Query 007774
Match_columns 590
No_of_seqs 323 out of 2805
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 10:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 9E-63 3.1E-67 521.9 44.8 360 18-451 56-416 (434)
2 3sqw_A ATP-dependent RNA helic 100.0 1.9E-59 6.6E-64 514.7 41.5 447 17-550 16-476 (579)
3 3i5x_A ATP-dependent RNA helic 100.0 2.4E-59 8.2E-64 513.5 41.1 463 19-568 69-550 (563)
4 2i4i_A ATP-dependent RNA helic 100.0 2.2E-58 7.6E-63 487.1 41.2 367 18-453 15-393 (417)
5 2j0s_A ATP-dependent RNA helic 100.0 1.6E-58 5.5E-63 487.1 38.9 368 16-463 35-404 (410)
6 1xti_A Probable ATP-dependent 100.0 1.7E-56 5.8E-61 468.5 40.7 371 16-464 6-380 (391)
7 1s2m_A Putative ATP-dependent 100.0 2.5E-56 8.6E-61 468.7 40.8 366 17-463 20-386 (400)
8 3fht_A ATP-dependent RNA helic 100.0 1.8E-56 6.2E-61 471.5 39.1 374 9-463 16-401 (412)
9 3eiq_A Eukaryotic initiation f 100.0 1.9E-56 6.6E-61 471.7 36.2 366 18-463 40-408 (414)
10 3fmp_B ATP-dependent RNA helic 100.0 5.4E-58 1.9E-62 492.6 20.4 372 11-463 85-468 (479)
11 1hv8_A Putative ATP-dependent 100.0 7.5E-55 2.6E-59 451.6 40.8 361 16-463 4-366 (367)
12 3pey_A ATP-dependent RNA helic 100.0 3.6E-54 1.2E-58 451.1 40.3 362 17-462 4-378 (395)
13 1fuu_A Yeast initiation factor 100.0 1.6E-55 5.6E-60 461.4 23.6 365 17-462 20-386 (394)
14 2z0m_A 337AA long hypothetical 100.0 3E-51 1E-55 419.6 38.8 333 25-454 1-333 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 9.8E-51 3.4E-55 442.1 35.4 342 16-452 19-383 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 2.6E-50 9E-55 434.5 34.7 342 18-454 2-354 (523)
17 3oiy_A Reverse gyrase helicase 100.0 6.3E-50 2.2E-54 421.9 31.1 337 27-454 8-374 (414)
18 3fho_A ATP-dependent RNA helic 100.0 1.4E-50 4.7E-55 436.7 21.1 361 19-463 120-492 (508)
19 1tf5_A Preprotein translocase 100.0 1E-47 3.5E-52 418.0 26.2 366 36-444 79-546 (844)
20 4ddu_A Reverse gyrase; topoiso 100.0 5.8E-47 2E-51 437.2 31.7 337 29-454 67-501 (1104)
21 4a2p_A RIG-I, retinoic acid in 100.0 5.9E-46 2E-50 406.8 33.3 385 38-445 4-510 (556)
22 3l9o_A ATP-dependent RNA helic 100.0 1.7E-46 5.7E-51 433.5 29.3 398 18-454 162-609 (1108)
23 3tbk_A RIG-I helicase domain; 100.0 1.7E-45 5.9E-50 402.8 35.4 389 41-451 4-515 (555)
24 2va8_A SSO2462, SKI2-type heli 100.0 6.9E-45 2.4E-49 409.1 35.2 369 16-444 6-409 (715)
25 2ykg_A Probable ATP-dependent 100.0 3.9E-46 1.3E-50 419.0 24.5 389 30-450 3-523 (696)
26 4a2q_A RIG-I, retinoic acid in 100.0 6.9E-45 2.3E-49 412.9 34.6 387 36-445 243-751 (797)
27 1gku_B Reverse gyrase, TOP-RG; 100.0 6.9E-46 2.4E-50 428.7 24.8 346 19-454 31-465 (1054)
28 2fsf_A Preprotein translocase 100.0 1.1E-45 3.7E-50 400.8 23.5 373 36-445 70-585 (853)
29 2zj8_A DNA helicase, putative 100.0 6.1E-45 2.1E-49 409.4 30.5 360 19-445 2-389 (720)
30 2p6r_A Afuhel308 helicase; pro 100.0 9E-45 3.1E-49 406.9 27.1 364 19-445 2-390 (702)
31 2xgj_A ATP-dependent RNA helic 100.0 1.8E-43 6.1E-48 404.9 36.4 377 35-454 81-511 (1010)
32 1nkt_A Preprotein translocase 100.0 2.1E-44 7.3E-49 390.9 27.1 367 36-445 107-619 (922)
33 2whx_A Serine protease/ntpase/ 100.0 7.4E-47 2.5E-51 412.8 5.1 394 19-555 150-569 (618)
34 4a2w_A RIG-I, retinoic acid in 100.0 3.7E-43 1.3E-47 402.7 33.4 386 37-445 244-751 (936)
35 1gm5_A RECG; helicase, replica 100.0 1.2E-43 3.9E-48 394.2 25.9 335 26-453 354-710 (780)
36 1wp9_A ATP-dependent RNA helic 100.0 1.7E-42 5.7E-47 372.4 33.4 359 41-444 9-476 (494)
37 2jlq_A Serine protease subunit 100.0 3.2E-45 1.1E-49 388.4 6.8 372 38-554 1-401 (451)
38 1yks_A Genome polyprotein [con 100.0 2.1E-45 7.2E-50 388.1 4.2 356 52-555 4-390 (440)
39 4a4z_A Antiviral helicase SKI2 100.0 9.3E-42 3.2E-46 390.8 32.6 379 33-453 32-504 (997)
40 2eyq_A TRCF, transcription-rep 100.0 2E-41 6.7E-46 393.7 35.6 327 22-443 585-922 (1151)
41 4gl2_A Interferon-induced heli 100.0 3.4E-43 1.2E-47 395.3 19.5 383 38-443 5-518 (699)
42 4f92_B U5 small nuclear ribonu 100.0 1.9E-41 6.6E-46 404.2 34.0 390 8-457 894-1322(1724)
43 2z83_A Helicase/nucleoside tri 100.0 1.1E-43 3.7E-48 377.3 6.0 360 51-555 16-404 (459)
44 2wv9_A Flavivirin protease NS2 100.0 1.4E-44 4.9E-49 397.0 -2.6 373 36-555 205-624 (673)
45 2oca_A DAR protein, ATP-depend 100.0 2E-40 6.9E-45 358.8 25.6 336 41-441 113-453 (510)
46 2xau_A PRE-mRNA-splicing facto 100.0 1.3E-39 4.4E-44 364.3 27.0 350 16-445 70-445 (773)
47 4f92_B U5 small nuclear ribonu 100.0 3.3E-39 1.1E-43 385.0 29.7 366 38-454 76-484 (1724)
48 2fwr_A DNA repair protein RAD2 100.0 7.7E-40 2.6E-44 350.8 18.9 321 41-439 93-448 (472)
49 3o8b_A HCV NS3 protease/helica 100.0 3.6E-40 1.2E-44 356.4 15.8 280 42-447 218-518 (666)
50 3fmo_B ATP-dependent RNA helic 100.0 1.1E-37 3.6E-42 312.5 21.7 212 11-247 85-299 (300)
51 3fe2_A Probable ATP-dependent 100.0 7.3E-37 2.5E-41 297.6 24.7 213 17-248 28-240 (242)
52 2v6i_A RNA helicase; membrane, 100.0 3.6E-37 1.2E-41 324.5 21.2 282 55-452 1-303 (431)
53 3h1t_A Type I site-specific re 100.0 2.3E-37 7.9E-42 340.5 18.6 347 41-432 178-545 (590)
54 3ber_A Probable ATP-dependent 100.0 3.7E-36 1.3E-40 293.5 24.4 207 17-246 42-248 (249)
55 3iuy_A Probable ATP-dependent 100.0 2.4E-36 8.2E-41 291.4 22.1 210 17-245 18-228 (228)
56 1vec_A ATP-dependent RNA helic 100.0 9.2E-36 3.2E-40 282.5 24.9 204 17-243 2-205 (206)
57 3rc3_A ATP-dependent RNA helic 100.0 5.1E-36 1.7E-40 328.1 25.9 288 49-454 148-455 (677)
58 3ly5_A ATP-dependent RNA helic 100.0 7.6E-36 2.6E-40 293.6 22.7 207 15-240 49-257 (262)
59 1q0u_A Bstdead; DEAD protein, 100.0 7.2E-36 2.5E-40 286.1 21.8 209 17-248 3-214 (219)
60 2oxc_A Probable ATP-dependent 100.0 1.7E-35 5.9E-40 285.6 23.8 206 17-246 23-229 (230)
61 2pl3_A Probable ATP-dependent 100.0 2.4E-35 8.2E-40 285.9 24.7 212 16-247 23-234 (236)
62 3bor_A Human initiation factor 100.0 1.8E-35 6.1E-40 286.8 22.5 206 17-246 29-235 (237)
63 2gxq_A Heat resistant RNA depe 100.0 6.4E-35 2.2E-39 276.9 24.4 205 19-246 2-206 (207)
64 1wrb_A DJVLGB; RNA helicase, D 100.0 4.8E-35 1.6E-39 286.9 21.3 217 18-248 23-242 (253)
65 3dmq_A RNA polymerase-associat 100.0 8.7E-35 3E-39 333.8 26.4 373 41-460 153-633 (968)
66 1t6n_A Probable ATP-dependent 100.0 1.3E-34 4.5E-39 277.5 23.0 205 17-244 13-219 (220)
67 1qde_A EIF4A, translation init 100.0 3.6E-34 1.2E-38 275.3 23.3 206 18-248 14-219 (224)
68 1z63_A Helicase of the SNF2/RA 100.0 6.1E-34 2.1E-38 307.2 26.5 343 41-439 37-447 (500)
69 3dkp_A Probable ATP-dependent 100.0 2.8E-34 9.5E-39 280.0 17.4 210 18-248 25-243 (245)
70 3jux_A Protein translocase sub 100.0 7.9E-32 2.7E-36 286.4 36.1 337 36-445 71-589 (822)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 7.7E-33 2.6E-37 315.1 22.4 348 41-442 271-708 (1038)
72 1z3i_X Similar to RAD54-like; 100.0 2.1E-30 7.1E-35 286.2 33.0 369 41-453 55-540 (644)
73 3mwy_W Chromo domain-containin 100.0 2.7E-31 9.2E-36 300.6 24.9 364 41-454 236-697 (800)
74 1c4o_A DNA nucleotide excision 100.0 1.1E-28 3.8E-33 272.1 31.1 136 298-453 420-560 (664)
75 2ipc_A Preprotein translocase 100.0 1.5E-27 5E-32 258.3 38.0 149 36-199 75-248 (997)
76 2d7d_A Uvrabc system protein B 100.0 6.9E-28 2.4E-32 265.6 29.7 135 298-452 426-565 (661)
77 2hjv_A ATP-dependent RNA helic 100.0 2.3E-28 7.8E-33 222.2 18.2 154 286-460 6-160 (163)
78 1t5i_A C_terminal domain of A 100.0 3.3E-28 1.1E-32 223.0 15.4 156 287-463 3-160 (172)
79 2rb4_A ATP-dependent RNA helic 100.0 6.3E-28 2.1E-32 222.1 17.0 158 286-464 4-169 (175)
80 1fuk_A Eukaryotic initiation f 100.0 1.7E-27 5.9E-32 217.0 17.2 154 288-462 2-157 (165)
81 3eaq_A Heat resistant RNA depe 100.0 2.7E-27 9.3E-32 224.5 18.9 155 288-463 4-159 (212)
82 2p6n_A ATP-dependent RNA helic 99.9 1.5E-27 5.2E-32 222.1 16.1 146 286-453 26-172 (191)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 4E-27 1.4E-31 218.3 15.2 150 285-454 15-164 (185)
84 3i32_A Heat resistant RNA depe 99.9 2.6E-26 9E-31 227.9 18.7 153 290-463 3-156 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 2.7E-27 9.3E-32 216.7 0.0 152 289-461 3-156 (170)
86 3b6e_A Interferon-induced heli 99.9 2.3E-24 7.7E-29 205.4 13.3 190 27-224 19-216 (216)
87 3llm_A ATP-dependent RNA helic 99.9 1.4E-23 4.8E-28 202.6 15.3 170 41-241 61-232 (235)
88 2vl7_A XPD; helicase, unknown 99.9 1.2E-22 3.9E-27 219.7 23.5 129 37-183 4-189 (540)
89 3crv_A XPD/RAD3 related DNA he 99.9 1.5E-21 5.2E-26 211.7 25.3 132 38-183 1-187 (551)
90 1rif_A DAR protein, DNA helica 99.9 1.8E-22 6.2E-27 200.5 11.1 159 41-234 113-271 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 2.7E-18 9.3E-23 187.6 23.9 71 41-119 3-77 (620)
92 2fz4_A DNA repair protein RAD2 99.8 3.3E-19 1.1E-23 171.8 12.7 137 41-227 93-230 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 4.4E-19 1.5E-23 173.9 12.8 139 297-453 92-236 (271)
94 1w36_D RECD, exodeoxyribonucle 99.0 2.4E-09 8.1E-14 116.9 12.9 146 42-224 150-298 (608)
95 3upu_A ATP-dependent DNA helic 98.1 1.3E-05 4.6E-10 84.4 11.8 70 36-113 20-94 (459)
96 3e1s_A Exodeoxyribonuclease V, 98.0 1.8E-05 6.1E-10 85.4 10.6 64 41-113 189-252 (574)
97 4b3f_X DNA-binding protein smu 97.9 3E-05 1E-09 85.4 10.8 66 41-115 189-255 (646)
98 2gk6_A Regulator of nonsense t 97.9 6.9E-05 2.4E-09 82.0 13.0 69 40-116 179-247 (624)
99 2xzl_A ATP-dependent helicase 97.8 0.00015 5.2E-09 81.2 13.1 69 40-116 359-427 (802)
100 2wjy_A Regulator of nonsense t 97.7 0.00018 6.1E-09 80.5 12.5 67 41-115 356-422 (800)
101 3hgt_A HDA1 complex subunit 3; 97.6 0.00026 8.8E-09 69.4 9.9 111 297-431 105-221 (328)
102 2o0j_A Terminase, DNA packagin 97.5 0.0014 4.9E-08 66.4 15.3 134 41-197 163-299 (385)
103 3cpe_A Terminase, DNA packagin 97.2 0.0032 1.1E-07 68.3 13.7 74 41-121 163-236 (592)
104 3lfu_A DNA helicase II; SF1 he 96.5 0.0039 1.3E-07 68.5 8.2 71 40-117 8-78 (647)
105 3ec2_A DNA replication protein 96.4 0.016 5.3E-07 52.1 10.1 21 55-75 37-57 (180)
106 2orw_A Thymidine kinase; TMTK, 96.2 0.0026 8.8E-08 57.7 3.4 40 55-103 2-41 (184)
107 1pjr_A PCRA; DNA repair, DNA r 96.1 0.012 4.2E-07 65.4 8.7 72 40-118 10-81 (724)
108 1uaa_A REP helicase, protein ( 95.9 0.012 4.2E-07 64.9 7.9 71 41-118 2-72 (673)
109 3u4q_A ATP-dependent helicase/ 95.9 0.014 4.9E-07 68.8 8.8 126 41-180 10-138 (1232)
110 2j9r_A Thymidine kinase; TK1, 95.8 0.023 7.9E-07 52.2 7.7 39 56-103 28-66 (214)
111 3vkw_A Replicase large subunit 95.6 0.033 1.1E-06 57.2 8.9 96 58-197 163-258 (446)
112 1xx6_A Thymidine kinase; NESG, 95.6 0.027 9.2E-07 51.1 7.4 38 56-102 8-45 (191)
113 1l8q_A Chromosomal replication 95.5 0.075 2.6E-06 52.6 11.0 25 56-81 37-61 (324)
114 2b8t_A Thymidine kinase; deoxy 95.4 0.01 3.5E-07 55.3 4.1 91 55-181 11-101 (223)
115 3te6_A Regulatory protein SIR3 95.4 0.15 5E-06 50.2 12.5 26 56-82 45-70 (318)
116 2kjq_A DNAA-related protein; s 95.3 0.013 4.6E-07 50.9 4.3 29 169-198 83-111 (149)
117 1d2n_A N-ethylmaleimide-sensit 95.3 0.19 6.6E-06 48.1 13.0 19 57-75 65-83 (272)
118 3h4m_A Proteasome-activating n 95.2 0.15 5.3E-06 49.2 12.1 56 15-73 11-68 (285)
119 1w4r_A Thymidine kinase; type 95.1 0.045 1.5E-06 49.4 7.2 39 55-102 19-57 (195)
120 2zpa_A Uncharacterized protein 95.1 0.021 7E-07 61.8 5.8 59 41-111 175-235 (671)
121 3u61_B DNA polymerase accessor 95.1 0.12 4.2E-06 51.0 11.3 45 15-75 20-67 (324)
122 2z4s_A Chromosomal replication 94.8 0.24 8.1E-06 51.3 12.8 30 169-198 194-224 (440)
123 3e2i_A Thymidine kinase; Zn-bi 94.8 0.076 2.6E-06 48.7 7.9 39 56-103 28-66 (219)
124 1a5t_A Delta prime, HOLB; zinc 94.6 0.16 5.5E-06 50.5 10.5 40 42-82 3-49 (334)
125 2orv_A Thymidine kinase; TP4A 94.5 0.072 2.5E-06 49.5 7.0 40 55-103 18-57 (234)
126 2p65_A Hypothetical protein PF 94.4 0.41 1.4E-05 42.3 12.0 20 56-75 43-62 (187)
127 2chg_A Replication factor C sm 94.4 0.62 2.1E-05 42.4 13.6 17 57-73 39-55 (226)
128 2w58_A DNAI, primosome compone 94.3 0.22 7.4E-06 45.3 10.0 24 57-81 55-78 (202)
129 3eie_A Vacuolar protein sortin 94.2 0.13 4.3E-06 51.0 8.8 54 15-75 12-70 (322)
130 3bos_A Putative DNA replicatio 94.2 0.095 3.2E-06 48.9 7.5 20 55-74 51-70 (242)
131 1sxj_E Activator 1 40 kDa subu 93.8 0.38 1.3E-05 47.9 11.6 47 15-74 8-54 (354)
132 1gm5_A RECG; helicase, replica 93.8 0.2 6.9E-06 55.6 10.2 82 319-413 417-499 (780)
133 1jbk_A CLPB protein; beta barr 93.6 0.72 2.5E-05 40.8 12.0 19 56-74 43-61 (195)
134 3kl4_A SRP54, signal recogniti 93.3 0.32 1.1E-05 49.9 10.0 52 168-234 178-232 (433)
135 2qby_B CDC6 homolog 3, cell di 93.3 0.42 1.4E-05 48.2 10.9 19 56-74 45-63 (384)
136 2v1u_A Cell division control p 92.9 0.47 1.6E-05 47.7 10.7 20 55-74 43-62 (387)
137 2qby_A CDC6 homolog 1, cell di 92.6 1.1 3.7E-05 44.9 12.9 25 56-81 45-69 (386)
138 1fnn_A CDC6P, cell division co 92.6 0.27 9.2E-06 49.7 8.2 23 58-81 46-68 (389)
139 2qz4_A Paraplegin; AAA+, SPG7, 92.3 1.1 3.8E-05 42.2 11.8 54 18-74 3-57 (262)
140 1g5t_A COB(I)alamin adenosyltr 92.1 0.27 9.4E-06 44.4 6.6 35 56-99 28-62 (196)
141 2dr3_A UPF0273 protein PH0284; 92.0 1.1 3.9E-05 41.6 11.4 50 55-114 22-71 (247)
142 3pfi_A Holliday junction ATP-d 92.0 0.52 1.8E-05 46.7 9.3 48 15-75 23-74 (338)
143 3vfd_A Spastin; ATPase, microt 91.9 0.69 2.3E-05 46.9 10.3 20 56-75 148-167 (389)
144 3hu3_A Transitional endoplasmi 91.7 0.97 3.3E-05 47.3 11.4 56 16-74 199-256 (489)
145 2qp9_X Vacuolar protein sortin 91.5 0.45 1.5E-05 47.7 8.2 55 17-75 47-103 (355)
146 3d8b_A Fidgetin-like protein 1 91.3 1.4 4.9E-05 43.9 11.8 20 56-75 117-136 (357)
147 3pvs_A Replication-associated 91.0 0.32 1.1E-05 50.3 6.8 17 58-74 52-68 (447)
148 3hjh_A Transcription-repair-co 90.5 0.31 1.1E-05 50.9 6.1 51 55-117 13-63 (483)
149 1iqp_A RFCS; clamp loader, ext 90.1 1.5 5.1E-05 42.8 10.6 17 58-74 48-64 (327)
150 1njg_A DNA polymerase III subu 90.1 9.1 0.00031 34.7 15.7 16 58-73 47-62 (250)
151 2l8b_A Protein TRAI, DNA helic 90.0 0.86 2.9E-05 40.4 7.5 62 42-111 35-98 (189)
152 2w0m_A SSO2452; RECA, SSPF, un 90.0 0.66 2.2E-05 42.8 7.4 21 55-75 22-42 (235)
153 2q6t_A DNAB replication FORK h 89.8 1.3 4.5E-05 45.7 10.3 115 55-184 199-325 (444)
154 3dm5_A SRP54, signal recogniti 89.8 1.9 6.6E-05 44.2 11.1 40 58-106 102-143 (443)
155 2r6a_A DNAB helicase, replicat 89.6 1.6 5.5E-05 45.2 10.7 129 55-198 202-347 (454)
156 2gno_A DNA polymerase III, gam 89.6 2.8 9.7E-05 40.7 11.8 28 168-199 81-108 (305)
157 3oiy_A Reverse gyrase helicase 89.4 1.3 4.6E-05 45.0 9.8 83 317-413 62-148 (414)
158 2eyq_A TRCF, transcription-rep 89.3 1.5 5.2E-05 51.0 11.2 80 318-410 651-731 (1151)
159 4ddu_A Reverse gyrase; topoiso 89.0 1.1 3.8E-05 51.9 9.7 97 299-412 103-204 (1104)
160 2ehv_A Hypothetical protein PH 88.8 0.89 3.1E-05 42.5 7.5 31 169-199 135-170 (251)
161 1t6n_A Probable ATP-dependent 88.6 3.4 0.00012 37.6 11.3 77 319-410 82-164 (220)
162 1sxj_A Activator 1 95 kDa subu 88.3 1.4 4.8E-05 46.5 9.3 55 15-75 33-96 (516)
163 1sxj_B Activator 1 37 kDa subu 88.1 2.2 7.5E-05 41.4 10.1 18 58-75 44-61 (323)
164 3co5_A Putative two-component 88.0 0.29 9.8E-06 41.8 3.0 21 53-73 24-44 (143)
165 3n70_A Transport activator; si 87.8 0.33 1.1E-05 41.5 3.3 20 54-73 22-41 (145)
166 1n0w_A DNA repair protein RAD5 87.0 1.2 4.2E-05 41.3 7.2 25 55-79 23-47 (243)
167 1vec_A ATP-dependent RNA helic 86.5 4.4 0.00015 36.3 10.5 94 301-410 52-152 (206)
168 3bor_A Human initiation factor 86.4 2.5 8.7E-05 39.2 8.9 77 318-410 97-179 (237)
169 4b4t_M 26S protease regulatory 86.2 0.28 9.6E-06 50.3 2.3 57 16-75 176-234 (434)
170 2oxc_A Probable ATP-dependent 86.0 3 0.0001 38.4 9.2 94 300-410 72-172 (230)
171 3ber_A Probable ATP-dependent 85.7 3.8 0.00013 38.3 9.9 94 300-410 91-192 (249)
172 2cvh_A DNA repair and recombin 85.6 2.3 7.8E-05 38.7 8.1 24 55-78 19-42 (220)
173 1jr3_A DNA polymerase III subu 85.4 13 0.00045 36.7 14.4 18 58-75 40-57 (373)
174 2fna_A Conserved hypothetical 85.2 27 0.00093 33.8 16.6 17 57-73 31-47 (357)
175 3cmu_A Protein RECA, recombina 84.9 1.6 5.6E-05 53.1 8.2 46 50-104 1415-1466(2050)
176 3m6a_A ATP-dependent protease 84.7 1.2 4.2E-05 47.2 6.5 19 55-73 107-125 (543)
177 2pl3_A Probable ATP-dependent 84.0 4.4 0.00015 37.3 9.4 75 318-410 96-177 (236)
178 2gxq_A Heat resistant RNA depe 83.6 7.8 0.00027 34.6 10.7 93 299-410 48-150 (207)
179 1qde_A EIF4A, translation init 83.6 3.4 0.00012 37.7 8.3 94 299-410 61-161 (224)
180 3fe2_A Probable ATP-dependent 83.0 5.1 0.00017 37.2 9.4 76 318-410 101-182 (242)
181 4b4t_J 26S protease regulatory 82.6 0.4 1.4E-05 48.6 1.4 57 16-75 143-201 (405)
182 1w5s_A Origin recognition comp 82.6 3.2 0.00011 41.9 8.4 18 57-74 51-70 (412)
183 1e9r_A Conjugal transfer prote 81.8 0.9 3.1E-05 46.8 3.9 44 55-107 52-95 (437)
184 4a1f_A DNAB helicase, replicat 81.7 5.4 0.00018 39.3 9.2 49 55-113 45-93 (338)
185 3iuy_A Probable ATP-dependent 81.4 6.9 0.00024 35.7 9.6 75 318-410 93-173 (228)
186 3ly5_A ATP-dependent RNA helic 81.4 9.1 0.00031 36.0 10.6 76 318-410 125-207 (262)
187 1xti_A Probable ATP-dependent 81.2 9.5 0.00033 37.9 11.3 96 300-410 56-158 (391)
188 3nwn_A Kinesin-like protein KI 80.7 1 3.4E-05 44.9 3.6 24 50-73 97-122 (359)
189 2qgz_A Helicase loader, putati 80.3 2.5 8.6E-05 41.2 6.3 20 56-75 152-171 (308)
190 2p6n_A ATP-dependent RNA helic 80.2 17 0.00057 32.3 11.4 71 93-175 54-128 (191)
191 3cf0_A Transitional endoplasmi 79.3 1.1 3.6E-05 43.7 3.2 57 16-74 10-67 (301)
192 3fmo_B ATP-dependent RNA helic 79.1 3.6 0.00012 39.8 7.0 92 300-410 142-241 (300)
193 1bg2_A Kinesin; motor protein, 79.0 1.3 4.5E-05 43.5 3.8 24 50-73 70-95 (325)
194 3io5_A Recombination and repai 78.9 1.5 5.3E-05 42.7 4.1 41 58-105 30-70 (333)
195 4b4t_H 26S protease regulatory 78.7 0.91 3.1E-05 46.7 2.6 56 17-75 205-262 (467)
196 3dc4_A Kinesin-like protein NO 78.6 1.2 4.3E-05 44.0 3.5 23 51-73 88-112 (344)
197 4b4t_L 26S protease subunit RP 78.4 0.84 2.9E-05 46.8 2.2 57 16-75 176-234 (437)
198 1v8k_A Kinesin-like protein KI 78.4 1.3 4.5E-05 44.8 3.6 25 50-74 147-173 (410)
199 3t0q_A AGR253WP; kinesin, alph 78.0 1.4 4.9E-05 43.7 3.7 26 49-74 77-104 (349)
200 4etp_A Kinesin-like protein KA 77.8 1.4 4.8E-05 44.7 3.6 26 49-74 132-159 (403)
201 2vvg_A Kinesin-2; motor protei 77.8 1.5 5.1E-05 43.5 3.8 23 51-73 83-107 (350)
202 2y65_A Kinesin, kinesin heavy 77.6 1.5 5.2E-05 43.8 3.8 23 51-73 78-102 (365)
203 1f9v_A Kinesin-like protein KA 77.2 1.3 4.5E-05 43.9 3.1 26 49-74 76-103 (347)
204 1goj_A Kinesin, kinesin heavy 77.1 1.6 5.4E-05 43.4 3.8 23 51-73 74-98 (355)
205 2h58_A Kinesin-like protein KI 77.1 1.6 5.5E-05 42.9 3.8 25 49-73 72-98 (330)
206 3b6u_A Kinesin-like protein KI 77.1 1.5 5.2E-05 43.8 3.6 24 50-73 94-119 (372)
207 2zfi_A Kinesin-like protein KI 77.0 1.6 5.5E-05 43.6 3.8 24 50-73 82-107 (366)
208 4a14_A Kinesin, kinesin-like p 77.0 1.6 5.5E-05 43.2 3.8 24 50-73 76-101 (344)
209 2hjv_A ATP-dependent RNA helic 76.9 16 0.00055 31.3 10.0 73 93-177 35-111 (163)
210 3lre_A Kinesin-like protein KI 76.9 1.6 5.6E-05 43.4 3.8 23 51-73 99-123 (355)
211 2nr8_A Kinesin-like protein KI 76.9 1.6 5.3E-05 43.6 3.6 24 50-73 96-121 (358)
212 4b4t_I 26S protease regulatory 76.9 0.94 3.2E-05 46.1 2.0 57 16-75 177-235 (437)
213 1t5c_A CENP-E protein, centrom 76.7 1.6 5.4E-05 43.3 3.6 24 50-73 70-95 (349)
214 3pxi_A Negative regulator of g 76.7 2.5 8.6E-05 46.9 5.7 18 58-75 523-540 (758)
215 1x88_A Kinesin-like protein KI 76.6 1.5 5.1E-05 43.7 3.4 24 50-73 81-106 (359)
216 3gbj_A KIF13B protein; kinesin 76.5 1.6 5.5E-05 43.4 3.6 24 50-73 85-110 (354)
217 2heh_A KIF2C protein; kinesin, 76.4 1.6 5.5E-05 43.8 3.6 25 50-74 127-153 (387)
218 4b4t_K 26S protease regulatory 76.4 1.1 3.9E-05 45.7 2.5 56 17-75 168-225 (428)
219 1fuu_A Yeast initiation factor 76.1 12 0.0004 37.2 10.2 92 301-410 70-168 (394)
220 3nbx_X ATPase RAVA; AAA+ ATPas 75.8 3 0.0001 43.6 5.6 36 38-73 23-58 (500)
221 2wbe_C Bipolar kinesin KRP-130 75.8 1.6 5.6E-05 43.7 3.4 23 51-73 94-118 (373)
222 3u06_A Protein claret segregat 75.6 1.7 5.7E-05 44.2 3.5 25 49-73 130-156 (412)
223 1wrb_A DJVLGB; RNA helicase, D 75.5 8.7 0.0003 35.7 8.4 75 319-410 100-180 (253)
224 3cob_A Kinesin heavy chain-lik 75.4 1.5 5.2E-05 43.8 3.1 25 49-73 71-97 (369)
225 1qvr_A CLPB protein; coiled co 75.3 5.3 0.00018 45.0 7.9 20 56-75 191-210 (854)
226 1xwi_A SKD1 protein; VPS4B, AA 75.0 0.87 3E-05 44.8 1.2 55 16-74 7-63 (322)
227 2owm_A Nckin3-434, related to 74.6 2 6.8E-05 44.1 3.8 23 51-73 130-154 (443)
228 3bfn_A Kinesin-like protein KI 74.5 1.8 6E-05 43.6 3.3 32 42-73 75-116 (388)
229 2rep_A Kinesin-like protein KI 74.4 1.8 6.3E-05 43.3 3.4 24 50-73 108-133 (376)
230 1fuk_A Eukaryotic initiation f 74.4 23 0.0008 30.2 10.4 73 93-177 30-106 (165)
231 2rb4_A ATP-dependent RNA helic 74.2 27 0.00094 30.1 10.9 71 93-175 34-108 (175)
232 2zts_A Putative uncharacterize 73.7 2.4 8.2E-05 39.4 3.9 51 55-114 29-79 (251)
233 1hv8_A Putative ATP-dependent 73.6 20 0.00069 34.9 11.1 94 299-410 54-153 (367)
234 1p9r_A General secretion pathw 73.6 4.2 0.00014 41.4 5.9 36 45-81 154-191 (418)
235 3i5x_A ATP-dependent RNA helic 73.5 36 0.0012 35.8 13.7 96 67-177 319-418 (563)
236 1s2m_A Putative ATP-dependent 73.4 16 0.00055 36.4 10.4 95 300-411 69-170 (400)
237 2bjv_A PSP operon transcriptio 73.4 2 6.8E-05 40.7 3.3 19 55-73 28-46 (265)
238 1oyw_A RECQ helicase, ATP-depe 73.2 6.6 0.00022 41.4 7.5 59 319-394 65-123 (523)
239 3hws_A ATP-dependent CLP prote 73.1 3.8 0.00013 40.8 5.5 21 55-75 50-70 (363)
240 2r44_A Uncharacterized protein 73.1 2.1 7.2E-05 42.0 3.5 24 50-73 40-63 (331)
241 2db3_A ATP-dependent RNA helic 73.0 14 0.00046 37.8 9.8 75 319-410 129-209 (434)
242 3lda_A DNA repair protein RAD5 72.8 18 0.00062 36.4 10.4 24 56-79 178-201 (400)
243 2j0s_A ATP-dependent RNA helic 72.7 19 0.00065 36.0 10.8 94 300-410 85-185 (410)
244 2x8a_A Nuclear valosin-contain 72.7 0.67 2.3E-05 44.5 -0.3 54 16-73 5-61 (274)
245 1ry6_A Internal kinesin; kines 72.6 2.2 7.6E-05 42.5 3.5 20 55-74 82-103 (360)
246 3eaq_A Heat resistant RNA depe 72.3 24 0.00081 31.8 10.3 71 93-175 31-105 (212)
247 2v1x_A ATP-dependent DNA helic 72.2 6.9 0.00024 41.9 7.5 59 319-394 84-144 (591)
248 4ag6_A VIRB4 ATPase, type IV s 72.1 3.1 0.00011 42.0 4.6 42 55-105 34-75 (392)
249 3cmw_A Protein RECA, recombina 71.8 3.9 0.00013 49.1 5.8 92 56-183 1431-1523(1706)
250 1u0j_A DNA replication protein 71.0 6.3 0.00022 37.3 6.1 45 27-75 73-123 (267)
