CCcccccCCCeEEcCHHHHHHHHHH
Confidence 332222111 1111110 11111 112344566788888988
Q ss_pred HHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCcc
Q 007774 309 ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA 388 (590)
Q Consensus 309 ~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~ 388 (590)
.+.... ..+.++||||+|++.++.++..|... ++++..+||++.++++..+...++.| .
T Consensus 420 ~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~-----------------gi~~~~L~~~~~~~e~~~i~~ag~~g--~ 478 (790)
T PRK09200 420 EVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA-----------------GIPHNLLNAKNAAKEAQIIAEAGQKG--A 478 (790)
T ss_pred HHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCEEEecCCccHHHHHHHHHcCCCC--e
Confidence 887643 24689999999999999999999887 78899999999999988888888766 7
Q ss_pred EEEeccccccCCCC---CCCc-----EEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 389 LLLSTDVAARGLDF---PKVK-----CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 389 vLiaTdv~~rGlDi---p~v~-----~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
|+||||+++||+|| |+|. +||+|+.|.+...|+||+|||||.|.+|.++.|++..|.
T Consensus 479 VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 479 VTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred EEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999 7998 999999999999999999999999999999999998663
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.8e-36 Score=325.40 Aligned_cols=361 Identities=17% Similarity=0.192 Sum_probs=231.6
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 37 LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
+|. .|+++|..+...+..| .+++++||+|||++|++|++..... |..++|++|+++||.|+++++..+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHH
Confidence 565 3666666665555555 7999999999999999998766543 456999999999999999999999
Q ss_pred HhhcCCcceEEEEcCCc---hHHHHHHhcCCCcEEEECChHH-HHHHhcc-----CCCCCCceeEEEEechhhhhhc-C-
Q 007774 117 LHRFHWIVPGYVMGGEN---RSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILEL-G- 185 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~---~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~ll~~-g- 185 (590)
...++ +.+++.++|.. ...+..+...+++|++|||++| .+.|... ....+..+.++|+||||+|+-. .
T Consensus 135 ~~~LG-Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDear 213 (762)
T TIGR03714 135 YEWLG-LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQ 213 (762)
T ss_pred HhhcC-CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCc
Confidence 88654 55666665521 2222334446799999999999 5655432 2234678999999999998642 1
Q ss_pred --------------chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHH-------------------
Q 007774 186 --------------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL------------------- 232 (590)
Q Consensus 186 --------------f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l------------------- 232 (590)
+...+..+...|..... -.. ..+.+.+.++-.--..++.+
T Consensus 214 tpliisg~~~~~~~~y~~~~~~v~~l~~~~d------y~~-d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~ 286 (762)
T TIGR03714 214 TPLVISGAPRVQSNLYHIADTFVRTLKEDVD------YIF-KKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHIN 286 (762)
T ss_pred CCeeeeCCCccchHHHHHHHHHHHhcCCCCC------eEE-EcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHH
Confidence 22334444455443100 000 00122233332111111111
Q ss_pred --HH--hhc-CCCEEEe-------cCCCCCCCCcccccccC--------------------------------------c
Q 007774 233 --AK--ISL-ETPVLIG-------LDEKKLPEDKSHVRFGS--------------------------------------L 262 (590)
Q Consensus 233 --~~--~~l-~~p~~i~-------~~~~~~~~~~~~~~~~~--------------------------------------~ 262 (590)
.. ..+ ++-.++. ++... ........+.. +
T Consensus 287 ~al~A~~~~~~d~dYiV~~~~v~ivD~~T-Gr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~Gm 365 (762)
T TIGR03714 287 LALRAHYLFKRNKDYVVTNGEVVLLDRIT-GRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGM 365 (762)
T ss_pred HHHHHHHHHhcCCceEEECCEEEEEECCC-CcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhccc
Confidence 00 111 1222221 11110 00000000000 0
Q ss_pred cc---cchhhccCCCccccccccccCCcccc----e--eEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 263 ES---DVKEEVEHPSTTMRSTTEDFKLPAQL----V--QRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 263 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~l----~--~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
.. ....++..... ..-..+|.+. . ...+..+...|..++...+.... ..+.++||||+|++.++
T Consensus 366 TGTa~~~~~Ef~~iY~-----l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se 438 (762)
T TIGR03714 366 TGTGKVAEKEFIETYS-----LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSE 438 (762)
T ss_pred CCCChhHHHHHHHHhC-----CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHH
Confidence 00 00000000000 0001222221 1 12455566778888888887654 34689999999999999
Q ss_pred HHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCC---------C
Q 007774 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP---------K 404 (590)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip---------~ 404 (590)
.+...|... ++++..+||++.+++|..+.+.|+.| .|+||||+++||+||| +
T Consensus 439 ~ls~~L~~~-----------------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GG 499 (762)
T TIGR03714 439 IYSELLLRE-----------------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGG 499 (762)
T ss_pred HHHHHHHHC-----------------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCC
Confidence 999999887 78889999999999998888877766 7999999999999999 9
Q ss_pred CcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 405 VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 405 v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
+.+|++|++|....+ +||+|||||.|.+|.++.|+++.|.
T Consensus 500 L~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 500 LAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred eEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 999999999998777 9999999999999999999998663
No 67
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.4e-35 Score=332.94 Aligned_cols=358 Identities=23% Similarity=0.255 Sum_probs=240.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
-.|+++|.+++..++.+ |+++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++.++.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~- 83 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFLN- 83 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHhC-
Confidence 35999999999988887 99999999999999999999887732 356799999999999999999998764
Q ss_pred cCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 120 FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 120 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
.....+..+.|+.... +...+..+.+|+|+||+.+...+.. ..+.+.++++||+||||++........+...+....
T Consensus 84 ~~~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~- 160 (773)
T PRK13766 84 IPEEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDA- 160 (773)
T ss_pred CCCceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcC-
Confidence 2223455566665544 3444455689999999999877754 455678899999999999875433333333222221
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccchHHHHH---HhhcCCCEEEecCCCC-CCCCcccc--cc--cCcccc------
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA---KISLETPVLIGLDEKK-LPEDKSHV--RF--GSLESD------ 265 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~---~~~l~~p~~i~~~~~~-~~~~~~~~--~~--~~~~~~------ 265 (590)
..+++++||||+......+. .........+...... +....... .+ ......
T Consensus 161 --------------~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~ 226 (773)
T PRK13766 161 --------------KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRD 226 (773)
T ss_pred --------------CCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHH
Confidence 15789999999864433332 2211111111111000 00000000 00 000000
Q ss_pred ---------chh--hccCCCcccc--c-------------c-ccccC---------------------------------
Q 007774 266 ---------VKE--EVEHPSTTMR--S-------------T-TEDFK--------------------------------- 285 (590)
Q Consensus 266 ---------~~~--~~~~~~~~~~--~-------------~-~~~~~--------------------------------- 285 (590)
... .......... . . .....
T Consensus 227 ~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y 306 (773)
T PRK13766 227 LLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRY 306 (773)
T ss_pred HHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 000 0000000000 0 0 00000
Q ss_pred ----------------------Cc---ccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhh
Q 007774 286 ----------------------LP---AQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (590)
Q Consensus 286 ----------------------~~---~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~ 340 (590)
.+ ..+...........|...|..+|...+....+.++||||++++.++++++.|.
T Consensus 307 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~ 386 (773)
T PRK13766 307 LERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLE 386 (773)
T ss_pred HHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 00 00000000123356888888888887655567899999999999999999997
Q ss_pred hccCCCCCCChhHHHhhhcCcceEeccCC--------CChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEec
Q 007774 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGN--------MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (590)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~v~~lhg~--------~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d 412 (590)
.. ++.+..+||. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+||
T Consensus 387 ~~-----------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd 449 (773)
T PRK13766 387 KE-----------------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYE 449 (773)
T ss_pred hC-----------------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeC
Confidence 65 5566677775 9999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHhhhccccCCCCCccEEEEeCc
Q 007774 413 SAGEATEYVHRVGRTARLGERGDSLLFLQP 442 (590)
Q Consensus 413 ~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~ 442 (590)
+|+++..|+||+||+||.|. |.+++++..
T Consensus 450 ~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~ 478 (773)
T PRK13766 450 PVPSEIRSIQRKGRTGRQEE-GRVVVLIAK 478 (773)
T ss_pred CCCCHHHHHHHhcccCcCCC-CEEEEEEeC
Confidence 99999999999999999876 788887764
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2e-35 Score=315.34 Aligned_cols=337 Identities=19% Similarity=0.210 Sum_probs=240.0
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 35 ~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
..+|+. |+++|..+.+.+..|+ +++++||+|||++|++|++-.... |..+.|++||++||.|.++++.
T Consensus 51 R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~ 118 (745)
T TIGR00963 51 RVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMG 118 (745)
T ss_pred HHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHH
Confidence 347876 9999999999988886 999999999999999999643322 4569999999999999999999
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccC-----CCCCCceeEEEEechhhhhh-c---
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRILE-L--- 184 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~ll~-~--- 184 (590)
.+...+ .+.+++++||.+....... ..++|++|||++| ++++.... ...+..+.++|+||||+++= .
T Consensus 119 ~l~~~L-GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRt 195 (745)
T TIGR00963 119 QVYRFL-GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEART 195 (745)
T ss_pred HHhccC-CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhh
Confidence 998854 4788899998876543333 3589999999999 99998753 24568899999999998653 1
Q ss_pred -----C-------chHHHHHHHHHhccC-----------------------------CCC--------------------
Q 007774 185 -----G-------FGKEIEEILDILGSR-----------------------------NIG-------------------- 203 (590)
Q Consensus 185 -----g-------f~~~l~~il~~l~~~-----------------------------~~~-------------------- 203 (590)
| .......|...+... +.-
T Consensus 196 pLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l 275 (745)
T TIGR00963 196 PLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKEL 275 (745)
T ss_pred HHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 1 011111222222110 000
Q ss_pred -------------------CCCC--CCC----------------ccccC----------------ceEEEEeecccchHH
Q 007774 204 -------------------SIGE--GNE----------------VSNVK----------------RQNLLLSATLNEKVN 230 (590)
Q Consensus 204 -------------------~~~~--~~~----------------~~~~~----------------~q~il~SAT~~~~~~ 230 (590)
..+. ... ..... ....+||+|......
T Consensus 276 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 355 (745)
T TIGR00963 276 FEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEE 355 (745)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHH
Confidence 0000 000 00001 134455555544334
Q ss_pred HHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccc--eeEEEEecCCChHHHHHH
Q 007774 231 HLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQL--VQRYVKVPCGSRLAVLLS 308 (590)
Q Consensus 231 ~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~k~~~L~~ 308 (590)
++...+--+-+. +... .|... ....+..+...|..++..
T Consensus 356 E~~~iY~l~vv~--IPtn-------------------------------------kp~~R~d~~d~i~~t~~~k~~ai~~ 396 (745)
T TIGR00963 356 EFEKIYNLEVVV--VPTN-------------------------------------RPVIRKDLSDLVYKTEEEKWKAVVD 396 (745)
T ss_pred HHHHHhCCCEEE--eCCC-------------------------------------CCeeeeeCCCeEEcCHHHHHHHHHH
Confidence 443332211111 1110 01100 111233344567777777
Q ss_pred HHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCcc
Q 007774 309 ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA 388 (590)
Q Consensus 309 ~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~ 388 (590)
.+.... ..+.++||||+|++.++.+...|.+. +++...+||+ +.+|+..+..|..+...
T Consensus 397 ~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~-----------------gi~~~~Lna~--q~~rEa~ii~~ag~~g~ 455 (745)
T TIGR00963 397 EIKERH--AKGQPVLVGTTSVEKSELLSNLLKER-----------------GIPHNVLNAK--NHEREAEIIAQAGRKGA 455 (745)
T ss_pred HHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHc-----------------CCCeEEeeCC--hHHHHHHHHHhcCCCce
Confidence 665544 45789999999999999999999987 7788899998 88999999999999999
Q ss_pred EEEeccccccCCCCCC-------CcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchH
Q 007774 389 LLLSTDVAARGLDFPK-------VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMD 446 (590)
Q Consensus 389 vLiaTdv~~rGlDip~-------v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~ 446 (590)
|+|||++|+||+||+. .-+||+++.|.|...|.||+|||||.|.+|.+..|+...|.-
T Consensus 456 VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 456 VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 9999999999999988 459999999999999999999999999999999999987643
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=8e-35 Score=298.20 Aligned_cols=314 Identities=19% Similarity=0.190 Sum_probs=201.7
Q ss_pred HHHHHHHHHhcCCc--EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcC-
Q 007774 45 VQAQAIPVILSGRH--VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH- 121 (590)
Q Consensus 45 ~Q~~~i~~il~g~d--vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~- 121 (590)
+|.++++.+..+.+ +++.||||||||++|++|++.. +.++++++|+++|+.|+++.+..+...+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 69999999998874 7899999999999999998842 23589999999999999999999875442
Q ss_pred --CcceEEEEcCCchHHH--------------------H-HHhcCCCcEEEECChHHHHHHhcc---CC----CCCCcee
Q 007774 122 --WIVPGYVMGGENRSKE--------------------K-ARLRKGISILVATPGRLLDHLKHT---SS----FLHTNLR 171 (590)
Q Consensus 122 --~~~~~~~~gg~~~~~~--------------------~-~~l~~~~~IlV~Tp~rl~~~l~~~---~~----~~~~~l~ 171 (590)
...+..+.| ....+. + ....+.+.|+++||+.+..++... .. ..+.+++
T Consensus 69 ~~~~~v~~~~g-~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 69 ERDVNLLHVSK-ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCCceEEEecC-CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 222333333 322110 0 111246889999999987655431 11 1246899
Q ss_pred EEEEechhhhhhcCc-----hHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhh--cCCCEEEe
Q 007774 172 WIIFDEADRILELGF-----GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--LETPVLIG 244 (590)
Q Consensus 172 ~lVlDEah~ll~~gf-----~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~--l~~p~~i~ 244 (590)
++|+||+|.+...+. .-....++..... ..+++++|||+++.+....... +..|....
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v 212 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC---------------RRKFVFLSATPDPALILRLQNAKQAGVKIAPI 212 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhhhc---------------CCcEEEEecCCCHHHHHHHHhccccCceeeee
Confidence 999999998654321 1122233333221 4799999999998766655533 34443222
Q ss_pred cCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHH---hhhcccCCce
Q 007774 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILK---HLFDTEVSQK 321 (590)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~---~~~~~~~~~k 321 (590)
..... ... +..+... ......-..+-..+.+.+.. ....+...+..++. +.+....+.+
T Consensus 213 ~g~~~-~~~-----------~~~~~~~-----~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k 274 (357)
T TIGR03158 213 DGEKY-QFP-----------DNPELEA-----DNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGER 274 (357)
T ss_pred cCccc-ccC-----------CChhhhc-----cccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCe
Confidence 21110 000 0000000 00000001111234444333 33334433333333 2222234679
Q ss_pred EEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCC
Q 007774 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLD 401 (590)
Q Consensus 322 ~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlD 401 (590)
+||||+|+..++.++..|+..+ .+..+..+||.+++.+|.++ ++..||||||+++||||
T Consensus 275 ~LIf~nt~~~~~~l~~~L~~~~---------------~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiD 333 (357)
T TIGR03158 275 GAIILDSLDEVNRLSDLLQQQG---------------LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVD 333 (357)
T ss_pred EEEEECCHHHHHHHHHHHhhhC---------------CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccC
Confidence 9999999999999999998741 14567889999999998754 37899999999999999
Q ss_pred CCCCcEEEEecCCCChhHHHhhhcccc
Q 007774 402 FPKVKCIIQYDSAGEATEYVHRVGRTA 428 (590)
Q Consensus 402 ip~v~~VI~~d~p~s~~~yiqr~GRt~ 428 (590)
+|.+ +|| ++ |.+.+.|+||+||||
T Consensus 334 i~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 334 FKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9987 666 55 899999999999997
No 70
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=5.5e-35 Score=307.66 Aligned_cols=385 Identities=19% Similarity=0.240 Sum_probs=250.2
Q ss_pred CCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 25 l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
+++.....+. --+.-.+++||.+.+..+| |+|+||++|||+|||+++...|.+++... ...++|+++||+-
T Consensus 47 ~~~s~~~~~~-~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-------p~~KiVF~aP~~p 117 (746)
T KOG0354|consen 47 LDESAAQRWI-YPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR-------PKGKVVFLAPTRP 117 (746)
T ss_pred CChhhhcccc-ccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC-------CcceEEEeeCCch
Confidence 4444444431 1133359999999998888 99999999999999999999999998662 3478999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhc
Q 007774 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (590)
Q Consensus 105 La~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~ 184 (590)
|+.|....+..++.+ + ......||.....-...+-...+|+|+||..+.+-|.+.....++.+.++||||||+....
T Consensus 118 Lv~QQ~a~~~~~~~~--~-~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn 194 (746)
T KOG0354|consen 118 LVNQQIACFSIYLIP--Y-SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKN 194 (746)
T ss_pred HHHHHHHHHhhccCc--c-cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccccc
Confidence 999999777777654 2 2334445544333344555678999999999999888755555789999999999997754
Q ss_pred C-chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCC-----CC----c
Q 007774 185 G-FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP-----ED----K 254 (590)
Q Consensus 185 g-f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~-----~~----~ 254 (590)
. |...+...+..-.. ..|++++|||+....+........-..-+.+...... .. .
T Consensus 195 ~~Y~~Vmr~~l~~k~~---------------~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~ 259 (746)
T KOG0354|consen 195 HPYNNIMREYLDLKNQ---------------GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQ 259 (746)
T ss_pred ccHHHHHHHHHHhhhc---------------cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCc
Confidence 3 44555455444332 3499999999986544443322110000111000000 00 0
Q ss_pred ccccc------------------------cCccccchhh--ccC---------CCcccc---------------------
Q 007774 255 SHVRF------------------------GSLESDVKEE--VEH---------PSTTMR--------------------- 278 (590)
Q Consensus 255 ~~~~~------------------------~~~~~~~~~~--~~~---------~~~~~~--------------------- 278 (590)
....+ ..+....... .+. ......
T Consensus 260 i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~ 339 (746)
T KOG0354|consen 260 IPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLIS 339 (746)
T ss_pred ccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhh
Confidence 00000 0000000000 000 000000
Q ss_pred cc-------------ccccCCcc----------------cce--eEEEEec--CCChHHHHHHHHHhhhcccCCceEEEE
Q 007774 279 ST-------------TEDFKLPA----------------QLV--QRYVKVP--CGSRLAVLLSILKHLFDTEVSQKLVVF 325 (590)
Q Consensus 279 ~~-------------~~~~~~~~----------------~l~--~~~~~~~--~~~k~~~L~~~l~~~~~~~~~~k~iVF 325 (590)
+. ..+...-. .+. +.+...+ ...|+..|...+.+.+...+..++|||
T Consensus 340 ~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIF 419 (746)
T KOG0354|consen 340 DGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIF 419 (746)
T ss_pred cchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEE
Confidence 00 00000000 000 0111112 256888999999888877778899999
Q ss_pred ecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCC
Q 007774 326 FSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV 405 (590)
Q Consensus 326 ~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v 405 (590)
+.++++|..+..+|..+... . .....+.|..-..-..+|+|+++.+++++|++|++.|||||+|+++|||++.|
T Consensus 420 ve~R~sa~~l~~~l~~~~~~-~-----ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec 493 (746)
T KOG0354|consen 420 VETRESALALKKWLLQLHEL-G-----IKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGEC 493 (746)
T ss_pred EehHHHHHHHHHHHHhhhhc-c-----cccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccc
Confidence 99999999999998752110 0 00112223332333358999999999999999999999999999999999999
Q ss_pred cEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 406 KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 406 ~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
+.||.||.-.++...+||.|| ||+ +.|.+++++...+
T Consensus 494 ~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 494 NLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred cEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 999999999999999999999 998 5688888877543
No 71
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=314.93 Aligned_cols=365 Identities=23% Similarity=0.286 Sum_probs=264.7
Q ss_pred CCCHHHHHHHHHhCCCCCCcHHHHHHHHHH-hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc
Q 007774 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVI-LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (590)
Q Consensus 24 ~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~i-l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt 102 (590)
.+++.+...+. ..|+.++.+.|+.++... ..++|+||++|||||||+.+++.++..+.. .+.++|++||+
T Consensus 15 ~~~~~v~~i~~-~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivPl 85 (766)
T COG1204 15 KLDDRVLEILK-GDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVPL 85 (766)
T ss_pred cccHHHHHHhc-cCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeCh
Confidence 36788888884 558888999999998664 466999999999999999999999999875 25779999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhh
Q 007774 103 RELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (590)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll 182 (590)
|+||.|.++.++.+-. + .+.++..+|+.....++ -.+++|+|+||+++-..+.+... .+..+++||+||+|.+.
T Consensus 86 kALa~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 86 KALAEEKYEEFSRLEE-L-GIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLG 159 (766)
T ss_pred HHHHHHHHHHhhhHHh-c-CCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecC
Confidence 9999999999994433 3 47788888887655422 25689999999999988887655 66899999999999888
Q ss_pred hcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCc
Q 007774 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSL 262 (590)
Q Consensus 183 ~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~ 262 (590)
|...+..++.|+..+...+ ...|++++|||+|+ ...++.+.-.++..-......+
T Consensus 160 d~~RG~~lE~iv~r~~~~~------------~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l------------ 214 (766)
T COG1204 160 DRTRGPVLESIVARMRRLN------------ELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPL------------ 214 (766)
T ss_pred CcccCceehhHHHHHHhhC------------cceEEEEEeeecCC-HHHHHHHhCCcccccCCCCccc------------
Confidence 8878899999998887643 13799999999987 5566665544443211111110
Q ss_pred cccchhhccCCCccccccccccCCcccceeEEEEecCCC------hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 263 ESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS------RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
.-+....+.+....... +...+...+.... ..++.++|||+|+..+...+
T Consensus 215 ----------------------~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A 270 (766)
T COG1204 215 ----------------------RRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTA 270 (766)
T ss_pred ----------------------ccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHH
Confidence 00111112222222111 2233333333333 34789999999999999888
Q ss_pred HhhhhccCC---CC------CCC------------hhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc
Q 007774 337 SLLSEFQWS---PH------SQP------------DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (590)
Q Consensus 337 ~~l~~~~~~---~~------~~~------------~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv 395 (590)
..+...... .. ... +.+...++ ...+...|++|+..+|..+.+.|++|.++||+||+.
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v-~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpT 349 (766)
T COG1204 271 KKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELV-LRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPT 349 (766)
T ss_pred HHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHH-HhCccccccCCCHHHHHHHHHHHhcCCceEEEechH
Confidence 888731111 00 000 01222233 345778899999999999999999999999999999
Q ss_pred cccCCCCCCCcEEE----Eec-----CCCChhHHHhhhccccCCC--CCccEEEEeCc-cchHHHHHHHH
Q 007774 396 AARGLDFPKVKCII----QYD-----SAGEATEYVHRVGRTARLG--ERGDSLLFLQP-VEMDYLQDLEK 453 (590)
Q Consensus 396 ~~rGlDip~v~~VI----~~d-----~p~s~~~yiqr~GRt~R~g--~~g~~i~~l~~-~e~~~~~~l~~ 453 (590)
++.|+|+|.-.+|| -|| .+-++.+|+|+.||+||-| ..|.++++... .+..++.....
T Consensus 350 LA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~ 419 (766)
T COG1204 350 LAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYI 419 (766)
T ss_pred HhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhh
Confidence 99999999888877 566 5568999999999999987 56788888744 44555444443
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2e-34 Score=319.93 Aligned_cols=352 Identities=25% Similarity=0.295 Sum_probs=260.8
Q ss_pred CCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 25 l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
....+..++.+. |+..++.||.+|+..+.+|+|++|..+||||||++|++||++.+... ...++|+|.||++
T Consensus 55 ~~~~l~~~l~~~-g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~-------~~a~AL~lYPtnA 126 (851)
T COG1205 55 RDESLKSALVKA-GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD-------PSARALLLYPTNA 126 (851)
T ss_pred hhhHHHHHHHHh-ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC-------cCccEEEEechhh
Confidence 345567777554 88889999999999999999999999999999999999999999873 3347999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH-HHhcCCCcEEEECChHHHHHHhc-cCC--CCCCceeEEEEechhh
Q 007774 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK-ARLRKGISILVATPGRLLDHLKH-TSS--FLHTNLRWIIFDEADR 180 (590)
Q Consensus 105 La~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~IlV~Tp~rl~~~l~~-~~~--~~~~~l~~lVlDEah~ 180 (590)
||+.+.+.+.++...++..+....+.|+....++ +..++.++||++||..|..++.. ... +.+.++++||+||+|-
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 9999999999999877733333444455554444 66678899999999999874433 222 3567899999999994
Q ss_pred hhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccccccc
Q 007774 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFG 260 (590)
Q Consensus 181 ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~ 260 (590)
..-.|+..+..++++|..... ..+...|+++.|||+.+..+.........-... ++...
T Consensus 207 -YrGv~GS~vA~llRRL~~~~~--------~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g----------- 265 (851)
T COG1205 207 -YRGVQGSEVALLLRRLLRRLR--------RYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDG----------- 265 (851)
T ss_pred -ccccchhHHHHHHHHHHHHHh--------ccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCC-----------
Confidence 555688888888888875321 122378999999999876665555444333331 22221
Q ss_pred CccccchhhccCCCccccccccccCCcccceeEEEEec---------CCChHHHHHHHHHhhhcccCCceEEEEecchhh
Q 007774 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP---------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (590)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~ 331 (590)
.|..........+ -......+..+..... ..+-++|+|+.++..
T Consensus 266 -------------------------~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~--~~~~~tL~F~~sr~~ 318 (851)
T COG1205 266 -------------------------SPRGLRYFVRREPPIRELAESIRRSALAELATLAALLV--RNGIQTLVFFRSRKQ 318 (851)
T ss_pred -------------------------CCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHH--HcCceEEEEEehhhh
Confidence 1222233322222 1233444444444433 346899999999999
Q ss_pred HHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEe
Q 007774 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (590)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~ 411 (590)
++.++.-......... ......+..++|+|...+|.++...|+.|+..++++|..++-|+|+.++++||.+
T Consensus 319 ~e~~~~~~~~~~~~~~---------~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~ 389 (851)
T COG1205 319 VELLYLSPRRRLVREG---------GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAY 389 (851)
T ss_pred hhhhhhchhHHHhhcc---------hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhc
Confidence 9998743322110000 0113468889999999999999999999999999999999999999999999999
Q ss_pred cCCC-ChhHHHhhhccccCCCCCccEEEEeC
Q 007774 412 DSAG-EATEYVHRVGRTARLGERGDSLLFLQ 441 (590)
Q Consensus 412 d~p~-s~~~yiqr~GRt~R~g~~g~~i~~l~ 441 (590)
+.|. +..+++||.||+||.++.+..++.+.
T Consensus 390 g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 390 GYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999 89999999999999996665555554
No 73
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.8e-35 Score=291.00 Aligned_cols=346 Identities=23% Similarity=0.266 Sum_probs=272.6
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
+..+.++|.+++++...|+ ..|++.+.|+|..++.. ++.|+|.+|.++|+||||++.-++=+..++. .|.
T Consensus 192 ~r~~vdeLdipe~fk~~lk-~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~ 262 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLK-REGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGK 262 (830)
T ss_pred ccccccccCCcHHHHHHHH-hcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCC
Confidence 3457889999999999995 56999999999999966 7899999999999999999998887777764 477
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH----HHhcCCCcEEEECChHHHHHHhccCCCCCCce
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK----ARLRKGISILVATPGRLLDHLKHTSSFLHTNL 170 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~----~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l 170 (590)
+.|+|+|..+||+|-++.++.-..++. +.+..-+|........ .......||||+|++-+-.+|... -.+.++
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~Lg-lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdi 339 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLG-LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDI 339 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhccc-ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--Cccccc
Confidence 899999999999999999998776554 4455555544333221 112235799999999987777654 566899
Q ss_pred eEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCC
Q 007774 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250 (590)
Q Consensus 171 ~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~ 250 (590)
+.+|+||+|.|-|...+.-+..++.++.... +..|.+.+|||..++ +.+++..-.+++.+.-
T Consensus 340 GtVVIDEiHtL~deERG~RLdGLI~RLr~l~------------~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~----- 401 (830)
T COG1202 340 GTVVIDEIHTLEDEERGPRLDGLIGRLRYLF------------PGAQFIYLSATVGNP-EELAKKLGAKLVLYDE----- 401 (830)
T ss_pred ceEEeeeeeeccchhcccchhhHHHHHHHhC------------CCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----
Confidence 9999999999988778888888877776532 268999999998765 4445443333443322
Q ss_pred CCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEec-CCChHHHHHHHHHhhhcc----cCCceEEEE
Q 007774 251 PEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDT----EVSQKLVVF 325 (590)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~k~~~L~~~l~~~~~~----~~~~k~iVF 325 (590)
-|-.+..+.+.+. ..+|...+..+.+..+.. ...+.+|||
T Consensus 402 -----------------------------------RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVF 446 (830)
T COG1202 402 -----------------------------------RPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVF 446 (830)
T ss_pred -----------------------------------CCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEE
Confidence 1334555666666 567888888887766532 234689999
Q ss_pred ecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCC
Q 007774 326 FSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV 405 (590)
Q Consensus 326 ~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v 405 (590)
++|+..|.+++..|... |+.+..+|++|+..+|..+...|.+++..++|+|-.++.|+|||.-
T Consensus 447 T~SRrr~h~lA~~L~~k-----------------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPAS 509 (830)
T COG1202 447 TYSRRRCHELADALTGK-----------------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPAS 509 (830)
T ss_pred ecchhhHHHHHHHhhcC-----------------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchH
Confidence 99999999999999876 7888899999999999999999999999999999999999999976
Q ss_pred cEEE---EecCC-CChhHHHhhhccccCCC--CCccEEEEeCcc
Q 007774 406 KCII---QYDSA-GEATEYVHRVGRTARLG--ERGDSLLFLQPV 443 (590)
Q Consensus 406 ~~VI---~~d~p-~s~~~yiqr~GRt~R~g--~~g~~i~~l~~~ 443 (590)
.+|+ -++.- -++.+|.|+.||+||-+ ..|.+++++.|.
T Consensus 510 QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 510 QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 6544 23333 38999999999999987 468888888763
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-34 Score=311.19 Aligned_cols=347 Identities=16% Similarity=0.172 Sum_probs=224.7
Q ss_pred CCcHHHHHHHHHHhc-C--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILS-G--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~-g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
.++|||++++..+.. | +..++++|||+|||++.+..+... +..+|||||+.+|+.||.+.+.++.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 489999999988774 3 478999999999999987655432 2459999999999999999999885
Q ss_pred hhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc-------CCCCCCceeEEEEechhhhhhcCchHHH
Q 007774 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT-------SSFLHTNLRWIIFDEADRILELGFGKEI 190 (590)
Q Consensus 118 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-------~~~~~~~l~~lVlDEah~ll~~gf~~~l 190 (590)
. .....++.++|+.... ......|+|+|+..+....... ..+.-..+++||+||||++.. ...
T Consensus 323 ~-l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~f 392 (732)
T TIGR00603 323 T-IDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMF 392 (732)
T ss_pred C-CCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHH
Confidence 4 3334455566553221 1223679999998774322111 112224688999999999854 344
Q ss_pred HHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHh-hcCCCEEEecCCCCCCCCcccccccCccccchhh
Q 007774 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI-SLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269 (590)
Q Consensus 191 ~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~-~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (590)
..++..++ ....+++|||+...-.....+ .+-.|..+......+........+......+.-.
T Consensus 393 r~il~~l~----------------a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t 456 (732)
T TIGR00603 393 RRVLTIVQ----------------AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMT 456 (732)
T ss_pred HHHHHhcC----------------cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCC
Confidence 55666664 355699999986322221111 2233554444332221111111111000000000
Q ss_pred ccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCC
Q 007774 270 VEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ 349 (590)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~ 349 (590)
.+. ...+.....-...........|+..+..+++.+- ..+.++||||.+++.++.++..|.
T Consensus 457 ~~~--------~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he--~~g~kiLVF~~~~~~l~~~a~~L~--------- 517 (732)
T TIGR00603 457 PEF--------YREYLRENSRKRMLLYVMNPNKFRACQFLIRFHE--QRGDKIIVFSDNVFALKEYAIKLG--------- 517 (732)
T ss_pred HHH--------HHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHh--hcCCeEEEEeCCHHHHHHHHHHcC---------
Confidence 000 0000000000001112234567777777776542 357899999999998888877662
Q ss_pred ChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhcc-CccEEEeccccccCCCCCCCcEEEEecCC-CChhHHHhhhccc
Q 007774 350 PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALLLSTDVAARGLDFPKVKCIIQYDSA-GEATEYVHRVGRT 427 (590)
Q Consensus 350 ~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~-~~~vLiaTdv~~rGlDip~v~~VI~~d~p-~s~~~yiqr~GRt 427 (590)
+..+||++++.+|.+++++|+.| ...+||+|+++.+|+|+|++++||+++.| .|..+|+||+||+
T Consensus 518 -------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRi 584 (732)
T TIGR00603 518 -------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRI 584 (732)
T ss_pred -------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhccc
Confidence 23489999999999999999975 78999999999999999999999999988 5999999999999
Q ss_pred cCCCCCccE-------EEEeCccc--hHH----HHHHHHcCCC
Q 007774 428 ARLGERGDS-------LLFLQPVE--MDY----LQDLEKHGVS 457 (590)
Q Consensus 428 ~R~g~~g~~-------i~~l~~~e--~~~----~~~l~~~~~~ 457 (590)
+|.+..|.+ +.|+++.. ..| -++|.+.|-.
T Consensus 585 lR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY~ 627 (732)
T TIGR00603 585 LRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGYS 627 (732)
T ss_pred ccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCCCe
Confidence 999887765 67777754 333 3455555544
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.1e-32 Score=300.79 Aligned_cols=336 Identities=21% Similarity=0.253 Sum_probs=222.1
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSG---RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g---~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
.+|+.|+++++.+..+ +++++.|+||||||.+|+.++.+.+.. |.++|||+||++|+.|+.+.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 4899999999999874 789999999999999999988877643 5679999999999999999998763
Q ss_pred hhcCCcceEEEEcCCchHHHH---HHhc-CCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCc------h
Q 007774 118 HRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF------G 187 (590)
Q Consensus 118 ~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf------~ 187 (590)
. ..+..++||.+..... ..+. ..++|+||||+.++ ..+.+++++|+||+|...-... .
T Consensus 215 g----~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 215 G----APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred C----CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 2 4566778776654433 2333 45899999999874 2357899999999997542211 1
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccch
Q 007774 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVK 267 (590)
Q Consensus 188 ~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (590)
.++....... ...+++++|||++......+.. +....+.........
T Consensus 283 r~va~~ra~~----------------~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~--------------- 329 (679)
T PRK05580 283 RDLAVVRAKL----------------ENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGA--------------- 329 (679)
T ss_pred HHHHHHHhhc----------------cCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccC---------------
Confidence 2222222222 1689999999987544433321 122222222211000
Q ss_pred hhccCCCccccccccccCCcccceeEEEEec------C-CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhh
Q 007774 268 EEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP------C-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (590)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~-~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~ 340 (590)
..|. -..+... . ..-...+...+++.+ ..+.++|||+|++..+-++...-+
T Consensus 330 -----------------~~p~---v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~C 387 (679)
T PRK05580 330 -----------------RLPE---VEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDC 387 (679)
T ss_pred -----------------CCCe---EEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhC
Confidence 0010 0000000 0 001134555566554 346789999886433222111111
Q ss_pred h-------------------------ccCC------C---C-----------CCChhHHHhhhcCcceEeccCCCCh--H
Q 007774 341 E-------------------------FQWS------P---H-----------SQPDMELKQLFLRCKTFRLHGNMKQ--E 373 (590)
Q Consensus 341 ~-------------------------~~~~------~---~-----------~~~~~~~~~~~~~~~v~~lhg~~~~--~ 373 (590)
. ++.. + + ....+++...+|+.++..+|+++.+ .
T Consensus 388 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~ 467 (679)
T PRK05580 388 GWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKG 467 (679)
T ss_pred cCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccch
Confidence 1 0000 0 0 0114566678999999999999975 5
Q ss_pred HHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecC--CCCh----------hHHHhhhccccCCCCCccEEEEeC
Q 007774 374 DRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS--AGEA----------TEYVHRVGRTARLGERGDSLLFLQ 441 (590)
Q Consensus 374 ~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~--p~s~----------~~yiqr~GRt~R~g~~g~~i~~l~ 441 (590)
++.+++++|++|+.+|||+|+++++|+|+|+|++|+.+|. +-+. ..|+|++||+||.+..|.+++...
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 7899999999999999999999999999999999965554 4332 578999999999999999998776
Q ss_pred ccchHHHHHHH
Q 007774 442 PVEMDYLQDLE 452 (590)
Q Consensus 442 ~~e~~~~~~l~ 452 (590)
..+...++.+.
T Consensus 548 ~p~~~~~~~~~ 558 (679)
T PRK05580 548 HPEHPVIQALL 558 (679)
T ss_pred CCCCHHHHHHH
Confidence 55544444443
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=7.9e-32 Score=279.84 Aligned_cols=349 Identities=23% Similarity=0.295 Sum_probs=269.4
Q ss_pred CCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 007774 22 SLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (590)
Q Consensus 22 ~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~ 95 (590)
.++.+..++..+.+.++|. +|.-|++++..|... .+=|+++..|||||+++++.++..+. .|.+
T Consensus 244 ~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---------~G~Q 313 (677)
T COG1200 244 PLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---------AGYQ 313 (677)
T ss_pred CCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------cCCe
Confidence 3456677788887889998 999999999999853 35599999999999999999999874 4888
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH---HHHhcCC-CcEEEECChHHHHHHhccCCCCCCcee
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLR 171 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~ 171 (590)
+.+++||--||.|.++.+.+++.+++ +.++.++|....+.. .+.+..| .+|+|||..-+.+ ...+.++.
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd------~V~F~~Lg 386 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD------KVEFHNLG 386 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc------ceeeccee
Confidence 99999999999999999999999776 778888887665544 3455566 9999999765533 34567999
Q ss_pred EEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCC
Q 007774 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (590)
Q Consensus 172 ~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~ 251 (590)
++|+||-|| |+-.-+..+..-... .+..+.||||+=+..-.+...+.-+-..|
T Consensus 387 LVIiDEQHR-----FGV~QR~~L~~KG~~--------------~Ph~LvMTATPIPRTLAlt~fgDldvS~I-------- 439 (677)
T COG1200 387 LVIIDEQHR-----FGVHQRLALREKGEQ--------------NPHVLVMTATPIPRTLALTAFGDLDVSII-------- 439 (677)
T ss_pred EEEEecccc-----ccHHHHHHHHHhCCC--------------CCcEEEEeCCCchHHHHHHHhccccchhh--------
Confidence 999999999 888888877766421 47889999997443333332221111111
Q ss_pred CCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhh
Q 007774 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~ 331 (590)
-.+|.........+-...+...++..++..+. .+..+.|.|+-.++
T Consensus 440 --------------------------------dElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~--~GrQaY~VcPLIeE 485 (677)
T COG1200 440 --------------------------------DELPPGRKPITTVVIPHERRPEVYERIREEIA--KGRQAYVVCPLIEE 485 (677)
T ss_pred --------------------------------ccCCCCCCceEEEEeccccHHHHHHHHHHHHH--cCCEEEEEeccccc
Confidence 01233332222333345677777778877663 57899999998765
Q ss_pred HH--------HHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCC
Q 007774 332 VD--------FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP 403 (590)
Q Consensus 332 ~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip 403 (590)
.+ ..++.|+ ..+++..+..+||+|+..++.+++++|++|+.+|||||.|.+.|+|+|
T Consensus 486 SE~l~l~~a~~~~~~L~---------------~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 486 SEKLELQAAEELYEELK---------------SFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred cccchhhhHHHHHHHHH---------------HHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCC
Confidence 54 3444444 357789999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-ChhHHHhhhccccCCCCCccEEEEeCccc----hHHHHHHHHc--CCCCccccc
Q 007774 404 KVKCIIQYDSAG-EATEYVHRVGRTARLGERGDSLLFLQPVE----MDYLQDLEKH--GVSLTEYPL 463 (590)
Q Consensus 404 ~v~~VI~~d~p~-s~~~yiqr~GRt~R~g~~g~~i~~l~~~e----~~~~~~l~~~--~~~~~~~~~ 463 (590)
+.+++|..++-. -.++.-|-.||+||.+....|+++..+.. ...++.+.+. |+.|.|.++
T Consensus 551 nATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DL 617 (677)
T COG1200 551 NATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDL 617 (677)
T ss_pred CCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhH
Confidence 999999998765 57777788899999999999999998865 4667777765 777777665
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=3.3e-32 Score=306.37 Aligned_cols=307 Identities=20% Similarity=0.301 Sum_probs=208.2
Q ss_pred HHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcC----cHHHHHHHHHHHHHHHhh
Q 007774 44 KVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP----TRELCLQVYEILHKLLHR 119 (590)
Q Consensus 44 ~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~P----treLa~Q~~~~~~~~~~~ 119 (590)
.+-.+.++.+..+..++|.|+||||||. .+|.+-.-.. ++....+++.-| +++||.|+.+++..-+.
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG- 147 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG------RGVKGLIGHTQPRRLAARTVANRIAEELETELG- 147 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc-
Confidence 3444555666677778999999999998 4674322111 111122333446 46888888887764211
Q ss_pred cCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechh-hhhhcCchHHHHHHHHHhc
Q 007774 120 FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD-RILELGFGKEIEEILDILG 198 (590)
Q Consensus 120 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah-~ll~~gf~~~l~~il~~l~ 198 (590)
..+|+-+..++ ....+++|+++|||+|++++.... .++++++||||||| ++++.+|.-. .+...++
T Consensus 148 ---~~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~lL~ 214 (1294)
T PRK11131 148 ---GCVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILG--YLKELLP 214 (1294)
T ss_pred ---ceeceeecCcc------ccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchHHH--HHHHhhh
Confidence 12233222111 123568999999999999987643 37899999999999 6889888642 2222333
Q ss_pred cCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCcccc
Q 007774 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMR 278 (590)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (590)
.. +..|+++||||++. +.+...+...|. +.+....
T Consensus 215 ~r-------------pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~----------------------------- 249 (1294)
T PRK11131 215 RR-------------PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT----------------------------- 249 (1294)
T ss_pred cC-------------CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc-----------------------------
Confidence 21 16899999999964 566666555554 3333221
Q ss_pred ccccccCCcccceeEEEEecC------CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChh
Q 007774 279 STTEDFKLPAQLVQRYVKVPC------GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDM 352 (590)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~------~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~ 352 (590)
+ | +...|..... ...+..+...+..+. ....+.+|||+++...++.+++.|....
T Consensus 250 -----~--p--Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~--------- 310 (1294)
T PRK11131 250 -----Y--P--VEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLN--------- 310 (1294)
T ss_pred -----c--c--ceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcC---------
Confidence 0 0 1122222211 122333443333332 2346799999999999999999998752
Q ss_pred HHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEec---------------CC---
Q 007774 353 ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD---------------SA--- 414 (590)
Q Consensus 353 ~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d---------------~p--- 414 (590)
++...+..+||+|++.+|.++++. .|..+||||||++++|||+|+|++||++| +|
T Consensus 311 -----~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~ 383 (1294)
T PRK11131 311 -----LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEP 383 (1294)
T ss_pred -----CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeee
Confidence 224568899999999999999986 47889999999999999999999999986 33
Q ss_pred CChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 415 GEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 415 ~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
-|.++|+||+|||||. ..|.|+.++++.+
T Consensus 384 iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 384 ISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred cCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 3558999999999999 6899999998765
No 78
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4e-32 Score=302.06 Aligned_cols=376 Identities=19% Similarity=0.230 Sum_probs=230.7
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
.|.|||...+..++.. ..+|+..++|.|||+.+.+.+-+.+.. +...++|||||+ .|..||..++.+...
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 4899999998777643 479999999999999998766665543 334579999998 899999999876532
Q ss_pred hcCCcceEEEEcCCchHHHHH---HhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhc-CchHHHHHHH
Q 007774 119 RFHWIVPGYVMGGENRSKEKA---RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL-GFGKEIEEIL 194 (590)
Q Consensus 119 ~~~~~~~~~~~gg~~~~~~~~---~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~-gf~~~l~~il 194 (590)
+.. .+.++........ ..-...+++|+|.+.+...-.....+.-..+++||+||||++-.. +-.......+
T Consensus 224 ----l~~-~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 224 ----LRF-SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred ----CCe-EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 112 2333332211110 011235799999987764211101122247899999999998632 1111223344
Q ss_pred HHhccCCCCCCCCCCCccccCceEEEEeecccc-hHH-HHHHhhcCCCEEEecCCCCCC-----------------CCc-
Q 007774 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVN-HLAKISLETPVLIGLDEKKLP-----------------EDK- 254 (590)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~-~~~-~l~~~~l~~p~~i~~~~~~~~-----------------~~~- 254 (590)
..+... ....+++||||-. ..+ .+..+.+-+|..+........ ...
T Consensus 299 ~~La~~--------------~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~ 364 (956)
T PRK04914 299 EQLAEV--------------IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKL 364 (956)
T ss_pred HHHhhc--------------cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcC
Confidence 444321 4578999999853 222 233333334433211100000 000
Q ss_pred cc---ccccCc-c-ccchhh----------------------ccCCCc-----cc-ccccccc----------CCc----
Q 007774 255 SH---VRFGSL-E-SDVKEE----------------------VEHPST-----TM-RSTTEDF----------KLP---- 287 (590)
Q Consensus 255 ~~---~~~~~~-~-~~~~~~----------------------~~~~~~-----~~-~~~~~~~----------~~~---- 287 (590)
.. ...... . ...... .....+ .. ......+ ..|
T Consensus 365 ~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~ 444 (956)
T PRK04914 365 SDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQ 444 (956)
T ss_pred CHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHH
Confidence 00 000000 0 000000 000000 00 0000000 000
Q ss_pred -----------------ccceeEE----EEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCC
Q 007774 288 -----------------AQLVQRY----VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP 346 (590)
Q Consensus 288 -----------------~~l~~~~----~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~ 346 (590)
..+.+.+ .......|+..|..+++.. .+.|+||||+++..+.++.+.|....
T Consensus 445 ~~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~----~~~KvLVF~~~~~t~~~L~~~L~~~~--- 517 (956)
T PRK04914 445 TAIKVSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH----RSEKVLVICAKAATALQLEQALRERE--- 517 (956)
T ss_pred HHHHHhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc----CCCeEEEEeCcHHHHHHHHHHHhhcc---
Confidence 0000000 0122345677777777653 36899999999999999999995321
Q ss_pred CCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhcc--CccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhh
Q 007774 347 HSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE--KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRV 424 (590)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~--~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~ 424 (590)
|+.+..+||+|++.+|.++++.|+++ ...|||||+++++|+|++.+++||+||+|+++..|+||+
T Consensus 518 -------------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRI 584 (956)
T PRK04914 518 -------------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRI 584 (956)
T ss_pred -------------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHh
Confidence 78899999999999999999999984 589999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEeCccc---hHHHHHHHHcCCCCccccc
Q 007774 425 GRTARLGERGDSLLFLQPVE---MDYLQDLEKHGVSLTEYPL 463 (590)
Q Consensus 425 GRt~R~g~~g~~i~~l~~~e---~~~~~~l~~~~~~~~~~~~ 463 (590)
||++|.|+.|.+.+++...+ ...+..+...++++.+..+
T Consensus 585 GR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~ 626 (956)
T PRK04914 585 GRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTC 626 (956)
T ss_pred cccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccC
Confidence 99999999998877765543 4555555556666555443
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-32 Score=266.45 Aligned_cols=346 Identities=21% Similarity=0.262 Sum_probs=249.7
Q ss_pred HHHHHHHHHhCCCCCC-cHHHHHHHHHHhc-CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 27 STLCDQLRERLGFEAP-TKVQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 27 ~~l~~~l~~~~g~~~~-t~~Q~~~i~~il~-g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
..+-.+|++.||+... ++.|++|+..+.. .+||.|++|||+||+|||-+|.+-. +.-.||++|..+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiA 72 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIA 72 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHH
Confidence 3567788888999864 8999999988775 4699999999999999999999853 236899999999
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhcCCCcEEEECChHH-----HHHHhccCCCCCCceeEEEEe
Q 007774 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLRKGISILVATPGRL-----LDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 105 La~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~IlV~Tp~rl-----~~~l~~~~~~~~~~l~~lVlD 176 (590)
|...+.+.+..+--+...+..- + ....++... ++.+....++..||+.- .++|+. ...-..+.|+|+|
T Consensus 73 LIkDQiDHL~~LKVp~~SLNSK-l-St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 73 LIKDQIDHLKRLKVPCESLNSK-L-STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHHHHhcCCchhHhcch-h-hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEec
Confidence 9999888888763322111110 0 001111111 22234467899999753 222221 1123578999999
Q ss_pred chhhhhhcC--chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHH--HHHhhcCCCEEEecCCCCCCC
Q 007774 177 EADRILELG--FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH--LAKISLETPVLIGLDEKKLPE 252 (590)
Q Consensus 177 Eah~ll~~g--f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~--l~~~~l~~p~~i~~~~~~~~~ 252 (590)
|||....|| |..+.-.+=.. .... .....+.++||-+..+++ ...+.|++|+.+.-.+..-.+
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~L-RS~~------------~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N 215 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGSL-RSVC------------PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN 215 (641)
T ss_pred hhhhHhhhccccCcchhhhhhH-HhhC------------CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh
Confidence 999999987 55555443221 1111 156779999999988876 445677888776443322111
Q ss_pred CcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhc---------ccCCceEE
Q 007774 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFD---------TEVSQKLV 323 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~---------~~~~~k~i 323 (590)
....+.+.. ...+-+..|..+....+. ....+..|
T Consensus 216 LFYD~~~K~------------------------------------~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGI 259 (641)
T KOG0352|consen 216 LFYDNHMKS------------------------------------FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGI 259 (641)
T ss_pred hhHHHHHHH------------------------------------HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceE
Confidence 111100000 011223344444444332 11235789
Q ss_pred EEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCC
Q 007774 324 VFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP 403 (590)
Q Consensus 324 VF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip 403 (590)
|||.|++.|+.++-.+... |++...+|.++...+|.++.+.+.+++..|++||...+.|+|-|
T Consensus 260 VYCRTR~~cEq~AI~l~~~-----------------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp 322 (641)
T KOG0352|consen 260 VYCRTRNECEQVAIMLEIA-----------------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKP 322 (641)
T ss_pred EEeccHHHHHHHHHHhhhc-----------------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCc
Confidence 9999999999999988765 88899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 404 KVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 404 ~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
+|.+|||+++|+|..-|.|-.||+||.|....|-+++...+..-+++|-+.
T Consensus 323 ~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 323 DVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred ceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 999999999999999999999999999999999999999998888887654
No 80
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-31 Score=294.88 Aligned_cols=338 Identities=22% Similarity=0.265 Sum_probs=259.8
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 28 ~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
.....+...||+...++-|.++|..++.|+|++|..|||.||++||-+|++-. +...|||+|..+|..
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHH
Confidence 57777777899999999999999999999999999999999999999998743 347899999999977
Q ss_pred HHHHHHHHHHhhcCCcceEEEEcCCchHH---HHHHhcCC---CcEEEECChHHHHHHhcc-CCCCCC---ceeEEEEec
Q 007774 108 QVYEILHKLLHRFHWIVPGYVMGGENRSK---EKARLRKG---ISILVATPGRLLDHLKHT-SSFLHT---NLRWIIFDE 177 (590)
Q Consensus 108 Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~---~~IlV~Tp~rl~~~l~~~-~~~~~~---~l~~lVlDE 177 (590)
.+...+.. ..+....+.++..... ..+.+..+ ++|+..||+.+...-.-. ....+. .+-++|+||
T Consensus 319 DQv~~L~~-----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDE 393 (941)
T KOG0351|consen 319 DQVTHLSK-----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDE 393 (941)
T ss_pred HHHHhhhh-----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecH
Confidence 76665532 2345555666555442 23444444 789999999874321110 011122 378899999
Q ss_pred hhhhhhcC--chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHH--HHhhcCCCEEEecCCCCCCCC
Q 007774 178 ADRILELG--FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL--AKISLETPVLIGLDEKKLPED 253 (590)
Q Consensus 178 ah~ll~~g--f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l--~~~~l~~p~~i~~~~~~~~~~ 253 (590)
||....|| |......+-....+.. ...++.+|||.+..++.- ..+.+.+|..+.....
T Consensus 394 AHCVSqWgHdFRp~Yk~l~~l~~~~~-------------~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfn----- 455 (941)
T KOG0351|consen 394 AHCVSQWGHDFRPSYKRLGLLRIRFP-------------GVPFIALTATATERVREDVIRSLGLRNPELFKSSFN----- 455 (941)
T ss_pred HHHhhhhcccccHHHHHHHHHHhhCC-------------CCCeEEeehhccHHHHHHHHHHhCCCCcceecccCC-----
Confidence 99999987 7777776655554322 478999999998877653 4456677775433222
Q ss_pred cccccccCccccchhhccCCCccccccccccCCcccceeEEEEecC--CChHHHHHHHHHhhhcccCCceEEEEecchhh
Q 007774 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC--GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (590)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~ 331 (590)
+.++. |.+.+. ......+...++.. .+...+||||.++.+
T Consensus 456 ---------------------------------R~NL~--yeV~~k~~~~~~~~~~~~~~~~---~~~~s~IIYC~sr~~ 497 (941)
T KOG0351|consen 456 ---------------------------------RPNLK--YEVSPKTDKDALLDILEESKLR---HPDQSGIIYCLSRKE 497 (941)
T ss_pred ---------------------------------CCCce--EEEEeccCccchHHHHHHhhhc---CCCCCeEEEeCCcch
Confidence 12222 222222 23333344444443 467899999999999
Q ss_pred HHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEe
Q 007774 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (590)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~ 411 (590)
++.+...|+.. +.....||++|+.++|..+...|..++.+|++||=+.+.|||.|+|..||||
T Consensus 498 ce~vs~~L~~~-----------------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 498 CEQVSAVLRSL-----------------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred HHHHHHHHHHh-----------------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEEC
Confidence 99999999988 6778889999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHcC
Q 007774 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHG 455 (590)
Q Consensus 412 d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~~ 455 (590)
..|.+.+.|.|-+||+||.|....|++|+...+..-+..+-..+
T Consensus 561 ~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 561 SLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999999888777776665
No 81
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=1.8e-30 Score=293.62 Aligned_cols=316 Identities=20% Similarity=0.276 Sum_probs=216.3
Q ss_pred CCCCCcHHHH---HHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 38 GFEAPTKVQA---QAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 38 g~~~~t~~Q~---~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
.|...-|+.. +.+..+..+..++|.|+||||||.. +|.+-.-.. +.....+++.-|.|.-|..++..+.
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~------~~~~~~I~~tQPRRlAA~svA~RvA 132 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG------RGSHGLIGHTQPRRLAARTVAQRIA 132 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC------CCCCceEecCCccHHHHHHHHHHHH
Confidence 4554455544 3445555677889999999999984 454332111 1122356667799988887776665
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechh-hhhhcCchHH-HHH
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD-RILELGFGKE-IEE 192 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah-~ll~~gf~~~-l~~ 192 (590)
+.........+|+-+..++. ...+..|.++|||+|+..+.... .+..+++||||||| +.++.+|.-. +..
T Consensus 133 ~elg~~lG~~VGY~vR~~~~------~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~LL~lLk~ 204 (1283)
T TIGR01967 133 EELGTPLGEKVGYKVRFHDQ------VSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDFLLGYLKQ 204 (1283)
T ss_pred HHhCCCcceEEeeEEcCCcc------cCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchhHHHHHHH
Confidence 54331111223332222221 13457899999999999987643 36799999999999 6898877643 555
Q ss_pred HHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccC
Q 007774 193 ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEH 272 (590)
Q Consensus 193 il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (590)
++...+ ..|+++||||++ .+.+...+...|+ +.+.....+
T Consensus 205 il~~rp----------------dLKlIlmSATld--~~~fa~~F~~apv-I~V~Gr~~P--------------------- 244 (1283)
T TIGR01967 205 LLPRRP----------------DLKIIITSATID--PERFSRHFNNAPI-IEVSGRTYP--------------------- 244 (1283)
T ss_pred HHhhCC----------------CCeEEEEeCCcC--HHHHHHHhcCCCE-EEECCCccc---------------------
Confidence 544433 689999999996 3567776655554 333322100
Q ss_pred CCccccccccccCCcccceeEEEEec------CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCC
Q 007774 273 PSTTMRSTTEDFKLPAQLVQRYVKVP------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP 346 (590)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~ 346 (590)
+...|.... ...+...+...+...+. ...+.+|||+++..+++.+++.|.....
T Consensus 245 -----------------Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~-- 304 (1283)
T TIGR01967 245 -----------------VEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNL-- 304 (1283)
T ss_pred -----------------ceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCC--
Confidence 011111111 11244555555555443 2457999999999999999999986522
Q ss_pred CCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCC-----------
Q 007774 347 HSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG----------- 415 (590)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~----------- 415 (590)
+++.++.+||+|++.+|.++++.+ +..+|||||+++++|||+|+|++||++|.+.
T Consensus 305 ------------~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 305 ------------RHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred ------------CCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 256789999999999999997665 3468999999999999999999999998543
Q ss_pred -------ChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 416 -------EATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 416 -------s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
|.++|.||+||+||.| .|.|+.+++..+
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHH
Confidence 5689999999999997 899999988654
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3e-30 Score=274.61 Aligned_cols=351 Identities=23% Similarity=0.281 Sum_probs=247.5
Q ss_pred hCCCCCCcHHHHHHHHHHh-cCCcEEEEccCcchHHHHHHHHHHHHHhhcCC-CCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSP-RIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~-~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
-++|..+..+|..+.|.+. ++.|.||+||||||||-.|++.|+..+..... .....++.++++|+|+++||.++.+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 4689999999999999987 56799999999999999999999999875322 222346789999999999999999888
Q ss_pred HHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc---CCCCCCceeEEEEechhhhhhcCchHHH
Q 007774 114 HKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT---SSFLHTNLRWIIFDEADRILELGFGKEI 190 (590)
Q Consensus 114 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~---~~~~~~~l~~lVlDEah~ll~~gf~~~l 190 (590)
.+-+.+++ +.+.-++|........ -..++|||+||+++- .+... ..-.++.+++||+||+|. +....+..+
T Consensus 185 ~kkl~~~g-i~v~ELTGD~ql~~te---i~~tqiiVTTPEKwD-vvTRk~~~d~~l~~~V~LviIDEVHl-Lhd~RGpvl 258 (1230)
T KOG0952|consen 185 SKKLAPLG-ISVRELTGDTQLTKTE---IADTQIIVTTPEKWD-VVTRKSVGDSALFSLVRLVIIDEVHL-LHDDRGPVL 258 (1230)
T ss_pred hhhccccc-ceEEEecCcchhhHHH---HHhcCEEEeccccee-eeeeeeccchhhhhheeeEEeeeehh-hcCcccchH
Confidence 77665444 6666777765543322 245799999999973 22221 123457899999999995 555588889
Q ss_pred HHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCC--EEEecCCCCCCCCcccccccCccccchh
Q 007774 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP--VLIGLDEKKLPEDKSHVRFGSLESDVKE 268 (590)
Q Consensus 191 ~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p--~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (590)
+.|+.+....- +....-.+++++|||+|+ .+.++.+.-.|| -...++...
T Consensus 259 EtiVaRtlr~v--------essqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~y------------------- 310 (1230)
T KOG0952|consen 259 ETIVARTLRLV--------ESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRY------------------- 310 (1230)
T ss_pred HHHHHHHHHHH--------HhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccc-------------------
Confidence 98888776321 112236899999999987 445555433332 122222221
Q ss_pred hccCCCccccccccccCCcccceeEEEEecCC---C--------hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 269 EVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG---S--------RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~--------k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
-|..+.+.++-++.. . ....+.+++. .+..++|||.++..+...++
T Consensus 311 -----------------RPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~------~g~qVlvFvhsR~~Ti~tA~ 367 (1230)
T KOG0952|consen 311 -----------------RPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ------EGHQVLVFVHSRNETIRTAK 367 (1230)
T ss_pred -----------------cccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH------cCCeEEEEEecChHHHHHHH
Confidence 244455555544433 1 1222222322 36899999999998888888
Q ss_pred hhhhccCCCCCC-------ChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEE-
Q 007774 338 LLSEFQWSPHSQ-------PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII- 409 (590)
Q Consensus 338 ~l~~~~~~~~~~-------~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI- 409 (590)
.|.+.....+.. .+....+++ ...+...|++|..++|.-+.+.|..|.+.||+||..++.|+|+|.--++|
T Consensus 368 ~l~~~a~~~g~~~~f~~~~~~k~l~elf-~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK 446 (1230)
T KOG0952|consen 368 KLRERAETNGEKDLFLPSPRNKQLKELF-QQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK 446 (1230)
T ss_pred HHHHHHHhcCcccccCCChhhHHHHHHH-HhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec
Confidence 876543322211 122333333 34567789999999999999999999999999999999999999876666
Q ss_pred ---EecCCC------ChhHHHhhhccccCC--CCCccEEEEeCccc
Q 007774 410 ---QYDSAG------EATEYVHRVGRTARL--GERGDSLLFLQPVE 444 (590)
Q Consensus 410 ---~~d~p~------s~~~yiqr~GRt~R~--g~~g~~i~~l~~~e 444 (590)
.||.-. ...+.+|..||+||- +..|.++++-+..-
T Consensus 447 GT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 447 GTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred CCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccH
Confidence 344333 567789999999995 46798888866544
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.4e-29 Score=280.19 Aligned_cols=339 Identities=17% Similarity=0.155 Sum_probs=206.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
..|+|+|+.+......+.-+++.||||+|||.+++..+...+.. ....++++..||+++++|+++.+.++...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 36999999886554456679999999999999998876654432 23467999999999999999999876553
Q ss_pred c-CCcceEEEEcCCchHHHH---------------------HHh---cCC---CcEEEECChHHHHHHhccCCCCCCce-
Q 007774 120 F-HWIVPGYVMGGENRSKEK---------------------ARL---RKG---ISILVATPGRLLDHLKHTSSFLHTNL- 170 (590)
Q Consensus 120 ~-~~~~~~~~~gg~~~~~~~---------------------~~l---~~~---~~IlV~Tp~rl~~~l~~~~~~~~~~l- 170 (590)
. ....+.+.+|........ +.+ ++. .+|+|||+..++.-....+...+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 223455555543211100 111 111 58999999988754433222222222
Q ss_pred ---eEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHH-HHHhhcCCCEEEecC
Q 007774 171 ---RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH-LAKISLETPVLIGLD 246 (590)
Q Consensus 171 ---~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~-l~~~~l~~p~~i~~~ 246 (590)
++|||||+|.. +.-....+..+++.+... ...+|+||||+|..... +...+-.... +..