251 1w36_B RECB, exodeoxyribonucle 70.9 6.1 0.00021 46.3 7.2 63 55-118 16-81 (1180)
252 1gku_B Reverse gyrase, TOP-RG; 70.8 11 0.00038 43.4 9.3 95 299-410 81-181 (1054)
253 1ojl_A Transcriptional regulat 70.7 2.2 7.6E-05 41.4 3.0 19 55-73 24-42 (304)
254 3jvv_A Twitching mobility prot 70.7 3.3 0.00011 41.3 4.2 26 55-81 122-147 (356)
255 3sqw_A ATP-dependent RNA helic 70.1 45 0.0015 35.3 13.4 78 92-178 287-368 (579)
256 1tue_A Replication protein E1; 70.1 4.7 0.00016 36.6 4.7 49 28-80 29-81 (212)
257 2i4i_A ATP-dependent RNA helic 70.0 21 0.00071 35.7 10.4 74 320-410 102-181 (417)
258 2oap_1 GSPE-2, type II secreti 69.2 3.8 0.00013 43.0 4.6 31 42-72 245-276 (511)
259 1ofh_A ATP-dependent HSL prote 69.0 6.3 0.00021 37.9 5.9 19 56-74 50-68 (310)
260 1q0u_A Bstdead; DEAD protein, 68.8 6.5 0.00022 35.7 5.6 97 301-410 53-156 (219)
261 1t5i_A C_terminal domain of A 68.4 29 0.00098 30.0 9.6 73 93-177 31-107 (172)
262 2ffh_A Protein (FFH); SRP54, s 67.7 26 0.00088 35.6 10.2 20 57-76 99-118 (425)
263 2r62_A Cell division protease 67.5 1.2 4.2E-05 42.2 0.3 55 16-75 6-63 (268)
264 3syl_A Protein CBBX; photosynt 67.4 2.2 7.6E-05 41.3 2.2 19 57-75 68-86 (309)
265 3eiq_A Eukaryotic initiation f 66.9 23 0.00077 35.4 9.9 94 301-410 89-189 (414)
266 3bh0_A DNAB-like replicative h 66.7 9.4 0.00032 37.1 6.6 51 55-115 67-117 (315)
267 1cr0_A DNA primase/helicase; R 66.1 5.2 0.00018 38.4 4.6 21 55-75 34-54 (296)
268 3b9p_A CG5977-PA, isoform A; A 65.8 2.6 8.9E-05 40.6 2.3 54 17-74 17-72 (297)
269 1wp9_A ATP-dependent RNA helic 65.2 20 0.00068 36.5 9.2 92 300-410 34-131 (494)
270 3dkp_A Probable ATP-dependent 65.2 8.6 0.00029 35.5 5.8 77 318-410 97-181 (245)
271 2zan_A Vacuolar protein sortin 64.1 2.1 7.2E-05 44.2 1.3 54 17-74 130-185 (444)
272 1kgd_A CASK, peripheral plasma 63.7 3.3 0.00011 36.5 2.4 20 54-73 3-22 (180)
273 4a2p_A RIG-I, retinoic acid in 63.7 21 0.00073 37.3 9.3 75 319-410 55-136 (556)
274 2eyu_A Twitching motility prot 63.5 3.4 0.00012 39.1 2.6 21 53-73 22-42 (261)
275 3uk6_A RUVB-like 2; hexameric 63.5 2.9 9.8E-05 41.6 2.2 20 56-75 70-89 (368)
276 3iij_A Coilin-interacting nucl 63.4 2.8 9.4E-05 36.9 1.8 21 54-74 9-29 (180)
277 2qmh_A HPR kinase/phosphorylas 62.8 3.5 0.00012 37.2 2.3 19 55-73 33-51 (205)
278 1lv7_A FTSH; alpha/beta domain 62.3 3.2 0.00011 38.9 2.2 56 16-74 7-63 (257)
279 3vaa_A Shikimate kinase, SK; s 62.2 3.6 0.00012 36.9 2.4 20 55-74 24-43 (199)
280 3a8t_A Adenylate isopentenyltr 62.0 3.8 0.00013 40.3 2.6 17 57-73 41-57 (339)
281 2r8r_A Sensor protein; KDPD, P 61.7 8.2 0.00028 35.5 4.7 24 58-81 8-31 (228)
282 2r2a_A Uncharacterized protein 61.7 4.9 0.00017 36.2 3.2 21 58-78 7-27 (199)
283 3exa_A TRNA delta(2)-isopenten 61.7 3.9 0.00013 39.8 2.6 17 57-73 4-20 (322)
284 3t15_A Ribulose bisphosphate c 61.7 3.1 0.00011 40.1 1.9 18 57-74 37-54 (293)
285 1yks_A Genome polyprotein [con 61.6 9.2 0.00031 39.2 5.6 68 93-174 177-245 (440)
286 3b85_A Phosphate starvation-in 61.4 7.4 0.00025 35.3 4.4 35 39-73 5-39 (208)
287 3b6e_A Interferon-induced heli 61.2 15 0.0005 32.8 6.5 59 319-395 82-141 (216)
288 1qhx_A CPT, protein (chloramph 61.1 3.9 0.00013 35.7 2.4 18 56-73 3-20 (178)
289 3trf_A Shikimate kinase, SK; a 61.1 3.9 0.00013 36.0 2.4 20 56-75 5-24 (185)
290 3foz_A TRNA delta(2)-isopenten 60.7 4.4 0.00015 39.3 2.8 16 58-73 12-27 (316)
291 2gza_A Type IV secretion syste 60.7 5.1 0.00017 39.9 3.4 18 54-71 173-190 (361)
292 2v6i_A RNA helicase; membrane, 60.2 10 0.00035 38.7 5.7 53 93-151 171-224 (431)
293 3fht_A ATP-dependent RNA helic 60.2 31 0.0011 34.2 9.4 71 93-175 266-340 (412)
294 2qor_A Guanylate kinase; phosp 60.2 3.9 0.00013 36.8 2.3 21 53-73 9-29 (204)
295 3u4q_B ATP-dependent helicase/ 60.0 7 0.00024 45.7 4.9 39 60-104 5-43 (1166)
296 2ius_A DNA translocase FTSK; n 59.7 13 0.00043 38.9 6.2 27 56-82 167-193 (512)
297 1u94_A RECA protein, recombina 58.8 8 0.00027 38.4 4.4 38 56-102 63-100 (356)
298 2pt7_A CAG-ALFA; ATPase, prote 58.7 4.3 0.00015 39.9 2.4 18 54-71 169-186 (330)
299 4h1g_A Maltose binding protein 58.6 5.2 0.00018 44.0 3.3 25 49-73 454-480 (715)
300 3lw7_A Adenylate kinase relate 58.4 4.2 0.00014 35.1 2.1 16 58-73 3-18 (179)
301 2iut_A DNA translocase FTSK; n 58.3 14 0.00047 39.1 6.3 41 57-102 215-255 (574)
302 2c9o_A RUVB-like 1; hexameric 58.2 5.2 0.00018 41.3 3.0 20 56-75 63-82 (456)
303 1um8_A ATP-dependent CLP prote 58.1 4.6 0.00016 40.4 2.5 19 56-74 72-90 (376)
304 2d7d_A Uvrabc system protein B 58.0 31 0.0011 37.4 9.3 77 92-180 444-524 (661)
305 2j41_A Guanylate kinase; GMP, 57.5 4.8 0.00016 36.1 2.4 20 54-73 4-23 (207)
306 1lvg_A Guanylate kinase, GMP k 57.3 4.9 0.00017 36.1 2.4 19 55-73 3-21 (198)
307 2px0_A Flagellar biosynthesis 57.2 11 0.00037 36.4 4.9 22 56-77 105-126 (296)
308 3bgw_A DNAB-like replicative h 56.9 9.5 0.00032 39.2 4.7 49 55-113 196-244 (444)
309 2jgn_A DBX, DDX3, ATP-dependen 56.8 21 0.00073 31.4 6.5 72 92-175 45-120 (185)
310 4fcw_A Chaperone protein CLPB; 56.7 5.4 0.00018 38.5 2.7 19 57-75 48-66 (311)
311 1y63_A LMAJ004144AAA protein; 56.7 5.2 0.00018 35.3 2.4 19 55-73 9-27 (184)
312 3ney_A 55 kDa erythrocyte memb 56.6 4.4 0.00015 36.5 1.9 20 54-73 17-36 (197)
313 1kht_A Adenylate kinase; phosp 56.6 5.1 0.00017 35.3 2.3 18 56-73 3-20 (192)
314 3tbk_A RIG-I helicase domain; 56.1 19 0.00066 37.6 7.2 95 299-410 29-133 (555)
315 2ze6_A Isopentenyl transferase 56.1 4.8 0.00016 37.8 2.2 16 58-73 3-18 (253)
316 3tau_A Guanylate kinase, GMP k 56.1 6.7 0.00023 35.4 3.1 19 55-73 7-25 (208)
317 2zr9_A Protein RECA, recombina 56.1 10 0.00035 37.5 4.7 38 56-102 61-98 (349)
318 2z43_A DNA repair and recombin 55.8 11 0.00036 36.9 4.7 56 56-114 107-163 (324)
319 1xjc_A MOBB protein homolog; s 55.7 13 0.00044 32.5 4.7 24 58-82 6-29 (169)
320 2ewv_A Twitching motility prot 55.3 5.3 0.00018 40.0 2.5 20 54-73 134-153 (372)
321 1xp8_A RECA protein, recombina 55.2 9.4 0.00032 38.0 4.2 45 49-102 61-111 (366)
322 3pey_A ATP-dependent RNA helic 55.0 50 0.0017 32.4 9.8 76 92-179 242-321 (395)
323 2chq_A Replication factor C sm 54.9 18 0.00061 34.7 6.2 47 15-75 11-57 (319)
324 2z0m_A 337AA long hypothetical 54.5 48 0.0017 31.6 9.4 74 319-410 56-135 (337)
325 4a2q_A RIG-I, retinoic acid in 54.2 27 0.00094 38.7 8.3 95 299-410 273-377 (797)
326 1tf7_A KAIC; homohexamer, hexa 54.1 19 0.00065 37.8 6.6 31 168-199 370-405 (525)
327 1kag_A SKI, shikimate kinase I 53.9 6.4 0.00022 34.0 2.5 18 56-73 4-21 (173)
328 1zp6_A Hypothetical protein AT 53.5 4.4 0.00015 35.8 1.4 19 54-72 7-25 (191)
329 4akg_A Glutathione S-transfera 53.5 11 0.00038 47.5 5.3 47 27-75 892-942 (2695)
330 1ly1_A Polynucleotide kinase; 53.4 5.8 0.0002 34.5 2.2 16 58-73 4-19 (181)
331 1hqc_A RUVB; extended AAA-ATPa 53.4 4.3 0.00015 39.4 1.4 51 15-74 6-56 (324)
332 3crm_A TRNA delta(2)-isopenten 52.9 7.1 0.00024 38.1 2.8 16 58-73 7-22 (323)
333 1g8p_A Magnesium-chelatase 38 52.8 4 0.00014 40.2 1.0 19 56-74 45-63 (350)
334 1sxj_D Activator 1 41 kDa subu 52.6 11 0.00037 37.0 4.2 18 57-74 59-76 (353)
335 1ex7_A Guanylate kinase; subst 52.5 5.6 0.00019 35.4 1.9 16 57-72 2-17 (186)
336 2xau_A PRE-mRNA-splicing facto 52.1 57 0.002 36.0 10.3 76 93-175 303-393 (773)
337 3tr0_A Guanylate kinase, GMP k 51.9 6.8 0.00023 35.0 2.4 19 55-73 6-24 (205)
338 3d3q_A TRNA delta(2)-isopenten 51.7 7.7 0.00026 38.2 2.9 16 58-73 9-24 (340)
339 1ixz_A ATP-dependent metallopr 51.6 6.2 0.00021 36.8 2.2 53 16-73 11-66 (254)
340 3kb2_A SPBC2 prophage-derived 51.2 6.7 0.00023 33.8 2.2 16 58-73 3-18 (173)
341 3cf2_A TER ATPase, transitiona 51.1 5.1 0.00018 44.4 1.6 55 17-74 473-529 (806)
342 3cm0_A Adenylate kinase; ATP-b 50.9 5.2 0.00018 35.2 1.4 20 55-74 3-22 (186)
343 3f9v_A Minichromosome maintena 50.8 7.3 0.00025 41.7 2.8 15 58-72 329-343 (595)
344 3a00_A Guanylate kinase, GMP k 50.8 7.8 0.00027 34.2 2.6 16 57-72 2-17 (186)
345 1z6g_A Guanylate kinase; struc 50.1 8.2 0.00028 35.2 2.6 19 54-72 21-39 (218)
346 2oca_A DAR protein, ATP-depend 50.1 30 0.001 35.9 7.4 91 299-410 138-231 (510)
347 3pxg_A Negative regulator of g 50.0 9.1 0.00031 39.6 3.3 20 56-75 201-220 (468)
348 3nwj_A ATSK2; P loop, shikimat 49.8 8.4 0.00029 36.1 2.7 21 54-74 46-66 (250)
349 3eph_A TRNA isopentenyltransfe 49.5 9.5 0.00033 38.4 3.2 16 58-73 4-19 (409)
350 4dzz_A Plasmid partitioning pr 49.1 35 0.0012 30.0 6.8 31 145-179 55-85 (206)
351 1tev_A UMP-CMP kinase; ploop, 49.0 6.7 0.00023 34.5 1.9 19 56-74 3-21 (196)
352 1knq_A Gluconate kinase; ALFA/ 48.6 7 0.00024 34.0 1.8 18 56-73 8-25 (175)
353 4eun_A Thermoresistant glucoki 48.5 8.4 0.00029 34.4 2.4 19 55-73 28-46 (200)
354 3hr8_A Protein RECA; alpha and 48.3 13 0.00045 36.8 4.0 46 49-103 48-99 (356)
355 4gp7_A Metallophosphoesterase; 47.7 7.4 0.00025 33.9 1.9 20 55-74 8-27 (171)
356 2i1q_A DNA repair and recombin 47.2 15 0.0005 35.7 4.1 24 56-79 98-121 (322)
357 1m7g_A Adenylylsulfate kinase; 47.1 10 0.00035 34.2 2.8 31 42-73 12-42 (211)
358 1g41_A Heat shock protein HSLU 47.1 8.9 0.0003 39.3 2.6 18 56-73 50-67 (444)
359 2cdn_A Adenylate kinase; phosp 47.1 7.5 0.00026 34.7 1.9 18 56-73 20-37 (201)
360 2c95_A Adenylate kinase 1; tra 46.9 9.1 0.00031 33.8 2.4 20 54-73 7-26 (196)
361 1q57_A DNA primase/helicase; d 46.7 14 0.00048 38.5 4.2 50 55-113 241-290 (503)
362 2wv9_A Flavivirin protease NS2 46.5 18 0.00062 39.3 5.1 68 93-174 410-478 (673)
363 2v54_A DTMP kinase, thymidylat 46.2 8.6 0.00029 34.2 2.1 19 55-73 3-21 (204)
364 1iy2_A ATP-dependent metallopr 46.2 8.4 0.00029 36.5 2.2 53 16-73 35-90 (278)
365 3i32_A Heat resistant RNA depe 46.1 74 0.0025 30.4 8.9 71 93-175 28-102 (300)
366 2ce7_A Cell division protein F 45.4 8.5 0.00029 39.9 2.2 55 17-74 12-67 (476)
367 2fsf_A Preprotein translocase 45.4 44 0.0015 37.0 7.8 72 319-409 115-199 (853)
368 4gl2_A Interferon-induced heli 45.1 10 0.00035 41.3 2.9 73 320-410 57-142 (699)
369 1tf5_A Preprotein translocase 45.1 53 0.0018 36.4 8.4 72 319-409 124-208 (844)
370 3vkg_A Dynein heavy chain, cyt 45.1 17 0.00058 46.6 5.0 47 27-75 875-925 (3245)
371 2rhm_A Putative kinase; P-loop 44.9 8.3 0.00028 33.9 1.8 18 56-73 5-22 (193)
372 1np6_A Molybdopterin-guanine d 44.5 15 0.0005 32.2 3.3 23 58-81 8-30 (174)
373 1znw_A Guanylate kinase, GMP k 44.3 11 0.00037 33.9 2.5 22 52-73 16-37 (207)
374 1s96_A Guanylate kinase, GMP k 44.2 11 0.00036 34.5 2.4 20 53-72 13-32 (219)
375 1vma_A Cell division protein F 44.2 20 0.00069 34.6 4.5 18 58-75 106-123 (306)
376 2bwj_A Adenylate kinase 5; pho 44.1 11 0.00038 33.3 2.5 19 55-73 11-29 (199)
377 1f2t_A RAD50 ABC-ATPase; DNA d 43.8 10 0.00036 32.1 2.2 15 58-72 25-39 (149)
378 3t61_A Gluconokinase; PSI-biol 43.7 9.9 0.00034 33.9 2.1 17 57-73 19-35 (202)
379 1v5w_A DMC1, meiotic recombina 43.7 14 0.00047 36.4 3.3 45 56-103 122-166 (343)
380 1zuh_A Shikimate kinase; alpha 43.6 11 0.00036 32.5 2.2 19 57-75 8-26 (168)
381 4a2w_A RIG-I, retinoic acid in 43.5 32 0.0011 39.0 6.7 95 299-410 273-377 (936)
382 1via_A Shikimate kinase; struc 43.5 11 0.00038 32.7 2.4 16 58-73 6-21 (175)
383 1rj9_A FTSY, signal recognitio 43.4 23 0.0008 34.1 4.8 19 56-74 102-120 (304)
384 1aky_A Adenylate kinase; ATP:A 43.3 11 0.00038 34.1 2.5 19 56-74 4-22 (220)
385 2iyv_A Shikimate kinase, SK; t 43.3 12 0.00041 32.7 2.6 18 57-74 3-20 (184)
386 2plr_A DTMP kinase, probable t 43.1 9.4 0.00032 34.1 1.9 19 55-73 3-21 (213)
387 1in4_A RUVB, holliday junction 43.1 13 0.00045 36.3 3.1 19 57-75 52-70 (334)
388 3lnc_A Guanylate kinase, GMP k 43.0 8.9 0.00031 35.1 1.7 19 55-73 26-44 (231)
389 1e6c_A Shikimate kinase; phosp 42.6 12 0.00041 32.2 2.4 17 57-73 3-19 (173)
390 1zd8_A GTP:AMP phosphotransfer 42.2 11 0.00037 34.4 2.2 18 56-73 7-24 (227)
391 3ice_A Transcription terminati 42.1 53 0.0018 32.9 7.2 32 42-73 157-191 (422)
392 3fb4_A Adenylate kinase; psych 42.0 11 0.00038 34.0 2.2 18 58-75 2-19 (216)
393 3uie_A Adenylyl-sulfate kinase 42.0 10 0.00036 33.8 2.0 19 55-73 24-42 (200)
394 1nlf_A Regulatory protein REPA 41.9 12 0.0004 35.5 2.4 26 53-78 27-52 (279)
395 2l82_A Designed protein OR32; 41.9 81 0.0028 24.6 6.6 50 322-388 5-54 (162)
396 4f4c_A Multidrug resistance pr 41.8 67 0.0023 37.9 9.2 32 168-199 571-602 (1321)
397 3pxi_A Negative regulator of g 41.7 14 0.00047 40.9 3.3 20 56-75 201-220 (758)
398 2bdt_A BH3686; alpha-beta prot 41.7 11 0.00039 33.0 2.2 17 57-73 3-19 (189)
399 1gvn_B Zeta; postsegregational 41.5 9.8 0.00034 36.4 1.8 17 57-73 34-50 (287)
400 2vhj_A Ntpase P4, P4; non- hyd 41.5 12 0.00041 36.5 2.3 24 55-78 122-145 (331)
401 1sxj_C Activator 1 40 kDa subu 41.5 22 0.00075 34.7 4.4 17 59-75 49-65 (340)
402 2qt1_A Nicotinamide riboside k 41.4 6.8 0.00023 35.2 0.6 22 52-73 17-38 (207)
403 1qf9_A UMP/CMP kinase, protein 41.2 11 0.00037 33.0 2.0 16 58-73 8-23 (194)
404 2pez_A Bifunctional 3'-phospho 41.2 11 0.00037 32.8 1.9 19 55-73 4-22 (179)
405 1zu4_A FTSY; GTPase, signal re 41.1 24 0.00082 34.3 4.6 18 58-75 107-124 (320)
406 2ipc_A Preprotein translocase 41.0 49 0.0017 36.9 7.3 57 319-394 120-176 (997)
407 4akg_A Glutathione S-transfera 41.0 11 0.00037 47.7 2.4 21 53-73 1264-1284(2695)
408 3gk5_A Uncharacterized rhodane 40.9 34 0.0012 26.8 4.8 39 317-372 53-91 (108)
409 1nks_A Adenylate kinase; therm 40.8 11 0.00038 33.0 1.9 16 58-73 3-18 (194)
410 1zak_A Adenylate kinase; ATP:A 40.8 13 0.00044 33.8 2.4 19 56-74 5-23 (222)
411 1nkt_A Preprotein translocase 40.7 59 0.002 36.2 7.8 72 319-409 152-236 (922)
412 3dl0_A Adenylate kinase; phosp 40.5 12 0.00041 33.7 2.2 17 58-74 2-18 (216)
413 1c4o_A DNA nucleotide excision 39.9 1.7E+02 0.0057 31.6 11.5 103 292-400 31-144 (664)
414 2yvu_A Probable adenylyl-sulfa 39.9 12 0.0004 32.9 1.9 20 55-74 12-31 (186)
415 2f1r_A Molybdopterin-guanine d 39.7 14 0.00047 32.3 2.3 16 58-73 4-19 (171)
416 3fmp_B ATP-dependent RNA helic 39.7 40 0.0014 34.6 6.3 93 299-410 141-241 (479)
417 4a74_A DNA repair and recombin 39.5 12 0.0004 34.0 2.0 21 55-75 24-44 (231)
418 1ak2_A Adenylate kinase isoenz 39.4 14 0.00047 34.0 2.4 20 55-74 15-34 (233)
419 3tlx_A Adenylate kinase 2; str 39.4 15 0.0005 34.1 2.6 20 55-74 28-47 (243)
420 1ukz_A Uridylate kinase; trans 39.2 13 0.00044 33.1 2.2 16 58-73 17-32 (203)
421 3cmw_A Protein RECA, recombina 39.1 33 0.0011 41.3 6.1 39 56-103 34-72 (1706)
422 2pt5_A Shikimate kinase, SK; a 38.8 13 0.00046 31.7 2.1 16 58-73 2-17 (168)
423 3auy_A DNA double-strand break 38.7 12 0.00041 37.3 2.0 16 58-73 27-42 (371)
424 2jlq_A Serine protease subunit 38.4 39 0.0013 34.5 6.0 68 93-174 188-256 (451)
425 3qf7_A RAD50; ABC-ATPase, ATPa 38.4 13 0.00044 37.0 2.2 16 58-73 25-40 (365)
426 3c8u_A Fructokinase; YP_612366 38.4 11 0.00038 33.8 1.6 18 55-72 21-38 (208)
427 3k1j_A LON protease, ATP-depen 38.4 24 0.00082 37.7 4.4 23 51-73 55-77 (604)
428 1nij_A Hypothetical protein YJ 38.2 20 0.0007 34.7 3.5 14 59-72 7-20 (318)
429 1cke_A CK, MSSA, protein (cyti 38.1 14 0.00047 33.6 2.2 17 57-73 6-22 (227)
430 3kta_A Chromosome segregation 38.0 18 0.00061 31.5 2.8 16 58-73 28-43 (182)
431 3cmu_A Protein RECA, recombina 37.8 27 0.00092 42.8 5.0 46 55-110 1080-1125(2050)
432 3asz_A Uridine kinase; cytidin 37.8 12 0.00042 33.5 1.8 17 56-72 6-22 (211)
433 2wwf_A Thymidilate kinase, put 37.5 15 0.0005 32.9 2.2 19 55-73 9-27 (212)
434 3be4_A Adenylate kinase; malar 37.5 15 0.0005 33.3 2.2 18 56-73 5-22 (217)
435 2v9p_A Replication protein E1; 37.4 18 0.00061 35.0 2.9 18 55-72 125-142 (305)
436 2dhr_A FTSH; AAA+ protein, hex 37.3 14 0.00046 38.6 2.2 55 16-73 26-81 (499)
437 3tif_A Uncharacterized ABC tra 37.3 12 0.0004 34.7 1.5 17 55-71 30-46 (235)
438 3a4m_A L-seryl-tRNA(SEC) kinas 37.3 14 0.00049 34.6 2.2 18 510-527 239-256 (260)
439 2vli_A Antibiotic resistance p 37.1 12 0.0004 32.6 1.4 20 55-74 4-23 (183)
440 1nn5_A Similar to deoxythymidy 37.1 15 0.00052 32.8 2.3 19 55-73 8-26 (215)
441 2jaq_A Deoxyguanosine kinase; 37.0 15 0.0005 32.6 2.1 16 58-73 2-17 (205)
442 2if2_A Dephospho-COA kinase; a 36.7 14 0.00048 32.9 2.0 16 58-73 3-18 (204)
443 1ye8_A Protein THEP1, hypothet 36.5 20 0.00069 31.4 2.9 15 58-72 2-16 (178)
444 2i3b_A HCR-ntpase, human cance 36.5 23 0.00077 31.4 3.2 18 56-73 1-18 (189)
445 3bs4_A Uncharacterized protein 36.4 28 0.00095 32.7 4.0 52 55-116 20-71 (260)
446 2ykg_A Probable ATP-dependent 36.4 69 0.0024 34.6 7.9 74 320-410 62-142 (696)
447 2cbz_A Multidrug resistance-as 36.3 12 0.00042 34.6 1.5 17 55-71 30-46 (237)
448 2pbr_A DTMP kinase, thymidylat 36.2 15 0.00052 32.1 2.1 16 58-73 2-17 (195)
449 1jjv_A Dephospho-COA kinase; P 36.1 15 0.00052 32.7 2.1 16 58-73 4-19 (206)
450 2v26_A Myosin VI; calmodulin-b 35.9 43 0.0015 36.9 6.0 60 15-75 91-159 (784)
451 2o0a_A S.cerevisiae chromosome 35.9 38 0.0013 32.0 4.7 20 52-71 86-108 (298)
452 2p5t_B PEZT; postsegregational 35.8 12 0.00041 34.9 1.4 18 56-73 32-49 (253)
453 2z83_A Helicase/nucleoside tri 35.8 28 0.00094 35.8 4.3 53 93-151 190-243 (459)
454 3l9o_A ATP-dependent RNA helic 35.6 40 0.0014 39.0 5.9 81 300-410 210-296 (1108)
455 3iwh_A Rhodanese-like domain p 35.4 25 0.00087 27.5 3.0 37 318-371 55-91 (103)
456 1e4v_A Adenylate kinase; trans 35.2 15 0.00053 33.0 2.0 16 58-73 2-17 (214)
457 2v3c_C SRP54, signal recogniti 35.1 23 0.0008 36.0 3.5 20 58-77 101-120 (432)
458 2z0h_A DTMP kinase, thymidylat 34.9 17 0.00057 32.0 2.2 22 59-81 3-24 (197)
459 3cf2_A TER ATPase, transitiona 34.4 16 0.00054 40.5 2.2 57 14-73 197-255 (806)
460 1ypw_A Transitional endoplasmi 34.3 15 0.0005 41.0 1.9 19 55-73 237-255 (806)
461 1sgw_A Putative ABC transporte 34.3 15 0.0005 33.5 1.6 17 55-71 34-50 (214)
462 2xb4_A Adenylate kinase; ATP-b 34.1 17 0.00059 33.0 2.1 16 58-73 2-17 (223)
463 3foj_A Uncharacterized protein 34.0 30 0.001 26.7 3.2 38 318-372 55-92 (100)
464 1uf9_A TT1252 protein; P-loop, 33.9 16 0.00056 32.2 1.9 16 58-73 10-25 (203)
465 1wv9_A Rhodanese homolog TT165 33.9 33 0.0011 26.0 3.5 36 320-372 54-89 (94)
466 2whx_A Serine protease/ntpase/ 33.7 48 0.0016 35.5 5.8 68 93-174 355-423 (618)
467 3g5j_A Putative ATP/GTP bindin 33.6 48 0.0016 26.8 4.7 37 320-373 90-127 (134)
468 3hix_A ALR3790 protein; rhodan 33.4 32 0.0011 26.9 3.4 38 318-372 51-89 (106)
469 3vkg_A Dynein heavy chain, cyt 33.4 17 0.00057 46.7 2.4 20 53-72 1301-1320(3245)
470 3eme_A Rhodanese-like domain p 33.4 28 0.00096 27.0 3.0 37 318-371 55-91 (103)
471 4e22_A Cytidylate kinase; P-lo 33.4 19 0.00066 33.5 2.4 19 55-73 26-44 (252)
472 2bbw_A Adenylate kinase 4, AK4 33.4 19 0.00066 33.2 2.4 18 56-73 27-44 (246)
473 3sr0_A Adenylate kinase; phosp 33.4 19 0.00063 32.5 2.2 18 58-75 2-19 (206)
474 2pze_A Cystic fibrosis transme 33.2 15 0.0005 33.8 1.4 17 55-71 33-49 (229)
475 1r6b_X CLPA protein; AAA+, N-t 33.2 18 0.00061 40.0 2.4 19 56-74 207-225 (758)
476 2yhs_A FTSY, cell division pro 33.2 35 0.0012 35.3 4.4 19 57-75 294-312 (503)
477 2ghi_A Transport protein; mult 32.9 15 0.00051 34.5 1.5 17 55-71 45-61 (260)
478 3qks_A DNA double-strand break 32.8 19 0.00065 32.3 2.2 16 58-73 25-40 (203)
479 1qvr_A CLPB protein; coiled co 32.7 19 0.00064 40.5 2.5 17 58-74 590-606 (854)
480 1vht_A Dephospho-COA kinase; s 32.7 19 0.00064 32.5 2.1 17 57-73 5-21 (218)
481 3h1t_A Type I site-specific re 32.6 1.2E+02 0.004 32.1 8.7 81 92-179 438-527 (590)
482 1r6b_X CLPA protein; AAA+, N-t 32.5 17 0.00058 40.2 2.1 17 58-74 490-506 (758)
483 2w00_A HSDR, R.ECOR124I; ATP-b 32.3 1.8E+02 0.0063 33.1 10.6 27 92-118 536-562 (1038)
484 4anj_A Unconventional myosin-V 32.2 40 0.0014 38.4 5.1 66 15-82 95-169 (1052)
485 3nh6_A ATP-binding cassette SU 32.1 18 0.00063 34.9 2.0 17 55-71 79-95 (306)
486 1htw_A HI0065; nucleotide-bind 32.1 14 0.00049 31.7 1.1 17 55-71 32-48 (158)
487 3umf_A Adenylate kinase; rossm 31.9 20 0.00068 32.7 2.1 21 55-75 28-48 (217)
488 1rz3_A Hypothetical protein rb 31.6 19 0.00066 32.0 2.0 18 56-73 22-39 (201)
489 3b9q_A Chloroplast SRP recepto 31.4 23 0.00079 34.1 2.6 20 56-75 100-119 (302)
490 2pcj_A ABC transporter, lipopr 31.4 15 0.00052 33.6 1.2 17 55-71 29-45 (224)
491 3e70_C DPA, signal recognition 31.2 47 0.0016 32.3 4.9 18 56-73 129-146 (328)
492 1mv5_A LMRA, multidrug resista 30.9 14 0.00049 34.2 1.0 17 55-71 27-43 (243)
493 2grj_A Dephospho-COA kinase; T 30.9 22 0.00074 31.6 2.2 17 58-74 14-30 (192)
494 2h17_A ADP-ribosylation factor 30.8 14 0.00049 31.9 0.9 18 54-71 19-36 (181)
495 1ypw_A Transitional endoplasmi 30.7 8.2 0.00028 43.0 -0.9 54 17-73 473-528 (806)
496 1vp8_A Hypothetical protein AF 30.3 1.2E+02 0.0041 26.8 6.6 88 293-397 18-109 (201)
497 1odf_A YGR205W, hypothetical 3 30.2 22 0.00074 34.1 2.2 16 58-73 33-48 (290)
498 1lkx_A Myosin IE heavy chain; 30.2 46 0.0016 36.1 4.9 68 14-82 45-119 (697)
499 1g6h_A High-affinity branched- 30.2 20 0.00069 33.5 1.9 17 55-71 32-48 (257)
500 4ag6_A VIRB4 ATPase, type IV s 30.2 37 0.0013 33.9 4.0 30 170-199 263-295 (392)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9e-63 Score=521.92 Aligned_cols=360 Identities=32% Similarity=0.542 Sum_probs=316.3
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|++++|++.+++.|. .+||..|||+|+++||.++.|+|++++||||||||++|++|+++.+...... ....+.++|
T Consensus 56 ~~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~~l 133 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVN-KSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQVV 133 (434)
T ss_dssp CCGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCSEE
T ss_pred CChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCccEE
Confidence 47999999999999995 6899999999999999999999999999999999999999999998764321 123578899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
||+||||||.|+++.+.++... ..+.++.++||.....+...+..+++|+|+|||+|++++... .+.+.++++||+||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlDE 211 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLDE 211 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTT-SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEET
T ss_pred EEecCHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC-CcccccCCeEEEcc
Confidence 9999999999999999998763 346678899999988888888889999999999999999763 45678999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||+++++||...+..|+..+... ..+|+++||||++..+..++...+.+|..+.+....
T Consensus 212 ah~~~~~gf~~~~~~i~~~~~~~-------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-------- 270 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTHVTMR-------------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-------- 270 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHCTTSC-------------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT--------
T ss_pred HhhhhccCcHHHHHHHHHhcCCC-------------CCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc--------
Confidence 99999999999999999886421 278999999999999999999999998887765431
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
.....+.+.+..++...|...|..++... ..++||||++++.++.++.
T Consensus 271 ---------------------------~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-----~~~~lVF~~t~~~a~~l~~ 318 (434)
T 2db3_A 271 ---------------------------GACSDVKQTIYEVNKYAKRSKLIEILSEQ-----ADGTIVFVETKRGADFLAS 318 (434)
T ss_dssp ---------------------------CCCTTEEEEEEECCGGGHHHHHHHHHHHC-----CTTEEEECSSHHHHHHHHH
T ss_pred ---------------------------ccccccceEEEEeCcHHHHHHHHHHHHhC-----CCCEEEEEeCcHHHHHHHH
Confidence 12345677778888888999999888764 2459999999999999999
Q ss_pred hhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCCh
Q 007774 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (590)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~ 417 (590)
.|... ++.+..+||++++.+|..++++|++|+..|||||++++||+|+|+|++||+||+|.++
T Consensus 319 ~L~~~-----------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~ 381 (434)
T 2db3_A 319 FLSEK-----------------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKI 381 (434)
T ss_dssp HHHHT-----------------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSH
T ss_pred HHHhC-----------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCH
Confidence 99876 7789999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccccCCCCCccEEEEeCcc-chHHHHHH
Q 007774 418 TEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDL 451 (590)
Q Consensus 418 ~~yiqr~GRt~R~g~~g~~i~~l~~~-e~~~~~~l 451 (590)
.+|+||+|||||.|+.|.+++|+.|. +..++..+
T Consensus 382 ~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l 416 (434)
T 2db3_A 382 DDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL 416 (434)
T ss_dssp HHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHH
T ss_pred HHHHHHhcccccCCCCCEEEEEEeccccHHHHHHH
Confidence 99999999999999999999999975 44444433
No 2
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.9e-59 Score=514.73 Aligned_cols=447 Identities=27% Similarity=0.413 Sum_probs=346.8
Q ss_pred cCCccCCC----CCHHHHHHHHHhCCCCCCcHHHHHHHHHHh--cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCC
Q 007774 17 SCSFSSLG----LHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR 90 (590)
Q Consensus 17 ~~~f~~l~----l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il--~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~ 90 (590)
..+|+++. |++.++++| +.+||..|||+|.++|+.++ .|+|+++.||||||||++|++|+++.+..... ..
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~--~~ 92 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF--DS 92 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHH-HTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT--SS
T ss_pred CcCHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc--cc
Confidence 33566554 999999999 57899999999999999999 78899999999999999999999999876432 12
Q ss_pred CCCeeEEEEcCcHHHHHHHHHHHHHHHhh---cCCcceEEEEcCCchHHHHHHhc-CCCcEEEECChHHHHHHhccCCCC
Q 007774 91 SSGTFALVLVPTRELCLQVYEILHKLLHR---FHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFL 166 (590)
Q Consensus 91 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~ 166 (590)
..+.++|||+||++|+.|+++.+..+... .....+..+.||.........+. .+++|+|+|||+|++++.......
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 34678999999999999999999998752 33456777888888777766664 479999999999999997654456
Q ss_pred CCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecC
Q 007774 167 HTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (590)
Q Consensus 167 ~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 246 (590)
+..+++||+||||+++++||...+..|+..++..... ....+|+++||||+++.+..++...+.+|..+.+.
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~--------~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~ 244 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK--------SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS--------CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc--------cccCceEEEEeccCChHHHHHHHHHcCCCceEEEe
Confidence 6789999999999999999999999999988753211 11257999999999999999999888888766554
Q ss_pred CCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecC-CChHHHHHHHHHhhhc-ccCCceEEE
Q 007774 247 EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFD-TEVSQKLVV 324 (590)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~~l~~~~~-~~~~~k~iV 324 (590)
..... .......+.+.+...+. ..+...+...+...+. ...+.++||
T Consensus 245 ~~~~~-------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 293 (579)
T 3sqw_A 245 TVDKN-------------------------------EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 293 (579)
T ss_dssp SSCSS-------------------------------SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ecCcc-------------------------------ccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 32100 01223345555555554 2333334433333322 245679999
Q ss_pred EecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCC
Q 007774 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (590)
Q Consensus 325 F~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~ 404 (590)
||+|+..++.++..|..... .++.+..+||+|++.+|..++++|++|+..|||||+++++|||+|+
T Consensus 294 F~~t~~~~~~l~~~L~~~~~--------------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~ 359 (579)
T 3sqw_A 294 FAPTVKFTSFLCSILKNEFK--------------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPN 359 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHHT--------------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTT
T ss_pred ECCcHHHHHHHHHHHHHhhc--------------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCccc
Confidence 99999999999999987521 2678999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccchhhcccCCcCCCCccccccc
Q 007774 405 VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPLLKVLDSFPLYGQKPRVKKFL 483 (590)
Q Consensus 405 v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (590)
|++||+||+|.++..|+||+|||||.|+.|.+++|+.+.|..+++.+++. ++.+......+.
T Consensus 360 v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~----------------- 422 (579)
T 3sqw_A 360 VHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEP----------------- 422 (579)
T ss_dssp CCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEECC-----------------
T ss_pred CCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccCCCc-----------------
Confidence 99999999999999999999999999999999999999999999999876 555544322110
Q ss_pred cccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCC-hHHHHhhcCC
Q 007774 484 TTESHPWILSLQNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLH-LGHVAKSFAL 550 (590)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~-~~~~a~~f~l 550 (590)
.......+.+.+..+.+....+..++.+|.+.+.. .+.+...+ ++.+|.+||+
T Consensus 423 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 476 (579)
T 3sqw_A 423 -------SEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIK-------EYRFSERRILPEIASTYGV 476 (579)
T ss_dssp -------CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-------HHTCCHHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HhCCCcccHHHHHHHHHHH
Confidence 11355666777777777665555555555554432 23344454 4888988875
No 3
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-59 Score=513.46 Aligned_cols=463 Identities=27% Similarity=0.404 Sum_probs=354.2
Q ss_pred CccCCC----CCHHHHHHHHHhCCCCCCcHHHHHHHHHHh--cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCC
Q 007774 19 SFSSLG----LHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (590)
Q Consensus 19 ~f~~l~----l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il--~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~ 92 (590)
+|+++. |++.+++.| ..+||..|||+|.++|+.++ .++|+++.||||||||++|++|+++.+...... ...
T Consensus 69 ~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~ 145 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQY 145 (563)
T ss_dssp CHHHHHHTTSSCHHHHHHH-HTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STT
T ss_pred CHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccC
Confidence 455554 999999999 56899999999999999999 678999999999999999999999998764321 234
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhh---cCCcceEEEEcCCchHHHHHHh-cCCCcEEEECChHHHHHHhccCCCCCC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHR---FHWIVPGYVMGGENRSKEKARL-RKGISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
+.++|||+||++||.|+++.+..+... ........++||.........+ ..+++|+|+|||+|++++.......+.
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccc
Confidence 578999999999999999999998653 2335567788888877776665 447999999999999998765444567
Q ss_pred ceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCC
Q 007774 169 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~ 248 (590)
.+++||+||||++++++|...+..++..++.... ......|+++||||+++.+..++...+.+|..+.+...
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~--------~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~ 297 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNS--------KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTV 297 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS--------SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESS
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhccc--------cCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEecc
Confidence 8999999999999999999999999998875321 11126799999999999999999988888776655432
Q ss_pred CCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCC-ChHHHHHHHHHhhh-cccCCceEEEEe
Q 007774 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLF-DTEVSQKLVVFF 326 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~k~~~L~~~l~~~~-~~~~~~k~iVF~ 326 (590)
... .......+.+.+...+.. .+...+...+...+ ....+.++||||
T Consensus 298 ~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~ 346 (563)
T 3i5x_A 298 DKN-------------------------------EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA 346 (563)
T ss_dssp CSS-------------------------------SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCC-------------------------------CccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEc
Confidence 100 012234455555555432 33333444333322 224567999999
Q ss_pred cchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCc
Q 007774 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (590)
Q Consensus 327 ~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~ 406 (590)
+|+..++.++..|..... .++.+..+||+|++.+|..+++.|++|+..|||||+++++|||+|+|+
T Consensus 347 ~s~~~~~~l~~~L~~~~~--------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 412 (563)
T 3i5x_A 347 PTVKFTSFLCSILKNEFK--------------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVH 412 (563)
T ss_dssp SCHHHHHHHHHHHHHHHT--------------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCC
T ss_pred CcHHHHHHHHHHHHHhcc--------------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCC
Confidence 999999999999987521 167899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccchhhcccCCcCCCCccccccccc
Q 007774 407 CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPLLKVLDSFPLYGQKPRVKKFLTT 485 (590)
Q Consensus 407 ~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (590)
+||+||+|.++..|+||+|||||.|+.|.+++|+.+.|..+++.+++. ++.+.+......
T Consensus 413 ~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~------------------- 473 (563)
T 3i5x_A 413 EVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEP------------------- 473 (563)
T ss_dssp EEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEECC-------------------
T ss_pred EEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccccccCc-------------------
Confidence 999999999999999999999999999999999999999999999875 666554332110
Q ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCC-hHHHHhhcCCC-CCC----ccccc
Q 007774 486 ESHPWILSLQNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLH-LGHVAKSFALK-EQP----SLVGK 559 (590)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~-~~~~a~~f~l~-~~p----~~~~~ 559 (590)
.......+.+.+..+++....+..+|.+|.++|.. .|.+...+ +.++|++||+. .-| .+...
T Consensus 474 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 541 (563)
T 3i5x_A 474 -----SEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIK-------EYRFSERRILPEIASTYGVLLNDPQLKIPVSRR 541 (563)
T ss_dssp -----CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHTHH-------HHTCCHHHHHHHHHTHHHHHTTCTTCCEEECHH
T ss_pred -----cHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH-------HhCCChHHHHHHHHHHHHHHhCCCCCCCcccHH
Confidence 11345556667777888777677766666666543 23344443 66889988742 333 33334
Q ss_pred cchhhhHhh
Q 007774 560 SFQKQSKKR 568 (590)
Q Consensus 560 ~~~~~~~~~ 568 (590)
..++++.++
T Consensus 542 ~~~~~g~~~ 550 (563)
T 3i5x_A 542 FLDKLGLSR 550 (563)
T ss_dssp HHHHHTCTT
T ss_pred HHHHcCCCC
Confidence 444444433
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-58 Score=487.06 Aligned_cols=367 Identities=31% Similarity=0.504 Sum_probs=313.8
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCC----------
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR---------- 87 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~---------- 87 (590)
.+|++++|++.+.+.|. .+||..||++|.++||.++.|+|+++.||||||||++|++|+++.+......
T Consensus 15 ~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIE-LTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp SSGGGSCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 47999999999999995 5799999999999999999999999999999999999999999988653321
Q ss_pred --CCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCC
Q 007774 88 --IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF 165 (590)
Q Consensus 88 --~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~ 165 (590)
..+..+.++||++||++|+.|+++.+..+... ..+.+..++||.....+...+..+++|+|+||++|.+++.. ..+
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~ 171 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKI 171 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSB
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CCc
Confidence 01223478999999999999999999998763 34667888899888888888888899999999999999876 345
Q ss_pred CCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEec
Q 007774 166 LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (590)
Q Consensus 166 ~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 245 (590)
.+..+++||+||||++++++|...+..++...... .....|++++|||++..+..+....+.+|..+..
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP-----------PKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 240 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC-----------CBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEE
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC-----------CcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEe
Confidence 67899999999999999999999999988743211 0125899999999999999998888888877665
Q ss_pred CCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEE
Q 007774 246 DEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVF 325 (590)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF 325 (590)
.... ..+..+.+.+..++...+...+..++... ..+.++|||
T Consensus 241 ~~~~-----------------------------------~~~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~lVf 282 (417)
T 2i4i_A 241 GRVG-----------------------------------STSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLVF 282 (417)
T ss_dssp C---------------------------------------CCSSEEEEEEECCGGGHHHHHHHHHHTC---CTTCEEEEE
T ss_pred CCCC-----------------------------------CCccCceEEEEEeccHhHHHHHHHHHHhc---CCCCeEEEE
Confidence 4331 23455677777888888888888888764 346799999
Q ss_pred ecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCC
Q 007774 326 FSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV 405 (590)
Q Consensus 326 ~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v 405 (590)
|++.+.++.+++.|... ++.+..+||+|++.+|.+++++|++|+..|||||+++++|+|+|++
T Consensus 283 ~~~~~~~~~l~~~L~~~-----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v 345 (417)
T 2i4i_A 283 VETKKGADSLEDFLYHE-----------------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 345 (417)
T ss_dssp CSSHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCE
T ss_pred ECCHHHHHHHHHHHHHC-----------------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 99999999999999876 7789999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHH
Q 007774 406 KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (590)
Q Consensus 406 ~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~ 453 (590)
++||+||+|.++..|+||+||+||.|+.|.+++|+.+.|..++..+.+
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 346 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp EEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred CEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999777666654
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.6e-58 Score=487.09 Aligned_cols=368 Identities=29% Similarity=0.508 Sum_probs=321.1
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~ 95 (590)
...+|++++|++.+.+.|. .+||..|+++|+++++.++.|+|+++.+|||||||++|++|+++.+... ..+.+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~ 107 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIY-AYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQ 107 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT------SCSCC
T ss_pred CCCCHhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc------cCCce
Confidence 3468999999999999995 5799999999999999999999999999999999999999999876431 24678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
+||++||++|+.|+++.+..+.... .+.+..+.||.....+...+..+++|+|+|||+|.+++.. ..+.+..+++||+
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vVi 185 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVL 185 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEE
Confidence 9999999999999999999987643 4667788899888888778888899999999999999876 3566788999999
Q ss_pred echhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcc
Q 007774 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (590)
Q Consensus 176 DEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~ 255 (590)
||||++++++|...+..++..++. ..|++++|||++..+..+....+.+|..+......
T Consensus 186 DEah~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~------ 244 (410)
T 2j0s_A 186 DEADEMLNKGFKEQIYDVYRYLPP---------------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE------ 244 (410)
T ss_dssp ETHHHHTSTTTHHHHHHHHTTSCT---------------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG------
T ss_pred ccHHHHHhhhhHHHHHHHHHhCcc---------------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc------
Confidence 999999999999999999887764 68999999999998888877778788766543321
Q ss_pred cccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCC-hHHHHHHHHHhhhcccCCceEEEEecchhhHHH
Q 007774 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
..+..+.+.+..++... +...+..++... ...++||||++.+.++.
T Consensus 245 -----------------------------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~~ 291 (410)
T 2j0s_A 245 -----------------------------LTLEGIKQFFVAVEREEWKFDTLCDLYDTL----TITQAVIFCNTKRKVDW 291 (410)
T ss_dssp -----------------------------CSCTTEEEEEEEESSTTHHHHHHHHHHHHH----TSSEEEEECSSHHHHHH
T ss_pred -----------------------------ccCCCceEEEEEeCcHHhHHHHHHHHHHhc----CCCcEEEEEcCHHHHHH
Confidence 12345667777776555 888888877764 35799999999999999
Q ss_pred HHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC
Q 007774 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (590)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p 414 (590)
+++.|... ++.+..+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|
T Consensus 292 l~~~L~~~-----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p 354 (410)
T 2j0s_A 292 LTEKMREA-----------------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 354 (410)
T ss_dssp HHHHHHHT-----------------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred HHHHHHhC-----------------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCC
Confidence 99999876 7789999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 415 ~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
+++..|+||+||+||.|+.|.+++|+.+.|...++.+++. +..+.+++.
T Consensus 355 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 355 NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 9999999999999999999999999999999999999875 777776654
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.7e-56 Score=468.46 Aligned_cols=371 Identities=27% Similarity=0.462 Sum_probs=319.5
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~ 95 (590)
.+.+|++++|++.+.+.|. .+||..|+|+|.++++.++.|+++++.+|||+|||++|++|+++.+... ..+.+
T Consensus 6 ~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~ 78 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVS 78 (391)
T ss_dssp ---CGGGGCCCHHHHHHHH-HHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC------TTCCC
T ss_pred CCCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc------CCCee
Confidence 4568999999999999995 5799999999999999999999999999999999999999999887431 24568
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcC-CCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
+||++||++|+.|+++.+.++....+...+..+.||.........+.. .++|+|+||+++.+++.. ..+.+.++++||
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vV 157 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFI 157 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEE
Confidence 999999999999999999999876656778888998887776666654 489999999999998876 445678999999
Q ss_pred Eechhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCC
Q 007774 175 FDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (590)
Q Consensus 175 lDEah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~ 253 (590)
+||||++.+ .+|...+..++...+. ..|++++|||++..+..+....+.+|..+......
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---- 218 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET---- 218 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTSCS---------------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC----
T ss_pred EeCHHHHhhccchHHHHHHHHhhCCC---------------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc----
Confidence 999999988 4788888888877664 68999999999999999888888888777654331
Q ss_pred cccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
......+.+++..++...+...+..++... ...++||||++.+.++
T Consensus 219 ------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 219 ------------------------------KLTLHGLQQYYVKLKDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCI 264 (391)
T ss_dssp ------------------------------CCCCTTCEEEEEECCGGGHHHHHHHHHHHS----CCSEEEEECSCHHHHH
T ss_pred ------------------------------ccCcccceEEEEEcCchhHHHHHHHHHHhc----CCCcEEEEeCcHHHHH
Confidence 112345667777788888888888888763 4689999999999999
Q ss_pred HHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecC
Q 007774 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (590)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~ 413 (590)
.+++.|... ++.+..+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+
T Consensus 265 ~l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 265 ALAQLLVEQ-----------------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp HHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred HHHHHHHhC-----------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 999999876 778899999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhccccCCCCCccEEEEeCcc-chHHHHHHHHc-CCCCccccch
Q 007774 414 AGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDLEKH-GVSLTEYPLL 464 (590)
Q Consensus 414 p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~-e~~~~~~l~~~-~~~~~~~~~~ 464 (590)
|+++..|+||+||+||.|+.|.+++|+.+. +..+++.+++. ++++++++..
T Consensus 328 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 328 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999986 56778888775 7777777653
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.5e-56 Score=468.74 Aligned_cols=366 Identities=30% Similarity=0.478 Sum_probs=318.1
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|++++|++.+.+.|. .+||..|+++|.++++.++.|+++++.+|||||||++|++|++..+... ..+.++
T Consensus 20 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 92 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK------LNKIQA 92 (400)
T ss_dssp -CCGGGGCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSCCE
T ss_pred cCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc------cCCccE
Confidence 358999999999999995 5799999999999999999999999999999999999999999887531 245689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
||++||++|+.|+++.+..+.... ...+....|+.....+...+..+++|+|+||++|.+++.. ....+.++++||+|
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMD 170 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEe
Confidence 999999999999999999987643 3566778888887777777778899999999999998876 34567889999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||++.+.+|...+..++..++. ..|++++|||++..+.......+.+|..+.....
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-------- 227 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPP---------------THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-------- 227 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCS---------------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--------
T ss_pred CchHhhhhchHHHHHHHHHhCCc---------------CceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--------
Confidence 99999998888888888877754 6899999999999888888877777765543221
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
.....+.+++..++...+...+..++... ...++||||++.+.++.++
T Consensus 228 ----------------------------~~~~~~~~~~~~~~~~~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~ 275 (400)
T 1s2m_A 228 ----------------------------LTLKGITQYYAFVEERQKLHCLNTLFSKL----QINQAIIFCNSTNRVELLA 275 (400)
T ss_dssp ----------------------------CBCTTEEEEEEECCGGGHHHHHHHHHHHS----CCSEEEEECSSHHHHHHHH
T ss_pred ----------------------------cccCCceeEEEEechhhHHHHHHHHHhhc----CCCcEEEEEecHHHHHHHH
Confidence 12344667777777778888888877663 4679999999999999999
Q ss_pred HhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCC
Q 007774 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (590)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s 416 (590)
+.|... +..+..+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|.+
T Consensus 276 ~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s 338 (400)
T 1s2m_A 276 KKITDL-----------------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKT 338 (400)
T ss_dssp HHHHHH-----------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSS
T ss_pred HHHHhc-----------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCC
Confidence 999886 778999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
+..|+||+||+||.|+.|.+++|+.+.|...+..+++. +..+++++.
T Consensus 339 ~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 339 AETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp HHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred HHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 99999999999999999999999999999999999876 888877764
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.8e-56 Score=471.48 Aligned_cols=374 Identities=24% Similarity=0.431 Sum_probs=317.2
Q ss_pred cccccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCC
Q 007774 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSP 86 (590)
Q Consensus 9 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~ 86 (590)
....++++..+|++++|++.+++.|. .+||..|+++|.++++.++.+ +++++.||||||||++|++|+++.+...
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-- 92 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-- 92 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--
Confidence 34567788889999999999999995 589999999999999999987 9999999999999999999999987542
Q ss_pred CCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCC
Q 007774 87 RIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFL 166 (590)
Q Consensus 87 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~ 166 (590)
..+.++||++||++|+.|+++.+..+...+....++...|+...... ...+++|+|+||+++.+++.....+.
T Consensus 93 ----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~ 165 (412)
T 3fht_A 93 ----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFID 165 (412)
T ss_dssp ----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSC
T ss_pred ----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcC
Confidence 24568999999999999999999999876666777778777654332 13457999999999999997766777
Q ss_pred CCceeEEEEechhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEec
Q 007774 167 HTNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (590)
Q Consensus 167 ~~~l~~lVlDEah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 245 (590)
+.++++||+||||++++ .++...+..+...++. ..|++++|||++..+..+....+.+|..+..
T Consensus 166 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 230 (412)
T 3fht_A 166 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 230 (412)
T ss_dssp GGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCT---------------TCEEEEEESCCCHHHHHHHHHHSSSCEEECC
T ss_pred hhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC---------------CceEEEEEeecCHHHHHHHHHhcCCCeEEee
Confidence 78999999999999987 6888888888887764 6899999999999999999988888887765
Q ss_pred CCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecC-CChHHHHHHHHHhhhcccCCceEEE
Q 007774 246 DEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVV 324 (590)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~k~iV 324 (590)
.... ..+..+.+.+..+.. ..+...+..++... ...++||
T Consensus 231 ~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~lv 271 (412)
T 3fht_A 231 KREE-----------------------------------ETLDTIKQYYVLCSSRDEKFQALCNLYGAI----TIAQAMI 271 (412)
T ss_dssp CGGG-----------------------------------SSCTTEEEEEEECSSHHHHHHHHHHHHHHH----SSSEEEE
T ss_pred cccc-----------------------------------ccccCceEEEEEcCChHHHHHHHHHHHhhc----CCCCEEE
Confidence 4331 233455666666554 35666676666653 4679999
Q ss_pred EecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCC
Q 007774 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (590)
Q Consensus 325 F~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~ 404 (590)
||++++.++.++..|... +..+..+||+|++.+|..+++.|++|+..|||||+++++|+|+|+
T Consensus 272 f~~~~~~~~~l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 334 (412)
T 3fht_A 272 FCHTRKTASWLAAELSKE-----------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 334 (412)
T ss_dssp ECSSHHHHHHHHHHHHHT-----------------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTT
T ss_pred EeCCHHHHHHHHHHHHhC-----------------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccC
Confidence 999999999999999886 778899999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCC------ChhHHHhhhccccCCCCCccEEEEeCccc-hHHHHHHHHc-CCCCccccc
Q 007774 405 VKCIIQYDSAG------EATEYVHRVGRTARLGERGDSLLFLQPVE-MDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 405 v~~VI~~d~p~------s~~~yiqr~GRt~R~g~~g~~i~~l~~~e-~~~~~~l~~~-~~~~~~~~~ 463 (590)
+++||+||+|. +...|+||+||+||.|+.|.+++|+.+.+ ..+++.+++. +..+++++.
T Consensus 335 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 335 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp EEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999994 67899999999999999999999998764 8888888876 666666654
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-56 Score=471.69 Aligned_cols=366 Identities=30% Similarity=0.484 Sum_probs=303.6
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|+++++++.+.+.|. .+||..|+++|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++|
T Consensus 40 ~~f~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~~~l 112 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIY-AYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------LKATQAL 112 (414)
T ss_dssp CCGGGGCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT------SCSCCEE
T ss_pred cCHhhCCCCHHHHHHHH-HcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc------CCceeEE
Confidence 58999999999999995 5899999999999999999999999999999999999999999987542 2467799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhc-CCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
|++||++|+.|+++.+..+.... ...+...+||.........+. .+++|+|+||++|++++.. ..+.+..+++||+|
T Consensus 113 il~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViD 190 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLD 190 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEEC
T ss_pred EEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEE
Confidence 99999999999999999987743 456677788888777766666 6689999999999999876 45566789999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||++.+.+|...+..++..++. ..|++++|||++..+..+....+.+|..+......
T Consensus 191 Eah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~------- 248 (414)
T 3eiq_A 191 EADEMLSRGFKDQIYDIFQKLNS---------------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE------- 248 (414)
T ss_dssp SHHHHHHTTTHHHHHHHHTTSCT---------------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC-------
T ss_pred CHHHhhccCcHHHHHHHHHhCCC---------------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc-------
Confidence 99999999999999999888864 78999999999999999988888888777654432
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCC-ChHHHHHHHHHhhhcccCCceEEEEecchhhHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~ 335 (590)
..+..+.+.+..+... .+...+..++... ...++||||++++.++.+
T Consensus 249 ----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~lvf~~~~~~~~~l 296 (414)
T 3eiq_A 249 ----------------------------LTLEGIRQFYINVEREEWKLDTLCDLYETL----TITQAVIFINTRRKVDWL 296 (414)
T ss_dssp ----------------------------CCTTSCCEEEEECSSSTTHHHHHHHHHHSS----CCSSCEEECSCHHHHHHH
T ss_pred ----------------------------cCCCCceEEEEEeChHHhHHHHHHHHHHhC----CCCcEEEEeCCHHHHHHH
Confidence 1234455666666544 4777777777663 467999999999999999
Q ss_pred HHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCC
Q 007774 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (590)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~ 415 (590)
++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.
T Consensus 297 ~~~l~~~-----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~ 359 (414)
T 3eiq_A 297 TEKMHAR-----------------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 359 (414)
T ss_dssp HHHHHTT-----------------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCS
T ss_pred HHHHHhc-----------------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCC
Confidence 9999876 77899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 416 s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
++..|+||+||+||.|+.|.+++|+.+.+...++.+++. +..+.+++.
T Consensus 360 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (414)
T 3eiq_A 360 NRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPL 408 (414)
T ss_dssp STHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC
T ss_pred CHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccCh
Confidence 999999999999999999999999999999999999876 666666654
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.4e-58 Score=492.62 Aligned_cols=372 Identities=24% Similarity=0.431 Sum_probs=180.5
Q ss_pred cccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCC
Q 007774 11 VKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRI 88 (590)
Q Consensus 11 ~~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~ 88 (590)
..+.++..+|++++|++.+++.|. .+||..||++|.+++|.++.+ +++++.||||||||++|++|+++.+...
T Consensus 85 ~~~~~~~~~f~~~~l~~~l~~~l~-~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~---- 159 (479)
T 3fmp_B 85 NSPLYSVKSFEELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---- 159 (479)
T ss_dssp TSCCCCCCCSGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT----
T ss_pred CCCccCcCCHHHcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc----
Confidence 344556679999999999999995 589999999999999999987 8999999999999999999999877542
Q ss_pred CCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCC
Q 007774 89 DRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 89 ~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
..+.++|||+||++|+.|+++.+..+........+.+..++...... ...+++|+|+|||+|++++.+...+.+.
T Consensus 160 --~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 234 (479)
T 3fmp_B 160 --NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (479)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGG
T ss_pred --CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcc
Confidence 23558999999999999999999999886666777777777654322 1345789999999999999876777788
Q ss_pred ceeEEEEechhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCC
Q 007774 169 NLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (590)
Q Consensus 169 ~l~~lVlDEah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~ 247 (590)
++++||+||||++++ .+|...+..+...++. .+|++++|||++..+..++...+.+|..+.+..
T Consensus 235 ~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 299 (479)
T 3fmp_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (479)
T ss_dssp GCCEEEECCHHHHHTSTTHHHHHHHHHTTSCT---------------TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-
T ss_pred cCCEEEEECHHHHhhcCCcHHHHHHHHhhCCc---------------cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc
Confidence 999999999999997 6888888888877764 789999999999999999999998888877654
Q ss_pred CCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecC-CChHHHHHHHHHhhhcccCCceEEEEe
Q 007774 248 KKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFF 326 (590)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~k~iVF~ 326 (590)
.. ..+..+.+.+..++. ..+...|..++... ...++||||
T Consensus 300 ~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~lvF~ 340 (479)
T 3fmp_B 300 EE-----------------------------------ETLDTIKQYYVLCSSRDEKFQALCNLYGAI----TIAQAMIFC 340 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-----------------------------------cCcCCceEEEEEeCCHHHHHHHHHHHHhhc----cCCceEEEe
Confidence 42 123445555555554 45666666665542 357999999
Q ss_pred cchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCc
Q 007774 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (590)
Q Consensus 327 ~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~ 406 (590)
+++..++.++..|... +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 341 ~s~~~~~~l~~~L~~~-----------------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~ 403 (479)
T 3fmp_B 341 HTRKTASWLAAELSKE-----------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHhC-----------------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCC
Confidence 9999999999999876 67889999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC------ChhHHHhhhccccCCCCCccEEEEeCccc-hHHHHHHHHc-CCCCccccc
Q 007774 407 CIIQYDSAG------EATEYVHRVGRTARLGERGDSLLFLQPVE-MDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 407 ~VI~~d~p~------s~~~yiqr~GRt~R~g~~g~~i~~l~~~e-~~~~~~l~~~-~~~~~~~~~ 463 (590)
+||+||+|. +...|+||+||+||.|+.|.+++|+.+.+ ..+++.+++. +..+.+++.
T Consensus 404 ~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 404 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 999999995 66899999999999999999999998765 7788888765 555555544
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.5e-55 Score=451.64 Aligned_cols=361 Identities=30% Similarity=0.533 Sum_probs=312.2
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g-~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
...+|++++|++.+.+.|. .+||..|+++|.++++.++.+ +++++.+|||||||++|++|+++.+.. ..+.
T Consensus 4 ~~~~f~~~~l~~~~~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~ 75 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIR-NKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGI 75 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSC
T ss_pred ccCchhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCC
Confidence 3468999999999999995 579999999999999999988 699999999999999999999988643 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
++||++||++|+.|+++.+..+... ....+..+.||.........+. +++|+|+||+++.+++.. ..+.+.+++++|
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 152 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFI 152 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEE
Confidence 8999999999999999999998763 3456777888887766655554 689999999999998876 345578899999
Q ss_pred EechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCc
Q 007774 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (590)
Q Consensus 175 lDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~ 254 (590)
+||||++.+.+|...+..++..++. ..+++++|||++.....+....+.++..+....
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------- 210 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNACNK---------------DKRILLFSATMPREILNLAKKYMGDYSFIKAKI------- 210 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTSCS---------------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-------
T ss_pred EeCchHhhhhchHHHHHHHHHhCCC---------------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-------
Confidence 9999999999999999998887764 789999999999988888777777665544321
Q ss_pred ccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHH
Q 007774 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
...+.+.+..++...++..+..++.. .+.++||||++.+.++.
T Consensus 211 --------------------------------~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~lvf~~~~~~~~~ 253 (367)
T 1hv8_A 211 --------------------------------NANIEQSYVEVNENERFEALCRLLKN-----KEFYGLVFCKTKRDTKE 253 (367)
T ss_dssp --------------------------------SSSSEEEEEECCGGGHHHHHHHHHCS-----TTCCEEEECSSHHHHHH
T ss_pred --------------------------------CCCceEEEEEeChHHHHHHHHHHHhc-----CCCcEEEEECCHHHHHH
Confidence 12455667777777888888777753 46799999999999999
Q ss_pred HHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC
Q 007774 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (590)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p 414 (590)
+++.|... +..+..+||++++.+|..+++.|++|+..|||||+++++|+|+|++++||++++|
T Consensus 254 l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 254 LASMLRDI-----------------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp HHHHHHHT-----------------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred HHHHHHhc-----------------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 99999876 7789999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCccccc
Q 007774 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 415 ~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
.++.+|+||+||+||.|+.|.+++++.+.|...+..+++. +..++++++
T Consensus 317 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 317 QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp SCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred CCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceecc
Confidence 9999999999999999999999999999999999999876 777776653
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.6e-54 Score=451.11 Aligned_cols=362 Identities=25% Similarity=0.476 Sum_probs=299.8
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
..+|++++|++.+++.|. .+||..|+|+|.++++.++.+ +++++.||||||||++|++|+++.+... ..+.