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~--------------g~~vIllSATLP~~~r~~L~~a~~~~~~-~~~- 500 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA--------------GGSVILLSATLPATLKQKLLDTYGGHDP-VEL- 500 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhc--------------CCcEEEEeCCCCHHHHHHHHHHhccccc-ccc-
Confidence 47999999964 432344556666665432 56799999999987654 3332211100 000
Q ss_pred CCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEe
Q 007774 247 EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFF 326 (590)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~ 326 (590)
... |..+.......... ............+..+.-.............++..+.... ..+++++|||
T Consensus 501 ~~~---------YPlvt~~~~~~~~~--~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~ 567 (878)
T PRK09694 501 SSA---------YPLITWRGVNGAQR--FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLIC 567 (878)
T ss_pred ccc---------ccccccccccccee--eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEE
Confidence 000 00000000000000 0000000000011111100010111111123333333222 2467999999
Q ss_pred cchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHH----HHHHHHh-hccC---ccEEEecccccc
Q 007774 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR----RTTFGAF-KTEK---KALLLSTDVAAR 398 (590)
Q Consensus 327 ~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R----~~~~~~F-~~~~---~~vLiaTdv~~r 398 (590)
||++.++.+++.|+.... ....+..+||+++..+| .++++.| ++|+ ..|||||+++++
T Consensus 568 NTV~~Aq~ly~~L~~~~~--------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~ 633 (878)
T PRK09694 568 NLVDDAQKLYQRLKELNN--------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQ 633 (878)
T ss_pred CCHHHHHHHHHHHHhhCC--------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhh
Confidence 999999999999986421 13578999999999999 4578888 5565 479999999999
Q ss_pred CCCCCCCcEEEEecCCCChhHHHhhhccccCCCC
Q 007774 399 GLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGE 432 (590)
Q Consensus 399 GlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~ 432 (590)
|||+ +++++|....| .+.|+||+||++|.++
T Consensus 634 GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 634 SLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 68999998888 7899999999999986
No 84
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=5.7e-30 Score=243.31 Aligned_cols=202 Identities=44% Similarity=0.709 Sum_probs=178.2
Q ss_pred ccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEE
Q 007774 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (590)
Q Consensus 20 f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil 99 (590)
|+++++++.+.+.+. ++|++.|+++|.++++.++.|+|+++.+|||+|||++|++|+++.+.... ...+.++||+
T Consensus 1 ~~~~~~~~~i~~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGIY-ALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEE
Confidence 789999999999995 48999999999999999999999999999999999999999999887632 1256889999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechh
Q 007774 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD 179 (590)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah 179 (590)
+||++|+.|+.+.+..+... ..+.+..+.|+.........+..+++|+|+||+++.+++.... +.+.+++++|+||||
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~l~~lIvDE~h 153 (203)
T cd00268 76 APTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-LDLSKVKYLVLDEAD 153 (203)
T ss_pred cCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-CChhhCCEEEEeChH
Confidence 99999999999999998764 4566778888887766666666689999999999999888643 677899999999999
Q ss_pred hhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEE
Q 007774 180 RILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243 (590)
Q Consensus 180 ~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i 243 (590)
.+.+.++...+..++..++. .+|++++|||+++.+..+....+.+|.++
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPK---------------DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HhhccChHHHHHHHHHhCCc---------------ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99999999999999998874 79999999999999999998888888775
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.7e-29 Score=268.25 Aligned_cols=309 Identities=20% Similarity=0.229 Sum_probs=197.5
Q ss_pred EEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH--
Q 007774 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE-- 137 (590)
Q Consensus 60 lv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~-- 137 (590)
|+.|+||||||.+|+..+.+.+. .|.++||++|+++|+.|+++.+++.+. ..+..++++.+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---------LGKSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHH
Confidence 57899999999999877666553 356799999999999999999987642 345566776654433
Q ss_pred -HHHhcC-CCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcC---c---hHHHHHHHHHhccCCCCCCCCCC
Q 007774 138 -KARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---F---GKEIEEILDILGSRNIGSIGEGN 209 (590)
Q Consensus 138 -~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g---f---~~~l~~il~~l~~~~~~~~~~~~ 209 (590)
+..+.. ..+|+|||++.++ ..+.++++||+||+|...-.+ . ..++........
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~----------- 128 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF----------- 128 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc-----------
Confidence 333333 4799999998774 235689999999999765322 1 123333333332
Q ss_pred CccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCccc
Q 007774 210 EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQ 289 (590)
Q Consensus 210 ~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (590)
..+++++|||++.+....+. -.....+........ ...|.
T Consensus 129 -----~~~vil~SATPsles~~~~~--~g~~~~~~l~~r~~~--------------------------------~~~p~- 168 (505)
T TIGR00595 129 -----NCPVVLGSATPSLESYHNAK--QKAYRLLVLTRRVSG--------------------------------RKPPE- 168 (505)
T ss_pred -----CCCEEEEeCCCCHHHHHHHh--cCCeEEeechhhhcC--------------------------------CCCCe-
Confidence 68899999997643333222 111122222111000 00000
Q ss_pred ceeEEEEecC----CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhh------------------------
Q 007774 290 LVQRYVKVPC----GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE------------------------ 341 (590)
Q Consensus 290 l~~~~~~~~~----~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~------------------------ 341 (590)
...+.... ..-...|...+++.+ ..+.++|||+|++..+-++...=+.
T Consensus 169 --v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch 244 (505)
T TIGR00595 169 --VKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCH 244 (505)
T ss_pred --EEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcC
Confidence 00000000 011234566666555 3467899998875433221111000
Q ss_pred -ccCC---------CC-----------CCChhHHHhhhcCcceEeccCCCChHHH--HHHHHHhhccCccEEEecccccc
Q 007774 342 -FQWS---------PH-----------SQPDMELKQLFLRCKTFRLHGNMKQEDR--RTTFGAFKTEKKALLLSTDVAAR 398 (590)
Q Consensus 342 -~~~~---------~~-----------~~~~~~~~~~~~~~~v~~lhg~~~~~~R--~~~~~~F~~~~~~vLiaTdv~~r 398 (590)
+++. ++ ...++++...||+.++..+|+++++.++ .+++++|++|+.+|||+|+++++
T Consensus 245 ~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~k 324 (505)
T TIGR00595 245 YCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAK 324 (505)
T ss_pred CCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCccccc
Confidence 0000 00 0114566678999999999999988766 89999999999999999999999
Q ss_pred CCCCCCCcEEE--EecCCC----------ChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 399 GLDFPKVKCII--QYDSAG----------EATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 399 GlDip~v~~VI--~~d~p~----------s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
|+|+|+|++|+ ++|..- ....|+|++||+||.++.|.+++.....+
T Consensus 325 G~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 325 GHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred CCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 99999999986 455322 24678999999999999999987554333
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.1e-29 Score=270.59 Aligned_cols=372 Identities=19% Similarity=0.218 Sum_probs=236.9
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|.. |+++|.-.--.+..| -++.++||+|||++|++|++..... |..++||+||++||.|.++++..
T Consensus 78 ~lg~~-~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~ 145 (896)
T PRK13104 78 TLGLR-HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred HcCCC-cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 35665 888887665555555 5899999999999999999977643 45699999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCCCCC-----CceeEEEEechhhhh-hcC---
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSFLH-----TNLRWIIFDEADRIL-ELG--- 185 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~~~~-----~~l~~lVlDEah~ll-~~g--- 185 (590)
+...+ .+.+++++||.+........ .++|++||||+| +|+|.....+.+ ..+.++|+||||+++ |..
T Consensus 146 l~~~l-GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtP 222 (896)
T PRK13104 146 IYEFL-GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTP 222 (896)
T ss_pred Hhccc-CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCc
Confidence 98854 47888999997766554433 689999999999 999987645544 589999999999976 321
Q ss_pred ------------chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHH---------------------
Q 007774 186 ------------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL--------------------- 232 (590)
Q Consensus 186 ------------f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l--------------------- 232 (590)
....+..+...+...-..... .......+.+.+.+|-.--..++.+
T Consensus 223 LIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~-~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 223 LIISGAAEDSSELYIKINSLIPQLKKQEEEGDE-GDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred eeeeCCCccchHHHHHHHHHHHHHHhccccCCC-CCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 234445555555432000000 0000000122232222211111111
Q ss_pred -------HH--hhc-CCCEEEecCCC------CCCCCcccccccCc-cc--cchhh--ccCCCc----------------
Q 007774 233 -------AK--ISL-ETPVLIGLDEK------KLPEDKSHVRFGSL-ES--DVKEE--VEHPST---------------- 275 (590)
Q Consensus 233 -------~~--~~l-~~p~~i~~~~~------~~~~~~~~~~~~~~-~~--~~~~~--~~~~~~---------------- 275 (590)
.+ ..+ ++-.++..+.. .-........+... .. ..++. ......
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence 11 111 12222211111 00000000010000 00 00000 000000
Q ss_pred --ccccc-------------ccccCCcccc------eeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHH
Q 007774 276 --TMRST-------------TEDFKLPAQL------VQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 276 --~~~~~-------------~~~~~~~~~l------~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
.++.. ..-..+|.+. ....+..+...|..++..-+.... ..+.++||||+|.+.++.
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~--~~g~PVLVgt~Sie~sE~ 459 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECG--VRKQPVLVGTVSIEASEF 459 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHH
Confidence 00000 0001122211 122344455678888887776654 457899999999999999
Q ss_pred HHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCC----------
Q 007774 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK---------- 404 (590)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~---------- 404 (590)
++.+|.+. +++...|||++.+.+|..+.+.|+.| .|+|||++|+||+||.=
T Consensus 460 ls~~L~~~-----------------gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~ 520 (896)
T PRK13104 460 LSQLLKKE-----------------NIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLAN 520 (896)
T ss_pred HHHHHHHc-----------------CCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhc
Confidence 99999987 88899999999999999999999999 59999999999999941
Q ss_pred -----------------------C-----cEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 405 -----------------------V-----KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 405 -----------------------v-----~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
| =+||-...+.|..-=-|-.||+||.|.+|.+-.|++-.|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 521 LPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred cccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1 167777888888888899999999999999999987655
No 87
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=8.1e-30 Score=267.59 Aligned_cols=332 Identities=24% Similarity=0.307 Sum_probs=210.4
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILS----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~----g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|+++|++++..+.. ++..++.+|||+|||+.++-.+.... ..+||||||++|+.||++.+...
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------------~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------------RSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------------CCEEEEECcHHHHHHHHHHHHHh
Confidence 499999999999988 89999999999999998877665542 22999999999999999877766
Q ss_pred HhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHH
Q 007774 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~ 196 (590)
.... ..++.+.|+..... . ..|.|+|...+.... .-..+....+++||+|||||+....|. .+...
T Consensus 104 ~~~~--~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~ 169 (442)
T COG1061 104 LLLN--DEIGIYGGGEKELE------P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYR----RILEL 169 (442)
T ss_pred cCCc--cccceecCceeccC------C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHH----HHHHh
Confidence 4411 23444444432211 1 369999999987642 001223346899999999998765443 34444
Q ss_pred hccCCCCCCCCCCCccccCce-EEEEeecccchH-HHHHHhh-cCCCEEEecCCCCCCCCcccccc--cCccc----cch
Q 007774 197 LGSRNIGSIGEGNEVSNVKRQ-NLLLSATLNEKV-NHLAKIS-LETPVLIGLDEKKLPEDKSHVRF--GSLES----DVK 267 (590)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~q-~il~SAT~~~~~-~~l~~~~-l~~p~~i~~~~~~~~~~~~~~~~--~~~~~----~~~ 267 (590)
+. ... .+++|||++..- .....+. +..|..+......+........+ ..+.. ...
T Consensus 170 ~~----------------~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~ 233 (442)
T COG1061 170 LS----------------AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEE 233 (442)
T ss_pred hh----------------cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHH
Confidence 43 233 799999976322 1111111 11244444432211110110000 00000 000
Q ss_pred hhccCCCcccccc-ccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCC
Q 007774 268 EEVEHPSTTMRST-TEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP 346 (590)
Q Consensus 268 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~ 346 (590)
............. .........-...........+...+...+.... .+.+++||+++...++.++..|...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lif~~~~~~a~~i~~~~~~~---- 306 (442)
T COG1061 234 REYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA---RGDKTLIFASDVEHAYEIAKLFLAP---- 306 (442)
T ss_pred HHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc---CCCcEEEEeccHHHHHHHHHHhcCC----
Confidence 0000000000000 0000000000001112223344444455444432 4679999999999999999998764
Q ss_pred CCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhcc
Q 007774 347 HSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426 (590)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GR 426 (590)
+. +..+.|+.+..+|..++++|+.|...+|+++.|+.+|+|+|+++++|+..+..|+..|+||+||
T Consensus 307 -------------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR 372 (442)
T COG1061 307 -------------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGR 372 (442)
T ss_pred -------------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhh
Confidence 44 7789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CCCcc
Q 007774 427 TARL-GERGD 435 (590)
Q Consensus 427 t~R~-g~~g~ 435 (590)
.-|. ..++.
T Consensus 373 ~LR~~~~k~~ 382 (442)
T COG1061 373 GLRPAEGKED 382 (442)
T ss_pred hccCCCCCCc
Confidence 9993 33443
No 88
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.8e-28 Score=260.46 Aligned_cols=151 Identities=20% Similarity=0.312 Sum_probs=127.6
Q ss_pred ccCCCCCHHHHHHHHH----hCCCCCC---cHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCC
Q 007774 20 FSSLGLHSTLCDQLRE----RLGFEAP---TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (590)
Q Consensus 20 f~~l~l~~~l~~~l~~----~~g~~~~---t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~ 92 (590)
-+.|.+...+...+.. .+||..| ||+|.++||.++.+++++++++||+|||++|++|++..+..
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------- 134 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------- 134 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------
Confidence 3566788888888853 5689988 99999999999999999999999999999999999987754
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCCCCCC---
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSFLHT--- 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~~~~~--- 168 (590)
+..++||+||++||.|+++++..+...+ .+.+++++||.+...+.+.. +++|+|||||+| ++++... .+.++
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~ 210 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEE 210 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHH
Confidence 2248999999999999999999998854 47788999999887776554 589999999999 9999874 23333
Q ss_pred ----ceeEEEEechhhhhh
Q 007774 169 ----NLRWIIFDEADRILE 183 (590)
Q Consensus 169 ----~l~~lVlDEah~ll~ 183 (590)
.+.++|+||||+|+-
T Consensus 211 ~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 211 QVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred hhcccccEEEEechhhhhh
Confidence 568999999999874
No 89
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=2.8e-27 Score=259.11 Aligned_cols=327 Identities=20% Similarity=0.279 Sum_probs=253.7
Q ss_pred CCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhc----C--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS----G--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 23 l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~----g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
++.+......+.+.|+|+ -|+=|..||..+.+ + .|=|||+..|-|||-+++-+++.... +|.++
T Consensus 577 f~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---------~GKQV 646 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---------DGKQV 646 (1139)
T ss_pred CCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---------CCCeE
Confidence 345777888888889998 99999999999874 3 47899999999999999999888764 57999
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH---HHHhcCC-CcEEEECChHHHHHHhccCCCCCCceeE
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRW 172 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~ 172 (590)
.+||||--||+|.++.+++.+..++ +.+..+.-=.+.+.. .+.+..| .||||||.--| + +.+.++++++
T Consensus 647 AvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~--kdv~FkdLGL 719 (1139)
T COG1197 647 AVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S--KDVKFKDLGL 719 (1139)
T ss_pred EEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C--CCcEEecCCe
Confidence 9999999999999999999988765 444444332223322 2444555 99999995433 2 4567789999
Q ss_pred EEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCC
Q 007774 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (590)
Q Consensus 173 lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~ 252 (590)
||+||-|| |+-.-++-+..+.. ..-++-+|||+=+..-.++-.++++-..|...+..
T Consensus 720 lIIDEEqR-----FGVk~KEkLK~Lr~---------------~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~--- 776 (1139)
T COG1197 720 LIIDEEQR-----FGVKHKEKLKELRA---------------NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED--- 776 (1139)
T ss_pred EEEechhh-----cCccHHHHHHHHhc---------------cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC---
Confidence 99999999 88888888888865 68899999998666666665566654444333221
Q ss_pred CcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhH
Q 007774 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~ 332 (590)
.--.+.|+ .+.+-...=..+++++ ..++.+-...|..+..
T Consensus 777 -----------------------------------R~pV~T~V--~~~d~~~ireAI~REl---~RgGQvfYv~NrV~~I 816 (1139)
T COG1197 777 -----------------------------------RLPVKTFV--SEYDDLLIREAILREL---LRGGQVFYVHNRVESI 816 (1139)
T ss_pred -----------------------------------CcceEEEE--ecCChHHHHHHHHHHH---hcCCEEEEEecchhhH
Confidence 00112222 2222222223334444 3578998999999999
Q ss_pred HHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEec
Q 007774 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (590)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d 412 (590)
+.+.+.|+.+ .|..++...||.|+..+-++++..|.+|+.+|||||.+.+.|||+|+++.+|.-+
T Consensus 817 e~~~~~L~~L---------------VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 817 EKKAERLREL---------------VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred HHHHHHHHHh---------------CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 9999999886 6889999999999999999999999999999999999999999999999999766
Q ss_pred CCC-ChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 413 SAG-EATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 413 ~p~-s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
.-. -.++..|-.||+||..+.+.|++++.+..
T Consensus 882 AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred cccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 544 58888999999999999999999987643
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.7e-27 Score=256.46 Aligned_cols=333 Identities=19% Similarity=0.229 Sum_probs=235.0
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHH-HHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII-NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil-~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
.+|.. |+++|.-+.=.+..|+ +..++||+|||+++.+|++ ..+. |..+-|++||.+||.|.++++.
T Consensus 77 ~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 77 VLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT----------GKGVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred HhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHH
Confidence 46776 9999988876666664 9999999999999999996 5542 3457799999999999999999
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCCC-----CCCceeEEEEechhhhh-hcC--
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSF-----LHTNLRWIIFDEADRIL-ELG-- 185 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~~-----~~~~l~~lVlDEah~ll-~~g-- 185 (590)
.+...+ .+.+++++||.+........ .++|++|||++| +|+|...... ....+.++|+||||+++ |..
T Consensus 144 ~l~~~L-Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArt 220 (830)
T PRK12904 144 PLYEFL-GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEART 220 (830)
T ss_pred HHHhhc-CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCC
Confidence 998854 47788999987776555443 489999999999 9999875432 35688999999999865 311
Q ss_pred -------------chHHHHHHHHHhccCC-----------------------------C---------------------
Q 007774 186 -------------FGKEIEEILDILGSRN-----------------------------I--------------------- 202 (590)
Q Consensus 186 -------------f~~~l~~il~~l~~~~-----------------------------~--------------------- 202 (590)
....+..+...+.... .
T Consensus 221 pLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l 300 (830)
T PRK12904 221 PLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHEL 300 (830)
T ss_pred ceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHH
Confidence 1223333333332100 0
Q ss_pred ------------------CCCCC--CCC----------------ccccCc----------------eEEEEeecccchHH
Q 007774 203 ------------------GSIGE--GNE----------------VSNVKR----------------QNLLLSATLNEKVN 230 (590)
Q Consensus 203 ------------------~~~~~--~~~----------------~~~~~~----------------q~il~SAT~~~~~~ 230 (590)
...+. ... ...... ...+||+|......
T Consensus 301 ~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 380 (830)
T PRK12904 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE 380 (830)
T ss_pred HhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHH
Confidence 00000 000 000111 23445555443333
Q ss_pred HHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccc--eeEEEEecCCChHHHHHH
Q 007774 231 HLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQL--VQRYVKVPCGSRLAVLLS 308 (590)
Q Consensus 231 ~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~k~~~L~~ 308 (590)
++...+--+-+. +... .|... ....+..+...|..++..
T Consensus 381 E~~~iY~l~vv~--IPtn-------------------------------------kp~~r~d~~d~i~~t~~~K~~aI~~ 421 (830)
T PRK12904 381 EFREIYNLDVVV--IPTN-------------------------------------RPMIRIDHPDLIYKTEKEKFDAVVE 421 (830)
T ss_pred HHHHHhCCCEEE--cCCC-------------------------------------CCeeeeeCCCeEEECHHHHHHHHHH
Confidence 333322111111 1000 01111 112344456678888888
Q ss_pred HHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCcc
Q 007774 309 ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA 388 (590)
Q Consensus 309 ~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~ 388 (590)
.+.... ..+.++||||+|.+.++.++..|... +++...|||+ +.+|+..+..|..+...
T Consensus 422 ~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~-----------------gi~~~vLnak--q~eREa~Iia~Ag~~g~ 480 (830)
T PRK12904 422 DIKERH--KKGQPVLVGTVSIEKSELLSKLLKKA-----------------GIPHNVLNAK--NHEREAEIIAQAGRPGA 480 (830)
T ss_pred HHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCceEeccCc--hHHHHHHHHHhcCCCce
Confidence 887644 34689999999999999999999887 7888999995 88999999999999999
Q ss_pred EEEeccccccCCCCCCC--------------------------------------cEEEEecCCCChhHHHhhhccccCC
Q 007774 389 LLLSTDVAARGLDFPKV--------------------------------------KCIIQYDSAGEATEYVHRVGRTARL 430 (590)
Q Consensus 389 vLiaTdv~~rGlDip~v--------------------------------------~~VI~~d~p~s~~~yiqr~GRt~R~ 430 (590)
|+||||+|+||+||+-- =+||-...|.|..---|-.||+||.
T Consensus 481 VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQ 560 (830)
T PRK12904 481 VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQ 560 (830)
T ss_pred EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccC
Confidence 99999999999999532 1688888999999999999999999
Q ss_pred CCCccEEEEeCccc
Q 007774 431 GERGDSLLFLQPVE 444 (590)
Q Consensus 431 g~~g~~i~~l~~~e 444 (590)
|.+|.+-.|++-.|
T Consensus 561 GdpGss~f~lSleD 574 (830)
T PRK12904 561 GDPGSSRFYLSLED 574 (830)
T ss_pred CCCCceeEEEEcCc
Confidence 99999999987655
No 91
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=8.9e-28 Score=229.54 Aligned_cols=331 Identities=18% Similarity=0.249 Sum_probs=246.5
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEc
Q 007774 21 SSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (590)
Q Consensus 21 ~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~ 100 (590)
++++.+.+..+.|++.|..+..+|.|..+|...+.|+|+++..|||.||++||-+|++-. ...+|+++
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~ 141 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVIC 141 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEeec
Confidence 578899999999999999999999999999999999999999999999999999999853 46799999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHh-c--CCCcEEEECChHHHH------HHhccCCCCCC
Q 007774 101 PTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-R--KGISILVATPGRLLD------HLKHTSSFLHT 168 (590)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l-~--~~~~IlV~Tp~rl~~------~l~~~~~~~~~ 168 (590)
|...|.....-.++.+.-. ...+....+....+ +.+ . +...++..||+.+.. -|. +.+...
T Consensus 142 plislmedqil~lkqlgi~-----as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle--ka~~~~ 214 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLGID-----ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE--KALEAG 214 (695)
T ss_pred hhHHHHHHHHHHHHHhCcc-----hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH--HHhhcc
Confidence 9999999888888876432 22222222222111 111 2 236799999998743 222 334556
Q ss_pred ceeEEEEechhhhhhcC--chHHHH---HHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEE
Q 007774 169 NLRWIIFDEADRILELG--FGKEIE---EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~g--f~~~l~---~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i 243 (590)
.+.++.+||+|....|| |..+.. -+-++++ ...+++++||.++.+..-+.-.+.-...+
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~----------------~~~iigltatatn~vl~d~k~il~ie~~~ 278 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFK----------------GAPIIGLTATATNHVLDDAKDILCIEAAF 278 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchHHHHHHHHhCC----------------CCceeeeehhhhcchhhHHHHHHhHHhhh
Confidence 78899999999999887 444433 2333343 57889999999887766554333211111
Q ss_pred ecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEec-CC---ChHHHHHHHHHhhhcccCC
Q 007774 244 GLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CG---SRLAVLLSILKHLFDTEVS 319 (590)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~k~~~L~~~l~~~~~~~~~ 319 (590)
.+.... . ..++ +|.+.. +. +-...+..+++.- ..+
T Consensus 279 tf~a~f-----------------------------------n-r~nl--~yev~qkp~n~dd~~edi~k~i~~~---f~g 317 (695)
T KOG0353|consen 279 TFRAGF-----------------------------------N-RPNL--KYEVRQKPGNEDDCIEDIAKLIKGD---FAG 317 (695)
T ss_pred eeeccc-----------------------------------C-CCCc--eeEeeeCCCChHHHHHHHHHHhccc---cCC
Confidence 111110 0 0111 111111 22 2233334444333 346
Q ss_pred ceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccC
Q 007774 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARG 399 (590)
Q Consensus 320 ~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rG 399 (590)
...||||-+...++.++..|+.. |+....+|..|.+.+|.-+-+.+..|++.|+|+|-..+.|
T Consensus 318 qsgiiyc~sq~d~ekva~alkn~-----------------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 318 QSGIIYCFSQKDCEKVAKALKNH-----------------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMG 380 (695)
T ss_pred CcceEEEeccccHHHHHHHHHhc-----------------CccccccccccCccccccccccccccceEEEEEEeeeccc
Confidence 78999999999999999999988 7888889999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCChhHHHh-------------------------------------------hhccccCCCCCccE
Q 007774 400 LDFPKVKCIIQYDSAGEATEYVH-------------------------------------------RVGRTARLGERGDS 436 (590)
Q Consensus 400 lDip~v~~VI~~d~p~s~~~yiq-------------------------------------------r~GRt~R~g~~g~~ 436 (590)
||-|+|++||+..+|.|.+.|.| -.||+||.+.+..|
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99999999999999999999999 67999999999999
Q ss_pred EEEeCccc
Q 007774 437 LLFLQPVE 444 (590)
Q Consensus 437 i~~l~~~e 444 (590)
++++.-.+
T Consensus 461 ilyy~~~d 468 (695)
T KOG0353|consen 461 ILYYGFAD 468 (695)
T ss_pred EEEechHH
Confidence 99876554
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.2e-27 Score=254.86 Aligned_cols=338 Identities=18% Similarity=0.229 Sum_probs=232.7
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 32 ~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
+....+|.. |+++|.-+.=.+..|+ ++...||+|||+++.+|++-.... |..+-|++||--||.|-++
T Consensus 72 a~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd~e 139 (796)
T PRK12906 72 GAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRDAT 139 (796)
T ss_pred HHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhhHH
Confidence 333347876 9999988876666775 999999999999999999877654 7779999999999999999
Q ss_pred HHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCC-----CCCCceeEEEEechhhhh-hc
Q 007774 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSS-----FLHTNLRWIIFDEADRIL-EL 184 (590)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~-----~~~~~l~~lVlDEah~ll-~~ 184 (590)
.+..+...++ +.++++.|+.+....+.. ..++|+.+|...+ +|.|...-. .....+.+.|+||+|.++ |.
T Consensus 140 ~~~~~~~~LG-l~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDe 216 (796)
T PRK12906 140 EMGELYRWLG-LTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDE 216 (796)
T ss_pred HHHHHHHhcC-CeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeecc
Confidence 9999998654 777888776555443332 3579999999876 455554321 133567899999999854 21
Q ss_pred C---------------chHHHHHHHHHhccCC------------C-------------------------CCC-------
Q 007774 185 G---------------FGKEIEEILDILGSRN------------I-------------------------GSI------- 205 (590)
Q Consensus 185 g---------------f~~~l~~il~~l~~~~------------~-------------------------~~~------- 205 (590)
. ....+..+...+.... . ...
T Consensus 217 artPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~ 296 (796)
T PRK12906 217 ARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTA 296 (796)
T ss_pred CCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhh
Confidence 1 1122222222222110 0 000
Q ss_pred -----------------------------------C--CCCC----------------ccccCc----------------
Q 007774 206 -----------------------------------G--EGNE----------------VSNVKR---------------- 216 (590)
Q Consensus 206 -----------------------------------~--~~~~----------------~~~~~~---------------- 216 (590)
+ .... ......
T Consensus 297 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~ 376 (796)
T PRK12906 297 LAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYK 376 (796)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcc
Confidence 0 0000 000111
Q ss_pred eEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccc--eeEE
Q 007774 217 QNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQL--VQRY 294 (590)
Q Consensus 217 q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~ 294 (590)
+..+||+|......++...+--+ +. .+... .|... ....
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~-vv-~IPtn-------------------------------------kp~~r~d~~d~ 417 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME-VI-TIPTN-------------------------------------RPVIRKDSPDL 417 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC-EE-EcCCC-------------------------------------CCeeeeeCCCe
Confidence 23344444433333332221111 11 01100 01111 1122
Q ss_pred EEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHH
Q 007774 295 VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (590)
Q Consensus 295 ~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~ 374 (590)
+..+...|...+...+.... ..+.++||||+|+..++.++..|.+. +++...|||++.+.+
T Consensus 418 i~~t~~~K~~al~~~i~~~~--~~g~pvLI~t~si~~se~ls~~L~~~-----------------gi~~~~Lna~~~~~E 478 (796)
T PRK12906 418 LYPTLDSKFNAVVKEIKERH--AKGQPVLVGTVAIESSERLSHLLDEA-----------------GIPHAVLNAKNHAKE 478 (796)
T ss_pred EEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCeeEecCCcHHHH
Confidence 33445678888888886644 35789999999999999999999987 778889999999888
Q ss_pred HHHHHHHhhccCccEEEeccccccCCCC---CCCc-----EEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 375 RRTTFGAFKTEKKALLLSTDVAARGLDF---PKVK-----CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 375 R~~~~~~F~~~~~~vLiaTdv~~rGlDi---p~v~-----~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
+..+.+.++.|. |+|||++|+||+|| ++|. +||+++.|.|...|.|++|||||.|.+|.+..|++..|
T Consensus 479 a~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 479 AEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 888888888775 99999999999999 4899 99999999999999999999999999999999998775
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=3.7e-27 Score=268.29 Aligned_cols=350 Identities=20% Similarity=0.194 Sum_probs=202.2
Q ss_pred CCcHHHHHHHHHHh----c-CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVIL----S-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~-g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.++++|.+||..+. . .++++++++||||||++++..+ ..+... ....++|||+|+++|+.|+.+.+..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKA------KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhc------CccCeEEEEecHHHHHHHHHHHHHh
Confidence 48999999998775 2 3679999999999999865544 444331 2346799999999999999999987
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc----CCCCCCceeEEEEechhhhhh--------
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT----SSFLHTNLRWIIFDEADRILE-------- 183 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~----~~~~~~~l~~lVlDEah~ll~-------- 183 (590)
+..... .....+.+...... ........|+|+|+..|...+... ..+.+..+++||+|||||...
T Consensus 486 ~~~~~~-~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEGD-QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred cccccc-cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 632111 01111111110000 111234689999999987764321 124567889999999999531
Q ss_pred -cC------chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEE-ecC----CCCCC
Q 007774 184 -LG------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI-GLD----EKKLP 251 (590)
Q Consensus 184 -~g------f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i-~~~----~~~~~ 251 (590)
.+ +...+..++.++ +...++|||||...... .+..|++. ... ...+.
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF-----------------dA~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv 621 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF-----------------DAVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLI 621 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc-----------------CccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcc
Confidence 11 235666777655 34569999998632211 12234321 110 11111
Q ss_pred CCcccccccC------ccccchhhccCCCccccccccccCCcccce----eEEEEecCCChHHHHHHHHHhhhcccCCce
Q 007774 252 EDKSHVRFGS------LESDVKEEVEHPSTTMRSTTEDFKLPAQLV----QRYVKVPCGSRLAVLLSILKHLFDTEVSQK 321 (590)
Q Consensus 252 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k 321 (590)
.......+.. +.....+........ .........+..+. ..-..+-.+.....++.-+...+....++|
T Consensus 622 ~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~-~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~K 700 (1123)
T PRK11448 622 DHEPPIRIETRLSQEGIHFEKGEEVEVINTQ-TGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGK 700 (1123)
T ss_pred cCcCCEEEEEEeccccccccccchhhhcchh-hhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCc
Confidence 0000000000 000000000000000 00000000111100 000000011122222232223332233579
Q ss_pred EEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCc-cEEEeccccccCC
Q 007774 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK-ALLLSTDVAARGL 400 (590)
Q Consensus 322 ~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~-~vLiaTdv~~rGl 400 (590)
+||||.++++++.+.+.|.+....... ...+..+..+||+++ ++.+++++|+++.. .|+|++|++.+|+
T Consensus 701 tiIF~~s~~HA~~i~~~L~~~f~~~~~--------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~ 770 (1123)
T PRK11448 701 TLIFAATDAHADMVVRLLKEAFKKKYG--------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGI 770 (1123)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHhhcC--------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCC
Confidence 999999999999999888764210000 011234667899885 57789999999876 6899999999999
Q ss_pred CCCCCcEEEEecCCCChhHHHhhhccccCCCC
Q 007774 401 DFPKVKCIIQYDSAGEATEYVHRVGRTARLGE 432 (590)
Q Consensus 401 Dip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~ 432 (590)
|+|.|++||.++++.|...|+|++||+.|...
T Consensus 771 DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 771 DVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 99999999999999999999999999999754
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-25 Score=243.14 Aligned_cols=373 Identities=18% Similarity=0.199 Sum_probs=232.5
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|.. |+++|.-.-=.+..| -++.++||.|||++|.+|++..... |..+.||+|+++||.|.++++..
T Consensus 78 ~lgm~-~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~ 145 (908)
T PRK13107 78 VFEMR-HFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred HhCCC-cCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 35665 888887655444444 5899999999999999999877654 45599999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCCCCC-----CceeEEEEechhhhhhcC----
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSFLH-----TNLRWIIFDEADRILELG---- 185 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~~~~-----~~l~~lVlDEah~ll~~g---- 185 (590)
+... ..+.++++.+|.+.. ..+-.-+++|++|||++| +|+|...-.+.. ..+.++|+||||.++-..
T Consensus 146 l~~~-lGlsv~~i~~~~~~~--~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtP 222 (908)
T PRK13107 146 LFEF-LGLTVGINVAGLGQQ--EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTP 222 (908)
T ss_pred HHHh-cCCeEEEecCCCCHH--HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCc
Confidence 9985 457788888877652 222234789999999999 999987534333 678899999999976421
Q ss_pred ------------chHHHHHHHHHhccCCCCCC----CCCCCccccCceEEEEeecccchHHH------------------
Q 007774 186 ------------FGKEIEEILDILGSRNIGSI----GEGNEVSNVKRQNLLLSATLNEKVNH------------------ 231 (590)
Q Consensus 186 ------------f~~~l~~il~~l~~~~~~~~----~~~~~~~~~~~q~il~SAT~~~~~~~------------------ 231 (590)
....+..+...|........ ....-....+.+.+-+|-.-...++.
T Consensus 223 LIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~ 302 (908)
T PRK13107 223 LIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAA 302 (908)
T ss_pred eeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCch
Confidence 22334444444432100000 00000000112222222111011111
Q ss_pred ----------HHH---hhcCCCEEEecCCC------CCCCCcccccccCc-ccc--chhh--ccCCCcc-----------
Q 007774 232 ----------LAK---ISLETPVLIGLDEK------KLPEDKSHVRFGSL-ESD--VKEE--VEHPSTT----------- 276 (590)
Q Consensus 232 ----------l~~---~~l~~p~~i~~~~~------~~~~~~~~~~~~~~-~~~--~~~~--~~~~~~~----------- 276 (590)
..+ ++.++-.++..+.. .-........+... ... .++. .......
T Consensus 303 ~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr 382 (908)
T PRK13107 303 NISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFR 382 (908)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHH
Confidence 111 01112222211110 00000000010000 000 0000 0000000
Q ss_pred -------cccc-------------ccccCCcccce------eEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchh
Q 007774 277 -------MRST-------------TEDFKLPAQLV------QRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (590)
Q Consensus 277 -------~~~~-------------~~~~~~~~~l~------~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~ 330 (590)
++.. ..-..+|.+.- ...+......|..+++.-+.... ..+.++||||+|.+
T Consensus 383 ~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~--~~GrpVLV~t~sv~ 460 (908)
T PRK13107 383 QYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR--ERGQPVLVGTVSIE 460 (908)
T ss_pred hhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH--HcCCCEEEEeCcHH
Confidence 0000 00011222111 12233444667778777776655 45789999999999
Q ss_pred hHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCC------
Q 007774 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK------ 404 (590)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~------ 404 (590)
.++.++.+|... +++...||+++++.+|..+.+.|+.|. |+|||++|+||+||.=
T Consensus 461 ~se~ls~~L~~~-----------------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 461 QSELLARLMVKE-----------------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HHHHHHHHHHHC-----------------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHH
Confidence 999999999987 778889999999999999999999997 9999999999999941
Q ss_pred --------------------------C-----cEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 405 --------------------------V-----KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 405 --------------------------v-----~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
| =+||-...+.|..-=-|-.||+||.|.+|.+..|++-.|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 1 168888888898888999999999999999999987655
No 95
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=2.7e-26 Score=211.36 Aligned_cols=168 Identities=36% Similarity=0.514 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Q 007774 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122 (590)
Q Consensus 43 t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 122 (590)
||+|.++++.+.+|+++++.||||+|||++|++|+++.+... ...++++++|+++|+.|+++.+..++.. ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeecccccccccccccccccc-cc
Confidence 799999999999999999999999999999999999988762 2348999999999999999999998774 44
Q ss_pred cceEEEEcCCchH-HHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCC
Q 007774 123 IVPGYVMGGENRS-KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 201 (590)
Q Consensus 123 ~~~~~~~gg~~~~-~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~ 201 (590)
..+..++|+.... .....+..+++|+|+||+++.+.+..... .+..+++||+||+|.+.+.++...+..++..+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 5677778887755 44455566799999999999999987444 556799999999999999889999999999986532
Q ss_pred CCCCCCCCCccccCceEEEEeecccchHHHH
Q 007774 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVNHL 232 (590)
Q Consensus 202 ~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l 232 (590)
..|++++|||++..++.+
T Consensus 152 -------------~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 152 -------------NIQIILLSATLPSNVEKL 169 (169)
T ss_dssp -------------TSEEEEEESSSTHHHHHH
T ss_pred -------------CCcEEEEeeCCChhHhhC
Confidence 588999999999766653
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=5.4e-26 Score=245.06 Aligned_cols=381 Identities=19% Similarity=0.243 Sum_probs=261.6
Q ss_pred CCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCC--CCCCeeEEEEc
Q 007774 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRID--RSSGTFALVLV 100 (590)
Q Consensus 24 ~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~--~~~~~~~lil~ 100 (590)
.++.+-..++ +|...+..+|....+..+.+ .+++++||||+|||-.+++-|++.+........ .....++++++
T Consensus 295 elP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 295 ELPKWNQPAF---FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred CCcchhhhhc---ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 4566666666 37888999999999998876 489999999999999999999999876433111 12345799999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCC-CCCceeEEEEechh
Q 007774 101 PTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEAD 179 (590)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah 179 (590)
|..+|+..|...+.+.+..++ +.+.-++|......+. -.+.+|+||||+..--.-++.... -.+-++++|+||.|
T Consensus 372 PmKaLvqE~VgsfSkRla~~G-I~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLG-ITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccC-cEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh
Confidence 999999999999999888665 6666677664432211 135689999999974333332222 22357889999999
Q ss_pred hhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCC-CEEEecCCCCCCCCccccc
Q 007774 180 RILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKKLPEDKSHVR 258 (590)
Q Consensus 180 ~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~-p~~i~~~~~~~~~~~~~~~ 258 (590)
|+....+..++.|..+..... .......+.+++|||+|+...- +.....+ +-...++.+
T Consensus 448 -LLhDdRGpvLESIVaRt~r~s--------es~~e~~RlVGLSATLPNy~DV-~~Fl~v~~~glf~fd~s---------- 507 (1674)
T KOG0951|consen 448 -LLHDDRGPVLESIVARTFRRS--------ESTEEGSRLVGLSATLPNYEDV-ASFLRVDPEGLFYFDSS---------- 507 (1674)
T ss_pred -hcccccchHHHHHHHHHHHHh--------hhcccCceeeeecccCCchhhh-HHHhccCcccccccCcc----------
Confidence 555558888888877665431 1122368899999999974332 2211111 222222222
Q ss_pred ccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHH---HHHHHH-hhhcccCCceEEEEecchhhHHH
Q 007774 259 FGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAV---LLSILK-HLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~---L~~~l~-~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
.-|..+.|.|+-+..+..+.. .-+... +.+.......+|||+.+++++-.
T Consensus 508 --------------------------yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~k 561 (1674)
T KOG0951|consen 508 --------------------------YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAK 561 (1674)
T ss_pred --------------------------cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHH
Confidence 125557788887776655444 111221 12223345899999999988777
Q ss_pred HHHhhhhccCC---------CC------------CCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEec
Q 007774 335 HYSLLSEFQWS---------PH------------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST 393 (590)
Q Consensus 335 ~~~~l~~~~~~---------~~------------~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaT 393 (590)
.+..++..-.. .+ ...+.++..++ .+.+...|++|+..+|..+.+.|+.|.+.||++|
T Consensus 562 tA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL-pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvst 640 (1674)
T KOG0951|consen 562 TARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL-PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVST 640 (1674)
T ss_pred HHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh-hccceeeccCCCcchHHHHHHHHhcCceeEEEee
Confidence 77766521100 01 11122333333 4578889999999999999999999999999999
Q ss_pred cccccCCCCCCCcEEE----EecCC------CChhHHHhhhccccCCC--CCccEEEEeCccchHHHHHHHHcCCCC
Q 007774 394 DVAARGLDFPKVKCII----QYDSA------GEATEYVHRVGRTARLG--ERGDSLLFLQPVEMDYLQDLEKHGVSL 458 (590)
Q Consensus 394 dv~~rGlDip~v~~VI----~~d~p------~s~~~yiqr~GRt~R~g--~~g~~i~~l~~~e~~~~~~l~~~~~~~ 458 (590)
-.+++|+|+|.=+++| -||+- .++.+.+|+.||+||-+ ..|..++.-..+|..|.-.+.+...++
T Consensus 641 atlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpi 717 (1674)
T KOG0951|consen 641 ATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPI 717 (1674)
T ss_pred hhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCC
Confidence 9999999999988888 35543 47999999999999976 467777777777766655554444444
No 97
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=6.2e-25 Score=245.52 Aligned_cols=362 Identities=18% Similarity=0.244 Sum_probs=225.6
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|++||.+++.+++ .|.+.|+...+|.|||+..+..+.. +... +.....+|||||. .+..||.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~-L~~~-----~~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY-LHEY-----RGITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHH-HHHh-----cCCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 58999999998875 5778999999999999987654433 3221 1223458999997 6778899999988
Q ss_pred HhhcCCcceEEEEcCCchHHHH-H-Hh-cCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHH
Q 007774 117 LHRFHWIVPGYVMGGENRSKEK-A-RL-RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~-~-~l-~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~i 193 (590)
+. ...+..+.|........ . .+ ....+|+|+|++.+...... +.--.+++||+||||++-+ ....+...
T Consensus 242 ~p---~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN--~~Sklska 313 (1033)
T PLN03142 242 CP---VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKN--ENSLLSKT 313 (1033)
T ss_pred CC---CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCC--HHHHHHHH
Confidence 53 34444455443222111 1 11 23589999999998664332 2223678999999999865 34455666
Q ss_pred HHHhccCCCCCCCCCCCccccCceEEEEeeccc-chHHHHHHh-hcCCCEEEecCCC-----------------------
Q 007774 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKI-SLETPVLIGLDEK----------------------- 248 (590)
Q Consensus 194 l~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~-~~~~~l~~~-~l~~p~~i~~~~~----------------------- 248 (590)
+..+. ....+++|||+- +...++..+ .+-.|..+.....
T Consensus 314 lr~L~----------------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~ 377 (1033)
T PLN03142 314 MRLFS----------------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKV 377 (1033)
T ss_pred HHHhh----------------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHH
Confidence 66664 345689999974 444444332 2223322211000
Q ss_pred ---------------CCCCCcccccccCccccchhh----ccCCCccccccccc-------------cCCcccc------
Q 007774 249 ---------------KLPEDKSHVRFGSLESDVKEE----VEHPSTTMRSTTED-------------FKLPAQL------ 290 (590)
Q Consensus 249 ---------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------------~~~~~~l------ 290 (590)
.+++......+.......... .............. ...|.-+
T Consensus 378 L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~ 457 (1033)
T PLN03142 378 LRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPG 457 (1033)
T ss_pred hhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccccc
Confidence 000000000000000000000 00000000000000 0000000
Q ss_pred ---eeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEecc
Q 007774 291 ---VQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367 (590)
Q Consensus 291 ---~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lh 367 (590)
...-..+....|+..|..+|..+. ..+.++|||+......+.+..+|... ++..+.+|
T Consensus 458 ~~~~~~e~lie~SgKl~lLdkLL~~Lk--~~g~KVLIFSQft~~LdiLed~L~~~-----------------g~~y~rId 518 (1033)
T PLN03142 458 PPYTTGEHLVENSGKMVLLDKLLPKLK--ERDSRVLIFSQMTRLLDILEDYLMYR-----------------GYQYCRID 518 (1033)
T ss_pred CcccchhHHhhhhhHHHHHHHHHHHHH--hcCCeEEeehhHHHHHHHHHHHHHHc-----------------CCcEEEEC
Confidence 000011223567777777777654 35689999999999999998888755 77889999
Q ss_pred CCCChHHHHHHHHHhhccC---ccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEE--eCc
Q 007774 368 GNMKQEDRRTTFGAFKTEK---KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF--LQP 442 (590)
Q Consensus 368 g~~~~~~R~~~~~~F~~~~---~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~--l~~ 442 (590)
|+++..+|..+++.|++.. ..+|++|.+++.|||+..+++||+||+||||..+.|++||+.|.|+...+.++ ++.
T Consensus 519 Gsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 519 GNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred CCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 9999999999999998643 35789999999999999999999999999999999999999999998776654 343
Q ss_pred --cchHHHHHHH
Q 007774 443 --VEMDYLQDLE 452 (590)
Q Consensus 443 --~e~~~~~~l~ 452 (590)
-|...+....
T Consensus 599 gTIEEkIlera~ 610 (1033)
T PLN03142 599 YTIEEKVIERAY 610 (1033)
T ss_pred CcHHHHHHHHHH
Confidence 2444444433
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=9.3e-25 Score=239.49 Aligned_cols=368 Identities=21% Similarity=0.250 Sum_probs=245.3
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 35 ~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
..+||+ |-++|++++..+.+|.+|+|+||||||||++.-.++...+. ++.++++.+|.++|.+|.+..+.
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~---------~~qrviYTsPIKALsNQKyrdl~ 183 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR---------DGQRVIYTSPIKALSNQKYRDLL 183 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH---------cCCceEeccchhhhhhhHHHHHH
Confidence 457998 99999999999999999999999999999998887777664 35669999999999999998877
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHH
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il 194 (590)
...... ...+++++|..+.. .+..++|.|.+-|.+.+-. ....+..+.+||+||+|-|-|...+-..+.++
T Consensus 184 ~~fgdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 184 AKFGDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred HHhhhh-hhhccceecceeeC-------CCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHH
Confidence 654322 34568888876553 4578999999888877765 45667899999999999999998889999999
Q ss_pred HHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhc--CCCEEEecCCCCCCCCcccccccC------ccccc
Q 007774 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL--ETPVLIGLDEKKLPEDKSHVRFGS------LESDV 266 (590)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l--~~p~~i~~~~~~~~~~~~~~~~~~------~~~~~ 266 (590)
-.+|+ ..+++++|||+++..+.-.++.. ..|.++.+....-.+ .....+.. ++...
T Consensus 255 i~lP~---------------~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvP-L~~~~~~~~~l~~lvde~~ 318 (1041)
T COG4581 255 ILLPD---------------HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVP-LEHFVYVGKGLFDLVDEKK 318 (1041)
T ss_pred HhcCC---------------CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCC-eEEEEecCCceeeeecccc
Confidence 99986 68999999999886554444432 345444443322111 11111110 00000
Q ss_pred h---hhccCCCccccccccccCCccccee-EEE--------EecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHH
Q 007774 267 K---EEVEHPSTTMRSTTEDFKLPAQLVQ-RYV--------KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 267 ~---~~~~~~~~~~~~~~~~~~~~~~l~~-~~~--------~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
. ..................-+..-.+ ++. .+....+...++..+.. ....++|+|+-++..|+.
T Consensus 319 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~----~~~lP~I~F~FSr~~Ce~ 394 (1041)
T COG4581 319 KFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK----DNLLPAIVFSFSRRGCEE 394 (1041)
T ss_pred cchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh----hcCCceEEEEEchhhHHH
Confidence 0 0000000000000000000000000 000 00111121223333332 345799999999999999
Q ss_pred HHHhhhhccCCCCCCChh------------------HH--------HhhhcCcceEeccCCCChHHHHHHHHHhhccCcc
Q 007774 335 HYSLLSEFQWSPHSQPDM------------------EL--------KQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA 388 (590)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~------------------~~--------~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~ 388 (590)
.+..+..+........+. +. ..+..| +...|++|=+..+..+...|..|-..
T Consensus 395 ~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RG--iavHH~GlLP~~K~~vE~Lfq~GLvk 472 (1041)
T COG4581 395 AAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRG--IAVHHAGLLPAIKELVEELFQEGLVK 472 (1041)
T ss_pred HHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhh--hhhhccccchHHHHHHHHHHhcccee
Confidence 999887543322211111 00 011223 44789999999999999999999999
Q ss_pred EEEeccccccCCCCCCCcEEE----Eec----CCCChhHHHhhhccccCCCC--CccEEEEeCcc
Q 007774 389 LLLSTDVAARGLDFPKVKCII----QYD----SAGEATEYVHRVGRTARLGE--RGDSLLFLQPV 443 (590)
Q Consensus 389 vLiaTdv~~rGlDip~v~~VI----~~d----~p~s~~~yiqr~GRt~R~g~--~g~~i~~l~~~ 443 (590)
|+++|.+.+.|+|+|.-++|+ .+| .+-++.+|.|..||+||.|- .|.+++.-.+.
T Consensus 473 vvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 473 VVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred EEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 999999999999999877766 233 33479999999999999995 57777764443
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=7.7e-24 Score=200.95 Aligned_cols=311 Identities=21% Similarity=0.284 Sum_probs=215.4
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
++|+.|+.+-..++ +.++.+|.|-||+|||-...-.+-+.+ ..|.++.|.+|....|.+++..++.-
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al---------~~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL---------NQGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH---------hcCCeEEEecCcccchHHHHHHHHHh
Confidence 68999999876655 568999999999999986655554444 35788999999999999999998876
Q ss_pred HhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHH
Q 007774 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~ 196 (590)
+....+.+++|+....-+ ..++|+|...|+..- +.++++|+||+|-.-= .-...+....+.
T Consensus 168 ---F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~-~~d~~L~~Av~~ 228 (441)
T COG4098 168 ---FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK--------QAFDLLIIDEVDAFPF-SDDQSLQYAVKK 228 (441)
T ss_pred ---hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHH--------hhccEEEEeccccccc-cCCHHHHHHHHH
Confidence 445667788887654432 469999988887654 3678899999996321 012333333333
Q ss_pred hccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCcc
Q 007774 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTT 276 (590)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (590)
-.+ ...-++.+|||+++..+.-.... +-..+.+....-
T Consensus 229 ark--------------~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH-------------------------- 266 (441)
T COG4098 229 ARK--------------KEGATIYLTATPTKKLERKILKG--NLRILKLPARFH-------------------------- 266 (441)
T ss_pred hhc--------------ccCceEEEecCChHHHHHHhhhC--CeeEeecchhhc--------------------------
Confidence 322 25678999999997665543322 111222211100
Q ss_pred ccccccccCCcccceeEEEEecC-CC-----hH-HHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCC
Q 007774 277 MRSTTEDFKLPAQLVQRYVKVPC-GS-----RL-AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ 349 (590)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~-~~-----k~-~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~ 349 (590)
.....+|. ++.+.. .. |+ ..|...|+... ..+.+++||+++.+..+.++..|+..
T Consensus 267 ----~~pLpvPk-----f~w~~~~~k~l~r~kl~~kl~~~lekq~--~~~~P~liF~p~I~~~eq~a~~lk~~------- 328 (441)
T COG4098 267 ----GKPLPVPK-----FVWIGNWNKKLQRNKLPLKLKRWLEKQR--KTGRPVLIFFPEIETMEQVAAALKKK------- 328 (441)
T ss_pred ----CCCCCCCc-----eEEeccHHHHhhhccCCHHHHHHHHHHH--hcCCcEEEEecchHHHHHHHHHHHhh-------
Confidence 00011221 222221 12 22 25666666654 35689999999999999999999654
Q ss_pred ChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC--CChhHHHhhhccc
Q 007774 350 PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA--GEATEYVHRVGRT 427 (590)
Q Consensus 350 ~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p--~s~~~yiqr~GRt 427 (590)
++...+..+|+. ...|.+.+++|++|+..+||+|.+++||+.+|+|++.|.-.-- .+-+..+|..||+
T Consensus 329 --------~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRv 398 (441)
T COG4098 329 --------LPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRV 398 (441)
T ss_pred --------CCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhc
Confidence 345567778885 4579999999999999999999999999999999987753322 5788999999999
Q ss_pred cCCC--CCccEEEEeCccchHHHH
Q 007774 428 ARLG--ERGDSLLFLQPVEMDYLQ 449 (590)
Q Consensus 428 ~R~g--~~g~~i~~l~~~e~~~~~ 449 (590)
||.- ..|..+.|-......+.+
T Consensus 399 GRs~~~PtGdv~FFH~G~skaM~~ 422 (441)
T COG4098 399 GRSLERPTGDVLFFHYGKSKAMKQ 422 (441)
T ss_pred cCCCcCCCCcEEEEeccchHHHHH
Confidence 9964 468877776655555443
No 100
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=2e-24 Score=227.90 Aligned_cols=367 Identities=20% Similarity=0.203 Sum_probs=237.9
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 35 ~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
-.++|+ |-.+|++||-++..|..|+|.|+|.+|||+++-.++.-.- ..+.++++-+|-++|.+|-+..++
T Consensus 292 ~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---------~h~TR~iYTSPIKALSNQKfRDFk 361 (1248)
T KOG0947|consen 292 LIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKALSNQKFRDFK 361 (1248)
T ss_pred hhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---------hhccceEecchhhhhccchHHHHH
Confidence 357887 9999999999999999999999999999998655443221 357889999999999999999988
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHH
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il 194 (590)
.-. -.+++++|..... ....++|+|.+-|...|=+.. -.+.+++++|+||+|-+-|...+-..++++
T Consensus 362 ~tF-----~DvgLlTGDvqin-------PeAsCLIMTTEILRsMLYrga-dliRDvE~VIFDEVHYiND~eRGvVWEEVi 428 (1248)
T KOG0947|consen 362 ETF-----GDVGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYINDVERGVVWEEVI 428 (1248)
T ss_pred Hhc-----cccceeecceeeC-------CCcceEeehHHHHHHHHhccc-chhhccceEEEeeeeecccccccccceeee
Confidence 753 2455777775443 446899999999988776643 345789999999999999988888888999
Q ss_pred HHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhc-CCCEEEecCCCCCCCCcccccccC------------
Q 007774 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL-ETPVLIGLDEKKLPEDKSHVRFGS------------ 261 (590)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l-~~p~~i~~~~~~~~~~~~~~~~~~------------ 261 (590)
=.+|+ ..++|++|||.|+..+.--+.+- .+..++.+....-+....+.-+..
T Consensus 429 IMlP~---------------HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~ 493 (1248)
T KOG0947|consen 429 IMLPR---------------HVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGI 493 (1248)
T ss_pred eeccc---------------cceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccch
Confidence 99987 79999999999986554443321 222222222211111111100000
Q ss_pred -ccccchhhccCC------------Cccccccc----cccCCcccceeEEEEecCCChH--HHHHHHHHhhhcccCCceE
Q 007774 262 -LESDVKEEVEHP------------STTMRSTT----EDFKLPAQLVQRYVKVPCGSRL--AVLLSILKHLFDTEVSQKL 322 (590)
Q Consensus 262 -~~~~~~~~~~~~------------~~~~~~~~----~~~~~~~~l~~~~~~~~~~~k~--~~L~~~l~~~~~~~~~~k~ 322 (590)
+........... ........ .....+.. ...+. .+...+. .....++.... ...--++
T Consensus 494 fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g-~~r~~-~~~~nrr~~~~~l~lin~L~-k~~lLP~ 570 (1248)
T KOG0947|consen 494 FLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNG-GSRGS-GIGKNRRKQPTWLDLINHLR-KKNLLPV 570 (1248)
T ss_pred hhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCC-Ccccc-cccccccccchHHHHHHHHh-hcccCce
Confidence 000000000000 00000000 00000000 00000 1111111 12223332221 1234699
Q ss_pred EEEecchhhHHHHHHhhhhccCCCCCCChhHH----------------------HhhhcCcceEeccCCCChHHHHHHHH
Q 007774 323 VVFFSTCDAVDFHYSLLSEFQWSPHSQPDMEL----------------------KQLFLRCKTFRLHGNMKQEDRRTTFG 380 (590)
Q Consensus 323 iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~----------------------~~~~~~~~v~~lhg~~~~~~R~~~~~ 380 (590)
||||-++..|+..++.|..+....+....+.. ..-+..-.+...||++=+--++-+.-
T Consensus 571 VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~ 650 (1248)
T KOG0947|consen 571 VVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVEL 650 (1248)
T ss_pred EEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHH
Confidence 99999999999999999887665443221100 00122235778999998888888889
Q ss_pred HhhccCccEEEeccccccCCCCCCCcEEEEe----c----CCCChhHHHhhhccccCCC--CCccEEEEeCc
Q 007774 381 AFKTEKKALLLSTDVAARGLDFPKVKCIIQY----D----SAGEATEYVHRVGRTARLG--ERGDSLLFLQP 442 (590)
Q Consensus 381 ~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~----d----~p~s~~~yiqr~GRt~R~g--~~g~~i~~l~~ 442 (590)
-|..|-++|||||..++.|+|+|.-++|+.- | ---.|-+|.|++||+||.| ..|.++++...
T Consensus 651 LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 651 LFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred HHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 9999999999999999999999988777731 1 1126899999999999998 56777776543
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=1.2e-24 Score=231.37 Aligned_cols=384 Identities=20% Similarity=0.215 Sum_probs=249.6
Q ss_pred CCCHHHHHHHHHhCCCCCCcHHHHHHH--HHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcC
Q 007774 24 GLHSTLCDQLRERLGFEAPTKVQAQAI--PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (590)
Q Consensus 24 ~l~~~l~~~l~~~~g~~~~t~~Q~~~i--~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~P 101 (590)
.+.+..........|...++.||.+++ |.++.++|.+..+||+.|||++.-+-++..+.- .+..++.+.|
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~--------~rr~~llilp 277 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC--------RRRNVLLILP 277 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH--------HhhceeEecc
Confidence 355666666656679999999999998 778899999999999999999999988887664 2345899999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc-CCCCCCceeEEEEechhh
Q 007774 102 TRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT-SSFLHTNLRWIIFDEADR 180 (590)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-~~~~~~~l~~lVlDEah~ 180 (590)
....+..-...+..+....+..+.++. |+..... .++.-++.|||.++-..++... ..-.+..++++|+||.|.
T Consensus 278 ~vsiv~Ek~~~l~~~~~~~G~~ve~y~-g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 278 YVSIVQEKISALSPFSIDLGFPVEEYA-GRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM 352 (1008)
T ss_pred eeehhHHHHhhhhhhccccCCcchhhc-ccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee
Confidence 988888888888888776665555444 5443332 2344579999998865444321 111346889999999999
Q ss_pred hhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEe-cCCCCCCCCcccccc
Q 007774 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG-LDEKKLPEDKSHVRF 259 (590)
Q Consensus 181 ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~-~~~~~~~~~~~~~~~ 259 (590)
+.|.+.+..++.++..+--.+..+ ..|+|+||||+++ +..+..+ +..-++.. +.+..+.... ..