T Consensus 4 ~~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~ 76 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIY-AMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE------DASP 76 (395)
T ss_dssp CCSSTTSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------CCSC
T ss_pred ccCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC------CCCc
Confidence 368999999999999995 579999999999999999998 9999999999999999999999987542 2467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
++||++||++|+.|+++.+..+.... ........++..... ...+++|+|+||+++.+++.. ..+.+.++++||
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 150 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFV 150 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHc-CCcccccCCEEE
Confidence 89999999999999999999987633 355555665543322 134689999999999998876 455678999999
Q ss_pred Eechhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCC
Q 007774 175 FDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (590)
Q Consensus 175 lDEah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~ 253 (590)
+||||++.+ .++...+..+...++. ..|++++|||+++.+..+....+.++..+......
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---- 211 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPK---------------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE---- 211 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCT---------------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG----
T ss_pred EEChhhhcCccccHHHHHHHHHhCCC---------------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc----
Confidence 999999998 7888888888887764 68999999999999999988888877766554331
Q ss_pred cccccccCccccchhhccCCCccccccccccCCcccceeEEEEecC-CChHHHHHHHHHhhhcccCCceEEEEecchhhH
Q 007774 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (590)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~ 332 (590)
..+..+.+.+..+.. ..+...+..++.. ....++||||++++.+
T Consensus 212 -------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lvf~~~~~~~ 256 (395)
T 3pey_A 212 -------------------------------VNVDAIKQLYMDCKNEADKFDVLTELYGL----MTIGSSIIFVATKKTA 256 (395)
T ss_dssp -------------------------------CSCTTEEEEEEECSSHHHHHHHHHHHHTT----TTSSEEEEECSCHHHH
T ss_pred -------------------------------cccccccEEEEEcCchHHHHHHHHHHHHh----ccCCCEEEEeCCHHHH
Confidence 122344555555533 3455555555443 3468999999999999
Q ss_pred HHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEec
Q 007774 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (590)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d 412 (590)
+.+++.|... +..+..+||+|++.+|.++++.|++|+..|||||+++++|+|+|++++||+||
T Consensus 257 ~~l~~~l~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 257 NVLYGKLKSE-----------------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp HHHHHHHHHT-----------------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred HHHHHHHHhc-----------------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcC
Confidence 9999999876 67899999999999999999999999999999999999999999999999999
Q ss_pred CCC------ChhHHHhhhccccCCCCCccEEEEeCc-cchHHHHHHHHc-C-CCCcccc
Q 007774 413 SAG------EATEYVHRVGRTARLGERGDSLLFLQP-VEMDYLQDLEKH-G-VSLTEYP 462 (590)
Q Consensus 413 ~p~------s~~~yiqr~GRt~R~g~~g~~i~~l~~-~e~~~~~~l~~~-~-~~~~~~~ 462 (590)
+|+ ++..|+||+||+||.|+.|.+++|+.+ .+..+++.+++. + +.+.+++
T Consensus 320 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 320 LPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp CCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred CCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 999 999999999999999999999999987 556778887765 3 4444444
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-55 Score=461.37 Aligned_cols=365 Identities=29% Similarity=0.484 Sum_probs=177.5
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|++++|++.+.+.|. .+||..|+++|+++++.++.|+++++.+|||||||++|++|+++.+... ..+.++
T Consensus 20 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~------~~~~~~ 92 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAPQA 92 (394)
T ss_dssp CCSSGGGCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT------CCSCCE
T ss_pred cCChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc------CCCCCE
Confidence 357999999999999995 5799999999999999999999999999999999999999999987542 246789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
||++||++|+.|+++.+..+.... ...+..+.||.........+. +++|+|+||+++.+.+.. ..+.+.+++++|+|
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILD 169 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEE
Confidence 999999999999999999987643 356777888877665555444 689999999999998876 34566789999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||++.+.+|...+..++..++. ..|++++|||+++.+..+....+.+|..+.......
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~------ 228 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPP---------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL------ 228 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCC---------------CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc------
Confidence 99999999999999999998875 689999999999988888888888887776544321
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCC-ChHHHHHHHHHhhhcccCCceEEEEecchhhHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~ 335 (590)
.+..+.+.+..++.. .+...+..++.. ....++||||++.+.++.+
T Consensus 229 -----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 229 -----------------------------TLEGIKQFYVNVEEEEYKYECLTDLYDS----ISVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------cCCCceEEEEEcCchhhHHHHHHHHHhc----CCCCcEEEEECCHHHHHHH
Confidence 122233333333332 255555555544 2457999999999999999
Q ss_pred HHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCC
Q 007774 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (590)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~ 415 (590)
++.|... +..+..+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|.
T Consensus 276 ~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~ 338 (394)
T 1fuu_A 276 TTKLRND-----------------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHc-----------------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC
Confidence 9999875 67788999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc-CCCCcccc
Q 007774 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462 (590)
Q Consensus 416 s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~-~~~~~~~~ 462 (590)
++..|+||+||+||.|+.|.+++|+.+.|..+++.+++. +.++.+++
T Consensus 339 s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (394)
T 1fuu_A 339 NKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 386 (394)
T ss_dssp ------------------------------------------------
T ss_pred CHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccC
Confidence 999999999999999999999999999999988888775 56655554
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-51 Score=419.57 Aligned_cols=333 Identities=32% Similarity=0.498 Sum_probs=278.6
Q ss_pred CCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 25 l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
|++.+.+.| +.+||..|+|+|+++++.+++++++++.+|||||||++|++|+++. +.++||++||++
T Consensus 1 l~~~i~~~l-~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAI-REMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHH
T ss_pred CCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHH
Confidence 578999999 4689999999999999999999999999999999999999999874 456999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhc
Q 007774 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (590)
Q Consensus 105 La~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~ 184 (590)
|+.|+++.+.++.... ...+..+.||.........+. +++|+|+||++|.+++.. ..+.+.+++++|+||||++.++
T Consensus 68 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhcc
Confidence 9999999999987643 356677888887766666554 489999999999998876 4455678999999999999999
Q ss_pred CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccc
Q 007774 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLES 264 (590)
Q Consensus 185 gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 264 (590)
+|...+..++..++. ..+++++|||++..+.......+.++..+....
T Consensus 145 ~~~~~~~~~~~~~~~---------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~----------------- 192 (337)
T 2z0m_A 145 GFIDDIKIILAQTSN---------------RKITGLFSATIPEEIRKVVKDFITNYEEIEACI----------------- 192 (337)
T ss_dssp TCHHHHHHHHHHCTT---------------CSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG-----------------
T ss_pred ccHHHHHHHHhhCCc---------------ccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc-----------------
Confidence 999999999988875 688999999999988888777777665543211
Q ss_pred cchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccC
Q 007774 265 DVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQW 344 (590)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~ 344 (590)
....+.+.+..++...+. ....+.. ..+.++||||++.+.++.+++.|..
T Consensus 193 ---------------------~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~lvf~~~~~~~~~l~~~l~~--- 242 (337)
T 2z0m_A 193 ---------------------GLANVEHKFVHVKDDWRS--KVQALRE----NKDKGVIVFVRTRNRVAKLVRLFDN--- 242 (337)
T ss_dssp ---------------------GGGGEEEEEEECSSSSHH--HHHHHHT----CCCSSEEEECSCHHHHHHHHTTCTT---
T ss_pred ---------------------ccCCceEEEEEeChHHHH--HHHHHHh----CCCCcEEEEEcCHHHHHHHHHHhhh---
Confidence 122344445544444332 2233333 4568999999999999998887753
Q ss_pred CCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhh
Q 007774 345 SPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRV 424 (590)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~ 424 (590)
+..+||+|+..+|.+++++|++|+..|||||+++++|+|+|++++||+||+|.++..|+||+
T Consensus 243 ------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~ 304 (337)
T 2z0m_A 243 ------------------AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRI 304 (337)
T ss_dssp ------------------EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHH
T ss_pred ------------------hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhc
Confidence 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 425 GRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 425 GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
||+||.|+.|.+++|+. .|..+++.+++.
T Consensus 305 GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~ 333 (337)
T 2z0m_A 305 GRTGRMGRKGEAITFIL-NEYWLEKEVKKV 333 (337)
T ss_dssp TTBCGGGCCEEEEEEES-SCHHHHHHHC--
T ss_pred CccccCCCCceEEEEEe-CcHHHHHHHHHH
Confidence 99999999999999999 888888877653
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=9.8e-51 Score=442.08 Aligned_cols=342 Identities=17% Similarity=0.246 Sum_probs=270.4
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~ 95 (590)
....++++++++.+...|.+.|||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +..
T Consensus 19 ~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~ 86 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGF 86 (591)
T ss_dssp GGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSE
T ss_pred hccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCc
Confidence 33455678999999999987799999999999999999999999999999999999999999752 347
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHH---Hh---cCCCcEEEECChHHH------HHHhccC
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA---RL---RKGISILVATPGRLL------DHLKHTS 163 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l---~~~~~IlV~Tp~rl~------~~l~~~~ 163 (590)
+|||+|+++|+.|+.+.+..+ .+.+..+.|+........ .+ ..+++|+|+||++|. +.+..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-- 159 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-- 159 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--
T ss_pred EEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--
Confidence 999999999999999999886 345667777766544332 22 356899999999874 33332
Q ss_pred CCCCCceeEEEEechhhhhhcC--chHHHHH---HHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcC
Q 007774 164 SFLHTNLRWIIFDEADRILELG--FGKEIEE---ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE 238 (590)
Q Consensus 164 ~~~~~~l~~lVlDEah~ll~~g--f~~~l~~---il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~ 238 (590)
...+..+++|||||||++.++| |...+.. +...++ ..+++++|||++..+.......+.
T Consensus 160 ~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~----------------~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 160 AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP----------------NASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT----------------TSEEEEEESSCCHHHHHHHHHHTT
T ss_pred hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCC----------------CCcEEEEecCCCHHHHHHHHHHhC
Confidence 2345689999999999999988 7666554 233333 689999999999887766555444
Q ss_pred C--CEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCC----ChHHHHHHHHHh
Q 007774 239 T--PVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG----SRLAVLLSILKH 312 (590)
Q Consensus 239 ~--p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~k~~~L~~~l~~ 312 (590)
. +..+..... ..++ .|...... .++..|..++..
T Consensus 224 ~~~~~~~~~~~~--------------------------------------r~nl--~~~v~~~~~~~~~~~~~l~~~l~~ 263 (591)
T 2v1x_A 224 IEKCFTFTASFN--------------------------------------RPNL--YYEVRQKPSNTEDFIEDIVKLING 263 (591)
T ss_dssp CCSCEEEECCCC--------------------------------------CTTE--EEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCcEEEecCCC--------------------------------------Cccc--EEEEEeCCCcHHHHHHHHHHHHHH
Confidence 3 332221110 0111 12222222 233444444443
Q ss_pred hhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEe
Q 007774 313 LFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392 (590)
Q Consensus 313 ~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLia 392 (590)
. ..+.++||||+|++.++.+++.|... ++.+..+||+|++.+|..+++.|++|+..||||
T Consensus 264 ~---~~~~~~IVf~~sr~~~e~la~~L~~~-----------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVA 323 (591)
T 2v1x_A 264 R---YKGQSGIIYCFSQKDSEQVTVSLQNL-----------------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVA 323 (591)
T ss_dssp T---TTTCEEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEE
T ss_pred h---ccCCCeEEEeCcHHHHHHHHHHHHHC-----------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 2 24689999999999999999999876 788999999999999999999999999999999
Q ss_pred ccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHH
Q 007774 393 TDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 393 Tdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~ 452 (590)
|+++++|||+|+|++||+||+|.+++.|+||+||+||.|..|.|++|+.+.|...+..+.
T Consensus 324 T~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 324 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp CTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred echhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877776654
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.6e-50 Score=434.47 Aligned_cols=342 Identities=20% Similarity=0.300 Sum_probs=275.9
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|++++|++.+.+.|.+.|||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. +..+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~l 69 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTV 69 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEE
Confidence 379999999999999977799999999999999999999999999999999999999999842 24689
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHh-cCCCcEEEECChHHHHHHhccCCCCCCceeEE
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-RKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l-~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~l 173 (590)
||+|+++|+.|+.+.+..+ .+....+.++....... ..+ ...++|+|+||++|...... ..+...++++|
T Consensus 70 vi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~v 143 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLL 143 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEE
T ss_pred EECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEE
Confidence 9999999999999998874 34556666665544332 222 34589999999999532111 11233689999
Q ss_pred EEechhhhhhcC--chHHHHHH---HHHhccCCCCCCCCCCCccccCceEEEEeecccchHHH-HHH-hhcCCCEEEecC
Q 007774 174 IFDEADRILELG--FGKEIEEI---LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH-LAK-ISLETPVLIGLD 246 (590)
Q Consensus 174 VlDEah~ll~~g--f~~~l~~i---l~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~-l~~-~~l~~p~~i~~~ 246 (590)
|+||||++.++| |...+..+ ...++ ..+++++|||++..+.. +.. +.+.+|..+...
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~----------------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 207 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFP----------------TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS 207 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCT----------------TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCC----------------CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC
Confidence 999999999987 65555544 34443 58899999999987654 333 345555544321
Q ss_pred CCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEe
Q 007774 247 EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFF 326 (590)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~ 326 (590)
.. .. ...+...+...+...+..++... .+.++||||
T Consensus 208 ~~--------------------------------------r~--~l~~~v~~~~~~~~~l~~~l~~~----~~~~~IVf~ 243 (523)
T 1oyw_A 208 FD--------------------------------------RP--NIRYMLMEKFKPLDQLMRYVQEQ----RGKSGIIYC 243 (523)
T ss_dssp CC--------------------------------------CT--TEEEEEEECSSHHHHHHHHHHHT----TTCCEEEEC
T ss_pred CC--------------------------------------CC--ceEEEEEeCCCHHHHHHHHHHhc----CCCcEEEEe
Confidence 11 01 12344455667788888888763 467999999
Q ss_pred cchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCc
Q 007774 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (590)
Q Consensus 327 ~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~ 406 (590)
+|++.++.+++.|... ++.+..+||+|++.+|..+++.|++|+..|||||+++++|||+|+|+
T Consensus 244 ~sr~~~e~l~~~L~~~-----------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~ 306 (523)
T 1oyw_A 244 NSRAKVEDTAARLQSK-----------------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVR 306 (523)
T ss_dssp SSHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCC
T ss_pred CCHHHHHHHHHHHHHC-----------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCcc
Confidence 9999999999999876 77899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHHHc
Q 007774 407 CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 407 ~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
+||+||+|.+++.|+||+||+||.|..|.+++|+.+.|...++.+...
T Consensus 307 ~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998887776654
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.3e-50 Score=421.91 Aligned_cols=337 Identities=18% Similarity=0.266 Sum_probs=261.7
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 27 ~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
+.+.+.+.+.+||. |||+|.++++.++.|+|+++.||||||||++|++|++..+ ..+.++|||+||++|+
T Consensus 8 ~~~~~~l~~~~~~~-~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---------~~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 8 EDFRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHHSSC-CCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---------TTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---------cCCCEEEEEECCHHHH
Confidence 45667776667885 9999999999999999999999999999999999988876 2467899999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCch---HHHHHHhcCC-CcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhh
Q 007774 107 LQVYEILHKLLHRFHWIVPGYVMGGENR---SKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (590)
Q Consensus 107 ~Q~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll 182 (590)
.|+++.+..+.. ..+.+..++||... ......+..+ ++|+|+|||+|.+++.. +.+.++++||+||||++.
T Consensus 78 ~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 78 KQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhh
Confidence 999999999765 45678888888877 4455666666 99999999999988864 455689999999997654
Q ss_pred ----------h-cCchHH-HHHHHHHhccCCCCCCCCCCCccccCceEEEEeec-ccchHH-HHHHhhcCCCEEEecCCC
Q 007774 183 ----------E-LGFGKE-IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSAT-LNEKVN-HLAKISLETPVLIGLDEK 248 (590)
Q Consensus 183 ----------~-~gf~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT-~~~~~~-~l~~~~l~~p~~i~~~~~ 248 (590)
+ +||... +..++..++..... .........|++++||| .+..+. .+....+. +....
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~- 223 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIY----ERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR- 223 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCC----CCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC-
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhh----hhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc-
Confidence 4 888888 89999988611000 00000127899999999 555443 22222211 00000
Q ss_pred CCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecc
Q 007774 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t 328 (590)
....+..+.+.+..+ .+...|..++... +.++||||++
T Consensus 224 ----------------------------------~~~~~~~i~~~~~~~---~~~~~l~~~l~~~-----~~~~lVF~~~ 261 (414)
T 3oiy_A 224 ----------------------------------LVSVARNITHVRISS---RSKEKLVELLEIF-----RDGILIFAQT 261 (414)
T ss_dssp ----------------------------------CCCCCCSEEEEEESS---CCHHHHHHHHHHH-----CSSEEEEESS
T ss_pred ----------------------------------cccccccchheeecc---CHHHHHHHHHHHc-----CCCEEEEECC
Confidence 112334455555443 5667777777762 4799999999
Q ss_pred hhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceE-eccCCCChHHHHHHHHHhhccCccEEEe----ccccccCCCCC
Q 007774 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF-RLHGNMKQEDRRTTFGAFKTEKKALLLS----TDVAARGLDFP 403 (590)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~-~lhg~~~~~~R~~~~~~F~~~~~~vLia----Tdv~~rGlDip 403 (590)
++.++.++..|... ++.+. .+||+ +|. ++.|++|+.+|||| |+++++|+|+|
T Consensus 262 ~~~~~~l~~~L~~~-----------------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip 318 (414)
T 3oiy_A 262 EEEGKELYEYLKRF-----------------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLP 318 (414)
T ss_dssp HHHHHHHHHHHHHT-----------------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCT
T ss_pred HHHHHHHHHHHHHc-----------------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccc
Confidence 99999999999886 67787 89995 444 99999999999999 99999999999
Q ss_pred C-CcEEEEecCC--CChhHHHhhhccccCCC----CCccEEEEeCccchHHHHHHHHc
Q 007774 404 K-VKCIIQYDSA--GEATEYVHRVGRTARLG----ERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 404 ~-v~~VI~~d~p--~s~~~yiqr~GRt~R~g----~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
+ |++||+||+| .++..|+||+||+||.| +.|.+++|+ .|..++..+++.
T Consensus 319 ~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~ 374 (414)
T 3oiy_A 319 ERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTR 374 (414)
T ss_dssp TTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHH
T ss_pred cccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHH
Confidence 9 9999999999 99999999999999998 579999988 566666666543
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-50 Score=436.73 Aligned_cols=361 Identities=22% Similarity=0.379 Sum_probs=251.7
Q ss_pred CccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 19 ~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
.|...++++.+.+.+. ..||..|+++|.++++.++.+ +++++.+|||||||++|++|+++.+... ..+.++
T Consensus 120 ~~~~~~l~~~~~~~l~-~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~------~~~~~v 192 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXX-XXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS------VPKPQA 192 (508)
T ss_dssp --------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT------CCSCCE
T ss_pred cccccccccccccccc-cccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC------CCCceE
Confidence 3556678889999995 569999999999999999998 9999999999999999999999987542 235689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
||++||++|+.|+++.+..+..... .......++... .....+++|+|+||+++.+.+.. ..+.+.++++||+|
T Consensus 193 Lvl~P~~~L~~Q~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiD 266 (508)
T 3fho_A 193 ICLAPSRELARQIMDVVTEMGKYTE-VKTAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLD 266 (508)
T ss_dssp EEECSCHHHHHHHHHHHHHHSTTSS-CCEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEC
T ss_pred EEEECcHHHHHHHHHHHHHhCCccC-eeEEEEeCCccc----ccccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEe
Confidence 9999999999999999999865332 222333333221 12234689999999999998876 44567899999999
Q ss_pred chhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcc
Q 007774 177 EADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (590)
Q Consensus 177 Eah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~ 255 (590)
|||++.+ .++...+..++..++. ..|++++|||+++.+..+....+.++..+......
T Consensus 267 EaH~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~------ 325 (508)
T 3fho_A 267 EADNMLDQQGLGDQSMRIKHLLPR---------------NTQIVLFSATFSERVEKYAERFAPNANEIRLKTEE------ 325 (508)
T ss_dssp CHHHHTTC--CHHHHHHHHHHSCT---------------TCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC------
T ss_pred chhhhcccCCcHHHHHHHHHhCCc---------------CCeEEEEeCCCCHHHHHHHHHhcCCCeEEEecccc------
Confidence 9999988 6899999999998875 68999999999999999998888888776554332
Q ss_pred cccccCccccchhhccCCCccccccccccCCcccceeEEEEec-CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHH
Q 007774 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (590)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~ 334 (590)
..+..+.+.+..+. ...+...+..++.. ....++||||++++.++.
T Consensus 326 -----------------------------~~~~~~~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~LVF~~s~~~a~~ 372 (508)
T 3fho_A 326 -----------------------------LSVEGIKQLYMDCQSEEHKYNVLVELYGL----LTIGQSIIFCKKKDTAEE 372 (508)
T ss_dssp ---------------------------------CCCCEEEEC--CHHHHHHHHHHHC-------CCCEEEBCSSTTTTTH
T ss_pred -----------------------------CCcccceEEEEECCchHHHHHHHHHHHHh----cCCCcEEEEECCHHHHHH
Confidence 11233444555543 33455556655544 346899999999999999
Q ss_pred HHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC
Q 007774 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (590)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p 414 (590)
++..|... +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|
T Consensus 373 l~~~L~~~-----------------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 373 IARRMTAD-----------------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp HHHHHTTT-----------------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----
T ss_pred HHHHHHhC-----------------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 99999876 6788999999999999999999999999999999999999999999999999999
Q ss_pred ------CChhHHHhhhccccCCCCCccEEEEeCc-cchHHHHHHHHc-CCCCccccc
Q 007774 415 ------GEATEYVHRVGRTARLGERGDSLLFLQP-VEMDYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 415 ------~s~~~yiqr~GRt~R~g~~g~~i~~l~~-~e~~~~~~l~~~-~~~~~~~~~ 463 (590)
.++..|+||+||+||.|+.|.+++|+.+ .+..++..+++. +..+.+++.
T Consensus 436 ~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 436 LDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 8999999999999999999999999985 566777777765 666666554
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1e-47 Score=418.01 Aligned_cols=366 Identities=17% Similarity=0.216 Sum_probs=259.2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|| +||++|..++|.++.|+ +++++||+|||++|++|++.... .|..++||+|||+||.|+++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---------~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 4799 89999999999999998 99999999999999999985432 256799999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhcc-----CCCCCCceeEEEEechhhhh-hcC---
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL-ELG--- 185 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~ll-~~g--- 185 (590)
+...+ .+.+++++||.+... +....+++|+|||||+| +++|... ..+.+..+.++|+||||+|+ |++
T Consensus 147 l~~~l-gl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 147 IFEFL-GLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp HHHHT-TCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred HHhhc-CCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 98855 578889999986543 33345799999999999 6666543 23567899999999999998 775
Q ss_pred ------------chHHHHHHHHHhccCCCCCCCCCCCccccCceEE-----------------EEeecccchHHHH----
Q 007774 186 ------------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNL-----------------LLSATLNEKVNHL---- 232 (590)
Q Consensus 186 ------------f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~i-----------------l~SAT~~~~~~~l---- 232 (590)
|...+..|+..++... .-......+|++ ++|||.+..+..+
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~~------~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al 297 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAEK------DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQAL 297 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSSS------SBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHH
T ss_pred hhhcCCcccchhHHHHHHHHHHhCcccc------cceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHH
Confidence 6688888888886310 001112367777 8999987533333
Q ss_pred -HHhhc-CCCEEEe-------cCCCCCCCCcccccccC-ccccc--hhhcc--CCCc------------------ccccc
Q 007774 233 -AKISL-ETPVLIG-------LDEKKLPEDKSHVRFGS-LESDV--KEEVE--HPST------------------TMRST 280 (590)
Q Consensus 233 -~~~~l-~~p~~i~-------~~~~~~~~~~~~~~~~~-~~~~~--~~~~~--~~~~------------------~~~~~ 280 (590)
+...+ .++.++. ++... ........+.. ..... +.... .... ..+..
T Consensus 298 ~A~~l~~~d~dYiv~dg~v~ivDe~t-gr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGT 376 (844)
T 1tf5_A 298 KAHVAMQKDVDYVVEDGQVVIVDSFT-GRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGT 376 (844)
T ss_dssp HHHHTCCBTTTEEEETTEEEEBCTTT-CCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESC
T ss_pred HHHHHhhcCCceEEecCeeEEeeccc-ccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcc
Confidence 22222 2332221 11100 00000000000 00000 00000 0000 00000
Q ss_pred c-------------cccCCcccc------eeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhh
Q 007774 281 T-------------EDFKLPAQL------VQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341 (590)
Q Consensus 281 ~-------------~~~~~~~~l------~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~ 341 (590)
. ....+|.+. .+.++.++...|...+...+.... ..+.++||||+|++.++.++..|..
T Consensus 377 a~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~ 454 (844)
T 1tf5_A 377 AKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKN 454 (844)
T ss_dssp CGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHH
Confidence 0 000112111 122455666788888888876542 2357899999999999999999988
Q ss_pred ccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCC--------CCcEEEEecC
Q 007774 342 FQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP--------KVKCIIQYDS 413 (590)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip--------~v~~VI~~d~ 413 (590)
. |+++..|||++.+.+|..+.+.|+.| .|+||||+|+||+||+ ++.+||+|+.
T Consensus 455 ~-----------------gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~ 515 (844)
T 1tf5_A 455 K-----------------GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER 515 (844)
T ss_dssp T-----------------TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC
T ss_pred C-----------------CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC
Confidence 7 78889999999888887777777655 7999999999999999 7889999999
Q ss_pred CCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 414 p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
|.|...|+||+|||||+|.+|.+++|+++.|
T Consensus 516 p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 516 HESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 9999999999999999999999999998876
No 20
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.8e-47 Score=437.20 Aligned_cols=337 Identities=18% Similarity=0.247 Sum_probs=261.4
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHH
Q 007774 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (590)
Q Consensus 29 l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 108 (590)
+.+.+...+||. ||++|.++||.++.|+|++++||||||||++|++|++..+. .+.++|||+|||+||.|
T Consensus 67 ~~~~~~~~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~Q 136 (1104)
T 4ddu_A 67 FRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQ 136 (1104)
T ss_dssp HHHHHHHHSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHHH
Confidence 444555568995 99999999999999999999999999999999998888762 46789999999999999
Q ss_pred HHHHHHHHHhhcCCcceEEEEcCCch---HHHHHHhcCC-CcEEEECChHHHHHHhccCCCCCCceeEEEEechh-----
Q 007774 109 VYEILHKLLHRFHWIVPGYVMGGENR---SKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD----- 179 (590)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah----- 179 (590)
+++.+..+. ...+.++.++||.+. ..+...+..+ ++|+|+|||+|.+++.. +.+.++++||+||||
T Consensus 137 ~~~~l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~ 211 (1104)
T 4ddu_A 137 TLERLQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKA 211 (1104)
T ss_dssp HHHHHHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTS
T ss_pred HHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccc
Confidence 999999965 345678889999887 5566777776 99999999999988864 556789999999995
Q ss_pred -----hhhh-cCchHH-HHHHHHHhccCCCCCCCCCCCccccCceEEEEeec-ccchHHH-HHHhhcCCCEEEecCCCCC
Q 007774 180 -----RILE-LGFGKE-IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSAT-LNEKVNH-LAKISLETPVLIGLDEKKL 250 (590)
Q Consensus 180 -----~ll~-~gf~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT-~~~~~~~-l~~~~l~~p~~i~~~~~~~ 250 (590)
++++ +||... +..++..++.... ..........|+++|||| .+..+.. +....+. +.+..
T Consensus 212 ~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~----~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~--- 280 (1104)
T 4ddu_A 212 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKI----YERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR--- 280 (1104)
T ss_dssp SHHHHHHHHTSSCCHHHHHHHHHHHHHTSC----CCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB---
T ss_pred cccchhhhHhcCCCHHHHHHHHHhcccchh----hhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc---
Confidence 5666 899998 8999999871100 000001137899999999 5554442 2222111 11110
Q ss_pred CCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchh
Q 007774 251 PEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (590)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~ 330 (590)
....+.++.+.+..+ .+...|..++... +.++||||++++
T Consensus 281 --------------------------------~~~~~~~i~~~~~~~---~k~~~L~~ll~~~-----~~~~LVF~~s~~ 320 (1104)
T 4ddu_A 281 --------------------------------LVSVARNITHVRISS---RSKEKLVELLEIF-----RDGILIFAQTEE 320 (1104)
T ss_dssp --------------------------------CCCCCCCEEEEEESC---CCHHHHHHHHHHH-----CSSEEEEESSSH
T ss_pred --------------------------------CCCCcCCceeEEEec---CHHHHHHHHHHhc-----CCCEEEEECcHH
Confidence 112345566666554 5677777777763 489999999999
Q ss_pred hHHHHHHhhhhccCCCCCCChhHHHhhhcCcceE-eccCCCChHHHHHHHHHhhccCccEEEe----ccccccCCCCCC-
Q 007774 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF-RLHGNMKQEDRRTTFGAFKTEKKALLLS----TDVAARGLDFPK- 404 (590)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~-~lhg~~~~~~R~~~~~~F~~~~~~vLia----Tdv~~rGlDip~- 404 (590)
.++.++..|... ++.+. .+||+ |.+ +++|++|+.+|||| ||+++||||+|+
T Consensus 321 ~a~~l~~~L~~~-----------------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~ 377 (1104)
T 4ddu_A 321 EGKELYEYLKRF-----------------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPER 377 (1104)
T ss_dssp HHHHHHHHHHHT-----------------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTT
T ss_pred HHHHHHHHHHhC-----------------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCC
Confidence 999999999886 77887 89992 555 99999999999999 999999999999
Q ss_pred CcEEEEecCCC---------------------------------------------------------------------
Q 007774 405 VKCIIQYDSAG--------------------------------------------------------------------- 415 (590)
Q Consensus 405 v~~VI~~d~p~--------------------------------------------------------------------- 415 (590)
|++|||||+|.
T Consensus 378 V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~ 457 (1104)
T 4ddu_A 378 IKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLEL 457 (1104)
T ss_dssp CCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEE
T ss_pred CCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEE
Confidence 99999999998
Q ss_pred ---ChhHHHhhhccccCCCCCc--cEEEEeCccchHHHHHHHHc
Q 007774 416 ---EATEYVHRVGRTARLGERG--DSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 416 ---s~~~yiqr~GRt~R~g~~g--~~i~~l~~~e~~~~~~l~~~ 454 (590)
++.+|+||+|||||.|..| .++.++...|...++.|++.
T Consensus 458 ~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~ 501 (1104)
T 4ddu_A 458 IIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTR 501 (1104)
T ss_dssp EEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHH
T ss_pred EecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHH
Confidence 8889999999999976543 34444444777777666653
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.9e-46 Score=406.77 Aligned_cols=385 Identities=17% Similarity=0.210 Sum_probs=208.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
+.-+|||+|.++++.++.|+|+++.+|||||||++|++|+++.+..... ..+.++|||+||++|+.|+++.+..++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4446999999999999999999999999999999999999998875321 236789999999999999999999998
Q ss_pred hhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHH-HHHHHH
Q 007774 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI-EEILDI 196 (590)
Q Consensus 118 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l-~~il~~ 196 (590)
... .+.+..++||.........+..+++|+|+||++|.+++.......+..+++||+||||++.+.++...+ ..++..
T Consensus 80 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 80 ERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGG-TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred ccc-CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 744 466777888876666566666679999999999999998754436789999999999999987753333 222222
Q ss_pred hccCCCCCCCCCCCccccCceEEEEeecccch--------HHHHHHh--hcCCCEEEecCCCC--C----CCCc-ccccc
Q 007774 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAKI--SLETPVLIGLDEKK--L----PEDK-SHVRF 259 (590)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~--------~~~l~~~--~l~~p~~i~~~~~~--~----~~~~-~~~~~ 259 (590)
.... .....|++++|||++.. .+.+..+ .+............ + .... ....+
T Consensus 159 ~~~~-----------~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (556)
T 4a2p_A 159 KFNS-----------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLV 227 (556)
T ss_dssp HHCC--------------CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEEC
T ss_pred hhcc-----------cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEc
Confidence 1110 01258999999999531 1111111 11111111111000 0 0000 00000
Q ss_pred cC-ccc-----------cchhhccCCC---ccccccccccC-------------------Ccc-----------------
Q 007774 260 GS-LES-----------DVKEEVEHPS---TTMRSTTEDFK-------------------LPA----------------- 288 (590)
Q Consensus 260 ~~-~~~-----------~~~~~~~~~~---~~~~~~~~~~~-------------------~~~----------------- 288 (590)
.. ... .......... .........+. .+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 228 KRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 307 (556)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 00 000 0000000000 00000000000 000
Q ss_pred ---------------------cceeE-------------------------------EEEecCCChHHHHHHHHHhhhcc
Q 007774 289 ---------------------QLVQR-------------------------------YVKVPCGSRLAVLLSILKHLFDT 316 (590)
Q Consensus 289 ---------------------~l~~~-------------------------------~~~~~~~~k~~~L~~~l~~~~~~ 316 (590)
.+..+ ........|+..|..+|...+..
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~ 387 (556)
T 4a2p_A 308 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 387 (556)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC
Confidence 00000 00001356888888888776544
Q ss_pred cCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhc-cCccEEEeccc
Q 007774 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLSTDV 395 (590)
Q Consensus 317 ~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~-~~~~vLiaTdv 395 (590)
..+.++||||++++.++.++..|........ .....+.|.....+||+|++.+|.+++++|++ |+.+|||||++
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~ 462 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNY-----IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 462 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGS-----CCEEC------------------------------CCEEEEEC-
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcce-----eeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCc
Confidence 5678999999999999999999976410000 00001224556667899999999999999999 99999999999
Q ss_pred cccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 396 AARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 396 ~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
+++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|+.+.+.
T Consensus 463 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp ----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999999999999999999999 999 88999999988654
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-46 Score=433.50 Aligned_cols=398 Identities=19% Similarity=0.198 Sum_probs=267.5
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
..|+.+++++.+...+...++|. ||++|.++|+.++.|++++++||||||||++|.+|+++.+.. +.++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~-ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvl 231 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVI 231 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSC-CCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEE
Confidence 36777888888777775555555 999999999999999999999999999999999999998743 67899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
|++||++|+.|+++.+..++. .+++++|+... ..+++|+|+|||+|.+++... ...+.++++|||||
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDE 298 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEET
T ss_pred EEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhh
Confidence 999999999999999998743 46778887653 356899999999999998774 34467899999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHH--HHHHhhcCCCEEEecCCCCCCCCcc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVN--HLAKISLETPVLIGLDEKKLPEDKS 255 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~--~l~~~~l~~p~~i~~~~~~~~~~~~ 255 (590)
||++.+++|+..+..++..++. ..|+++||||+++..+ .+.......|..+......-.+...
T Consensus 299 aH~l~d~~rg~~~e~ii~~l~~---------------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~ 363 (1108)
T 3l9o_A 299 VHYMRDKERGVVWEETIILLPD---------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQH 363 (1108)
T ss_dssp GGGTTSHHHHHHHHHHHHHSCT---------------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEE
T ss_pred hhhccccchHHHHHHHHHhcCC---------------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceE
Confidence 9999999999999999999975 7999999999987543 3334444555544433221111000
Q ss_pred cccc-c--Cccccchh-----------hccCCCccccccccccCCcccceeEEEEe-cCCChHHHHHHHHHhhhcccCCc
Q 007774 256 HVRF-G--SLESDVKE-----------EVEHPSTTMRSTTEDFKLPAQLVQRYVKV-PCGSRLAVLLSILKHLFDTEVSQ 320 (590)
Q Consensus 256 ~~~~-~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~k~~~L~~~l~~~~~~~~~~ 320 (590)
.... . ........ .........................+... ........+..++..+.. ....
T Consensus 364 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~ 442 (1108)
T 3l9o_A 364 YLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYN 442 (1108)
T ss_dssp EEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCC
T ss_pred EEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCC
Confidence 0000 0 00000000 00000000000000000000000000000 000002333333333222 3467
Q ss_pred eEEEEecchhhHHHHHHhhhhccCCCCCCChh--------------------HHHh--hhcCcceEeccCCCChHHHHHH
Q 007774 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDM--------------------ELKQ--LFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 321 k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~--------------------~~~~--~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
++||||+++..|+.++..|............. .... ......+..+||+|++.+|..+
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 99999999999999999997654332111000 0000 1112348899999999999999
Q ss_pred HHHhhccCccEEEeccccccCCCCCCCcEEEEecCC--------CChhHHHhhhccccCCC--CCccEEEEeCcc-chHH
Q 007774 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA--------GEATEYVHRVGRTARLG--ERGDSLLFLQPV-EMDY 447 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p--------~s~~~yiqr~GRt~R~g--~~g~~i~~l~~~-e~~~ 447 (590)
++.|++|..+|||||+++++|||+|++++||+++.| .++.+|+||+|||||.| ..|.+++++.+. +...
T Consensus 523 ~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~ 602 (1108)
T 3l9o_A 523 EILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQV 602 (1108)
T ss_dssp HHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHH
T ss_pred HHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHH
Confidence 999999999999999999999999999999977654 36778999999999999 678888888764 4555
Q ss_pred HHHHHHc
Q 007774 448 LQDLEKH 454 (590)
Q Consensus 448 ~~~l~~~ 454 (590)
+..+...
T Consensus 603 ~~~l~~~ 609 (1108)
T 3l9o_A 603 AKGMVKG 609 (1108)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 6555543
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.7e-45 Score=402.85 Aligned_cols=389 Identities=16% Similarity=0.206 Sum_probs=240.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.||++|.++++.++.|+|+++.+|||||||++|++|+++.+..... ..+.++|||+||++|+.|+++.+..++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4999999999999999999999999999999999999998876321 236789999999999999999999998744
Q ss_pred CCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCc-hHHHHHHHHHhcc
Q 007774 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF-GKEIEEILDILGS 199 (590)
Q Consensus 121 ~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf-~~~l~~il~~l~~ 199 (590)
.+.+..++|+.........+..+++|+|+||++|.+++.......+.++++||+||||++.+.+. ...+..++.....
T Consensus 80 -~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 -GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp -TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred -CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 46678888888766666666667999999999999999875443678899999999999988753 3333333333211
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccch--------HHHHHHh--hcCCCEEEecCCCC------CCCCc-ccccccC-
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAKI--SLETPVLIGLDEKK------LPEDK-SHVRFGS- 261 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~~--------~~~l~~~--~l~~p~~i~~~~~~------~~~~~-~~~~~~~- 261 (590)
. ......|++++|||++.. ...+..+ .+..+......... ..... .......
T Consensus 159 ~----------~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (555)
T 3tbk_A 159 E----------SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR 228 (555)
T ss_dssp S----------CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC
T ss_pred c----------ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc
Confidence 1 011268999999999542 1222211 12212222111100 00000 0000000
Q ss_pred ccccc-----------hhhccCCC-------ccccccccc----------------cC----------------------
Q 007774 262 LESDV-----------KEEVEHPS-------TTMRSTTED----------------FK---------------------- 285 (590)
Q Consensus 262 ~~~~~-----------~~~~~~~~-------~~~~~~~~~----------------~~---------------------- 285 (590)
..... ........ ......... ..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 00000 00000000 000000000 00
Q ss_pred ----------------------------------------------CcccceeEEE-EecCCChHHHHHHHHHhhhcccC
Q 007774 286 ----------------------------------------------LPAQLVQRYV-KVPCGSRLAVLLSILKHLFDTEV 318 (590)
Q Consensus 286 ----------------------------------------------~~~~l~~~~~-~~~~~~k~~~L~~~l~~~~~~~~ 318 (590)
.+..+..... ......|+..|..+|...+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 0000000000 00135688888888887765556
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhc-cCccEEEeccccc
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLSTDVAA 397 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~-~~~~vLiaTdv~~ 397 (590)
+.++||||++++.++.++..|...+..... ....+.|.....+||+|++.+|.+++++|++ |+.+|||||++++
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~ 463 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFL-----KPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVAD 463 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTC-----CEEECCC--------------------------CCSEEEECCCTT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCce-----eeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhh
Confidence 789999999999999999999875311000 0001224455567889999999999999999 9999999999999
Q ss_pred cCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHH
Q 007774 398 RGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDL 451 (590)
Q Consensus 398 rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l 451 (590)
+|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|+.+.+......+
T Consensus 464 ~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 464 EGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred cCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999999999999999999 999 89999999999776554444
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.9e-45 Score=409.10 Aligned_cols=369 Identities=20% Similarity=0.260 Sum_probs=263.7
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
...+|++++|++.+.+.+. .+||..|+++|.++++. +..+++++++||||||||++|.+|+++.+.. .+.
T Consensus 6 ~~~~~~~l~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~ 76 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIK-KRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGG 76 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHH-TTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCS
T ss_pred ccCcHHHcCCCHHHHHHHH-hCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCC
Confidence 3468999999999999994 58999999999999999 7889999999999999999999999988764 256
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
++++++|+|+||.|+++.++.+.. . ...++..+|+...... .+ .+++|+|+|||++..++... ...+.++++||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vI 150 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHR-PEWLNEVNYFV 150 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHC-CGGGGGEEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCC-hhHhhccCEEE
Confidence 899999999999999999964433 3 3567777777654332 12 36899999999999988773 33468999999
Q ss_pred EechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCc
Q 007774 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (590)
Q Consensus 175 lDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~ 254 (590)
+||||++.+.++...++.++..++ ..|++++|||+++ .+.++.+.. .+. +.......+-..
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~----------------~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~ 211 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK----------------RRNLLALSATISN-YKQIAKWLG-AEP-VATNWRPVPLIE 211 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH----------------TSEEEEEESCCTT-HHHHHHHHT-CEE-EECCCCSSCEEE
T ss_pred EechhhcCCcccchHHHHHHHhcc----------------cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCCCCCCCCceE
Confidence 999999998889999999999887 5899999999976 355555432 221 211111100000
Q ss_pred ccccccCccccchhhccCCCccccccccccCCcccceeEEEEec-CCChHHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
. ....... . ..-....+..... .+. .......+...+ ..++++||||++++.++
T Consensus 212 ~-~~~~~~~-~--------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~LVF~~s~~~~~ 266 (715)
T 2va8_A 212 G-VIYPERK-K--------------KEYNVIFKDNTTK---KVHGDDAIIAYTLDSL------SKNGQVLVFRNSRKMAE 266 (715)
T ss_dssp E-EEEECSS-T--------------TEEEEEETTSCEE---EEESSSHHHHHHHHHH------TTTCCEEEECSSHHHHH
T ss_pred E-EEecCCc-c--------------cceeeecCcchhh---hcccchHHHHHHHHHH------hcCCCEEEEECCHHHHH
Confidence 0 0000000 0 0000000000000 011 122233333322 24689999999999999
Q ss_pred HHHHhhhhccCCCCCCC--------------------hhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEec
Q 007774 334 FHYSLLSEFQWSPHSQP--------------------DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST 393 (590)
Q Consensus 334 ~~~~~l~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaT 393 (590)
.++..|........... +..... .....+..+||+|++.+|..+++.|++|..+|||||
T Consensus 267 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~-~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT 345 (715)
T 2va8_A 267 STALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS-LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVAT 345 (715)
T ss_dssp HHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH-HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH-HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 99999876421100000 000111 123468899999999999999999999999999999
Q ss_pred cccccCCCCCCCcEEEE----ec-------CCCChhHHHhhhccccCCC--CCccEEEEeCccc
Q 007774 394 DVAARGLDFPKVKCIIQ----YD-------SAGEATEYVHRVGRTARLG--ERGDSLLFLQPVE 444 (590)
Q Consensus 394 dv~~rGlDip~v~~VI~----~d-------~p~s~~~yiqr~GRt~R~g--~~g~~i~~l~~~e 444 (590)
+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.|++++.+.+
T Consensus 346 ~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 346 PTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp GGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred hHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999999999 99 8999999999999999998 4789999987765
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.9e-46 Score=419.01 Aligned_cols=389 Identities=18% Similarity=0.213 Sum_probs=227.2
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHH
Q 007774 30 CDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (590)
Q Consensus 30 ~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 109 (590)
..++ +.+||..|+++|.++++.++.|+|+++.+|||||||++|++|+++.+..... ..+.++|||+||++|+.|+
T Consensus 3 ~~~l-~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 3 VSDT-NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp -----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHH
T ss_pred CCcc-cccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHH
Confidence 3455 5689999999999999999999999999999999999999999998865321 2346799999999999999
Q ss_pred HHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcC-chH
Q 007774 110 YEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG-FGK 188 (590)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g-f~~ 188 (590)
.+++.+++.. ..+.++.++||.........+..+++|+|+|||+|.+++.......+.++++|||||||++.+.. +..
T Consensus 78 ~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~ 156 (696)
T 2ykg_A 78 KSVFSKYFER-HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNM 156 (696)
T ss_dssp HHHHHHHTTT-TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred HHHHHHHhcc-CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHH
Confidence 9999998753 24667788888766555555666799999999999999987443367889999999999988653 222
Q ss_pred HHHHHHHH-hccCCCCCCCCCCCccccCceEEEEeeccc--------chHHHHHHhh--cCC------------------
Q 007774 189 EIEEILDI-LGSRNIGSIGEGNEVSNVKRQNLLLSATLN--------EKVNHLAKIS--LET------------------ 239 (590)
Q Consensus 189 ~l~~il~~-l~~~~~~~~~~~~~~~~~~~q~il~SAT~~--------~~~~~l~~~~--l~~------------------ 239 (590)
.+...+.. +.. ......+++++|||+. +....+.... +..
T Consensus 157 i~~~~l~~~~~~-----------~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~ 225 (696)
T 2ykg_A 157 IMFNYLDQKLGG-----------SSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVY 225 (696)
T ss_dssp HHHHHHHHHHTT-----------CCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSC
T ss_pred HHHHHHHHhhcc-----------cCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcC
Confidence 22223322 111 0112689999999986 2223332221 111
Q ss_pred -CEEEecCCCCCCCCcccccccCccccchh----hccCCCccc---ccc-------------------------------
Q 007774 240 -PVLIGLDEKKLPEDKSHVRFGSLESDVKE----EVEHPSTTM---RST------------------------------- 280 (590)
Q Consensus 240 -p~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~------------------------------- 280 (590)
|..................+......... ......... ...
T Consensus 226 ~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (696)
T 2ykg_A 226 KPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 305 (696)
T ss_dssp CCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHH
T ss_pred CCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHH
Confidence 21111000000000000000000000000 000000000 000
Q ss_pred -----------------------cc---------------ccCCcccceeEEEEe----------------cCCChHHHH
Q 007774 281 -----------------------TE---------------DFKLPAQLVQRYVKV----------------PCGSRLAVL 306 (590)
Q Consensus 281 -----------------------~~---------------~~~~~~~l~~~~~~~----------------~~~~k~~~L 306 (590)
.. .......+.+.+... ....|+..|
T Consensus 306 ~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L 385 (696)
T 2ykg_A 306 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDL 385 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 00 000001111111100 245688888
Q ss_pred HHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEec--------cCCCChHHHHHH
Q 007774 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL--------HGNMKQEDRRTT 378 (590)
Q Consensus 307 ~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l--------hg~~~~~~R~~~ 378 (590)
..++...+....+.++||||++++.++.+++.|...+. +.++.+..+ ||+|++.+|.++
T Consensus 386 ~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~l~G~~~~~~h~~~~~~eR~~v 452 (696)
T 2ykg_A 386 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK-------------LSFLKPGILTGRGKTNQNTGMTLPAQKCI 452 (696)
T ss_dssp HHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTT-------------CCSCCEEC---------------------
T ss_pred HHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCC-------------ccccceeEEEccCCCccccCCCHHHHHHH
Confidence 88888765444568999999999999999999987631 112556666 669999999999
Q ss_pred HHHhhc-cCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHHH
Q 007774 379 FGAFKT-EKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQD 450 (590)
Q Consensus 379 ~~~F~~-~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~ 450 (590)
+++|++ |+..|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++++.+.+......
T Consensus 453 ~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~ 523 (696)
T 2ykg_A 453 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQ 523 (696)
T ss_dssp --------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHH
T ss_pred HHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHH
Confidence 999998 999999999999999999999999999999999999999999 998 7899999988876544333
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.9e-45 Score=412.94 Aligned_cols=387 Identities=17% Similarity=0.200 Sum_probs=217.2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|+..||++|.++|+.++.|+|+++.+|||||||++|++|+++.+..... ..+.++|||+||++|+.|+++.++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999876321 2367899999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHH-HHHHH
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE-IEEIL 194 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~-l~~il 194 (590)
++... .+.++.++||.........+..+++|+|+||++|.+++.......+.++++||+||||++.+.+.... +..++
T Consensus 319 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 319 HFERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHGGG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred hcccC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 98744 46778888888766666667778999999999999999864443678999999999999987653222 22222
Q ss_pred HHhccCCCCCCCCCCCccccCceEEEEeecccch--------HHHHHHh--hcCCCEEEecCCC--CC----CCCc-ccc
Q 007774 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAKI--SLETPVLIGLDEK--KL----PEDK-SHV 257 (590)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~--------~~~l~~~--~l~~p~~i~~~~~--~~----~~~~-~~~ 257 (590)
...... ....+|++++|||+... ...+..+ .+........... .+ .... ...
T Consensus 398 ~~~~~~-----------~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~ 466 (797)
T 4a2q_A 398 EQKFNS-----------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (797)
T ss_dssp HHHHTT-----------CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEE
T ss_pred HHhhcc-----------CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEE
Confidence 221110 11258999999999521 1222221 1221111111110 00 0000 000
Q ss_pred cccC-cccc-------c----hhhccC---------CCccccccc-------------cccCCccc--------------
Q 007774 258 RFGS-LESD-------V----KEEVEH---------PSTTMRSTT-------------EDFKLPAQ-------------- 289 (590)
Q Consensus 258 ~~~~-~~~~-------~----~~~~~~---------~~~~~~~~~-------------~~~~~~~~-------------- 289 (590)
.... .... . ...... ......... .....+..
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 0000 0 000000 000000000 00000000
Q ss_pred ------------------------ceeE-------------------------------EEEecCCChHHHHHHHHHhhh
Q 007774 290 ------------------------LVQR-------------------------------YVKVPCGSRLAVLLSILKHLF 314 (590)
Q Consensus 290 ------------------------l~~~-------------------------------~~~~~~~~k~~~L~~~l~~~~ 314 (590)
+..+ ........|+..|..+|...+
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 0000 000013568888888888765
Q ss_pred cccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhc-cCccEEEec
Q 007774 315 DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLST 393 (590)
Q Consensus 315 ~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~-~~~~vLiaT 393 (590)
....+.++||||++++.++.++..|........ .....+.|.....+||+|++.+|..++++|++ |+.+|||||
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~-----~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT 701 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNY-----IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT 701 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCS-----CCCEEC----------------------------CCSEEEEE
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCccccc-----ccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEc
Confidence 445678999999999999999999976310000 00001235566778999999999999999999 999999999
Q ss_pred cccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 394 DVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 394 dv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|+.+.+.
T Consensus 702 ~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999999999999999999999 999 88999999988654
No 27
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=6.9e-46 Score=428.68 Aligned_cols=346 Identities=20% Similarity=0.248 Sum_probs=262.0
Q ss_pred CccCCCCCHH-----HHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007774 19 SFSSLGLHST-----LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (590)
Q Consensus 19 ~f~~l~l~~~-----l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~ 93 (590)
.+...++.+. +.+.+.+.+||. | ++|.++||.++.|+|+++.||||||||+ |.+|++..+.. .+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~ 99 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KG 99 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TS
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cC
Confidence 3444444443 346676679999 9 9999999999999999999999999998 99999887754 35
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhcCC---cceEEEEcCCchHHH---HHHhcCCCcEEEECChHHHHHHhccCCCCC
Q 007774 94 TFALVLVPTRELCLQVYEILHKLLHRFHW---IVPGYVMGGENRSKE---KARLRKGISILVATPGRLLDHLKHTSSFLH 167 (590)
Q Consensus 94 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~---~~~~~~~gg~~~~~~---~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~ 167 (590)
.++|||+||++||.|+++.++.++..... ..++.++||...... ...+.. ++|+|+|||+|++++.. +
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L 173 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----L 173 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----S
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----h
Confidence 78999999999999999999999875432 167888888877653 344555 99999999999998865 4
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCC
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~ 247 (590)
.++++||+||||++++ |...+..++..+.-.... ........+|++++|||++.. ..+....+.++..+.+..
T Consensus 174 ~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~----~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~ 246 (1054)
T 1gku_B 174 GHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDL----KTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGS 246 (1054)
T ss_dssp CCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEET----TTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSC
T ss_pred ccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhh----hhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccC
Confidence 6899999999999999 678888888887421000 001112368899999999876 433333333332222111
Q ss_pred CCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEec
Q 007774 248 KKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFS 327 (590)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~ 327 (590)
. ......+.+.+. ...+...|..++... +.++||||+
T Consensus 247 ~-----------------------------------~~~~~~i~~~~~---~~~k~~~L~~ll~~~-----~~~~LVF~~ 283 (1054)
T 1gku_B 247 S-----------------------------------RITVRNVEDVAV---NDESISTLSSILEKL-----GTGGIIYAR 283 (1054)
T ss_dssp C-----------------------------------EECCCCEEEEEE---SCCCTTTTHHHHTTS-----CSCEEEEES
T ss_pred c-----------------------------------ccCcCCceEEEe---chhHHHHHHHHHhhc-----CCCEEEEEc
Confidence 1 112234445444 355666677766653 578999999
Q ss_pred chhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEe----ccccccCCCCC
Q 007774 328 TCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS----TDVAARGLDFP 403 (590)
Q Consensus 328 t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLia----Tdv~~rGlDip 403 (590)
|++.++.+++.|... +.+..+||+|. .+++.|++|+.+|||| ||+++||||+|
T Consensus 284 t~~~a~~l~~~L~~~------------------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip 340 (1054)
T 1gku_B 284 TGEEAEEIYESLKNK------------------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLP 340 (1054)
T ss_dssp SHHHHHHHHHTTTTS------------------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCT
T ss_pred CHHHHHHHHHHHhhc------------------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccC
Confidence 999999999998753 46888999983 7889999999999999 99999999999
Q ss_pred CC-cEEEEecCC--------------------------------------------------------------------
Q 007774 404 KV-KCIIQYDSA-------------------------------------------------------------------- 414 (590)
Q Consensus 404 ~v-~~VI~~d~p-------------------------------------------------------------------- 414 (590)
+| ++||+||+|
T Consensus 341 ~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 420 (1054)
T 1gku_B 341 ERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGE 420 (1054)
T ss_dssp TTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTE
T ss_pred CcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecc
Confidence 96 999999999
Q ss_pred ---CChhHHHhhhccccCCCCCc--cEEEEeCccchHHHHHHHHc
Q 007774 415 ---GEATEYVHRVGRTARLGERG--DSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 415 ---~s~~~yiqr~GRt~R~g~~g--~~i~~l~~~e~~~~~~l~~~ 454 (590)
.|..+|+||+|||||.|..| .+++|+.+.|..++..+++.
T Consensus 421 ~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~ 465 (1054)
T 1gku_B 421 VIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIER 465 (1054)
T ss_dssp EEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHH
T ss_pred eecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHH
Confidence 79999999999999988876 58888888888888777664
No 28
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-45 Score=400.83 Aligned_cols=373 Identities=18% Similarity=0.183 Sum_probs=232.7
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|. +||++|..++|.++.|+ ++.++||||||++|++|++.... .|..++||+|||+||.|+++++..
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---------~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------TSSCCEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHH
Confidence 3676 59999999999999998 99999999999999999986543 256799999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccC-----CCCCCceeEEEEechhhhh-hcC---
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL-ELG--- 185 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~ll-~~g--- 185 (590)
+...+ .+.+++++||.+.. .+.+..+++|+|||||+| +++|.... .+.+..++++|+||||+|+ |++
T Consensus 138 l~~~l-gl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tp 214 (853)
T 2fsf_A 138 LFEFL-GLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTP 214 (853)
T ss_dssp HHHHT-TCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCE
T ss_pred HHHhc-CCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccc
Confidence 99855 57888999998754 334445799999999999 78887643 2456899999999999999 654
Q ss_pred ------------chHHHHHHHHHhccCCCCCCC-----CCCCccccCceEE------------------------EEeec
Q 007774 186 ------------FGKEIEEILDILGSRNIGSIG-----EGNEVSNVKRQNL------------------------LLSAT 224 (590)
Q Consensus 186 ------------f~~~l~~il~~l~~~~~~~~~-----~~~~~~~~~~q~i------------------------l~SAT 224 (590)
|...+..|+..++.......+ ..-....+.+|++ ++|||
T Consensus 215 LIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat 294 (853)
T 2fsf_A 215 LIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPA 294 (853)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcc
Confidence 678888999888741000000 0000001133432 89999
Q ss_pred ccchHHHHH-----HhhcC--------CCEEEecCCCCCCCCcccccc-----cCccccchhhccCCCccc---------
Q 007774 225 LNEKVNHLA-----KISLE--------TPVLIGLDEKKLPEDKSHVRF-----GSLESDVKEEVEHPSTTM--------- 277 (590)
Q Consensus 225 ~~~~~~~l~-----~~~l~--------~p~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--------- 277 (590)
.+..+..+. ...+. ++.++.++... ........+ ..++..+.-.........
T Consensus 295 ~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~t-gR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyf 373 (853)
T 2fsf_A 295 NIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHT-GRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYF 373 (853)
T ss_dssp ---------------------------------------------------------------CCCCCEEEEEEEHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCccceeecCcEEEEeccc-CcccCCCccchhhhHHHHhcccceecccccccceeehHHHH
Confidence 764322221 11111 11111111100 000000000 000000000000000000
Q ss_pred ---------ccc-------------ccccCCccc------ceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecch
Q 007774 278 ---------RST-------------TEDFKLPAQ------LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTC 329 (590)
Q Consensus 278 ---------~~~-------------~~~~~~~~~------l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~ 329 (590)
+.. ..-..+|.+ -.+.++.++...|...+...+.... ..+.++||||+|+
T Consensus 374 r~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~si 451 (853)
T 2fsf_A 374 RLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTISI 451 (853)
T ss_dssp TTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESSH
T ss_pred hhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECcH
Confidence 000 000111111 1123455667789989888886543 2467999999999
Q ss_pred hhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCC----
Q 007774 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV---- 405 (590)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v---- 405 (590)
+.++.++..|... ++++..|||++.+.+|..+.+.|+.| .|+||||+|+||+||+..
T Consensus 452 e~se~Ls~~L~~~-----------------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~ 512 (853)
T 2fsf_A 452 EKSELVSNELTKA-----------------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQ 512 (853)
T ss_dssp HHHHHHHHHHHHT-----------------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHH
T ss_pred HHHHHHHHHHHHC-----------------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchH
Confidence 9999999999987 78889999999988888888999988 799999999999999873
Q ss_pred ---------------------------------cEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 406 ---------------------------------KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 406 ---------------------------------~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
.+||+|+.|.|...|+||+|||||.|.+|.+++|+++.|.
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 513 AEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999988763
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.1e-45 Score=409.41 Aligned_cols=360 Identities=19% Similarity=0.237 Sum_probs=267.8
Q ss_pred CccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 19 ~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
+|++++|++.+.+.+. .+||..|+++|.++++. ++.+++++++||||||||++|.+|+++.+.. .+.+++
T Consensus 2 ~f~~l~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~l 72 (720)
T 2zj8_A 2 RVDELRVDERIKSTLK-ERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKAV 72 (720)
T ss_dssp BGGGCCSCHHHHHHHH-HTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEEE
T ss_pred cHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEEE
Confidence 6999999999999995 57999999999999998 8899999999999999999999999988764 256899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
|++|+++||.|+++.++.+.. + ...++.++|+...... ...+++|+|+||+++..++... ...+.++++||+||
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE 146 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEK-I-GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKILVADE 146 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGG-G-TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT-CTTGGGEEEEEEET
T ss_pred EEcCcHHHHHHHHHHHHHHHh-c-CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC-hhhhhcCCEEEEEC
Confidence 999999999999999975543 3 4567778886554332 2246899999999999888763 34467999999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||++.+.++...+..++..++. ..|++++|||+++ ...++.+... + .+.......+-... .
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~---------------~~~ii~lSATl~n-~~~~~~~l~~-~-~~~~~~rp~~l~~~-~ 207 (720)
T 2zj8_A 147 IHLIGSRDRGATLEVILAHMLG---------------KAQIIGLSATIGN-PEELAEWLNA-E-LIVSDWRPVKLRRG-V 207 (720)
T ss_dssp GGGGGCTTTHHHHHHHHHHHBT---------------TBEEEEEECCCSC-HHHHHHHTTE-E-EEECCCCSSEEEEE-E
T ss_pred CcccCCCcccHHHHHHHHHhhc---------------CCeEEEEcCCcCC-HHHHHHHhCC-c-ccCCCCCCCcceEE-E
Confidence 9999998999999999999973 6899999999986 4555554321 1 11111110000000 0
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
.+ . . ....+.... .........+...+. .++++||||++++.++.++.
T Consensus 208 ~~---~----~--------------~~~~~~~~~-----~~~~~~~~~~~~~~~------~~~~~LVF~~sr~~~~~~a~ 255 (720)
T 2zj8_A 208 FY---Q----G--------------FVTWEDGSI-----DRFSSWEELVYDAIR------KKKGALIFVNMRRKAERVAL 255 (720)
T ss_dssp EE---T----T--------------EEEETTSCE-----EECSSTTHHHHHHHH------TTCCEEEECSCHHHHHHHHH
T ss_pred Ee---C----C--------------eeeccccch-----hhhhHHHHHHHHHHh------CCCCEEEEecCHHHHHHHHH
Confidence 00 0 0 000000000 002333444444433 35899999999999999999
Q ss_pred hhhhccCC--CC---------------CCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCC
Q 007774 338 LLSEFQWS--PH---------------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400 (590)
Q Consensus 338 ~l~~~~~~--~~---------------~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGl 400 (590)
.|...... .+ ...+..+.. .....+..+||+|++.+|..+++.|++|..+|||||+++++|+
T Consensus 256 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~-~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gv 334 (720)
T 2zj8_A 256 ELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAK-AIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGI 334 (720)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHH-HHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGC
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHH-HHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccC
Confidence 88753111 00 000000111 1234688999999999999999999999999999999999999
Q ss_pred CCCCCcEEEE----ec----CCCChhHHHhhhccccCCC--CCccEEEEeCccch
Q 007774 401 DFPKVKCIIQ----YD----SAGEATEYVHRVGRTARLG--ERGDSLLFLQPVEM 445 (590)
Q Consensus 401 Dip~v~~VI~----~d----~p~s~~~yiqr~GRt~R~g--~~g~~i~~l~~~e~ 445 (590)
|+|++++||+ || .|.+..+|+||+||+||.| ..|.|++++.+.+.
T Consensus 335 dip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 335 NTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp CCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCH
T ss_pred CCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccH
Confidence 9999999998 77 6899999999999999998 57899999888763
No 30
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=9e-45 Score=406.90 Aligned_cols=364 Identities=20% Similarity=0.234 Sum_probs=263.5
Q ss_pred CccCCC--CCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 19 SFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 19 ~f~~l~--l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
+|++|+ |++.+.+.+. .+||..|+++|.++++.++.+++++++||||||||++|.+|+++.+.. +.++
T Consensus 2 ~f~~l~~~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~ 71 (702)
T 2p6r_A 2 KVEELAESISSYAVGILK-EEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKS 71 (702)
T ss_dssp CSHHHHHHHHHHHHHHHH-CC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCE
T ss_pred chhhhhhccCHHHHHHHH-hCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcE
Confidence 688998 9999999994 689999999999999999999999999999999999999999988753 4679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
++++|+|+||.|+++.++.+.. . ...++.++|+...... ...+++|+|+|||++..++... ...+.++++||+|
T Consensus 72 l~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIiD 145 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVD 145 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEET
T ss_pred EEEeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEEe
Confidence 9999999999999999964433 2 3567777777654332 1246899999999999988773 3346799999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCccc
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~ 256 (590)
|||++.+.++...++.++..+... ....|++++|||+++ ...++.+.. .+. +.......+-....
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~~------------~~~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~~~ 210 (702)
T 2p6r_A 146 EIHLLDSEKRGATLEILVTKMRRM------------NKALRVIGLSATAPN-VTEIAEWLD-ADY-YVSDWRPVPLVEGV 210 (702)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHHHH------------CTTCEEEEEECCCTT-HHHHHHHTT-CEE-EECCCCSSCEEEEE
T ss_pred eeeecCCCCcccHHHHHHHHHHhc------------CcCceEEEECCCcCC-HHHHHHHhC-CCc-ccCCCCCccceEEE
Confidence 999999999999999998887531 126899999999986 566665432 222 22211110000000
Q ss_pred ccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHH
Q 007774 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (590)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~ 336 (590)
.+. .....+......... -.....+...+. .++++||||++++.++.++
T Consensus 211 -~~~---------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~------~~~~~LVF~~s~~~~~~~a 259 (702)
T 2p6r_A 211 -LCE---------------------GTLELFDGAFSTSRR---VKFEELVEECVA------ENGGVLVFESTRRGAEKTA 259 (702)
T ss_dssp -ECS---------------------SEEEEEETTEEEEEE---CCHHHHHHHHHH------TTCCEEEECSSHHHHHHHH
T ss_pred -eeC---------------------CeeeccCcchhhhhh---hhHHHHHHHHHh------cCCCEEEEcCCHHHHHHHH
Confidence 000 000000000000000 013333333332 3689999999999999999
Q ss_pred HhhhhccCC---CCC-----------CChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCC
Q 007774 337 SLLSEFQWS---PHS-----------QPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDF 402 (590)
Q Consensus 337 ~~l~~~~~~---~~~-----------~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDi 402 (590)
..|...... ... ..+..... ..+..+..+||+|++.+|..+++.|++|..+|||||+++++|+|+
T Consensus 260 ~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi 338 (702)
T 2p6r_A 260 VKLSAITAKYVENEGLEKAILEENEGEMSRKLAE-CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL 338 (702)
T ss_dssp HHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHH-HHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC
T ss_pred HHHHHHHHhhcChHHHHHHHHhhccccccHHHHH-HHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC
Confidence 988753111 000 00011111 123467889999999999999999999999999999999999999
Q ss_pred CCCcEEEE----ec---CCCChhHHHhhhccccCCC--CCccEEEEeCccch
Q 007774 403 PKVKCIIQ----YD---SAGEATEYVHRVGRTARLG--ERGDSLLFLQPVEM 445 (590)
Q Consensus 403 p~v~~VI~----~d---~p~s~~~yiqr~GRt~R~g--~~g~~i~~l~~~e~ 445 (590)
|++++||+ || .|.+..+|+||+||+||.| ..|.|++++.+.+.