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~~~----------~~~iIGMSATi~N-~~lL~~~-L~A~~y~t~fRPv~L~E~i---k~ 417 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENLET----------SVQIIGMSATIPN-NSLLQDW-LDAFVYTTRFRPVPLKEYI---KP 417 (1008)
T ss_pred eeccccchHHHHHHHHHHHhcccc----------ceeEeeeecccCC-hHHHHHH-hhhhheecccCcccchhcc---CC
Confidence 999999999999998776433222 4789999999986 2333322 22111111 1111111000 00
Q ss_pred cCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhh
Q 007774 260 GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (590)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l 339 (590)
+..-.... .......+..-+.......-.+.++.++.+.. ..+..+||||+++.-++.++..+
T Consensus 418 G~~i~~~~---------------r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~--~e~~~~lvfc~sk~~ce~~a~~~ 480 (1008)
T KOG0950|consen 418 GSLIYESS---------------RNKVLREIANLYSSNLGDEDPDHLVGLCTETA--PEGSSVLVFCPSKKNCENVASLI 480 (1008)
T ss_pred Ccccccch---------------hhHHHHHhhhhhhhhcccCCCcceeeehhhhh--hcCCeEEEEcCcccchHHHHHHH
Confidence 00000000 00000000000000000000022233333322 23567999999999999888666
Q ss_pred hhccCCCC----CC------------------ChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccc
Q 007774 340 SEFQWSPH----SQ------------------PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAA 397 (590)
Q Consensus 340 ~~~~~~~~----~~------------------~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~ 397 (590)
........ .. .+.... .-....+...|.+++..+|..+...|++|...|++||+.++
T Consensus 481 ~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~-~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTla 559 (1008)
T KOG0950|consen 481 AKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLA-KTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLA 559 (1008)
T ss_pred HHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHh-eeccccceecccccccchHHHHHHHHHhcCeEEEEecchhh
Confidence 43321100 00 000001 11234577889999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEec----CCCChhHHHhhhccccCCC--CCccEEEEeCccchHHHHHHHH
Q 007774 398 RGLDFPKVKCIIQYD----SAGEATEYVHRVGRTARLG--ERGDSLLFLQPVEMDYLQDLEK 453 (590)
Q Consensus 398 rGlDip~v~~VI~~d----~p~s~~~yiqr~GRt~R~g--~~g~~i~~l~~~e~~~~~~l~~ 453 (590)
.|+++|...++|-.- .+.+.-+|.|++|||||+| ..|.+++++.+.|...+..+-.
T Consensus 560 aGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 560 AGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred ccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 999999999988543 3457889999999999997 5799999999988765554443
No 102
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=5.6e-24 Score=219.34 Aligned_cols=364 Identities=22% Similarity=0.234 Sum_probs=240.2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+.|+ +-|+|..+|.-+-++..|+|.|.|.+|||.++-.+|...|.. ..++|+-+|-++|.+|-+.++..
T Consensus 125 ~YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~ 194 (1041)
T KOG0948|consen 125 TYPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLE 194 (1041)
T ss_pred CCCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHH
Confidence 46776 899999999999999999999999999999998888888754 56799999999999999998875
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHH
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~ 195 (590)
-.. -+|+++|..+.. ..+..+|.|.+-|...|=. ++-.+..+.|+|+||+|-|-|...+-..++-+-
T Consensus 195 EF~-----DVGLMTGDVTIn-------P~ASCLVMTTEILRsMLYR-GSEvmrEVaWVIFDEIHYMRDkERGVVWEETII 261 (1041)
T KOG0948|consen 195 EFK-----DVGLMTGDVTIN-------PDASCLVMTTEILRSMLYR-GSEVMREVAWVIFDEIHYMRDKERGVVWEETII 261 (1041)
T ss_pred Hhc-----ccceeecceeeC-------CCCceeeeHHHHHHHHHhc-cchHhheeeeEEeeeehhccccccceeeeeeEE
Confidence 433 467788776543 3467999999998877755 344567899999999999888765555555555
Q ss_pred HhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhh--cCCCEEEecCCCCCCCCcccccccCccc------cch
Q 007774 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--LETPVLIGLDEKKLPEDKSHVRFGSLES------DVK 267 (590)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~--l~~p~~i~~~~~~~~~~~~~~~~~~~~~------~~~ 267 (590)
.+|+ ..+.+++|||+|+..+...|.+ -..|..+...+.. +....+..+..... +.+
T Consensus 262 llP~---------------~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyR-PTPLQHyifP~ggdGlylvVDek 325 (1041)
T KOG0948|consen 262 LLPD---------------NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYR-PTPLQHYIFPAGGDGLYLVVDEK 325 (1041)
T ss_pred eccc---------------cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCC-CCcceeeeecCCCCeeEEEEecc
Confidence 6665 7899999999998765544432 2356655554332 11111111110000 000
Q ss_pred ------hhccCCCccccccccc-cCC-ccccee--EEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 268 ------EEVEHPSTTMRSTTED-FKL-PAQLVQ--RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 268 ------~~~~~~~~~~~~~~~~-~~~-~~~l~~--~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
+...-........... ... ...-.. .+-..+.+..+..++..+-. ....++|||+-+++.|+.++.
T Consensus 326 ~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~----~~~~PVIvFSFSkkeCE~~Al 401 (1041)
T KOG0948|consen 326 GKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME----RNYLPVIVFSFSKKECEAYAL 401 (1041)
T ss_pred cccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh----hcCCceEEEEecHhHHHHHHH
Confidence 0000000000000000 000 000000 00011111222233333322 345799999999999999999
Q ss_pred hhhhccCCCCCCCh---------------hH-------HHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc
Q 007774 338 LLSEFQWSPHSQPD---------------ME-------LKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (590)
Q Consensus 338 ~l~~~~~~~~~~~~---------------~~-------~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv 395 (590)
.+..+-+..+...+ ++ ...++....+...||++=+--++-+.--|.+|-+++|+||..
T Consensus 402 qm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATET 481 (1041)
T KOG0948|consen 402 QMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATET 481 (1041)
T ss_pred hhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhh
Confidence 99887665432211 00 011344556888999998888888888899999999999999
Q ss_pred cccCCCCCCCcEEEE----ecCC----CChhHHHhhhccccCCCC--CccEEEEeCc
Q 007774 396 AARGLDFPKVKCIIQ----YDSA----GEATEYVHRVGRTARLGE--RGDSLLFLQP 442 (590)
Q Consensus 396 ~~rGlDip~v~~VI~----~d~p----~s~~~yiqr~GRt~R~g~--~g~~i~~l~~ 442 (590)
.+.|+|+|.-++|+- ||-- -+--+|+|+.||+||.|- .|.+++++..
T Consensus 482 FsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 482 FSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred hhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 999999998887763 3321 267789999999999995 6777777764
No 103
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=7e-22 Score=214.97 Aligned_cols=136 Identities=18% Similarity=0.304 Sum_probs=120.2
Q ss_pred cCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHH
Q 007774 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (590)
Q Consensus 298 ~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~ 377 (590)
+...++..|...++... ..+.++||||+|+..++.+++.|... ++.+..+||++++.+|.+
T Consensus 423 ~~~~qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~-----------------gi~~~~lh~~~~~~eR~~ 483 (655)
T TIGR00631 423 PTDGQVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKEL-----------------GIKVRYLHSEIDTLERVE 483 (655)
T ss_pred eccchHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhh-----------------ccceeeeeCCCCHHHHHH
Confidence 34567777887777654 34689999999999999999999887 778899999999999999
Q ss_pred HHHHhhccCccEEEeccccccCCCCCCCcEEEEec-----CCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHH
Q 007774 378 TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD-----SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 378 ~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d-----~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~ 452 (590)
+++.|+.|++.|||||+++++|+|+|++++||++| .|.+...|+||+|||||. ..|.+++|....+......+.
T Consensus 484 ~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 484 IIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred HHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 99999999999999999999999999999999998 799999999999999998 689999999887766655555
Q ss_pred H
Q 007774 453 K 453 (590)
Q Consensus 453 ~ 453 (590)
+
T Consensus 563 ~ 563 (655)
T TIGR00631 563 E 563 (655)
T ss_pred H
Confidence 4
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=3.2e-22 Score=222.50 Aligned_cols=335 Identities=21% Similarity=0.253 Sum_probs=213.8
Q ss_pred CcHHHHHHHHHHhcC---C-cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 42 PTKVQAQAIPVILSG---R-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g---~-dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
.++.|..++..++.. . .+++.||||+|||.+.++++...+... .....+++.+.|+|.+.+++++.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 489999999888753 4 789999999999999999999887652 1256789999999999999999999876
Q ss_pred hhcCCcceEEEEcCCchHHHHHH-----h---------cCCCcEEEECChHHHHHHhccCCCCCC-----ceeEEEEech
Q 007774 118 HRFHWIVPGYVMGGENRSKEKAR-----L---------RKGISILVATPGRLLDHLKHTSSFLHT-----NLRWIIFDEA 178 (590)
Q Consensus 118 ~~~~~~~~~~~~gg~~~~~~~~~-----l---------~~~~~IlV~Tp~rl~~~l~~~~~~~~~-----~l~~lVlDEa 178 (590)
....... ....|.......... . .....+.++||-....... ..+.+. ....+||||+
T Consensus 271 ~~~~~~~-~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 271 GLFSVIG-KSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSV--KGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred ccccccc-ccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhc--cccchHHHHHHHhhchhhccH
Confidence 5322111 101222111111100 0 0012344455444433111 111111 2357999999
Q ss_pred hhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccccc
Q 007774 179 DRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVR 258 (590)
Q Consensus 179 h~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~ 258 (590)
|.+.+..-...+..++..+... ...+++||||+|+.........+.+...+.......+.....
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~--------------g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~-- 411 (733)
T COG1203 348 HLYADETMLAALLALLEALAEA--------------GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEP-- 411 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhC--------------CCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccc--
Confidence 9877664445555555555542 688999999999988887766555443333321110000000
Q ss_pred ccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHh
Q 007774 259 FGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338 (590)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~ 338 (590)
.. .......+..... ..+...+.... ..+.+++|.|||.+.|..+|..
T Consensus 412 --------------------------~~---~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~kvlvI~NTV~~Aie~Y~~ 459 (733)
T COG1203 412 --------------------------GL---KRKERVDVEDGPQ-EELIELISEEV--KEGKKVLVIVNTVDRAIELYEK 459 (733)
T ss_pred --------------------------cc---ccccchhhhhhhh-Hhhhhcchhhh--ccCCcEEEEEecHHHHHHHHHH
Confidence 00 0000000000000 11122222222 3468999999999999999999
Q ss_pred hhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhh----ccCccEEEeccccccCCCCCCCcEEEEecCC
Q 007774 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK----TEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (590)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~----~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p 414 (590)
|+.. +..++.+||.+...+|.+.+++.. .+...|+|||+|.+.|+|+ +.+++|-= +
T Consensus 460 Lk~~-----------------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe--~ 519 (733)
T COG1203 460 LKEK-----------------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITE--L 519 (733)
T ss_pred HHhc-----------------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeec--C
Confidence 9886 226999999999999988887654 4688999999999999999 68887753 4
Q ss_pred CChhHHHhhhccccCCC--CCccEEEEeCccchHHHHHHH
Q 007774 415 GEATEYVHRVGRTARLG--ERGDSLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 415 ~s~~~yiqr~GRt~R~g--~~g~~i~~l~~~e~~~~~~l~ 452 (590)
..+...+||+||++|.| ..|..+++.......+.....
T Consensus 520 aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~ 559 (733)
T COG1203 520 APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSY 559 (733)
T ss_pred CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhh
Confidence 45999999999999999 567777776655544444433
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.8e-22 Score=214.01 Aligned_cols=339 Identities=21% Similarity=0.272 Sum_probs=221.5
Q ss_pred CCcHHHHHHHHHHhcC----CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSG----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g----~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.+.+-|+.++..+... ...++.+.||||||-+|+-.+.+.|. .|..+|+|+|-..|-.|+.+.++..
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA---------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---------cCCEEEEEeccccchHHHHHHHHHH
Confidence 4678999999998765 67899999999999999998888874 4788999999999999999999988
Q ss_pred HhhcCCcceEEEEcCCch---HHHHHHhc-CCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh---cC---c
Q 007774 117 LHRFHWIVPGYVMGGENR---SKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE---LG---F 186 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~---~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~---~g---f 186 (590)
.. ..+..++.|-+. ...|.+.. ....|+|||-..++ ..++++++||+||-|.-.= .+ .
T Consensus 269 Fg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--------~Pf~~LGLIIvDEEHD~sYKq~~~prYh 336 (730)
T COG1198 269 FG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEDGPRYH 336 (730)
T ss_pred hC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--------CchhhccEEEEeccccccccCCcCCCcC
Confidence 54 334444444332 23344444 45899999955443 2467999999999996321 11 2
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccc
Q 007774 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDV 266 (590)
Q Consensus 187 ~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (590)
..++........ +..+|+-|||++- +.+....-.....+......-..
T Consensus 337 ARdvA~~Ra~~~----------------~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~~a-------------- 384 (730)
T COG1198 337 ARDVAVLRAKKE----------------NAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAGRA-------------- 384 (730)
T ss_pred HHHHHHHHHHHh----------------CCCEEEecCCCCH--HHHHhhhcCceEEEEcccccccc--------------
Confidence 344444444443 6899999999763 33333222222333333221000
Q ss_pred hhhccCCCccccccccccCCcccceeEEEEecCCC----hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhc
Q 007774 267 KEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS----RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (590)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~ 342 (590)
..|. ..-..+.-.... --..|+..+++.+ ..+..+|+|.|.+..+-++..-=+..
T Consensus 385 ------------------~~p~-v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg~ 443 (730)
T COG1198 385 ------------------RLPR-VEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCGY 443 (730)
T ss_pred ------------------CCCc-ceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEEEEEccCCccceeecccCCC
Confidence 0000 000000000000 1245666666655 45789999998754433222111100
Q ss_pred cCCCC---------------------------------------------CCChhHHHhhhcCcceEeccCCCChHHH--
Q 007774 343 QWSPH---------------------------------------------SQPDMELKQLFLRCKTFRLHGNMKQEDR-- 375 (590)
Q Consensus 343 ~~~~~---------------------------------------------~~~~~~~~~~~~~~~v~~lhg~~~~~~R-- 375 (590)
...|+ ...++++...||+.+++.+.++......
T Consensus 444 v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~ 523 (730)
T COG1198 444 IAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGAL 523 (730)
T ss_pred cccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhH
Confidence 00000 0125677889999999999999877554
Q ss_pred HHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCC------------ChhHHHhhhccccCCCCCccEEEEeCcc
Q 007774 376 RTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG------------EATEYVHRVGRTARLGERGDSLLFLQPV 443 (590)
Q Consensus 376 ~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~------------s~~~yiqr~GRt~R~g~~g~~i~~l~~~ 443 (590)
...+..|.+|+.+|||.|++++.|.|||+++.|.-.|... ....+.|-.||+||.+..|.+++-....
T Consensus 524 ~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 524 EDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred HHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 5789999999999999999999999999999877655332 2445689999999999999998876555
Q ss_pred chHHHHHHHH
Q 007774 444 EMDYLQDLEK 453 (590)
Q Consensus 444 e~~~~~~l~~ 453 (590)
|-.-++.+..
T Consensus 604 ~hp~i~~~~~ 613 (730)
T COG1198 604 DHPAIQALKR 613 (730)
T ss_pred CcHHHHHHHh
Confidence 5444444433
No 106
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=3.6e-21 Score=206.00 Aligned_cols=302 Identities=22% Similarity=0.283 Sum_probs=201.5
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHH
Q 007774 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (590)
Q Consensus 29 l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 108 (590)
.-+...+..|| .|+..|+.....++.|+..-+.||||.|||..-++..+- +. ..|.++++|+||..|+.|
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~a--------~kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-LA--------KKGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-HH--------hcCCeEEEEecCHHHHHH
Confidence 33444445688 499999999999999999999999999999644443333 22 246889999999999999
Q ss_pred HHHHHHHHHhhcCCcceEEEEcCCchHH----HHHHhcC-CCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh
Q 007774 109 VYEILHKLLHRFHWIVPGYVMGGENRSK----EKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~----~~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
+++.++++........+..++.+.-... ..+++.+ +.+|+|+|.+-|......-.. -+++++++|.+|.++-
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHh
Confidence 9999999987655233333344442222 2345555 499999999988776654322 3678999999998765
Q ss_pred c-----------CchHH-H------HHHHHHhccCCCCCCCCCC-----------CccccCceEEEEeecccchHH--HH
Q 007774 184 L-----------GFGKE-I------EEILDILGSRNIGSIGEGN-----------EVSNVKRQNLLLSATLNEKVN--HL 232 (590)
Q Consensus 184 ~-----------gf~~~-l------~~il~~l~~~~~~~~~~~~-----------~~~~~~~q~il~SAT~~~~~~--~l 232 (590)
. ||.+. + ..+...+.... ...... ....+.-+.+..|||..+.-. .+
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~--~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~L 295 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEK--RAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKL 295 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHH
Confidence 3 34332 1 11111221000 000000 011235688999999864331 22
Q ss_pred HHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHh
Q 007774 233 AKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKH 312 (590)
Q Consensus 233 ~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~ 312 (590)
.+..+. +.... ......++...|+.. .-...+.++++.
T Consensus 296 fReLlg------FevG~---------------------------------~~~~LRNIvD~y~~~---~~~e~~~elvk~ 333 (1187)
T COG1110 296 FRELLG------FEVGS---------------------------------GGEGLRNIVDIYVES---ESLEKVVELVKK 333 (1187)
T ss_pred HHHHhC------CccCc---------------------------------cchhhhheeeeeccC---ccHHHHHHHHHH
Confidence 222221 11000 011223444444444 445556666666
Q ss_pred hhcccCCceEEEEecc---hhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccE
Q 007774 313 LFDTEVSQKLVVFFST---CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKAL 389 (590)
Q Consensus 313 ~~~~~~~~k~iVF~~t---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~v 389 (590)
+ +.-.|||++. .+.++.+++.|... |+++..+|+. ..+.++.|..|++++
T Consensus 334 l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~-----------------Gi~a~~~~a~-----~~~~le~F~~Geidv 386 (1187)
T COG1110 334 L-----GDGGLIFVPIDYGREKAEELAEYLRSH-----------------GINAELIHAE-----KEEALEDFEEGEVDV 386 (1187)
T ss_pred h-----CCCeEEEEEcHHhHHHHHHHHHHHHhc-----------------CceEEEeecc-----chhhhhhhccCceeE
Confidence 4 5689999999 89999999999987 8888888883 378899999999999
Q ss_pred EEec----cccccCCCCCC-CcEEEEecCC
Q 007774 390 LLST----DVAARGLDFPK-VKCIIQYDSA 414 (590)
Q Consensus 390 LiaT----dv~~rGlDip~-v~~VI~~d~p 414 (590)
||+. .++.||||+|. +.++|.|+.|
T Consensus 387 LVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 387 LVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEEecccccceeecCCchhheeEEEEecCC
Confidence 9974 68999999995 8999999999
No 107
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=5.8e-21 Score=216.89 Aligned_cols=131 Identities=21% Similarity=0.322 Sum_probs=89.9
Q ss_pred HHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhh
Q 007774 304 AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK 383 (590)
Q Consensus 304 ~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~ 383 (590)
..+...|..... ..+++++|||+|.+..+.++..|..... ..+..++. .+.. ..|.+++++|+
T Consensus 660 ~~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~~-------------~~~~~~l~--q~~~-~~r~~ll~~F~ 722 (850)
T TIGR01407 660 QEIASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELPE-------------FEGYEVLA--QGIN-GSRAKIKKRFN 722 (850)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhcc-------------ccCceEEe--cCCC-ccHHHHHHHHH
Confidence 345555555543 2357999999999999999999875211 01333333 2332 47899999999
Q ss_pred ccCccEEEeccccccCCCCCCCc--EEEEecCCCC------------------------------hhHHHhhhccccCCC
Q 007774 384 TEKKALLLSTDVAARGLDFPKVK--CIIQYDSAGE------------------------------ATEYVHRVGRTARLG 431 (590)
Q Consensus 384 ~~~~~vLiaTdv~~rGlDip~v~--~VI~~d~p~s------------------------------~~~yiqr~GRt~R~g 431 (590)
+++..||+||+.+++|+|+|+.. +||....|.. ...+.|.+||.-|..
T Consensus 723 ~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~ 802 (850)
T TIGR01407 723 NGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRE 802 (850)
T ss_pred hCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccC
Confidence 99999999999999999999755 5666666631 123368999999987
Q ss_pred CCccEEEEeCcc--chHHHHHH
Q 007774 432 ERGDSLLFLQPV--EMDYLQDL 451 (590)
Q Consensus 432 ~~g~~i~~l~~~--e~~~~~~l 451 (590)
...-+++++.+. ...|=+.+
T Consensus 803 ~D~G~v~ilD~R~~~~~Yg~~~ 824 (850)
T TIGR01407 803 NDRGSIVILDRRLVGKRYGKRF 824 (850)
T ss_pred CceEEEEEEccccccchHHHHH
Confidence 655556666553 34443333
No 108
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=1.9e-20 Score=205.42 Aligned_cols=125 Identities=19% Similarity=0.306 Sum_probs=112.4
Q ss_pred CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
...++..|...|.... ..+.++||||+|...++.+.+.|... ++.+..+||++++.+|..+
T Consensus 428 ~~~q~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~-----------------gi~~~~~h~~~~~~~R~~~ 488 (652)
T PRK05298 428 TKGQVDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKEL-----------------GIKVRYLHSDIDTLERVEI 488 (652)
T ss_pred ccccHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhc-----------------ceeEEEEECCCCHHHHHHH
Confidence 4456777777777654 34689999999999999999999876 7889999999999999999
Q ss_pred HHHhhccCccEEEeccccccCCCCCCCcEEEEecC-----CCChhHHHhhhccccCCCCCccEEEEeCcc
Q 007774 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRVGRTARLGERGDSLLFLQPV 443 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~-----p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~ 443 (590)
++.|+.|+..|||||+++++|+|+|++++||++|. |.+...|+||+|||||. ..|.+++|+...
T Consensus 489 l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 489 IRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred HHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 99999999999999999999999999999999885 78999999999999996 789999999853
No 109
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=9.5e-21 Score=207.04 Aligned_cols=315 Identities=20% Similarity=0.243 Sum_probs=217.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 121 (590)
-+....+.+..+..+.-++|.|+||||||...-..+++... ..+..+.+.=|.|--|.-+++.+.+-+....
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 35556666677778888999999999999876666665532 2345677888999888888877666654333
Q ss_pred CcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh-hhhcCch-HHHHHHHHHhcc
Q 007774 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFG-KEIEEILDILGS 199 (590)
Q Consensus 122 ~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-ll~~gf~-~~l~~il~~l~~ 199 (590)
...+|+-+-.++... ....|-+.|.|.|+..+.+... ++.+++||+||||. .++-++. ..+..++...+.
T Consensus 123 G~~VGY~iRfe~~~s------~~Trik~mTdGiLlrei~~D~~--Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 123 GETVGYSIRFESKVS------PRTRIKVMTDGILLREIQNDPL--LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred CceeeEEEEeeccCC------CCceeEEeccHHHHHHHhhCcc--cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC
Confidence 445666655544332 3456899999999999886543 57999999999995 3332221 222333333332
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccc
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRS 279 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (590)
+.++|.||||+.. +.+...+..-|+ +.+.....+
T Consensus 195 ---------------DLKiIimSATld~--~rfs~~f~~apv-i~i~GR~fP---------------------------- 228 (845)
T COG1643 195 ---------------DLKLIIMSATLDA--ERFSAYFGNAPV-IEIEGRTYP---------------------------- 228 (845)
T ss_pred ---------------CceEEEEecccCH--HHHHHHcCCCCE-EEecCCccc----------------------------
Confidence 5889999999874 555554443343 333333211
Q ss_pred cccccCCcccceeEEEEec-CCC-hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhh
Q 007774 280 TTEDFKLPAQLVQRYVKVP-CGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQL 357 (590)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~~-~~~-k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 357 (590)
+..+|.... .+. -...+...+..... ...+.++||.+..++.+...+.|.....
T Consensus 229 ----------Vei~Y~~~~~~d~~l~~ai~~~v~~~~~-~~~GdILvFLpG~~EI~~~~~~L~~~~l------------- 284 (845)
T COG1643 229 ----------VEIRYLPEAEADYILLDAIVAAVDIHLR-EGSGSILVFLPGQREIERTAEWLEKAEL------------- 284 (845)
T ss_pred ----------eEEEecCCCCcchhHHHHHHHHHHHhcc-CCCCCEEEECCcHHHHHHHHHHHHhccc-------------
Confidence 111221111 222 33445555554443 4478999999999999999999987211
Q ss_pred hcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecC------------------CCChhH
Q 007774 358 FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS------------------AGEATE 419 (590)
Q Consensus 358 ~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~------------------p~s~~~ 419 (590)
-+...++.+||.|+..++.++++---.|+.+|++||++++.+|.||+|.+||.-+. |-|-.+
T Consensus 285 ~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAs 364 (845)
T COG1643 285 GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKAS 364 (845)
T ss_pred cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhh
Confidence 13688999999999999999998888887889999999999999999999995442 236677
Q ss_pred HHhhhccccCCCCCccEEEEeCcc
Q 007774 420 YVHRVGRTARLGERGDSLLFLQPV 443 (590)
Q Consensus 420 yiqr~GRt~R~g~~g~~i~~l~~~ 443 (590)
..||.||+||.+ +|.|+=++...
T Consensus 365 A~QRaGRAGR~~-pGicyRLyse~ 387 (845)
T COG1643 365 ADQRAGRAGRTG-PGICYRLYSEE 387 (845)
T ss_pred hhhhccccccCC-CceEEEecCHH
Confidence 789999999984 69999887753
No 110
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.3e-21 Score=212.50 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=111.7
Q ss_pred CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
...|..++...+.... ..+.++||||+|++.++.+..+|... +++...||+ .+.+|+..
T Consensus 580 ~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~sE~Ls~~L~~~-----------------gI~h~vLna--kq~~REa~ 638 (1025)
T PRK12900 580 RREKYNAIVLKVEELQ--KKGQPVLVGTASVEVSETLSRMLRAK-----------------RIAHNVLNA--KQHDREAE 638 (1025)
T ss_pred HHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHHHHHHHHHHHHc-----------------CCCceeecC--CHHHhHHH
Confidence 3468888888887654 35789999999999999999999887 777888997 68899999
Q ss_pred HHHhhccCccEEEeccccccCCCCC---CCcE-----EEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 379 FGAFKTEKKALLLSTDVAARGLDFP---KVKC-----IIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~~rGlDip---~v~~-----VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
+..|..+...|+|||++|+||+||+ .|.. ||.++.|.|...|.||+|||||.|.+|.+..|++..|.
T Consensus 639 Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 639 IVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999999999999999999998 5654 49999999999999999999999999999999988763
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=7.7e-21 Score=200.66 Aligned_cols=329 Identities=21% Similarity=0.196 Sum_probs=204.3
Q ss_pred CCcHHHHHHHHHHh----cC-CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVIL----SG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~g-~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.++.+|..||..+. .| +.+|+++.||+|||.+++..+...+.. +.-.++|+|+-++.|..|.++.+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~-------~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS-------GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc-------chhheeeEEechHHHHHHHHHHHHH
Confidence 58999999997765 34 359999999999999887655444433 3457799999999999999999888
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc----CCCCCCceeEEEEechhhhhhcCchHHHH
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT----SSFLHTNLRWIIFDEADRILELGFGKEIE 191 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~----~~~~~~~l~~lVlDEah~ll~~gf~~~l~ 191 (590)
+.. ........-+.... ..+.|.|+|+.++...+... ..+....+++||+||||| |......
T Consensus 238 ~~P---~~~~~n~i~~~~~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~ 303 (875)
T COG4096 238 FLP---FGTKMNKIEDKKGD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWS 303 (875)
T ss_pred hCC---CccceeeeecccCC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhH
Confidence 743 33322222222211 13689999999998877654 234566799999999999 3455566
Q ss_pred HHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhc-CCCEEEecCCCCCC-----CCc----------c
Q 007774 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL-ETPVLIGLDEKKLP-----EDK----------S 255 (590)
Q Consensus 192 ~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l-~~p~~i~~~~~~~~-----~~~----------~ 255 (590)
.|+.++.. -+++++||+.+.+..---.++ ..|+..-.-...+. +.. .
T Consensus 304 ~I~dYFdA-----------------~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~ 366 (875)
T COG4096 304 SILDYFDA-----------------ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLD 366 (875)
T ss_pred HHHHHHHH-----------------HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeecccc
Confidence 88888852 234449998765444333333 44543322111110 000 0
Q ss_pred cccccCccccchhhccCCCccccccccccCCcccce-eEEEEecCCChHHHHHHHHHhhhcc--cC--CceEEEEecchh
Q 007774 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLV-QRYVKVPCGSRLAVLLSILKHLFDT--EV--SQKLVVFFSTCD 330 (590)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~k~~~L~~~l~~~~~~--~~--~~k~iVF~~t~~ 330 (590)
...+......++...+... .+-..+.... .....+ ..........+...+.. .. -+|+||||.+.+
T Consensus 367 G~~~~~~serek~~g~~i~-------~dd~~~~~~d~dr~~v~--~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~d 437 (875)
T COG4096 367 GWKPDAGSEREKLQGEAID-------EDDQNFEARDFDRTLVI--PFRTETVARELTEYLKRGATGDEIGKTIVFAKNHD 437 (875)
T ss_pred CcCcCccchhhhhhccccC-------cccccccccccchhccc--cchHHHHHHHHHHHhccccCCCccCceEEEeeCcH
Confidence 0001111000000000000 0000111110 011111 22333444445544433 22 469999999999
Q ss_pred hHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhc--cCccEEEeccccccCCCCCCCcEE
Q 007774 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT--EKKALLLSTDVAARGLDFPKVKCI 408 (590)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~--~~~~vLiaTdv~~rGlDip~v~~V 408 (590)
+++++.+.|.+..... .+--+..+.|+-.+. ...+..|.. .-..|.|+.|++..|+|+|.|.++
T Consensus 438 HAe~i~~~~~~~ype~------------~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 438 HAERIREALVNEYPEY------------NGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred HHHHHHHHHHHhCccc------------cCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 9999999998763221 123366677775543 334555544 346799999999999999999999
Q ss_pred EEecCCCChhHHHhhhccccCC
Q 007774 409 IQYDSAGEATEYVHRVGRTARL 430 (590)
Q Consensus 409 I~~d~p~s~~~yiqr~GRt~R~ 430 (590)
|.+..-.|...|.|++||.-|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999995
No 112
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=1e-20 Score=208.33 Aligned_cols=341 Identities=16% Similarity=0.130 Sum_probs=189.3
Q ss_pred CcHHHHHHHHHHh----c------CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 42 PTKVQAQAIPVIL----S------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 42 ~t~~Q~~~i~~il----~------g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
++++|..|+..+. . .+..+++.+||||||++.+..+...+.. ....++|||+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-------cCCCeEEEEECcHHHHHHHHH
Confidence 7889999997763 2 2579999999999999887766544422 245789999999999999999
Q ss_pred HHHHHHhhcCCcceEEEEcCCchHHHHHHhcC-CCcEEEECChHHHHHHhcc-CCCCCCce-eEEEEechhhhhhcCchH
Q 007774 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRLLDHLKHT-SSFLHTNL-RWIIFDEADRILELGFGK 188 (590)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~l~~~-~~~~~~~l-~~lVlDEah~ll~~gf~~ 188 (590)
.+..+... . ..+..+.......+.. ...|+|+|.+++...+... ..+....- -++|+|||||.... .
T Consensus 312 ~f~~~~~~----~---~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~---~ 381 (667)
T TIGR00348 312 EFQSLQKD----C---AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG---E 381 (667)
T ss_pred HHHhhCCC----C---CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch---H
Confidence 99887431 1 1112233333344433 3689999999997644321 11111111 27999999996432 2
Q ss_pred HHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHH-Hhh---cCCCEEEecCCC-CCCCC-cccccccCc
Q 007774 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA-KIS---LETPVLIGLDEK-KLPED-KSHVRFGSL 262 (590)
Q Consensus 189 ~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~-~~~---l~~p~~i~~~~~-~~~~~-~~~~~~~~~ 262 (590)
....+...+| ....++|||||-....... ... ..++.. ..... .+... .....|...
T Consensus 382 ~~~~l~~~~p----------------~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~-~Y~~~~AI~dG~~~~i~Y~~~ 444 (667)
T TIGR00348 382 LAKNLKKALK----------------NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH-RYFITDAIRDGLTVKIDYEDR 444 (667)
T ss_pred HHHHHHhhCC----------------CCcEEEEeCCCcccccccccccccCCCCCeEE-EeeHHHHhhcCCeeeEEEEec
Confidence 2233334565 5688999999853211100 000 112211 11110 00000 000001000
Q ss_pred cc--cc-----hhhccCCCccccccccccCCcccceeE----EEEecCCChHHHHHHHHHhhhc---ccCCceEEEEecc
Q 007774 263 ES--DV-----KEEVEHPSTTMRSTTEDFKLPAQLVQR----YVKVPCGSRLAVLLSILKHLFD---TEVSQKLVVFFST 328 (590)
Q Consensus 263 ~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~k~~~L~~~l~~~~~---~~~~~k~iVF~~t 328 (590)
.. .. ................+ .....+... ......+.++..+...+..++. ...+.+++|||.+
T Consensus 445 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~s 523 (667)
T TIGR00348 445 LPEDHLDRKKLDAFFDEIFELLPERIRE-ITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAIS 523 (667)
T ss_pred chhhccChHHHHHHHHHHHHhhhccccH-HHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEec
Confidence 00 00 00000000000000000 000001100 0112233444455544444432 1235899999999
Q ss_pred hhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChH---------------------HHHHHHHHhhc-cC
Q 007774 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQE---------------------DRRTTFGAFKT-EK 386 (590)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~---------------------~R~~~~~~F~~-~~ 386 (590)
+..|..+++.|........ +.....+++..+.. ....++++|++ +.
T Consensus 524 r~~a~~~~~~l~~~~~~~~------------~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~ 591 (667)
T TIGR00348 524 RYACVEEKNALDEELNEKF------------EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEEN 591 (667)
T ss_pred HHHHHHHHHHHHhhccccc------------CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCC
Confidence 9999999998876532110 11222333322111 23478889976 57
Q ss_pred ccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCC
Q 007774 387 KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARL 430 (590)
Q Consensus 387 ~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~ 430 (590)
.+|||++|++..|+|.|.+++++..-+..+. .++|.+||+.|.
T Consensus 592 ~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 592 PKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred ceEEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 8999999999999999999999887776664 589999999994
No 113
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.86 E-value=1e-19 Score=182.59 Aligned_cols=125 Identities=20% Similarity=0.325 Sum_probs=110.6
Q ss_pred cCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHH
Q 007774 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (590)
Q Consensus 298 ~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~ 377 (590)
|.....+-|+.-++... ..+.+++|-+-|.+.++.+.++|.+. |+++..+|++...-+|.+
T Consensus 427 p~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAEdLT~Yl~e~-----------------gikv~YlHSdidTlER~e 487 (663)
T COG0556 427 PTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAEDLTEYLKEL-----------------GIKVRYLHSDIDTLERVE 487 (663)
T ss_pred cCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHHHHHHHHHhc-----------------CceEEeeeccchHHHHHH
Confidence 44556666776666654 34689999999999999999999998 899999999999999999
Q ss_pred HHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC-----CChhHHHhhhccccCCCCCccEEEEeCc
Q 007774 378 TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA-----GEATEYVHRVGRTARLGERGDSLLFLQP 442 (590)
Q Consensus 378 ~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p-----~s~~~yiqr~GRt~R~g~~g~~i~~l~~ 442 (590)
++...+.|..+|||.-+.+-+|||+|.|++|..+|.. .|..+.||-+||++|. -.|.++++...
T Consensus 488 IirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 488 IIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 9999999999999999999999999999999998854 5899999999999997 56899988654
No 114
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2.3e-19 Score=185.40 Aligned_cols=319 Identities=20% Similarity=0.275 Sum_probs=207.2
Q ss_pred HHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCc
Q 007774 44 KVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWI 123 (590)
Q Consensus 44 ~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~ 123 (590)
.+-.+.+..+-+++-++|.++||||||...--.+.+.- +. ..|. +-+--|.|--|.-++..+..-....-..
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG------~~-~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAG------FA-SSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcc------cc-cCCc-EEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 34445556666778899999999999965333333321 11 1233 7777799988888876554432211122
Q ss_pred ceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh-hhhcCchHHHHHHHHHhccCCC
Q 007774 124 VPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFGKEIEEILDILGSRNI 202 (590)
Q Consensus 124 ~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-ll~~gf~~~l~~il~~l~~~~~ 202 (590)
.+|+.+-=++.. .+...|...|-|.|+..+...+. ++.+++||+||||. -+ ..+.+-.++..+-+.
T Consensus 126 ~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp~--LskYsvIIlDEAHERsl---~TDiLlGlLKki~~~-- 192 (674)
T KOG0922|consen 126 EVGYTIRFEDST------SKDTRIKYMTDGMLLREILKDPL--LSKYSVIILDEAHERSL---HTDILLGLLKKILKK-- 192 (674)
T ss_pred eeeeEEEecccC------CCceeEEEecchHHHHHHhcCCc--cccccEEEEechhhhhh---HHHHHHHHHHHHHhc--
Confidence 233322111111 12356999999999988876554 46899999999995 11 122333333333221
Q ss_pred CCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCcccccccc
Q 007774 203 GSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE 282 (590)
Q Consensus 203 ~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (590)
+...+++++|||+.. +.+...+..-|+. .+.....
T Consensus 193 ----------R~~LklIimSATlda--~kfS~yF~~a~i~-~i~GR~f-------------------------------- 227 (674)
T KOG0922|consen 193 ----------RPDLKLIIMSATLDA--EKFSEYFNNAPIL-TIPGRTF-------------------------------- 227 (674)
T ss_pred ----------CCCceEEEEeeeecH--HHHHHHhcCCceE-eecCCCC--------------------------------
Confidence 125799999999873 4444444333433 3322210
Q ss_pred ccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcc
Q 007774 283 DFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCK 362 (590)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 362 (590)
| ++..|..-+..+-+...+..+.++....+.+.++||....++.+...++|.+....... ..+. -
T Consensus 228 ----P--Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~--------~~~~-~ 292 (674)
T KOG0922|consen 228 ----P--VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPE--------DCPE-L 292 (674)
T ss_pred ----c--eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccc--------cCcc-e
Confidence 1 22333334444445555555555555577889999999999999999998765322110 0111 4
Q ss_pred eEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEE--------ecC----------CCChhHHHhhh
Q 007774 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ--------YDS----------AGEATEYVHRV 424 (590)
Q Consensus 363 v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~--------~d~----------p~s~~~yiqr~ 424 (590)
++.+||.|+..++.++++.--.|..+|+++|++++..+.||++.+||. |++ |-|-.+-.||.
T Consensus 293 ~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRa 372 (674)
T KOG0922|consen 293 ILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRA 372 (674)
T ss_pred eeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhc
Confidence 678999999999999999999999999999999999999999999994 433 44677778999
Q ss_pred ccccCCCCCccEEEEeCccc
Q 007774 425 GRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 425 GRt~R~g~~g~~i~~l~~~e 444 (590)
||+||.| +|.|+-+++..+
T Consensus 373 GRAGRt~-pGkcyRLYte~~ 391 (674)
T KOG0922|consen 373 GRAGRTG-PGKCYRLYTESA 391 (674)
T ss_pred ccCCCCC-CceEEEeeeHHH
Confidence 9999985 588888776554
No 115
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=2.3e-19 Score=169.24 Aligned_cols=187 Identities=41% Similarity=0.608 Sum_probs=151.6
Q ss_pred CCCCCCcHHHHHHHHHHhcC-CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 37 LGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
+++..|+++|.++++.++.. +.+++.++||||||.+++.++++.+... ....+++++||+.++.|+.+.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHHH
Confidence 46778999999999999998 9999999999999999999999987642 246799999999999999999988
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCC-cEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHH
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGI-SILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il 194 (590)
+..... .......++.........+..+. +++++||+.+.+.+.... .....++++|+||||++....+...+..++
T Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 77 LGPSLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HhccCC-eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 765322 23445556665455555555565 999999999999887643 455678899999999988767888888888
Q ss_pred HHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCC
Q 007774 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (590)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~ 247 (590)
..++. ..+.+++|||+++.........+.++..+....
T Consensus 155 ~~~~~---------------~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 155 KLLPK---------------NVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HhCCc---------------cceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 87743 688999999999999998888888777766654
No 116
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.84 E-value=1.3e-18 Score=194.82 Aligned_cols=132 Identities=26% Similarity=0.372 Sum_probs=93.8
Q ss_pred CCCCCcHHHHHHHHH----HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHH-HHH
Q 007774 38 GFEAPTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV-YEI 112 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~----il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~-~~~ 112 (590)
||+ +++-|.+.... +..++.++++|+||+|||++|++|++... .+.++||++||++|+.|+ .+.
T Consensus 243 ~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 243 GLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHHHHHH
Confidence 676 99999995544 34578899999999999999999988753 246799999999999999 466
Q ss_pred HHHHHhhcCCcceEEEEcCCchHHH-----------------------------------------------HHHh----
Q 007774 113 LHKLLHRFHWIVPGYVMGGENRSKE-----------------------------------------------KARL---- 141 (590)
Q Consensus 113 ~~~~~~~~~~~~~~~~~gg~~~~~~-----------------------------------------------~~~l---- 141 (590)
+..+.+.++ +...++.||.+.-.. +..+
T Consensus 312 i~~l~~~~~-~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 312 VKAIQEVFH-IDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHhcC-CcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 776665433 334445554321100 0000
Q ss_pred --------------------cCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh
Q 007774 142 --------------------RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 142 --------------------~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
....+|+|+...-|+.++..... +...++|||||||++.+
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~--~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD--FARNKVLVFDEAQKLML 450 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC--CCCCCEEEEECcchhHH
Confidence 11356999999988887754433 46789999999999765
No 117
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.84 E-value=4.6e-19 Score=192.98 Aligned_cols=351 Identities=18% Similarity=0.225 Sum_probs=228.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 121 (590)
.+..+.+.+..+.++..+++.+.||+|||....-.+++...... ..+.+++=-|.|--|.-+++.+..--....
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 46778888899999999999999999999987777887765422 456678888999999888887654332223
Q ss_pred CcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh-hhhcCch-HHHHHHHHHhcc
Q 007774 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFG-KEIEEILDILGS 199 (590)
Q Consensus 122 ~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-ll~~gf~-~~l~~il~~l~~ 199 (590)
...+++-++.++.... ...++.||.|.|+..|... -.+.++..+|+||+|. =.+..|- -.++.++..-
T Consensus 248 g~~VGYqvrl~~~~s~------~t~L~fcTtGvLLr~L~~~--~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~-- 317 (924)
T KOG0920|consen 248 GEEVGYQVRLESKRSR------ETRLLFCTTGVLLRRLQSD--PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN-- 317 (924)
T ss_pred CCeeeEEEeeecccCC------ceeEEEecHHHHHHHhccC--cccccCceeeeeeEEEccCCcccHHHHHHHHhhhC--
Confidence 3556666665543322 2569999999999999873 3456889999999994 1222222 2222232222
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccc
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRS 279 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (590)
+..++|+||||+. .+.+...+..-| .+.+.....+..... +.++-.......+..... ..
T Consensus 318 --------------p~LkvILMSAT~d--ae~fs~YF~~~p-vi~i~grtfpV~~~f--LEDil~~~~~~~~~~~~~-~~ 377 (924)
T KOG0920|consen 318 --------------PDLKVILMSATLD--AELFSDYFGGCP-VITIPGRTFPVKEYF--LEDILSKTGYVSEDDSAR-SG 377 (924)
T ss_pred --------------CCceEEEeeeecc--hHHHHHHhCCCc-eEeecCCCcchHHHH--HHHHHHHhcccccccccc-cc
Confidence 2789999999987 344444444434 344433221110000 000000000000000000 00
Q ss_pred cccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhc
Q 007774 280 TTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFL 359 (590)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (590)
.... +....+ ......+.....+..++..+......+.+|||.+..+....+++.|.....-.+ ..
T Consensus 378 ~~~~---~~~~~~-~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~----------~~ 443 (924)
T KOG0920|consen 378 PERS---QLRLAR-LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFAD----------SL 443 (924)
T ss_pred cccC---cccccc-chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccc----------cc
Confidence 0000 000000 112223356667777777777666678999999999999999988864321111 01
Q ss_pred CcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEE--------ecCCC----------ChhHHH
Q 007774 360 RCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ--------YDSAG----------EATEYV 421 (590)
Q Consensus 360 ~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~--------~d~p~----------s~~~yi 421 (590)
.+-+..+|+.|+..++..++...-.|..+|+++|++|+.+|.|++|-+||. ||+-. +-..-.
T Consensus 444 ~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~ 523 (924)
T KOG0920|consen 444 KFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAK 523 (924)
T ss_pred ceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchH
Confidence 467899999999999999999999999999999999999999999999994 55444 344447
Q ss_pred hhhccccCCCCCccEEEEeCcc
Q 007774 422 HRVGRTARLGERGDSLLFLQPV 443 (590)
Q Consensus 422 qr~GRt~R~g~~g~~i~~l~~~ 443 (590)
||.||+||. ..|.|+-+++..
T Consensus 524 QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 524 QRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred HhcccccCc-cCCeeEEeechh
Confidence 999999998 789999887754
No 118
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=5.8e-21 Score=189.17 Aligned_cols=343 Identities=17% Similarity=0.178 Sum_probs=229.8
Q ss_pred cccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC---CcEEEEccCcchHHHHHHHHHHHHHhhcCCC
Q 007774 11 VKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG---RHVLVNAATGTGKTVAYLAPIINHLQSYSPR 87 (590)
Q Consensus 11 ~~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g---~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~ 87 (590)
+.++++...|.+=.++|.+--.|+ +-..++|+|+.++..+..+ +..+|..|.|+|||++-+-++..
T Consensus 275 dyPlLeEYDFRND~~npdl~idLK---Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-------- 343 (776)
T KOG1123|consen 275 DYPLLEEYDFRNDNVNPDLDIDLK---PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-------- 343 (776)
T ss_pred CchhhhhhccccCCCCCCCCcCcC---cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee--------
Confidence 456677777877777777766662 5667999999999888743 57899999999999976654432
Q ss_pred CCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH------------
Q 007774 88 IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL------------ 155 (590)
Q Consensus 88 ~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl------------ 155 (590)
...++|+||.+-.-+.||...+..+.. .....++.++.. .+++...++.|+|+|+..+
T Consensus 344 ----ikK~clvLcts~VSVeQWkqQfk~wst-i~d~~i~rFTsd-----~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek 413 (776)
T KOG1123|consen 344 ----IKKSCLVLCTSAVSVEQWKQQFKQWST-IQDDQICRFTSD-----AKERFPSGAGVVVTTYSMVAYTGKRSHEAEK 413 (776)
T ss_pred ----ecccEEEEecCccCHHHHHHHHHhhcc-cCccceEEeecc-----ccccCCCCCcEEEEeeehhhhcccccHHHHH
Confidence 235599999999999999999998876 333334444322 3445667889999999654
Q ss_pred -HHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHH
Q 007774 156 -LDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234 (590)
Q Consensus 156 -~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~ 234 (590)
++++.. ..++++|+||+|-+-..-|...+..+-.+.+ ++++||+-.+-+.+..
T Consensus 414 ~m~~l~~------~EWGllllDEVHvvPA~MFRRVlsiv~aHcK--------------------LGLTATLvREDdKI~D 467 (776)
T KOG1123|consen 414 IMDFLRG------REWGLLLLDEVHVVPAKMFRRVLSIVQAHCK--------------------LGLTATLVREDDKITD 467 (776)
T ss_pred HHHHHhc------CeeeeEEeehhccchHHHHHHHHHHHHHHhh--------------------ccceeEEeeccccccc
Confidence 344433 5789999999998877667766666655543 7999999765555554
Q ss_pred hh-cCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhh
Q 007774 235 IS-LETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHL 313 (590)
Q Consensus 235 ~~-l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~ 313 (590)
+. |-.|..+...--.+..........-.+....-. ...-.++-....-....+.+-+..|+.....+++.+
T Consensus 468 LNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt--------~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~H 539 (776)
T KOG1123|consen 468 LNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMT--------PEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFH 539 (776)
T ss_pred cceeecchhhhccHHHHHhCCceeEEeeeeeecCCC--------HHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHH
Confidence 43 334544433222111111100000000000000 000000111111222334455567777766666654
Q ss_pred hcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhcc-CccEEEe
Q 007774 314 FDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALLLS 392 (590)
Q Consensus 314 ~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~-~~~vLia 392 (590)
- ..+.|+|||..+.-....++--|.+- .+.|..+|.+|+++++.|+-+ .++-++-
T Consensus 540 E--~RgDKiIVFsDnvfALk~YAikl~Kp----------------------fIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 540 E--RRGDKIIVFSDNVFALKEYAIKLGKP----------------------FIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred H--hcCCeEEEEeccHHHHHHHHHHcCCc----------------------eEECCCchhHHHHHHHhcccCCccceEEE
Confidence 3 36789999998887666665555432 378999999999999999865 6888999
Q ss_pred ccccccCCCCCCCcEEEEecCC-CChhHHHhhhccccCCCC
Q 007774 393 TDVAARGLDFPKVKCIIQYDSA-GEATEYVHRVGRTARLGE 432 (590)
Q Consensus 393 Tdv~~rGlDip~v~~VI~~d~p-~s~~~yiqr~GRt~R~g~ 432 (590)
+.|+...+|+|..+++||.... .|..+-.||.||.-|+.+
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 9999999999999999998765 478888999999999853
No 119
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.83 E-value=1.4e-18 Score=180.71 Aligned_cols=344 Identities=19% Similarity=0.261 Sum_probs=220.9
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|++||.+.+.++. .|-++|+...+|-|||+..+. ++..|.... +....-||++|..-|.+ |.++++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs-~l~yl~~~~-----~~~GPfLVi~P~StL~N-W~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTIS-LLGYLKGRK-----GIPGPFLVIAPKSTLDN-WMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHH-HHHHHHHhc-----CCCCCeEEEeeHhhHHH-HHHHHHHh
Confidence 59999999998876 477899999999999987544 333332211 22344799999877644 55666666
Q ss_pred HhhcCCcceEEEEcCCchHHHH--HHh-cCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHH
Q 007774 117 LHRFHWIVPGYVMGGENRSKEK--ARL-RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~--~~l-~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~i 193 (590)
.+.+.+.+++|........ ..+ ....+|+|+|++..+.-- ..+.--+++|||||||||+-++ ...+..+
T Consensus 240 ---~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~ 311 (971)
T KOG0385|consen 240 ---TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNE--KSKLSKI 311 (971)
T ss_pred ---CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcch--hhHHHHH
Confidence 4455566666654322222 122 235899999999876431 1222248899999999999874 4566677
Q ss_pred HHHhccCCCCCCCCCCCccccCceEEEEeeccc-chHHHHHH-hhcCCCEEEecCC------------------------
Q 007774 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAK-ISLETPVLIGLDE------------------------ 247 (590)
Q Consensus 194 l~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~-~~~~~l~~-~~l~~p~~i~~~~------------------------ 247 (590)
++.+. ....+|+++|+- +++.+|-. +.+--|-+.....
T Consensus 312 lr~f~----------------~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~v 375 (971)
T KOG0385|consen 312 LREFK----------------TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKV 375 (971)
T ss_pred HHHhc----------------ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhh
Confidence 77775 345588899973 22222211 1111111111100
Q ss_pred --------------CCCCCCcccccccCcc------------ccchhh---------------------ccCCCcccccc
Q 007774 248 --------------KKLPEDKSHVRFGSLE------------SDVKEE---------------------VEHPSTTMRST 280 (590)
Q Consensus 248 --------------~~~~~~~~~~~~~~~~------------~~~~~~---------------------~~~~~~~~~~~ 280 (590)
..+++......|.... .+.+.. ..++.....
T Consensus 376 L~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g-- 453 (971)
T KOG0385|consen 376 LRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG-- 453 (971)
T ss_pred hhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC--
Confidence 0011111111110000 000000 001111100
Q ss_pred ccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcC
Q 007774 281 TEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLR 360 (590)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (590)
.+.. ......-..+....|+..|-.+|..+. ..+++++||..-....+.+..++.- .+
T Consensus 454 ~ePg---~pyttdehLv~nSGKm~vLDkLL~~Lk--~~GhRVLIFSQmt~mLDILeDyc~~-----------------R~ 511 (971)
T KOG0385|consen 454 AEPG---PPYTTDEHLVTNSGKMLVLDKLLPKLK--EQGHRVLIFSQMTRMLDILEDYCML-----------------RG 511 (971)
T ss_pred CCCC---CCCCcchHHHhcCcceehHHHHHHHHH--hCCCeEEEeHHHHHHHHHHHHHHHh-----------------cC
Confidence 0000 011111123456778888888888776 4689999999988888777766643 38
Q ss_pred cceEeccCCCChHHHHHHHHHhhccC---ccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEE
Q 007774 361 CKTFRLHGNMKQEDRRTTFGAFKTEK---KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSL 437 (590)
Q Consensus 361 ~~v~~lhg~~~~~~R~~~~~~F~~~~---~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i 437 (590)
+..+.+.|.++..+|...++.|.... .-.|++|-..+-|||+...|+||.||..|+|..=.|...|+.|.|+...+.
T Consensus 512 y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~ 591 (971)
T KOG0385|consen 512 YEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVV 591 (971)
T ss_pred ceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceE
Confidence 89999999999999999999998754 345889999999999999999999999999999999999999999988777
Q ss_pred EE
Q 007774 438 LF 439 (590)
Q Consensus 438 ~~ 439 (590)
+|
T Consensus 592 V~ 593 (971)
T KOG0385|consen 592 VY 593 (971)
T ss_pred EE
Confidence 76
No 120
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.5e-17 Score=176.47 Aligned_cols=336 Identities=19% Similarity=0.189 Sum_probs=220.8
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|+. |+++|.-+.-.++.|+ +++..||+|||+++.+|++..... |..+.|++|+--||.|-++++..
T Consensus 74 ~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 74 TLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred HcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHHHHHHHH
Confidence 46876 9999999998888874 779999999999999999877644 67799999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccC-----CCCCCceeEEEEechhhhh-hcC---
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL-ELG--- 185 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~ll-~~g--- 185 (590)
+...+ .+.++++.++.+....+.. -.++|+.+|...+ +|.|...- ......+.+.|+||+|.+| |..
T Consensus 142 ly~~L-GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtP 218 (764)
T PRK12326 142 LYEAL-GLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVP 218 (764)
T ss_pred HHHhc-CCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCc
Confidence 98854 4778888777654433333 3579999999875 44444321 1234568899999999854 210
Q ss_pred -----------chHHHHHHHHHhccC---------------------------------------------------C--
Q 007774 186 -----------FGKEIEEILDILGSR---------------------------------------------------N-- 201 (590)
Q Consensus 186 -----------f~~~l~~il~~l~~~---------------------------------------------------~-- 201 (590)
....+..+...+... .
T Consensus 219 LiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~ 298 (764)
T PRK12326 219 LVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALL 298 (764)
T ss_pred eeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHH
Confidence 111122222222110 0
Q ss_pred ---C-------------CCCCCC--CC----------------cc----------------ccCceEEEEeecccchHHH
Q 007774 202 ---I-------------GSIGEG--NE----------------VS----------------NVKRQNLLLSATLNEKVNH 231 (590)
Q Consensus 202 ---~-------------~~~~~~--~~----------------~~----------------~~~~q~il~SAT~~~~~~~ 231 (590)
. ...+.. .. .. .--....+||+|......+
T Consensus 299 ~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~E 378 (764)
T PRK12326 299 QRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQ 378 (764)
T ss_pred hcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHH
Confidence 0 000000 00 00 0011356666676555555
Q ss_pred HHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHH
Q 007774 232 LAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILK 311 (590)
Q Consensus 232 l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~ 311 (590)
+...+--+ +. .+.... +.-..-....+......|..+++.-+.
T Consensus 379 f~~iY~l~-Vv-~IPtnk-----------------------------------p~~R~d~~d~iy~t~~~k~~Aii~ei~ 421 (764)
T PRK12326 379 LRQFYDLG-VS-VIPPNK-----------------------------------PNIREDEADRVYATAAEKNDAIVEHIA 421 (764)
T ss_pred HHHHhCCc-EE-ECCCCC-----------------------------------CceeecCCCceEeCHHHHHHHHHHHHH
Confidence 55433222 11 111110 000000112334445677888877776
Q ss_pred hhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhcc-CccEE
Q 007774 312 HLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALL 390 (590)
Q Consensus 312 ~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~-~~~vL 390 (590)
... ..+.++||.+.|.+.++.+..+|.+. +++...|++.-...+ ..++.+ .| ...|-
T Consensus 422 ~~~--~~GrPVLVgt~sI~~SE~ls~~L~~~-----------------gI~h~vLNAk~~~~E-A~IIa~--AG~~gaVT 479 (764)
T PRK12326 422 EVH--ETGQPVLVGTHDVAESEELAERLRAA-----------------GVPAVVLNAKNDAEE-ARIIAE--AGKYGAVT 479 (764)
T ss_pred HHH--HcCCCEEEEeCCHHHHHHHHHHHHhC-----------------CCcceeeccCchHhH-HHHHHh--cCCCCcEE
Confidence 654 45789999999999999999999987 677777887643322 222221 23 35799
Q ss_pred EeccccccCCCCC----------CC-----cEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 391 LSTDVAARGLDFP----------KV-----KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 391 iaTdv~~rGlDip----------~v-----~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
|||++|+||.||. .| =+||....|.|...--|-.||+||.|.+|.+..|++-.|.
T Consensus 480 IATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 480 VSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred EEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 9999999999994 11 2799999999999999999999999999999999876553
No 121
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=184.43 Aligned_cols=164 Identities=22% Similarity=0.247 Sum_probs=118.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
+|. |-.||.+.+..+-.+..++|.|||.+|||++-...+-..|.. .+...+|+++||.+|++|+...+....
T Consensus 509 dF~-Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-------sD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 509 DFC-PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-------SDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred ccC-CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh-------cCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 465 899999999999999999999999999998866666655544 456679999999999999998877665
Q ss_pred hhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc--CCCCCCceeEEEEechhhhhhcCchHHHHHHHH
Q 007774 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT--SSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195 (590)
Q Consensus 118 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~--~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~ 195 (590)
..........+.|.-+.. .+.-.-+++|+|+-|+.+-..|... ..-++..++++|+||+|.+-.+.=.-..+.++.
T Consensus 581 ~~~t~~rg~sl~g~ltqE--Ysinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQE--YSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred ccCccccchhhHhhhhHH--hcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 312212212222222221 1111235899999999998887663 223678999999999998876544445555555
Q ss_pred HhccCCCCCCCCCCCccccCceEEEEeecccch
Q 007774 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK 228 (590)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~ 228 (590)
.+ .+.++.+|||+.+.
T Consensus 659 li-----------------~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 LI-----------------PCPFLVLSATIGNP 674 (1330)
T ss_pred hc-----------------CCCeeEEecccCCH
Confidence 55 58899999999754
No 122
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=9.1e-19 Score=182.89 Aligned_cols=364 Identities=18% Similarity=0.234 Sum_probs=227.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.+.+||++++.++. .+...|+...+|-|||...+..+...... . + --..+|||||. .+..||..++..+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S-~-k----~~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHS-G-K----LTKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhc-c-c----ccCceEEEccH-HHHHHHHHHHHHh
Confidence 46899999998875 46678999999999997644332222111 1 1 12559999997 6788999999988
Q ss_pred HhhcCCcceEEEEcCCch--------HHHHHH-h----cCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh
Q 007774 117 LHRFHWIVPGYVMGGENR--------SKEKAR-L----RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~--------~~~~~~-l----~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
++...+..++|..+. ...+.. + ..+.+|+|+|+..+.-. ...+.--.++++|+||.|++-+
T Consensus 278 ---~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 278 ---WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred ---CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---CcccccccccEEEecCcccccC
Confidence 455566666655442 111111 1 12357999998877432 1222234789999999999877
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecc-cchHHHHHHhh-cCCCEEEecCCCCCCCCccccccc-
Q 007774 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVNHLAKIS-LETPVLIGLDEKKLPEDKSHVRFG- 260 (590)
Q Consensus 184 ~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~-~~~~~~l~~~~-l~~p~~i~~~~~~~~~~~~~~~~~- 260 (590)
.+ ..+...+..++ ..+.+.+|+|+ .+++.+|-.++ +..|-.++..+.....+..++..+
T Consensus 352 pn--s~islackki~----------------T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Gg 413 (923)
T KOG0387|consen 352 PN--SKISLACKKIR----------------TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGG 413 (923)
T ss_pred Cc--cHHHHHHHhcc----------------ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccc
Confidence 53 44444555554 56778899996 45555554332 222222221111000000000000
Q ss_pred -----------------------------Cccccchh-------h---------------------------ccCCCccc
Q 007774 261 -----------------------------SLESDVKE-------E---------------------------VEHPSTTM 277 (590)
Q Consensus 261 -----------------------------~~~~~~~~-------~---------------------------~~~~~~~~ 277 (590)
....++.. + ........
T Consensus 414 yaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l 493 (923)
T KOG0387|consen 414 YANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCL 493 (923)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccce
Confidence 00000000 0 00000000
Q ss_pred c---ccccccCCccccee---------EE-EEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccC
Q 007774 278 R---STTEDFKLPAQLVQ---------RY-VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQW 344 (590)
Q Consensus 278 ~---~~~~~~~~~~~l~~---------~~-~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~ 344 (590)
. .......-|..+.. .| -.+....|+..+..++.... ..+.++++|..++...+.+...|...
T Consensus 494 ~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~--kqg~rvllFsqs~~mLdilE~fL~~~-- 569 (923)
T KOG0387|consen 494 SGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK--KQGDRVLLFSQSRQMLDILESFLRRA-- 569 (923)
T ss_pred echHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHh--hCCCEEEEehhHHHHHHHHHHHHHhc--
Confidence 0 00000001111111 01 12223568888888888776 35679999999999999988888743
Q ss_pred CCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCc-c-EEEeccccccCCCCCCCcEEEEecCCCChhHHHh
Q 007774 345 SPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK-A-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422 (590)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~-~-vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiq 422 (590)
.++..+.+.|..+...|..++++|.++.. . .|++|.|.+-|+|+.+.+-||.|||-|+|+.=.|
T Consensus 570 --------------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~Q 635 (923)
T KOG0387|consen 570 --------------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQ 635 (923)
T ss_pred --------------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchH
Confidence 28899999999999999999999998754 3 4789999999999999999999999999999999
Q ss_pred hhccccCCCCCccEEEE--eCc---cchHHHHHHHH
Q 007774 423 RVGRTARLGERGDSLLF--LQP---VEMDYLQDLEK 453 (590)
Q Consensus 423 r~GRt~R~g~~g~~i~~--l~~---~e~~~~~~l~~ 453 (590)
..-|+-|.|++..++++ ++. .|.-|-+.+.+
T Consensus 636 AreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 636 ARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred HHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 99999999998777765 333 35555544443
No 123
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.81 E-value=9e-18 Score=180.04 Aligned_cols=373 Identities=20% Similarity=0.232 Sum_probs=219.2
Q ss_pred CCcHHHHHHHHHHhc---C-------CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 41 APTKVQAQAIPVILS---G-------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~---g-------~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.|+|||++.+..+-. | ..+++.-.+|+|||+..+..+...|.. .+...+ --.++|||+|. .|..-|.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~-~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKP-LINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCccc-cccccEEEccH-HHHHHHH
Confidence 489999999987742 2 246888889999999876666555544 221111 22679999997 7889999
Q ss_pred HHHHHHHhhcCCcceEEEEcCCchH--HHHHHhc-----CCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh
Q 007774 111 EILHKLLHRFHWIVPGYVMGGENRS--KEKARLR-----KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~gg~~~~--~~~~~l~-----~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
+++.++... ..+.+-.+.|+.+.. ...+.+. ...-|++-+++.+.++... +....+++||+||.|++-+
T Consensus 315 kEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 315 KEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccc
Confidence 999998653 345555556665531 1111111 1235788888888766543 3345889999999999654
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecc-cchHHHHHH-hhcCCCEEEecCCCCCCCCcccccc--
Q 007774 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVNHLAK-ISLETPVLIGLDEKKLPEDKSHVRF-- 259 (590)
Q Consensus 184 ~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~-~~~~~~l~~-~~l~~p~~i~~~~~~~~~~~~~~~~-- 259 (590)
. ...+...+..+. -++.|++|+|+ .+++.++.. +.+.+|.++.............+.-
T Consensus 391 ~--~s~~~kaL~~l~----------------t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~ 452 (776)
T KOG0390|consen 391 S--DSLTLKALSSLK----------------TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGR 452 (776)
T ss_pred h--hhHHHHHHHhcC----------------CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhccccccc
Confidence 2 233334444443 56778999997 345555443 4566776665533221110000000
Q ss_pred --cCccccch------------------------------------------------hhcc------------------
Q 007774 260 --GSLESDVK------------------------------------------------EEVE------------------ 271 (590)
Q Consensus 260 --~~~~~~~~------------------------------------------------~~~~------------------ 271 (590)
...+.... ....
T Consensus 453 ~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~ 532 (776)
T KOG0390|consen 453 DADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITK 532 (776)
T ss_pred CCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHH
Confidence 00000000 0000
Q ss_pred ------CCCccc----cccccccCCccc------ceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHH
Q 007774 272 ------HPSTTM----RSTTEDFKLPAQ------LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (590)
Q Consensus 272 ------~~~~~~----~~~~~~~~~~~~------l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~ 335 (590)
++.... ......+..|.. +...........++..|..++..... ....++++..|.....+.+
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~e-k~~~~~v~Isny~~tldl~ 611 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIRE-KLLVKSVLISNYTQTLDLF 611 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhh-hcceEEEEeccHHHHHHHH
Confidence 000000 000000000000 01111111112344555555432211 1122333333333333333
Q ss_pred HHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCc--c-EEEeccccccCCCCCCCcEEEEec
Q 007774 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK--A-LLLSTDVAARGLDFPKVKCIIQYD 412 (590)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~--~-vLiaTdv~~rGlDip~v~~VI~~d 412 (590)
..++.-. |..++.|||.|+..+|+.+++.|.+... . .|.+|-+.+.||++-+.+.||.||
T Consensus 612 e~~~~~~-----------------g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D 674 (776)
T KOG0390|consen 612 EQLCRWR-----------------GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFD 674 (776)
T ss_pred HHHHhhc-----------------CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeC
Confidence 3333322 8899999999999999999999998543 3 566889999999999999999999
Q ss_pred CCCChhHHHhhhccccCCCCCccEEEE--eC---ccchHHHHHHHHcCC
Q 007774 413 SAGEATEYVHRVGRTARLGERGDSLLF--LQ---PVEMDYLQDLEKHGV 456 (590)
Q Consensus 413 ~p~s~~~yiqr~GRt~R~g~~g~~i~~--l~---~~e~~~~~~l~~~~~ 456 (590)
++|||+.=.|.++|+-|.|+.-.|+++ +. ++|..|-+...+.++
T Consensus 675 ~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~l 723 (776)
T KOG0390|consen 675 PDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGL 723 (776)
T ss_pred CCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhh
Confidence 999999999999999999999888875 32 456667766666544
No 124
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1e-17 Score=171.54 Aligned_cols=326 Identities=17% Similarity=0.209 Sum_probs=212.2
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH-HHHhhc
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH-KLLHRF 120 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~-~~~~~~ 120 (590)
.+++-.+.+..+....-++|.|.||||||...--.+.+. ... ..|..+-+--|.|.-|.-++..+. ++.-.+
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~Ea------Gyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEA------GYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhc------ccc-cCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 455556667777778889999999999997532222221 111 234556677799999888876544 332222
Q ss_pred CCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh-hhhcCchHHHHHHHHHhcc
Q 007774 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFGKEIEEILDILGS 199 (590)
Q Consensus 121 ~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-ll~~gf~~~l~~il~~l~~ 199 (590)
+ ..+|+-.-=++..+ ...-|=+.|-|.|+.-+... ..+.+.+++|+||||. .+. -+.+-.++..+.+
T Consensus 339 G-~eVGYsIRFEdcTS------ekTvlKYMTDGmLlREfL~e--pdLasYSViiiDEAHERTL~---TDILfgLvKDIar 406 (902)
T KOG0923|consen 339 G-HEVGYSIRFEDCTS------EKTVLKYMTDGMLLREFLSE--PDLASYSVIIVDEAHERTLH---TDILFGLVKDIAR 406 (902)
T ss_pred c-cccceEEEeccccC------cceeeeeecchhHHHHHhcc--ccccceeEEEeehhhhhhhh---hhHHHHHHHHHHh
Confidence 1 11222111111111 12336689999998766543 4567899999999995 221 1222222222222
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccc
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRS 279 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (590)
. ++....++.|||+.. +.+...+..-|++..-....
T Consensus 407 ~------------RpdLKllIsSAT~DA--ekFS~fFDdapIF~iPGRRy------------------------------ 442 (902)
T KOG0923|consen 407 F------------RPDLKLLISSATMDA--EKFSAFFDDAPIFRIPGRRY------------------------------ 442 (902)
T ss_pred h------------CCcceEEeeccccCH--HHHHHhccCCcEEeccCccc------------------------------
Confidence 1 137889999999863 55555444455554322211
Q ss_pred cccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhh----ccCCCCCCChhHHH
Q 007774 280 TTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE----FQWSPHSQPDMELK 355 (590)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~----~~~~~~~~~~~~~~ 355 (590)
| +.-+|...|..+-+++.+.-+.++....+.+.+|||....+..+...+.|.. ++..
T Consensus 443 -------P--Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGsk---------- 503 (902)
T KOG0923|consen 443 -------P--VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSK---------- 503 (902)
T ss_pred -------c--eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccc----------
Confidence 1 2234555666677777777777776667789999999998877666555543 3222
Q ss_pred hhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEec------------------CCCCh
Q 007774 356 QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD------------------SAGEA 417 (590)
Q Consensus 356 ~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d------------------~p~s~ 417 (590)
...+-++.+|++++...+.++++---.|-..|++||++|+..|.|++|.+||.-+ .|-|-
T Consensus 504 --i~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 504 --IRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred --cceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeech
Confidence 3356788999999999999999988889999999999999999999999999543 23466
Q ss_pred hHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 418 TEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 418 ~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
..-.||.||+||.| +|.|+-+++.. .|...|+..
T Consensus 582 AsA~QRaGRAGRtg-PGKCfRLYt~~--aY~~eLE~~ 615 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG-PGKCFRLYTAW--AYEHELEEM 615 (902)
T ss_pred hhhhhhccccCCCC-CCceEEeechh--hhhhhhccC
Confidence 67789999999996 58888887742 334444433
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=4e-17 Score=177.42 Aligned_cols=372 Identities=19% Similarity=0.230 Sum_probs=215.3
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|.. |+++|.-.-=.+..| -++...||+|||+++.+|++-... .|..+-|++||--||.|-++++..
T Consensus 78 ~lGm~-~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al---------~G~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 78 VMGMR-HFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNAL---------SGKGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred HhCCC-cchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 36754 888887665444444 688999999999999999986654 367799999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCCC-----CCCceeEEEEechhhhh-hcC---
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSF-----LHTNLRWIIFDEADRIL-ELG--- 185 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~~-----~~~~l~~lVlDEah~ll-~~g--- 185 (590)
+...+ .+.++++.++......+... .++|++||..-+ +|.|...-.+ ....+.+.|+||+|++| |..
T Consensus 146 l~~~l-Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtP 222 (913)
T PRK13103 146 LYEFL-GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTP 222 (913)
T ss_pred Hhccc-CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCc
Confidence 98854 47778887766554433333 389999999886 5555543222 23688999999999865 321
Q ss_pred ------------chHHHHHHHHHhccCCCCC---C-CCCCCccccCceEEEEeecccchHHH------------------
Q 007774 186 ------------FGKEIEEILDILGSRNIGS---I-GEGNEVSNVKRQNLLLSATLNEKVNH------------------ 231 (590)
Q Consensus 186 ------------f~~~l~~il~~l~~~~~~~---~-~~~~~~~~~~~q~il~SAT~~~~~~~------------------ 231 (590)
....+..+...|...-... . .........+.+.+.++-.-...++.
T Consensus 223 LIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~ 302 (913)
T PRK13103 223 LIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAH 302 (913)
T ss_pred eeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChh
Confidence 2234555555553210000 0 00000000011122222110011111
Q ss_pred -----------HH-H-hhcCCCEEEecCCC------CCCCCcccccccCc-ccc--chhh--ccCCC-------------
Q 007774 232 -----------LA-K-ISLETPVLIGLDEK------KLPEDKSHVRFGSL-ESD--VKEE--VEHPS------------- 274 (590)
Q Consensus 232 -----------l~-~-~~l~~p~~i~~~~~------~~~~~~~~~~~~~~-~~~--~~~~--~~~~~------------- 274 (590)
+. . ++.++-.++..+.. .-........+... ... .++. .....
T Consensus 303 ~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr 382 (913)
T PRK13103 303 NLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFR 382 (913)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHH
Confidence 00 0 11122222211110 00000000010000 000 0000 00000
Q ss_pred -----cccccc-------------ccccCCcccc------eeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchh
Q 007774 275 -----TTMRST-------------TEDFKLPAQL------VQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (590)
Q Consensus 275 -----~~~~~~-------------~~~~~~~~~l------~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~ 330 (590)
..++.. ..-..+|.+. ....+..+...|..+++.-+.... ..+.++||-+.|.+
T Consensus 383 ~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~--~~GrPVLVGT~SVe 460 (913)
T PRK13103 383 LYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECM--ALGRPVLVGTATIE 460 (913)
T ss_pred hcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCCHH
Confidence 000000 0001122211 112344455678888887777665 45789999999999
Q ss_pred hHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhcc-CccEEEeccccccCCCCC------
Q 007774 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALLLSTDVAARGLDFP------ 403 (590)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~-~~~vLiaTdv~~rGlDip------ 403 (590)
..+.+..+|... +++.-.|+......+- .++. ..| ...|-|||++|+||-||.
T Consensus 461 ~SE~ls~~L~~~-----------------gi~h~VLNAk~~~~EA-~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~ 520 (913)
T PRK13103 461 TSEHMSNLLKKE-----------------GIEHKVLNAKYHEKEA-EIIA--QAGRPGALTIATNMAGRGTDILLGGNWE 520 (913)
T ss_pred HHHHHHHHHHHc-----------------CCcHHHhccccchhHH-HHHH--cCCCCCcEEEeccCCCCCCCEecCCchH
Confidence 999999999887 5555556665332222 2222 334 457999999999999993
Q ss_pred --------------------------CC-----cEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 404 --------------------------KV-----KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 404 --------------------------~v-----~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
.| =+||-...|.|..-=-|-.||+||.|.+|.+-.|++-.|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 521 VEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 11 168888899999999999999999999999999988644
No 126
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.9e-18 Score=172.38 Aligned_cols=362 Identities=12% Similarity=0.068 Sum_probs=246.4
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHH
Q 007774 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (590)
Q Consensus 29 l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 108 (590)
+...+.+.|--+....+|.++|..+-+|+++++.-.|.+||.++|.+.....+.. ......+++.|+.+++..
T Consensus 274 ~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~~ 346 (1034)
T KOG4150|consen 274 SIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLRN 346 (1034)
T ss_pred HHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhhc
Confidence 4455556666778899999999999999999999999999999999988877654 445668999999999876
Q ss_pred HHHHHHHHHhhcCCc--ceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhc-cCCC--CCCceeEEEEechhhhhh
Q 007774 109 VYEILHKLLHRFHWI--VPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH-TSSF--LHTNLRWIIFDEADRILE 183 (590)
Q Consensus 109 ~~~~~~~~~~~~~~~--~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~--~~~~l~~lVlDEah~ll~ 183 (590)
....+.-.+...+.. .+.-.+.|.+...+.+..+.+.+++.+.|......... ...+ .+-.+.+++.||+|..+.
T Consensus 347 ~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~ 426 (1034)
T KOG4150|consen 347 GSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF 426 (1034)
T ss_pred cCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec
Confidence 654432221111111 12234556666667778889999999999887543322 1121 223456789999996443
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcC-CCEEEecCCCCCCCCcccccccCc
Q 007774 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-TPVLIGLDEKKLPEDKSHVRFGSL 262 (590)
Q Consensus 184 ~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~-~p~~i~~~~~~~~~~~~~~~~~~~ 262 (590)
. |.......+++|...+.... .....|++-.|||..+.++....+..- .-..+..+...
T Consensus 427 ~-~~~~~~~~~R~L~~L~~~F~------~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP------------- 486 (1034)
T KOG4150|consen 427 P-TKALAQDQLRALSDLIKGFE------ASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP------------- 486 (1034)
T ss_pred c-hhhHHHHHHHHHHHHHHHHH------hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC-------------
Confidence 3 44433333333322111100 112678999999999888877766433 34444444432
Q ss_pred cccchhhccCCCccccccccccCCcccceeEEEEec---------CCChHHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 263 ESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP---------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
..-.+..+.-| .+.+......++.+.. .++-++|-||.++..|+
T Consensus 487 -------------------------s~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i--~~~~R~IAFC~~R~~CE 539 (1034)
T KOG4150|consen 487 -------------------------SSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV--QHGLRCIAFCPSRKLCE 539 (1034)
T ss_pred -------------------------CccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH--HcCCcEEEeccHHHHHH
Confidence 11111111111 1234444444444443 34679999999999999
Q ss_pred HHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecC
Q 007774 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (590)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~ 413 (590)
.+....++....... -.--.+..+.|+-...+|.++..+.-.|+..-+|+|+.++-|||+..++.|++.+.
T Consensus 540 L~~~~~R~I~~ET~~---------~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF 610 (1034)
T KOG4150|consen 540 LVLCLTREILAETAP---------HLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF 610 (1034)
T ss_pred HHHHHHHHHHHHhhH---------HHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC
Confidence 887776654221100 00113556789999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhccccCCCCCccEEEE--eCccchHHHHHHHH
Q 007774 414 AGEATEYVHRVGRTARLGERGDSLLF--LQPVEMDYLQDLEK 453 (590)
Q Consensus 414 p~s~~~yiqr~GRt~R~g~~g~~i~~--l~~~e~~~~~~l~~ 453 (590)
|.|...+.|..||+||.++...++.+ ..|-+..|+..-..
T Consensus 611 P~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~ 652 (1034)
T KOG4150|consen 611 PGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDK 652 (1034)
T ss_pred chhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHH
Confidence 99999999999999999988776654 56778888765443
No 127
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=9e-18 Score=147.34 Aligned_cols=121 Identities=32% Similarity=0.583 Sum_probs=110.4
Q ss_pred CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 300 ~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
..|...+..++..... .+.++||||++.+.++.++..|... +..+..+||+++..+|..++
T Consensus 11 ~~k~~~i~~~i~~~~~--~~~~~lvf~~~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~ 71 (131)
T cd00079 11 DEKLEALLELLKEHLK--KGGKVLIFCPSKKMLDELAELLRKP-----------------GIKVAALHGDGSQEEREEVL 71 (131)
T ss_pred HHHHHHHHHHHHhccc--CCCcEEEEeCcHHHHHHHHHHHHhc-----------------CCcEEEEECCCCHHHHHHHH
Confidence 3788888888887542 4689999999999999999999874 67789999999999999999
Q ss_pred HHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEE
Q 007774 380 GAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (590)
Q Consensus 380 ~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~ 439 (590)
+.|.++...||+||+++++|+|+|++++||.+++|++...|+|++||++|.|+.|.+++|
T Consensus 72 ~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 72 KDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred HHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999999999999999999998887764
No 128
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.75 E-value=4.4e-17 Score=176.73 Aligned_cols=362 Identities=14% Similarity=0.207 Sum_probs=225.3
Q ss_pred CcHHHHHHHHHHh--c--CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 42 PTKVQAQAIPVIL--S--GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 42 ~t~~Q~~~i~~il--~--g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
++.||++.+.++. . +=+.|++..+|-|||+..+..+......+..+.......-.|||||+ .|+--|..++.+++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 5889999998764 2 33789999999999998766554443333333333445558999997 68999999999985
Q ss_pred hhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHh
Q 007774 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (590)
Q Consensus 118 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l 197 (590)
. ...+...+|+.......+.--++.+|+|++++.+.+-+.. +.-..+.|.|+||-|-|-+ -...+......+
T Consensus 1055 p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN--~ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1055 P---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKN--SKTKLTKAVKQL 1126 (1549)
T ss_pred c---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecc--hHHHHHHHHHHH
Confidence 4 4555556666554444444445679999999998643321 1114788999999997655 345555666666
Q ss_pred ccCCCCCCCCCCCccccCceEEEEeecc-cchHHHHHHhh-cCCCEEEecCCCCCCCCc------------------ccc
Q 007774 198 GSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVNHLAKIS-LETPVLIGLDEKKLPEDK------------------SHV 257 (590)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~q~il~SAT~-~~~~~~l~~~~-l~~p~~i~~~~~~~~~~~------------------~~~ 257 (590)
. ..+.+.+|+|+ .+++.++-.++ +-=|-+++.....-.++. +..
T Consensus 1127 ~----------------a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~l 1190 (1549)
T KOG0392|consen 1127 R----------------ANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVL 1190 (1549)
T ss_pred h----------------hcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHH
Confidence 5 34457789996 45566554432 111333322211000000 000
Q ss_pred --------------------------------cccCc---cccchhhc-cC-------CCccccccccc--c--------
Q 007774 258 --------------------------------RFGSL---ESDVKEEV-EH-------PSTTMRSTTED--F-------- 284 (590)
Q Consensus 258 --------------------------------~~~~~---~~~~~~~~-~~-------~~~~~~~~~~~--~-------- 284 (590)
.|-.. .......+ .. .........+. .
T Consensus 1191 AleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqY 1270 (1549)
T KOG0392|consen 1191 ALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQY 1270 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHH
Confidence 00000 00000000 00 00000000000 0
Q ss_pred -----------CCc---------ccceeE---EEEecCCChHHHHHHHHHhhhcc------------cCCceEEEEecch
Q 007774 285 -----------KLP---------AQLVQR---YVKVPCGSRLAVLLSILKHLFDT------------EVSQKLVVFFSTC 329 (590)
Q Consensus 285 -----------~~~---------~~l~~~---~~~~~~~~k~~~L~~~l~~~~~~------------~~~~k~iVF~~t~ 329 (590)
..| ..+.+. ...+....|+.+|..+|..+-.. -..++++|||.-.
T Consensus 1271 lrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK 1350 (1549)
T KOG0392|consen 1271 LRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLK 1350 (1549)
T ss_pred HHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHH
Confidence 000 000000 00012245777888877764321 1346899999999
Q ss_pred hhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhcc-CccEEE-eccccccCCCCCCCcE
Q 007774 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALLL-STDVAARGLDFPKVKC 407 (590)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~-~~~vLi-aTdv~~rGlDip~v~~ 407 (590)
...+.+..-|-+. ..|.+....|.|..++.+|.++.++|+++ .++||+ +|-|.+-|+|+.+.|.
T Consensus 1351 ~mlDlVekDL~k~--------------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1351 SMLDLVEKDLFKK--------------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred HHHHHHHHHHhhh--------------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCce
Confidence 9888777655433 24577778999999999999999999998 788865 8899999999999999
Q ss_pred EEEecCCCChhHHHhhhccccCCCCCccEEE--EeCc
Q 007774 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLL--FLQP 442 (590)
Q Consensus 408 VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~--~l~~ 442 (590)
||.++-.|||..=.|...|+.|.|++..+-+ +++.
T Consensus 1417 VVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1417 VVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred EEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 9999999999999999999999998765544 4554
No 129
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=1.4e-16 Score=163.58 Aligned_cols=322 Identities=16% Similarity=0.193 Sum_probs=196.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
....++.+.+..+..++-++|.+.||||||....-.+++.= + .+..-+-+--|.|.-|.-++..+..-+...
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edG--Y------~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDG--Y------ADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcc--c------ccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 35677788888888888999999999999975443333321 0 122234444599999988887665543211
Q ss_pred CCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh-hhhcCchHHHHHHHHHhcc
Q 007774 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFGKEIEEILDILGS 199 (590)
Q Consensus 121 ~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-ll~~gf~~~l~~il~~l~~ 199 (590)
-...+++-+-=++... ...-|=..|-|-|+.-..... .+....++|+||||. -++ .+.+..++..+-.
T Consensus 428 lG~~VGYsIRFEdvT~------~~T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHERslN---tDilfGllk~~la 496 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTS------EDTKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHERSLN---TDILFGLLKKVLA 496 (1042)
T ss_pred cccccceEEEeeecCC------CceeEEEeccchHHHHHhhhh--hhhheeEEEechhhhcccc---hHHHHHHHHHHHH
Confidence 1122232221111111 123477899999876433322 456889999999995 111 1223333333322
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccc
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRS 279 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (590)
. +.+..+|..|||+. .+.+...+..-|.+..-...
T Consensus 497 r------------RrdlKliVtSATm~--a~kf~nfFgn~p~f~IpGRT------------------------------- 531 (1042)
T KOG0924|consen 497 R------------RRDLKLIVTSATMD--AQKFSNFFGNCPQFTIPGRT------------------------------- 531 (1042)
T ss_pred h------------hccceEEEeecccc--HHHHHHHhCCCceeeecCCc-------------------------------
Confidence 1 12678999999986 46666655444544322111
Q ss_pred cccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhc
Q 007774 280 TTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFL 359 (590)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (590)
.|- .-.|...+.++-..+.+.-...+......+.++||....+..+-....++....... .....
T Consensus 532 ------yPV--~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~-------~~~~~ 596 (1042)
T KOG0924|consen 532 ------YPV--EIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLD-------SAPTT 596 (1042)
T ss_pred ------cce--EEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhh-------cCCCC
Confidence 111 112222222222222222222222334568999999887655544444432211000 00113
Q ss_pred CcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEec------------------CCCChhHHH
Q 007774 360 RCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD------------------SAGEATEYV 421 (590)
Q Consensus 360 ~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d------------------~p~s~~~yi 421 (590)
++.|+.+.+.|++.-+.++++.--.|...++|||++|+..|.+|++.+||.-+ .|-|-..--
T Consensus 597 ~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~ 676 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANAD 676 (1042)
T ss_pred ceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccch
Confidence 77899999999999999999998899999999999999999999999999655 334556667
Q ss_pred hhhccccCCCCCccEEEEeCc
Q 007774 422 HRVGRTARLGERGDSLLFLQP 442 (590)
Q Consensus 422 qr~GRt~R~g~~g~~i~~l~~ 442 (590)
||.||+||.| +|.|+-+++.
T Consensus 677 QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 677 QRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred hhccccCCCC-Ccceeeehhh
Confidence 9999999985 5888887765
No 130
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.73 E-value=6.9e-18 Score=133.59 Aligned_cols=72 Identities=32% Similarity=0.671 Sum_probs=70.8
Q ss_pred CcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCC
Q 007774 360 RCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG 431 (590)
Q Consensus 360 ~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g 431 (590)
++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|.+++||++++|+++..|+|++||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999986
No 131
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=7.6e-16 Score=160.80 Aligned_cols=341 Identities=19% Similarity=0.240 Sum_probs=199.0
Q ss_pred CCCCcHHHHHHH------------HHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 39 FEAPTKVQAQAI------------PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 39 ~~~~t~~Q~~~i------------~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
..+++.+|..=+ ..|..+--+||++.||||||...--.+++.=.... . ..++.-+=|--|.|.-|
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~--~-~~~~gmIGITqPRRVAa 318 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASE--Q-SSSPGMIGITQPRRVAA 318 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCc--c-CCCCCeeeecCchHHHH
Confidence 346778886543 33334555899999999999754433333211111 0 12233455666999888
Q ss_pred HHHHHHHHHHHhhcCCcceEEEE--cCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhc
Q 007774 107 LQVYEILHKLLHRFHWIVPGYVM--GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (590)
Q Consensus 107 ~Q~~~~~~~~~~~~~~~~~~~~~--gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~ 184 (590)
.-+++.+..-+..++ ..+++.+ .|. ......|.++|-|.|+.-+.+ .|.+.....||+||||.=. +
T Consensus 319 iamAkRVa~EL~~~~-~eVsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERS-v 386 (1172)
T KOG0926|consen 319 IAMAKRVAFELGVLG-SEVSYQIRFDGT--------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERS-V 386 (1172)
T ss_pred HHHHHHHHHHhccCc-cceeEEEEeccc--------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhcc-c
Confidence 888765443332232 2233322 221 123457999999999988875 4667899999999999511 0
Q ss_pred CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHH---HhhcCCCEEEecCCCCCCCCcccccccC
Q 007774 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA---KISLETPVLIGLDEKKLPEDKSHVRFGS 261 (590)
Q Consensus 185 gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~---~~~l~~p~~i~~~~~~~~~~~~~~~~~~ 261 (590)
+.+.+-.++.++-..+..- ......-.....|+||||+. +..+. .++-..|-.+.++....+
T Consensus 387 -nTDILiGmLSRiV~LR~k~--~ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfP---------- 451 (1172)
T KOG0926|consen 387 -NTDILIGMLSRIVPLRQKY--YKEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFP---------- 451 (1172)
T ss_pred -hHHHHHHHHHHHHHHHHHH--hhhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCc----------
Confidence 2222222222221110000 00001112578899999984 22222 222223335555444311
Q ss_pred ccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHH---hhhcccCCceEEEEecchhhHHHHHHh
Q 007774 262 LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILK---HLFDTEVSQKLVVFFSTCDAVDFHYSL 338 (590)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~---~~~~~~~~~k~iVF~~t~~~~~~~~~~ 338 (590)
-.+ | ..-....+.+.+..+ .+....+.+.++||+....+++++.+.
T Consensus 452 --------------------------VsI-H----F~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~k 500 (1172)
T KOG0926|consen 452 --------------------------VSI-H----FNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEK 500 (1172)
T ss_pred --------------------------eEE-E----eccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHH
Confidence 111 1 111111222333222 233345678999999999999999998
Q ss_pred hhhccC---CC-C--------------------CCC------------hh------------------------------
Q 007774 339 LSEFQW---SP-H--------------------SQP------------DM------------------------------ 352 (590)
Q Consensus 339 l~~~~~---~~-~--------------------~~~------------~~------------------------------ 352 (590)
|++... .. . ... ++
T Consensus 501 LRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~ng 580 (1172)
T KOG0926|consen 501 LRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNG 580 (1172)
T ss_pred HHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccC
Confidence 876421 00 0 000 00
Q ss_pred ----HHHh------------hhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEE------
Q 007774 353 ----ELKQ------------LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ------ 410 (590)
Q Consensus 353 ----~~~~------------~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~------ 410 (590)
+..+ .....-|+.|++-++..+++++++.--+|..-++|+|+||+..|.||+|.+||.
T Consensus 581 e~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~ 660 (1172)
T KOG0926|consen 581 EPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKE 660 (1172)
T ss_pred CcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhh
Confidence 0000 011234788999999999999999999999999999999999999999999995
Q ss_pred --ecCCCChhHH----------HhhhccccCCCCCccEEEEeC
Q 007774 411 --YDSAGEATEY----------VHRVGRTARLGERGDSLLFLQ 441 (590)
Q Consensus 411 --~d~p~s~~~y----------iqr~GRt~R~g~~g~~i~~l~ 441 (590)
||--...+.| -||+||+||.| +|.|+-++.
T Consensus 661 R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYS 702 (1172)
T KOG0926|consen 661 RLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYS 702 (1172)
T ss_pred hccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhh
Confidence 4444444444 49999999997 588887754
No 132
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=99.71 E-value=1.5e-17 Score=124.18 Aligned_cols=63 Identities=51% Similarity=0.843 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhcCCCCCCccc
Q 007774 494 LQNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSFALKEQPSLV 557 (590)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f~l~~~p~~~ 557 (590)
+|.+++.++.+|+++.++|++||+||+|+|.+| .+++.||++++||++|+|+||||.++|++.
T Consensus 2 iq~~l~~~~~~d~~l~~lA~~Af~SyvraY~~~-~~~k~iF~~~~L~l~~~A~sfGL~~~P~v~ 64 (65)
T PF13959_consen 2 IQQKLEKLVAKDRELKELAQKAFVSYVRAYASH-KELKDIFNVKKLDLGHLAKSFGLLEAPKVR 64 (65)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-hhhhhhCCcccCCHHHHHHHcCCCCCCCCC
Confidence 788999999999999999999999999999999 569999999999999999999999999873
No 133
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.71 E-value=1.8e-14 Score=154.82 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=51.3
Q ss_pred HHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 51 PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 51 ~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
..+..++.+++.|+||+|||++|++|++..+.. ..+.++||++||++|+.|+.+.+..+.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-------~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-------RPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-------ccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 344567889999999999999999999987753 235789999999999999999888776
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=3.8e-15 Score=160.46 Aligned_cols=333 Identities=18% Similarity=0.195 Sum_probs=211.8
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|.. |+++|.-+-=.+..| -+....||=||||++.+|++-..+ .|..+-|++..--||.-=++++..
T Consensus 74 ~lG~r-~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL---------~GkgVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 74 VLGKR-PYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL---------TGKGVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred HhCCC-cCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh---------cCCceEEEecchhhhhhhHHHHHH
Confidence 46775 999998887666666 479999999999999999865443 367789999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCC-----CCCCceeEEEEechhhhh-hcC---
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSS-----FLHTNLRWIIFDEADRIL-ELG--- 185 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~-----~~~~~l~~lVlDEah~ll-~~g--- 185 (590)
+...+ .+.++++..+......+. .-.++|+.||...| +|.|...-. .....+.+.|+||+|.++ |..
T Consensus 142 vy~fL-GLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTP 218 (925)
T PRK12903 142 VFNFL-GLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTP 218 (925)
T ss_pred HHHHh-CCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCc
Confidence 88844 467777776544443322 24589999999876 566654322 134678899999999754 211
Q ss_pred ------------chHHHHHHHHHhccCC----------------------------CC----------------------
Q 007774 186 ------------FGKEIEEILDILGSRN----------------------------IG---------------------- 203 (590)
Q Consensus 186 ------------f~~~l~~il~~l~~~~----------------------------~~---------------------- 203 (590)
+...+..+...+.... ..
T Consensus 219 LIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~ 298 (925)
T PRK12903 219 LIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMK 298 (925)
T ss_pred ccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHh
Confidence 1122222222221100 00
Q ss_pred -----------------CCCC--CC----------------CccccCce----------------EEEEeecccchHHHH
Q 007774 204 -----------------SIGE--GN----------------EVSNVKRQ----------------NLLLSATLNEKVNHL 232 (590)
Q Consensus 204 -----------------~~~~--~~----------------~~~~~~~q----------------~il~SAT~~~~~~~l 232 (590)
..+. .. .......| ..+||+|....-.++
T Consensus 299 rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef 378 (925)
T PRK12903 299 EDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEF 378 (925)
T ss_pred cCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHH
Confidence 0000 00 00111222 233333433222222
Q ss_pred HHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccc--eeEEEEecCCChHHHHHHHH
Q 007774 233 AKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQL--VQRYVKVPCGSRLAVLLSIL 310 (590)
Q Consensus 233 ~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~k~~~L~~~l 310 (590)
...+--+-+ .+.. ..|... ....+......|..+++.-+
T Consensus 379 ~~iY~l~Vv--~IPT-------------------------------------nkP~~R~D~~d~iy~t~~~K~~Aii~ei 419 (925)
T PRK12903 379 IDIYNMRVN--VVPT-------------------------------------NKPVIRKDEPDSIFGTKHAKWKAVVKEV 419 (925)
T ss_pred HHHhCCCEE--ECCC-------------------------------------CCCeeeeeCCCcEEEcHHHHHHHHHHHH
Confidence 222111100 0000 011111 11134445667888888777
Q ss_pred HhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhcc-CccE
Q 007774 311 KHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKAL 389 (590)
Q Consensus 311 ~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~-~~~v 389 (590)
.... ..+.++||.|.|.+.++.++.+|... +++.-.|++.- .+++..+=. ..| ...|
T Consensus 420 ~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~-----------------gi~h~vLNAk~--~e~EA~IIa-~AG~~GaV 477 (925)
T PRK12903 420 KRVH--KKGQPILIGTAQVEDSETLHELLLEA-----------------NIPHTVLNAKQ--NAREAEIIA-KAGQKGAI 477 (925)
T ss_pred HHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCceeecccc--hhhHHHHHH-hCCCCCeE
Confidence 7655 35789999999999999999999887 66666677753 233332222 345 4679
Q ss_pred EEeccccccCCCCCC---Cc-----EEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 390 LLSTDVAARGLDFPK---VK-----CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 390 LiaTdv~~rGlDip~---v~-----~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
.|||++|+||.||.- |. +||....|.|..---|..||+||.|.+|.+-.|++-.|
T Consensus 478 TIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 478 TIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred EEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 999999999999942 21 89999999999888999999999999999999987654
No 135
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=2.6e-15 Score=149.07 Aligned_cols=343 Identities=17% Similarity=0.189 Sum_probs=212.6
Q ss_pred cccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCC
Q 007774 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (590)
Q Consensus 13 ~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~ 92 (590)
....-++|.+++.+++..+.|+++-... ....+.+-+..+..++-+++.+.||||||...--.+++.... .
T Consensus 20 ~~k~~Npf~~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~--------~ 90 (699)
T KOG0925|consen 20 NAKAINPFNGKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS--------H 90 (699)
T ss_pred hhhhcCCCCCCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh--------h
Confidence 3445789999999999999997664333 455666667888889999999999999998765556655443 1
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeE
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~ 172 (590)
...+..--|.|.-|.+++..+.+-..-.-...+|+...=++.......+ -.+|-|.|+.-.-++. .+..+++
T Consensus 91 ~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~L------ky~tDgmLlrEams~p--~l~~y~v 162 (699)
T KOG0925|consen 91 LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLL------KYCTDGMLLREAMSDP--LLGRYGV 162 (699)
T ss_pred ccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHH------HHhcchHHHHHHhhCc--ccccccE
Confidence 2446777799999988887655433211111122211111111111111 2566677655443333 3468999
Q ss_pred EEEechhh-hhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCC
Q 007774 173 IIFDEADR-ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (590)
Q Consensus 173 lVlDEah~-ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~ 251 (590)
||+||||. .+. .+.+..++..+-.. +++..++.||||+.. ..+-. ++.++-.+.+....
T Consensus 163 iiLDeahERtlA---TDiLmGllk~v~~~------------rpdLk~vvmSatl~a--~Kfq~-yf~n~Pll~vpg~~-- 222 (699)
T KOG0925|consen 163 IILDEAHERTLA---TDILMGLLKEVVRN------------RPDLKLVVMSATLDA--EKFQR-YFGNAPLLAVPGTH-- 222 (699)
T ss_pred EEechhhhhhHH---HHHHHHHHHHHHhh------------CCCceEEEeecccch--HHHHH-HhCCCCeeecCCCC--
Confidence 99999995 111 12222233222211 127899999999753 33333 34444444443211
Q ss_pred CCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhh
Q 007774 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~ 331 (590)
| .+.+|..-+..+.+.+.+..+-++......+.++||....++
T Consensus 223 -----------------------------------P--vEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeee 265 (699)
T KOG0925|consen 223 -----------------------------------P--VEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEE 265 (699)
T ss_pred -----------------------------------c--eEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHH
Confidence 1 222444445566677666666666555668899999999887
Q ss_pred HHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhc---c--CccEEEeccccccCCCCCCCc
Q 007774 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT---E--KKALLLSTDVAARGLDFPKVK 406 (590)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~---~--~~~vLiaTdv~~rGlDip~v~ 406 (590)
.+...+.+..... .+........++.|| +.+...+++---. | ..+|+|+|++++..+-+++|.
T Consensus 266 Ie~aC~~i~re~~--------~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv 333 (699)
T KOG0925|consen 266 IEDACRKISREVD--------NLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIV 333 (699)
T ss_pred HHHHHHHHHHHHH--------hhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEE
Confidence 7776666653210 111123356788888 2333333332221 2 457999999999999999999
Q ss_pred EEEEec------------------CCCChhHHHhhhccccCCCCCccEEEEeCc
Q 007774 407 CIIQYD------------------SAGEATEYVHRVGRTARLGERGDSLLFLQP 442 (590)
Q Consensus 407 ~VI~~d------------------~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~ 442 (590)
+||.-+ .|-|-.+--||.||+||. ++|.|..+++.
T Consensus 334 ~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 334 FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 999644 344667778999999987 78999988764
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.70 E-value=4.4e-15 Score=160.96 Aligned_cols=132 Identities=21% Similarity=0.252 Sum_probs=98.2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|+. |+++|.-+.=.+. +.-++.+.||.|||+++.+|++-..+ .|..+-||+++..||.+-++++..
T Consensus 72 ~lG~r-~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL---------~G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 72 TLGLR-HFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred HhCCC-CCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHh---------cCCceEEEeCCHHHHHHHHHHHHH
Confidence 46876 8899977754444 45799999999999999999964432 367799999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccC-----CCCCCceeEEEEechhhhh
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL 182 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~ll 182 (590)
+...++ +.++++.++.+....+.. -.++|+.+|...+ +|.|...- ......+.+.|+||||.++
T Consensus 140 vy~~LG-Lsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 140 IYRFLG-LTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHcC-CceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 988554 777888777665443332 4579999999755 34444321 1234578899999999754
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=9.4e-15 Score=167.03 Aligned_cols=133 Identities=15% Similarity=0.236 Sum_probs=90.9
Q ss_pred HHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhh
Q 007774 304 AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK 383 (590)
Q Consensus 304 ~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~ 383 (590)
..+...|..... ..+++++||++|.+..+.++..|...... .++.+.. . +++...|.+++++|+
T Consensus 738 ~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~-------------~~~~ll~-Q-g~~~~~r~~l~~~F~ 801 (928)
T PRK08074 738 EEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEEL-------------EGYVLLA-Q-GVSSGSRARLTKQFQ 801 (928)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccc-------------cCceEEe-c-CCCCCCHHHHHHHHH
Confidence 455555555442 24579999999999999999988753110 0222322 3 344456899999999
Q ss_pred ccCccEEEeccccccCCCCCC--CcEEEEecCCC----C--------------------------hhHHHhhhccccCCC
Q 007774 384 TEKKALLLSTDVAARGLDFPK--VKCIIQYDSAG----E--------------------------ATEYVHRVGRTARLG 431 (590)
Q Consensus 384 ~~~~~vLiaTdv~~rGlDip~--v~~VI~~d~p~----s--------------------------~~~yiqr~GRt~R~g 431 (590)
+++..||++|+...+|+|+|+ +++||....|. + ...+.|.+||.-|..
T Consensus 802 ~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~ 881 (928)
T PRK08074 802 QFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTE 881 (928)
T ss_pred hcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccC
Confidence 998999999999999999996 58888877664 1 222368889999987
Q ss_pred CCccEEEEeCcc--chHHHHHHH
Q 007774 432 ERGDSLLFLQPV--EMDYLQDLE 452 (590)
Q Consensus 432 ~~g~~i~~l~~~--e~~~~~~l~ 452 (590)
..-.+++++.+. ...|=+.+-
T Consensus 882 ~D~G~v~ilD~R~~~k~Yg~~~l 904 (928)
T PRK08074 882 TDRGTVFVLDRRLTTTSYGKYFL 904 (928)
T ss_pred CceEEEEEecCccccchHHHHHH
Confidence 654455555553 445544443
No 138
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.69 E-value=7.5e-17 Score=175.64 Aligned_cols=359 Identities=19% Similarity=0.237 Sum_probs=219.5
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCcchHHHH---HHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHH
Q 007774 40 EAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVA---YLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~---~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 112 (590)
.+++.+|.+.+.+++ .+.++|+....|.|||+. |+-.+++.... ..-.|||+|..-+ .-|...
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~---------~gpflvvvplst~-~~W~~e 438 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI---------HGPFLVVVPLSTI-TAWERE 438 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc---------cCCeEEEeehhhh-HHHHHH
Confidence 358999999998876 578999999999999975 44444444322 2237889997554 455666
Q ss_pred HHHHHhhcCCcceEEEEcCCchHHHHHH---h-cC-----CCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh
Q 007774 113 LHKLLHRFHWIVPGYVMGGENRSKEKAR---L-RK-----GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 113 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~-----~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
+..+.. + .+.+.+|........+. . .. .++++++|++.++.-- ..+.--.+.++++||||||-+
T Consensus 439 f~~w~~-m---n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk---~~L~~i~w~~~~vDeahrLkN 511 (1373)
T KOG0384|consen 439 FETWTD-M---NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK---AELSKIPWRYLLVDEAHRLKN 511 (1373)
T ss_pred HHHHhh-h---ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH---hhhccCCcceeeecHHhhcCc
Confidence 766652 2 23334443322222111 1 11 4789999999885422 122223678899999999875
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecc-cchHHHHHHhh-cCCCEEEecCCCCCCCC-----ccc
Q 007774 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVNHLAKIS-LETPVLIGLDEKKLPED-----KSH 256 (590)
Q Consensus 184 ~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~-~~~~~~l~~~~-l~~p~~i~~~~~~~~~~-----~~~ 256 (590)
-...+...+..+. -...+++|+|+ .+.+++|..+. +-.|............. ...
T Consensus 512 --~~~~l~~~l~~f~----------------~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~ 573 (1373)
T KOG0384|consen 512 --DESKLYESLNQFK----------------MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQV 573 (1373)
T ss_pred --hHHHHHHHHHHhc----------------ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHH
Confidence 3445555555554 34558889996 46777776543 23333222211110000 000
Q ss_pred cccc-----CccccchhhccCCCcccc----------------------------ccccccCCcc----------cceeE
Q 007774 257 VRFG-----SLESDVKEEVEHPSTTMR----------------------------STTEDFKLPA----------QLVQR 293 (590)
Q Consensus 257 ~~~~-----~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~----------~l~~~ 293 (590)
..+. .+-......++....... .... ...|. .-+|-
T Consensus 574 ~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~-g~~~~lLNimmELkKccNHp 652 (1373)
T KOG0384|consen 574 RKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAK-GSTPSLLNIMMELKKCCNHP 652 (1373)
T ss_pred HHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCC-CCCchHHHHHHHHHHhcCCc
Confidence 0000 000000000000000000 0000 00000 01111
Q ss_pred EEEec-----------------------CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCC
Q 007774 294 YVKVP-----------------------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQP 350 (590)
Q Consensus 294 ~~~~~-----------------------~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~ 350 (590)
|++-+ ...|+..|-.+|-.+- ..++++|||..-....+.++++|...
T Consensus 653 yLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk--~~GHrVLIFSQMVRmLDIL~eYL~~r-------- 722 (1373)
T KOG0384|consen 653 YLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLK--EGGHRVLIFSQMVRMLDILAEYLSLR-------- 722 (1373)
T ss_pred cccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHh--cCCceEEEhHHHHHHHHHHHHHHHHc--------
Confidence 22222 1233333333443332 45789999999999999999999866
Q ss_pred hhHHHhhhcCcceEeccCCCChHHHHHHHHHhhcc---CccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccc
Q 007774 351 DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE---KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRT 427 (590)
Q Consensus 351 ~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~---~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt 427 (590)
+++.-.|.|.+...-|...++.|... ....|+||-+.+-|||+...|.||.||.-|||..=.|.--|+
T Consensus 723 ---------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARa 793 (1373)
T KOG0384|consen 723 ---------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARA 793 (1373)
T ss_pred ---------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHH
Confidence 77888999999999999999999874 456899999999999999999999999999999999999999
Q ss_pred cCCCCCccEEE--EeCc--cchHHHHHHHH
Q 007774 428 ARLGERGDSLL--FLQP--VEMDYLQDLEK 453 (590)
Q Consensus 428 ~R~g~~g~~i~--~l~~--~e~~~~~~l~~ 453 (590)
.|.|+...+-+ |++. -|.++++.-..
T Consensus 794 HRIGQkk~VnVYRLVTk~TvEeEilERAk~ 823 (1373)
T KOG0384|consen 794 HRIGQKKHVNVYRLVTKNTVEEEILERAKL 823 (1373)
T ss_pred HhhcccceEEEEEEecCCchHHHHHHHHHH
Confidence 99998765544 5665 35666655443
No 139
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=1.3e-15 Score=135.00 Aligned_cols=144 Identities=46% Similarity=0.600 Sum_probs=107.8
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 136 (590)
+++++.++||+|||.+++.++.+.... ....+++|++|++.++.|+.+.+...... ......+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhH
Confidence 468999999999999999988887654 23567999999999999999999887653 455666766665555
Q ss_pred HHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCc
Q 007774 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216 (590)
Q Consensus 137 ~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~ 216 (590)
.......+.+|+++|++.+...+.... .....++++|+||+|.+....+............ ...
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~---------------~~~ 135 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP---------------KDR 135 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC---------------ccc
Confidence 555556779999999999988776532 3345788999999999877655443311222222 268
Q ss_pred eEEEEeecc
Q 007774 217 QNLLLSATL 225 (590)
Q Consensus 217 q~il~SAT~ 225 (590)
+++++|||+
T Consensus 136 ~~i~~saTp 144 (144)
T cd00046 136 QVLLLSATP 144 (144)
T ss_pred eEEEEeccC
Confidence 899999996
No 140
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.67 E-value=4.9e-15 Score=147.45 Aligned_cols=334 Identities=16% Similarity=0.167 Sum_probs=207.4
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 41 APTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 41 ~~t~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
.+-|+|.+.+...+ .|..+++...+|-|||+.++..+..... ....||+||. .|-..|.+.+..++..
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra----------EwplliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA----------EWPLLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh----------cCcEEEEecH-HHhHHHHHHHHHhccc
Confidence 45688999998866 5778999999999999988664443321 2348999997 5667788888888654
Q ss_pred cCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 120 FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 120 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
... +.++.++.+.-.. +.....|.|.+++.+..+-. .+....++++|+||.|.|-+. -....+.++..+..
T Consensus 267 ~~p--i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~ 337 (689)
T KOG1000|consen 267 IHP--IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKV 337 (689)
T ss_pred ccc--eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH---HHhcccceEEEEechhhhhcc-chhhhhhhhhHHHH
Confidence 433 3344454433211 22235688889887644322 123356899999999987664 33446666666654
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccc--hHH-----------------HHHHhhcC-CCEEEecCCCCCCCCcccccc
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNE--KVN-----------------HLAKISLE-TPVLIGLDEKKLPEDKSHVRF 259 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~--~~~-----------------~l~~~~l~-~p~~i~~~~~~~~~~~~~~~~ 259 (590)
-.++|++|+|+.- ..+ +++..++. .-+.+..+.....+.......
T Consensus 338 ---------------akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~l 402 (689)
T KOG1000|consen 338 ---------------AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAAL 402 (689)
T ss_pred ---------------hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHH
Confidence 5788999999731 111 11111111 111111111110000000000
Q ss_pred --cCcc-ccchhhccCCCccccccccccCCcccceeEEEEecC-------------------------------------
Q 007774 260 --GSLE-SDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC------------------------------------- 299 (590)
Q Consensus 260 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------- 299 (590)
..+. ...+. .--..+|..-.+..+.++.
T Consensus 403 L~k~lMIRRlK~------------dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tg 470 (689)
T KOG1000|consen 403 LFKRLMIRRLKA------------DVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTG 470 (689)
T ss_pred HHHHHHHHHHHH------------HHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhc
Confidence 0000 00000 0001223332222112111
Q ss_pred CChHHHHHHHHHhh--hcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHH
Q 007774 300 GSRLAVLLSILKHL--FDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (590)
Q Consensus 300 ~~k~~~L~~~l~~~--~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~ 377 (590)
..|+....+.|... +...++.|.+||+......+-+...+.+. ++....+.|..+..+|..
T Consensus 471 iaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r-----------------~vg~IRIDGst~s~~R~l 533 (689)
T KOG1000|consen 471 IAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKR-----------------KVGSIRIDGSTPSHRRTL 533 (689)
T ss_pred ccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHc-----------------CCCeEEecCCCCchhHHH
Confidence 22444444444331 12345679999999998888888888776 778889999999999999
Q ss_pred HHHHhhcc-CccE-EEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEE
Q 007774 378 TFGAFKTE-KKAL-LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLL 438 (590)
Q Consensus 378 ~~~~F~~~-~~~v-LiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~ 438 (590)
..+.|... ++.| +++-..++.|+++...+.||....+++|.-.+|.-.|+.|.|++..+-+
T Consensus 534 l~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 534 LCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred HHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeE
Confidence 99999875 4454 5677889999999999999999999999999999999999998654443
No 141
>COG4889 Predicted helicase [General function prediction only]
Probab=99.66 E-value=5.7e-17 Score=170.23 Aligned_cols=362 Identities=19% Similarity=0.176 Sum_probs=191.2
Q ss_pred CCCcHHHHHHHHHHhcC----CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 40 EAPTKVQAQAIPVILSG----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g----~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|+|+|+.||....+| ...=+.+.+|+|||++.+- +.+.+.. .++|+|+|+..|..|.......
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----------~~iL~LvPSIsLLsQTlrew~~ 228 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----------ARILFLVPSISLLSQTLREWTA 228 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----------hheEeecchHHHHHHHHHHHhh
Confidence 35999999999988764 2344566789999998876 4444432 5699999999999998877654
Q ss_pred HHhhcCCcceEEEEcCCch-----------------------HHHH--HHhcCCCcEEEECChHHHHHHhccCCCCCCce
Q 007774 116 LLHRFHWIVPGYVMGGENR-----------------------SKEK--ARLRKGISILVATPGRLLDHLKHTSSFLHTNL 170 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~-----------------------~~~~--~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l 170 (590)
-.. . .+....++...+. -..+ ..-..+..|+++|++.+...-.. ....+..+
T Consensus 229 ~~~-l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~f 305 (1518)
T COG4889 229 QKE-L-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDEF 305 (1518)
T ss_pred ccC-c-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCCc
Confidence 322 1 1222222222111 0111 11123467999999998655433 34456789
Q ss_pred eEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcC-CCEEEecCCCC
Q 007774 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-TPVLIGLDEKK 249 (590)
Q Consensus 171 ~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~-~p~~i~~~~~~ 249 (590)
+++|+|||||........+=..-+..+.... .-+....+.|+||+.-.-+......-. .....+.+.+.
T Consensus 306 DliicDEAHRTtGa~~a~dd~saFt~vHs~~----------niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~ 375 (1518)
T COG4889 306 DLIICDEAHRTTGATLAGDDKSAFTRVHSDQ----------NIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDEL 375 (1518)
T ss_pred cEEEecchhccccceecccCcccceeecCcc----------hhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhh
Confidence 9999999999765433221111111111100 001234478899974322222211111 11222222211
Q ss_pred CCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEec------CCChHHHHHHHHHhhh---------
Q 007774 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP------CGSRLAVLLSILKHLF--------- 314 (590)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~k~~~L~~~l~~~~--------- 314 (590)
.... .-.+++..+.-..+....... +.-..++..+...+.+...... .-.|+.-...-|.+.-
T Consensus 376 ~fGe-ef~rl~FgeAv~rdlLTDYKV-mvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~ 453 (1518)
T COG4889 376 TFGE-EFHRLGFGEAVERDLLTDYKV-MVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNI 453 (1518)
T ss_pred hhch-hhhcccHHHHHHhhhhccceE-EEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCC
Confidence 0000 000000000000000000000 0000000000011111100001 1112222222221110
Q ss_pred --cccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhc--CcceEeccCCCChHHHHHHHH---HhhccCc
Q 007774 315 --DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFL--RCKTFRLHGNMKQEDRRTTFG---AFKTEKK 387 (590)
Q Consensus 315 --~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~v~~lhg~~~~~~R~~~~~---~F~~~~~ 387 (590)
...+-.++|-||.+.++...+.+.|...... -.++...-++ .+.+-...|.|...+|..... .|...++
T Consensus 454 ~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~----Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~nec 529 (1518)
T COG4889 454 KADTAPMQRAIAFAKDIKTSKQIAESFETVVEA----YDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNEC 529 (1518)
T ss_pred cCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchh
Confidence 0112247888999888888877776543110 0112222233 445667889999999955443 4556788
Q ss_pred cEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCC
Q 007774 388 ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG 431 (590)
Q Consensus 388 ~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g 431 (590)
+||----++++|+|+|.++-||.||+-.+..+.+|.+||+.|..
T Consensus 530 kIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 530 KILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred eeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 99988899999999999999999999999999999999999964
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=4.1e-16 Score=145.37 Aligned_cols=154 Identities=25% Similarity=0.285 Sum_probs=103.1
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILS-------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~-------g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
+|+++|.+++..+.. ++.+++.+|||||||.+++..+.+... +++|++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------------ceeEecCHHHHHHHHHHHH
Confidence 389999999988873 689999999999999999876766642 6999999999999999999
Q ss_pred HHHHhhcCCcc----------eEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccC----------CCCCCceeEE
Q 007774 114 HKLLHRFHWIV----------PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS----------SFLHTNLRWI 173 (590)
Q Consensus 114 ~~~~~~~~~~~----------~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~----------~~~~~~l~~l 173 (590)
..+........ .....................+++++|...+........ .......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 76644211110 001111111122223334568899999999987765321 1233567899
Q ss_pred EEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeeccc
Q 007774 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (590)
Q Consensus 174 VlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~ 226 (590)
|+||||++.+.. ....++. .+ ...+++||||+.
T Consensus 151 I~DEaH~~~~~~---~~~~i~~-~~----------------~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDS---SYREIIE-FK----------------AAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHH---HHHHHHH-SS----------------CCEEEEEESS-S
T ss_pred EEehhhhcCCHH---HHHHHHc-CC----------------CCeEEEEEeCcc
Confidence 999999976533 1344444 22 678899999975
No 143
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.64 E-value=1.4e-15 Score=159.04 Aligned_cols=372 Identities=19% Similarity=0.248 Sum_probs=225.8
Q ss_pred CCCCCcHHHHHHHHHHh----cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 38 GFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
|+. +-+||.-.+.++. .+-+.|+....|-|||...+. .+..|... +....-|||||+.-|-+ |..++
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIa-FlayLkq~------g~~gpHLVVvPsSTleN-WlrEf 467 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIA-FLAYLKQI------GNPGPHLVVVPSSTLEN-WLREF 467 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHH-HHHHHHHc------CCCCCcEEEecchhHHH-HHHHH
Confidence 555 8899999998865 355789999999999965433 33334331 22344699999877643 34445
Q ss_pred HHHHhhcCCcceEEEEcCCchHHHH-HHhcC---CCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHH
Q 007774 114 HKLLHRFHWIVPGYVMGGENRSKEK-ARLRK---GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189 (590)
Q Consensus 114 ~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~---~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~ 189 (590)
.+| ++.+.+...+|......+. .++.+ +.+|+++|+.-...--.....+...+++++|+||+|.|-+++-+.
T Consensus 468 ~kw---CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR- 543 (941)
T KOG0389|consen 468 AKW---CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER- 543 (941)
T ss_pred HHh---CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHH-
Confidence 555 5667777777776443332 23332 489999998655321111112233578999999999877764322
Q ss_pred HHHHHHHhccCCCCCCCCCCCccccCceEEEEeecc-cchHHHHHHh-hcCCCEEEecCCCCCCC-------Ccccc---
Q 007774 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVNHLAKI-SLETPVLIGLDEKKLPE-------DKSHV--- 257 (590)
Q Consensus 190 l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~-~~~~~~l~~~-~l~~p~~i~~~~~~~~~-------~~~~~--- 257 (590)
..+|...+ ....+++++|+ .+++.+|..+ .+.-|.........+.. .....
T Consensus 544 ----y~~LM~I~-------------An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~ 606 (941)
T KOG0389|consen 544 ----YKHLMSIN-------------ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENA 606 (941)
T ss_pred ----HHHhcccc-------------ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHH
Confidence 22222221 45668999997 3556666553 22223332222111100 00000
Q ss_pred --------c-----------------ccCcccc----------------chhhccCCC---ccccccccccC--------
Q 007774 258 --------R-----------------FGSLESD----------------VKEEVEHPS---TTMRSTTEDFK-------- 285 (590)
Q Consensus 258 --------~-----------------~~~~~~~----------------~~~~~~~~~---~~~~~~~~~~~-------- 285 (590)
+ +...... ..+.++... .......+...
T Consensus 607 ~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlR 686 (941)
T KOG0389|consen 607 LLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLR 686 (941)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHH
Confidence 0 0000000 000000000 00000000000
Q ss_pred --------------------------------------------------CcccceeEE----EEe-----cCCChHHHH
Q 007774 286 --------------------------------------------------LPAQLVQRY----VKV-----PCGSRLAVL 306 (590)
Q Consensus 286 --------------------------------------------------~~~~l~~~~----~~~-----~~~~k~~~L 306 (590)
+..-..++- ... -...|...|
T Consensus 687 K~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L 766 (941)
T KOG0389|consen 687 KAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKL 766 (941)
T ss_pred HHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHH
Confidence 000000000 000 014577777
Q ss_pred HHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccC
Q 007774 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK 386 (590)
Q Consensus 307 ~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~ 386 (590)
..+|.... ..+.+++||..-....+.+...|..+ ++....|.|.....+|+.++.+|...+
T Consensus 767 ~~LLp~~k--~~G~RVLiFSQFTqmLDILE~~L~~l-----------------~~~ylRLDGsTqV~~RQ~lId~Fn~d~ 827 (941)
T KOG0389|consen 767 KELLPKIK--KKGDRVLIFSQFTQMLDILEVVLDTL-----------------GYKYLRLDGSTQVNDRQDLIDEFNTDK 827 (941)
T ss_pred HHHHHHHh--hcCCEEEEeeHHHHHHHHHHHHHHhc-----------------CceEEeecCCccchHHHHHHHhhccCC
Confidence 77777654 34689999999998888888888776 888999999999999999999998764
Q ss_pred -c-cEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEE--eCccc-hHHHHHHHHcCCCC
Q 007774 387 -K-ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF--LQPVE-MDYLQDLEKHGVSL 458 (590)
Q Consensus 387 -~-~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~--l~~~e-~~~~~~l~~~~~~~ 458 (590)
+ -.|++|-..+-|||+...++||.+|+..+|-+=.|.-.|+.|.|+...+.++ ++..- .+.+..+.+.++.+
T Consensus 828 difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~L 904 (941)
T KOG0389|consen 828 DIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLAL 904 (941)
T ss_pred ceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhh
Confidence 3 4588999999999999999999999999999999999999999998776664 55432 45566666655543
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.63 E-value=2.6e-13 Score=150.52 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHH
Q 007774 302 RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGA 381 (590)
Q Consensus 302 k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~ 381 (590)
-...+...+...+. .++.++||++|.+..+.++..|.... +..++ .+|.. .|..+++.