T Consensus 339 p~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 339 PARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp CBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred CceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999 76 7899999999999999998 57899999888773
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-43 Score=404.88 Aligned_cols=377 Identities=20% Similarity=0.222 Sum_probs=260.6
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 35 ~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
..++|. |+++|.++++.++.|++++++||||||||++|.+|++..+. .+.++||++||++|+.|+++.+.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~---------~g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---------TTCEEEEEESSHHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---------cCCeEEEECChHHHHHHHHHHHH
Confidence 567897 99999999999999999999999999999999999998874 35789999999999999999999
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHH
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il 194 (590)
.++. .++.++|+.... .+++|+|+||++|.+++.. ....+.++++|||||||++.+++++..++.++
T Consensus 151 ~~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 151 AEFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp HHHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHH
Confidence 8754 467788876543 3578999999999988876 34566899999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHh---hcCCCEEEecCCCCCCCCcccccccC---ccccchh
Q 007774 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI---SLETPVLIGLDEKKLPEDKSHVRFGS---LESDVKE 268 (590)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~---~l~~p~~i~~~~~~~~~~~~~~~~~~---~~~~~~~ 268 (590)
..++. ..|++++|||+++..+ ++.+ ....+..+........+......... .......
T Consensus 218 ~~l~~---------------~~~il~LSATi~n~~e-~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~ 281 (1010)
T 2xgj_A 218 ILLPD---------------KVRYVFLSATIPNAME-FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDE 281 (1010)
T ss_dssp HHSCT---------------TCEEEEEECCCTTHHH-HHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECT
T ss_pred HhcCC---------------CCeEEEEcCCCCCHHH-HHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeecc
Confidence 98875 7899999999987543 3332 23445444333221110000000000 0000000
Q ss_pred h-------ccCCCccccccccccC---CcccceeEEEEe-----cCCChHHHHHHHHHhhhcccCCceEEEEecchhhHH
Q 007774 269 E-------VEHPSTTMRSTTEDFK---LPAQLVQRYVKV-----PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (590)
Q Consensus 269 ~-------~~~~~~~~~~~~~~~~---~~~~l~~~~~~~-----~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~ 333 (590)
. ................ .+..-....... .....+..+...+.. ....++||||+++..++
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~----~~~~~~IVF~~sr~~~e 357 (1010)
T 2xgj_A 282 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK----KKYNPVIVFSFSKRDCE 357 (1010)
T ss_dssp TCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHH----HTCCSEEEEESSHHHHH
T ss_pred ccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh----cCCCCEEEEECCHHHHH
Confidence 0 0000000000000000 000000000000 002333444444433 23569999999999999
Q ss_pred HHHHhhhhccCCCCCC---------------Chh-----HHH--hhhcCcceEeccCCCChHHHHHHHHHhhccCccEEE
Q 007774 334 FHYSLLSEFQWSPHSQ---------------PDM-----ELK--QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLL 391 (590)
Q Consensus 334 ~~~~~l~~~~~~~~~~---------------~~~-----~~~--~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLi 391 (590)
.++..|.......... ..+ ... .......+..+||+|++.+|..+++.|++|..+|||
T Consensus 358 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLV 437 (1010)
T 2xgj_A 358 ELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 437 (1010)
T ss_dssp HHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 9999997754322100 000 000 011234588899999999999999999999999999
Q ss_pred eccccccCCCCCCCcEEEE----ecC----CCChhHHHhhhccccCCCC--CccEEEEeCcc-chHHHHHHHHc
Q 007774 392 STDVAARGLDFPKVKCIIQ----YDS----AGEATEYVHRVGRTARLGE--RGDSLLFLQPV-EMDYLQDLEKH 454 (590)
Q Consensus 392 aTdv~~rGlDip~v~~VI~----~d~----p~s~~~yiqr~GRt~R~g~--~g~~i~~l~~~-e~~~~~~l~~~ 454 (590)
||+++++|||+|++++||+ ||. |.++.+|+||+||+||.|. .|.+++++.+. +...+..+...
T Consensus 438 AT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 438 ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp EEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred EehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhC
Confidence 9999999999999999999 999 8999999999999999996 59999999875 66666666443
No 32
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.1e-44 Score=390.87 Aligned_cols=367 Identities=17% Similarity=0.202 Sum_probs=261.6
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|+ +||++|..++|.++.|+ +++++||+|||++|.+|++...+. |..++||+||++||.|.++++..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHHH
Confidence 4799 79999999999999997 999999999999999999755432 45799999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccC-----CCCCCceeEEEEechhhhh-hc----
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL-EL---- 184 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~ll-~~---- 184 (590)
+...+ .+.+++++||.+... +....+++|++||||+| +|+|...- .+.+..+.++||||||+|+ |+
T Consensus 175 l~~~l-GLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 175 VHRFL-GLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp HHHHT-TCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred HHhhc-CCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 98855 578889999987533 33344689999999999 78887642 3566789999999999999 53
Q ss_pred -----------CchHHHHHHHHHhccCCCCCCCCCCCccccCceEE-----------------EEeecccchHHHHH---
Q 007774 185 -----------GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNL-----------------LLSATLNEKVNHLA--- 233 (590)
Q Consensus 185 -----------gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~i-----------------l~SAT~~~~~~~l~--- 233 (590)
+|...+..|+..++... .-....+.+|++ ++|||.+..+..+.
T Consensus 252 LiiSg~~~~~~~~y~~i~~iv~~L~~~~------dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL 325 (922)
T 1nkt_A 252 LIISGPADGASNWYTEFARLAPLMEKDV------HYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNAL 325 (922)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHSCBTT------TEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHH
T ss_pred eeecCCCCcchhHHHHHHHHHHhCcccc------cceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHH
Confidence 58899999999997310 000111268888 99999875333321
Q ss_pred --Hhhc-CCCEE-------EecCCCCCCCCcccccccC-ccccc--hhhc--cCCCcc------------------cccc
Q 007774 234 --KISL-ETPVL-------IGLDEKKLPEDKSHVRFGS-LESDV--KEEV--EHPSTT------------------MRST 280 (590)
Q Consensus 234 --~~~l-~~p~~-------i~~~~~~~~~~~~~~~~~~-~~~~~--~~~~--~~~~~~------------------~~~~ 280 (590)
...+ ++..+ +.++... .......++.. ....+ +..+ ...... ++..
T Consensus 326 ~A~~l~~~d~dYiV~dg~vviVDe~T-GR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGT 404 (922)
T 1nkt_A 326 KAKELFSRDKDYIVRDGEVLIVDEFT-GRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGT 404 (922)
T ss_dssp HHHHHCCBTTTEEECSSCEEEBCSSS-CCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESC
T ss_pred HHHHHhhcccceeeecCceEEEeccc-CcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccC
Confidence 1122 22222 2222110 00000000000 00000 0000 000000 0000
Q ss_pred -------------ccccCCccc------ceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhh
Q 007774 281 -------------TEDFKLPAQ------LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341 (590)
Q Consensus 281 -------------~~~~~~~~~------l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~ 341 (590)
..-..+|.+ -.+.++.++...|...+...+.... ..+.++||||+|++.++.++..|..
T Consensus 405 a~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~ 482 (922)
T 1nkt_A 405 AQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTK 482 (922)
T ss_dssp CGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHH
Confidence 000111111 1123455566778888888876543 2457899999999999999999998
Q ss_pred ccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCC----------------
Q 007774 342 FQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV---------------- 405 (590)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v---------------- 405 (590)
. ++++..|||++.+.++..+.+.|+.| .|+||||+|+||+||+.+
T Consensus 483 ~-----------------Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~ 543 (922)
T 1nkt_A 483 R-----------------RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGL 543 (922)
T ss_dssp T-----------------TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTC
T ss_pred C-----------------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccc
Confidence 7 78889999999888888888888877 799999999999999975
Q ss_pred ------------------------------------cEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 406 ------------------------------------KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 406 ------------------------------------~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
.+||+|+.|.|...|+||+|||||.|.+|.++.|++..|.
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 544 DPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999988764
No 33
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7.4e-47 Score=412.75 Aligned_cols=394 Identities=13% Similarity=0.113 Sum_probs=276.2
Q ss_pred CccC-CCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 19 SFSS-LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 19 ~f~~-l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.|.. +++++.+.+.|. . ....++|+|+.++|.++.|+|+++.||||||||++|++|+++.+.. .+.++|
T Consensus 150 ~~~~~l~~~~~~~~~l~-~-~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vL 219 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAIT-Q-AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTL 219 (618)
T ss_dssp CCC---------CEECB-C-CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEE
T ss_pred cccccccchHHHHHHHh-h-ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEE
Confidence 3455 667777777773 2 2578999999999999999999999999999999999999998865 356799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
|++|||+||.|+++.+.. ..+++ .++. .. .....+..+.++|.+.+...+... ..+.++++||+||
T Consensus 220 vl~PtreLa~Qi~~~l~~-------~~v~~-~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 285 (618)
T 2whx_A 220 ILAPTRVVAAEMEEALRG-------LPIRY-QTPA-VK---SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 285 (618)
T ss_dssp EEESSHHHHHHHHHHTTT-------SCEEE-CCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEES
T ss_pred EEcChHHHHHHHHHHhcC-------CceeE-eccc-ce---eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEEC
Confidence 999999999999988762 12221 1111 00 001123346677777777665543 3467899999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccc
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~ 257 (590)
||++ +++|...+..++..++.. .+|+++||||++..+..+.. .++..+.+...
T Consensus 286 ah~~-~~~~~~~~~~i~~~l~~~--------------~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~--------- 338 (618)
T 2whx_A 286 AHFT-DPCSVAARGYISTRVEMG--------------EAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE--------- 338 (618)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHHT--------------SCEEEEECSSCTTCCCSSCC---CSSCEEEEECC---------
T ss_pred CCCC-CccHHHHHHHHHHHhccc--------------CccEEEEECCCchhhhhhhc---cCCceeeeccc---------
Confidence 9998 888999999999888632 79999999999876543222 12222222111
Q ss_pred cccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
.|. .+...+...+.. ...++||||+|++.++.+++
T Consensus 339 ----------------------------~~~------------~~~~~ll~~l~~-----~~~~~LVF~~s~~~a~~l~~ 373 (618)
T 2whx_A 339 ----------------------------IPE------------RSWNTGFDWITD-----YQGKTVWFVPSIKAGNDIAN 373 (618)
T ss_dssp ----------------------------CCS------------SCCSSSCHHHHH-----CCSCEEEECSSHHHHHHHHH
T ss_pred ----------------------------CCH------------HHHHHHHHHHHh-----CCCCEEEEECChhHHHHHHH
Confidence 000 000111222322 25799999999999999999
Q ss_pred hhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEE---------
Q 007774 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI--------- 408 (590)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~V--------- 408 (590)
.|... +..+..+||+ +|.++++.|++|+.+||||||++++|+|+| +++|
T Consensus 374 ~L~~~-----------------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P 431 (618)
T 2whx_A 374 CLRKS-----------------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKP 431 (618)
T ss_dssp HHHHT-----------------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEE
T ss_pred HHHHc-----------------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecc
Confidence 99886 7789999984 788899999999999999999999999997 9888
Q ss_pred -----------EEecCCCChhHHHhhhccccCCCC-CccEEEEeC---ccchHHHHHHHHcCCCCccccchhhcc-cCCc
Q 007774 409 -----------IQYDSAGEATEYVHRVGRTARLGE-RGDSLLFLQ---PVEMDYLQDLEKHGVSLTEYPLLKVLD-SFPL 472 (590)
Q Consensus 409 -----------I~~d~p~s~~~yiqr~GRt~R~g~-~g~~i~~l~---~~e~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 472 (590)
|+||.|.+.++|+||+|||||.|. .|.+++|+. +.|..++..++.. +.++++++.+... .+..
T Consensus 432 ~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~-i~l~~~~~~~~~~~~~~~ 510 (618)
T 2whx_A 432 VILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK-MLLDNIYTPEGIIPTLFG 510 (618)
T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH-HHHTTCCCTTCCCCCCCG
T ss_pred eecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH-hccccccCCcchhhhccc
Confidence 888889999999999999999975 899999998 7888888888775 3333333322110 0000
Q ss_pred CCCCccccccccccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhcCCCC
Q 007774 473 YGQKPRVKKFLTTESHPWILSLQNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSFALKE 552 (590)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f~l~~ 552 (590)
. ..... ..+..+..+...+.++|.++++.|. .+ ...-|++.+++++..+++|++..
T Consensus 511 ----~-~~~~~----------------~~~~~~~~l~~~~~~~f~~ll~~~~-~~--~~l~~~v~~~~l~~~~~~w~~~~ 566 (618)
T 2whx_A 511 ----P-EREKT----------------QAIDGEFRLRGEQRKTFVELMRRGD-LP--VWLSYKVASAGISYKDREWCFTG 566 (618)
T ss_dssp ----G-GGGGC----------------CCCTTTTCCCHHHHHHHHHHHHTTC-CC--HHHHHHHHHTTCCTTCCGGGTCC
T ss_pred ----h-hhhcc----------------ccCCceeEccHHHHHHHHHHhhccC-Cc--HHHHHHHHhcCCCccceeEEecC
Confidence 0 00000 0012223344567889999998765 22 11237888999999999999999
Q ss_pred CCc
Q 007774 553 QPS 555 (590)
Q Consensus 553 ~p~ 555 (590)
+|.
T Consensus 567 ~~~ 569 (618)
T 2whx_A 567 ERN 569 (618)
T ss_dssp CGG
T ss_pred CCc
Confidence 996
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.7e-43 Score=402.75 Aligned_cols=386 Identities=17% Similarity=0.211 Sum_probs=215.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 37 LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|+..||++|.++|+.++.|+|+++.+|||||||++|++|+++.+..... ..+.++|||+||++|+.|+++.++.+
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~----~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999988765321 23678999999999999999999999
Q ss_pred HhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCc-hHHHHHHHH
Q 007774 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF-GKEIEEILD 195 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf-~~~l~~il~ 195 (590)
+... .+.+..++||.........+..+++|+|+||++|.+++.......+.++++||+||||++.+.+. ...+..++.
T Consensus 320 ~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred hccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8743 46677888887665555555567899999999999999875444678899999999999887643 222223333
Q ss_pred HhccCCCCCCCCCCCccccCceEEEEeecccch--------HHHHHHh--hcCCCEEEecCCCC--C----CCCc-cccc
Q 007774 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAKI--SLETPVLIGLDEKK--L----PEDK-SHVR 258 (590)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~--------~~~l~~~--~l~~p~~i~~~~~~--~----~~~~-~~~~ 258 (590)
..... .....|++++|||+... ...+..+ .+............ + .... ....
T Consensus 399 ~~~~~-----------~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 467 (936)
T 4a2w_A 399 QKFNS-----------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRL 467 (936)
T ss_dssp HHHTT-----------CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEE
T ss_pred Hhhcc-----------CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEe
Confidence 22110 11258999999999521 1222221 11111111111000 0 0000 0000
Q ss_pred ccC-cc-----------ccchhhccC---------CCcccccc-------------ccccCCccc---------------
Q 007774 259 FGS-LE-----------SDVKEEVEH---------PSTTMRST-------------TEDFKLPAQ--------------- 289 (590)
Q Consensus 259 ~~~-~~-----------~~~~~~~~~---------~~~~~~~~-------------~~~~~~~~~--------------- 289 (590)
... .. ......... ........ ......+..
T Consensus 468 ~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~ 547 (936)
T 4a2w_A 468 VKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTE 547 (936)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 000 00 000000000 00000000 000000000
Q ss_pred -----------------------ceeEE------------------------------E-EecCCChHHHHHHHHHhhhc
Q 007774 290 -----------------------LVQRY------------------------------V-KVPCGSRLAVLLSILKHLFD 315 (590)
Q Consensus 290 -----------------------l~~~~------------------------------~-~~~~~~k~~~L~~~l~~~~~ 315 (590)
+...+ . ......|+..|..+|...+.
T Consensus 548 ~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~ 627 (936)
T 4a2w_A 548 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 627 (936)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc
Confidence 00000 0 00135678888888887665
Q ss_pred ccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhc-cCccEEEecc
Q 007774 316 TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLSTD 394 (590)
Q Consensus 316 ~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~-~~~~vLiaTd 394 (590)
...+.++||||++++.++.++..|......... ....+.|.....+||+|++.+|.+++++|++ |+.+|||||+
T Consensus 628 ~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~i-----k~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~ 702 (936)
T 4a2w_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYI-----KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 702 (936)
T ss_dssp SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSC-----CCEEC----------------------------CCSEEEEEC
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCcccccc-----ceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC
Confidence 456789999999999999999999864110000 0001225556677999999999999999999 9999999999
Q ss_pred ccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 395 VAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 395 v~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|+.+.+.
T Consensus 703 ~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 703 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp C------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred chhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999999999999999999 999 78999999887543
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-43 Score=394.25 Aligned_cols=335 Identities=22% Similarity=0.293 Sum_probs=243.3
Q ss_pred CHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEE
Q 007774 26 HSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (590)
Q Consensus 26 ~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g------~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil 99 (590)
+..+.+.+.+.+|| .||++|.++++.++.+ ++++++|+||||||++|++|+++.+.. |.+++|+
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvl 423 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFM 423 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEE
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEE
Confidence 34566666678999 6999999999999875 599999999999999999999998754 5679999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH---HHHhcCC-CcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
+||++||.|+++.+.+++... .+.++.++|+...... ...+..+ ++|+|+||+.+.+. +.+.+++++|+
T Consensus 424 aPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~------~~~~~l~lVVI 496 (780)
T 1gm5_A 424 VPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED------VHFKNLGLVII 496 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC------CCCSCCCEEEE
T ss_pred eCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh------hhccCCceEEe
Confidence 999999999999999998643 3667888888776543 3344454 99999999988652 34679999999
Q ss_pred echhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcc
Q 007774 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (590)
Q Consensus 176 DEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~ 255 (590)
||||++ |+.. ... +. .....+++++||||+.+...........+...+...
T Consensus 497 DEaHr~---g~~q--r~~---l~------------~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~--------- 547 (780)
T 1gm5_A 497 DEQHRF---GVKQ--REA---LM------------NKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEM--------- 547 (780)
T ss_dssp ESCCCC----------CC---CC------------SSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCC---------
T ss_pred cccchh---hHHH--HHH---HH------------HhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeecc---------
Confidence 999984 2211 100 10 011268999999998765444333221111111100
Q ss_pred cccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchh-----
Q 007774 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD----- 330 (590)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~----- 330 (590)
|.........+....+...+...+.... ..+.+++|||++++
T Consensus 548 -------------------------------p~~r~~i~~~~~~~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l 594 (780)
T 1gm5_A 548 -------------------------------PPGRKEVQTMLVPMDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKL 594 (780)
T ss_dssp -------------------------------CSSCCCCEECCCCSSTHHHHHHHHHHHT--TTSCCBCCBCCCC------
T ss_pred -------------------------------CCCCcceEEEEeccchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhh
Confidence 0000000111122344556667776654 34678999999764
Q ss_pred ---hHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcE
Q 007774 331 ---AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (590)
Q Consensus 331 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~ 407 (590)
.++.+++.|... .+++..+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++
T Consensus 595 ~~~~a~~l~~~L~~~--------------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 595 NVKSAVEMYEYLSKE--------------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp --CHHHHHHHSGGGS--------------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCE
T ss_pred hHHHHHHHHHHHHhh--------------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCE
Confidence 456666666651 134778999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-ChhHHHhhhccccCCCCCccEEEEeCccch---HHHHHHHH
Q 007774 408 IIQYDSAG-EATEYVHRVGRTARLGERGDSLLFLQPVEM---DYLQDLEK 453 (590)
Q Consensus 408 VI~~d~p~-s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~---~~~~~l~~ 453 (590)
||++|+|. +...|.||+||+||.|+.|.|++++.|.+. ..+..+++
T Consensus 661 VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl~~l~~ 710 (780)
T 1gm5_A 661 MVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFTL 710 (780)
T ss_dssp EEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHHHHHHh
Confidence 99999996 788999999999999999999999885333 34445544
No 36
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-42 Score=372.39 Aligned_cols=359 Identities=19% Similarity=0.199 Sum_probs=249.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.|+++|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++|||+||++|+.||.+.+.++.. .
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~-~ 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFN-L 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBC-S
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhC-c
Confidence 4999999999999999 99999999999999999999988752 356799999999999999999998853 2
Q ss_pred CCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccC
Q 007774 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (590)
Q Consensus 121 ~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~ 200 (590)
....+..+.|+...... .....+++|+|+||+++...+.. ..+.+.++++||+||||++.+......+...+.....
T Consensus 79 ~~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~- 155 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK- 155 (494)
T ss_dssp CGGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS-
T ss_pred chhheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCC-
Confidence 33456677777665433 33334689999999999998875 4456788999999999999876544445455444432
Q ss_pred CCCCCCCCCCccccCceEEEEeecccchHHHHHH---hhcCCCEEEecCCC-CCCCCccccccc----Cccccchh----
Q 007774 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK---ISLETPVLIGLDEK-KLPEDKSHVRFG----SLESDVKE---- 268 (590)
Q Consensus 201 ~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~---~~l~~p~~i~~~~~-~~~~~~~~~~~~----~~~~~~~~---- 268 (590)
..+++++|||+......+.. .....+..+..... ............ ........
T Consensus 156 --------------~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (494)
T 1wp9_A 156 --------------NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKL 221 (494)
T ss_dssp --------------SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHH
T ss_pred --------------CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHH
Confidence 68999999999754444333 22212211111111 000000000000 00000000
Q ss_pred -------------hccCCCccc--c------------------ccccccC---------------------CcccceeEE
Q 007774 269 -------------EVEHPSTTM--R------------------STTEDFK---------------------LPAQLVQRY 294 (590)
Q Consensus 269 -------------~~~~~~~~~--~------------------~~~~~~~---------------------~~~~l~~~~ 294 (590)
......... . .....+. ....+..++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (494)
T 1wp9_A 222 LREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301 (494)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 000000000 0 0000000 000000000
Q ss_pred -----------------------------------EEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhh
Q 007774 295 -----------------------------------VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (590)
Q Consensus 295 -----------------------------------~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l 339 (590)
.......|+..|..++........+.++||||++.+.++.+++.|
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L 381 (494)
T 1wp9_A 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNEL 381 (494)
T ss_dssp HHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHH
Confidence 000345678888888887654345789999999999999999999
Q ss_pred hhccCCCCCCChhHHHhhhcCcceEeccC--------CCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEe
Q 007774 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHG--------NMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (590)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~v~~lhg--------~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~ 411 (590)
... ++.+..+|| +|+..+|.+++++|++|+..|||||+++++|+|+|++++||+|
T Consensus 382 ~~~-----------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~ 444 (494)
T 1wp9_A 382 VKD-----------------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFY 444 (494)
T ss_dssp HHT-----------------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEES
T ss_pred HHc-----------------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEe
Confidence 886 778899999 9999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 412 d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
|+|+++..|+||+||+||.|+ |.++.|+.+..
T Consensus 445 d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 445 EPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp SCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred CCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 999999999999999999998 99999998854
No 37
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.2e-45 Score=388.42 Aligned_cols=372 Identities=14% Similarity=0.132 Sum_probs=255.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 38 GFEAPTKVQAQAIPVILSGRHV-LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il~g~dv-lv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
|+.+|+|+|+ +||.++.++++ ++.||||||||++|++|+++.+.. .+.++||++|||+||.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRG- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcC-
Confidence 7889999985 79999999887 999999999999999999987654 357799999999999999998752
Q ss_pred HhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHH
Q 007774 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~ 196 (590)
..+....+.... ....+..|.++|+|.+..++... ..+.++++||+||||++ +.++...+..+...
T Consensus 71 ------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 71 ------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp ------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred ------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 122222111111 12234679999999998888754 44678999999999976 54444444444333
Q ss_pred hccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCcc
Q 007774 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTT 276 (590)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (590)
... ...|+++||||++..+..+ ...++..+.....
T Consensus 137 ~~~--------------~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~---------------------------- 171 (451)
T 2jlq_A 137 VEM--------------GEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE---------------------------- 171 (451)
T ss_dssp HHT--------------TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC----------------------------
T ss_pred hcC--------------CCceEEEEccCCCccchhh---hcCCCceEecCcc----------------------------
Confidence 321 2689999999997644322 1222322222100
Q ss_pred ccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHh
Q 007774 277 MRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQ 356 (590)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 356 (590)
.|.. . + . .+...+.. ..+++||||+|++.++.+++.|...
T Consensus 172 ---------~p~~--~-~-----~----~~~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~~-------------- 211 (451)
T 2jlq_A 172 ---------IPER--S-W-----N----TGFDWITD-----YQGKTVWFVPSIKAGNDIANCLRKS-------------- 211 (451)
T ss_dssp ---------CCSS--C-C-----S----SSCHHHHH-----CCSCEEEECSSHHHHHHHHHHHHTT--------------
T ss_pred ---------CCch--h-h-----H----HHHHHHHh-----CCCCEEEEcCCHHHHHHHHHHHHHc--------------
Confidence 0000 0 0 0 01122332 2569999999999999999999876
Q ss_pred hhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEec--------------------CCCC
Q 007774 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD--------------------SAGE 416 (590)
Q Consensus 357 ~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d--------------------~p~s 416 (590)
++.+..+||++. .++++.|++|+.+|||||+++++|+|+|+ ++||+|| .|.+
T Consensus 212 ---g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s 283 (451)
T 2jlq_A 212 ---GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVT 283 (451)
T ss_dssp ---TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred ---CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCC
Confidence 678889999764 57999999999999999999999999999 9999999 9999
Q ss_pred hhHHHhhhccccCCCC-CccEEEEeCccc--hHHH-----HHHHHcCCCCccccchhhcccCCcCCCCccccccccccch
Q 007774 417 ATEYVHRVGRTARLGE-RGDSLLFLQPVE--MDYL-----QDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESH 488 (590)
Q Consensus 417 ~~~yiqr~GRt~R~g~-~g~~i~~l~~~e--~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (590)
..+|+||+|||||.|. .|.+++|....+ ...+ ..+...+....+ .++..+.. +.. ...
T Consensus 284 ~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~----~e~-~~~----- 349 (451)
T 2jlq_A 284 PASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE----GIIPTLFG----PER-EKT----- 349 (451)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT----CCCCCCCG----GGG-GGC-----
T ss_pred HHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChh----HhHHhhcC----Cch-hhc-----
Confidence 9999999999999998 888888864432 1111 111122222111 01010000 000 000
Q ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhcCCCCCC
Q 007774 489 PWILSLQNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSFALKEQP 554 (590)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f~l~~~p 554 (590)
.....+..+...++++|.++++.|.-+. ...|++.++++...+++|+...+|
T Consensus 350 -----------~~~~~~~~l~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 401 (451)
T 2jlq_A 350 -----------QAIDGEFRLRGEQRKTFVELMRRGDLPV---WLSYKVASAGISYKDREWCFTGER 401 (451)
T ss_dssp -----------CCCTTTTCCCHHHHHHHHHHHHTSCCCH---HHHHHHHHTTCCTTCCGGGTCSCG
T ss_pred -----------cCCCcccccCchhHHHHHHHHhhcCCcH---HHhHHHHHcCCCcccchhhhcCCC
Confidence 0011122233456788999998886543 467888999999999999998888
No 38
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.1e-45 Score=388.08 Aligned_cols=356 Identities=16% Similarity=0.158 Sum_probs=244.8
Q ss_pred HHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcC
Q 007774 52 VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGG 131 (590)
Q Consensus 52 ~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg 131 (590)
.++.|+|++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+..+ .+....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQA 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC-------CeEEeccc
Confidence 46789999999999999999999999998764 3568999999999999999988733 12211111
Q ss_pred CchHHHHHHhcCCCcEEEECChHHHHHHhccC-------CCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCC
Q 007774 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTS-------SFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGS 204 (590)
Q Consensus 132 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~-------~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~ 204 (590)
. -.|+||+++++++.+.. ...+.++++||+||||++ +.++...+..+...++.
T Consensus 69 ~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~----- 128 (440)
T 1yks_A 69 F--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA----- 128 (440)
T ss_dssp C--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-----
T ss_pred c--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-----
Confidence 0 03888888765554321 123679999999999998 54454444444444432
Q ss_pred CCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCcccccccccc
Q 007774 205 IGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDF 284 (590)
Q Consensus 205 ~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (590)
..+|+++||||++..+..+... ..|... .
T Consensus 129 ---------~~~~~l~~SAT~~~~~~~~~~~--~~~~~~-~--------------------------------------- 157 (440)
T 1yks_A 129 ---------NESATILMTATPPGTSDEFPHS--NGEIED-V--------------------------------------- 157 (440)
T ss_dssp ---------TSCEEEEECSSCTTCCCSSCCC--SSCEEE-E---------------------------------------
T ss_pred ---------CCceEEEEeCCCCchhhhhhhc--CCCeeE-e---------------------------------------
Confidence 1699999999997654432211 001000 0
Q ss_pred CCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceE
Q 007774 285 KLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF 364 (590)
Q Consensus 285 ~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ 364 (590)
...++...+ ..+...+.. .+.++||||++++.++.+++.|+.. ++.+.
T Consensus 158 ---------~~~~~~~~~-~~~~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~~-----------------~~~v~ 205 (440)
T 1yks_A 158 ---------QTDIPSEPW-NTGHDWILA-----DKRPTAWFLPSIRAANVMAASLRKA-----------------GKSVV 205 (440)
T ss_dssp ---------ECCCCSSCC-SSSCHHHHH-----CCSCEEEECSCHHHHHHHHHHHHHT-----------------TCCEE
T ss_pred ---------eeccChHHH-HHHHHHHHh-----cCCCEEEEeCCHHHHHHHHHHHHHc-----------------CCCEE
Confidence 000011100 011122222 2579999999999999999999876 77899
Q ss_pred eccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEE-------------------ecCCCChhHHHhhhc
Q 007774 365 RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ-------------------YDSAGEATEYVHRVG 425 (590)
Q Consensus 365 ~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~-------------------~d~p~s~~~yiqr~G 425 (590)
.+|| .+|.++++.|++|+.+|||||+++++|+|+| +++||+ |+.|.+.++|+||+|
T Consensus 206 ~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~G 280 (440)
T 1yks_A 206 VLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRG 280 (440)
T ss_dssp ECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHT
T ss_pred Eecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhcc
Confidence 9999 4688999999999999999999999999999 999996 999999999999999
Q ss_pred cccCC-CCCccEEEEe---CccchHHHHHHHHcCCCCccccchhhc-ccCCcCCCCccccccccccchhhHHHHHHHHHH
Q 007774 426 RTARL-GERGDSLLFL---QPVEMDYLQDLEKHGVSLTEYPLLKVL-DSFPLYGQKPRVKKFLTTESHPWILSLQNALES 500 (590)
Q Consensus 426 Rt~R~-g~~g~~i~~l---~~~e~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (590)
|+||. |+.|.|++|+ .+.|..++..++.. +.+.+.++..-. ..+.. .-+..+ .
T Consensus 281 R~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~-~~~~~~~l~~~~~~~~~~--------------------~~~~~~-~ 338 (440)
T 1yks_A 281 RIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS-MLLDNMEVRGGMVAPLYG--------------------VEGTKT-P 338 (440)
T ss_dssp TSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH-HHHTTSCCGGGCCCCCST--------------------THHHHS-S
T ss_pred ccCCCCCCCceEEEEeccCChhhhhhhhhhhHH-hccccccccccccccccc--------------------hhhccC-C
Confidence 99997 6899999996 67888888888764 223333222111 00000 011111 1
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhcCCCCCCc
Q 007774 501 FIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSFALKEQPS 555 (590)
Q Consensus 501 ~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f~l~~~p~ 555 (590)
.+..+..+...++++|.+++++|..+. ...|++.+++++..+++|++..+|.
T Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (440)
T 1yks_A 339 VSPGEMRLRDDQRKVFRELVRNCDLPV---WLSWQVAKAGLKTNDRKWCFEGPEE 390 (440)
T ss_dssp SCTTTTCCCHHHHHHHHHHHHTTCCCH---HHHHHHHHTTCCTTCCGGGSCSCGG
T ss_pred CCCcccccChhHHHHHHHHHHhcCCch---hhhhhhhhcCCceeeeeEEecCCCc
Confidence 245566777889999999999886432 1358889999999999999999997
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.3e-42 Score=390.77 Aligned_cols=379 Identities=17% Similarity=0.195 Sum_probs=256.9
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHH
Q 007774 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (590)
Q Consensus 33 l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 112 (590)
+...++|+ |+++|.++|+.++.|+|+++.||||||||++|++|+...+. .+.++||++||++|+.|+++.