T Consensus 519 ~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~----------------~~~ll-~Q~~~---~~~~ll~~ 576 (697)
T PRK11747 519 HTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL----------------RLMLL-VQGDQ---PRQRLLEK 576 (697)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc----------------CCcEE-EeCCc---hHHHHHHH
Confidence 34566666666654 34568999999999999988886421 33333 36642 56778877
Q ss_pred hhc----cCccEEEeccccccCCCCCC--CcEEEEecCCC----Ch--------------------------hHHHhhhc
Q 007774 382 FKT----EKKALLLSTDVAARGLDFPK--VKCIIQYDSAG----EA--------------------------TEYVHRVG 425 (590)
Q Consensus 382 F~~----~~~~vLiaTdv~~rGlDip~--v~~VI~~d~p~----s~--------------------------~~yiqr~G 425 (590)
|++ ++..||++|..+.+|||+|+ +++||...+|. ++ ..+.|.+|
T Consensus 577 f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~G 656 (697)
T PRK11747 577 HKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVG 656 (697)
T ss_pred HHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Confidence 764 67889999999999999996 78999887663 21 12258889
Q ss_pred cccCCCCCccEEEEeCc
Q 007774 426 RTARLGERGDSLLFLQP 442 (590)
Q Consensus 426 Rt~R~g~~g~~i~~l~~ 442 (590)
|.-|....--+++++.+
T Consensus 657 RlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 657 RLIRSEQDRGRVTILDR 673 (697)
T ss_pred cccccCCceEEEEEEcc
Confidence 99887654434555555
No 145
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=1.8e-13 Score=148.33 Aligned_cols=132 Identities=21% Similarity=0.236 Sum_probs=100.3
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|.. |+++|.-+-=.+..| -++.+.||-||||++.+|++-..+. |..+-||+++..||..=++++..
T Consensus 81 ~lG~r-~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~ 148 (939)
T PRK12902 81 VLGMR-HFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQ 148 (939)
T ss_pred HhCCC-cchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHH
Confidence 36765 888887776555555 6899999999999999998865543 67799999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-----HHHHhcc-CCCCCCceeEEEEechhhhh
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-----LDHLKHT-SSFLHTNLRWIIFDEADRIL 182 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-----~~~l~~~-~~~~~~~l~~lVlDEah~ll 182 (590)
+...+ .+.++++.++.+... ++..-.++|+.||++.+ .|.+... .......+.+.|+||||.+|
T Consensus 149 vy~~L-GLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 149 VHRFL-GLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHh-CCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 98855 477787776654432 33345789999999987 5555431 22345678899999999865
No 146
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=6.8e-14 Score=141.43 Aligned_cols=282 Identities=19% Similarity=0.206 Sum_probs=170.1
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~ 135 (590)
.+-++-.+||.||||.-+ ++++.. ...+++.-|.|-||.++++.++...- ...+++|.+...
T Consensus 191 RkIi~H~GPTNSGKTy~A----Lqrl~~---------aksGvycGPLrLLA~EV~~r~na~gi-----pCdL~TGeE~~~ 252 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRA----LQRLKS---------AKSGVYCGPLRLLAHEVYDRLNALGI-----PCDLLTGEERRF 252 (700)
T ss_pred heEEEEeCCCCCchhHHH----HHHHhh---------hccceecchHHHHHHHHHHHhhhcCC-----Cccccccceeee
Confidence 345788999999999654 455543 34589999999999999999987643 344555554332
Q ss_pred HHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccC
Q 007774 136 KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVK 215 (590)
Q Consensus 136 ~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~ 215 (590)
..-. ...++.+-||.+.+- .-..+++.||||.+.|.|...+-.....+--+... .
T Consensus 253 ~~~~--~~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad--------------E 307 (700)
T KOG0953|consen 253 VLDN--GNPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD--------------E 307 (700)
T ss_pred cCCC--CCcccceEEEEEEee---------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhh--------------h
Confidence 2111 112566667755431 11478899999999998876554444333222210 1
Q ss_pred ceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEE
Q 007774 216 RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYV 295 (590)
Q Consensus 216 ~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (590)
.+.-+=-|- -+-++.+.+....+ +.+ +.|.
T Consensus 308 iHLCGepsv-ldlV~~i~k~TGd~-vev------------------------------------------------~~Ye 337 (700)
T KOG0953|consen 308 IHLCGEPSV-LDLVRKILKMTGDD-VEV------------------------------------------------REYE 337 (700)
T ss_pred hhccCCchH-HHHHHHHHhhcCCe-eEE------------------------------------------------Eeec
Confidence 111100000 01122222211111 110 1111
Q ss_pred EecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHH
Q 007774 296 KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (590)
Q Consensus 296 ~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R 375 (590)
...+-.-...+..-+.. -.++.|||-++-.+.- .+...+.+.+ +..+..+.|++++..|
T Consensus 338 Rl~pL~v~~~~~~sl~n----lk~GDCvV~FSkk~I~-~~k~kIE~~g----------------~~k~aVIYGsLPPeTr 396 (700)
T KOG0953|consen 338 RLSPLVVEETALGSLSN----LKPGDCVVAFSKKDIF-TVKKKIEKAG----------------NHKCAVIYGSLPPETR 396 (700)
T ss_pred ccCcceehhhhhhhhcc----CCCCCeEEEeehhhHH-HHHHHHHHhc----------------CcceEEEecCCCCchh
Confidence 11111111122222222 3467888877766543 2333343331 4458889999999999
Q ss_pred HHHHHHhhc--cCccEEEeccccccCCCCCCCcEEEEecCC---------CChhHHHhhhccccCCCC---CccEEEEeC
Q 007774 376 RTTFGAFKT--EKKALLLSTDVAARGLDFPKVKCIIQYDSA---------GEATEYVHRVGRTARLGE---RGDSLLFLQ 441 (590)
Q Consensus 376 ~~~~~~F~~--~~~~vLiaTdv~~rGlDip~v~~VI~~d~p---------~s~~~yiqr~GRt~R~g~---~g~~i~~l~ 441 (590)
.+....|++ ++.+||||||..++|+|+ +++.||.|+.- -...+..|.+||+||.|. .|.+..| .
T Consensus 397 ~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~ 474 (700)
T KOG0953|consen 397 LAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL-H 474 (700)
T ss_pred HHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe-e
Confidence 999999998 889999999999999999 99999998854 367888999999999974 4555444 3
Q ss_pred ccchHHHHHHHH
Q 007774 442 PVEMDYLQDLEK 453 (590)
Q Consensus 442 ~~e~~~~~~l~~ 453 (590)
..+..++...-+
T Consensus 475 ~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 475 SEDLKLLKRILK 486 (700)
T ss_pred HhhHHHHHHHHh
Confidence 345555555444
No 147
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.58 E-value=5.2e-15 Score=118.09 Aligned_cols=72 Identities=42% Similarity=0.713 Sum_probs=69.9
Q ss_pred CcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCC
Q 007774 360 RCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG 431 (590)
Q Consensus 360 ~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g 431 (590)
++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|++++||.+++|++...|.|++||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999986
No 148
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=4.1e-13 Score=150.03 Aligned_cols=121 Identities=17% Similarity=0.270 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHH
Q 007774 302 RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGA 381 (590)
Q Consensus 302 k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~ 381 (590)
-...+...+...... .+++++|||+|-+..+.+++.+..... . -....+|.. .+...++.
T Consensus 463 ~~~~~~~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~---------------~-~~v~~q~~~---~~~~~l~~ 522 (654)
T COG1199 463 LLAKLAAYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDERS---------------T-LPVLTQGED---EREELLEK 522 (654)
T ss_pred HHHHHHHHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCc---------------c-ceeeecCCC---cHHHHHHH
Confidence 344455555555443 345999999999999999999876421 1 123345544 45588888
Q ss_pred hhccCc-cEEEeccccccCCCCCC--CcEEEEecCCC------------------------------ChhHHHhhhcccc
Q 007774 382 FKTEKK-ALLLSTDVAARGLDFPK--VKCIIQYDSAG------------------------------EATEYVHRVGRTA 428 (590)
Q Consensus 382 F~~~~~-~vLiaTdv~~rGlDip~--v~~VI~~d~p~------------------------------s~~~yiqr~GRt~ 428 (590)
|+++.- .++|+|..+++|+|+|+ +..||..+.|. -.....|.+||.-
T Consensus 523 f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlI 602 (654)
T COG1199 523 FKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLI 602 (654)
T ss_pred HHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhcccc
Confidence 888765 99999999999999986 67888888774 2334479999999
Q ss_pred CCCCCccEEEEeCc
Q 007774 429 RLGERGDSLLFLQP 442 (590)
Q Consensus 429 R~g~~g~~i~~l~~ 442 (590)
|.-...-+++++..
T Consensus 603 R~~~D~G~ivllD~ 616 (654)
T COG1199 603 RSEDDRGVIVLLDK 616 (654)
T ss_pred ccCCCceEEEEecc
Confidence 96544333444433
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.55 E-value=1.6e-13 Score=149.48 Aligned_cols=314 Identities=12% Similarity=0.066 Sum_probs=177.8
Q ss_pred EEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH--
Q 007774 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE-- 137 (590)
Q Consensus 60 lv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~-- 137 (590)
+..+.+|||||.+|+-.+.+.+.. |..+|||+|...|..|+.+.++..+ +...+..++.+.+....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f---~~~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALL---GAGDVAVLSAGLGPADRYR 231 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHc---CCCcEEEECCCCCHHHHHH
Confidence 444446999999999988777743 6779999999999999999998774 32335556665544332
Q ss_pred -HHHhcCC-CcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhh--hc-Cc---hHHHHHHHHHhccCCCCCCCCCC
Q 007774 138 -KARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL--EL-GF---GKEIEEILDILGSRNIGSIGEGN 209 (590)
Q Consensus 138 -~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll--~~-gf---~~~l~~il~~l~~~~~~~~~~~~ 209 (590)
+..+..| ..|+|||-.-++ ..+.++++||+||-|.-. +. +. ..++........
T Consensus 232 ~w~~~~~G~~~IViGtRSAvF--------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~----------- 292 (665)
T PRK14873 232 RWLAVLRGQARVVVGTRSAVF--------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH----------- 292 (665)
T ss_pred HHHHHhCCCCcEEEEcceeEE--------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc-----------
Confidence 3334444 899999965443 245789999999998532 11 11 133333333332
Q ss_pred CccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCccc
Q 007774 210 EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQ 289 (590)
Q Consensus 210 ~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (590)
...+++.|||++-.....+..+. ...+.............+...+... . .
T Consensus 293 -----~~~lvLgSaTPSles~~~~~~g~--~~~~~~~~~~~~~~~P~v~~vd~~~-------------------~----~ 342 (665)
T PRK14873 293 -----GCALLIGGHARTAEAQALVESGW--AHDLVAPRPVVRARAPRVRALGDSG-------------------L----A 342 (665)
T ss_pred -----CCcEEEECCCCCHHHHHHHhcCc--ceeeccccccccCCCCeEEEEeCch-------------------h----h
Confidence 68899999998755544433221 1111111100000000000000000 0 0
Q ss_pred ceeEEEEecCC-ChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhh-------------------------cc
Q 007774 290 LVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE-------------------------FQ 343 (590)
Q Consensus 290 l~~~~~~~~~~-~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~-------------------------~~ 343 (590)
+... ..... .-...+...+++.+. .+ .+|||.|.+-.+-++...=+. ++
T Consensus 343 ~~~~--~~~~g~~ls~~l~~~i~~~L~--~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG 417 (665)
T PRK14873 343 LERD--PAARAARLPSLAFRAARDALE--HG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCG 417 (665)
T ss_pred hccc--cccccCccCHHHHHHHHHHHh--cC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCc
Confidence 0000 00000 011345555665552 34 889988864332222111000 00
Q ss_pred CC-----C---C-----------CCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc----ccccCC
Q 007774 344 WS-----P---H-----------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD----VAARGL 400 (590)
Q Consensus 344 ~~-----~---~-----------~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd----v~~rGl 400 (590)
.. + + ...++++...||+.++..+.++ .+++.|. ++.+|||+|+ +++
T Consensus 418 ~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d-------~~l~~~~-~~~~IlVGTqgaepm~~--- 486 (665)
T PRK14873 418 RAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD-------QVVDTVD-AGPALVVATPGAEPRVE--- 486 (665)
T ss_pred CCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChH-------HHHHhhc-cCCCEEEECCCCccccc---
Confidence 00 0 0 0115667778999999886553 4788996 5999999999 665
Q ss_pred CCCCCcEEEEecCCC------------ChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHH
Q 007774 401 DFPKVKCIIQYDSAG------------EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (590)
Q Consensus 401 Dip~v~~VI~~d~p~------------s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~ 453 (590)
++++.|+..|.-. ....+.|-+||+||.+..|.+++...|.. ..++.+..
T Consensus 487 --g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~~-~~~~~l~~ 548 (665)
T PRK14873 487 --GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESSL-PTVQALIR 548 (665)
T ss_pred --CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCC-HHHHHHHh
Confidence 3677777666432 23445788899999999999998754443 34444443
No 150
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.54 E-value=7.4e-13 Score=144.77 Aligned_cols=361 Identities=16% Similarity=0.188 Sum_probs=222.1
Q ss_pred ccccccccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHh-cCCcEEEEccCcchHHHHHHHHHHHHHhhc
Q 007774 6 KKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSY 84 (590)
Q Consensus 6 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~l~pil~~l~~~ 84 (590)
+|-..-.++++..+..-++|.-.....|.. ...++|.++.+.+- .+.++++.||+|||||.++-+.++.
T Consensus 1113 ek~p~pt~lld~~~~~~~~l~N~~~~~lf~-----~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----- 1182 (1674)
T KOG0951|consen 1113 EKYPPPTELLDLQPLPVSALRNPSFETLFQ-----DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----- 1182 (1674)
T ss_pred ccCCCCchhhhccccchhccCCcchhhhcc-----ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----
Confidence 344444455555544444554444444422 23789999998876 4668999999999999998887765
Q ss_pred CCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCC
Q 007774 85 SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS 164 (590)
Q Consensus 85 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~ 164 (590)
.....++++++|..+.+..++..+.+-........+..+ ||+..-+.+ +....+|+|+||.++-.+ +
T Consensus 1183 -----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l-~ge~s~~lk--l~~~~~vii~tpe~~d~l-q---- 1249 (1674)
T KOG0951|consen 1183 -----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKL-TGETSLDLK--LLQKGQVIISTPEQWDLL-Q---- 1249 (1674)
T ss_pred -----CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEec-CCccccchH--HhhhcceEEechhHHHHH-h----
Confidence 134577999999999998887666555443444444444 444332222 223468999999998544 2
Q ss_pred CCCCceeEEEEechhhhhhcC---ch--HHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCC
Q 007774 165 FLHTNLRWIIFDEADRILELG---FG--KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET 239 (590)
Q Consensus 165 ~~~~~l~~lVlDEah~ll~~g---f~--~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~ 239 (590)
....+++.|.||+|.+.+.. ++ -.++.|-..+-+ ..+++.+|..+.+.-. + +++..
T Consensus 1250 -~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k---------------~ir~v~ls~~lana~d-~--ig~s~ 1310 (1674)
T KOG0951|consen 1250 -SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEK---------------KIRVVALSSSLANARD-L--IGASS 1310 (1674)
T ss_pred -hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHh---------------heeEEEeehhhccchh-h--ccccc
Confidence 44688999999999776321 11 126777777765 6888999888765322 2 23322
Q ss_pred CEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCccccee-EEEEecCCChHH----HHHHHHHhhh
Q 007774 240 PVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQ-RYVKVPCGSRLA----VLLSILKHLF 314 (590)
Q Consensus 240 p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~k~~----~L~~~l~~~~ 314 (590)
...+.+.... ...|..++- .+-......+.. -....+..+.
T Consensus 1311 ~~v~Nf~p~~----------------------------------R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a 1356 (1674)
T KOG0951|consen 1311 SGVFNFSPSV----------------------------------RPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA 1356 (1674)
T ss_pred cceeecCccc----------------------------------CCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh
Confidence 3333332221 112222211 111111112211 1223333333
Q ss_pred cccCCceEEEEecchhhHHHHHHhhhhccCCCC--------CCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccC
Q 007774 315 DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH--------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK 386 (590)
Q Consensus 315 ~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~ 386 (590)
..+.+.+||+++++.+.+++.-+-.+..... ..-+..+.+.+ +...-|-+++..+..-+-.-|..|.
T Consensus 1357 --~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l---~~gvg~e~~s~~d~~iv~~l~e~g~ 1431 (1674)
T KOG0951|consen 1357 --GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESL---KHGVGHEGLSSNDQEIVQQLFEAGA 1431 (1674)
T ss_pred --cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcc---cccccccccCcchHHHHHHHHhcCc
Confidence 3568999999999999988876654432211 00011112222 1222288999999999999999999
Q ss_pred ccEEEeccccccCCCCCCCcEEEE-----ec------CCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHH
Q 007774 387 KALLLSTDVAARGLDFPKVKCIIQ-----YD------SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 387 ~~vLiaTdv~~rGlDip~v~~VI~-----~d------~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~ 452 (590)
+.|+|...- ..|+-.. .+.||- || .+-+..+..|++|++.| .|.|+++.......|++..-
T Consensus 1432 i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1432 IQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred EEEEEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhc
Confidence 999887655 6676652 344442 33 34468889999999998 57899999888877776653
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=2.9e-12 Score=143.42 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=62.6
Q ss_pred hCCCCCCcHHHHHHHHHH----hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVI----LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~i----l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
.|+|..++|.|.+.+..+ ..++++++.||||+|||++.+.|++...... ....++++++.|..-..|..+
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHH
Confidence 378987899999987654 4688999999999999999999999876532 123679999999998889888
Q ss_pred HHHHHH
Q 007774 112 ILHKLL 117 (590)
Q Consensus 112 ~~~~~~ 117 (590)
+++++.
T Consensus 79 Elk~~~ 84 (705)
T TIGR00604 79 ELRKLM 84 (705)
T ss_pred HHHhhh
Confidence 888753
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.51 E-value=8.9e-13 Score=145.07 Aligned_cols=348 Identities=17% Similarity=0.117 Sum_probs=183.9
Q ss_pred CcHHHHHHHHHHhc--------CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 42 PTKVQAQAIPVILS--------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 42 ~t~~Q~~~i~~il~--------g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
-+.||-+|...+.. |-=++--|.||+|||++=.-.|.. |.. ...|.+..|..-.|.|-.|+-+.+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImya-Lsd------~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYA-LRD------DKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHH-hCC------CCCCceEEEEccccceeccchHHH
Confidence 35699999988764 112577899999999986553333 221 246788999999999999999999
Q ss_pred HHHHhhcCCcceEEEEcCCchHHHH-------------------------------------------HHhcC-------
Q 007774 114 HKLLHRFHWIVPGYVMGGENRSKEK-------------------------------------------ARLRK------- 143 (590)
Q Consensus 114 ~~~~~~~~~~~~~~~~gg~~~~~~~-------------------------------------------~~l~~------- 143 (590)
++-+. +......+++||....... ..+.+
T Consensus 482 r~rL~-L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 482 KTRLN-LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHhcC-CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 88765 4444455555553222111 00000
Q ss_pred -CCcEEEECChHHHHHHhccC--CCCCC----ceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCc
Q 007774 144 -GISILVATPGRLLDHLKHTS--SFLHT----NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216 (590)
Q Consensus 144 -~~~IlV~Tp~rl~~~l~~~~--~~~~~----~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~ 216 (590)
...|+|||+..++-...... ...+. .-+.|||||+|-.-.. -...+..++.-+.. ...
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~--------------lG~ 625 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGL--------------LGS 625 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHH--------------cCC
Confidence 13499999999876653211 11111 1246999999962211 11223333332222 168
Q ss_pred eEEEEeecccchHHH-HHHhhc----------CC---CEEEec-CCCCCCCCcc-cccccCccccchhhccCCCcccccc
Q 007774 217 QNLLLSATLNEKVNH-LAKISL----------ET---PVLIGL-DEKKLPEDKS-HVRFGSLESDVKEEVEHPSTTMRST 280 (590)
Q Consensus 217 q~il~SAT~~~~~~~-l~~~~l----------~~---p~~i~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (590)
.++++|||+|+.+.. +...+. .. |..|.. ..+....... ......+...-...+. ...
T Consensus 626 ~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~------~R~ 699 (1110)
T TIGR02562 626 RVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLR------DRA 699 (1110)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHH------HHH
Confidence 899999999976544 333221 11 111111 1110000000 0000000000000000 000
Q ss_pred ccccCCcccceeEEEEecCCC-----hHHHHHHHHHhhh----c----cc--CCce---EEEEecchhhHHHHHHhhhhc
Q 007774 281 TEDFKLPAQLVQRYVKVPCGS-----RLAVLLSILKHLF----D----TE--VSQK---LVVFFSTCDAVDFHYSLLSEF 342 (590)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~~~-----k~~~L~~~l~~~~----~----~~--~~~k---~iVF~~t~~~~~~~~~~l~~~ 342 (590)
..-...|..-.-..+.++... ....+...+.+.. . .. .+.+ .+|-+++.+.+-.++..|-..
T Consensus 700 ~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~ 779 (1110)
T TIGR02562 700 VQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYAL 779 (1110)
T ss_pred HHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhh
Confidence 000111111111222222221 2223333332211 0 11 1122 356666666555555555443
Q ss_pred cCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHh----------------------hc----cCccEEEecccc
Q 007774 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF----------------------KT----EKKALLLSTDVA 396 (590)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F----------------------~~----~~~~vLiaTdv~ 396 (590)
....+ ..+.+.++|+......|..+.+.. .+ +...|+|+|+|.
T Consensus 780 ~~~~~-----------~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~ 848 (1110)
T TIGR02562 780 LAEEK-----------YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVE 848 (1110)
T ss_pred ccccC-----------CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeE
Confidence 32211 245688899999888887665443 11 356799999999
Q ss_pred ccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCC
Q 007774 397 ARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGE 432 (590)
Q Consensus 397 ~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~ 432 (590)
+.|+|+ +.+|+|- -|.+....+||+||+.|.|.
T Consensus 849 E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 849 EVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred EEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 999998 7777764 46679999999999999875
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.49 E-value=3.8e-12 Score=126.94 Aligned_cols=137 Identities=19% Similarity=0.219 Sum_probs=107.8
Q ss_pred CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 300 ~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
..|+.+|.+-|..........|.|||.......+.+...|.+. |+.+..|.|+|+...|..++
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka-----------------GfscVkL~GsMs~~ardati 681 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA-----------------GFSCVKLVGSMSPAARDATI 681 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc-----------------CceEEEeccCCChHHHHHHH
Confidence 4577777776666555555679999999888888888888777 88999999999999999999
Q ss_pred HHhhcc-CccE-EEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCC--ccEEEEeCcc--chHHHHHHHH
Q 007774 380 GAFKTE-KKAL-LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGER--GDSLLFLQPV--EMDYLQDLEK 453 (590)
Q Consensus 380 ~~F~~~-~~~v-LiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~--g~~i~~l~~~--e~~~~~~l~~ 453 (590)
+.|.+. .+.| |++-...+.-+|+...+.|+.+||-|++..-.|.-.|..|.|+. -.++-|+... |...+...++
T Consensus 682 k~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 682 KYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred HHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 999986 4555 55667777778999999999999999999999999999999864 4555566553 4444444433
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.48 E-value=4e-11 Score=122.91 Aligned_cols=313 Identities=15% Similarity=0.149 Sum_probs=205.0
Q ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhh-------------cCC------cceEEEEcCCchHHHHHHhcC---------
Q 007774 92 SGTFALVLVPTRELCLQVYEILHKLLHR-------------FHW------IVPGYVMGGENRSKEKARLRK--------- 143 (590)
Q Consensus 92 ~~~~~lil~PtreLa~Q~~~~~~~~~~~-------------~~~------~~~~~~~gg~~~~~~~~~l~~--------- 143 (590)
..+++|||+|+|..|.++.+.+-+++.. ++. .....-..+....+.......
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 3588999999999999999998877643 110 000000000111111111111
Q ss_pred ---------------CCcEEEECChHHHHHHhc-----cCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCC
Q 007774 144 ---------------GISILVATPGRLLDHLKH-----TSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIG 203 (590)
Q Consensus 144 ---------------~~~IlV~Tp~rl~~~l~~-----~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~ 203 (590)
+.|||||+|=-|...+.. ...-.+++++++|+|.||-|+..+| +.+..+++++......
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCC
Confidence 357999999888777764 1223678999999999998776665 5667777777765543
Q ss_pred CCC---------CCCCccccCceEEEEeecccchHHHHHHhhcCCCEE-EecCCCCCCCCcccccccCccccchhhccCC
Q 007774 204 SIG---------EGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVL-IGLDEKKLPEDKSHVRFGSLESDVKEEVEHP 273 (590)
Q Consensus 204 ~~~---------~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (590)
+.+ ......+.-+|++++|+..++.+..+....+.|..- +.+......
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~---------------------- 252 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA---------------------- 252 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc----------------------
Confidence 322 111223456899999999999999998876665422 222111100
Q ss_pred CccccccccccCCcccceeEEEEecCC-------ChHHHHHHHHHhhhc-ccCCceEEEEecchhhHHHHHHhhhhccCC
Q 007774 274 STTMRSTTEDFKLPAQLVQRYVKVPCG-------SRLAVLLSILKHLFD-TEVSQKLVVFFSTCDAVDFHYSLLSEFQWS 345 (590)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~k~~~L~~~l~~~~~-~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~ 345 (590)
......+...+.|.+..++.. .++.....-+.-.+. ......+|||++|--.--.+.++|+..
T Consensus 253 ------~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~--- 323 (442)
T PF06862_consen 253 ------SGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE--- 323 (442)
T ss_pred ------ceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---
Confidence 000012445566777665543 233333332222222 345679999999977666777788754
Q ss_pred CCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccc--cCCCCCCCcEEEEecCCCChhHHHhh
Q 007774 346 PHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAA--RGLDFPKVKCIIQYDSAGEATEYVHR 423 (590)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~--rGlDip~v~~VI~~d~p~s~~~yiqr 423 (590)
++....+|--.++.+-.++-..|..|+..||+.|.-+- +-..+.++..||.|++|..+.-|...
T Consensus 324 --------------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El 389 (442)
T PF06862_consen 324 --------------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSEL 389 (442)
T ss_pred --------------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHH
Confidence 67788889999999999999999999999999998653 56777889999999999999999888
Q ss_pred hccccCCCC------CccEEEEeCccchHHHHH
Q 007774 424 VGRTARLGE------RGDSLLFLQPVEMDYLQD 450 (590)
Q Consensus 424 ~GRt~R~g~------~g~~i~~l~~~e~~~~~~ 450 (590)
++-.+.... ...+.++++.-|.--|+.
T Consensus 390 ~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 390 LNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred HhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 755444332 467777777766554443
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.46 E-value=2.6e-12 Score=133.31 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=96.0
Q ss_pred ecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHH
Q 007774 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (590)
Q Consensus 297 ~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~ 376 (590)
.....|+...+..+..++ .....+++|...=......+...++.. +.....+||....++|+
T Consensus 725 ~r~S~Ki~~~l~~le~i~-~~skeK~viVSQwtsvLniv~~hi~~~-----------------g~~y~si~Gqv~vK~Rq 786 (901)
T KOG4439|consen 725 DRPSCKIAMVLEILETIL-TSSKEKVVIVSQWTSVLNIVRKHIQKG-----------------GHIYTSITGQVLVKDRQ 786 (901)
T ss_pred ccchhHHHHHHHHHHHHh-hcccceeeehhHHHHHHHHHHHHHhhC-----------------CeeeeeecCccchhHHH
Confidence 335567777777777763 244567766544444444444556555 66778899999999999
Q ss_pred HHHHHhhc--cCccE-EEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEE
Q 007774 377 TTFGAFKT--EKKAL-LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (590)
Q Consensus 377 ~~~~~F~~--~~~~v-LiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~ 439 (590)
.+++.|.. |...| |++-...+.|||+-+.+++|..|+-|+|.---|...|..|+|+...+++.
T Consensus 787 ~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 787 EIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred HHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 99999975 33455 55667788999999999999999999999999999999999998887764
No 156
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.6e-11 Score=134.76 Aligned_cols=125 Identities=17% Similarity=0.239 Sum_probs=96.4
Q ss_pred CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
...|..+++.-+.... ..+.++||-+.|++..+.+..+|... +++.-.|++.....+-.-+
T Consensus 610 ~~eK~~Aii~ei~~~~--~~GrPVLVGT~SVe~SE~lS~~L~~~-----------------gI~H~VLNAK~h~~EAeIV 670 (1112)
T PRK12901 610 KREKYNAVIEEITELS--EAGRPVLVGTTSVEISELLSRMLKMR-----------------KIPHNVLNAKLHQKEAEIV 670 (1112)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCEEEEeCcHHHHHHHHHHHHHc-----------------CCcHHHhhccchhhHHHHH
Confidence 3457777777776655 46789999999999999999999886 5555556665443333333
Q ss_pred HHHhhccCccEEEeccccccCCCCC---CC-----cEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 379 FGAFKTEKKALLLSTDVAARGLDFP---KV-----KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~~rGlDip---~v-----~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
-+.=+ ...|-|||++|+||-||. .| =+||-...+.|..---|-.||+||.|.+|.+-.|++-.|
T Consensus 671 A~AG~--~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 671 AEAGQ--PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HhcCC--CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 33322 347999999999999994 22 278888899999999999999999999999999987654
No 157
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.36 E-value=5e-12 Score=136.04 Aligned_cols=353 Identities=18% Similarity=0.231 Sum_probs=205.8
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILS----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~----g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.+.+||...+.++.+ +=+.++...+|.|||..-+.-+...+.. . ....--||+||+-.|.+.. .++..+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~-K-----~~~GP~LvivPlstL~NW~-~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEH-K-----QMQGPFLIIVPLSTLVNWS-SEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHH-c-----ccCCCeEEeccccccCCch-hhcccc
Confidence 689999999988763 3367999999999998765544443322 1 1223369999998886654 444443
Q ss_pred HhhcCCcceEEEEcCCchHH--H-HHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHH
Q 007774 117 LHRFHWIVPGYVMGGENRSK--E-KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~--~-~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~i 193 (590)
...+....+.|..... . ......+.+|+++|+..+.. ....+.--.+.++||||.|||-+ ....+...
T Consensus 467 ----aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~ 537 (1157)
T KOG0386|consen 467 ----APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKN--AICKLTDT 537 (1157)
T ss_pred ----ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccc--hhhHHHHH
Confidence 2233344444433211 1 12223458999999988754 11112223677899999999765 33344444
Q ss_pred HHHhccCCCCCCCCCCCccccCceEEEEeecccc-hHHHHHH-hhcCCCEEEecCCCCCCCCccc-------cc------
Q 007774 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAK-ISLETPVLIGLDEKKLPEDKSH-------VR------ 258 (590)
Q Consensus 194 l~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~-~~~~l~~-~~l~~p~~i~~~~~~~~~~~~~-------~~------ 258 (590)
+..--. ....+++++|+-. ...++-. +.+--|.+.........++..+ ..
T Consensus 538 L~t~y~---------------~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEt 602 (1157)
T KOG0386|consen 538 LNTHYR---------------AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEET 602 (1157)
T ss_pred hhcccc---------------chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHH
Confidence 332111 3445778888742 2222111 1111222211110000000000 00
Q ss_pred ----------c---------cCccccchhhccCCCcccc-------------------c---ccccc-------------
Q 007774 259 ----------F---------GSLESDVKEEVEHPSTTMR-------------------S---TTEDF------------- 284 (590)
Q Consensus 259 ----------~---------~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~------------- 284 (590)
+ ..++....+..+....... + ....+
T Consensus 603 lLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKi 682 (1157)
T KOG0386|consen 603 LLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKL 682 (1157)
T ss_pred HHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHh
Confidence 0 0000000000000000000 0 00000
Q ss_pred -C---Cc----ccceeEE---EEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhH
Q 007774 285 -K---LP----AQLVQRY---VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDME 353 (590)
Q Consensus 285 -~---~~----~~l~~~~---~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~ 353 (590)
. +. ..+...+ ..+....|+..|..+|-++. ..+++++.||.-...-..+..+|.-.
T Consensus 683 CNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLk--atgHRVLlF~qMTrlmdimEdyL~~~----------- 749 (1157)
T KOG0386|consen 683 CNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLK--ATGHRVLLFSQMTRLMDILEDYLQIR----------- 749 (1157)
T ss_pred cCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHH--hcCcchhhHHHHHHHHHHHHHHHhhh-----------
Confidence 0 00 0000111 11223556766666666554 35789999998887777777776543
Q ss_pred HHhhhcCcceEeccCCCChHHHHHHHHHhhccCc---cEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCC
Q 007774 354 LKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK---ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARL 430 (590)
Q Consensus 354 ~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~---~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~ 430 (590)
++....+.|.....+|...++.|..... ..|.+|-..+.|+|+.-.+.||.||.-|+|....|+--|+.|.
T Consensus 750 ------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahri 823 (1157)
T KOG0386|consen 750 ------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI 823 (1157)
T ss_pred ------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHh
Confidence 7778899999999999999999998654 3577999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCcc
Q 007774 431 GERGDSLLFLQPV 443 (590)
Q Consensus 431 g~~g~~i~~l~~~ 443 (590)
|+...+-++..-.
T Consensus 824 gq~~evRv~rl~t 836 (1157)
T KOG0386|consen 824 GQKKEVRVLRLIT 836 (1157)
T ss_pred hchhheeeeeeeh
Confidence 9988887775543
No 158
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.35 E-value=2.1e-11 Score=141.65 Aligned_cols=355 Identities=19% Similarity=0.241 Sum_probs=211.5
Q ss_pred CCCcHHHHHHHHHHh-----cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 40 EAPTKVQAQAIPVIL-----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il-----~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
..++++|.+.+.++. .+.+.++...+|.|||+..+..+...+.... .....++|++|+ +++.+|.+++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~-----~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIK-----VYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhccc-----CCCCCeEEEecH-HHHHHHHHHHh
Confidence 458899999998855 2667888999999999887766655222211 113569999998 67788888887
Q ss_pred HHHhhcCCcceEEEEcCCc-----hHHHHHHhcCC----CcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcC
Q 007774 115 KLLHRFHWIVPGYVMGGEN-----RSKEKARLRKG----ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG 185 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~-----~~~~~~~l~~~----~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g 185 (590)
++...... +....|... .......+..+ .+++++|++.+...+.....+.-..++++|+||||++.+..
T Consensus 411 k~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~ 488 (866)
T COG0553 411 KFAPDLRL--VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ 488 (866)
T ss_pred hhCccccc--eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh
Confidence 77543221 333444333 12222222222 78999999999874322233344578899999999976642
Q ss_pred chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecc-cchHHHHHHhh--cCCCEEEecCCC--------C-----
Q 007774 186 FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVNHLAKIS--LETPVLIGLDEK--------K----- 249 (590)
Q Consensus 186 f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~-~~~~~~l~~~~--l~~p~~i~~~~~--------~----- 249 (590)
-. ...-+..++ ....+++|+|+ .+.+.++-.+. +..|........ .
T Consensus 489 s~--~~~~l~~~~----------------~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~ 550 (866)
T COG0553 489 SS--EGKALQFLK----------------ALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEE 550 (866)
T ss_pred hH--HHHHHHHHh----------------hcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcc
Confidence 21 111122333 12236777776 33333333221 223333221100 0
Q ss_pred ------------------------------------CCCCcccccccCcc-----------c---cchhhccCCCccccc
Q 007774 250 ------------------------------------LPEDKSHVRFGSLE-----------S---DVKEEVEHPSTTMRS 279 (590)
Q Consensus 250 ------------------------------------~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~ 279 (590)
++.......+.... . ...............
T Consensus 551 ~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~ 630 (866)
T COG0553 551 DIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSD 630 (866)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 00000000000000 0 000000000000000
Q ss_pred -------cc----------cccCCcccceeE-EEE---------------------ecCC-ChHHHHHHHH-HhhhcccC
Q 007774 280 -------TT----------EDFKLPAQLVQR-YVK---------------------VPCG-SRLAVLLSIL-KHLFDTEV 318 (590)
Q Consensus 280 -------~~----------~~~~~~~~l~~~-~~~---------------------~~~~-~k~~~L~~~l-~~~~~~~~ 318 (590)
.. .-...|...... ... +... .|...+..++ .... ..
T Consensus 631 ~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~--~~ 708 (866)
T COG0553 631 ENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLL--EE 708 (866)
T ss_pred cccccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHH--hh
Confidence 00 000001101000 000 0111 6777777777 4443 23
Q ss_pred Cc--eEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhcc--CccEEEecc
Q 007774 319 SQ--KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE--KKALLLSTD 394 (590)
Q Consensus 319 ~~--k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~--~~~vLiaTd 394 (590)
+. +++||+......+-+...+... ++..+.++|.++.++|...++.|.++ ...++++|.
T Consensus 709 ~~~~kvlifsq~t~~l~il~~~l~~~-----------------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 709 GHYHKVLIFSQFTPVLDLLEDYLKAL-----------------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred cccccEEEEeCcHHHHHHHHHHHHhc-----------------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 44 9999999999999888888776 56789999999999999999999986 445677889
Q ss_pred ccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEE
Q 007774 395 VAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (590)
Q Consensus 395 v~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~ 439 (590)
+++.|+|+-..++||+||+.+++....|...|+.|.|+...+-++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999988776664
No 159
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.32 E-value=8.3e-11 Score=127.66 Aligned_cols=120 Identities=22% Similarity=0.375 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHH
Q 007774 301 SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380 (590)
Q Consensus 301 ~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~ 380 (590)
.|+..|.-+|.++. ..+++++||+.-....+.+..+|... |+-.+.|.|..+.++|+..++
T Consensus 1260 GKLQtLAiLLqQLk--~eghRvLIfTQMtkmLDVLeqFLnyH-----------------gylY~RLDg~t~vEqRQaLme 1320 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLK--SEGHRVLIFTQMTKMLDVLEQFLNYH-----------------GYLYVRLDGNTSVEQRQALME 1320 (1958)
T ss_pred chHHHHHHHHHHHH--hcCceEEehhHHHHHHHHHHHHHhhc-----------------ceEEEEecCCccHHHHHHHHH
Confidence 47777777777665 35789999999999888888888766 778899999999999999999
Q ss_pred HhhccC--ccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEE
Q 007774 381 AFKTEK--KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (590)
Q Consensus 381 ~F~~~~--~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~ 439 (590)
+|+... ...+++|-..+.|||+-+.|.||+||..||+..-.|.-.|+.|.|+...+.++
T Consensus 1321 rFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1321 RFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred HhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEE
Confidence 999864 35577999999999999999999999999998888888888888877666654
No 160
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=6.4e-11 Score=119.48 Aligned_cols=364 Identities=17% Similarity=0.172 Sum_probs=218.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccC-cchH--HHHHHHHHHHHHhhcCC-------C---------------CCCCCCe
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAAT-GTGK--TVAYLAPIINHLQSYSP-------R---------------IDRSSGT 94 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~T-GsGK--Tl~~l~pil~~l~~~~~-------~---------------~~~~~~~ 94 (590)
..+|+.|.+.+..+.+.+|++.--.| +.|+ +-.|++-+++++.+... + ..--..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46899999999999999998653322 4555 45688888887754211 1 0001247
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcc------------------------------eEEEEcCCchHHH------H
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIV------------------------------PGYVMGGENRSKE------K 138 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~------------------------------~~~~~gg~~~~~~------~ 138 (590)
++|||||+|+-|..+.+.+-.++.....-. ..++.|..+..-. +
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 899999999999999998888753221100 0011111110000 0
Q ss_pred HH--hc---CCCcEEEECChHHHHHHhccCC----C-CCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCC--
Q 007774 139 AR--LR---KGISILVATPGRLLDHLKHTSS----F-LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIG-- 206 (590)
Q Consensus 139 ~~--l~---~~~~IlV~Tp~rl~~~l~~~~~----~-~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~-- 206 (590)
.. +- ...+|+||+|=-|.-.+.++.. + .++.+.++|+|-||.++..+| +.+..|+.+|........+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 00 00 1468999999888777764221 2 467899999999998887766 5677788888766554322
Q ss_pred -------CCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccc
Q 007774 207 -------EGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRS 279 (590)
Q Consensus 207 -------~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (590)
..+...+.-+|+++||+-.......+....+.|-.-....... .... ....+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~-~~~g---si~~v----------------- 512 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNL-QSGG---SISNV----------------- 512 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccc-cCCC---chhhc-----------------
Confidence 1112234458999999998877777776655543221111110 0000 00000
Q ss_pred cccccCCccccee---EEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHh
Q 007774 280 TTEDFKLPAQLVQ---RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQ 356 (590)
Q Consensus 280 ~~~~~~~~~~l~~---~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 356 (590)
..++++.... .-+.-..+.++.....-+--.+.......++|+.++--.--.+..+++..
T Consensus 513 ---~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e-------------- 575 (698)
T KOG2340|consen 513 ---GIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE-------------- 575 (698)
T ss_pred ---cchhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh--------------
Confidence 0112221111 11112233444444433322222223457899999976666677777765
Q ss_pred hhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccc--cCCCCCCCcEEEEecCCCChhHH---HhhhccccCCC
Q 007774 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAA--RGLDFPKVKCIIQYDSAGEATEY---VHRVGRTARLG 431 (590)
Q Consensus 357 ~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~--rGlDip~v~~VI~~d~p~s~~~y---iqr~GRt~R~g 431 (590)
.+....+|---++.+-.++-+-|-.|...||+-|.-+- |-.+|.+|..||.|.+|.+|..| +-..||+.-.|
T Consensus 576 ---~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 576 ---EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred ---hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccC
Confidence 34444455555666667778889999999999998764 67899999999999999999888 45557766555
Q ss_pred C----CccEEEEeCccch
Q 007774 432 E----RGDSLLFLQPVEM 445 (590)
Q Consensus 432 ~----~g~~i~~l~~~e~ 445 (590)
+ .-.|.++++.-+.
T Consensus 653 n~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 653 NTDLDIFTVRILYTKYDR 670 (698)
T ss_pred CccccceEEEEEeechhh
Confidence 3 1244455555443
No 161
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.30 E-value=1.5e-10 Score=120.24 Aligned_cols=121 Identities=25% Similarity=0.399 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 300 ~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
..|+..|..+|..+- ..++++++|+.-....+.+..+|... ++..+.|.|.....+|..++
T Consensus 1027 SgKL~~LDeLL~kLk--aegHRvL~yfQMTkM~dl~EdYl~yr-----------------~Y~ylRLDGSsk~~dRrd~v 1087 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLK--AEGHRVLMYFQMTKMIDLIEDYLVYR-----------------GYTYLRLDGSSKASDRRDVV 1087 (1185)
T ss_pred ccceeeHHHHHHHhh--cCCceEEehhHHHHHHHHHHHHHHhh-----------------ccceEEecCcchhhHHHHHH
Confidence 567777887777654 35789999999999999888888765 78889999999999999999
Q ss_pred HHhhccCccE-EEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEE
Q 007774 380 GAFKTEKKAL-LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (590)
Q Consensus 380 ~~F~~~~~~v-LiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~ 439 (590)
..|...++-| |++|-..+-|||+...+.||.||..|+|..-.|...|+.|.|+...+.++
T Consensus 1088 rDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1088 RDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred hhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 9999876554 78999999999999999999999999999999999999999988765554
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.30 E-value=1.8e-10 Score=124.07 Aligned_cols=321 Identities=18% Similarity=0.219 Sum_probs=177.9
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 137 (590)
-.+|.||+|||||-+.+-++-+.+. ..+.++|+|+-.+.|+.+..+.++...- ...+ .+...+. .
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~--------~~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv-~Y~d~~~-~--- 115 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK--------NPDKSVLVVSHRRSLTKSLAERFKKAGL--SGFV-NYLDSDD-Y--- 115 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc--------CCCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccce-eeecccc-c---
Confidence 3599999999999877665555442 2457799999999999999998875421 0111 1111100 0
Q ss_pred HHHhc-CCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHH------HHHHhccCCCCCCCCCCC
Q 007774 138 KARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE------ILDILGSRNIGSIGEGNE 210 (590)
Q Consensus 138 ~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~------il~~l~~~~~~~~~~~~~ 210 (590)
.+. ...+-+++....|...-. -.+.++++|||||+...+..-|...+++ ++..+-+
T Consensus 116 --~i~~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~----------- 178 (824)
T PF02399_consen 116 --IIDGRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR----------- 178 (824)
T ss_pred --cccccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH-----------
Confidence 011 124567777777754432 2345789999999998887644433332 2222222
Q ss_pred ccccCceEEEEeecccchHHHHHHhh-cCCCEEEecCCCCCCCCc--ccccccCccccchhhccCCCccccccccc-cCC
Q 007774 211 VSNVKRQNLLLSATLNEKVNHLAKIS-LETPVLIGLDEKKLPEDK--SHVRFGSLESDVKEEVEHPSTTMRSTTED-FKL 286 (590)
Q Consensus 211 ~~~~~~q~il~SAT~~~~~~~l~~~~-l~~p~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 286 (590)
....+|++-||+++..-++.... -..++.+......-..+. ...-......+.....-............ -.-
T Consensus 179 ---~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (824)
T PF02399_consen 179 ---NAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHS 255 (824)
T ss_pred ---hCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCC
Confidence 15788999999998766665543 334444444332211111 01111111111111000000000000000 000
Q ss_pred cccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEec
Q 007774 287 PAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (590)
Q Consensus 287 ~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l 366 (590)
+..............-+..|..-|. .+.++.||++|...++.+.+..... +..|..+
T Consensus 256 ~~~~~~~~~~~~~~tF~~~L~~~L~------~gknIcvfsSt~~~~~~v~~~~~~~-----------------~~~Vl~l 312 (824)
T PF02399_consen 256 PDPTATAAISNDETTFFSELLARLN------AGKNICVFSSTVSFAEIVARFCARF-----------------TKKVLVL 312 (824)
T ss_pred CccccccccccchhhHHHHHHHHHh------CCCcEEEEeChHHHHHHHHHHHHhc-----------------CCeEEEE
Confidence 1111111111111222333333333 3688999999999999999988876 6678888
Q ss_pred cCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCC--CcEEEEecCC----CChhHHHhhhccccCCCCCccEEEEe
Q 007774 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK--VKCIIQYDSA----GEATEYVHRVGRTARLGERGDSLLFL 440 (590)
Q Consensus 367 hg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~--v~~VI~~d~p----~s~~~yiqr~GRt~R~g~~g~~i~~l 440 (590)
+|.-+..+. +. -++.+|++-|++...|+++-. .+-|.-|=-| .+..+..|.+||+-.. .....++++
T Consensus 313 ~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~ 385 (824)
T PF02399_consen 313 NSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYI 385 (824)
T ss_pred cCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEE
Confidence 887655422 22 467899999999999999954 3444444222 2344577999997444 445666665
Q ss_pred Ccc
Q 007774 441 QPV 443 (590)
Q Consensus 441 ~~~ 443 (590)
.+.
T Consensus 386 d~~ 388 (824)
T PF02399_consen 386 DAS 388 (824)
T ss_pred ecc
Confidence 553
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.25 E-value=1.5e-10 Score=123.44 Aligned_cols=141 Identities=18% Similarity=0.280 Sum_probs=112.8
Q ss_pred ecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCC-----CCChhHHHhhhcCcceEeccCCCC
Q 007774 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH-----SQPDMELKQLFLRCKTFRLHGNMK 371 (590)
Q Consensus 297 ~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~v~~lhg~~~ 371 (590)
+....|+..|+.+|+..- ..+.|+|||..+..+.+.+-.+|........ +.........+.|...+.|.|..+
T Consensus 1122 ~~~SgKmiLLleIL~mce--eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~ 1199 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCE--EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTT 1199 (1567)
T ss_pred hhcCcceehHHHHHHHHH--HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCccc
Confidence 344678888888888754 4578999999999988888777765432211 111111222566778999999999
Q ss_pred hHHHHHHHHHhhccC----ccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEE
Q 007774 372 QEDRRTTFGAFKTEK----KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (590)
Q Consensus 372 ~~~R~~~~~~F~~~~----~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~ 439 (590)
..+|....++|.+-. ...||+|-..+-|||+-..+.||.||..|+|+-=.|.+=|+-|.|+..-++++
T Consensus 1200 s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1200 SQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999999999998742 34799999999999999999999999999999999999999999998888875
No 164
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.22 E-value=1.3e-10 Score=115.57 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=60.1
Q ss_pred CCCCCCcHHHHHHH----HHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHH
Q 007774 37 LGFEAPTKVQAQAI----PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i----~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 112 (590)
|+|+ |+|.|.+.+ ..+..|+++++.||||+|||+++++|++..+...... ..+.+++|+++|..+..|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 6787 799999954 4556789999999999999999999999876542211 0234799999999998888777
Q ss_pred HHHH
Q 007774 113 LHKL 116 (590)
Q Consensus 113 ~~~~ 116 (590)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
No 165
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.22 E-value=1.3e-10 Score=115.57 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=60.1
Q ss_pred CCCCCCcHHHHHHH----HHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHH
Q 007774 37 LGFEAPTKVQAQAI----PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i----~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 112 (590)
|+|+ |+|.|.+.+ ..+..|+++++.||||+|||+++++|++..+...... ..+.+++|+++|..+..|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 6787 799999954 4556789999999999999999999999876542211 0234799999999998888777
Q ss_pred HHHH
Q 007774 113 LHKL 116 (590)
Q Consensus 113 ~~~~ 116 (590)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.19 E-value=4.2e-11 Score=102.58 Aligned_cols=138 Identities=22% Similarity=0.208 Sum_probs=80.3
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|+--++...+|+|||--.+.-++..-.+ .+.++|||.|||.++..+.+.++..- +.... ...
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~~-------~~~~t--~~~ 65 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGLP-------VRFHT--NAR 65 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTSS-------EEEES--TTS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcCC-------cccCc--eee
Confidence 45556889999999998777766654433 36779999999999999988886431 11111 111
Q ss_pred HHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCcccc
Q 007774 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (590)
Q Consensus 135 ~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~ 214 (590)
.. ....+.-|-|+|.+.+...+.+ .....+++++|+||||-. |.. .-.....+..+... .
T Consensus 66 ~~---~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~-Dp~-sIA~rg~l~~~~~~-------------g 125 (148)
T PF07652_consen 66 MR---THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFT-DPT-SIAARGYLRELAES-------------G 125 (148)
T ss_dssp S-------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT---SHH-HHHHHHHHHHHHHT-------------T
T ss_pred ec---cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccC-CHH-HHhhheeHHHhhhc-------------c
Confidence 00 1123456889999998877765 333579999999999953 321 11222223333221 1
Q ss_pred CceEEEEeecccchH
Q 007774 215 KRQNLLLSATLNEKV 229 (590)
Q Consensus 215 ~~q~il~SAT~~~~~ 229 (590)
...+|++|||+|-..
T Consensus 126 ~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 126 EAKVIFMTATPPGSE 140 (148)
T ss_dssp S-EEEEEESS-TT--
T ss_pred CeeEEEEeCCCCCCC
Confidence 467899999998543
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.17 E-value=1.4e-10 Score=116.96 Aligned_cols=154 Identities=23% Similarity=0.254 Sum_probs=90.7
Q ss_pred HHHHHHHHHh-------------cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 45 VQAQAIPVIL-------------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 45 ~Q~~~i~~il-------------~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
+|.+++..++ ..+.+++..++|+|||+..+..+.. +...... .....+|||+|. .+..||.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~-l~~~~~~---~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISY-LKNEFPQ---RGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHH-HHHCCTT---SS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhh-hhhcccc---ccccceeEeecc-chhhhhhh
Confidence 5777777663 3357899999999999988776553 3221111 112349999999 88899999
Q ss_pred HHHHHHhhcCCcceEEEEcCCc-hHHHHHHhcCCCcEEEECChHHH-----HHHhccCCCCCCceeEEEEechhhhhhcC
Q 007774 112 ILHKLLHRFHWIVPGYVMGGEN-RSKEKARLRKGISILVATPGRLL-----DHLKHTSSFLHTNLRWIIFDEADRILELG 185 (590)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~gg~~-~~~~~~~l~~~~~IlV~Tp~rl~-----~~l~~~~~~~~~~l~~lVlDEah~ll~~g 185 (590)
++..+..... . ......|.. ............+++|+|++.+. ..... +..-.+++||+||+|.+-+
T Consensus 76 E~~~~~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~-- 148 (299)
T PF00176_consen 76 EIEKWFDPDS-L-RVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKN-- 148 (299)
T ss_dssp HHHHHSGT-T-S--EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTT--
T ss_pred hhcccccccc-c-cccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccc--
Confidence 9999875222 2 333444444 22222223345789999999998 21111 1113589999999999843
Q ss_pred chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeeccc
Q 007774 186 FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (590)
Q Consensus 186 f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~ 226 (590)
........+..+. ....+++|||+-
T Consensus 149 ~~s~~~~~l~~l~----------------~~~~~lLSgTP~ 173 (299)
T PF00176_consen 149 KDSKRYKALRKLR----------------ARYRWLLSGTPI 173 (299)
T ss_dssp TTSHHHHHHHCCC----------------ECEEEEE-SS-S
T ss_pred ccccccccccccc----------------cceEEeeccccc
Confidence 3333333333343 467799999974
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.17 E-value=1.6e-09 Score=123.65 Aligned_cols=352 Identities=18% Similarity=0.146 Sum_probs=180.7
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 136 (590)
+..+|+--||||||++.+..+-..+.. ...+.+++|+-+++|-.|+.+.+..+..... ..+ ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~-~~~----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF-NDP----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhh-hcc----cccCHHH
Confidence 468999999999999876544433322 3467899999999999999999999876332 111 4455666
Q ss_pred HHHHhcCC-CcEEEECChHHHHHHhccCCCCC-CceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCcccc
Q 007774 137 EKARLRKG-ISILVATPGRLLDHLKHTSSFLH-TNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (590)
Q Consensus 137 ~~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~-~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~ 214 (590)
.++.++.+ -.|+|+|.+.+-..+........ .+==++|+|||||-- ++.....+-..++
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~---------------- 402 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK---------------- 402 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc----------------
Confidence 66777755 48999999999877755311111 122268999999843 4455555555565
Q ss_pred CceEEEEeecccchHHHH-HHhhcCCCEEEecCCCCCCCCcc-cccccCc------cccchhhccCCCccccccc-c-cc
Q 007774 215 KRQNLLLSATLNEKVNHL-AKISLETPVLIGLDEKKLPEDKS-HVRFGSL------ESDVKEEVEHPSTTMRSTT-E-DF 284 (590)
Q Consensus 215 ~~q~il~SAT~~~~~~~l-~~~~l~~p~~i~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~-~-~~ 284 (590)
+...++||+||-..-..- ....+++....-.....+..... .+.|... ................... . ..
T Consensus 403 ~a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (962)
T COG0610 403 KAIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILE 482 (962)
T ss_pred cceEEEeeCCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHH
Confidence 578899999984322221 12222222222211111111000 1111110 0000000000000000000 0 00
Q ss_pred CCcccceeEEEEecCCChHHHHHHHHHhhhc--ccCCceEEEEecchhhHHHHHHhhhhccCCCC--CCChhHHHhhhcC
Q 007774 285 KLPAQLVQRYVKVPCGSRLAVLLSILKHLFD--TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH--SQPDMELKQLFLR 360 (590)
Q Consensus 285 ~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~--~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 360 (590)
..-......-.......++.....-+..++. ...+.++++.++++..+..++........... .............
T Consensus 483 ~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 562 (962)
T COG0610 483 KIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTE 562 (962)
T ss_pred HHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhh
Confidence 0000000000111112222222222222221 23457888888888855555554433211111 0001111111111
Q ss_pred cc----eEeccCCCChHHHHHHHHHh--hccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCC---
Q 007774 361 CK----TFRLHGNMKQEDRRTTFGAF--KTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG--- 431 (590)
Q Consensus 361 ~~----v~~lhg~~~~~~R~~~~~~F--~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g--- 431 (590)
+. ....|... ...+.....+| .....++||.+|++-.|.|-|.++.+ -+|-|--.-..+|.+-||.|.-
T Consensus 563 ~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~ 640 (962)
T COG0610 563 FETDFDKKQSHAKL-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGK 640 (962)
T ss_pred cccchhhhhhhHHH-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCCCCC
Confidence 11 11112222 22333444443 44578999999999999999998754 5677888889999999999963
Q ss_pred -CCccEEEEeC
Q 007774 432 -ERGDSLLFLQ 441 (590)
Q Consensus 432 -~~g~~i~~l~ 441 (590)
..|..+-|..
T Consensus 641 K~~G~IVDf~g 651 (962)
T COG0610 641 KKFGLIVDFRG 651 (962)
T ss_pred CCCcEEEECcc
Confidence 2355555544
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.90 E-value=6e-08 Score=93.90 Aligned_cols=133 Identities=22% Similarity=0.301 Sum_probs=97.0
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 35 ~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
..+|+. |+++|.-++=.+..|+ |++..||=|||++..+|++-..+. |..+-|++.+..||..=++++.
T Consensus 72 r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 72 RTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp HHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHHHHHHH
T ss_pred HHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhccHHHHH
Confidence 356776 9999999987776765 999999999999998888766543 6779999999999999999999
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCC----C-CCCceeEEEEechhhhh
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSS----F-LHTNLRWIIFDEADRIL 182 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~----~-~~~~l~~lVlDEah~ll 182 (590)
.+...+ .+.++++.++......++.. .++|+.+|.+.+ +|.|...-. . ....++++|+||||.++
T Consensus 140 ~~y~~L-Glsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 140 PFYEFL-GLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHT-T--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHh-hhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999855 47888888877654433332 357999999887 455544211 1 24688999999999875
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.89 E-value=5.2e-08 Score=106.13 Aligned_cols=131 Identities=24% Similarity=0.252 Sum_probs=91.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 37 LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
+|+. |..+|.-. .+.-...-+....||=||||+..+|+.-.-+ .|..+.+++..--||.--.+++..+
T Consensus 77 lg~~-~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL---------~gkgVhvVTvNdYLA~RDae~m~~l 144 (822)
T COG0653 77 LGMR-HFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNAL---------AGKGVHVVTVNDYLARRDAEWMGPL 144 (822)
T ss_pred cCCC-hhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhc---------CCCCcEEeeehHHhhhhCHHHHHHH
Confidence 4544 55566444 4444445789999999999999999865543 3566899999999999999999998
Q ss_pred HhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccCC-----CCCCceeEEEEechhhhh
Q 007774 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSS-----FLHTNLRWIIFDEADRIL 182 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~-----~~~~~l~~lVlDEah~ll 182 (590)
... -...+++...+......++ .-.++|..+|-..| +|.+..... .....+.+.|+||+|.++
T Consensus 145 ~~~-LGlsvG~~~~~m~~~ek~~--aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 145 YEF-LGLSVGVILAGMSPEEKRA--AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHH-cCCceeeccCCCChHHHHH--HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 884 4577777777664443333 34579999998876 444443211 133468899999999754
No 171
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.59 E-value=4e-07 Score=97.75 Aligned_cols=347 Identities=18% Similarity=0.203 Sum_probs=182.4
Q ss_pred HHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH-HHHhhcCCcceEEE
Q 007774 50 IPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH-KLLHRFHWIVPGYV 128 (590)
Q Consensus 50 i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~-~~~~~~~~~~~~~~ 128 (590)
+..+..+.-+++.+.||.|||.-+.--+++.+..... .....+.+--|+|-.+.-+.+.+- +-.......
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~----g~~~na~v~qprrisaisiaerva~er~e~~g~t----- 457 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN----GASFNAVVSQPRRISAISLAERVANERGEEVGET----- 457 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc----cccccceeccccccchHHHHHHHHHhhHHhhccc-----
Confidence 3444456678999999999999999999988776432 223447777899988887776543 322211111
Q ss_pred EcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCC
Q 007774 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEG 208 (590)
Q Consensus 129 ~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~ 208 (590)
+ |.+...+...-+.---|+.+|-|-++..+.+. +..+..+|+||.|.-.- -...+..+++-+...
T Consensus 458 v-gy~vRf~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv--~~dfll~~lr~m~~t-------- 522 (1282)
T KOG0921|consen 458 C-GYNVRFDSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDV--DTDFVLIVLREMIST-------- 522 (1282)
T ss_pred c-cccccccccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhcc--chHHHHHHHHhhhcc--------
Confidence 1 22222222222222359999999999887652 24667899999995221 112222222222110
Q ss_pred CCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCC-----------------CCcccccccCccccchhhcc
Q 007774 209 NEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP-----------------EDKSHVRFGSLESDVKEEVE 271 (590)
Q Consensus 209 ~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 271 (590)
-.....+++|||+.... +...+-.-|.. .+.....+ .......-......+.....
T Consensus 523 ----y~dl~v~lmsatIdTd~--f~~~f~~~p~~-~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~d 595 (1282)
T KOG0921|consen 523 ----YRDLRVVLMSATIDTDL--FTNFFSSIPDV-TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVD 595 (1282)
T ss_pred ----chhhhhhhhhcccchhh--hhhhhccccce-eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhh
Confidence 01455566666664321 11111111111 11100000 00000000000000000000
Q ss_pred CCCccccccccccCCcccceeEEEEecCCChHHHHHH-HHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCC
Q 007774 272 HPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLS-ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQP 350 (590)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~-~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~ 350 (590)
.-.. ......+-..-..+...............|.+ ++..+....-.+-++||.+-....-++...+.....-.
T Consensus 596 dK~~-n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg---- 670 (1282)
T KOG0921|consen 596 DKGR-NMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFG---- 670 (1282)
T ss_pred hccc-ccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhc----
Confidence 0000 00000000000111111111112222222333 33333333456789999999888777777665432111
Q ss_pred hhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC----------------
Q 007774 351 DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA---------------- 414 (590)
Q Consensus 351 ~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p---------------- 414 (590)
.....+++.+|+.....+..++++....|..+++++|.++..-+.+.++..||..+.-
T Consensus 671 ------~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~At 744 (1282)
T KOG0921|consen 671 ------QANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYAT 744 (1282)
T ss_pred ------cchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeee
Confidence 0124568889999999999999999999999999999999999888887777754422
Q ss_pred --CChhHHHhhhccccCCCCCccEEEE
Q 007774 415 --GEATEYVHRVGRTARLGERGDSLLF 439 (590)
Q Consensus 415 --~s~~~yiqr~GRt~R~g~~g~~i~~ 439 (590)
.+....+||.||+||. +.|.|...
T Consensus 745 vw~sktn~eqr~gr~grv-R~G~~f~l 770 (1282)
T KOG0921|consen 745 VWASKTNLEQRKGRAGRV-RPGFCFHL 770 (1282)
T ss_pred ecccccchHhhcccCcee-cccccccc
Confidence 2566678999999987 44555443
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.56 E-value=5.2e-07 Score=100.68 Aligned_cols=68 Identities=31% Similarity=0.426 Sum_probs=54.6
Q ss_pred CccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCC--CCc-----c--EE-EEeCccchHHHHHHHH
Q 007774 386 KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG--ERG-----D--SL-LFLQPVEMDYLQDLEK 453 (590)
Q Consensus 386 ~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g--~~g-----~--~i-~~l~~~e~~~~~~l~~ 453 (590)
..+.+|+-+.+.+|+|-|+|=.+.-+....|...-.|-+||.-|.. +.| . .+ ++...++.+|+..|..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHH
Confidence 5789999999999999999999999998999999999999998852 122 1 22 2445678888888775
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.45 E-value=4e-06 Score=93.61 Aligned_cols=68 Identities=18% Similarity=0.029 Sum_probs=53.4
Q ss_pred CCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEee
Q 007774 144 GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSA 223 (590)
Q Consensus 144 ~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SA 223 (590)
...|+++||..|..-+.. +.+.+..+..||+||||++.+..-+..+-.++..-.+ ..-+.+|||
T Consensus 7 ~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~---------------~gfIkafSd 70 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNK---------------TGFIKAFSD 70 (814)
T ss_pred cCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCC---------------CcceEEecC
Confidence 346999999998665544 5678889999999999999887667777777766543 567899999
Q ss_pred cccc
Q 007774 224 TLNE 227 (590)
Q Consensus 224 T~~~ 227 (590)
.+..
T Consensus 71 sP~~ 74 (814)
T TIGR00596 71 NPEA 74 (814)
T ss_pred CCcc
Confidence 9864
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.37 E-value=2.7e-05 Score=84.11 Aligned_cols=68 Identities=28% Similarity=0.442 Sum_probs=55.7
Q ss_pred CccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCC--CCcc-----------EEEEeCccchHHHHHHH
Q 007774 386 KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG--ERGD-----------SLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 386 ~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g--~~g~-----------~i~~l~~~e~~~~~~l~ 452 (590)
..+.+++-..+-+|+|=|+|=.+.-+....|..+=.|-+||.-|.. +.|. -.+++..+|.+|+..|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999852 3332 22345568899998887
Q ss_pred H
Q 007774 453 K 453 (590)
Q Consensus 453 ~ 453 (590)
+
T Consensus 563 k 563 (985)
T COG3587 563 K 563 (985)
T ss_pred H
Confidence 5
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.29 E-value=3.7e-06 Score=81.27 Aligned_cols=73 Identities=29% Similarity=0.341 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHhcCCc-EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 42 PTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
+.+-|.+|+..++.... .+|+||+|||||.+... ++..+...........+..+|+++||...+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999999988 99999999999954443 333331100000114577899999999999999988877
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.26 E-value=4.8e-07 Score=99.01 Aligned_cols=130 Identities=21% Similarity=0.211 Sum_probs=92.1
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~ 135 (590)
..++++-+|||||||++|.+.++..+.. ..+.++++++|-.+|...-.+....... .+.+.+.-+.|.....
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~-~~g~k~ie~tgd~~pd 1014 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDE-LPGIKVIELTGDVTPD 1014 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhcc-cCCceeEeccCccCCC
Confidence 4678999999999999999999887765 3467899999999998877776665544 2244444455444333
Q ss_pred HHHHHhcCCCcEEEECChHHHHHHhccCCC-CCCceeEEEEechhhhhhcCchHHHHHHHHHh
Q 007774 136 KEKARLRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (590)
Q Consensus 136 ~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l 197 (590)
-. . ...++|+|+||.+...+..+.... -+.++..+|+||.|. +..+++..++.|....
T Consensus 1015 -~~-~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl-lg~~rgPVle~ivsr~ 1073 (1230)
T KOG0952|consen 1015 -VK-A-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL-LGEDRGPVLEVIVSRM 1073 (1230)
T ss_pred -hh-h-eecCceEEcccccccCccccccchhhhccccceeeccccc-ccCCCcceEEEEeecc
Confidence 11 1 135789999999998887754332 457889999999995 5555555555554443
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.23 E-value=6.2e-06 Score=76.74 Aligned_cols=132 Identities=23% Similarity=0.286 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH-------HH
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY-------EI 112 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~-------~~ 112 (590)
...|.-|..++..++...-+++.+|.|||||+.++..+++.+.. +.-.+++|.-|+.+....+- +-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45789999999999988889999999999999999999998875 33456888888875311111 10
Q ss_pred HHHHH----hhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchH
Q 007774 113 LHKLL----HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188 (590)
Q Consensus 113 ~~~~~----~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~ 188 (590)
+..++ ..+.... +.... +.+.....|-+..+..+. ...+++ .+||+|||+.+. ..
T Consensus 76 ~~p~~~p~~d~l~~~~-----~~~~~----~~~~~~~~Ie~~~~~~iR-------Grt~~~-~~iIvDEaQN~t----~~ 134 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-----GKEKL----EELIQNGKIEIEPLAFIR-------GRTFDN-AFIIVDEAQNLT----PE 134 (205)
T ss_dssp --TTTHHHHHHHTTTS------TTCH----HHHHHTTSEEEEEGGGGT-------T--B-S-EEEEE-SGGG------HH
T ss_pred HHHHHHHHHHHHHHHh-----ChHhH----HHHhhcCeEEEEehhhhc-------Cccccc-eEEEEecccCCC----HH
Confidence 10000 0000000 11111 112223346666654441 222222 689999999863 46
Q ss_pred HHHHHHHHhcc
Q 007774 189 EIEEILDILGS 199 (590)
Q Consensus 189 ~l~~il~~l~~ 199 (590)
++..++.++..
T Consensus 135 ~~k~ilTR~g~ 145 (205)
T PF02562_consen 135 ELKMILTRIGE 145 (205)
T ss_dssp HHHHHHTTB-T
T ss_pred HHHHHHcccCC
Confidence 78888877764
No 178
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.18 E-value=1.1e-05 Score=75.62 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=45.7
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~--dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 112 (590)
++++-|.+++..++... -.++.++.|+|||.+ +..+.+.+.. .+..+++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 37889999999997544 478899999999965 3445555544 357799999999887776665
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.15 E-value=8.5e-06 Score=74.30 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=73.5
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc--c
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD--V 395 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd--v 395 (590)
.++.++|||+|-+..+.++..+...... .+..++.- +..++..+++.|++++..||+|+. .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-------------~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~ 70 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-------------KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGS 70 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E--------------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-------------ccceeeec----CcchHHHHHHHHHhccCeEEEEEeccc
Confidence 4689999999999999999988764211 12333332 356789999999999999999999 9
Q ss_pred cccCCCCCC--CcEEEEecCCCC----h--------------------------hHHHhhhccccCCCCCccEEEEeCc
Q 007774 396 AARGLDFPK--VKCIIQYDSAGE----A--------------------------TEYVHRVGRTARLGERGDSLLFLQP 442 (590)
Q Consensus 396 ~~rGlDip~--v~~VI~~d~p~s----~--------------------------~~yiqr~GRt~R~g~~g~~i~~l~~ 442 (590)
+++|+|+|+ ++.||..++|.. + ....|.+||.-|....-.+++++.+
T Consensus 71 ~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 71 FSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred EEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 999999996 888999888841 1 1115889999998775555555554
No 180
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.12 E-value=3e-05 Score=82.33 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=96.6
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCCh-hHHHhhhcCcceEeccCCCChHHHHHHHHHhhccC--c-cEEEec
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPD-MELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK--K-ALLLST 393 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~--~-~vLiaT 393 (590)
.+.++|||..+.-..+.+.+++.....++..... -.-.........+.+.|-.+..+|.+.+++|.... . -+|++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 3578999999988888888888776554432210 00001222445678999999999999999998742 2 478899
Q ss_pred cccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeC
Q 007774 394 DVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQ 441 (590)
Q Consensus 394 dv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~ 441 (590)
....-|||+-..+-+|.||+-|++--=.|.+-|+-|.|+...|+++-.
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 999999999888899999999999999999999999999998888643
No 181
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.95 E-value=4.2e-05 Score=78.79 Aligned_cols=95 Identities=26% Similarity=0.254 Sum_probs=62.3
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 137 (590)
-++|.+.+|||||+..+-.+.+.... ..+..++++++...|...+...+..... .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~-------~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------~------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNS-------EEGKKVLYLCGNHPLRNKLREQLAKKYN-----------P------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhcc-------ccCCceEEEEecchHHHHHHHHHhhhcc-----------c-------
Confidence 47999999999998776655444111 3467799999999999888887765420 0
Q ss_pred HHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh
Q 007774 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 138 ~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
......+..|..+.+.+. .........++||+||||+|.+
T Consensus 58 -----~~~~~~~~~~~~~i~~~~-~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYS-ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -----chhhhhhhhhHHHHhhcc-cccccCCcCCEEEEehhHhhhh
Confidence 001123344444444333 1122346889999999999988
No 182
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.93 E-value=1.5e-05 Score=87.11 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=81.6
Q ss_pred ceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccC-cc-EEEeccccc
Q 007774 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK-KA-LLLSTDVAA 397 (590)
Q Consensus 320 ~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~-~~-vLiaTdv~~ 397 (590)
.+++||+.-.....-+...+.. .+.....+.|.|+...|.+.+..|..+. .. .+++.-...
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~-----------------~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~ 602 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFF-----------------KGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGK 602 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhh-----------------cccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhh
Confidence 3788887766554444333332 2667778999999999999999999653 33 456789999
Q ss_pred cCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEE
Q 007774 398 RGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLL 438 (590)
Q Consensus 398 rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~ 438 (590)
-|+++-...+|+..|+-+++..--|.+-|+.|.|+...+.+
T Consensus 603 ~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 603 VGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999999999999999999998776655
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.93 E-value=7.2e-05 Score=72.88 Aligned_cols=162 Identities=17% Similarity=0.119 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHhc----------CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 41 APTKVQAQAIPVILS----------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~----------g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.++..|.+++-.+.+ +.-.++-..||.||-....-.|++...+ ...++|+++.+-.|-....
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------GRKRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------CCCceEEEECChhhhhHHH
Confidence 378889988866542 3468999999999998877777877664 2346999999999999988
Q ss_pred HHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc----CCC-----CC--CceeEEEEechh
Q 007774 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT----SSF-----LH--TNLRWIIFDEAD 179 (590)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~----~~~-----~~--~~l~~lVlDEah 179 (590)
..+..+.... +.+..+.. .... ....-.-.|+.+|+..|...-... ..+ ++ +.=.+|||||||
T Consensus 109 RDl~DIG~~~--i~v~~l~~-~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 109 RDLRDIGADN--IPVHPLNK-FKYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHHHhCCCc--ccceechh-hccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 8888876531 11111111 0000 001123458999998876653211 000 00 112379999999
Q ss_pred hhhhcCc--------hHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHH
Q 007774 180 RILELGF--------GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL 232 (590)
Q Consensus 180 ~ll~~gf--------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l 232 (590)
.+-+..- ...+..+-+.+| ..+++.+|||-..+.+++
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP----------------~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLP----------------NARVVYASATGASEPRNM 227 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCC----------------CCcEEEecccccCCCcee
Confidence 9877633 134555666676 567999999976655544
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.92 E-value=0.00029 Score=67.52 Aligned_cols=60 Identities=22% Similarity=0.182 Sum_probs=45.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
++...+..|...+..+..+..+++.+++|||||+..+...++.+.. +.-.+++|.=|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCC
Confidence 5556788999999988888889999999999999888888776643 12344666666643
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.90 E-value=0.0001 Score=69.31 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=69.6
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhc---CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS---GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~---g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
.+|+...-+.+++--+. .++- .++.|.+....+.+ |+|.+.+.-+|.|||- .++|++..+.. +...
T Consensus 3 ~~w~p~~~P~wLl~E~e--~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTs-VI~Pmla~~LA-------dg~~ 71 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE--SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTS-VIVPMLALALA-------DGSR 71 (229)
T ss_pred CCCCchhChHHHHHHHH--cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccc-hHHHHHHHHHc-------CCCc
Confidence 46777777778887773 3676 99999999988875 6799999999999995 56777777665 2335
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
-+.+++|. .|..|.++.+..-+..
T Consensus 72 LvrviVpk-~Ll~q~~~~L~~~lg~ 95 (229)
T PF12340_consen 72 LVRVIVPK-ALLEQMRQMLRSRLGG 95 (229)
T ss_pred EEEEEcCH-HHHHHHHHHHHHHHHH
Confidence 57777885 7999999998876653
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.89 E-value=0.00018 Score=78.55 Aligned_cols=148 Identities=22% Similarity=0.240 Sum_probs=86.0
Q ss_pred HHHHHHHHhCCCC-CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 28 TLCDQLRERLGFE-APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 28 ~l~~~l~~~~g~~-~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
.+...|..-++.. ...++|+.|+-..+.++-++|.+++|+|||.+..- ++..+.... ......+++++||.--|
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~----~~~~~~i~l~APTgkAA 212 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLA----DGERCRIRLAAPTGKAA 212 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhc----CCCCcEEEEECCcHHHH
Confidence 3444443333433 23689999999999999999999999999976433 222222211 01245789999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCC-----CCCceeEEEEechhhh
Q 007774 107 LQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF-----LHTNLRWIIFDEADRI 181 (590)
Q Consensus 107 ~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~-----~~~~l~~lVlDEah~l 181 (590)
..+.+.+......... . ..... ....-..|-.+|+........+ ..-.+++||+|||-.
T Consensus 213 ~rL~e~~~~~~~~~~~----------~-~~~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM- 276 (615)
T PRK10875 213 ARLTESLGKALRQLPL----------T-DEQKK----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM- 276 (615)
T ss_pred HHHHHHHHhhhhcccc----------c-hhhhh----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc-
Confidence 8888877654332210 0 00000 1111233444444332111111 122468999999985
Q ss_pred hhcCchHHHHHHHHHhcc
Q 007774 182 LELGFGKEIEEILDILGS 199 (590)
Q Consensus 182 l~~gf~~~l~~il~~l~~ 199 (590)
.| ...+..++..++.
T Consensus 277 vd---~~lm~~ll~al~~ 291 (615)
T PRK10875 277 VD---LPMMARLIDALPP 291 (615)
T ss_pred cc---HHHHHHHHHhccc
Confidence 33 4667778888875
No 187
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.81 E-value=5.2e-05 Score=79.23 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
.+.+-|..|+......++ .++.+|+|+|||.+....+.+.+++ +.++|+.+||.+-+.-+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 478899999999888765 5999999999999887777776644 5779999999999888888543
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=97.81 E-value=0.0001 Score=57.22 Aligned_cols=60 Identities=35% Similarity=0.445 Sum_probs=41.9
Q ss_pred HHHHHhcCCc-EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 49 AIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 49 ~i~~il~g~d-vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
+|...+.+.. ++|.+|+|||||...+-.+.+.+.... .. +.++++++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~----~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA----DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc----CC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443334444 566999999999776665655553211 12 677999999999999988877
No 189
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.80 E-value=0.00015 Score=78.97 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=53.9
Q ss_pred hCCCCCCcHHHHHHHHHHh----cCCcEEEEccCcchHHHHHHHHHHHHHhhcC---CC----CCC--------------
Q 007774 36 RLGFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYS---PR----IDR-------------- 90 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~---~~----~~~-------------- 90 (590)
+|.|. |++.|...+..++ ...++++.+|||+|||++.+--.+...+... ++ ..+
T Consensus 17 ~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 57776 9999998887665 4578999999999999987665554433221 00 000
Q ss_pred ------------CCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 91 ------------SSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 91 ------------~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
-..+++.+-+-|..-..|+..++.+.
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 11356777777877777777776654
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.73 E-value=0.00039 Score=78.06 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=51.7
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 32 ~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
.+.+..++. +++-|++|+..+..++-+++.+++|+|||.+. -.+++.+... .....+++++||---|..+.+
T Consensus 315 ~~~~~~~~~-l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 315 EVEKKLRKG-LSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL------GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred HHHHhcCCC-CCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc------CCCceEEEEeCchHHHHHHHH
Confidence 343445665 99999999999998889999999999999643 3344444321 011568889999887765544
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.73 E-value=0.00045 Score=75.34 Aligned_cols=134 Identities=22% Similarity=0.236 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Q 007774 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122 (590)
Q Consensus 43 t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 122 (590)
.++|+.|+..++.++-++|.+++|||||.+..- ++..+....+. ..+.++++.+||.--|..+.+.+......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 489999999999999999999999999975433 33333221110 11256999999998888888776554321110
Q ss_pred cceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCC-----CCCceeEEEEechhhhhhcCchHHHHHHHHHh
Q 007774 123 IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF-----LHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (590)
Q Consensus 123 ~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~-----~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l 197 (590)
. .... ....+-..|-.+++........+ ....+++||+|||-. ++ ...+..++..+
T Consensus 223 ----------~-~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM-vd---~~l~~~ll~al 283 (586)
T TIGR01447 223 ----------A-EALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM-VD---LPLMAKLLKAL 283 (586)
T ss_pred ----------c-hhhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc-CC---HHHHHHHHHhc
Confidence 0 0000 11112244555554432211111 123578999999984 33 35677788888
Q ss_pred cc
Q 007774 198 GS 199 (590)
Q Consensus 198 ~~ 199 (590)
+.
T Consensus 284 ~~ 285 (586)
T TIGR01447 284 PP 285 (586)
T ss_pred CC
Confidence 75
No 192
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.39 E-value=0.00052 Score=69.52 Aligned_cols=125 Identities=22% Similarity=0.194 Sum_probs=78.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 121 (590)
+|+-|.++|.. ...+++|.|..|||||.+.+.-++..+.... ....++|++++|+..|..+.+.+...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999988 6678999999999999988887777776532 2346699999999999999999988765321
Q ss_pred CcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhc-cCCCCCCceeEEEEechhh
Q 007774 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH-TSSFLHTNLRWIIFDEADR 180 (590)
Q Consensus 122 ~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~~~~~l~~lVlDEah~ 180 (590)
... ...............+-|+|-..+...+-. .....--.-++-++|+.+.
T Consensus 74 ~~~-------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~~ 126 (315)
T PF00580_consen 74 QES-------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEEQ 126 (315)
T ss_dssp HCC-------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHHH
T ss_pred ccc-------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchhc
Confidence 100 000011122222346888998777553322 1111101223577787773
No 193
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.00035 Score=72.87 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=63.2
Q ss_pred EEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH---
Q 007774 61 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE--- 137 (590)
Q Consensus 61 v~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~--- 137 (590)
..+.||||||++....|++...+ .-..-|+.|..-.........+..-...--........+|+...-.
T Consensus 2 f~matgsgkt~~ma~lil~~y~k--------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK--------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh--------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 46789999999988888887654 2233677776655444443333221110000111122333322111
Q ss_pred -HHHhcCCCcEEEECChHHHHHHhccCCC-----CCCceeE-EEEechhhhhh
Q 007774 138 -KARLRKGISILVATPGRLLDHLKHTSSF-----LHTNLRW-IIFDEADRILE 183 (590)
Q Consensus 138 -~~~l~~~~~IlV~Tp~rl~~~l~~~~~~-----~~~~l~~-lVlDEah~ll~ 183 (590)
...-..++.|..+|.+.|...+...+.- ++.+..+ .+-|||||+-.
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 1113356789999999997766554321 2334443 56699999755
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.12 E-value=0.0041 Score=71.36 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=48.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCc-EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 37 LGFEAPTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.|+. +++-|.+++..++.+++ ++|.+..|+|||.+ +-.+.+.+.. .|..++.++||--.|..+.
T Consensus 343 ~g~~-Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 343 RGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred cCCC-CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHHh
Confidence 3664 99999999999998665 69999999999975 4445544432 4677999999976655543
No 195
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.11 E-value=0.0065 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=14.4
Q ss_pred CCcEEEEccCcchHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pi 77 (590)
++-++|.|++|+|||...-..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHH
Confidence 4568999999999997654433
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.06 E-value=0.0085 Score=67.73 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=46.8
Q ss_pred CCCCCcHHHHHHHHHHhcC-CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 38 GFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
++. +++-|..|+..++.+ +-++|.+++|+|||... -.+.+.+.. .|..+++++||--.|..+.
T Consensus 350 ~~~-Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 350 HYR-LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred cCC-CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--------CCCeEEEEeCcHHHHHHHH
Confidence 454 899999999998874 56799999999999643 334444432 3677999999977665554
No 197
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.00 E-value=0.0032 Score=65.13 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHH------hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHH
Q 007774 42 PTKVQAQAIPVI------LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (590)
Q Consensus 42 ~t~~Q~~~i~~i------l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 109 (590)
+++=|++++..+ ..+..+++.++-|+|||..+ -.+..... ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLR-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhc-------cccceEEEecchHHHHHhc
Confidence 567788888887 57889999999999999643 33222222 2457799999998776666
No 198
>PRK04296 thymidine kinase; Provisional
Probab=96.92 E-value=0.0018 Score=60.37 Aligned_cols=99 Identities=19% Similarity=0.293 Sum_probs=53.6
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc---HHHHHHHHHHHHHHHhhcCCcceEEEEcCCc
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT---RELCLQVYEILHKLLHRFHWIVPGYVMGGEN 133 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt---reLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~ 133 (590)
.=.++.+|+|+|||...+-.+.... . .+.+++++-|. +....++ ...++ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~-~--------~g~~v~i~k~~~d~~~~~~~i-------~~~lg----------~~ 56 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE-E--------RGMKVLVFKPAIDDRYGEGKV-------VSRIG----------LS 56 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-H--------cCCeEEEEeccccccccCCcE-------ecCCC----------Cc
Confidence 3468999999999976555444332 2 35668888773 3221111 11011 00
Q ss_pred hHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 134 RSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 134 ~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
.. .+.+..+..+++.+.. .-.+.++||+||||.+. .+++..++..+..
T Consensus 57 ~~----------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~ 104 (190)
T PRK04296 57 RE----------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDD 104 (190)
T ss_pred cc----------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHH
Confidence 00 0123444555555543 12467899999998631 3446667777553
No 199
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.88 E-value=0.0032 Score=69.71 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+.+.|..|+..++.. ..++|.||+|+|||.+..-.+.+.+. .|.++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~---------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK---------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH---------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999998876 57899999999999766554444442 245799999999999999888765
No 200
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.88 E-value=0.0023 Score=61.49 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=61.0
Q ss_pred CCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcC-CchHHHHHHhcC-CCcEEEECChHHHHHHhccCCCCCC
Q 007774 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGG-ENRSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 91 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
...+.+|||+.+-.-|..+...++.+-.. ...++-+..- .....+...+.+ ..+|.||||||+..++.. ..+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcc
Confidence 45688999999977777777777665210 0111112222 245566667765 589999999999999965 678889
Q ss_pred ceeEEEEechhh
Q 007774 169 NLRWIIFDEADR 180 (590)
Q Consensus 169 ~l~~lVlDEah~ 180 (590)
.+.+||||--|+
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998763
No 201
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.87 E-value=0.0065 Score=53.42 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHhhccC-ccEEEeccccccCCCCCC--CcEEEEecCCC
Q 007774 370 MKQEDRRTTFGAFKTEK-KALLLSTDVAARGLDFPK--VKCIIQYDSAG 415 (590)
Q Consensus 370 ~~~~~R~~~~~~F~~~~-~~vLiaTdv~~rGlDip~--v~~VI~~d~p~ 415 (590)
....+...++++|++.. ..||++|.-.++|+|+|+ ++.||..+.|.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 44556789999999765 389999988999999996 67888888774
No 202
>PRK08181 transposase; Validated
Probab=96.72 E-value=0.016 Score=56.82 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=34.5
Q ss_pred cHHHHHHH----HHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 43 TKVQAQAI----PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 43 t~~Q~~~i----~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
...|..++ .++-.++++++.||+|+|||........+... .|..++++ +..+|..++.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~---------~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE---------NGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH---------cCCceeee-eHHHHHHHHH
Confidence 45555554 23447789999999999999655443333322 23445444 4556655553
No 203
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.69 E-value=0.027 Score=65.23 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhc-CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc
Q 007774 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (590)
Q Consensus 24 ~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~-g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt 102 (590)
+.++..+...... ++. +++-|..++..+.. ++-++|.++.|+|||.+. -++.+.+.. .|..++.++||
T Consensus 366 ~v~~~~l~a~~~~-~~~-Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--------~G~~V~g~ApT 434 (1102)
T PRK13826 366 GVREAVLAATFAR-HAR-LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--------AGYRVVGGALA 434 (1102)
T ss_pred CCCHHHHHHHHhc-CCC-CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--------cCCeEEEEcCc
Confidence 3455555554332 554 99999999998864 456899999999999543 344444432 46779999999
Q ss_pred HHHHHHHH
Q 007774 103 RELCLQVY 110 (590)
Q Consensus 103 reLa~Q~~ 110 (590)
---|..+.
T Consensus 435 gkAA~~L~ 442 (1102)
T PRK13826 435 GKAAEGLE 442 (1102)
T ss_pred HHHHHHHH
Confidence 77665554
No 204
>PHA02533 17 large terminase protein; Provisional
Probab=96.68 E-value=0.021 Score=61.79 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=83.3
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 121 (590)
|.|+|...+..+..++-.++..+=..|||.+....++..... ..+..+++++|++.-|..+++.++.+....+
T Consensus 60 L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 60 MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 899999999887666767888888999999877655544332 2356899999999999999998887766443
Q ss_pred Ccc-eEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhc
Q 007774 122 WIV-PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198 (590)
Q Consensus 122 ~~~-~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~ 198 (590)
... ....... ...-.+..|..|.+.|-+ .....=.+..++|+||+|.+-+ +.+....+...+.
T Consensus 133 ~l~~~~i~~~~----~~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~la 196 (534)
T PHA02533 133 DFLQPGIVEWN----KGSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVIS 196 (534)
T ss_pred HHhhcceeecC----ccEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHH
Confidence 211 1111000 000111344445443321 0111112556899999997644 3455555655554
No 205
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.66 E-value=0.0043 Score=65.74 Aligned_cols=73 Identities=23% Similarity=0.242 Sum_probs=61.7
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
..++.++..-|..|+.++|...=.|+++|+|+|||.+-.-.+++.... .+..+|+++|+.--+.|+++-+.+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHHHh
Confidence 357788999999999999999999999999999999877766665543 456699999999999999988776
Q ss_pred H
Q 007774 116 L 116 (590)
Q Consensus 116 ~ 116 (590)
.
T Consensus 477 t 477 (935)
T KOG1802|consen 477 T 477 (935)
T ss_pred c
Confidence 4
No 206
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.66 E-value=0.0087 Score=52.70 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhccCc---cEEEeccc--cccCCCCCC--CcEEEEecCCC
Q 007774 373 EDRRTTFGAFKTEKK---ALLLSTDV--AARGLDFPK--VKCIIQYDSAG 415 (590)
Q Consensus 373 ~~R~~~~~~F~~~~~---~vLiaTdv--~~rGlDip~--v~~VI~~d~p~ 415 (590)
.+...++++|++... .||+++.- .++|||+|+ ++.||..++|.
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 355789999997644 79999887 999999997 67899888774
No 207
>PRK06526 transposase; Provisional
Probab=96.61 E-value=0.0086 Score=58.38 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=22.0
Q ss_pred HHHhcCCcEEEEccCcchHHHHHHHHHHHH
Q 007774 51 PVILSGRHVLVNAATGTGKTVAYLAPIINH 80 (590)
Q Consensus 51 ~~il~g~dvlv~a~TGsGKTl~~l~pil~~ 80 (590)
..+-.+.++++.||+|+|||........+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 344467899999999999997665544443
No 208
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.57 E-value=0.006 Score=69.29 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=97.2
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhc---------CCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceE
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSY---------SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~---------~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~ 126 (590)
|+++++.-..|+|||.+-+.-.+..+-.. ...........+|||+|. ++..||++++....... +.+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~--lKv- 449 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL--LKV- 449 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc--ceE-
Confidence 57889999999999998766554432110 000011223558999997 67899999999886632 233
Q ss_pred EEEcCCchHHHH-HHhcCCCcEEEECChHHHHHHhccCCC-----------------CCCcee--EEEEechhhhhhcCc
Q 007774 127 YVMGGENRSKEK-ARLRKGISILVATPGRLLDHLKHTSSF-----------------LHTNLR--WIIFDEADRILELGF 186 (590)
Q Consensus 127 ~~~gg~~~~~~~-~~l~~~~~IlV~Tp~rl~~~l~~~~~~-----------------~~~~l~--~lVlDEah~ll~~gf 186 (590)
+++-|....... ...--.+|||++|+..|..-+.++... .+-.+. -+++|||+.+-. -
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--s 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--S 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--h
Confidence 333343222111 111135899999999997665543111 001111 289999996544 5
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHH
Q 007774 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234 (590)
Q Consensus 187 ~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~ 234 (590)
.....+++..|+ .....++|+|+-..+..+..
T Consensus 528 sS~~a~M~~rL~----------------~in~W~VTGTPiq~Iddl~~ 559 (1394)
T KOG0298|consen 528 SSAAAEMVRRLH----------------AINRWCVTGTPIQKIDDLFP 559 (1394)
T ss_pred HHHHHHHHHHhh----------------hhceeeecCCchhhhhhhHH
Confidence 677778888887 46678999997555555544
No 209
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.50 E-value=0.0091 Score=58.21 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=62.9
Q ss_pred HHHHHhhccCccEEEeccccccCCCCCC--------CcEEEEecCCCChhHHHhhhccccCCCCC-ccEEEEeC---ccc
Q 007774 377 TTFGAFKTEKKALLLSTDVAARGLDFPK--------VKCIIQYDSAGEATEYVHRVGRTARLGER-GDSLLFLQ---PVE 444 (590)
Q Consensus 377 ~~~~~F~~~~~~vLiaTdv~~rGlDip~--------v~~VI~~d~p~s~~~yiqr~GRt~R~g~~-g~~i~~l~---~~e 444 (590)
...+.|.+|+..|+|.|+.++.|+.+.. -.+-|...+||+....+|..||+.|.|+. ...+.++. +.|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5678999999999999999999998852 33567889999999999999999999973 44455443 468
Q ss_pred hHHHHHHHHc
Q 007774 445 MDYLQDLEKH 454 (590)
Q Consensus 445 ~~~~~~l~~~ 454 (590)
..|...+.++
T Consensus 132 ~Rfas~va~r 141 (278)
T PF13871_consen 132 RRFASTVARR 141 (278)
T ss_pred HHHHHHHHHH
Confidence 8888777664
No 210
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.40 E-value=0.041 Score=53.17 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.7
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
..+++.+++|+|||.....
T Consensus 100 ~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999976544
No 211
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.29 E-value=0.045 Score=50.66 Aligned_cols=48 Identities=27% Similarity=0.260 Sum_probs=33.6
Q ss_pred EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
++|.|++|+|||...+-.+.+.+. .|..+++++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999877666666553 2556787765 45666766666554
No 212
>PRK06921 hypothetical protein; Provisional
Probab=96.28 E-value=0.065 Score=52.70 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=27.5
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 109 (590)
.+.++++.|+||+|||..... +...+.. ..+..++++. ..++..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~a-ia~~l~~-------~~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTA-AANELMR-------KKGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHH-HHHHHhh-------hcCceEEEEE-HHHHHHHH
Confidence 356899999999999965433 3343432 1144555554 44554443
No 213
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.26 E-value=0.051 Score=47.46 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.4
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
++.+++.|++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999533
No 214
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.17 E-value=0.042 Score=54.81 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=45.3
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCC--cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH
Q 007774 35 ERLGFEAPTKVQAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (590)
Q Consensus 35 ~~~g~~~~t~~Q~~~i~~il~g~--dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL 105 (590)
+.+|+..-...|.-|+..++... =|.+.++.|||||+-++.+.++..... ..-.++|+-=|+..+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~------~~y~KiiVtRp~vpv 288 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER------KRYRKIIVTRPTVPV 288 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH------hhhceEEEecCCcCc
Confidence 34688755667777788888653 378899999999998888877765432 223456666676544
No 215
>PRK06893 DNA replication initiation factor; Validated
Probab=96.15 E-value=0.025 Score=54.44 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=29.5
Q ss_pred ceeEEEEechhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeeccc
Q 007774 169 NLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (590)
Q Consensus 169 ~l~~lVlDEah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~ 226 (590)
+.++|||||+|.+.. ..+...+..+++.+... ..+++++|++.+
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--------------~~~illits~~~ 135 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--------------GKTLLLISADCS 135 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--------------CCcEEEEeCCCC
Confidence 567899999998763 33555667777766531 345667777754
No 216
>PRK08727 hypothetical protein; Validated
Probab=96.09 E-value=0.038 Score=53.35 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=14.6
Q ss_pred CcEEEEccCcchHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l 74 (590)
..+++.|++|+|||....
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 359999999999996443
No 217
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.07 E-value=0.14 Score=51.96 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=28.4
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.+.++++.|+||+|||..... +...+.. .|..+++ ++..+|..++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~a-Ia~~l~~--------~g~~V~y-~t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNC-IAKELLD--------RGKSVIY-RTADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH--------CCCeEEE-EEHHHHHHHHH
Confidence 357899999999999975443 3333432 2444544 45556655543
No 218
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.05 E-value=0.18 Score=45.09 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=23.4
Q ss_pred EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
+++.|++|+|||......+.... . .+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-~--------~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-T--------KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-h--------cCCEEEEEECCcc
Confidence 68999999999976555444332 1 2455666665433
No 219
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.04 E-value=0.05 Score=58.11 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=20.5
Q ss_pred ceeEEEEechhhhhhcC-chHHHHHHHHHhcc
Q 007774 169 NLRWIIFDEADRILELG-FGKEIEEILDILGS 199 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~g-f~~~l~~il~~l~~ 199 (590)
+.++|||||+|.+.... ....+-.+++.+..
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~ 242 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE 242 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH
Confidence 56689999999875432 23456666666654
No 220
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.00 E-value=0.028 Score=62.44 Aligned_cols=122 Identities=23% Similarity=0.234 Sum_probs=74.3
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 41 APTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
.+..-|++|+-.++..+| .+|.+-+|+|||-+... ++..|.. .|.++|+.+-|..-+.-+---++.+.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~--------~gkkVLLtsyThsAVDNILiKL~~~~-- 737 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA--------LGKKVLLTSYTHSAVDNILIKLKGFG-- 737 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH--------cCCeEEEEehhhHHHHHHHHHHhccC--
Confidence 578899999999887766 69999999999965433 3444432 36779999988766544443333321
Q ss_pred cCCcceEEE-EcC-CchHHHH-----------------HHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh
Q 007774 120 FHWIVPGYV-MGG-ENRSKEK-----------------ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (590)
Q Consensus 120 ~~~~~~~~~-~gg-~~~~~~~-----------------~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ 180 (590)
...+ .|. .....+. ...-..+.|+.+|==-+.+ ..|....+++.|+|||-.
T Consensus 738 -----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~~R~FD~cIiDEASQ 807 (1100)
T KOG1805|consen 738 -----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFVNRQFDYCIIDEASQ 807 (1100)
T ss_pred -----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhhccccCEEEEccccc
Confidence 1111 121 1111111 1222356788888332322 233446789999999998
Q ss_pred hhh
Q 007774 181 ILE 183 (590)
Q Consensus 181 ll~ 183 (590)
+..
T Consensus 808 I~l 810 (1100)
T KOG1805|consen 808 ILL 810 (1100)
T ss_pred ccc
Confidence 654
No 221
>PRK05642 DNA replication initiation factor; Validated
Probab=95.96 E-value=0.049 Score=52.57 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=22.7
Q ss_pred ceeEEEEechhhhhh-cCchHHHHHHHHHhcc
Q 007774 169 NLRWIIFDEADRILE-LGFGKEIEEILDILGS 199 (590)
Q Consensus 169 ~l~~lVlDEah~ll~-~gf~~~l~~il~~l~~ 199 (590)
..++||+|++|.+.. ..+...+..+++.+..
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~ 128 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRD 128 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHh
Confidence 456899999997753 2456778888887764
No 222
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.94 E-value=0.088 Score=51.83 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=55.9
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCC---CCeeEEEEcCcHHHHHHHHHHHHH-HHhhcCCcceEEEEcCC
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS---SGTFALVLVPTRELCLQVYEILHK-LLHRFHWIVPGYVMGGE 132 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~---~~~~~lil~PtreLa~Q~~~~~~~-~~~~~~~~~~~~~~gg~ 132 (590)
-++++.|+||.|||. +++.+....+..... .-+.+.+-+|...=..-.+..+-. +..++ ...
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~---------~~~ 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY---------RPR 127 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc---------CCC
Confidence 479999999999997 334444332211111 124556667776555555554332 22211 111
Q ss_pred chHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHh
Q 007774 133 NRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (590)
Q Consensus 133 ~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l 197 (590)
........ ....++.. -.+++|||||.|+++..... ..+.+++.+
T Consensus 128 ~~~~~~~~-------------~~~~llr~------~~vrmLIIDE~H~lLaGs~~-~qr~~Ln~L 172 (302)
T PF05621_consen 128 DRVAKLEQ-------------QVLRLLRR------LGVRMLIIDEFHNLLAGSYR-KQREFLNAL 172 (302)
T ss_pred CCHHHHHH-------------HHHHHHHH------cCCcEEEeechHHHhcccHH-HHHHHHHHH
Confidence 11111110 12234433 37889999999999876443 234444443
No 223
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.89 E-value=0.057 Score=60.34 Aligned_cols=69 Identities=23% Similarity=0.165 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.+++-|++++-. ...+++|.|..|||||.+.+--+...+.... ..+..+|+++.|+..|..+.+.+...
T Consensus 196 ~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 196 PLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 599999999853 3457899999999999887766665554321 23567999999999999998888765
No 224
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.098 Score=53.71 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=63.6
Q ss_pred ccCCCCCHHHHHHHHHhCCC----CCC---cHHHHHHHHH----H-------hcCCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 20 FSSLGLHSTLCDQLRERLGF----EAP---TKVQAQAIPV----I-------LSGRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 20 f~~l~l~~~l~~~l~~~~g~----~~~---t~~Q~~~i~~----i-------l~g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
+...|+++.+.+.|.+.+.- ..+ ..|....+.. + -.|..+++.+|||+|||......+....
T Consensus 83 L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 83 LFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred HHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667888888877665421 111 2233333211 1 1256789999999999987766554443
Q ss_pred hhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH
Q 007774 82 QSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL 155 (590)
Q Consensus 82 ~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl 155 (590)
... ...++.+++ +...-.--.+.+..+...+. +.......+.........+...--|+|=|+|+.
T Consensus 163 ~~~-------G~~~V~lit-~D~~R~ga~EqL~~~a~~~g-v~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 163 MRF-------GASKVALLT-TDSYRIGGHEQLRIFGKILG-VPVHAVKDGGDLQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred Hhc-------CCCeEEEEe-cccccccHHHHHHHHHHHcC-CceEecCCcccHHHHHHHhcCCCEEEEcCCCCC
Confidence 221 112333333 22221111233444443333 222222233334444455555555888899876
No 225
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.86 E-value=0.07 Score=50.90 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=63.7
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 137 (590)
-+++.|++|+|||- .+..+...+... ..+.+++++... +....+.+.+.. .
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~------~~~~~v~y~~~~-~f~~~~~~~~~~----------------~----- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQ------HPGKRVVYLSAE-EFIREFADALRD----------------G----- 86 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHH------CTTS-EEEEEHH-HHHHHHHHHHHT----------------T-----
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhc------cccccceeecHH-HHHHHHHHHHHc----------------c-----
Confidence 48999999999997 344444444432 234556666543 444443333331 0
Q ss_pred HHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhc-CchHHHHHHHHHhccCCCCCCCCCCCccccCc
Q 007774 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216 (590)
Q Consensus 138 ~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~-gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~ 216 (590)
....+.+.+ ...++|+||..|.+.+. .+...+-.+++.+... ..
T Consensus 87 -------------~~~~~~~~~--------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--------------~k 131 (219)
T PF00308_consen 87 -------------EIEEFKDRL--------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--------------GK 131 (219)
T ss_dssp -------------SHHHHHHHH--------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--------------TS
T ss_pred -------------cchhhhhhh--------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--------------CC
Confidence 011122222 36788999999988654 3567777888887653 56
Q ss_pred eEEEEeecccchH
Q 007774 217 QNLLLSATLNEKV 229 (590)
Q Consensus 217 q~il~SAT~~~~~ 229 (590)
++++.|...|..+
T Consensus 132 ~li~ts~~~P~~l 144 (219)
T PF00308_consen 132 QLILTSDRPPSEL 144 (219)
T ss_dssp EEEEEESS-TTTT
T ss_pred eEEEEeCCCCccc
Confidence 7777776766543
No 226
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.86 E-value=0.034 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=19.2
Q ss_pred cEEEEccCcchHHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINH 80 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~ 80 (590)
+.++.+|.|+|||-+.++..-+.
T Consensus 59 ~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHHh
Confidence 57999999999998887766554
No 227
>PRK14974 cell division protein FtsY; Provisional
Probab=95.85 E-value=0.08 Score=53.70 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=67.2
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc---HHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT---RELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt---reLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
-+++.+++|+|||.+....+ ..+.. .+.+++++... .....|+......+. ..+.....|+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~--------~g~~V~li~~Dt~R~~a~eqL~~~a~~lg----v~v~~~~~g~d-- 206 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK--------NGFSVVIAAGDTFRAGAIEQLEEHAERLG----VKVIKHKYGAD-- 206 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH--------cCCeEEEecCCcCcHHHHHHHHHHHHHcC----CceecccCCCC--
Confidence 47899999999997655444 33332 24456555532 344456555444431 11111111111
Q ss_pred HHHHHHhcCCCcEEEECChH-HHHHHhccCCCCCCceeEEEEechhhhh-hcCchHHHHHHHHHhccCCCCCCCCCCCcc
Q 007774 135 SKEKARLRKGISILVATPGR-LLDHLKHTSSFLHTNLRWIIFDEADRIL-ELGFGKEIEEILDILGSRNIGSIGEGNEVS 212 (590)
Q Consensus 135 ~~~~~~l~~~~~IlV~Tp~r-l~~~l~~~~~~~~~~l~~lVlDEah~ll-~~gf~~~l~~il~~l~~~~~~~~~~~~~~~ 212 (590)
|.. +.+.+.... ..+.++|++|.|.++- +...-..+..+...+..
T Consensus 207 -----------------p~~v~~~ai~~~~---~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p------------- 253 (336)
T PRK14974 207 -----------------PAAVAYDAIEHAK---ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP------------- 253 (336)
T ss_pred -----------------HHHHHHHHHHHHH---hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC-------------
Confidence 111 112221111 1356789999999875 33455666666665542
Q ss_pred ccCceEEEEeecccchHHHHHH
Q 007774 213 NVKRQNLLLSATLNEKVNHLAK 234 (590)
Q Consensus 213 ~~~~q~il~SAT~~~~~~~l~~ 234 (590)
...++.++||........+.
T Consensus 254 --d~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 254 --DLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred --ceEEEeeccccchhHHHHHH
Confidence 45678889987655444444
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.85 E-value=0.019 Score=49.79 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=25.9
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL 105 (590)
+..+++.+|+|||||...... +..+.. .+..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~--------~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGP--------PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCC--------CCCCEEEECCEEcc
Confidence 467899999999999755443 332221 11347777776543
No 229
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.81 E-value=0.064 Score=56.51 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=25.6
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
..+++.|++|+|||.... .+...+... ..+..++++.. .++..
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~------~~~~~v~yi~~-~~~~~ 179 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN------NPNAKVVYVSS-EKFTN 179 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh------CCCCcEEEEEH-HHHHH
Confidence 357999999999997553 344444331 22455676643 34433
No 230
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.78 E-value=0.032 Score=54.44 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=43.9
Q ss_pred CCCCCCcHHHHHHHHHHh-------cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHH
Q 007774 37 LGFEAPTKVQAQAIPVIL-------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i~~il-------~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 109 (590)
+.|......+..++..+. ++.++++.|++|+|||..+.....+.+ . .| .-++++++.+|+.++
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--------~g-~sv~f~~~~el~~~L 148 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K--------AG-ISVLFITAPDLLSKL 148 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H--------cC-CeEEEEEHHHHHHHH
Confidence 344445555555443332 577999999999999986655444444 3 12 346667777887777
Q ss_pred HHHHH
Q 007774 110 YEILH 114 (590)
Q Consensus 110 ~~~~~ 114 (590)
.....
T Consensus 149 k~~~~ 153 (254)
T COG1484 149 KAAFD 153 (254)
T ss_pred HHHHh
Confidence 66554
No 231
>PRK12377 putative replication protein; Provisional
Probab=95.78 E-value=0.17 Score=49.13 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=28.5
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 112 (590)
..++++.|++|+|||..... +...+.. .|..+ +.++..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~--------~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLA--------KGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH--------cCCCe-EEEEHHHHHHHHHHH
Confidence 35799999999999965444 3333332 23334 444555666655443
No 232
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.77 E-value=0.058 Score=64.73 Aligned_cols=124 Identities=20% Similarity=0.183 Sum_probs=81.0
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 121 (590)
+|+-|.++|. ..+++++|.|..|||||.+.+--++..+... ....++++|+=|+..|..+.+.+...+....
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 6899999997 4688999999999999998887777776542 1224599999999999999988877654221
Q ss_pred CcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCC-ceeEEEEechhh
Q 007774 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHT-NLRWIIFDEADR 180 (590)
Q Consensus 122 ~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~-~l~~lVlDEah~ 180 (590)
... .......+.+..-...-|+|-..+...+.......+. +-.+=|.||...
T Consensus 74 ~~~-------p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 QQE-------PNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred hcC-------chhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 100 0111122222223457799998886655443222110 113356898875
No 233
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.75 E-value=0.16 Score=61.13 Aligned_cols=63 Identities=27% Similarity=0.299 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHH--HHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAY--LAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~--l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.+++-|.+|+..++.. +-++|++..|+|||.+. ++-++..+.. ..+..++.++||---+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-------ccCceEEEEechHHHHHHHH
Confidence 5999999999999965 66899999999999763 2333333221 24567899999987766654
No 234
>PRK08116 hypothetical protein; Validated
Probab=95.74 E-value=0.16 Score=50.05 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=26.8
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
..+++.|++|+|||..+.. +.+.+.. .+..+++ .+..+|..++.
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~--------~~~~v~~-~~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIE--------KGVPVIF-VNFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHH--------cCCeEEE-EEHHHHHHHHH
Confidence 3499999999999976554 5555543 1333444 44455554443
No 235
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.71 E-value=0.067 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.1
Q ss_pred cCCcEEEEccCcchHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~ 75 (590)
.+..+++.|++|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356899999999999976544
No 236
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.70 E-value=0.029 Score=62.96 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
.+++-|++++.. ....++|.|..|||||.+...-+...+.... -...++|+|+.|+..|.++.+.+..++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 378999999875 3457999999999999987777777664311 134679999999999999999888764
No 237
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.097 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.5
Q ss_pred CcEEEEccCcchHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPII 78 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil 78 (590)
+.+++.+|||+|||.+..-.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999987655443
No 238
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.69 E-value=0.043 Score=59.07 Aligned_cols=127 Identities=18% Similarity=0.147 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 44 KVQAQAIPVILS-----G----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 44 ~~Q~~~i~~il~-----g----~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
|||+-.+..+.. | +.+++.-+=|.|||......++..+.-. ...+..+++.+++++-|..+++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 677777766652 2 3588999999999986655555444321 1346789999999999999999999
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhc-cCCCCCCceeEEEEechhhhhh
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH-TSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~~~~~l~~lVlDEah~ll~ 183 (590)
.+....+..... .+.. .... ..-.|.....+.++..+.. .....=.+..++|+||+|..-+
T Consensus 76 ~~i~~~~~l~~~--~~~~----~~~~--~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~ 137 (477)
T PF03354_consen 76 KMIEASPELRKR--KKPK----IIKS--NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD 137 (477)
T ss_pred HHHHhChhhccc--hhhh----hhhh--hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC
Confidence 988753322110 0000 0000 0112333222333322222 1222223567999999998655
No 239
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.62 E-value=0.12 Score=64.57 Aligned_cols=136 Identities=17% Similarity=0.211 Sum_probs=80.9
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
.+++-|.+++..++.. +=.+|.++.|+|||.+ +-.+++.+. ..|..+++++||.--+.++.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~--------~~G~~V~~lAPTgrAA~~L~e~~g~~A~ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLAS--------EQGYEIQIITAGSLSAQELRQKIPRLAS 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHH--------hcCCeEEEEeCCHHHHHHHHHHhcchhh
Confidence 3889999999998875 4579999999999954 333444443 2467899999998877776654321100
Q ss_pred hcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhc
Q 007774 119 RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198 (590)
Q Consensus 119 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~ 198 (590)
+.......+..+ .-..|...++ . ....+..-++||+|||-.+ + ...+..++....
T Consensus 500 --------------Ti~~~l~~l~~~--~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl-~---~~~~~~Ll~~a~ 554 (1960)
T TIGR02760 500 --------------TFITWVKNLFND--DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKL-S---NNELLKLIDKAE 554 (1960)
T ss_pred --------------hHHHHHHhhccc--ccchhHHHhh---c--ccCCCCCCCEEEEECCCCC-C---HHHHHHHHHHHh
Confidence 000111111110 1112222222 1 1222346678999999954 3 356777777664
Q ss_pred cCCCCCCCCCCCccccCceEEEEeec
Q 007774 199 SRNIGSIGEGNEVSNVKRQNLLLSAT 224 (590)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~q~il~SAT 224 (590)
.. ..++|++--+
T Consensus 555 ~~--------------garvVlvGD~ 566 (1960)
T TIGR02760 555 QH--------------NSKLILLNDS 566 (1960)
T ss_pred hc--------------CCEEEEEcCh
Confidence 32 5677777655
No 240
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.59 E-value=0.097 Score=50.56 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=21.5
Q ss_pred eeEEEEechhhhhh-cCchHHHHHHHHHhcc
Q 007774 170 LRWIIFDEADRILE-LGFGKEIEEILDILGS 199 (590)
Q Consensus 170 l~~lVlDEah~ll~-~gf~~~l~~il~~l~~ 199 (590)
.++|+|||+|.+.. ..+...+..+++.+..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e 128 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILE 128 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH
Confidence 46899999998753 3456677777777653
No 241
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.57 E-value=0.11 Score=55.30 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=61.9
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 136 (590)
..+++.|++|+|||... ..+...+... ..+.+++++.+ .++..++...+..-. .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------~ 195 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH------------------K 195 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh------------------h
Confidence 35899999999999533 3344444321 23455666555 566655555443200 0
Q ss_pred HHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhc-CchHHHHHHHHHhccCCCCCCCCCCCccccC
Q 007774 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVK 215 (590)
Q Consensus 137 ~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~-gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~ 215 (590)
+...+... +...++|||||+|.+... ...+.+..+++.+... .
T Consensus 196 --------------~~~~~~~~--------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~--------------~ 239 (450)
T PRK14087 196 --------------EIEQFKNE--------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN--------------D 239 (450)
T ss_pred --------------HHHHHHHH--------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc--------------C
Confidence 00111111 135678999999976532 2456677777777642 3
Q ss_pred ceEEEEeecccchH
Q 007774 216 RQNLLLSATLNEKV 229 (590)
Q Consensus 216 ~q~il~SAT~~~~~ 229 (590)
.|+++.|-..|...
T Consensus 240 k~iIltsd~~P~~l 253 (450)
T PRK14087 240 KQLFFSSDKSPELL 253 (450)
T ss_pred CcEEEECCCCHHHH
Confidence 46666655555433
No 242
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.54 E-value=0.13 Score=54.67 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=21.3
Q ss_pred ceeEEEEechhhhhhcC-chHHHHHHHHHhcc
Q 007774 169 NLRWIIFDEADRILELG-FGKEIEEILDILGS 199 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~g-f~~~l~~il~~l~~ 199 (590)
..++|+|||+|.+.+.. ....+..+++.+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~ 225 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD 225 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH
Confidence 46789999999886532 34556666666654
No 243
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.33 E-value=0.042 Score=62.35 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
..+++-|++++.. ....++|.|..|||||.+..--+...+.... -....+|+|+.|+..|..+.+.+..++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-----v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-----ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999865 3468999999999999987776666654311 1346799999999999999999888754
No 244
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.28 E-value=0.024 Score=60.64 Aligned_cols=45 Identities=20% Similarity=0.465 Sum_probs=36.5
Q ss_pred CCCCCCcHHHHHHHHHH----hcCCcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 37 LGFEAPTKVQAQAIPVI----LSGRHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i~~i----l~g~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
++|+ |+.||...+..+ -.|+-.|+.+|||+||||..+-.++..|.
T Consensus 12 fPy~-PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 12 FPYT-PYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCCC-chhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 3454 999999887654 36888899999999999998887777664
No 245
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.26 E-value=0.22 Score=50.47 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=29.9
Q ss_pred ccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCC--cE-EEEccCcchHHHHHH
Q 007774 12 KEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGR--HV-LVNAATGTGKTVAYL 74 (590)
Q Consensus 12 ~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~--dv-lv~a~TGsGKTl~~l 74 (590)
.+.+...+|+++-.++.+.+.+.... ..|+ ++ ++.||+|+|||....
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIV----------------KKGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHH----------------hcCCCCeEEEeeCcCCCCHHHHHH
Confidence 34455667888877777777764321 1222 34 558999999996543
No 246
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.25 E-value=0.18 Score=49.56 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.9
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
.++++.||+|+|||..+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4789999999999976544
No 247
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.08 E-value=0.21 Score=60.95 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=45.6
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.+++.|.+|+..++.+ +-++|.+..|+|||... -.+++.+.... ...+..++.++||---|.++.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~----~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP----ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh----cccCceEEEECCcHHHHHHHH
Confidence 4899999999999975 46899999999999653 23333332110 123566889999987665543
No 248
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.06 E-value=0.1 Score=50.78 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=19.5
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhh
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~ 83 (590)
=+||.+|||||||.+ +..|+.++.+
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 489999999999954 4557777755
No 249
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.04 E-value=0.053 Score=61.56 Aligned_cols=71 Identities=21% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
.+++-|++++.. ....++|.|..|||||.+..--+...+.... -....+|+|+-|+..|.++.+.+.+++.
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 589999999865 3458999999999999987776666654211 1346699999999999999999988754
No 250
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.99 E-value=0.088 Score=57.52 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=77.1
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH-HHHHHHH
Q 007774 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY-EILHKLL 117 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~-~~~~~~~ 117 (590)
..+|+|.+.+..+... +.+++..++-+|||.+.+..+...+. .+...+|++.||.++|..+. +.+..++
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--------~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID--------QDPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE--------eCCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 4789999998887754 57999999999999855544433332 23456999999999999987 5677776
Q ss_pred hhcCCcceEEEEc-----CCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhh
Q 007774 118 HRFHWIVPGYVMG-----GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (590)
Q Consensus 118 ~~~~~~~~~~~~g-----g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll 182 (590)
...+.+. ..+.. +.+.. ....+. |..+.++.-+ +...+.-..++++++||.|...
T Consensus 88 ~~sp~l~-~~~~~~~~~~~~~t~-~~k~f~-gg~l~~~ga~-------S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 RASPVLR-RKLSPSKSRDSGNTI-LYKRFP-GGFLYLVGAN-------SPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HhCHHHH-HHhCchhhcccCCch-hheecC-CCEEEEEeCC-------CCcccccCCcCEEEEechhhcc
Confidence 6443222 22222 11111 112222 3334443321 1122333578999999999874
No 251
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.96 E-value=0.12 Score=58.17 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=68.0
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc-c
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-A 396 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv-~ 396 (590)
.+.+++|.++|...+..+++.++.+... .++.+..+||+++..+|.++++...+|+..|+|+|.. +
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-------------~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll 375 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-------------LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALI 375 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-------------cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh
Confidence 4678999999999999999888775311 1578999999999999999999999999999999964 4
Q ss_pred ccCCCCCCCcEEEEe
Q 007774 397 ARGLDFPKVKCIIQY 411 (590)
Q Consensus 397 ~rGlDip~v~~VI~~ 411 (590)
...+.+.++.+||.-
T Consensus 376 ~~~v~~~~l~lvVID 390 (681)
T PRK10917 376 QDDVEFHNLGLVIID 390 (681)
T ss_pred cccchhcccceEEEe
Confidence 456788899998853
No 252
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.23 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.1
Q ss_pred CcEEEEccCcchHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
+.+++.+|||+|||......+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46799999999999876665544
No 253
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.84 E-value=0.16 Score=57.12 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=75.3
Q ss_pred cCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHH
Q 007774 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (590)
Q Consensus 298 ~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~ 377 (590)
+...|.......+...+. .+.++||.+++.+.+..+++.|++.. +..+..+||+++..+|.+
T Consensus 171 TGSGKT~v~l~~i~~~l~--~g~~vLvLvPt~~L~~Q~~~~l~~~f----------------g~~v~~~~s~~s~~~r~~ 232 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLA--QGKQALVLVPEIALTPQMLARFRARF----------------GAPVAVLHSGLSDGERLD 232 (679)
T ss_pred CCChHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHh----------------CCCEEEEECCCCHHHHHH
Confidence 345677766666655542 35789999999999999998887631 567899999999999999
Q ss_pred HHHHhhccCccEEEeccccccCCCCCCCcEEEEec
Q 007774 378 TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (590)
Q Consensus 378 ~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d 412 (590)
...+..+|+.+|+|+|..+.. +.+.++.+||.-+
T Consensus 233 ~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 233 EWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred HHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 999999999999999975432 5567888888554
No 254
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.81 E-value=0.17 Score=54.63 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
...|....+.++...+ ..+.++||.+++...+..+++.|++.. +..+..+||+++..+|.+.
T Consensus 7 GsGKT~v~l~~i~~~l--~~g~~vLvlvP~i~L~~Q~~~~l~~~f----------------~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVL--ALGKSVLVLVPEIALTPQMIQRFKYRF----------------GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHh----------------CCcEEEEECCCCHHHHHHH
Confidence 4566666666665544 236789999999999999998887641 5568889999999999999
Q ss_pred HHHhhccCccEEEeccccccCCCCCCCcEEEEec
Q 007774 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d 412 (590)
..+..+|+..|+|+|..+.- ..++++.+||.-+
T Consensus 69 ~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 99999999999999976542 4567888888443
No 255
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.71 E-value=0.092 Score=59.21 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.... .....+|+|+.|+..|.++.+.+.+.+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 78889999865 3568999999999999888777777664311 134669999999999999999887764
No 256
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.60 E-value=0.17 Score=53.79 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=63.4
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCcH----HHHHHHHHHh--cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 21 SSLGLHSTLCDQLRERLGFEAPTK----VQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 21 ~~l~l~~~l~~~l~~~~g~~~~t~----~Q~~~i~~il--~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
++.++.++++....++.--..|+. +|.+==..|. .++-++|++..|||||.+++--+...+....... .+.
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l---~~k 261 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL---QAK 261 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc---ccC
Confidence 445555555444334433334544 3444333333 3556899999999999999888877776654332 334
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 95 FALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
.+||+.|.+-+..-+..++-.++.
T Consensus 262 ~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 262 PVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred ceEEEcCcHHHHHHHHHhchhhcc
Confidence 499999999999999999888764
No 257
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.60 E-value=0.31 Score=51.73 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=30.7
Q ss_pred ceeEEEEechhhhhhcC-chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHH
Q 007774 169 NLRWIIFDEADRILELG-FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH 231 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~g-f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~ 231 (590)
..++|+|||+|.+.... ....+..+++.+... ..++++.|-+.|..+..
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~--------------~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE--------------GKLIVISSTCAPQDLKA 251 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC--------------CCcEEEecCCCHHHHhh
Confidence 56789999999876432 345666666666431 45666666555555443
No 258
>PLN03025 replication factor C subunit; Provisional
Probab=94.54 E-value=0.55 Score=47.66 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.0
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
++++.||+|+|||......+
T Consensus 36 ~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALA 55 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999997655533
No 259
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.53 E-value=1.1 Score=48.83 Aligned_cols=136 Identities=19% Similarity=0.224 Sum_probs=84.3
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcc-eEEEEcCCc
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIV-PGYVMGGEN 133 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~-~~~~~gg~~ 133 (590)
..+-.++..|==.|||.... +++..+... ..|..+++.+|.+..+..+++.+...+..+.... +..+. |+.
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk-Ge~ 324 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK-GET 324 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec-CcE
Confidence 34567888888899998665 565544431 2478899999999999999999999877542111 11111 211
Q ss_pred hHHHHHHhcCC--CcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCc
Q 007774 134 RSKEKARLRKG--ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEV 211 (590)
Q Consensus 134 ~~~~~~~l~~~--~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~ 211 (590)
. .-.+..| ..|..+|- .++....=.++++||+|||+-+-+ +.+..++..+...