T Consensus 32 ~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---------~g~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 32 PARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---------NMTKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------TTCEEEEEESCGGGHHHHHHH
T ss_pred HHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHH
Confidence 33467887 99999999999999999999999999999999999887753 367899999999999999999
Q ss_pred HHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHH
Q 007774 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 192 (590)
Q Consensus 113 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~ 192 (590)
+..++ ....++.++|+.... ..++|+|+||++|.+++... ...+.++++||+||||++.+++|...+..
T Consensus 102 l~~~~---~~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViDEaH~l~d~~~g~~~e~ 170 (997)
T 4a4z_A 102 FKETF---DDVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYVNDQDRGVVWEE 170 (997)
T ss_dssp HHTTC-----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEECCTTCCCTTCTTCCHHH
T ss_pred HHHHc---CCCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEECcccccccchHHHHHH
Confidence 98763 346678888876532 45799999999999988763 34567999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhc---CCCEEEec-CCCCCCCCccccc----ccCccc
Q 007774 193 ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL---ETPVLIGL-DEKKLPEDKSHVR----FGSLES 264 (590)
Q Consensus 193 il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l---~~p~~i~~-~~~~~~~~~~~~~----~~~~~~ 264 (590)
++..++. ..|++++|||+++..+ ++.+.. ..+..+.. .....+-...... +.....
T Consensus 171 ii~~l~~---------------~v~iIlLSAT~~n~~e-f~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~ 234 (997)
T 4a4z_A 171 VIIMLPQ---------------HVKFILLSATVPNTYE-FANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQ 234 (997)
T ss_dssp HHHHSCT---------------TCEEEEEECCCTTHHH-HHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECT
T ss_pred HHHhccc---------------CCCEEEEcCCCCChHH-HHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccc
Confidence 9999875 7999999999987553 333322 12322222 2111110000000 000000
Q ss_pred c---chh-------hccC-----CCcc------------c------cc-------------c-----ccccCCcccceeE
Q 007774 265 D---VKE-------EVEH-----PSTT------------M------RS-------------T-----TEDFKLPAQLVQR 293 (590)
Q Consensus 265 ~---~~~-------~~~~-----~~~~------------~------~~-------------~-----~~~~~~~~~l~~~ 293 (590)
. ... .... .... . .. . ......+.....+
T Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (997)
T 4a4z_A 235 NSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFF 314 (997)
T ss_dssp TCCBCHHHHHHHHHHHC---------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 000 0000 0000 0 00 0 0000011112223
Q ss_pred EEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCC---------------ChhH-----
Q 007774 294 YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ---------------PDME----- 353 (590)
Q Consensus 294 ~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~---------------~~~~----- 353 (590)
+...+...+...+...+.. ....++||||++++.++.++..|.......... ..++
T Consensus 315 ~~~~~~~~~~~~li~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 390 (997)
T 4a4z_A 315 TQDGPSKKTWPEIVNYLRK----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQ 390 (997)
T ss_dssp --CCCCTTHHHHHHHHHHH----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHH
T ss_pred cccccchhHHHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 3334456667777777766 345799999999999999999997754332100 0000
Q ss_pred --HHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC---------CChhHHHh
Q 007774 354 --LKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA---------GEATEYVH 422 (590)
Q Consensus 354 --~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p---------~s~~~yiq 422 (590)
.-..+....+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++.+|+ ++.| .++.+|+|
T Consensus 391 ~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k~dg~~~~~~s~~~y~Q 469 (997)
T 4a4z_A 391 ILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRKHDGNGLRELTPGEFTQ 469 (997)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEEEETTEEEECCHHHHHH
T ss_pred HHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-eccccccCccCCCCCHHHHhH
Confidence 00112344688999999999999999999999999999999999999999955554 4444 49999999
Q ss_pred hhccccCCC--CCccEEEEe--CccchHHHHHHHH
Q 007774 423 RVGRTARLG--ERGDSLLFL--QPVEMDYLQDLEK 453 (590)
Q Consensus 423 r~GRt~R~g--~~g~~i~~l--~~~e~~~~~~l~~ 453 (590)
|+|||||.| ..|.++++. .+.+...+..+..
T Consensus 470 r~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~ 504 (997)
T 4a4z_A 470 MAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM 504 (997)
T ss_dssp HHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHH
T ss_pred HhcccccCCCCcceEEEEecCCCcchHHHHHHHhc
Confidence 999999998 466777776 2345566665543
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2e-41 Score=393.66 Aligned_cols=327 Identities=20% Similarity=0.246 Sum_probs=254.7
Q ss_pred CCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhc----CC--cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 007774 22 SLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS----GR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (590)
Q Consensus 22 ~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~----g~--dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~ 95 (590)
.+++++.....+.+.+||+ +||+|.++|+.++. |+ |++++++||||||++|+.+++..+. .+.+
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~ 654 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQ 654 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCe
Confidence 3567788888887889998 89999999999986 66 9999999999999999999988763 3568
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH---HHHhcCC-CcEEEECChHHHHHHhccCCCCCCcee
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLR 171 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~ 171 (590)
++|++||++||.|+++.+.+++..++ +.+..+.|....... ...+..+ ++|+|+||+.+. ..+.+.+++
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~ 727 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLG 727 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccc
Confidence 99999999999999999998865432 456666665544433 2344454 999999998763 234568999
Q ss_pred EEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCC
Q 007774 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (590)
Q Consensus 172 ~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~ 251 (590)
+||+||||+ |......++..++. ..++++||||+.+....+....+.++..+......
T Consensus 728 lvIiDEaH~-----~g~~~~~~l~~l~~---------------~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~-- 785 (1151)
T 2eyq_A 728 LLIVDEEHR-----FGVRHKERIKAMRA---------------NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-- 785 (1151)
T ss_dssp EEEEESGGG-----SCHHHHHHHHHHHT---------------TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB--
T ss_pred eEEEechHh-----cChHHHHHHHHhcC---------------CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC--
Confidence 999999999 55566777777764 68999999999877666665555444332211110
Q ss_pred CCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhh
Q 007774 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~ 331 (590)
...+..++. ...+......++... ..+++++|||++++.
T Consensus 786 -----------------------------------r~~i~~~~~---~~~~~~i~~~il~~l---~~g~qvlvf~~~v~~ 824 (1151)
T 2eyq_A 786 -----------------------------------RLAVKTFVR---EYDSMVVREAILREI---LRGGQVYYLYNDVEN 824 (1151)
T ss_dssp -----------------------------------CBCEEEEEE---ECCHHHHHHHHHHHH---TTTCEEEEECCCSSC
T ss_pred -----------------------------------ccccEEEEe---cCCHHHHHHHHHHHH---hcCCeEEEEECCHHH
Confidence 001122211 122222333333333 246899999999999
Q ss_pred HHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEe
Q 007774 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (590)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~ 411 (590)
++.+++.|+.. +|+..+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||++
T Consensus 825 ~~~l~~~L~~~---------------~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 825 IQKAAERLAEL---------------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp HHHHHHHHHHH---------------CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred HHHHHHHHHHh---------------CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEe
Confidence 99999999875 457889999999999999999999999999999999999999999999999999
Q ss_pred cC-CCChhHHHhhhccccCCCCCccEEEEeCcc
Q 007774 412 DS-AGEATEYVHRVGRTARLGERGDSLLFLQPV 443 (590)
Q Consensus 412 d~-p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~ 443 (590)
++ +.++.+|+||+||+||.|+.|.|++++.+.
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 98 579999999999999999999999998764
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.4e-43 Score=395.26 Aligned_cols=383 Identities=19% Similarity=0.232 Sum_probs=232.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHH-HHHHHHH
Q 007774 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV-YEILHKL 116 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~-~~~~~~~ 116 (590)
+|. |+++|.++++.++.|+++++.+|||||||++|++|+++.+..... ...+.++|||+||++|+.|+ .+.+..+
T Consensus 5 ~~~-l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 5 MLQ-LRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp --C-CCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCC-ccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 444 999999999999999999999999999999999999998865321 12236799999999999999 9999998
Q ss_pred HhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhc-----cCCCCCCceeEEEEechhhhhhcC-chHHH
Q 007774 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH-----TSSFLHTNLRWIIFDEADRILELG-FGKEI 190 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-----~~~~~~~~l~~lVlDEah~ll~~g-f~~~l 190 (590)
+.. .+.+..++|+.........+..+++|+|+||++|.+++.. ...+.+..+++||+||||++...+ +...+
T Consensus 81 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 81 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp HTT--TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred cCc--CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 763 3677888888776655566667899999999999998853 234567889999999999986654 33333
Q ss_pred HHHHHHh-ccCCCCCCCCCCCccccCceEEEEeecccch--------HHHHHHh--hcCCCEEEecCCC--CCCCC--cc
Q 007774 191 EEILDIL-GSRNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAKI--SLETPVLIGLDEK--KLPED--KS 255 (590)
Q Consensus 191 ~~il~~l-~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~--------~~~l~~~--~l~~p~~i~~~~~--~~~~~--~~ 255 (590)
..++... ...... .........++++++|||+... ...+..+ .+........... .+... ..
T Consensus 159 ~~~l~~~~~~~~~~---~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p 235 (699)
T 4gl2_A 159 RHYLMQKLKNNRLK---KENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP 235 (699)
T ss_dssp HHHHHHHHHHHHHH---C----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC
T ss_pred HHHHHhhhcccccc---cccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC
Confidence 3333221 000000 0000000257999999999862 2222211 1111010000000 00000 00
Q ss_pred cccccCcc---------------ccchhhccCCCcccccc----------------------------------------
Q 007774 256 HVRFGSLE---------------SDVKEEVEHPSTTMRST---------------------------------------- 280 (590)
Q Consensus 256 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~---------------------------------------- 280 (590)
...+.... .................
T Consensus 236 ~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 236 CKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000000000000000
Q ss_pred --------------------------ccccCCcccc------------------eeEEEE-ecCCChHHHHHHHHHhhhc
Q 007774 281 --------------------------TEDFKLPAQL------------------VQRYVK-VPCGSRLAVLLSILKHLFD 315 (590)
Q Consensus 281 --------------------------~~~~~~~~~l------------------~~~~~~-~~~~~k~~~L~~~l~~~~~ 315 (590)
......+..+ ...... .....|+..|..+|...+.
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 0000000000 000000 0022445556666665544
Q ss_pred ccC-CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCC--------CChHHHHHHHHHhhccC
Q 007774 316 TEV-SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN--------MKQEDRRTTFGAFKTEK 386 (590)
Q Consensus 316 ~~~-~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~--------~~~~~R~~~~~~F~~~~ 386 (590)
... +.++||||++++.++.+++.|.....- ...++.+..+||+ |++.+|.+++++|++|+
T Consensus 396 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l-----------~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~ 464 (699)
T 4gl2_A 396 RTEESARGIIFTKTRQSAYALSQWITENEKF-----------AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK 464 (699)
T ss_dssp HSSSCCCEEEECSCHHHHHHHHHHHHSSCSC-----------C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC--
T ss_pred cCCCCCcEEEEECcHHHHHHHHHHHHhCccc-----------cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC
Confidence 334 789999999999999999999864110 0126788999999 99999999999999999
Q ss_pred ccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCcc
Q 007774 387 KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV 443 (590)
Q Consensus 387 ~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~ 443 (590)
.+|||||+++++|||+|+|++||+||+|+|+..|+||+||+||. |.+++++.+.
T Consensus 465 ~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~ 518 (699)
T 4gl2_A 465 INLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHS 518 (699)
T ss_dssp -CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEES
T ss_pred CcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeC
Confidence 99999999999999999999999999999999999999996544 4666666553
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-41 Score=404.17 Aligned_cols=390 Identities=16% Similarity=0.144 Sum_probs=273.5
Q ss_pred ccccccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhc-CCcEEEEccCcchHHHHHHHHHHHHHhhcCC
Q 007774 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQSYSP 86 (590)
Q Consensus 8 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~-g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~ 86 (590)
.....++++-..+.--.|..+..+.+.. .+|..++|+|.++++.++. ++|++++||||||||++|.+|+++.+..
T Consensus 894 ~~~~t~lldl~plp~s~L~~~~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~--- 969 (1724)
T 4f92_B 894 YPPPTELLDLQPLPVSALRNSAFESLYQ-DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ--- 969 (1724)
T ss_dssp CCCCCCCCCCCCCBGGGSCCHHHHTTTT-TTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH---
T ss_pred CCCCCccccCCCCCcccccCHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh---
Confidence 3344444444444333466777777753 4899999999999999875 6789999999999999999999999876
Q ss_pred CCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCC-C
Q 007774 87 RIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-F 165 (590)
Q Consensus 87 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~ 165 (590)
..+.++|+++|||+||.|.++.+.+.+.......++.++|+..... +...+++|+|+|||++..++.+... .
T Consensus 970 ----~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~ 1042 (1724)
T 4f92_B 970 ----SSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRK 1042 (1724)
T ss_dssp ----CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCH
T ss_pred ----CCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCccccc
Confidence 3456799999999999999999887654334566777777644322 2334579999999999777765333 2
Q ss_pred CCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhc-CCCEEEe
Q 007774 166 LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL-ETPVLIG 244 (590)
Q Consensus 166 ~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l-~~p~~i~ 244 (590)
.+.++++||+||+|.+.+ ..+..++.++..+.... ...+...|++++|||+++ .+.++.+.. .......
T Consensus 1043 ~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~--------~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~ 1112 (1724)
T 4f92_B 1043 NVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYIS--------SQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFN 1112 (1724)
T ss_dssp HHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHH--------HTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEE
T ss_pred ccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHH--------hhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEE
Confidence 467899999999998876 46777777776653210 001126899999999986 455555432 2222222
Q ss_pred cCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHH-------HHHHHhhhccc
Q 007774 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVL-------LSILKHLFDTE 317 (590)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L-------~~~l~~~~~~~ 317 (590)
+.... -|..+..+....+.......+ ...+... .
T Consensus 1113 ~~~~~------------------------------------RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~---~ 1153 (1724)
T 4f92_B 1113 FHPNV------------------------------------RPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH---S 1153 (1724)
T ss_dssp CCGGG------------------------------------CSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH---C
T ss_pred eCCCC------------------------------------CCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh---c
Confidence 22111 122334443334433322222 2222222 3
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCC------CChhHHH-----------hhhcCcceEeccCCCChHHHHHHHH
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHS------QPDMELK-----------QLFLRCKTFRLHGNMKQEDRRTTFG 380 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~------~~~~~~~-----------~~~~~~~v~~lhg~~~~~~R~~~~~ 380 (590)
.++++||||+|+..++..+..|......... ....+.. ......+|..+||+|++.+|..+.+
T Consensus 1154 ~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~ 1233 (1724)
T 4f92_B 1154 PKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQ 1233 (1724)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHH
T ss_pred CCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHH
Confidence 4679999999999999888766432111100 0011111 1123456889999999999999999
Q ss_pred HhhccCccEEEeccccccCCCCCCCcEEEE----ec------CCCChhHHHhhhccccCCCC--CccEEEEeCccchHHH
Q 007774 381 AFKTEKKALLLSTDVAARGLDFPKVKCIIQ----YD------SAGEATEYVHRVGRTARLGE--RGDSLLFLQPVEMDYL 448 (590)
Q Consensus 381 ~F~~~~~~vLiaTdv~~rGlDip~v~~VI~----~d------~p~s~~~yiqr~GRt~R~g~--~g~~i~~l~~~e~~~~ 448 (590)
.|++|.++|||||+++++|+|+|.+.+||. || .|.++.+|+||+|||||.|. .|.+++++.+.+..++
T Consensus 1234 lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1234 LFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp HHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHH
T ss_pred HHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHH
Confidence 999999999999999999999999999993 33 46789999999999999996 7999999999988888
Q ss_pred HHHHHcCCC
Q 007774 449 QDLEKHGVS 457 (590)
Q Consensus 449 ~~l~~~~~~ 457 (590)
+.+-..+.+
T Consensus 1314 ~~ll~~~~p 1322 (1724)
T 4f92_B 1314 KKFLYEPLP 1322 (1724)
T ss_dssp HHHTTSCBC
T ss_pred HHHhCCCCc
Confidence 877654443
No 43
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.1e-43 Score=377.28 Aligned_cols=360 Identities=16% Similarity=0.177 Sum_probs=243.0
Q ss_pred HHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEc
Q 007774 51 PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMG 130 (590)
Q Consensus 51 ~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~g 130 (590)
..+..++++++.||||||||++|++|+++.+.. .+.++||++|||+||.|+++.+..+ .+....+
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~~ 80 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL-------PVRYQTS 80 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS-------CEEECC-
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc-------eEeEEec
Confidence 345678999999999999999999999988764 3577999999999999999988621 1111111
Q ss_pred CCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhh-----hhhcCchHHHHHHHHHhccCCCCCC
Q 007774 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-----ILELGFGKEIEEILDILGSRNIGSI 205 (590)
Q Consensus 131 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-----ll~~gf~~~l~~il~~l~~~~~~~~ 205 (590)
.... .-..+..+.++|.+.+...+... ..+.++++||+||||+ ++..+|...+. ..
T Consensus 81 ~~~~-----~~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~------~~------ 141 (459)
T 2z83_A 81 AVQR-----EHQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIATKV------EL------ 141 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH------HT------
T ss_pred cccc-----CCCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHHHh------cc------
Confidence 1110 01223457788888887766543 4467999999999998 55555533321 11
Q ss_pred CCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccC
Q 007774 206 GEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFK 285 (590)
Q Consensus 206 ~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (590)
...|+++||||++..+..+... ..|...... .
T Consensus 142 --------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~--------------------------------------~ 173 (459)
T 2z83_A 142 --------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD--------------------------------------E 173 (459)
T ss_dssp --------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------------------------------C
T ss_pred --------CCccEEEEEcCCCcchhhhccC--CCCeEEecc--------------------------------------c
Confidence 1789999999998654332111 122221100 0
Q ss_pred CcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEe
Q 007774 286 LPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (590)
Q Consensus 286 ~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ 365 (590)
.|. .....+...+.. .++++||||++++.++.+++.|... ++.+..
T Consensus 174 ~~~------------~~~~~~~~~l~~-----~~~~~LVF~~s~~~~~~l~~~L~~~-----------------g~~v~~ 219 (459)
T 2z83_A 174 IPD------------RAWSSGYEWITE-----YAGKTVWFVASVKMGNEIAMCLQRA-----------------GKKVIQ 219 (459)
T ss_dssp CCS------------SCCSSCCHHHHH-----CCSCEEEECSCHHHHHHHHHHHHHT-----------------TCCEEE
T ss_pred CCc------------chhHHHHHHHHh-----cCCCEEEEeCChHHHHHHHHHHHhc-----------------CCcEEe
Confidence 000 000001122333 2579999999999999999999886 778899
Q ss_pred ccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEE--------------------ecCCCChhHHHhhhc
Q 007774 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ--------------------YDSAGEATEYVHRVG 425 (590)
Q Consensus 366 lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~--------------------~d~p~s~~~yiqr~G 425 (590)
+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ||.|.+..+|+||+|
T Consensus 220 lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~G 294 (459)
T 2z83_A 220 LNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRG 294 (459)
T ss_dssp ESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHT
T ss_pred cCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhcc
Confidence 9995 7888999999999999999999999999999 99999 779999999999999
Q ss_pred cccCCCC-CccEEEEeCcc--chHHHHHHHHcCCCCccccchhh-cccCCcCCCCccccccccccchhhHHHHHHHHHHH
Q 007774 426 RTARLGE-RGDSLLFLQPV--EMDYLQDLEKHGVSLTEYPLLKV-LDSFPLYGQKPRVKKFLTTESHPWILSLQNALESF 501 (590)
Q Consensus 426 Rt~R~g~-~g~~i~~l~~~--e~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (590)
|+||.|. .|.+++|+.+. +...+..+....+.+.++..... +..+. .+.. .++ ..
T Consensus 295 RaGR~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~p~~----------------~k~-~~ 353 (459)
T 2z83_A 295 RVGRNPNQVGDEYHYGGATSEDDSNLAHWTEAKIMLDNIHMPNGLVAQLY----GPER----------------EKA-FT 353 (459)
T ss_dssp TSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCCTTSCCCCCC----GGGG----------------GGC-CC
T ss_pred ccCCCCCCCCeEEEEEcccccchhhhhhhhhHHHHHhcCCChHHHHHhcc----CCCc----------------ccc-cc
Confidence 9999997 99999999885 43333333222122222222111 00000 0000 000 01
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhcCCCCCCc
Q 007774 502 IIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSFALKEQPS 555 (590)
Q Consensus 502 ~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f~l~~~p~ 555 (590)
+..+..+...++++|.+|+++|..+ ....|++.+++++..+++|+...+|.
T Consensus 354 ~~~~~~l~~~~~~~~~~~l~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (459)
T 2z83_A 354 MDGEYRLRGEEKKNFLELLRTADLP---VWLAYKVASNGIQYTDRKWCFDGPRT 404 (459)
T ss_dssp CTTTTCCCHHHHHHHHHHHHTSCCC---HHHHHHHHHTTCCTTCCGGGTCSCGG
T ss_pred cCcchhcchHHHHHHHHHHhhcCCC---hhHhHHHhhccCccccceeeeeCCCC
Confidence 2234456677899999999988754 45678999999999999999999994
No 44
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.4e-44 Score=396.97 Aligned_cols=373 Identities=15% Similarity=0.180 Sum_probs=247.3
Q ss_pred hCCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEE
Q 007774 36 RLGFE-----APTKVQA-----QAIPVIL------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (590)
Q Consensus 36 ~~g~~-----~~t~~Q~-----~~i~~il------~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil 99 (590)
.+||. .||++|+ ++||.++ .|+|++++||||||||++|++|+++.+.. .+.++||+
T Consensus 205 ~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lil 276 (673)
T 2wv9_A 205 GNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVL 276 (673)
T ss_dssp EEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEE
T ss_pred eccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEE
Confidence 35777 8999999 9999988 89999999999999999999999988764 35779999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccC-------CCCCCceeE
Q 007774 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS-------SFLHTNLRW 172 (590)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~-------~~~~~~l~~ 172 (590)
+|||+||.|+++.+..+ .+....+... .++||+++++++.... ...+.++++
T Consensus 277 aPTr~La~Q~~~~l~~~-------~i~~~~~~l~--------------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~l 335 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGL-------PVRYLTPAVQ--------------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNL 335 (673)
T ss_dssp ESSHHHHHHHHHHTTTS-------CCEECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSE
T ss_pred ccHHHHHHHHHHHHhcC-------Ceeeeccccc--------------ccCCHHHHHHHHHhhhhHHHHhcccccccceE
Confidence 99999999999988743 1111111000 1566665544332211 135679999
Q ss_pred EEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCC
Q 007774 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (590)
Q Consensus 173 lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~ 252 (590)
||+||||++ +..+...+..+...++. ..+|+++||||++..+..+... ..|.. .+..
T Consensus 336 vViDEaH~~-~~~~~~~~~~l~~~~~~--------------~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~----- 392 (673)
T 2wv9_A 336 FVMDEAHFT-DPASIAARGYIATRVEA--------------GEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSS----- 392 (673)
T ss_dssp EEEESTTCC-CHHHHHHHHHHHHHHHT--------------TSCEEEEECSSCTTCCCSSCCC--SSCEE-EEEC-----
T ss_pred EEEeCCccc-CccHHHHHHHHHHhccc--------------cCCcEEEEcCCCChhhhhhccc--CCceE-EEee-----
Confidence 999999997 33333344444444432 1689999999998653322110 00100 0000
Q ss_pred CcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhH
Q 007774 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~ 332 (590)
.++.... ..++..+.. .+.++||||++++.+
T Consensus 393 -------------------------------------------~~~~~~~-~~~l~~l~~-----~~~~~lVF~~s~~~~ 423 (673)
T 2wv9_A 393 -------------------------------------------EIPDRAW-SSGFEWITD-----YAGKTVWFVASVKMS 423 (673)
T ss_dssp -------------------------------------------CCCSSCC-SSCCHHHHS-----CCSCEEEECSSHHHH
T ss_pred -------------------------------------------ecCHHHH-HHHHHHHHh-----CCCCEEEEECCHHHH
Confidence 0000000 001122222 367999999999999
Q ss_pred HHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEE--
Q 007774 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ-- 410 (590)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~-- 410 (590)
+.+++.|+.. ++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++||+
T Consensus 424 e~la~~L~~~-----------------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 424 NEIAQCLQRA-----------------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp HHHHHHHHTT-----------------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred HHHHHHHHhC-----------------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 9999999876 7789999994 799999999999999999999999999999 999998
Q ss_pred ------------------ecCCCChhHHHhhhccccCC-CCCccEEEEe---CccchHHHHHHHHcCCCCccccchhhcc
Q 007774 411 ------------------YDSAGEATEYVHRVGRTARL-GERGDSLLFL---QPVEMDYLQDLEKHGVSLTEYPLLKVLD 468 (590)
Q Consensus 411 ------------------~d~p~s~~~yiqr~GRt~R~-g~~g~~i~~l---~~~e~~~~~~l~~~~~~~~~~~~~~~~~ 468 (590)
||+|.++++|+||+||+||. |+.|.+++|+ .+.|..++..++.. +.+..++...
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~-~~l~~~~~~~--- 557 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAK-ILLDNIHLPN--- 557 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHH-HHHHTSCBTT---
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHH-HhhhhccCCc---
Confidence 67999999999999999999 7899999996 57787777777654 1112221111
Q ss_pred cCCcCCCCccccccccccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHhhc
Q 007774 469 SFPLYGQKPRVKKFLTTESHPWILSLQNALESFIIHESKMKKLAKDAFCSWVRAYTAHRGELKRIFTLKKLHLGHVAKSF 548 (590)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~r~y~~~~~~~~~if~~~~l~~~~~a~~f 548 (590)
.+....... -|..+. .+..+..+.+.++++|.++++.+... ....|++....+....++|
T Consensus 558 g~~~a~~~~----------------~q~~~~-~~~~~~~l~~~a~~~~~~ll~~~~~~---~~l~~~~a~~~l~~~~~~w 617 (673)
T 2wv9_A 558 GLVAQLYGP----------------ERDKTY-TMDGEYRLRGEERKTFLELIKTADLP---VWLAYKVASNGIQYNDRKW 617 (673)
T ss_dssp TBCCCCCGG----------------GGGGCC-CCTTTTCCCHHHHHHHHHHHHTSCCC---HHHHHHHHHHTCCSSCCGG
T ss_pred hhhhhccch----------------hhhccc-cchhhhhHHHHHHHHHHHHHhccCCc---hhHHHHHHHhcccccCcee
Confidence 010000000 000111 13456667778888888888765422 1223444444555555678
Q ss_pred CCCCCCc
Q 007774 549 ALKEQPS 555 (590)
Q Consensus 549 ~l~~~p~ 555 (590)
++..+|.
T Consensus 618 ~~~~~~~ 624 (673)
T 2wv9_A 618 CFDGPRS 624 (673)
T ss_dssp GTSSCTT
T ss_pred EeeCCCc
Confidence 8877776
No 45
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2e-40 Score=358.80 Aligned_cols=336 Identities=15% Similarity=0.174 Sum_probs=233.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.||++|.++++.++.++++++++|||||||++|+.|+...+.. .+.++|||+||++|+.|+++.+.++.. +
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~-~ 183 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRL-F 183 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTS-S
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhc-C
Confidence 5999999999999999999999999999999999999887754 224899999999999999999988744 3
Q ss_pred CCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccC
Q 007774 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (590)
Q Consensus 121 ~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~ 200 (590)
....+..+.||...... +..+.+|+|+||+.+... ....+.++++||+||||++.. ..+..++..++.
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~- 251 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN- 251 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT-
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc-
Confidence 33556777777655433 456789999999987543 223457899999999999765 445666555543
Q ss_pred CCCCCCCCCCccccCceEEEEeecccchHHHHHH-hhcCCCEEEecCCCCCCCCccccccc--CccccchhhccCCCccc
Q 007774 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK-ISLETPVLIGLDEKKLPEDKSHVRFG--SLESDVKEEVEHPSTTM 277 (590)
Q Consensus 201 ~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~-~~l~~p~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 277 (590)
..+++++|||++.....+.. ..+..+..+.+.............+. ...........
T Consensus 252 --------------~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------ 311 (510)
T 2oca_A 252 --------------CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFT------ 311 (510)
T ss_dssp --------------CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHH------
T ss_pred --------------CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHh------
Confidence 67999999999766433222 22334444333322111000000000 00000000000
Q ss_pred cccccccCCccccee-EEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHh
Q 007774 278 RSTTEDFKLPAQLVQ-RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQ 356 (590)
Q Consensus 278 ~~~~~~~~~~~~l~~-~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 356 (590)
.... .....+ ....+....+...+..++..... ..+.++|||++ .+.++.+++.|...
T Consensus 312 -~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~-------------- 370 (510)
T 2oca_A 312 -TKLK----GKTYQEEIKIITGLSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNE-------------- 370 (510)
T ss_dssp -HHHT----TCCHHHHHHHHHTCHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTT--------------
T ss_pred -cccc----ccchHHHHHHHhccHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHc--------------
Confidence 0000 000000 00011122344556666665543 23456666666 78888899999876
Q ss_pred hhcCcceEeccCCCChHHHHHHHHHhhccCccEEEec-cccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCcc
Q 007774 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-DVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGD 435 (590)
Q Consensus 357 ~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaT-dv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~ 435 (590)
+..+..+||+|++.+|.++++.|++|+..||||| +++++|+|+|++++||++++|+++..|+||+||+||.|+.|.
T Consensus 371 ---~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~ 447 (510)
T 2oca_A 371 ---YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKT 447 (510)
T ss_dssp ---CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCC
T ss_pred ---CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCc
Confidence 4478999999999999999999999999999999 999999999999999999999999999999999999999885
Q ss_pred EEEEeC
Q 007774 436 SLLFLQ 441 (590)
Q Consensus 436 ~i~~l~ 441 (590)
+++++.
T Consensus 448 ~v~i~~ 453 (510)
T 2oca_A 448 IATVWD 453 (510)
T ss_dssp CCEEEE
T ss_pred eEEEEE
Confidence 555544
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.3e-39 Score=364.30 Aligned_cols=350 Identities=16% Similarity=0.192 Sum_probs=248.3
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhc-CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~-g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~ 94 (590)
...+|+++++++.+.+.+.+. + ..|+++|+++|+.++. ++++++.||||||||+ ++|++-.... . ....+.
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~-~---~~~~g~ 141 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE-M---PHLENT 141 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH-C---GGGGTC
T ss_pred CCCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc-c---ccCCCc
Confidence 345899999999999999655 5 6799999999988775 5679999999999999 4555522111 0 012356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
.+++++|+|+|+.|+++.+...........++....... ....+.+|+++|||++...+... ..+.++++||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lI 213 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED--HDLSRYSCII 213 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEE
Confidence 799999999999999987765532111122332221111 11246789999999999887653 3467999999
Q ss_pred Eechhh-hhhcCc-hHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCC
Q 007774 175 FDEADR-ILELGF-GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (590)
Q Consensus 175 lDEah~-ll~~gf-~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~ 252 (590)
|||||. .++..+ ...+..+....+ ..|+++||||++. +.+..+....| .+.+....
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~~~~~----------------~~~iIl~SAT~~~--~~l~~~~~~~~-vi~v~gr~--- 271 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVVKRRP----------------DLKIIIMSATLDA--EKFQRYFNDAP-LLAVPGRT--- 271 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHHHHCT----------------TCEEEEEESCSCC--HHHHHHTTSCC-EEECCCCC---
T ss_pred ecCccccccchHHHHHHHHHHHHhCC----------------CceEEEEeccccH--HHHHHHhcCCC-cccccCcc---
Confidence 999995 665332 233444443332 6899999999953 45555443333 33332221
Q ss_pred CcccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhH
Q 007774 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~ 332 (590)
..+.++|...+...........+........++++||||++++.+
T Consensus 272 -----------------------------------~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i 316 (773)
T 2xau_A 272 -----------------------------------YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEI 316 (773)
T ss_dssp -----------------------------------CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHH
T ss_pred -----------------------------------cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHH
Confidence 012333333344455544444444443334578999999999999
Q ss_pred HHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhh-----ccCccEEEeccccccCCCCCCCcE
Q 007774 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK-----TEKKALLLSTDVAARGLDFPKVKC 407 (590)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~-----~~~~~vLiaTdv~~rGlDip~v~~ 407 (590)
+.++..|...... ........++.+..+||+|++.+|.++++.|. +|..+|||||+++++|||+|+|++
T Consensus 317 ~~l~~~L~~~~~~------l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~ 390 (773)
T 2xau_A 317 EDAVRKISLEGDQ------LVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVY 390 (773)
T ss_dssp HHHHHHHHHHHHH------HHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEE
T ss_pred HHHHHHHHHHHHh------hcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEE
Confidence 9999998752100 00000113778999999999999999999999 999999999999999999999999
Q ss_pred EEEecC------------------CCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 408 IIQYDS------------------AGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 408 VI~~d~------------------p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
||++|. |.+..+|+||+|||||. +.|.|+.|+.+.+.