T Consensus 325 I---~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~----------- 379 (738)
T PHA03368 325 I---SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQT----------- 379 (738)
T ss_pred E---EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhcc-----------
Confidence 1 0001111 23444321 112222234788999999998755 5666666666542
Q ss_pred cccCceEEEEeeccc
Q 007774 212 SNVKRQNLLLSATLN 226 (590)
Q Consensus 212 ~~~~~q~il~SAT~~ 226 (590)
.+++|++|.|-+
T Consensus 380 ---n~k~I~ISS~Ns 391 (738)
T PHA03368 380 ---NCKIIFVSSTNT 391 (738)
T ss_pred ---CccEEEEecCCC
Confidence 688899998854
No 260
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.51 E-value=1.1 Score=41.88 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=28.9
Q ss_pred ceeEEEEechhhhh-hcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchH
Q 007774 169 NLRWIIFDEADRIL-ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV 229 (590)
Q Consensus 169 ~l~~lVlDEah~ll-~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~ 229 (590)
+.+++++|-+-+.. +......+..++..+.. ..-.+.+|||.....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~---------------~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNP---------------DEVHLVLSATMGQED 129 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS---------------SEEEEEEEGGGGGHH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCC---------------ccceEEEecccChHH
Confidence 56778888876543 22234666777777743 566788899986543
No 261
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.49 E-value=0.24 Score=47.49 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=16.4
Q ss_pred cCCcEEEEccCcchHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~ 75 (590)
.+..+++.|++|+|||.....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 345799999999999964433
No 262
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.38 E-value=0.33 Score=52.95 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=31.0
Q ss_pred ceeEEEEechhhhhhc-CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchH
Q 007774 169 NLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV 229 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~-gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~ 229 (590)
++++||||++|.+... .....+..+++.+... ..++|+.|-..+..+
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--------------gk~IIITSd~~P~eL 424 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--------------NKQIVLSSDRPPKQL 424 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhc--------------CCCEEEecCCChHhh
Confidence 5688999999987543 2456677777777642 456666555555443
No 263
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.31 E-value=0.27 Score=51.60 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=78.5
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH-HHHHHHHHHHHHHhhcCCcceEEEEcCCchHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE-LCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre-La~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 136 (590)
-.++.+..|||||.+...-++..+... ..+..++++-||.. |..-++..+...+..++... ......+.-
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~--~~~~~~~~~- 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINY--EFKKSKSSM- 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChh--heeecCCcc-
Confidence 357899999999999888887776652 14577999999976 55556666666555433110 000000000
Q ss_pred HHHHhcCCCcEEEECC-hHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccC
Q 007774 137 EKARLRKGISILVATP-GRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVK 215 (590)
Q Consensus 137 ~~~~l~~~~~IlV~Tp-~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~ 215 (590)
.......|..|++..- +.-.+ + .....+.++.+|||..+.. ..+..++..+.... .
T Consensus 74 ~i~~~~~g~~i~f~g~~d~~~~-i-----k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~-------------~ 130 (396)
T TIGR01547 74 EIKILNTGKKFIFKGLNDKPNK-L-----KSGAGIAIIWFEEASQLTF----EDIKELIPRLRETG-------------G 130 (396)
T ss_pred EEEecCCCeEEEeecccCChhH-h-----hCcceeeeehhhhhhhcCH----HHHHHHHHHhhccC-------------C
Confidence 0000011233444332 11111 1 1123468999999998643 35666665553210 2
Q ss_pred ceEEEEeecccchHHHHHH
Q 007774 216 RQNLLLSATLNEKVNHLAK 234 (590)
Q Consensus 216 ~q~il~SAT~~~~~~~l~~ 234 (590)
...+++|.||......+..
T Consensus 131 ~~~i~~t~NP~~~~~w~~~ 149 (396)
T TIGR01547 131 KKFIIFSSNPESPLHWVKK 149 (396)
T ss_pred ccEEEEEcCcCCCccHHHH
Confidence 2257889998654333333
No 264
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.24 E-value=1.3 Score=47.76 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.7
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
.+|+.||.|+|||.++.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998776643
No 265
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.24 E-value=0.73 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=17.4
Q ss_pred cE-EEEccCcchHHHHHHHHHHHHHh
Q 007774 58 HV-LVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 58 dv-lv~a~TGsGKTl~~l~pil~~l~ 82 (590)
++ +|.|+||+|||++.-. +++.|.
T Consensus 782 nvLYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 44 5999999999987655 344453
No 266
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.10 E-value=0.35 Score=53.85 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=79.6
Q ss_pred CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
.+.|....+.++...+. .+..+||.++....+..+...|+.. |++..+..+|++++..+|.+.
T Consensus 170 GSGKTevyl~~i~~~l~--~Gk~vLvLvPEi~lt~q~~~rl~~~---------------f~~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 170 GEDWARRLAAAAAATLR--AGRGALVVVPDQRDVDRLEAALRAL---------------LGAGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred CCcHHHHHHHHHHHHHH--cCCeEEEEecchhhHHHHHHHHHHH---------------cCCCcEEEECCCCCHHHHHHH
Confidence 46888888888887763 4678999999999999999998865 223578899999999999999
Q ss_pred HHHhhccCccEEEeccccccCCCCCCCcEEEEecC
Q 007774 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~ 413 (590)
..+..+|+.+|+|.|-.+.- .-+++...||..+-
T Consensus 233 w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWDD 266 (665)
T ss_pred HHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEcC
Confidence 99999999999999976532 45567888886653
No 267
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.10 E-value=0.16 Score=53.15 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
+-......+..+..++++++.+++|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445566667777789999999999999997664
No 268
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.07 E-value=0.54 Score=49.63 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.0
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
.+++.||+|+|||..+-.
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999975543
No 269
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.07 E-value=0.91 Score=44.80 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=32.8
Q ss_pred HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
+..|.-+++.|++|+|||...+..+.+.... .+..+++++-- +-..++...+.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEcc-cCHHHHHHHHH
Confidence 4467788999999999997655544444321 25667777642 23344444443
No 270
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.00 E-value=1.4 Score=48.43 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHh---cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 42 PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 42 ~t~~Q~~~i~~il---~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
|.|.=.+=|..++ ..+-.++.+|=|-|||.+..+.+...+.. .+..+++.+|...-+.++++.++..+.
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3454445555544 34567889999999998776555544321 357799999999999999999888876
No 271
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.00 E-value=0.24 Score=50.31 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=30.3
Q ss_pred CCcHHHHHHHHHHhcCC----cEEEEccCcchHHHHHHHHHHHHHh
Q 007774 41 APTKVQAQAIPVILSGR----HVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~----dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
.++|||...+..+.... -.++.+|.|+|||..+.. +...+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHc
Confidence 36899999998887543 378999999999976655 333343
No 272
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.97 E-value=0.15 Score=58.05 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=56.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
..+++-|.+++.. ....++|.|..|||||.+..--+...+.... -...++|+++-|+..|..+.+.+.+++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999975 3468999999999999988777777664321 1245699999999999999998887653
No 273
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.95 E-value=0.59 Score=58.60 Aligned_cols=62 Identities=32% Similarity=0.384 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHH---HHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYL---APIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l---~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.+++.|..|+..++.+ +-++|++..|+|||...- -++.+.+. ..+..++.++||-.-+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~--------~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE--------SEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH--------hcCCeEEEEeChHHHHHHHH
Confidence 5999999999998865 457889999999996551 23434332 24567899999977666554
No 274
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.86 E-value=0.15 Score=51.32 Aligned_cols=58 Identities=24% Similarity=0.340 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHh-cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 42 ~t~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
+++.|...+..+. .++++++.++||||||. ++-.++..+... ..+.+++.+=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~------~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVAS------APEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcC------CCCceEEEecCCcccc
Confidence 6778887776554 56799999999999995 344455554321 1245678877788873
No 275
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.82 E-value=0.04 Score=65.39 Aligned_cols=96 Identities=20% Similarity=0.307 Sum_probs=75.8
Q ss_pred ceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCC-----------hHHHHHHHHHhhccCcc
Q 007774 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMK-----------QEDRRTTFGAFKTEKKA 388 (590)
Q Consensus 320 ~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~-----------~~~R~~~~~~F~~~~~~ 388 (590)
-..|+|+.....+....+++....... +..+.|.+. +..+.+++..|......
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln 356 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSND----------------PLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELN 356 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccC----------------cceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhh
Confidence 467899999888888888877653221 111233221 22457889999999999
Q ss_pred EEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCC
Q 007774 389 LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG 431 (590)
Q Consensus 389 vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g 431 (590)
+|++|.++.+|+|+|.++.|+.++.|.....|+|+.||+-+.+
T Consensus 357 ~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 357 LLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred HHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999999999999999999999986654
No 276
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.81 E-value=1.8 Score=36.95 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.3
Q ss_pred eeEEEEechhhhhhcC
Q 007774 170 LRWIIFDEADRILELG 185 (590)
Q Consensus 170 l~~lVlDEah~ll~~g 185 (590)
-.+|++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4689999999987764
No 277
>PF13173 AAA_14: AAA domain
Probab=93.78 E-value=0.68 Score=39.84 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=20.1
Q ss_pred ceeEEEEechhhhhhcCchHHHHHHHHHh
Q 007774 169 NLRWIIFDEADRILELGFGKEIEEILDIL 197 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~gf~~~l~~il~~l 197 (590)
.-.+|+|||+|.+-+ +...+..+...-
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc
Confidence 345799999999754 777777777654
No 278
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.77 E-value=0.71 Score=48.37 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=17.9
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
.++++.||+|+|||...-. ++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~-v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK-VFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 5799999999999976433 44444
No 279
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.73 E-value=0.29 Score=54.64 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=66.8
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecccc-
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA- 396 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~- 396 (590)
.+.+++|.++|...+..+++.++++... .++.+..+||+++..+|...++...+|+..|+|+|..+
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~-------------~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll 349 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAP-------------LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALI 349 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcc-------------cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH
Confidence 4578999999999999999888765211 16789999999999999999999999999999999654
Q ss_pred ccCCCCCCCcEEEE
Q 007774 397 ARGLDFPKVKCIIQ 410 (590)
Q Consensus 397 ~rGlDip~v~~VI~ 410 (590)
...+++.++.+||.
T Consensus 350 ~~~~~~~~l~lvVI 363 (630)
T TIGR00643 350 QEKVEFKRLALVII 363 (630)
T ss_pred hccccccccceEEE
Confidence 44677888998884
No 280
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.73 E-value=0.15 Score=51.53 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHH-hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH
Q 007774 42 PTKVQAQAIPVI-LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (590)
Q Consensus 42 ~t~~Q~~~i~~i-l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL 105 (590)
+++.|...+..+ ..++++++.++|||||| +++-.++..+... ....+++++-.+.||
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 567788887654 46789999999999999 5555555544211 234568888888887
No 281
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.29 Score=51.84 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=16.2
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
-+|+.||.|+|||.++.+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999998766543
No 282
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.63 E-value=0.63 Score=46.78 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.5
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
++.+++.|++|+|||.....
T Consensus 156 ~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999975544
No 283
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.59 E-value=0.79 Score=50.95 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=83.0
Q ss_pred CCCCCcHHHHHHHHHHhcCC--cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 38 GFEAPTKVQAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il~g~--dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
..+.+..-|.+.+..++.++ -+++.|.=|=|||.+.-+.+...... .....++|.+|+.+-+..+++.+.+
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~-------~~~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL-------AGSVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh-------cCCceEEEeCCCHHHHHHHHHHHHH
Confidence 34445555555566666543 58999999999999887766322211 1146799999999988888887776
Q ss_pred HHhhcCCcceEEEEc-CCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHH
Q 007774 116 LLHRFHWIVPGYVMG-GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (590)
Q Consensus 116 ~~~~~~~~~~~~~~g-g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il 194 (590)
-+...+.-....... |.... .-.....|=.-+|.... ..-++||+|||=-+ --..+..++
T Consensus 284 ~l~~lg~~~~v~~d~~g~~~~----~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI----plplL~~l~ 344 (758)
T COG1444 284 GLEFLGYKRKVAPDALGEIRE----VSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI----PLPLLHKLL 344 (758)
T ss_pred hHHHhCCccccccccccceee----ecCCceeEEeeCcchhc-----------ccCCEEEEehhhcC----ChHHHHHHH
Confidence 655443211000000 11000 00011224444444332 12578999999864 235555665
Q ss_pred HHhccCCCCCCCCCCCccccCceEEEEeeccc
Q 007774 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (590)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~ 226 (590)
... +.++||.|+.
T Consensus 345 ~~~-------------------~rv~~sTTIh 357 (758)
T COG1444 345 RRF-------------------PRVLFSTTIH 357 (758)
T ss_pred hhc-------------------CceEEEeeec
Confidence 554 3489999984
No 284
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.23 Score=54.00 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHh--------cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 42 PTKVQAQAIPVIL--------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 42 ~t~~Q~~~i~~il--------~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
+-.+-.+.+..+. .|-=+++.+|+|.|||- |+.-+++.+
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS---------------------------------LgkSIA~al 374 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS---------------------------------LGKSIAKAL 374 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh---------------------------------HHHHHHHHh
Confidence 4456666665543 24457899999999992 444444444
Q ss_pred HHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHH
Q 007774 114 HKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (590)
Q Consensus 114 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~i 193 (590)
.+ -.+-.-.||-....+.+--++ .-|=+-|||+.+-|...+..+ -+++|||.|.|...-.++--..+
T Consensus 375 ~R-------kfvR~sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSAL 441 (782)
T COG0466 375 GR-------KFVRISLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASAL 441 (782)
T ss_pred CC-------CEEEEecCccccHHHhccccc--cccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHH
Confidence 32 223345677666555432222 245567999999998755432 26999999999887667777777
Q ss_pred HHHhcc
Q 007774 194 LDILGS 199 (590)
Q Consensus 194 l~~l~~ 199 (590)
++-|..
T Consensus 442 LEVLDP 447 (782)
T COG0466 442 LEVLDP 447 (782)
T ss_pred HhhcCH
Confidence 777754
No 285
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.57 E-value=0.21 Score=47.12 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=14.8
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
++++.+|+|+|||.-+-+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 589999999999964443
No 286
>CHL00181 cbbX CbbX; Provisional
Probab=93.47 E-value=0.52 Score=46.95 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=16.9
Q ss_pred CCcEEEEccCcchHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAP 76 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~p 76 (590)
|-++++.+|+|+|||..+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 446899999999999876553
No 287
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.40 E-value=0.53 Score=47.88 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.1
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
+.|+.+|+|+|||-.+-+
T Consensus 50 SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 50 SMILWGPPGTGKTTLARL 67 (436)
T ss_pred eeEEECCCCCCHHHHHHH
Confidence 689999999999975544
No 288
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=1.3 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=19.1
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhh
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQS 83 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~ 83 (590)
.|+++.|+||+|||.+.-. +++.+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 3799999999999976544 4454443
No 289
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.36 E-value=0.43 Score=53.00 Aligned_cols=20 Identities=25% Similarity=0.198 Sum_probs=15.7
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
-+|+.++.|+|||.+..+.+
T Consensus 40 AyLFtGPpGvGKTTlAriLA 59 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFA 59 (830)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999997665533
No 290
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.34 E-value=0.18 Score=54.35 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.0
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
-.|+.||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA 59 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILA 59 (509)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 36999999999997765533
No 291
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.31 E-value=0.34 Score=54.70 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=55.5
Q ss_pred cCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecccc
Q 007774 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (590)
Q Consensus 317 ~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~ 396 (590)
..+.++.+.++|...+...++.|+.+..... .....+. +||.|+.+++.+.+++|.+|..+|||+|...
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~----------~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAG----------SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcC----------Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 4568999999999999999998887642211 1133344 9999999999999999999999999998753
No 292
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.29 E-value=0.42 Score=55.26 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=66.2
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc-ccc
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD-VAA 397 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd-v~~ 397 (590)
+.+++|.++|...+..+++.++..... .++.+..++|..+..++.++++.+.+|+.+|+|+|. .+.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~-------------~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~ 566 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFAN-------------FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQ 566 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcc-------------CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhh
Confidence 578999999999999999988864211 146788899999999999999999999999999996 455
Q ss_pred cCCCCCCCcEEEE
Q 007774 398 RGLDFPKVKCIIQ 410 (590)
Q Consensus 398 rGlDip~v~~VI~ 410 (590)
..+.+.++.+||.
T Consensus 567 ~~v~f~~L~llVI 579 (926)
T TIGR00580 567 KDVKFKDLGLLII 579 (926)
T ss_pred CCCCcccCCEEEe
Confidence 6688889998885
No 293
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.27 E-value=0.021 Score=51.97 Aligned_cols=100 Identities=22% Similarity=0.257 Sum_probs=42.3
Q ss_pred EEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchH-HHH
Q 007774 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS-KEK 138 (590)
Q Consensus 60 lv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~-~~~ 138 (590)
++.|+=|-|||.+.-+.+...+.. ....++|-+|+.+-+..+++.+..-+....... ..... ...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~------~~~~~~~~~ 66 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKE------EKKKRIGQI 66 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccc------ccccccccc
Confidence 578999999998776655444322 225799999999988888887765443222111 00000 000
Q ss_pred HH-hcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhh
Q 007774 139 AR-LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (590)
Q Consensus 139 ~~-l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l 181 (590)
.. ...+..|-...|..+...- ...++||+|||=.+
T Consensus 67 ~~~~~~~~~i~f~~Pd~l~~~~--------~~~DlliVDEAAaI 102 (177)
T PF05127_consen 67 IKLRFNKQRIEFVAPDELLAEK--------PQADLLIVDEAAAI 102 (177)
T ss_dssp ------CCC--B--HHHHCCT------------SCEEECTGGGS
T ss_pred cccccccceEEEECCHHHHhCc--------CCCCEEEEechhcC
Confidence 00 0113455566666553221 23578999999864
No 294
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.24 E-value=0.18 Score=46.32 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=27.9
Q ss_pred hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 109 (590)
-.++++++.|++|+|||..+...+-+.+. .|..+++ +++.+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~---------~g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR---------KGYSVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH---------TT--EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc---------CCcceeE-eecCceeccc
Confidence 35789999999999999876554444443 2444555 4555665554
No 295
>PTZ00293 thymidine kinase; Provisional
Probab=93.24 E-value=0.68 Score=43.43 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=26.1
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
|+=-++.+|+|||||.-.+-.+.... . .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~-~--------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFT-Y--------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHH-H--------cCCceEEEEecc
Confidence 44468899999999955544433332 2 356689998863
No 296
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.10 E-value=0.98 Score=44.94 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.4
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
+.++++.+|+|+|||..+..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 34799999999999976643
No 297
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.06 E-value=1.4 Score=47.07 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=28.8
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC---CcEEEEccCcchHHHHHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG---RHVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g---~dvlv~a~TGsGKTl~~l~pi 77 (590)
..+|+++--.+.+.+.|.+. +..| ...|+.||.|+|||.++.+.+
T Consensus 9 P~~f~dliGQe~vv~~L~~a----------------~~~~ri~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNA----------------FTLNKIPQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHH----------------HHcCCCCceEEEECCCCccHHHHHHHHH
Confidence 45666665566666655322 1223 358999999999998766543
No 298
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.99 E-value=1.3 Score=45.21 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=15.8
Q ss_pred cEEEEccCcchHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAP 76 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~p 76 (590)
.+++.||+|+|||......
T Consensus 38 ~lll~Gp~GtGKT~la~~~ 56 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRAL 56 (337)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6999999999999765443
No 299
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.98 E-value=0.16 Score=51.81 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=30.4
Q ss_pred HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
+..++++++.++||||||. ++-.++..+- ...+++.+=.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTT-ll~aLl~~i~---------~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTT-MSKTLISAIP---------PQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHH-HHHHHHcccC---------CCCCEEEECCCcccc
Confidence 3467899999999999995 3344444431 234577788888773
No 300
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.96 E-value=1.2 Score=50.59 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.4
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
..++++.+|+|+|||..+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45899999999999976433
No 301
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.95 E-value=1.2 Score=48.82 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=30.5
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pi 77 (590)
+-..+|+++--.+.+.+.|.+.+.-.+ -++-.|+.||.|+|||.++-+.+
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~~-------------~~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQGK-------------ISHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcCC-------------CCeEEEEECCCCCCHHHHHHHHH
Confidence 344567777556666666643211110 12347889999999998766543
No 302
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.93 E-value=1.1 Score=42.95 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=32.6
Q ss_pred hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
-.|.-+++.+++|+|||...+-.+...+. .|.++++++.. +-..+..+.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---------~g~~~~yi~~e-~~~~~~~~~~~ 72 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQ---------NGYSVSYVSTQ-LTTTEFIKQMM 72 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh---------CCCcEEEEeCC-CCHHHHHHHHH
Confidence 35778999999999999765554554432 24567888743 33344444443
No 303
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.93 E-value=0.31 Score=48.85 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHHh-cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 42 ~t~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
+++-|...+..+. .++++++.++||||||.. +-.++..+... ..+.+++.+=.+.|+.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~------~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN------DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc------CCCceEEEECCchhhc
Confidence 5566666665544 567999999999999954 34455554321 1245688888888873
No 304
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.91 Score=49.54 Aligned_cols=111 Identities=22% Similarity=0.379 Sum_probs=69.1
Q ss_pred CcHHHHHHHHHHh--------cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 42 PTKVQAQAIPVIL--------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 42 ~t~~Q~~~i~~il--------~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
|-.+-++.+..+. +|+-+.+.+|+|.|||-.. .-++..+
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~---------------------------------kSIA~AL 462 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA---------------------------------KSIARAL 462 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH---------------------------------HHHHHHh
Confidence 7788888888774 3567899999999999432 2222222
Q ss_pred HHHHhhcCCcceEEEEcCCchHHHHHHhcCCC-cEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHH
Q 007774 114 HKLLHRFHWIVPGYVMGGENRSKEKARLRKGI-SILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 192 (590)
Q Consensus 114 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~ 192 (590)
.. .|. -.-+||-....+ ++..- .-+=+.||++.+.|...+.-+ -++.|||+|.+.....++--..
T Consensus 463 nR---kFf----RfSvGG~tDvAe---IkGHRRTYVGAMPGkiIq~LK~v~t~N----PliLiDEvDKlG~g~qGDPasA 528 (906)
T KOG2004|consen 463 NR---KFF----RFSVGGMTDVAE---IKGHRRTYVGAMPGKIIQCLKKVKTEN----PLILIDEVDKLGSGHQGDPASA 528 (906)
T ss_pred CC---ceE----EEeccccccHHh---hcccceeeeccCChHHHHHHHhhCCCC----ceEEeehhhhhCCCCCCChHHH
Confidence 21 111 123455543333 33222 345568999999998754332 2689999999884444566666
Q ss_pred HHHHhcc
Q 007774 193 ILDILGS 199 (590)
Q Consensus 193 il~~l~~ 199 (590)
+++.|..
T Consensus 529 LLElLDP 535 (906)
T KOG2004|consen 529 LLELLDP 535 (906)
T ss_pred HHHhcCh
Confidence 6666653
No 305
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.83 E-value=0.65 Score=45.74 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHHh----cC-CcEEEEccCcchHHHHHH
Q 007774 41 APTKVQAQAIPVIL----SG-RHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~g-~dvlv~a~TGsGKTl~~l 74 (590)
.+++.+.+++..+. .+ ..+++.|++|+|||...-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 36667777776553 22 358999999999996544
No 306
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.82 E-value=0.87 Score=51.30 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.1
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
++++.||+|+|||..+-.
T Consensus 54 slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 54 SLILYGPPGVGKTTLARI 71 (725)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999975543
No 307
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.76 E-value=1.8 Score=39.95 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.4
Q ss_pred hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEE
Q 007774 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil 99 (590)
+....+++..++|.|||-+++--++..+- .|.+++++
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g---------~G~~V~iv 56 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG---------HGKKVGVV 56 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH---------CCCeEEEE
Confidence 35568999999999999988887777663 35566665
No 308
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.75 E-value=1.7 Score=38.91 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=36.1
Q ss_pred CceeEEEEechhhhhhcCch--HHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHh
Q 007774 168 TNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI 235 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~--~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~ 235 (590)
..+++|||||+=-.++.|+- +.+..+++..|. ..-+|+.+-.+|+.+...+..
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~---------------~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE---------------DLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC---------------CCEEEEECCCCCHHHHHhCce
Confidence 57899999999988887763 555555555543 445666666677777666553
No 309
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.71 E-value=1.6 Score=46.48 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=86.9
Q ss_pred CcHHHHHHHHHHhc------C----CcEEEEccCcchHHHHHH-HHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 42 PTKVQAQAIPVILS------G----RHVLVNAATGTGKTVAYL-APIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 42 ~t~~Q~~~i~~il~------g----~dvlv~a~TGsGKTl~~l-~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
+-|||.-.+-.+.. | +.++|..|=|-|||.... +.+...+... ..+....|++|+.+-+.+.+
T Consensus 62 l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 62 LEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred cchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh------hcCCcEEEEeccHHHHHHhh
Confidence 78999999988872 2 347999999999996544 3333333321 35677999999999999999
Q ss_pred HHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH---HHHHhc-cCCCCCCceeEEEEechhhhhhcCc
Q 007774 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL---LDHLKH-TSSFLHTNLRWIIFDEADRILELGF 186 (590)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl---~~~l~~-~~~~~~~~l~~lVlDEah~ll~~gf 186 (590)
+.++........+ .....-..+-...+.+.. +..+.. .....-.+..+.|+||.|...+.+
T Consensus 136 ~~ar~mv~~~~~l--------------~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 136 NPARDMVKRDDDL--------------RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred HHHHHHHHhCcch--------------hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 9998876633210 111111122222222222 112211 122233456689999999744422
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeec
Q 007774 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSAT 224 (590)
Q Consensus 187 ~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT 224 (590)
..+..+..-+..+ ++.+++..|-.
T Consensus 201 -~~~~~~~~g~~ar-------------~~~l~~~ITT~ 224 (546)
T COG4626 201 -DMYSEAKGGLGAR-------------PEGLVVYITTS 224 (546)
T ss_pred -HHHHHHHhhhccC-------------cCceEEEEecC
Confidence 4455555444432 26777777653
No 310
>PRK04195 replication factor C large subunit; Provisional
Probab=92.62 E-value=0.93 Score=48.92 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=30.5
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
+...+|+++-.++.....|.+-. ..++.. ...+.+++.||+|+|||...-.
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l-----~~~~~g-----~~~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWI-----ESWLKG-----KPKKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHH-----HHHhcC-----CCCCeEEEECCCCCCHHHHHHH
Confidence 44566777766776666663210 111100 0146799999999999965543
No 311
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.61 E-value=0.38 Score=48.04 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=53.2
Q ss_pred cccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCC-cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCC
Q 007774 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGR-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 91 (590)
Q Consensus 13 ~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~-dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~ 91 (590)
+.++-..|..-.| .+..| ..|..+++-|...+..+..++ |+++++.||||||.. +-++... . .
T Consensus 135 p~lsIRKf~k~~l---tl~dl---i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~---i-----~ 198 (355)
T COG4962 135 PTLSIRKFPKIKL---TLLDL---IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGF---I-----D 198 (355)
T ss_pred Ccccccccccccc---cHHHH---HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhc---C-----C
Confidence 3444455554322 23344 257789999999998888776 999999999999952 2222211 1 1
Q ss_pred CCeeEEEEcCcHHHHHHHH
Q 007774 92 SGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 92 ~~~~~lil~PtreLa~Q~~ 110 (590)
...++|.+=-|.||..+.-
T Consensus 199 ~~eRvItiEDtaELql~~p 217 (355)
T COG4962 199 SDERVITIEDTAELQLAHP 217 (355)
T ss_pred CcccEEEEeehhhhccCCC
Confidence 2337999999988855433
No 312
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.58 Score=52.26 Aligned_cols=18 Identities=39% Similarity=0.338 Sum_probs=14.6
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
.+++.+|||.|||..+-.
T Consensus 523 sFlF~GPTGVGKTELAka 540 (786)
T COG0542 523 SFLFLGPTGVGKTELAKA 540 (786)
T ss_pred EEEeeCCCcccHHHHHHH
Confidence 579999999999975533
No 313
>PF05729 NACHT: NACHT domain
Probab=92.59 E-value=1 Score=40.22 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=26.1
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 108 (590)
-++|.|++|+|||.... -++..+...... ......++..+.+....+
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLAEEEPP---PSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHHhcCcc---cccceEEEEEeehhhhhc
Confidence 37899999999996543 444444432211 001235555555555443
No 314
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.49 E-value=0.97 Score=48.05 Aligned_cols=51 Identities=24% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
|.-+++.+++|+|||...+..+.... . .+.++++++- .|-..|+...+..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a-~--------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA-A--------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 45679999999999976555444432 1 2456788774 45566776665543
No 315
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.47 E-value=1.5 Score=49.13 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=18.2
Q ss_pred CcEEEEccCcchHHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINH 80 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~ 80 (590)
+-+.+.+|||+|||.+....+...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhH
Confidence 447899999999998776655433
No 316
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.43 E-value=2 Score=45.73 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=60.7
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE-EEEcCc-HHHHHHHHHHHHHHHhhcCCcceEEEEcCCc
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA-LVLVPT-RELCLQVYEILHKLLHRFHWIVPGYVMGGEN 133 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~-lil~Pt-reLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~ 133 (590)
|+-+.+.+|||+|||.+....+...... ..+.++ +|-+-+ |.-+ .+.+..+....+ +.......+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~-------~G~~kV~LI~~Dt~RigA---~EQLr~~AeilG-Vpv~~~~~~~D 324 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR-------HGASKVALLTTDSYRIGG---HEQLRIYGKILG-VPVHAVKDAAD 324 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh-------cCCCeEEEEeCCccchhH---HHHHHHHHHHhC-CCeeccCCchh
Confidence 4457899999999998776655433222 111123 333322 3222 233333333222 11111112222
Q ss_pred hHHHHHHhcCCCcEEEECChHHHHH------HhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 134 RSKEKARLRKGISILVATPGRLLDH------LKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 134 ~~~~~~~l~~~~~IlV~Tp~rl~~~------l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
.......+...-.++|-|+|+.... +..-.......=.+||||..=. ...+..+...+..
T Consensus 325 l~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~------~~~l~~i~~~f~~ 390 (484)
T PRK06995 325 LRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH------GDTLNEVVQAYRG 390 (484)
T ss_pred HHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc------HHHHHHHHHHhcc
Confidence 3333444555567999999965322 1110011101115788888542 3556666665543
No 317
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.41 E-value=0.45 Score=49.45 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=88.8
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 28 ~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
.+++.+.. .+..+-.-|.++.=..-.|+- .+++=.|||||...++-+.+. ... ....+++|-+=|+.|+.
T Consensus 151 a~l~~ies--kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~l-h~k------nPd~~I~~Tfftk~L~s 220 (660)
T COG3972 151 ALLDTIES--KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAEL-HSK------NPDSRIAFTFFTKILAS 220 (660)
T ss_pred HHHHHHHH--HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHH-hcC------CCCceEEEEeehHHHHH
Confidence 35555633 455566778777644445555 778999999998766655443 221 34567999999999999
Q ss_pred HHHHHHHHHHhh-------cCCcceEEEEcCCchHHHH---HHhcCCCcEEEEC-----ChHHHHHHhccCCCCCCceeE
Q 007774 108 QVYEILHKLLHR-------FHWIVPGYVMGGENRSKEK---ARLRKGISILVAT-----PGRLLDHLKHTSSFLHTNLRW 172 (590)
Q Consensus 108 Q~~~~~~~~~~~-------~~~~~~~~~~gg~~~~~~~---~~l~~~~~IlV~T-----p~rl~~~l~~~~~~~~~~l~~ 172 (590)
|+...+.+++-. ++....+.-.||.+..-.. .....-..+-.+- -+-...++...+. ..-+++
T Consensus 221 ~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~--~~~yD~ 298 (660)
T COG3972 221 TMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINN--KKAYDY 298 (660)
T ss_pred HHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhc--cccccE
Confidence 999999888742 2223344455665543222 1111111122221 1122333333222 467899
Q ss_pred EEEechhhhhhcCchHHHHHHHHHh
Q 007774 173 IIFDEADRILELGFGKEIEEILDIL 197 (590)
Q Consensus 173 lVlDEah~ll~~gf~~~l~~il~~l 197 (590)
+.+||++. |-...-.++-.+
T Consensus 299 ilIDE~QD-----FP~~F~~Lcf~~ 318 (660)
T COG3972 299 ILIDESQD-----FPQSFIDLCFMV 318 (660)
T ss_pred EEeccccc-----CCHHHHHHHHHH
Confidence 99999997 444444444443
No 318
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.31 E-value=0.86 Score=47.19 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=36.7
Q ss_pred ceeEEEEechhhhhhc-CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHH
Q 007774 169 NLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVN 230 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~-gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~ 230 (590)
++++|++|.++.+... .....+-.+++.+... ..|+++.|...|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--------------~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--------------GKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--------------CCEEEEEcCCCchhhc
Confidence 6788999999987754 5678888888888763 4588888877776544
No 319
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.29 E-value=0.87 Score=43.38 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=17.1
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~ 80 (590)
+..++|.||-|+|||.. +--+++.
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~ 43 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINE 43 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHH
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHH
Confidence 36789999999999963 3334443
No 320
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.28 E-value=1.4 Score=40.41 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=58.9
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 136 (590)
+=.++.+|++||||...+--+...- -.|.++++..|-..- . +..-.+..-.|-
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~---------~~g~~v~vfkp~iD~----------R---~~~~~V~Sr~G~----- 57 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYK---------EAGMKVLVFKPAIDT----------R---YGVGKVSSRIGL----- 57 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHH---------HcCCeEEEEeccccc----------c---cccceeeeccCC-----
Confidence 3468999999999975444333322 236678998885221 0 111111111111
Q ss_pred HHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 137 ~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
+-.-++|-.+..+.+.+...... .+++++.+|||+- |.+.+-..+..+..
T Consensus 58 ------~~~A~~i~~~~~i~~~i~~~~~~--~~~~~v~IDEaQF-----~~~~~v~~l~~lad 107 (201)
T COG1435 58 ------SSEAVVIPSDTDIFDEIAALHEK--PPVDCVLIDEAQF-----FDEELVYVLNELAD 107 (201)
T ss_pred ------cccceecCChHHHHHHHHhcccC--CCcCEEEEehhHh-----CCHHHHHHHHHHHh
Confidence 11346777777888887653221 1378999999996 44555555555543
No 321
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.22 E-value=2.7 Score=46.55 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.8
Q ss_pred EEEEccCcchHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pi 77 (590)
+|+.|+.|+|||.++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998766644
No 322
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.16 E-value=4.7 Score=43.66 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=98.7
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 28 ~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
++...++..|+...+.. .++..+ ..|-.+.--|=--||| .|++|++..++.. -.|..+-+++.-|--++
T Consensus 178 r~~~~lk~~Fdi~~~s~---~~l~~F-KQkaTVFLVPRRHGKT-Wf~VpiIsllL~s------~~gI~IGYvAHqKhvs~ 246 (668)
T PHA03372 178 RVLEYLLHVFDIEFLSE---SSLNIF-KQKATVFLVPRRHGKT-WFIIPIISFLLKN------IIGISIGYVAHQKHVSQ 246 (668)
T ss_pred HHHHHHHHHcCCcccCH---HHHHHh-hccceEEEecccCCce-ehHHHHHHHHHHh------hcCceEEEEeeHHHHHH
Confidence 44455544455554443 333333 3355666778889999 5778888877662 45788999999999998
Q ss_pred HHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHH----hccCCCCCCceeEEEEechhhhhh
Q 007774 108 QVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHL----KHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 108 Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l----~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
-+++++...+..+-........ ++-.|.+.-||.=-..+ .++....-.++++|++||||-+
T Consensus 247 ~Vf~EI~~~lrrwF~~~~vi~~-------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI-- 311 (668)
T PHA03372 247 FVLKEVEFRCRRMFPRKHTIEN-------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI-- 311 (668)
T ss_pred HHHHHHHHHHhhhcCccceeee-------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc--
Confidence 8888887666544221111110 23356676665431111 1223344467889999999965
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecc
Q 007774 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL 225 (590)
Q Consensus 184 ~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~ 225 (590)
-.+.+..|+..+... ...+|..|.|-
T Consensus 312 --~~~a~~tilgfm~q~--------------~~KiIfISS~N 337 (668)
T PHA03372 312 --KKDAFNTILGFLAQN--------------TTKIIFISSTN 337 (668)
T ss_pred --CHHHHHHhhhhhccc--------------CceEEEEeCCC
Confidence 246778888888753 68888999884
No 323
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.16 E-value=1.1 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=17.8
Q ss_pred CCcEEEEccCcchHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
++.+++.+|||+|||.+....+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999776554433
No 324
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.08 E-value=1.3 Score=47.53 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=33.8
Q ss_pred ccCCCCCHHHHHHHHHhCCCC-CCcHHHHHHHHH------------HhcCCcEEEEccCcchHHHHHHHHHHH
Q 007774 20 FSSLGLHSTLCDQLRERLGFE-APTKVQAQAIPV------------ILSGRHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 20 f~~l~l~~~l~~~l~~~~g~~-~~t~~Q~~~i~~------------il~g~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
....|+++.+...|.+.+.-. ....-....... +-.|+.+.+.+|||+|||......+..
T Consensus 301 L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 301 MDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred HHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345567777777776654221 111111111111 224667899999999999776544433
No 325
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.98 E-value=2.3 Score=41.79 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.2
Q ss_pred CcEEEEccCcchHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
..+++.+++|+|||..+...+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999877654443
No 326
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.97 E-value=1.7 Score=39.49 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=35.6
Q ss_pred CceeEEEEechhhhhhcCch--HHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHh
Q 007774 168 TNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI 235 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~--~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~ 235 (590)
..+++||+||+=-.++.|+- +.+..++..-|. ...+|+..-..|+.+...+..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~---------------~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPG---------------HQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCC---------------CCEEEEECCCCCHHHHHhCce
Confidence 57899999999999888863 455555555543 345555555567666666653
No 327
>PRK05973 replicative DNA helicase; Provisional
Probab=91.97 E-value=0.34 Score=46.56 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=37.4
Q ss_pred HHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 51 PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 51 ~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.-+..|.-++|.|++|+|||...+-.+.+... .|..+++++-- +-..|+.+.+..+
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---------~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMK---------SGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---------cCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 34445677899999999999877666665542 25567777643 3356666666554
No 328
>PRK06904 replicative DNA helicase; Validated
Probab=91.95 E-value=1.5 Score=46.94 Aligned_cols=131 Identities=19% Similarity=0.180 Sum_probs=63.6
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcC-Cc
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGG-EN 133 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg-~~ 133 (590)
.|.=+++.|.||.|||... +-+...... ..+..+++++.- .-..|+...+-.... .+....+..| .-
T Consensus 220 ~G~LiiIaarPg~GKTafa-lnia~~~a~-------~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s---~v~~~~i~~g~~l 287 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFA-MNLCENAAM-------ASEKPVLVFSLE-MPAEQIMMRMLASLS---RVDQTKIRTGQNL 287 (472)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHH-------hcCCeEEEEecc-CCHHHHHHHHHHhhC---CCCHHHhccCCCC
Confidence 3455788999999999644 444443322 124457776543 445555554433321 1111112222 22
Q ss_pred hHHHHH-------HhcCCCcEEEE-----CChHHHHHHhccCCCCCCceeEEEEechhhhhhcCc----hHHHHHHHHHh
Q 007774 134 RSKEKA-------RLRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF----GKEIEEILDIL 197 (590)
Q Consensus 134 ~~~~~~-------~l~~~~~IlV~-----Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf----~~~l~~il~~l 197 (590)
...++. .+...+++.|- |+..+......... ....++++|||=.+.|...++ ...+..|.+.|
T Consensus 288 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~L 366 (472)
T PRK06904 288 DQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR-ENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSL 366 (472)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 223332 23234446553 33333332221100 113588999999987754332 33455565555
Q ss_pred c
Q 007774 198 G 198 (590)
Q Consensus 198 ~ 198 (590)
+
T Consensus 367 K 367 (472)
T PRK06904 367 K 367 (472)
T ss_pred H
Confidence 4
No 329
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.95 E-value=1.3 Score=42.37 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=31.9
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.|..+++.+++|+|||...+..+.+.+.. +..+++++- .+...++.+.+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---------g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---------GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEEEc-cCCHHHHHHHHHH
Confidence 46789999999999997665545444422 345666664 3344555444443
No 330
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.92 E-value=0.97 Score=40.78 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=19.1
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
...+++||||||.|.. .....++..+-.
T Consensus 101 ~~~KviiI~~ad~l~~----~a~NaLLK~LEe 128 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE----EAQNALLKTLEE 128 (162)
T ss_dssp SSSEEEEEETGGGS-H----HHHHHHHHHHHS
T ss_pred CCceEEEeehHhhhhH----HHHHHHHHHhcC
Confidence 4788999999998754 445555555543
No 331
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.91 E-value=3.1 Score=42.02 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCCCcHHHHHHHHHHh----cCC---cEEEEccCcchHHHHHHHHHHHHHh
Q 007774 39 FEAPTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 39 ~~~~t~~Q~~~i~~il----~g~---dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
+..++|||..++..+. .|+ -.++.+|.|+||+..+.. +.+.+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~Ll 51 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVL 51 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHh
Confidence 3568999999987765 333 479999999999976554 344443
No 332
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.83 E-value=8.1 Score=42.25 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 300 ~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
...+..|-.++..+.. .-++-+++|+++-+....+...+...+.. ..+...-.++ +-..-+ -..++
T Consensus 611 ~~~l~~l~~~~~nL~~-~VPgGvV~FfPSy~yL~~v~k~w~~~gil---------~ri~~kK~vF-~E~k~~---~~dvl 676 (821)
T KOG1133|consen 611 PEMIKDLGSSISNLSN-AVPGGVVCFFPSYAYLGQVRKRWEQNGIL---------ARIVGKKKVF-YEPKDT---VEDVL 676 (821)
T ss_pred hHHHHHHHHHHHHHHh-hCCCcEEEEeccHHHHHHHHHHHHhcchH---------HHhhccchhh-ccCccc---HHHHH
Confidence 3445555555555543 33589999999988777777666543210 0001111222 122222 34556
Q ss_pred HHhhc----cCccEEEec--cccccCCCCCC--CcEEEEecCCC
Q 007774 380 GAFKT----EKKALLLST--DVAARGLDFPK--VKCIIQYDSAG 415 (590)
Q Consensus 380 ~~F~~----~~~~vLiaT--dv~~rGlDip~--v~~VI~~d~p~ 415 (590)
+.|.. |...+|+|. .-+++||||.+ ++.||..++|.
T Consensus 677 ~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 677 EGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred HHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCC
Confidence 66643 455677764 67899999975 77888888775
No 333
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.71 E-value=2.1 Score=44.28 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=18.3
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
.++++.||+|+|||.+. -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999654 33444443
No 334
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.66 E-value=1.4 Score=45.57 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=32.3
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
|.-+++.+++|+|||...+..+.... . .+.+++++.-. +-..|+...+..+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a-~--------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA-K--------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 45689999999999976555443332 1 23567887654 4456665555443
No 335
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.39 E-value=1.6 Score=46.68 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.6
Q ss_pred cEEEEccCcchHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAP 76 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~p 76 (590)
.+++.||+|+|||..+.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999776553
No 336
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.21 E-value=0.37 Score=46.62 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=37.9
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|..++|.+++|+|||...+-.+.+.+. .|..+++++ +.+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~---------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 4577999999999999877666666653 256688888 456667777766654
No 337
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.19 E-value=2.9 Score=40.99 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=27.5
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcC
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~P 101 (590)
.|.-++|.+++|+|||...+-.+.+.+. .|.++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~---------~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS---------RGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---------CCCcEEEEEe
Confidence 4567899999999999876665555442 2456788773
No 338
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.16 E-value=0.11 Score=47.55 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=27.8
Q ss_pred hcCCCcEEEECChHHHHHHhccCC--CCCCceeEEEEechhhhhhc
Q 007774 141 LRKGISILVATPGRLLDHLKHTSS--FLHTNLRWIIFDEADRILEL 184 (590)
Q Consensus 141 l~~~~~IlV~Tp~rl~~~l~~~~~--~~~~~l~~lVlDEah~ll~~ 184 (590)
.....+|||+++.-|++-...... +. .+-.+|||||||.|.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHHH
Confidence 334689999999988765433221 22 23468999999998763
No 339
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.08 E-value=0.76 Score=43.20 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=21.0
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhc
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILG 198 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~ 198 (590)
...+.+|+||||.|.+ |-.+.++..++...
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYS 141 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHc
Confidence 4667899999998765 35556666655554
No 340
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.01 E-value=2.5 Score=46.55 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.0
Q ss_pred cEEEEccCcchHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPII 78 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil 78 (590)
.+|+.+|.|+|||.++.+.+-
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999987766443
No 341
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=0.65 Score=48.80 Aligned_cols=54 Identities=26% Similarity=0.451 Sum_probs=32.3
Q ss_pred cCCccCCC---CCHHHHHHHHHhCCCC--CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHH
Q 007774 17 SCSFSSLG---LHSTLCDQLRERLGFE--APTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 17 ~~~f~~l~---l~~~l~~~l~~~~g~~--~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
...|+++| |+.+..+.....|-.. .|--+-+-.|++ =+.+|+.+|+|+||||.+
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H---VKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH---VKGILLYGPPGTGKTLIA 273 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc---eeeEEEECCCCCChhHHH
Confidence 34788885 6777776665433211 122222222222 256899999999999865
No 342
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.98 E-value=1.3 Score=44.86 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=17.4
Q ss_pred EEEEccCcchHHHHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPIINH 80 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pil~~ 80 (590)
+++.+|.|+|||.++...+-..
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHH
Confidence 8999999999998766644443
No 343
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.97 E-value=1.2 Score=48.19 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=20.1
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
...+++||||+|.+.. ..+..++..+..
T Consensus 115 ~~~kVVIIDEad~ls~----~a~naLLk~LEe 142 (504)
T PRK14963 115 GGRKVYILDEAHMMSK----SAFNALLKTLEE 142 (504)
T ss_pred CCCeEEEEECccccCH----HHHHHHHHHHHh
Confidence 5678999999997643 456666666654
No 344
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.92 E-value=2.2 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=16.9
Q ss_pred cEEEEccCcchHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPII 78 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil 78 (590)
.+|+.||.|+|||..+.+.+-
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 579999999999987665433
No 345
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.89 E-value=3.3 Score=42.21 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHhc--CC---cEEEEccCcchHHHHHHHHHHHHHhh
Q 007774 42 PTKVQAQAIPVILS--GR---HVLVNAATGTGKTVAYLAPIINHLQS 83 (590)
Q Consensus 42 ~t~~Q~~~i~~il~--g~---dvlv~a~TGsGKTl~~l~pil~~l~~ 83 (590)
++|||...+..+.. ++ -.++.||.|.||+..+.. +.+.+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 46888888877653 32 578999999999976654 3344443
No 346
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.89 E-value=0.29 Score=49.75 Aligned_cols=43 Identities=19% Similarity=0.399 Sum_probs=28.8
Q ss_pred hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
..+++++++++||||||. ++-.++..+- ...+++.+=-+.||.
T Consensus 158 ~~~~nili~G~tgSGKTT-ll~aL~~~ip---------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTT-FTNAALREIP---------AIERLITVEDAREIV 200 (332)
T ss_pred HcCCcEEEECCCCCCHHH-HHHHHHhhCC---------CCCeEEEecCCCccc
Confidence 357899999999999994 4444555442 234566665666653
No 347
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.84 E-value=2.6 Score=43.46 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=25.7
Q ss_pred EEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 60 lv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
++.++.|+|||......++..+.... .+..++++..+..+...+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~~~~~~~~~~~~~ 46 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIASTYRQARDIFGR 46 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEEESSHHHHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEecCHHHHHHHHHH
Confidence 47789999999998887777765521 12445555344444444333
No 348
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.80 E-value=1.3 Score=52.64 Aligned_cols=80 Identities=11% Similarity=0.133 Sum_probs=65.0
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc-cc
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD-VA 396 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd-v~ 396 (590)
.+.+++|.++|+..+..++..++..... .++.+..++|..+..++.++++...+|..+|+|+|. .+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-------------~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL 714 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-------------WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL 714 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhcc-------------CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH
Confidence 3678999999999999999988764211 146778899999999999999999999999999995 45
Q ss_pred ccCCCCCCCcEEEE
Q 007774 397 ARGLDFPKVKCIIQ 410 (590)
Q Consensus 397 ~rGlDip~v~~VI~ 410 (590)
...+++.++.+||.
T Consensus 715 ~~~v~~~~L~lLVI 728 (1147)
T PRK10689 715 QSDVKWKDLGLLIV 728 (1147)
T ss_pred hCCCCHhhCCEEEE
Confidence 55677778888874
No 349
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.79 E-value=1.2 Score=48.48 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=76.9
Q ss_pred CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 300 ~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
..-+.+++.++... ..+..+.+-++|-=.++.++.-+.+...+ .++.+..+.|.+..+.|.+++
T Consensus 295 GKTvVA~laml~ai---~~G~Q~ALMAPTEILA~QH~~~~~~~l~~-------------~~i~V~lLtG~~kgk~r~~~l 358 (677)
T COG1200 295 GKTVVALLAMLAAI---EAGYQAALMAPTEILAEQHYESLRKWLEP-------------LGIRVALLTGSLKGKARKEIL 358 (677)
T ss_pred CHHHHHHHHHHHHH---HcCCeeEEeccHHHHHHHHHHHHHHHhhh-------------cCCeEEEeecccchhHHHHHH
Confidence 33455555555554 45779999999998888888887765322 178899999999999999999
Q ss_pred HHhhccCccEEEeccc-cccCCCCCCCcEEEEe
Q 007774 380 GAFKTEKKALLLSTDV-AARGLDFPKVKCIIQY 411 (590)
Q Consensus 380 ~~F~~~~~~vLiaTdv-~~rGlDip~v~~VI~~ 411 (590)
+...+|+++|+|.|-. +...++|.++.+||.-
T Consensus 359 ~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiD 391 (677)
T COG1200 359 EQLASGEIDIVVGTHALIQDKVEFHNLGLVIID 391 (677)
T ss_pred HHHhCCCCCEEEEcchhhhcceeecceeEEEEe
Confidence 9999999999999965 5678999999888853
No 350
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.77 E-value=2.7 Score=43.85 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.0
Q ss_pred cEEEEccCcchHHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINH 80 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~ 80 (590)
-+++.+|||+|||....-.+...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999998776655544
No 351
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=90.62 E-value=1.5 Score=45.98 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=51.9
Q ss_pred CCCCCCcHHHHHHHHHH----hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHH
Q 007774 37 LGFEAPTKVQAQAIPVI----LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i~~i----l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 112 (590)
|+|...+|-|-+=...+ -.+...++..|+|+|||.+.+..++........ ...+.++.+-|..=......+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-----~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-----EHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-----ccceEEEecCcchHHHHHHHH
Confidence 67788888887765443 245689999999999999887777665554331 335577777776555555555
Q ss_pred HHHHH
Q 007774 113 LHKLL 117 (590)
Q Consensus 113 ~~~~~ 117 (590)
++.+.
T Consensus 87 l~~l~ 91 (755)
T KOG1131|consen 87 LKRLM 91 (755)
T ss_pred HHHHH
Confidence 55554
No 352
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.62 E-value=1.3 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=17.5
Q ss_pred cEEEEccCcchHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~ 79 (590)
-+|+.++.|+|||.++.+.+-.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3699999999999887765433
No 353
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.43 E-value=0.75 Score=51.33 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=77.8
Q ss_pred EecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHH
Q 007774 296 KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (590)
Q Consensus 296 ~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R 375 (590)
-++.+.|.+..+.++...+ ..+..+||-++-......+...|.... +.++..+|++++..+|
T Consensus 224 GvTGSGKTEvYl~~i~~~L--~~GkqvLvLVPEI~Ltpq~~~rf~~rF----------------g~~v~vlHS~Ls~~er 285 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVL--AQGKQVLVLVPEIALTPQLLARFKARF----------------GAKVAVLHSGLSPGER 285 (730)
T ss_pred CCCCCcHHHHHHHHHHHHH--HcCCEEEEEeccccchHHHHHHHHHHh----------------CCChhhhcccCChHHH
Confidence 4567899999999998887 456899999999888887777776542 5789999999999999
Q ss_pred HHHHHHhhccCccEEEeccccccCCCCCCCcEEE
Q 007774 376 RTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409 (590)
Q Consensus 376 ~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI 409 (590)
.....+...|+.+|+|.|-.+- =.-++++..||
T Consensus 286 ~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 286 YRVWRRARRGEARVVIGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred HHHHHHHhcCCceEEEEechhh-cCchhhccEEE
Confidence 9999999999999999997652 23445677666
No 354
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.38 E-value=0.3 Score=53.34 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=56.3
Q ss_pred HHHhhccCccEEEeccccccCCCCCCCc--------EEEEecCCCChhHHHhhhccccCCCC-CccEEEEeC---ccchH
Q 007774 379 FGAFKTEKKALLLSTDVAARGLDFPKVK--------CIIQYDSAGEATEYVHRVGRTARLGE-RGDSLLFLQ---PVEMD 446 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~~rGlDip~v~--------~VI~~d~p~s~~~yiqr~GRt~R~g~-~g~~i~~l~---~~e~~ 446 (590)
-++|..|+..|-|-+..++-||-+..-. +=|-+.+|||.+.-||..|||.|.++ .+--++|+- ..|..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 3567888888888899999999986433 44568899999999999999999876 455666654 36777
Q ss_pred HHHHHH
Q 007774 447 YLQDLE 452 (590)
Q Consensus 447 ~~~~l~ 452 (590)
|.....
T Consensus 930 FAS~VA 935 (1300)
T KOG1513|consen 930 FASIVA 935 (1300)
T ss_pred HHHHHH
Confidence 765443
No 355
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=0.17 Score=49.74 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.3
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
..|+++.+|||||||+-+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 458999999999999744
No 356
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.32 E-value=0.75 Score=50.49 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.6
Q ss_pred cEEEEccCcchHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPII 78 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil 78 (590)
-+|+.||.|+|||.++.+.+-
T Consensus 39 AyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999977665433
No 357
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.25 E-value=0.8 Score=50.19 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.1
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
-+|+.++.|+|||....+.+
T Consensus 40 A~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999998766633
No 358
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.18 E-value=2.5 Score=48.24 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=33.7
Q ss_pred cccCCccCCCCCHHHHHHHHHhC--CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~--g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
....+|++++-.+...+.+.+.. .+..|.-++... +..++.+++.+|+|+|||...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 35568888876666666664422 222222222211 134578999999999999653
No 359
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.15 E-value=0.91 Score=51.56 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=15.5
Q ss_pred EEEEccCcchHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pi 77 (590)
+|+.||.|+|||.++.+.+
T Consensus 41 yLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998766533
No 360
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=3.4 Score=43.69 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHhCCCCCCcHHHHHHHH----HHhc--------CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCC
Q 007774 22 SLGLHSTLCDQLRERLGFEAPTKVQAQAIP----VILS--------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRID 89 (590)
Q Consensus 22 ~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~----~il~--------g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~ 89 (590)
.+|.+++.++..... |.-...+.=.+.+. .+.+ =..+++.+|.|||||.-+.-.+..
T Consensus 493 AFG~see~l~~~~~~-Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~---------- 561 (744)
T KOG0741|consen 493 AFGISEEDLERFVMN-GMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS---------- 561 (744)
T ss_pred ccCCCHHHHHHHHhC-CceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----------
Confidence 467777777776543 44433333333321 1111 135899999999999544332221
Q ss_pred CCCCeeEEEEcCc
Q 007774 90 RSSGTFALVLVPT 102 (590)
Q Consensus 90 ~~~~~~~lil~Pt 102 (590)
++=+.+=|++|.
T Consensus 562 -S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 -SDFPFVKIISPE 573 (744)
T ss_pred -cCCCeEEEeChH
Confidence 344667777774
No 361
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.09 E-value=2.5 Score=44.32 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=26.1
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEc--CcHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV--PTRELCLQVY 110 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~ 110 (590)
-+++.+++|+|||.+..--+.. +.. .|.++++++ |.|.-|.++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~--------~G~kV~lV~~D~~R~aA~eQL 147 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQR--------KGFKPCLVCADTFRAGAFDQL 147 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH--------CCCCEEEEcCcccchhHHHHH
Confidence 4689999999999765544432 322 244565554 3455444443
No 362
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.03 E-value=3.1 Score=40.14 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=31.0
Q ss_pred hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEc---CcHHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV---PTRELCLQ 108 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~---PtreLa~Q 108 (590)
..|.-++|.|+||+|||...+--+.+.... .+..+++++ |..+++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeCCCCHHHHHHH
Confidence 356678999999999996655545554432 256688888 33444443
No 363
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.99 E-value=6 Score=37.97 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=32.7
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.|.-+++.+++|+|||......+.+.+. .+.+++++.-. +-..++.+.+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~---------~g~~~~y~~~e-~~~~~~~~~~~~ 74 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK---------QGKKVYVITTE-NTSKSYLKQMES 74 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh---------CCCEEEEEEcC-CCHHHHHHHHHH
Confidence 3567899999999999876665555543 25567777654 333444444444
No 364
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.98 E-value=1.4 Score=45.59 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.0
Q ss_pred EEEEccCcchHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAP 76 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~p 76 (590)
+++.||.|+|||..+...
T Consensus 41 ~L~~Gp~G~GKTtla~~l 58 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLL 58 (363)
T ss_pred EEEecCCCCCHHHHHHHH
Confidence 699999999999766553
No 365
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.77 E-value=7.8 Score=42.77 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.3
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
-+|+.||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999987766
No 366
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.72 E-value=1.6 Score=47.51 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=57.2
Q ss_pred EEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc-----cc
Q 007774 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD-----VA 396 (590)
Q Consensus 322 ~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd-----v~ 396 (590)
+||.++|++.+..+++.+..+.... +++.+..+.|+++...+...++ .| .+|||+|+ .+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~------------~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i 165 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNL------------GGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLI 165 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhc------------CCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHH
Confidence 9999999999999999988764321 1567889999998877664444 45 99999997 46
Q ss_pred ccC-CCCCCCcEEEE
Q 007774 397 ARG-LDFPKVKCIIQ 410 (590)
Q Consensus 397 ~rG-lDip~v~~VI~ 410 (590)
.+| +|+..+.++|.
T Consensus 166 ~~~~l~l~~v~~lVl 180 (513)
T COG0513 166 KRGKLDLSGVETLVL 180 (513)
T ss_pred HcCCcchhhcCEEEe
Confidence 666 88888998883
No 367
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.67 E-value=7.2 Score=42.48 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=15.9
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
-+|+.||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999997766533
No 368
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.49 E-value=0.49 Score=48.76 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=19.7
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
.+..+++.+|||||||.. +-.+++.+.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 445789999999999954 444666554
No 369
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.40 E-value=0.87 Score=42.12 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEccCcchHHHHH
Q 007774 41 APTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 41 ~~t~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~ 73 (590)
.+++-|...+.... .|..+++.++||||||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 36777777776655 5789999999999999643
No 370
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.39 E-value=2.5 Score=46.74 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=16.1
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
.+|+.||.|+|||.+..+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999998766543
No 371
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.28 E-value=4.6 Score=40.70 Aligned_cols=18 Identities=56% Similarity=0.750 Sum_probs=15.1
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
.+++.||+|+|||.+.-.
T Consensus 40 ~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALA 57 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999976544
No 372
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.24 E-value=4.7 Score=44.52 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=15.8
Q ss_pred EEEEccCcchHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pi 77 (590)
+|+.|+.|+|||..+.+.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5999999999998776633
No 373
>PRK10436 hypothetical protein; Provisional
Probab=89.09 E-value=1.2 Score=47.38 Aligned_cols=38 Identities=32% Similarity=0.393 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHh--cCCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 43 TKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 43 t~~Q~~~i~~il--~g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
.+-|.+.+..++ .+.-+++.+|||||||.+. ..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 455555665544 3446899999999999754 3355554
No 374
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=89.06 E-value=0.97 Score=41.36 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=24.5
Q ss_pred EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
.++.+|++||||...+- .+..+.. .+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~-~~~~~~~--------~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIR-RIHRYEI--------AGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHH--------TT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHH-HHHHHHh--------CCCeEEEEEecc
Confidence 47889999999965444 4444432 367799998864
No 375
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.04 E-value=3.6 Score=42.32 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=18.7
Q ss_pred CCcEEEEccCcchHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
++.+++.+|||+|||....-.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999776655544
No 376
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.96 E-value=6.6 Score=43.05 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.2
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
-+|+.||.|+|||..+...+
T Consensus 40 A~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999997765543
No 377
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.96 E-value=2.3 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=18.3
Q ss_pred CCcEEEEccCcchHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
++.+++.+|||+|||.+....+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 557899999999999776554443
No 378
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.94 E-value=3 Score=42.19 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCcchHHHHHHHHHHHHHh
Q 007774 42 PTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 42 ~t~~Q~~~i~~il----~g~---dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
++|||+..+..+. .|+ -.++.||.|.||+..+...+ +.+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A-~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA-QWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH-HHHc
Confidence 4788888877665 343 46899999999997665533 4443
No 379
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.91 E-value=2.4 Score=48.33 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=32.1
Q ss_pred cCCccCCCCCHHHHHHHHHhC--CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~--g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
..+|++++..+.+.+.|.+.. .+..+..++... +...+.+++.+|+|+|||+.+-.
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~laka 506 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLAKA 506 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHHHH
Confidence 346777776667766665432 222222222111 12245699999999999975533
No 380
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.90 E-value=0.32 Score=52.30 Aligned_cols=49 Identities=31% Similarity=0.359 Sum_probs=38.3
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.++++.||||||||..+++|.+-. . +..+||.=|--||........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~---------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y---------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c---------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 369999999999999999997632 1 126899999999987777666553
No 381
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=88.88 E-value=2.4 Score=43.68 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=20.1
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
++-+.+.||||.|||.+..-.+....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67889999999999987655544443
No 382
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.86 E-value=5.4 Score=37.27 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=73.1
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEc---CcHHHHHHHHHHHHHHHhhcCCcceEEE---Ec
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV---PTRELCLQVYEILHKLLHRFHWIVPGYV---MG 130 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~---PtreLa~Q~~~~~~~~~~~~~~~~~~~~---~g 130 (590)
.=+++.++-|+|||+-..-.+.-.|. .+.++.+++ |+|+...|+...=-.....+-+-....+ ..
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~---------~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLM---------NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHh---------CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc
Confidence 44799999999999866665665554 356677766 6777777765531111111111111111 11
Q ss_pred CCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCC
Q 007774 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNE 210 (590)
Q Consensus 131 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~ 210 (590)
+.......+ ..+++.+..... ..+-+++|+|-.....-..-...+..++..+.+.+
T Consensus 100 ~~~~~~~~~-------------~~~L~~l~~~~k--~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~--------- 155 (235)
T COG2874 100 PVNWGRRSA-------------RKLLDLLLEFIK--RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLS--------- 155 (235)
T ss_pred ccccChHHH-------------HHHHHHHHhhHH--hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHH---------
Confidence 111111110 122333322111 23556799999988776554556666666665532
Q ss_pred ccccCceEEEEeeccc
Q 007774 211 VSNVKRQNLLLSATLN 226 (590)
Q Consensus 211 ~~~~~~q~il~SAT~~ 226 (590)
..-.++++|+-+.
T Consensus 156 ---d~gKvIilTvhp~ 168 (235)
T COG2874 156 ---DLGKVIILTVHPS 168 (235)
T ss_pred ---hCCCEEEEEeChh
Confidence 2567899998764
No 383
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.83 E-value=1.3 Score=42.71 Aligned_cols=88 Identities=9% Similarity=0.203 Sum_probs=65.9
Q ss_pred CcceEeccCCCChHHHHHHHHHhhccC----ccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhcc--ccCCCCC
Q 007774 360 RCKTFRLHGNMKQEDRRTTFGAFKTEK----KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR--TARLGER 433 (590)
Q Consensus 360 ~~~v~~lhg~~~~~~R~~~~~~F~~~~----~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GR--t~R~g~~ 433 (590)
++.+..++++.+... -.|.++. ..|+|+-+.++||+-++++.+......+...+++.|+ || .-|.|-.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCcccc
Confidence 378899998765533 3444443 7899999999999999999999999999999998887 44 3455556
Q ss_pred ccEEEEeCccchHHHHHHHH
Q 007774 434 GDSLLFLQPVEMDYLQDLEK 453 (590)
Q Consensus 434 g~~i~~l~~~e~~~~~~l~~ 453 (590)
+.|-+++.+.-...+..+.+
T Consensus 184 dl~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred cceEEecCHHHHHHHHHHHH
Confidence 77888887765555555543
No 384
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.75 E-value=5.4 Score=45.51 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
..++++.+|+|+|||...-.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 35899999999999976544
No 385
>PRK13764 ATPase; Provisional
Probab=88.62 E-value=0.82 Score=50.01 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=20.1
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
.++++++.++||||||. ++-.++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 46789999999999995 4444555553
No 386
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.53 E-value=5 Score=41.90 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.5
Q ss_pred CcEEEEccCcchHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pi 77 (590)
..+|+.||.|+|||..+...+
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA 57 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFA 57 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 358999999999997665533
No 387
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.44 E-value=0.6 Score=47.99 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=19.8
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
.+.-+++.+|||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4668999999999999644 44555543
No 388
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.33 E-value=6.4 Score=43.71 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=16.3
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
.+|+.||.|+|||..+...+
T Consensus 40 a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred eEEEECCCCCChHHHHHHHH
Confidence 57999999999998765543
No 389
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.28 E-value=0.76 Score=48.40 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHhcCC--cEEEEccCcchHHHHHHHHHHHHHh
Q 007774 42 PTKVQAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~--dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
+++.|...+..++... =+|+.+|||||||.+. ..++..+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln 283 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELN 283 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhc
Confidence 4677777777776543 4799999999999654 34555543
No 390
>PRK10867 signal recognition particle protein; Provisional
Probab=88.25 E-value=4.4 Score=42.74 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.8
Q ss_pred cEEEEccCcchHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~ 79 (590)
-+++.+++|||||.+..-.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999876554443
No 391
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=88.25 E-value=2.5 Score=41.71 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=17.2
Q ss_pred CcEEEEccCcchHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
+-+++.+++|+|||.+..-.+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34678899999999876655543
No 392
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=88.24 E-value=3.3 Score=38.63 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=53.2
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc--
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-- 395 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv-- 395 (590)
.+.++||.+++.+.+......+...... .+..+..++|+.+..++...+. +...|+|||.-
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l 130 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKH-------------TNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRL 130 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcc-------------CCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHH
Confidence 4568999999999999888877665321 2567788999988766554433 56789999952
Q ss_pred ---cccC-CCCCCCcEEEE
Q 007774 396 ---AARG-LDFPKVKCIIQ 410 (590)
Q Consensus 396 ---~~rG-lDip~v~~VI~ 410 (590)
+..+ .++++++++|.
T Consensus 131 ~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 131 LDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred HHHHHcCCCChhhCCEEEE
Confidence 2233 56667777763
No 393
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.21 E-value=4.5 Score=42.61 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=17.3
Q ss_pred cEEEEccCcchHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~ 79 (590)
-+++.+++|+|||.+..--+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999876655544
No 394
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.08 E-value=0.38 Score=47.51 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=29.6
Q ss_pred hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL 105 (590)
..+.++++.|+||||||... -.++..+.. ...+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~--------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPP--------EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHT--------TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhccc--------cccceEEeccccce
Confidence 35679999999999999544 445555433 13567777777776
No 395
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.04 E-value=1.8 Score=49.62 Aligned_cols=43 Identities=28% Similarity=0.483 Sum_probs=24.6
Q ss_pred CChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHh
Q 007774 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (590)
Q Consensus 151 Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l 197 (590)
.||++.+.+..... .-.+++|||+|.+.....++....++..+
T Consensus 400 ~~g~i~~~l~~~~~----~~~villDEidk~~~~~~~~~~~aLl~~l 442 (775)
T TIGR00763 400 MPGRIIQGLKKAKT----KNPLFLLDEIDKIGSSFRGDPASALLEVL 442 (775)
T ss_pred CCchHHHHHHHhCc----CCCEEEEechhhcCCccCCCHHHHHHHhc
Confidence 57777776654321 11379999999987532223334444444
No 396
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.01 E-value=0.3 Score=51.07 Aligned_cols=47 Identities=32% Similarity=0.282 Sum_probs=36.3
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
++++.|+||||||.++++|-+-. -+..+||+=|.-|+........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~-----------~~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT-----------WPGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc-----------CCCCEEEEccchhHHHHHHHHHHH
Confidence 47899999999999999886542 134689999999998766655543
No 397
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=87.99 E-value=0.45 Score=50.60 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=25.7
Q ss_pred CCceeEEEEechhhhhhcCchHHHHHHHHHhc
Q 007774 167 HTNLRWIIFDEADRILELGFGKEIEEILDILG 198 (590)
Q Consensus 167 ~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~ 198 (590)
...-++.|+||+-..++.+-+..+..+++...
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 34667899999999998888888888877663
No 398
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.99 E-value=1.1 Score=44.05 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=28.0
Q ss_pred HhCCCCCCcHHHHHHHHHHhc--CCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 35 ERLGFEAPTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 35 ~~~g~~~~t~~Q~~~i~~il~--g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
+.+|+ .+-|.+.+..++. +..+++.++||||||... -.++..+
T Consensus 60 ~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 60 EKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 34564 4667777765553 346899999999999644 3344444
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.98 E-value=2.1 Score=44.85 Aligned_cols=91 Identities=16% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc-HHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT-RELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt-reLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
|.-+.+.+|||+|||......+-...... ......++.+.+ |.=+.++ +..+...++ +...........
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~------~~~~v~~i~~d~~rigalEQ---L~~~a~ilG-vp~~~v~~~~dl 260 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH------GADKVALLTTDSYRIGGHEQ---LRIYGKLLG-VSVRSIKDIADL 260 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEecCCcchhHHHH---HHHHHHHcC-CceecCCCHHHH
Confidence 55689999999999987655443332221 112335566655 3222222 333333222 111111112222
Q ss_pred HHHHHHhcCCCcEEEECChHHH
Q 007774 135 SKEKARLRKGISILVATPGRLL 156 (590)
Q Consensus 135 ~~~~~~l~~~~~IlV~Tp~rl~ 156 (590)
......+...-.|+|-|+|+..
T Consensus 261 ~~al~~l~~~d~VLIDTaGrsq 282 (420)
T PRK14721 261 QLMLHELRGKHMVLIDTVGMSQ 282 (420)
T ss_pred HHHHHHhcCCCEEEecCCCCCc
Confidence 2223444445668999998763
No 400
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.86 E-value=1.4 Score=48.31 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.6
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
.+|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999998876644
No 401
>PRK13695 putative NTPase; Provisional
Probab=87.81 E-value=2.7 Score=38.26 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=16.8
Q ss_pred cEEEEccCcchHHHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
.+++.+++|+|||..... ++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~-i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK-IAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHH
Confidence 478999999999975543 44444
No 402
>PF12846 AAA_10: AAA-like domain
Probab=87.77 E-value=0.86 Score=45.48 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=30.0
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
+.++++.|+||||||.... .++..+.. .|..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~--------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR--------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH--------cCCCEEEEcCCchHHH
Confidence 3578999999999997766 44444433 3566888877766544
No 403
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.68 E-value=3.6 Score=42.97 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=15.7
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
.+.+++.||+|+|||+.+-
T Consensus 165 p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCceEEECCCCCChHHHHH
Confidence 3579999999999997543
No 404
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.55 E-value=0.83 Score=42.77 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=16.2
Q ss_pred EEEEccCcchHHHHHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pil~~l 81 (590)
+++.+|||||||... ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 789999999999654 3344444
No 405
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=87.51 E-value=0.59 Score=44.77 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=34.4
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|..+++.+++|||||.-.+-.+.+.+.+ .|..+++++-. +-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~--------~ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN--------FGEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH--------HT--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh--------cCCcEEEEEec-CCHHHHHHHHHHc
Confidence 45679999999999998777666666643 14557887743 4445555555543
No 406
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.51 E-value=3.1 Score=42.32 Aligned_cols=57 Identities=26% Similarity=0.506 Sum_probs=34.5
Q ss_pred cCCccCCCCCHHHHHHHHHhC-------CCCCC-------cHHHHHHH-HHH----hcC-----CcEEEEccCcchHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERL-------GFEAP-------TKVQAQAI-PVI----LSG-----RHVLVNAATGTGKTVA 72 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~-------g~~~~-------t~~Q~~~i-~~i----l~g-----~dvlv~a~TGsGKTl~ 72 (590)
...|+.++.+..++..|...+ .++.. +-.++.++ |.+ ..| +.+|+.+|+|+|||+.
T Consensus 182 ~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 182 DKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred cCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHH
Confidence 347888888888888885421 11111 11222222 332 233 6799999999999974
Q ss_pred H
Q 007774 73 Y 73 (590)
Q Consensus 73 ~ 73 (590)
+
T Consensus 262 A 262 (491)
T KOG0738|consen 262 A 262 (491)
T ss_pred H
Confidence 3
No 407
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=87.37 E-value=1.2 Score=51.14 Aligned_cols=56 Identities=32% Similarity=0.360 Sum_probs=36.8
Q ss_pred cccCCccCCCCCHHHHHHHHHh--CCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRER--LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~--~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
-....|++.|..+.+...|++- +.+.+|.-+|.-.| -.-+.++..+|.|+|||+.+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i---tpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI---TPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc---CCCcceeecCCCCCchhHHH
Confidence 3445899999888888888542 12223333332222 23467999999999999864
No 408
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.30 E-value=5.3 Score=40.54 Aligned_cols=35 Identities=20% Similarity=0.077 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHhc--CC---cEEEEccCcchHHHHHHHH
Q 007774 42 PTKVQAQAIPVILS--GR---HVLVNAATGTGKTVAYLAP 76 (590)
Q Consensus 42 ~t~~Q~~~i~~il~--g~---dvlv~a~TGsGKTl~~l~p 76 (590)
++|||+..+..+.. ++ -.++.||.|+|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 46888888877763 33 4789999999999766553
No 409
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.28 E-value=10 Score=39.22 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=29.5
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
.+.+|+++--++.+.+.+.+.+.-..+ ...+++.||+|+|||..... +...+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~~~-------------~~~~L~~G~~G~GKt~~a~~-la~~l 63 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENNHL-------------AQALLFCGPRGVGKTTCARI-LARKI 63 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcCCC-------------CeEEEEECCCCCCHHHHHHH-HHHHh
Confidence 345666665566655555432110000 13689999999999965544 34443
No 410
>PF14516 AAA_35: AAA-like domain
Probab=87.19 E-value=1.4 Score=45.04 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhc-CCcEEEEccCcchHHHHHHHHHHHHHhh
Q 007774 44 KVQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQS 83 (590)
Q Consensus 44 ~~Q~~~i~~il~-g~dvlv~a~TGsGKTl~~l~pil~~l~~ 83 (590)
|+.++++..+.+ |.-+.|.||=.+|||- .+.-+.+.+..
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTS-ll~~l~~~l~~ 57 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTS-LLLRLLERLQQ 57 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHH-HHHHHHHHHHH
Confidence 488899989887 9999999999999995 44556666644
No 411
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.17 E-value=4 Score=42.80 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=16.4
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
.+|+.||.|+|||.++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37899999999998776643
No 412
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=12 Score=36.83 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=34.5
Q ss_pred HHHhcCC-----cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 51 PVILSGR-----HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 51 ~~il~g~-----dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
|++..|+ .+|+.+|+|+||+.- .-++.. ......+-+.+..|+..|.-+-.++.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYL--AKAVAT-----------EAnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYL--AKAVAT-----------EANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHH--HHHHHh-----------hcCCceEEeehHHHHHHHhccHHHHH
Confidence 5566664 489999999999953 322221 11246777777788777665555543
No 413
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.16 E-value=1.4 Score=47.41 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhcC-C-cEEEEccCcchHHHHHHHHHHHHH
Q 007774 43 TKVQAQAIPVILSG-R-HVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 43 t~~Q~~~i~~il~g-~-dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
.+-|.+.+..++.. + -+++.+|||||||.+.. .++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~-a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY-AALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH-HHHhcc
Confidence 46666676666543 2 47899999999996543 344444
No 414
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.15 E-value=4.6 Score=46.83 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.9
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
.++++.+|+|+|||...-.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4899999999999976543
No 415
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=87.07 E-value=3.8 Score=38.83 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=25.4
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEc
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~ 100 (590)
|.-+++.+++|||||...+..+.+... .+..++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~---------~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG---------QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---------cCCeEEEEE
Confidence 455899999999999876665555432 245677773
No 416
>PRK04328 hypothetical protein; Provisional
Probab=87.07 E-value=1.1 Score=43.69 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=35.7
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|.-+++.+++|+|||...+-.+.+.+.. |..+++++ +.+-..++.+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---------ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 45678999999999997766666665532 45577776 445556666666554
No 417
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=87.03 E-value=0.42 Score=52.51 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=40.5
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
..+++.||||||||..+++|.+-.. +..+||+=|--|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4689999999999999999987642 245899999999998888777664
No 418
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.03 E-value=2.3 Score=44.96 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=25.3
Q ss_pred hcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEc
Q 007774 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~ 100 (590)
..|.=+++.|+||+|||...+-.+...... .+..+++++
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fS 230 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFS 230 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEE
Confidence 345667999999999996555444343222 245577776
No 419
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.93 E-value=1.3 Score=44.62 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=29.0
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
|+-+.|.+|+|||||...+..+.+... .+..++++..-..+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~---------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK---------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEcccchhHH
Confidence 456899999999999766655555432 2566777766544443
No 420
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.83 E-value=0.38 Score=46.23 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=11.6
Q ss_pred EEEEccCcchHHH
Q 007774 59 VLVNAATGTGKTV 71 (590)
Q Consensus 59 vlv~a~TGsGKTl 71 (590)
++|.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4789999999996
No 421
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.82 E-value=6.9 Score=45.44 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.9
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
.+.++.||+|+|||...-.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5899999999999976543
No 422
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.77 E-value=1.7 Score=44.23 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=15.8
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
..+++.+|+|+|||.....
T Consensus 52 ~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 4799999999999976543
No 423
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=86.51 E-value=3.3 Score=38.20 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=19.7
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
...+++||||+|++.. .....++..+..
T Consensus 95 ~~~kviiide~~~l~~----~~~~~Ll~~le~ 122 (188)
T TIGR00678 95 SGRRVVIIEDAERMNE----AAANALLKTLEE 122 (188)
T ss_pred CCeEEEEEechhhhCH----HHHHHHHHHhcC
Confidence 5678999999999754 344556666643
No 424
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=86.39 E-value=0.84 Score=47.64 Aligned_cols=52 Identities=29% Similarity=0.537 Sum_probs=33.6
Q ss_pred HHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 51 PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 51 ~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
|.-...+++++.|.||||||. ++.+++..+.. .+.++||.=|.-+.....++
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~--------~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQ-AIRHLLDQIRA--------RGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHH--------TT-EEEEEEETTHHHHHH--
T ss_pred ccchhhCcEEEECCCCCCHHH-HHHHHHHHHHH--------cCCEEEEEECCchHHHHhcC
Confidence 344567899999999999996 55667766654 35678888888776544333
No 425
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.36 E-value=3.2 Score=46.43 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=36.2
Q ss_pred eeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccc
Q 007774 170 LRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE 227 (590)
Q Consensus 170 l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~ 227 (590)
-=+||+|.-|++-+......+..++++.|. ..+.++.|-+-|.
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~---------------~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPE---------------NLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCC---------------CeEEEEEeccCCC
Confidence 348999999999999899999999999986 6777777777553
No 426
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.17 E-value=14 Score=40.77 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.0
Q ss_pred EEEEccCcchHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pi 77 (590)
+|+.||.|+|||.++.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998776644
No 427
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.11 E-value=0.69 Score=48.74 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=34.4
Q ss_pred HHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 50 IPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 50 i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
+|.-...+++++.|+||||||.. +..++..+.. .+.+++|+=|..++..
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~--------~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA--------RGDRAIIYDPNGGFVS 84 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh--------cCCCEEEEeCCcchhH
Confidence 44445567999999999999975 4444444433 2456899999988654
No 428
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=86.09 E-value=3 Score=44.74 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=55.4
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc----
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD---- 394 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd---- 394 (590)
...++|.++|++.+..+++.++.+... .++..+..++|+.+...+...+. ....|+|||+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~------------~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~ 135 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARF------------IPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRIL 135 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh------------CCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHH
Confidence 347999999999999988887765211 23677888999998866554443 5678999994
Q ss_pred -cccc-CCCCCCCcEEEE
Q 007774 395 -VAAR-GLDFPKVKCIIQ 410 (590)
Q Consensus 395 -v~~r-GlDip~v~~VI~ 410 (590)
.+.+ .+++.++++||.
T Consensus 136 ~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 136 DHLRKGTLDLDALNTLVL 153 (460)
T ss_pred HHHHcCCccHHHCCEEEE
Confidence 3333 477888888874
No 429
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.08 E-value=11 Score=40.50 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.1
Q ss_pred EEEEccCcchHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pi 77 (590)
.++.||.|+|||.++.+-+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999997665533
No 430
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.99 E-value=9.8 Score=42.18 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=20.3
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
...+++||||+|.|.. .....++..+..
T Consensus 126 ~~~KVvIIdEad~Lt~----~a~naLLK~LEe 153 (620)
T PRK14954 126 GRYRVYIIDEVHMLST----AAFNAFLKTLEE 153 (620)
T ss_pred CCCEEEEEeChhhcCH----HHHHHHHHHHhC
Confidence 5678999999999754 345566666654
No 431
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=85.98 E-value=3.2 Score=41.35 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=67.3
Q ss_pred CCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCc-hHHHHHHhcCC-CcEEEECChHHHHHHhccCCCCCC
Q 007774 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGEN-RSKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 91 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~-~~~~~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
..|..++|.+|+.+-.+|.+..+++- ++...++.+...+. +......++.| .+|+|+|. .|. ..+.+.
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~---~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILE--RGVTfp 372 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKK---LPKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILE--RGVTFP 372 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhh---CCccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhh--cccccc
Confidence 45677999999999999999999665 34455555554443 44445677766 88999993 333 456778
Q ss_pred ceeEEEEechhhhhhcCchHHHHHHHHHhc
Q 007774 169 NLRWIIFDEADRILELGFGKEIEEILDILG 198 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~gf~~~l~~il~~l~ 198 (590)
+++..|++--|++.. +..+-.|-.+.-
T Consensus 373 ~vdV~Vlgaeh~vfT---esaLVQIaGRvG 399 (441)
T COG4098 373 NVDVFVLGAEHRVFT---ESALVQIAGRVG 399 (441)
T ss_pred cceEEEecCCccccc---HHHHHHHhhhcc
Confidence 999999999998754 455555555554
No 432
>PRK09354 recA recombinase A; Provisional
Probab=85.96 E-value=2.8 Score=42.71 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=31.0
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
|+-+.|.+|+|||||...+..+.+... .|..++++..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~---------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK---------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEECCccchHH
Confidence 456789999999999877666655542 3566888887665553
No 433
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=85.86 E-value=10 Score=38.23 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=28.7
Q ss_pred CCcHHHHHHHHHHh----cCC---cEEEEccCcchHHHHHHHHHHHHHh
Q 007774 41 APTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~g~---dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
.++|||...+..+. .|+ -.++.||.|.||+..+.. +.+.+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHc
Confidence 46788888876665 343 479999999999965544 444443
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=85.80 E-value=1.2 Score=44.85 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCcchHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVA 72 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~ 72 (590)
..+.++++.++||||||..
T Consensus 142 ~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 3678999999999999963
No 435
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.73 E-value=6.6 Score=42.73 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=15.7
Q ss_pred EEEEccCcchHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pi 77 (590)
+|+.||.|+|||..+.+.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998766544
No 436
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.64 E-value=0.76 Score=45.16 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=21.9
Q ss_pred HHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 48 QAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 48 ~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
+++..+..|+++++.+++|+|||..+..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3444556789999999999999986644
No 437
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.54 E-value=6.5 Score=42.03 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=77.6
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc----
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD---- 394 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd---- 394 (590)
...+||-++|++.+..+...+..+.... .+...++.|+.+...+.+-++ ..++|+|+|+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~-------------~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~ 227 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSL-------------RLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLI 227 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCC-------------CccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHH
Confidence 4579999999999999998887764332 456888999998776655543 2468999985
Q ss_pred -ccccC-CCCCCCcEEE--------EecCCCChhHHHhhhccccCCCCCccEEEE--eCccchHHH
Q 007774 395 -VAARG-LDFPKVKCII--------QYDSAGEATEYVHRVGRTARLGERGDSLLF--LQPVEMDYL 448 (590)
Q Consensus 395 -v~~rG-lDip~v~~VI--------~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~--l~~~e~~~~ 448 (590)
.+..| +|+.+|+++| ..+.-..+...++.++|..| ..++| .-|.+...+
T Consensus 228 d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r-----Qtlm~saTwp~~v~~l 288 (519)
T KOG0331|consen 228 DLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR-----QTLMFSATWPKEVRQL 288 (519)
T ss_pred HHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc-----cEEEEeeeccHHHHHH
Confidence 56666 6888888888 44555678888888888877 33443 345655443
No 438
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=85.48 E-value=1.5 Score=52.39 Aligned_cols=61 Identities=28% Similarity=0.344 Sum_probs=47.8
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
.+.+++|.|..|||||.+-..-++..|....+ -.-..+|+|+.|+.-+..+...+.+-+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~----~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGP----LDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCC----CChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 46789999999999999988888888876320 13456999999999998888877665543
No 439
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.46 E-value=1.4 Score=44.90 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=39.6
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHh-cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH
Q 007774 30 CDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (590)
Q Consensus 30 ~~~l~~~~g~~~~t~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL 105 (590)
+..+. ..|+ +++.+...+..+. .++++++.++||||||... -.++..+. ...+.+++--+.||
T Consensus 154 l~~l~-~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~---------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELV-ASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVA---------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHH-HcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCC---------CCCcEEEECCccee
Confidence 44443 2354 4566666665554 5679999999999999533 33333331 23457777777777
No 440
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=85.29 E-value=8.4 Score=39.80 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=18.1
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhh
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~ 83 (590)
-.|+.||.|+||+..+.. +...+..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhC
Confidence 489999999999976554 4444443
No 441
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.29 E-value=1.3 Score=45.32 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=26.6
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL 105 (590)
.+..+++.+|||||||... -.++..+.. ..+.+++.+--..|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~-------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK-------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc-------CCCCEEEEEcCChhh
Confidence 3567999999999999654 334444422 123456666555554
No 442
>PRK08840 replicative DNA helicase; Provisional
Probab=85.28 E-value=6.2 Score=42.20 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=62.1
Q ss_pred HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCC
Q 007774 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGE 132 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~ 132 (590)
+..|.=+++.|.||.|||...+- +...... ..+..+++++.- .-..|+...+-... ..+...-+..|.
T Consensus 214 ~~~g~LiviaarPg~GKTafaln-ia~~~a~-------~~~~~v~~fSlE-Ms~~ql~~Rlla~~---s~v~~~~i~~~~ 281 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMN-LCENAAM-------DQDKPVLIFSLE-MPAEQLMMRMLASL---SRVDQTKIRTGQ 281 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHH-HHHHHHH-------hCCCeEEEEecc-CCHHHHHHHHHHhh---CCCCHHHHhcCC
Confidence 33455678899999999965543 3333321 124456776543 33445544433221 111111122222
Q ss_pred chHHHHHH-------hcCCCcEEEE-CCh----HHHHHHhccCCCCCCceeEEEEechhhhhhcC----chHHHHHHHHH
Q 007774 133 NRSKEKAR-------LRKGISILVA-TPG----RLLDHLKHTSSFLHTNLRWIIFDEADRILELG----FGKEIEEILDI 196 (590)
Q Consensus 133 ~~~~~~~~-------l~~~~~IlV~-Tp~----rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g----f~~~l~~il~~ 196 (590)
-...++.+ +....++.|- +|+ .+......... ....+++||||=.+.|...+ ....+..|.+.
T Consensus 282 l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~-~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~ 360 (464)
T PRK08840 282 LDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAR-EHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRS 360 (464)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHH
Confidence 22333332 2223345553 333 23222211111 11258899999999774222 22345555555
Q ss_pred hc
Q 007774 197 LG 198 (590)
Q Consensus 197 l~ 198 (590)
|+
T Consensus 361 LK 362 (464)
T PRK08840 361 LK 362 (464)
T ss_pred HH
Confidence 54
No 443
>PRK06321 replicative DNA helicase; Provisional
Probab=85.27 E-value=8.2 Score=41.38 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=61.3
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~ 135 (590)
|.=++|.|.||.|||...+- +...+.. ..+..+++++. -.-..|+.+.+-... ..+...-+..|.-..
T Consensus 226 G~LiiiaarPgmGKTafal~-ia~~~a~-------~~g~~v~~fSL-EMs~~ql~~Rlla~~---s~v~~~~i~~~~l~~ 293 (472)
T PRK06321 226 SNLMILAARPAMGKTALALN-IAENFCF-------QNRLPVGIFSL-EMTVDQLIHRIICSR---SEVESKKISVGDLSG 293 (472)
T ss_pred CcEEEEEeCCCCChHHHHHH-HHHHHHH-------hcCCeEEEEec-cCCHHHHHHHHHHhh---cCCCHHHhhcCCCCH
Confidence 34468899999999965444 4444321 12344666653 233444444432221 112221222232222
Q ss_pred HHHH-------HhcCCCcEEEE-CCh----HHHHHHhccCCCCCCceeEEEEechhhhhhcC-------chHHHHHHHHH
Q 007774 136 KEKA-------RLRKGISILVA-TPG----RLLDHLKHTSSFLHTNLRWIIFDEADRILELG-------FGKEIEEILDI 196 (590)
Q Consensus 136 ~~~~-------~l~~~~~IlV~-Tp~----rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g-------f~~~l~~il~~ 196 (590)
.++. .+.. ..+.|- +|+ .+...+..... -..+++||||=.+.|...+ ....+..|.+.
T Consensus 294 ~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~--~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~ 370 (472)
T PRK06321 294 RDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKE--SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRM 370 (472)
T ss_pred HHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHH--hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHH
Confidence 3332 2223 345554 343 33333322111 1358899999999775322 23455566655
Q ss_pred hc
Q 007774 197 LG 198 (590)
Q Consensus 197 l~ 198 (590)
|+
T Consensus 371 LK 372 (472)
T PRK06321 371 LK 372 (472)
T ss_pred HH
Confidence 54
No 444
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=85.26 E-value=4.6 Score=42.88 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=55.3
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc---
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV--- 395 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv--- 395 (590)
..++||.++|.+.+..+++.+..+.. ..+..+..++|+.+...+...+ .+..+|||+|.-
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~-------------~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~ 135 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAK-------------HTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLL 135 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHc-------------cCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHH
Confidence 35899999999999988887766532 1267889999999887665544 246789999962
Q ss_pred ---cccCCCCCCCcEEEE
Q 007774 396 ---AARGLDFPKVKCIIQ 410 (590)
Q Consensus 396 ---~~rGlDip~v~~VI~ 410 (590)
....+++.++++||.
T Consensus 136 ~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 136 QYIKEENFDCRAVETLIL 153 (434)
T ss_pred HHHHcCCcCcccCCEEEE
Confidence 234567788888774
No 445
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=85.22 E-value=4.2 Score=41.99 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHh---cCCcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 42 PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 42 ~t~~Q~~~i~~il---~g~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
+.++=.++|..+. .|+..+|.||.|+|||.. +.-+...+.
T Consensus 152 ~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~ 194 (416)
T PRK09376 152 PEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSIT 194 (416)
T ss_pred CcccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHH
Confidence 3445556665554 688999999999999943 333444443
No 446
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=85.16 E-value=12 Score=38.41 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=18.0
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhh
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~ 83 (590)
-+++.+|.|+|||..+.. +...+..
T Consensus 47 a~L~~G~~G~GKttlA~~-lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFH-LANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 489999999999976544 4444443
No 447
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=84.97 E-value=3.7 Score=40.19 Aligned_cols=131 Identities=18% Similarity=0.122 Sum_probs=65.7
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|.=+++.|.||.|||...+-.+.+.... .+..+++++.- .-..++...+-....... ..-+..|.-.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~SlE-m~~~~l~~R~la~~s~v~---~~~i~~g~l~ 85 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSLE-MSEEELAARLLARLSGVP---YNKIRSGDLS 85 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEESS-S-HHHHHHHHHHHHHTST---HHHHHCCGCH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcCC-CCHHHHHHHHHHHhhcch---hhhhhccccC
Confidence 34557999999999997666655555543 24668888753 112223332222221111 1111112222
Q ss_pred HHHHH-------HhcCCCcEEEECCh----HHHHHHhccCCCCCCceeEEEEechhhhhhc----CchHHHHHHHHHhc
Q 007774 135 SKEKA-------RLRKGISILVATPG----RLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILDILG 198 (590)
Q Consensus 135 ~~~~~-------~l~~~~~IlV~Tp~----rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~----gf~~~l~~il~~l~ 198 (590)
..++. .+....-.+..+|+ .+.+.+....... ..+++||||=.|.|-.. +....+..+...|+
T Consensus 86 ~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~-~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk 163 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG-KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELK 163 (259)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS-TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc-cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 22222 23333334455554 3433333211111 58899999999987663 34455656555444
No 448
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.91 E-value=12 Score=43.51 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=21.2
Q ss_pred HHHHHHHHh----c--CCcEEEEccCcchHHHHHHH
Q 007774 46 QAQAIPVIL----S--GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 46 Q~~~i~~il----~--g~dvlv~a~TGsGKTl~~l~ 75 (590)
|..-|..+. . ..+.++.+|+|+|||...-.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 555555543 2 34899999999999975533
No 449
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.88 E-value=4 Score=47.16 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=14.5
Q ss_pred EEEEccCcchHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLA 75 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~ 75 (590)
+++.+|||+|||..+-.
T Consensus 599 ~lf~Gp~GvGKT~lA~~ 615 (852)
T TIGR03345 599 FLLVGPSGVGKTETALA 615 (852)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999976543
No 450
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=84.85 E-value=5.5 Score=39.18 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=18.1
Q ss_pred HHHHHHhcC---CcEEEEccCcchHHHH
Q 007774 48 QAIPVILSG---RHVLVNAATGTGKTVA 72 (590)
Q Consensus 48 ~~i~~il~g---~dvlv~a~TGsGKTl~ 72 (590)
..++.+... +++++.+|+|||||..
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 335555533 5789999999999953
No 451
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.81 E-value=2 Score=43.25 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH
Q 007774 41 APTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (590)
Q Consensus 41 ~~t~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL 105 (590)
.+++.|..-+..+. .+++++++++||||||. ++.+++..+- ...+.+.+=-|.|+
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip---------~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIP---------PEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCC---------chhcEEEEeccccc
Confidence 46777766665544 67899999999999994 4455554432 23446666666655
No 452
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=84.77 E-value=2.3 Score=43.32 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCcchHHHHHHHHHHHHHh
Q 007774 42 PTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 42 ~t~~Q~~~i~~il----~g~---dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
++|||+..+..+. .|+ -.++.||.|+||+..+... .+.+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~-A~~Ll 49 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL-SRWLM 49 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH-HHHHc
Confidence 6788888887765 333 4689999999999766553 44443
No 453
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=84.74 E-value=5.9 Score=40.82 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=31.9
Q ss_pred ceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccc
Q 007774 169 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE 227 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~ 227 (590)
...+|.|||.| +-|.+-.-.+..++..+-.. ...+|..|-+.|+
T Consensus 127 ~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~--------------gvvlVaTSN~~P~ 170 (362)
T PF03969_consen 127 ESRLLCFDEFQ-VTDIADAMILKRLFEALFKR--------------GVVLVATSNRPPE 170 (362)
T ss_pred cCCEEEEeeee-ccchhHHHHHHHHHHHHHHC--------------CCEEEecCCCChH
Confidence 56689999999 66766677778888887643 4566666666664
No 454
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=84.68 E-value=7.7 Score=43.51 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=16.0
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
-+|+.||.|+|||.++.+.+
T Consensus 42 AYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 36899999999998775543
No 455
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=84.57 E-value=4.3 Score=40.92 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=29.0
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
..++++|+|+|||-.+-+.+.. . +...-+.+=++-|..-...+.+.+++
T Consensus 164 SmIlWGppG~GKTtlArlia~t-----s----k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAST-----S----KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhh-----c----CCCceEEEEEeccccchHHHHHHHHH
Confidence 6899999999999644332211 1 12234455566666555555555554
No 456
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=84.34 E-value=1.9 Score=42.21 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=36.7
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|+.++|.+++|||||...+-.+.+.+. .|..+++++- .|...++.+.+..+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~---------~ge~vlyvs~-~e~~~~l~~~~~~~ 73 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAR---------EGEPVLYVST-EESPEELLENARSF 73 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHh---------cCCcEEEEEe-cCCHHHHHHHHHHc
Confidence 5678999999999999766665555543 2555777664 46677777776654
No 457
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.16 E-value=6.3 Score=39.85 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=15.9
Q ss_pred CcEEEEccCcchHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pi 77 (590)
.-+++.+|+|+|||.....-+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA 135 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLA 135 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 347889999999997655433
No 458
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.14 E-value=4.7 Score=44.99 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=53.7
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc----
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD---- 394 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd---- 394 (590)
...+||.++|++.+..+++.+..+.. .++++.+..+||+.+...+...+ .....|+|+|+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~------------~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~ 137 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSK------------HMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLL 137 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHh------------hcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHH
Confidence 45899999999999998888776521 13477888999998765554433 23578999994
Q ss_pred -ccccC-CCCCCCcEEE
Q 007774 395 -VAARG-LDFPKVKCII 409 (590)
Q Consensus 395 -v~~rG-lDip~v~~VI 409 (590)
.+.++ +++.++.+||
T Consensus 138 d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 138 DHLKRGTLDLSKLSGLV 154 (629)
T ss_pred HHHHcCCcchhhceEEE
Confidence 34444 6777888777
No 459
>PRK05748 replicative DNA helicase; Provisional
Probab=84.13 E-value=11 Score=40.18 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=61.4
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|.-++|.|+||.|||...+-.+.+.... .|..+++++. -+-..|+...+-.. ...+....+..|.-.
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~--------~g~~v~~fSl-Ems~~~l~~R~l~~---~~~v~~~~i~~~~l~ 269 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATK--------TDKNVAIFSL-EMGAESLVMRMLCA---EGNIDAQRLRTGQLT 269 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHh--------CCCeEEEEeC-CCCHHHHHHHHHHH---hcCCCHHHhhcCCCC
Confidence 34567999999999996554444333222 2445666653 33444555444221 111111112223222
Q ss_pred HHHHH-------HhcCCCcEEEE-CCh----HHHHHHhccCCCCCCceeEEEEechhhhhhcC-----chHHHHHHHHHh
Q 007774 135 SKEKA-------RLRKGISILVA-TPG----RLLDHLKHTSSFLHTNLRWIIFDEADRILELG-----FGKEIEEILDIL 197 (590)
Q Consensus 135 ~~~~~-------~l~~~~~IlV~-Tp~----rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g-----f~~~l~~il~~l 197 (590)
..++. .+. +..+.|. +|+ .+...+..... ...+++++|||=.+.+-..+ ....+..|.+.|
T Consensus 270 ~~e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~L 347 (448)
T PRK05748 270 DDDWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSL 347 (448)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHH
Confidence 23332 222 2345543 443 33332222111 11268899999999774222 224455665555
No 460
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=84.12 E-value=3.6 Score=49.23 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=52.1
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv 395 (590)
+.+++|.++|++.+..+++.+..+....+ +....+..+||+++..++....+.+.+|..+|||+|+-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~----------i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAG----------VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcC----------CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 57899999999999999888876531100 00112456899999999999999999999999999974
No 461
>PRK09183 transposase/IS protein; Provisional
Probab=84.08 E-value=1.9 Score=42.25 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=19.5
Q ss_pred HhcCCcEEEEccCcchHHHHHHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~~l~pi 77 (590)
+-.+.++++.||+|+|||.......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4467899999999999997554433
No 462
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=84.05 E-value=7.2 Score=41.46 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=60.9
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|.=++|.|+||+|||...+--+...... .|..+++++.- +-..|+...+-...... ....+..|.-.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~SlE-m~~~~i~~R~~~~~~~v---~~~~~~~g~l~ 261 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSLE-MSAEQLAMRMLSSESRV---DSQKLRTGKLS 261 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeCc-CCHHHHHHHHHHHhcCC---CHHHhccCCCC
Confidence 34567999999999996554444443322 24456776643 33444444333322111 11111122212
Q ss_pred HHHH-------HHhcCCCcEEE-ECCh----HHHHHHhccCCCCCCceeEEEEechhhhhhcC----chHHHHHHHHHhc
Q 007774 135 SKEK-------ARLRKGISILV-ATPG----RLLDHLKHTSSFLHTNLRWIIFDEADRILELG----FGKEIEEILDILG 198 (590)
Q Consensus 135 ~~~~-------~~l~~~~~IlV-~Tp~----rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g----f~~~l~~il~~l~ 198 (590)
..++ ..+... .+.| .+|+ .+...+..... -..+++||||=.+.+...+ ....+..|...|+
T Consensus 262 ~~~~~~~~~a~~~l~~~-~l~i~d~~~~~~~~i~~~i~~~~~--~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk 338 (434)
T TIGR00665 262 DEDWEKLTSAAGKLSEA-PLYIDDTPGLTITELRAKARRLKR--EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLK 338 (434)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHHHH--hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 2222 223332 3444 3443 34333322111 1257899999998764322 2244555655554
No 463
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=83.84 E-value=76 Score=35.16 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=56.9
Q ss_pred cCCCCCHHHHHHHHHhCCCCCC---------cHHHHHHHHHHhc-------CCcEEEEccCcchHHHHHHHHHHHHHhhc
Q 007774 21 SSLGLHSTLCDQLRERLGFEAP---------TKVQAQAIPVILS-------GRHVLVNAATGTGKTVAYLAPIINHLQSY 84 (590)
Q Consensus 21 ~~l~l~~~l~~~l~~~~g~~~~---------t~~Q~~~i~~il~-------g~dvlv~a~TGsGKTl~~l~pil~~l~~~ 84 (590)
+.++-.+.-++.|++.++=..| |.-|.+|+-.+.. .--+-+.|.-|-||+.|.-+.+...+.-
T Consensus 224 ~~~~~~e~~lk~Lkesl~~~~P~G~Lv~~~kT~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~- 302 (1011)
T KOG2036|consen 224 ENLSPSERELKELKESLSDDQPAGPLVGLCKTLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAF- 302 (1011)
T ss_pred ccCChhhhhhHhhhhhhcCCCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhc-
Confidence 3344455566667666554443 6778888755442 2357889999999999988888776643
Q ss_pred CCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 85 SPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 85 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
.-..+.|-+|+-|=....++.+
T Consensus 303 -------GysnIyvtSPspeNlkTlFeFv 324 (1011)
T KOG2036|consen 303 -------GYSNIYVTSPSPENLKTLFEFV 324 (1011)
T ss_pred -------CcceEEEcCCChHHHHHHHHHH
Confidence 2344777789877666666543
No 464
>CHL00176 ftsH cell division protein; Validated
Probab=83.74 E-value=7.4 Score=43.35 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=15.7
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
.+.+++.+|+|+|||+.+-
T Consensus 216 p~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999997543
No 465
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=83.65 E-value=1 Score=50.12 Aligned_cols=48 Identities=25% Similarity=0.207 Sum_probs=37.4
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.++++.||||||||..+++|-+-.. +..+||+=|--|+........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-----------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-----------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-----------CCCEEEEeCCchHHHHHHHHHHh
Confidence 4799999999999999999975431 23588888888887776665554
No 466
>CHL00095 clpC Clp protease ATP binding subunit
Probab=83.61 E-value=5.1 Score=46.36 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=17.0
Q ss_pred CcEEEEccCcchHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pi 77 (590)
.++++.||+|+|||...-..+
T Consensus 201 ~n~lL~G~pGvGKTal~~~la 221 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLA 221 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 589999999999997664433
No 467
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.51 E-value=11 Score=41.89 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.4
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
+-+++.+|+|+|||.++-+
T Consensus 111 ~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKI 129 (637)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3489999999999976544
No 468
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=83.24 E-value=2.9 Score=50.32 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=46.4
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
.++++|.|+.|||||.+..--++..+... .....+++|+-|+.-|.++.+.+.+.+..
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~------~~~~~i~~~t~t~~aa~em~~Ri~~~L~~ 67 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNG------VPPSKILCLTYTKAAAAEMQNRVFDRLGE 67 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcC------CCCCeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 46899999999999988877777776542 22457999999999999998887776653
No 469
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.19 E-value=10 Score=39.52 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=16.0
Q ss_pred CcEEEEccCcchHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pi 77 (590)
+.+++.+|.|+|||+..-.-+
T Consensus 187 rglLLfGPpgtGKtmL~~aiA 207 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIA 207 (428)
T ss_pred chhheecCCCCchHHHHHHHH
Confidence 468999999999997544433
No 470
>PRK09087 hypothetical protein; Validated
Probab=83.18 E-value=3.5 Score=39.42 Aligned_cols=26 Identities=4% Similarity=-0.038 Sum_probs=19.2
Q ss_pred EEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 172 WIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 172 ~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
+|++|++|.+. .-...+..+++.+..
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~ 115 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQ 115 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHh
Confidence 69999999753 245667778877765
No 471
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=83.06 E-value=4.1 Score=39.72 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=14.9
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
.+++.+|+|.|||.-+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 589999999999965444
No 472
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=82.98 E-value=3.1 Score=46.92 Aligned_cols=71 Identities=24% Similarity=0.171 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
.+++-|.+++... ...++|.|..|||||.+-.--+...+.... -....++.++=|+-.|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~-----v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGG-----VDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCC-----cChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4789999998765 557999999999999988777777665422 1234499999999999999999888765
No 473
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.93 E-value=5 Score=42.87 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=75.8
Q ss_pred EEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchH---H
Q 007774 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS---K 136 (590)
Q Consensus 60 lv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~---~ 136 (590)
+-+--.+.||+-.-++.+.+.+.. +-.+.+||.+-+.+-|.|.+.++.. +..+.++.++|+.... .
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~-------g~~PP~lIfVQs~eRak~L~~~L~~----~~~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVAS-------GFKPPVLIFVQSKERAKQLFEELEI----YDNINVDVIHGERSQKQRDE 429 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhc-------cCCCCeEEEEecHHHHHHHHHHhhh----ccCcceeeEecccchhHHHH
Confidence 444456788888888888887755 3456799999999999999999972 5678888888885433 3
Q ss_pred HHHHhcCC-CcEEEECChHHHHHHhccCCCCCCceeEEEEechh
Q 007774 137 EKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD 179 (590)
Q Consensus 137 ~~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah 179 (590)
..++++.| ..++||| +++.. ..++.++.+||-+..-
T Consensus 430 ~~~~FR~g~IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred HHHHHhccCeeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 34666665 8999999 55554 4778899999985543
No 474
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.91 E-value=1.7 Score=41.67 Aligned_cols=35 Identities=17% Similarity=0.426 Sum_probs=23.0
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcC
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~P 101 (590)
+++|.|++|||||. +++-++..+.. .-..+++++|
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~--------~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH--------KFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc--------cCCEEEEEec
Confidence 68999999999994 44545544422 1234566667
No 475
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=82.86 E-value=11 Score=38.69 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=18.8
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhc
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILG 198 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~ 198 (590)
..-+++|+||||.+.. .....++..+.
T Consensus 116 ~~~~vviidea~~l~~----~~~~~Ll~~le 142 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSK----SAFNALLKTLE 142 (355)
T ss_pred CCceEEEEeChhhcCH----HHHHHHHHHHh
Confidence 4667899999998754 34555666664
No 476
>PRK14701 reverse gyrase; Provisional
Probab=82.82 E-value=5.2 Score=49.33 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv 395 (590)
.+.+++|.++|++.+...+..++.+.... -.+..+..+||+++..++.+.++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~-----------~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKA-----------NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhc-----------CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 35689999999999999988887753211 02567888999999999999999999999999999974
No 477
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.78 E-value=1.8 Score=47.67 Aligned_cols=43 Identities=35% Similarity=0.471 Sum_probs=28.1
Q ss_pred HhCCCCCCcHHHHHHHHHHhc--CCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 35 ERLGFEAPTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 35 ~~~g~~~~t~~Q~~~i~~il~--g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
+.+|| .+-|.+.+..++. ...+++.+|||||||.+. ..++..+
T Consensus 296 ~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 296 DKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 34564 4566666655543 346899999999999664 3455554
No 478
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.76 E-value=3.5 Score=45.40 Aligned_cols=137 Identities=23% Similarity=0.254 Sum_probs=72.3
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcC-----CcceEEEE
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH-----WIVPGYVM 129 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~-----~~~~~~~~ 129 (590)
.|+.+.+.+|.|||||-+. -+++++.. | ..|.-.+==+|-+++-.++...--.+...-+ .+.....+
T Consensus 493 pGe~vALVGPSGsGKSTia--sLL~rfY~--P----tsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~Y 564 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIA--SLLLRFYD--P----TSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAY 564 (716)
T ss_pred CCCEEEEECCCCCCHHHHH--HHHHHhcC--C----CCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhc
Confidence 5788999999999999644 34555533 2 1222222234666655444431111110000 00111112
Q ss_pred cCCchHH--------------HHHHhcCCCcEEEECChHHHHHHhccC----CCCCCceeEEEEechhhhhhcCchHHHH
Q 007774 130 GGENRSK--------------EKARLRKGISILVATPGRLLDHLKHTS----SFLHTNLRWIIFDEADRILELGFGKEIE 191 (590)
Q Consensus 130 gg~~~~~--------------~~~~l~~~~~IlV~Tp~rl~~~l~~~~----~~~~~~l~~lVlDEah~ll~~gf~~~l~ 191 (590)
|-.+... ....+..|++-.|+.-|..+.-=++.. .-.+.+-..||+|||-..+|..-+..+.
T Consensus 565 G~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq 644 (716)
T KOG0058|consen 565 GLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQ 644 (716)
T ss_pred CCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHH
Confidence 2221111 123334566677777654432111100 0123466789999999999998999999
Q ss_pred HHHHHhcc
Q 007774 192 EILDILGS 199 (590)
Q Consensus 192 ~il~~l~~ 199 (590)
+.+..+.+
T Consensus 645 ~aL~~~~~ 652 (716)
T KOG0058|consen 645 EALDRLMQ 652 (716)
T ss_pred HHHHHhhc
Confidence 99988874
No 479
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=82.70 E-value=13 Score=33.84 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=30.8
Q ss_pred CceeEEEEechhhhhhcCch--HHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHh
Q 007774 168 TNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI 235 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~--~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~ 235 (590)
..+++||+||+=..++.|+- +++..++..-|. ..-+|+.--.+|+.+...+..
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~---------------~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRPE---------------SLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-T---------------T-EEEEE-SS--HHHHHH-SE
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCC---------------CeEEEEECCCCCHHHHHhCCe
Confidence 57899999999999998873 445555554332 344455444566666666653
No 480
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.51 E-value=0.79 Score=47.04 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=15.8
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
+..|+|+.+|||||||+.+
T Consensus 225 eKSNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLA 243 (564)
T ss_pred ecccEEEECCCCCchhHHH
Confidence 3468999999999999744
No 481
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.33 E-value=6 Score=43.69 Aligned_cols=74 Identities=8% Similarity=0.083 Sum_probs=54.1
Q ss_pred ceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc-----
Q 007774 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD----- 394 (590)
Q Consensus 320 ~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd----- 394 (590)
.++||.++|++.+..+++.+..+... .++.+..+||+.+...+...++ +..+|||+|.
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~-------------~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~ 147 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGAD-------------LGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLID 147 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhcc-------------CCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHH
Confidence 58999999999999998888765322 2677889999988766554443 4678999995
Q ss_pred cccc--CCCCCCCcEEEE
Q 007774 395 VAAR--GLDFPKVKCIIQ 410 (590)
Q Consensus 395 v~~r--GlDip~v~~VI~ 410 (590)
.+.+ .+++..+++||.
T Consensus 148 ~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 148 YVKQHKVVSLHACEICVL 165 (572)
T ss_pred HHHhccccchhheeeeEe
Confidence 3333 366777877663
No 482
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=82.29 E-value=2.6 Score=44.55 Aligned_cols=57 Identities=9% Similarity=0.108 Sum_probs=48.9
Q ss_pred eEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc
Q 007774 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD 394 (590)
Q Consensus 321 k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd 394 (590)
-.+||++|++.+-.+...|..... .+++.+..+.|+|+...+++++++ ...|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~-------------~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAE-------------KTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcc-------------ccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 489999999999988888876532 358999999999999999999987 568999997
No 483
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=82.28 E-value=2 Score=47.34 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=88.0
Q ss_pred CCcHHHHHHHHHHhc--------CC--cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 41 APTKVQAQAIPVILS--------GR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~--------g~--dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.+...|.+++-...+ |. ..|+-...|.||-.+..-.|++..++ ...++|+++-+..|-....
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk--------GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK--------GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc--------ccceeEEEEeccccccchh
Confidence 467788888866543 22 35777777777765544445555443 3567999999988876666
Q ss_pred HHHHHHHhhcCCcceEEEEcCCchHHH--HHHhcCCCcEEEECChHHHHHHhccCC------------CCCCceeEEEEe
Q 007774 111 EILHKLLHRFHWIVPGYVMGGENRSKE--KARLRKGISILVATPGRLLDHLKHTSS------------FLHTNLRWIIFD 176 (590)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~~~~IlV~Tp~rl~~~l~~~~~------------~~~~~l~~lVlD 176 (590)
..+..+... .+.+..+.. .+.... +..-.-.-.|+++|+..|+.--..+.. +.-+.=.+||||
T Consensus 336 RDL~DigA~--~I~V~alnK-~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 336 RDLRDIGAT--GIAVHALNK-FKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred hchhhcCCC--Cccceehhh-cccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 666665431 122222110 000000 000001124899998665432221110 000122479999
Q ss_pred chhhhhhc---------CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecc
Q 007774 177 EADRILEL---------GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL 225 (590)
Q Consensus 177 Eah~ll~~---------gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~ 225 (590)
|||+.-+. .-+..+-.+-..|| ..+++.-|||-
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP----------------~ARVVYASATG 454 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP----------------NARVVYASATG 454 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCC----------------CceEEEeeccC
Confidence 99986542 13466666777776 57778888875
No 484
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=82.13 E-value=2.9 Score=46.50 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=36.7
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH--HHHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE--LCLQVYEILHKLL 117 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre--La~Q~~~~~~~~~ 117 (590)
++++|.|+||+|||..+...+.+.+.. |..++++=|-.. |...+...++...
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~~---------g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIRR---------GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 578999999999998775555555532 455777778764 6666666666543
No 485
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=82.01 E-value=3.6 Score=45.50 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=26.3
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
.+-.++|+|||-.-+|..-+..+...+..+.+
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~ 513 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLK 513 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhc
Confidence 45578999999999998888888888876653
No 486
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.99 E-value=0.96 Score=44.65 Aligned_cols=20 Identities=45% Similarity=0.672 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCcchHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVA 72 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~ 72 (590)
+..++.+++.||+|+|||..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHH
T ss_pred HHcCCcEEEECCCCCchhHH
Confidence 34678999999999999964
No 487
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.88 E-value=5.4 Score=46.15 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhc------------CC---cEEEEccCcchHHHHHHH
Q 007774 44 KVQAQAIPVILS------------GR---HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 44 ~~Q~~~i~~il~------------g~---dvlv~a~TGsGKTl~~l~ 75 (590)
..|..++..+.. ++ .+++.||||+|||..+-.
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~ 558 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKA 558 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHH
Confidence 368888766532 11 368999999999975544
No 488
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=81.86 E-value=2.9 Score=39.87 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=35.0
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|.-+++.+++|+|||...+-.+.+.+. .+..+++++.. +-..|+.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~---------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK---------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 3567899999999999766555555543 25567777654 4566666666544
No 489
>PRK08006 replicative DNA helicase; Provisional
Probab=81.84 E-value=11 Score=40.32 Aligned_cols=131 Identities=17% Similarity=0.105 Sum_probs=61.9
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|.=++|.|.||.|||...+-.+...... .+..+++++.- .-..|+.+.+-.... .+....+..|.-.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~--------~g~~V~~fSlE-M~~~ql~~Rlla~~~---~v~~~~i~~~~l~ 290 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML--------QDKPVLIFSLE-MPGEQIMMRMLASLS---RVDQTRIRTGQLD 290 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHHHhc---CCCHHHhhcCCCC
Confidence 34557889999999996544433333222 24456666543 334444444332211 1111112222222
Q ss_pred HHHHHH-------hcCCCcEEEE-CC----hHHHHHHhccCCCCCCceeEEEEechhhhhhc----CchHHHHHHHHHhc
Q 007774 135 SKEKAR-------LRKGISILVA-TP----GRLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILDILG 198 (590)
Q Consensus 135 ~~~~~~-------l~~~~~IlV~-Tp----~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~----gf~~~l~~il~~l~ 198 (590)
..++.+ +....++.|- +| ..+......... ....+++||||=.+.+... .....+..|.+.|+
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK 369 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFR-EHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLK 369 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHH
Confidence 233322 2133445554 33 333322221100 1136889999999976422 23345666665554
No 490
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.72 E-value=2.3 Score=37.92 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=24.6
Q ss_pred ceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 169 NLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
.-+++++||...-+|......+..++..+..
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~ 128 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAE 128 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 4578999999988887777778777777753
No 491
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=81.70 E-value=10 Score=40.41 Aligned_cols=20 Identities=30% Similarity=0.218 Sum_probs=16.2
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
.+|+.||.|+|||.++...+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999998765543
No 492
>PRK07004 replicative DNA helicase; Provisional
Probab=81.52 E-value=4.4 Score=43.31 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=60.6
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|.=++|.|.||+|||...+-.+...... .+..+++++. -.-..|+...+-.. ...+....+.-|.-.
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~--------~~~~v~~fSl-EM~~~ql~~R~la~---~~~v~~~~i~~g~l~ 279 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE--------YGLPVAVFSM-EMPGTQLAMRMLGS---VGRLDQHRMRTGRLT 279 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH--------cCCeEEEEeC-CCCHHHHHHHHHHh---hcCCCHHHHhcCCCC
Confidence 34557899999999996554433333222 2445666653 22333444333211 111111111122222
Q ss_pred HHHHH-------HhcCCCcEEEE-CCh----HHHHHHhccCCCCCCceeEEEEechhhhhhcC----chHHHHHHHHHhc
Q 007774 135 SKEKA-------RLRKGISILVA-TPG----RLLDHLKHTSSFLHTNLRWIIFDEADRILELG----FGKEIEEILDILG 198 (590)
Q Consensus 135 ~~~~~-------~l~~~~~IlV~-Tp~----rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g----f~~~l~~il~~l~ 198 (590)
..++. .+. +..+.|. +|+ .+......... ....+++||+|=.+.+...+ ....+..|.+.|+
T Consensus 280 ~~e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK 357 (460)
T PRK07004 280 DEDWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLK 357 (460)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHH
Confidence 33332 232 2345553 443 33332221111 12357899999999775322 3345566665554
No 493
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=81.50 E-value=12 Score=39.81 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=33.0
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
|.-+++.+++|+|||...+..+.+.. . .+.++++++.- |-..|+...+..+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a-~--------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLA-K--------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-h--------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 45689999999999976655444332 2 23468888754 5556666555443
No 494
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=81.40 E-value=1.2 Score=49.63 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=37.9
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.++++.||||||||..+++|-+-.. +..+||+=|.-|+........++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~-----------~~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW-----------PGSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC-----------CCCEEEEeCcchHHHHHHHHHHh
Confidence 5799999999999999999976542 23588888998887776665554
No 495
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.38 E-value=9 Score=38.13 Aligned_cols=114 Identities=18% Similarity=0.297 Sum_probs=63.1
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH-----------HHHHHHHHHHHHHhhcCCcc
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE-----------LCLQVYEILHKLLHRFHWIV 124 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre-----------La~Q~~~~~~~~~~~~~~~~ 124 (590)
+|=+++.+|+|+||| ..+-.+.+.|.-+-. .......+|=..... |+.++++.++++... ....
T Consensus 177 NRliLlhGPPGTGKT-SLCKaLaQkLSIR~~---~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d-~~~l 251 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKT-SLCKALAQKLSIRTN---DRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED-RGNL 251 (423)
T ss_pred eeEEEEeCCCCCChh-HHHHHHHHhheeeec---CccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC-CCcE
Confidence 355799999999999 445566666643211 112233455555544 455555556666553 2233
Q ss_pred eEEEEc---------------CCchH---------HHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh
Q 007774 125 PGYVMG---------------GENRS---------KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (590)
Q Consensus 125 ~~~~~g---------------g~~~~---------~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ 180 (590)
+.++.. .+..+ .+.+++++.++++|-|..-|.+ .++.-.+|-||-
T Consensus 252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----------siD~AfVDRADi 320 (423)
T KOG0744|consen 252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----------SIDVAFVDRADI 320 (423)
T ss_pred EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----------HHHHHhhhHhhh
Confidence 333333 11111 1346677778888777655544 445566788885
Q ss_pred hhhcC
Q 007774 181 ILELG 185 (590)
Q Consensus 181 ll~~g 185 (590)
-.-.|
T Consensus 321 ~~yVG 325 (423)
T KOG0744|consen 321 VFYVG 325 (423)
T ss_pred eeecC
Confidence 44444
No 496
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=81.35 E-value=5.1 Score=46.64 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=68.0
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEec-ccc
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-DVA 396 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaT-dv~ 396 (590)
.+..+.|.++|.=.++.+++-|++...+ ..++|..+..=.+.++...+++...+|+++|+|.| .++
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~-------------fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL 708 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAG-------------FPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL 708 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcC-------------CCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh
Confidence 4679999999999999999998764211 14567788888899999999999999999999999 678
Q ss_pred ccCCCCCCCcEEEE
Q 007774 397 ARGLDFPKVKCIIQ 410 (590)
Q Consensus 397 ~rGlDip~v~~VI~ 410 (590)
+.++-|.++.++|.
T Consensus 709 ~kdv~FkdLGLlII 722 (1139)
T COG1197 709 SKDVKFKDLGLLII 722 (1139)
T ss_pred CCCcEEecCCeEEE
Confidence 88899999998883
No 497
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.33 E-value=4.4 Score=42.84 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=16.6
Q ss_pred cEEEEccCcchHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPII 78 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil 78 (590)
.+++.+++|+|||.+..-.+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578999999999987655443
No 498
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.30 E-value=1.3 Score=42.43 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.0
Q ss_pred cEEEEccCcchHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYL 74 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l 74 (590)
=+++.++|||||+.+..
T Consensus 129 LviiVGaTGSGKSTtmA 145 (375)
T COG5008 129 LVIIVGATGSGKSTTMA 145 (375)
T ss_pred eEEEECCCCCCchhhHH
Confidence 47999999999996543
No 499
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=81.14 E-value=17 Score=39.57 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.9
Q ss_pred EEEEccCcchHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAP 76 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~p 76 (590)
.|+.||.|+|||.++...
T Consensus 39 yLf~Gp~G~GKTt~Ar~L 56 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIF 56 (535)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 589999999999766553
No 500
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=80.94 E-value=31 Score=35.30 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHhcCCc------EEEEccCcchHHHH
Q 007774 42 PTKVQAQAIPVILSGRH------VLVNAATGTGKTVA 72 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~d------vlv~a~TGsGKTl~ 72 (590)
.+..|...+..++..++ +++.|.+|||||..
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~ 46 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL 46 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH
Confidence 78899999988887654 48999999999964
Done!