T Consensus 391 VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 391 VVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999877 89999999999999999 88999999887553
No 47
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.3e-39 Score=385.01 Aligned_cols=366 Identities=21% Similarity=0.279 Sum_probs=258.1
Q ss_pred CCCCCcHHHHHHHHHHh-cCCcEEEEccCcchHHHHHHHHHHHHHhhcCC--CCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 38 GFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSP--RIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il-~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~--~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
||++++++|.+++|.++ .++|++++||||||||++|.+|+++.+..... .....++.++|+++|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999987 57899999999999999999999999876432 2223467899999999999999999999
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCC-CCCCceeEEEEechhhhhhcCchHHHHHH
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-FLHTNLRWIIFDEADRILELGFGKEIEEI 193 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~~~~~l~~lVlDEah~ll~~gf~~~l~~i 193 (590)
+.+...+ +.++.++|+...... ...+++|+|+||+++..++.+... ..++.+++||+||+|.+-| ..+..++.+
T Consensus 156 ~~~~~~g-i~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYG-ITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTT-CCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCC-CEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 8877544 567788887654321 234689999999998555544221 2367899999999996655 677777777
Q ss_pred HHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCE--EEecCCCCCCCCcccccccCccccchhhcc
Q 007774 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV--LIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271 (590)
Q Consensus 194 l~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (590)
+.++.... ...+...|++++|||+++ .+.++.+.-.++. ...++..
T Consensus 231 l~rl~~~~--------~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~----------------------- 278 (1724)
T 4f92_B 231 VARAIRNI--------EMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS----------------------- 278 (1724)
T ss_dssp HHHHHHHH--------HHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG-----------------------
T ss_pred HHHHHHHH--------HhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC-----------------------
Confidence 66542100 001126899999999986 5666665433220 1111111
Q ss_pred CCCccccccccccCCcccceeEEEEecCCChH---HHHHHHHHhhh-cccCCceEEEEecchhhHHHHHHhhhhccCCCC
Q 007774 272 HPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRL---AVLLSILKHLF-DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH 347 (590)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~---~~L~~~l~~~~-~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~ 347 (590)
.-|..+.+.++.++..... ..+...+.... ....++++||||+|+..++..+..|........
T Consensus 279 -------------~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~ 345 (1724)
T 4f92_B 279 -------------FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKD 345 (1724)
T ss_dssp -------------GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTT
T ss_pred -------------CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 0123345554444443322 22222222221 112356899999999988888877754321100
Q ss_pred ---------CC------------ChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCc
Q 007774 348 ---------SQ------------PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (590)
Q Consensus 348 ---------~~------------~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~ 406 (590)
.. .+.... .+....+..+||+|++.+|..+.+.|++|.++|||||+++++|+|+|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~ 424 (1724)
T 4f92_B 346 TLGLFLREGSASTEVLRTEAEQCKNLELK-DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHT 424 (1724)
T ss_dssp STTCCSSCCTTCSSHHHHTTSCCSTHHHH-HHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSE
T ss_pred chhhhcccchhHHHHHHhhhcccccHHHH-HHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCce
Confidence 00 011111 23345688899999999999999999999999999999999999999999
Q ss_pred EEEE----ecC------CCChhHHHhhhccccCCC--CCccEEEEeCccchHHHHHHHHc
Q 007774 407 CIIQ----YDS------AGEATEYVHRVGRTARLG--ERGDSLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 407 ~VI~----~d~------p~s~~~yiqr~GRt~R~g--~~g~~i~~l~~~e~~~~~~l~~~ 454 (590)
+||. ||+ |-++.+|.||+|||||.| ..|.++++..+.|..+...+...
T Consensus 425 vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~ 484 (1724)
T 4f92_B 425 VIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQ 484 (1724)
T ss_dssp EEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTT
T ss_pred EEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcC
Confidence 9995 554 458999999999999987 47999999988887666555443
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=7.7e-40 Score=350.78 Aligned_cols=321 Identities=21% Similarity=0.227 Sum_probs=220.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.|+++|.++++.++.++++++.+|||||||++|+.++... +.++|||+||++|+.||.+.+.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 4899999999999999999999999999999999998764 356999999999999999999883
Q ss_pred CCcc-eEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 121 HWIV-PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 121 ~~~~-~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
... ++.+.|+... ..+|+|+||+.+...+... ..++++||+||||++.+.+|.. ++..++
T Consensus 157 -~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~- 217 (472)
T 2fwr_A 157 -GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI- 217 (472)
T ss_dssp -CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC-
T ss_pred -CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC-
Confidence 244 6666666542 4689999999998776531 1468999999999999887764 444443
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccch-------------------HHHHHHhhcCCCEEEecCCCCCCCCccccccc
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEK-------------------VNHLAKISLETPVLIGLDEKKLPEDKSHVRFG 260 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~~-------------------~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~ 260 (590)
..+++++|||+... ...+....+..+....+.... .. .....+.
T Consensus 218 ---------------~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~-~~~~~~~ 280 (472)
T 2fwr_A 218 ---------------APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPL-AE-DERVEYE 280 (472)
T ss_dssp ---------------CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECC-CH-HHHHHTT
T ss_pred ---------------CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCC-CH-HHHHHHH
Confidence 57889999999631 222211112211111110000 00 0000000
Q ss_pred CccccchhhccC----------CCcccc----ccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEe
Q 007774 261 SLESDVKEEVEH----------PSTTMR----STTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFF 326 (590)
Q Consensus 261 ~~~~~~~~~~~~----------~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~ 326 (590)
............ ...... ................+.+....|...|..++.. ..+.++||||
T Consensus 281 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~----~~~~k~lvF~ 356 (472)
T 2fwr_A 281 KREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER----HRKDKIIIFT 356 (472)
T ss_dssp TTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH----TSSSCBCCBC
T ss_pred HHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh----CCCCcEEEEE
Confidence 000000000000 000000 0000000000000111123455677888888776 3478999999
Q ss_pred cchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCc
Q 007774 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (590)
Q Consensus 327 ~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~ 406 (590)
++.+.++.++..|. +..+||+++..+|.+++++|++|+.+|||||+++++|+|+|+++
T Consensus 357 ~~~~~~~~l~~~l~----------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~ 414 (472)
T 2fwr_A 357 RHNELVYRISKVFL----------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDAN 414 (472)
T ss_dssp SCHHHHHHHHHHTT----------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBS
T ss_pred CCHHHHHHHHHHhC----------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCc
Confidence 99999999988773 23589999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhHHHhhhccccCCCCC-ccEEEE
Q 007774 407 CIIQYDSAGEATEYVHRVGRTARLGER-GDSLLF 439 (590)
Q Consensus 407 ~VI~~d~p~s~~~yiqr~GRt~R~g~~-g~~i~~ 439 (590)
+||++|+|+++..|+||+||+||.|+. +.++++
T Consensus 415 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 415 VGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp EEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred EEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 999999999999999999999999965 566654
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.6e-40 Score=356.45 Aligned_cols=280 Identities=21% Similarity=0.229 Sum_probs=210.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 121 (590)
++++|+.+++.+..++++++.||||||||++|.+|+++. +.++||++|||+||.|+++.+.+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~g--- 282 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAHG--- 282 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHHS---
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHhC---
Confidence 556666666667788999999999999999999998862 45799999999999999997766543
Q ss_pred CcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCC
Q 007774 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 201 (590)
Q Consensus 122 ~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~ 201 (590)
..++..+|+.. ...+.+|+|+|||+|+. ...+.+.++++||||||| +++++|...+..++..++...
T Consensus 283 -~~vg~~vG~~~-------~~~~~~IlV~TPGrLl~----~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 283 -IDPNIRTGVRT-------ITTGAPVTYSTYGKFLA----DGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp -CCCEEECSSCE-------ECCCCSEEEEEHHHHHH----TTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTT
T ss_pred -CCeeEEECcEe-------ccCCCCEEEECcHHHHh----CCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcC
Confidence 34566777754 35678999999999842 345667889999999995 678889999999999997521
Q ss_pred CCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccc
Q 007774 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTT 281 (590)
Q Consensus 202 ~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (590)
...++++|||++..+. ...|....+....
T Consensus 350 -------------~~llil~SAT~~~~i~------~~~p~i~~v~~~~-------------------------------- 378 (666)
T 3o8b_A 350 -------------ARLVVLATATPPGSVT------VPHPNIEEVALSN-------------------------------- 378 (666)
T ss_dssp -------------CSEEEEEESSCTTCCC------CCCTTEEEEECBS--------------------------------
T ss_pred -------------CceEEEECCCCCcccc------cCCcceEEEeecc--------------------------------
Confidence 2347888999986311 1111111100000
Q ss_pred cccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCc
Q 007774 282 EDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC 361 (590)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (590)
...+ ..+ ..... +. ...++++||||+|++.++.+++.|+.. ++
T Consensus 379 -----~~~i-~~~-----~~~~~-----l~----~~~~~~vLVFv~Tr~~ae~la~~L~~~-----------------g~ 421 (666)
T 3o8b_A 379 -----TGEI-PFY-----GKAIP-----IE----AIRGGRHLIFCHSKKKCDELAAKLSGL-----------------GI 421 (666)
T ss_dssp -----CSSE-EET-----TEEEC-----GG----GSSSSEEEEECSCHHHHHHHHHHHHTT-----------------TC
T ss_pred -----cchh-HHH-----Hhhhh-----hh----hccCCcEEEEeCCHHHHHHHHHHHHhC-----------------CC
Confidence 0000 000 00000 01 124689999999999999999999876 77
Q ss_pred ceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEE----------Eec-----------CCCChhHH
Q 007774 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII----------QYD-----------SAGEATEY 420 (590)
Q Consensus 362 ~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI----------~~d-----------~p~s~~~y 420 (590)
.+..+||+|++.+ |.++..+||||||+++||||+| |++|| ||| .|.+.++|
T Consensus 422 ~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~sy 493 (666)
T 3o8b_A 422 NAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSR 493 (666)
T ss_dssp CEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHH
T ss_pred cEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHH
Confidence 8999999999875 4567779999999999999997 99999 677 89999999
Q ss_pred HhhhccccCCCCCccEEEEeCccchHH
Q 007774 421 VHRVGRTARLGERGDSLLFLQPVEMDY 447 (590)
Q Consensus 421 iqr~GRt~R~g~~g~~i~~l~~~e~~~ 447 (590)
+||+||||| |+.|. +.|+.+.|...
T Consensus 494 iQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 494 SQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp HHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred HHHhccCCC-CCCCE-EEEEecchhhc
Confidence 999999999 99999 99998876543
No 50
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=312.47 Aligned_cols=212 Identities=25% Similarity=0.429 Sum_probs=186.3
Q ss_pred cccccccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCC
Q 007774 11 VKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRI 88 (590)
Q Consensus 11 ~~~~~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~ 88 (590)
..++.+..+|++++|++.+++.|. .+||..||++|.++||.++.| +|++++||||||||++|++|+++.+...
T Consensus 85 ~~p~~~~~~f~~l~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---- 159 (300)
T 3fmo_B 85 NSPLYSVKSFEELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---- 159 (300)
T ss_dssp TCCCCCCCCSGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT----
T ss_pred CCCcCCcCCHhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc----
Confidence 445567789999999999999995 689999999999999999987 9999999999999999999999987542
Q ss_pred CCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCC
Q 007774 89 DRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 89 ~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
..++++|||+|||+||.|+++.+..+...+....+.+.+||...... ...+++|+|||||+|++++.....+.+.
T Consensus 160 --~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 160 --NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred --CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34668999999999999999999999886666778888888764322 2456899999999999999876677788
Q ss_pred ceeEEEEechhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCC
Q 007774 169 NLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (590)
Q Consensus 169 ~l~~lVlDEah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~ 247 (590)
++++|||||||++++ .+|...+..|+..++. .+|+++||||+++.+..++..++.+|..+.+..
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~---------------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT---------------TCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCCC---------------CCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 999999999999998 7999999999988875 789999999999999999999999999987753
No 51
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=7.3e-37 Score=297.64 Aligned_cols=213 Identities=34% Similarity=0.548 Sum_probs=189.7
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|++++|++.+.+.+. ++||..||++|.+++|.++.|+|+++.||||||||++|++|++..+..... ..+..+.++
T Consensus 28 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~~ 105 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIA-RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGDGPIC 105 (242)
T ss_dssp CSSTTTTTCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTCCCSE
T ss_pred cCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCCCCEE
Confidence 458999999999999995 689999999999999999999999999999999999999999998865321 223457889
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
||++||++|+.|+++.+..+.... ...+..++||.........+..+++|+|+|||+|.+++.. ....+.++++||+|
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViD 183 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLD 183 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEET
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEe
Confidence 999999999999999999998754 4677888999988888888888999999999999999976 44567899999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCC
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~ 248 (590)
|||++++++|...+..++..++. .+|+++||||+++.++.++...+.+|..+.++..
T Consensus 184 Eah~l~~~~~~~~~~~i~~~~~~---------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 184 EADRMLDMGFEPQIRKIVDQIRP---------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp THHHHHHTTCHHHHHHHHTTSCS---------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred CHHHHhhhCcHHHHHHHHHhCCc---------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999988865 7899999999999999999999999999988654
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.6e-37 Score=324.50 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=195.1
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|+++++++|||||||++|++|+++.+.. .+.+++|++||++||.|+++.+. ...+.+..|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc
Confidence 37899999999999999999999976654 35689999999999999998775 2234444443211
Q ss_pred HHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCcccc
Q 007774 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (590)
Q Consensus 135 ~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~ 214 (590)
....+..+.+.|.|.+...+.. ...+.++++||+||||++ +.++......+...... .
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~--------------~ 123 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM--------------G 123 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT--------------T
T ss_pred -----cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC--------------C
Confidence 1112345777888888766655 334678999999999996 44444444444444321 2
Q ss_pred CceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCCcccceeEE
Q 007774 215 KRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRY 294 (590)
Q Consensus 215 ~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (590)
.+|+++||||++..+..+... ..|.. .+..
T Consensus 124 ~~~~l~~SAT~~~~~~~~~~~--~~~i~-~~~~----------------------------------------------- 153 (431)
T 2v6i_A 124 DAGAIFMTATPPGTTEAFPPS--NSPII-DEET----------------------------------------------- 153 (431)
T ss_dssp SCEEEEEESSCTTCCCSSCCC--SSCCE-EEEC-----------------------------------------------
T ss_pred CCcEEEEeCCCCcchhhhcCC--CCcee-eccc-----------------------------------------------
Confidence 699999999998632221100 00000 0000
Q ss_pred EEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHH
Q 007774 295 VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (590)
Q Consensus 295 ~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~ 374 (590)
.++ ..+...+...+.. .++++||||++++.++.+++.|+.. +..+..+||+ +
T Consensus 154 -~~~-~~~~~~~~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~v~~lhg~----~ 205 (431)
T 2v6i_A 154 -RIP-DKAWNSGYEWITE-----FDGRTVWFVHSIKQGAEIGTCLQKA-----------------GKKVLYLNRK----T 205 (431)
T ss_dssp -CCC-SSCCSSCCHHHHS-----CSSCEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEESTT----T
T ss_pred -cCC-HHHHHHHHHHHHc-----CCCCEEEEeCCHHHHHHHHHHHHHc-----------------CCeEEEeCCc----c
Confidence 000 0011112233333 2568999999999999999999876 6789999997 5
Q ss_pred HHHHHHHhhccCccEEEeccccccCCCCCCCcE-----------------EEEecCCCChhHHHhhhccccCCCC-CccE
Q 007774 375 RRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC-----------------IIQYDSAGEATEYVHRVGRTARLGE-RGDS 436 (590)
Q Consensus 375 R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~-----------------VI~~d~p~s~~~yiqr~GRt~R~g~-~g~~ 436 (590)
|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||.|. .|.+
T Consensus 206 r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~ 284 (431)
T 2v6i_A 206 FESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDI 284 (431)
T ss_dssp HHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCE
T ss_pred HHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeE
Confidence 88899999999999999999999999999 554 6889999999999999999999985 5666
Q ss_pred EEEeCc---cchHHHHHHH
Q 007774 437 LLFLQP---VEMDYLQDLE 452 (590)
Q Consensus 437 i~~l~~---~e~~~~~~l~ 452 (590)
++|..+ .+..++..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~ 303 (431)
T 2v6i_A 285 YAYSGNVSSDNEGHVSWTE 303 (431)
T ss_dssp EEECSCCCCCCTTBHHHHH
T ss_pred EEEcCCCCCccchhHHHHH
Confidence 666533 3344444443
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.3e-37 Score=340.46 Aligned_cols=347 Identities=17% Similarity=0.173 Sum_probs=193.0
Q ss_pred CCcHHHHHHHHHHhc----C-CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH-HHHH
Q 007774 41 APTKVQAQAIPVILS----G-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY-EILH 114 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~----g-~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~-~~~~ 114 (590)
.|+++|.++++.++. | ++++++++||||||++++..+...+...-.......+.++|||+||++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 599999999999875 4 669999999999999976655544433211111125678999999999999999 7776
Q ss_pred HHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhcc---CCCCCCceeEEEEechhhhhhcCchHHHH
Q 007774 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT---SSFLHTNLRWIIFDEADRILELGFGKEIE 191 (590)
Q Consensus 115 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~---~~~~~~~l~~lVlDEah~ll~~gf~~~l~ 191 (590)
.+.. ....+.++ ....+.+|+|+||++|..++... ..+....+++||+||||++...+ ...+.
T Consensus 258 ~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 258 PFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred hcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 5422 22223222 23356899999999998876422 22445678999999999987643 35667
Q ss_pred HHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCC-CcccccccCccccchhhc
Q 007774 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE-DKSHVRFGSLESDVKEEV 270 (590)
Q Consensus 192 ~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 270 (590)
.++..++ ..++++||||+......-....+..+.........+.. ............... .
T Consensus 324 ~il~~~~----------------~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~--~ 385 (590)
T 3h1t_A 324 EILEYFE----------------PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVD--A 385 (590)
T ss_dssp HHHHHST----------------TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTC--C
T ss_pred HHHHhCC----------------cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeee--c
Confidence 7777775 47899999998754332222223322221100000000 000000000000000 0
Q ss_pred cCCCccccccccccCCcccceeEEEEe-------cCCChHHHHHHHHHhhhcc-cCCceEEEEecchhhHHHHHHhhhhc
Q 007774 271 EHPSTTMRSTTEDFKLPAQLVQRYVKV-------PCGSRLAVLLSILKHLFDT-EVSQKLVVFFSTCDAVDFHYSLLSEF 342 (590)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~k~~~L~~~l~~~~~~-~~~~k~iVF~~t~~~~~~~~~~l~~~ 342 (590)
...... ...... ....+....... ....+...+...+...+.. ....++||||++++.++.++..|...
T Consensus 386 ~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~ 462 (590)
T 3h1t_A 386 AGWRPS-KGDVDR--FGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNL 462 (590)
T ss_dssp --------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHH
T ss_pred cccccc-cccccc--cccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHh
Confidence 000000 000000 000000000000 0012233333333332221 34579999999999999999999875
Q ss_pred cCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCcc---EEEeccccccCCCCCCCcEEEEecCCCChhH
Q 007774 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVKCIIQYDSAGEATE 419 (590)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~---vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~ 419 (590)
.... . ...+..+..+||++++ +|.+++++|++|+.. ||+||+++++|+|+|+|++||++++|+++..
T Consensus 463 ~~~~--------~-~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~ 532 (590)
T 3h1t_A 463 NSDL--------S-RKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSE 532 (590)
T ss_dssp THHH--------H-TTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHH
T ss_pred hhhh--------h-ccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHH
Confidence 2100 0 0002237789999864 799999999998766 8899999999999999999999999999999
Q ss_pred HHhhhccccCCCC
Q 007774 420 YVHRVGRTARLGE 432 (590)
Q Consensus 420 yiqr~GRt~R~g~ 432 (590)
|+||+||++|.|.
T Consensus 533 ~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 533 FKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHTTSCCCBG
T ss_pred HHHHHhhhcccCc
Confidence 9999999999885
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=293.53 Aligned_cols=207 Identities=39% Similarity=0.673 Sum_probs=186.1
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|++++|++.+.+.| +.+||..|+++|.++++.++.|+|+++.||||||||++|++|+++.+... ..+.++
T Consensus 42 ~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~ 114 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFA 114 (249)
T ss_dssp HCCTGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCE
T ss_pred cCCHHHcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceE
Confidence 46899999999999999 56899999999999999999999999999999999999999999988753 235679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
||++||++|+.|+++.++.+.... ...+..++||.....+...+..+++|+|+|||+|.+++.....+.+.++++||+|
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 999999999999999999987744 3567788898887777777788999999999999999987666778899999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecC
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 246 (590)
|||++++++|...+..++..++. .+|+++||||++..++.++...+.+|..+.+.
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPR---------------DRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCS---------------SSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCC---------------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999988865 68999999999999999999999999988754
No 55
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=291.35 Aligned_cols=210 Identities=35% Similarity=0.538 Sum_probs=176.0
Q ss_pred cCCccC-CCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 007774 17 SCSFSS-LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (590)
Q Consensus 17 ~~~f~~-l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~ 95 (590)
..+|++ +++++.+++.|. ++||..||++|.++++.++.|+|+++.||||||||++|++|++..+...........+.+
T Consensus 18 ~~~f~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 96 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSII-RVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPG 96 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCS
T ss_pred hhhHhhhhccCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCc
Confidence 357888 799999999995 579999999999999999999999999999999999999999998865432222346788
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
+||++||++|+.|+++.+..+.. .......++||.........+..+++|+|+|||++.+++.. ..+.+.++++||+
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lVi 173 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVI 173 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEE
Confidence 99999999999999999999752 34667788888887777778888999999999999998876 4556789999999
Q ss_pred echhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEec
Q 007774 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (590)
Q Consensus 176 DEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 245 (590)
||||++++++|...+..++..++. .+|+++||||+++.++.++...+.+|..+.+
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRP---------------DRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCS---------------SCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred ECHHHHhccchHHHHHHHHHhCCc---------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999875 7899999999999999999999999988753
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.2e-36 Score=282.55 Aligned_cols=204 Identities=35% Similarity=0.523 Sum_probs=182.9
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
+.+|++++|++.+++.|. .+||..|+++|.++++.++.|+|+++.+|||||||++|++|+++.+... ..+.++
T Consensus 2 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~~~ 74 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQA 74 (206)
T ss_dssp CSSGGGSCCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT------SCSCCE
T ss_pred CCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc------CCCeeE
Confidence 468999999999999995 6899999999999999999999999999999999999999999987431 345789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
||++||++|+.|+++.+..+....+...+..+.||.........+..+++|+|+||+++.+.+.. ....+.+++++|+|
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViD 153 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLD 153 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEE
Confidence 99999999999999999999876656778888899888777777788899999999999998876 44567899999999
Q ss_pred chhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEE
Q 007774 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243 (590)
Q Consensus 177 Eah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i 243 (590)
|||++.+.+|...+..++..++. ..|++++|||++..+..+....+.+|..+
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLPK---------------NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCT---------------TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ChHHhHhhCcHHHHHHHHHhCCc---------------cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999875 68999999999999999999999999875
No 57
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.1e-36 Score=328.10 Aligned_cols=288 Identities=16% Similarity=0.165 Sum_probs=207.9
Q ss_pred HHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEE
Q 007774 49 AIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128 (590)
Q Consensus 49 ~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~ 128 (590)
.....+.|++++++||||||||+ ++++.+... ..++|++|||+||.|+++.+... ...++.+
T Consensus 148 p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~---------~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~ll 209 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---------KSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLV 209 (677)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS---------SSEEEEESSHHHHHHHHHHHHHT-----TCCEEEE
T ss_pred HHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------CCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEE
Confidence 33456789999999999999998 444444431 23599999999999999998875 3456777
Q ss_pred EcCCchHHHHHHhcCCCcEEEECChHHHHHHhccC--CCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccCCCCCCC
Q 007774 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTS--SFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIG 206 (590)
Q Consensus 129 ~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~--~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~ 206 (590)
+|+... +++|||++.+++..+. ......++++|+||||++++.+|+..+..++..++..
T Consensus 210 tG~~~~-------------iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~------ 270 (677)
T 3rc3_A 210 TGEERV-------------TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAE------ 270 (677)
T ss_dssp CSSCEE-------------CCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEE------
T ss_pred ECCeeE-------------EecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCcc------
Confidence 777543 4455555544443321 1123678999999999999999999999999988732
Q ss_pred CCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccCccccchhhccCCCccccccccccCC
Q 007774 207 EGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKL 286 (590)
Q Consensus 207 ~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (590)
..+++++|||.+ .+..+..... .+..+...... .
T Consensus 271 --------~i~il~~SAT~~-~i~~l~~~~~-~~~~v~~~~r~------------------------------------~ 304 (677)
T 3rc3_A 271 --------EVHLCGEPAAID-LVMELMYTTG-EEVEVRDYKRL------------------------------------T 304 (677)
T ss_dssp --------EEEEEECGGGHH-HHHHHHHHHT-CCEEEEECCCS------------------------------------S
T ss_pred --------ceEEEeccchHH-HHHHHHHhcC-CceEEEEeeec------------------------------------c
Confidence 789999999953 3444444332 22222111000 0
Q ss_pred cccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEec
Q 007774 287 PAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (590)
Q Consensus 287 ~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l 366 (590)
+..... ..+ ..+.. .....||||+|++.++.++..|... +..+..+
T Consensus 305 ~l~~~~--------~~l----~~l~~-----~~~g~iIf~~s~~~ie~la~~L~~~-----------------g~~v~~l 350 (677)
T 3rc3_A 305 PISVLD--------HAL----ESLDN-----LRPGDCIVCFSKNDIYSVSRQIEIR-----------------GLESAVI 350 (677)
T ss_dssp CEEECS--------SCC----CSGGG-----CCTTEEEECSSHHHHHHHHHHHHHT-----------------TCCCEEE
T ss_pred hHHHHH--------HHH----HHHHh-----cCCCCEEEEcCHHHHHHHHHHHHhc-----------------CCCeeee
Confidence 000000 000 00111 1234588899999999999999876 6789999
Q ss_pred cCCCChHHHHHHHHHhhc--cCccEEEeccccccCCCCCCCcEEEEecC--------------CCChhHHHhhhccccCC
Q 007774 367 HGNMKQEDRRTTFGAFKT--EKKALLLSTDVAARGLDFPKVKCIIQYDS--------------AGEATEYVHRVGRTARL 430 (590)
Q Consensus 367 hg~~~~~~R~~~~~~F~~--~~~~vLiaTdv~~rGlDip~v~~VI~~d~--------------p~s~~~yiqr~GRt~R~ 430 (590)
||+|++.+|.++++.|++ |..+|||||+++++|||+ +|++||++|. |.+..+|+||+|||||.
T Consensus 351 HG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~ 429 (677)
T 3rc3_A 351 YGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRF 429 (677)
T ss_dssp CTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCT
T ss_pred eccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCC
Confidence 999999999999999999 889999999999999999 9999999999 78999999999999999
Q ss_pred CCCcc--EEEEeCccchHHHHHHHHc
Q 007774 431 GERGD--SLLFLQPVEMDYLQDLEKH 454 (590)
Q Consensus 431 g~~g~--~i~~l~~~e~~~~~~l~~~ 454 (590)
|..|. .++++.+.+..++..+...
T Consensus 430 g~~g~~G~v~~l~~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 430 SSRFKEGEVTTMNHEDLSLLKEILKR 455 (677)
T ss_dssp TSSCSSEEEEESSTTHHHHHHHHHHS
T ss_pred CCCCCCEEEEEEecchHHHHHHHHhc
Confidence 97532 3444556666666666654
No 58
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=293.59 Aligned_cols=207 Identities=42% Similarity=0.711 Sum_probs=180.3
Q ss_pred cccCCccCCC--CCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCC
Q 007774 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (590)
Q Consensus 15 ~~~~~f~~l~--l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~ 92 (590)
|...+|++++ +++.+++.|. .+||..|+++|.++++.++.|+|++++||||||||++|++|+++.+..... ....
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~ 125 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIK-EMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF--MPRN 125 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC--CGGG
T ss_pred cccCChhHhccccCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc--cccC
Confidence 5566788887 9999999995 589999999999999999999999999999999999999999998875321 1134
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeE
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~ 172 (590)
+.++||++||++||.|+++.++.++... ...++.++||.........+..+++|+|+|||++.+++.....+.+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 6789999999999999999999987743 466788899988888888888889999999999999998876677889999
Q ss_pred EEEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCC
Q 007774 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240 (590)
Q Consensus 173 lVlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p 240 (590)
||+||||+++++||...+..++..++. .+|+++||||+++.++.+++..+.++
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~---------------~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPT---------------RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCS---------------SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCC---------------CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999999999975 78999999999999999999888754
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=7.2e-36 Score=286.12 Aligned_cols=209 Identities=29% Similarity=0.499 Sum_probs=181.3
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|++++|++.+.+.+. .+||..|+++|.++++.++.|+|+++.+|||||||++|++|+++.+... ..+.++
T Consensus 3 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------~~~~~~ 75 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIK-TLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE------RAEVQA 75 (219)
T ss_dssp -CCGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT------SCSCCE
T ss_pred CCCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC------cCCceE
Confidence 357999999999999994 6899999999999999999999999999999999999999999987541 246789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcC---CcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEE
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFH---WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~---~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~l 173 (590)
||++||++|+.|+++.+.++..... ...+..+.||.........+..+++|+|+||+++.+++.. ..+.+.+++++
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~l 154 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHIL 154 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEE
Confidence 9999999999999999999887442 3567778888776655555666899999999999998876 44567889999
Q ss_pred EEechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCC
Q 007774 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (590)
Q Consensus 174 VlDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~ 248 (590)
|+||||++.+++|...+..++..++. ..|++++|||+++.+..+.+..+.+|..+.+...
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPK---------------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCT---------------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCc---------------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 99999999999999999999998874 6899999999999999999999999998877544
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.7e-35 Score=285.61 Aligned_cols=206 Identities=32% Similarity=0.471 Sum_probs=180.3
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|++++|++.+.+.|. .+||..|+++|.++++.++.|+|+++.+|||||||++|++|+++.+... ..+.++
T Consensus 23 ~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------~~~~~~ 95 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLR-AAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------NLSTQI 95 (230)
T ss_dssp -CCGGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------SCSCCE
T ss_pred CCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCceE
Confidence 458999999999999995 6899999999999999999999999999999999999999999987542 346789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEe
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlD 176 (590)
||++||++|+.|+++.+..+........+..+.||.....+...+ .+++|+|+||+++.+++.. ..+.+.+++++|+|
T Consensus 96 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViD 173 (230)
T 2oxc_A 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILD 173 (230)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEeC
Confidence 999999999999999999987655567778888888776655554 4789999999999998875 44567889999999
Q ss_pred chhhhhhcC-chHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecC
Q 007774 177 EADRILELG-FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (590)
Q Consensus 177 Eah~ll~~g-f~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 246 (590)
|||+++++| |...+..++..++. .+|++++|||+++.+..+....+.+|..+.+.
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~---------------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPA---------------SKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCS---------------SCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred CchHhhcCcchHHHHHHHHHhCCC---------------CCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 999999998 99999999999875 68999999999999999999999999887653
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=285.89 Aligned_cols=212 Identities=37% Similarity=0.615 Sum_probs=183.3
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCee
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~ 95 (590)
...+|+++++++.+.+.|. .+||..|+++|.++++.++.|+|+++.+|||||||++|++|+++.+..... ....+.+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~ 99 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQ-EAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGLG 99 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCCC
T ss_pred ccCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCce
Confidence 3457999999999999995 679999999999999999999999999999999999999999998865321 1234678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 96 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
+||++||++|+.|+++.++.+.... ...++.++||.....+...+ .+++|+|+||+++.+++.....+.+.++++||+
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 9999999999999999999987633 35677788888776665555 578999999999999988765677789999999
Q ss_pred echhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCC
Q 007774 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (590)
Q Consensus 176 DEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~ 247 (590)
||||++++++|...+..++..++. .+|+++||||+++.+..+++..+.+|..+.+..
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCT---------------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCC---------------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999998875 689999999999999999999999999987754
No 62
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.8e-35 Score=286.81 Aligned_cols=206 Identities=32% Similarity=0.466 Sum_probs=170.9
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|++++|++.+.+.|. .+||..||++|.++++.++.|+|+++.+|||||||++|++|+++.+... ..+.++
T Consensus 29 ~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~------~~~~~~ 101 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIY-AYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE------FKETQA 101 (237)
T ss_dssp CCSGGGSCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT------SCSCCE
T ss_pred cCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCceE
Confidence 357999999999999995 5799999999999999999999999999999999999999999987531 245789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCC-CcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
||++||++|+.|+++.+..+.... ...+..+.||.....+...+..+ ++|+|+||++|.+++.. ..+.+..+++||+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lVi 179 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVL 179 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEE
T ss_pred EEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEE
Confidence 999999999999999999987643 35566778887776666666655 89999999999999876 4456788999999
Q ss_pred echhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecC
Q 007774 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (590)
Q Consensus 176 DEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 246 (590)
||||++++.+|...+..++..++. ..|++++|||+++.+..++...+.+|..+.++
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNT---------------SIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCchHhhccCcHHHHHHHHHhCCC---------------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999998874 78999999999999999999999999988764
No 63
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.4e-35 Score=276.92 Aligned_cols=205 Identities=38% Similarity=0.556 Sum_probs=181.5
Q ss_pred CccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEE
Q 007774 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (590)
Q Consensus 19 ~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~li 98 (590)
+|++++|++.+.+.+. .+||..|+++|.++++.++.|+++++.+|||||||++|++|+++.+..... +..+.++||
T Consensus 2 ~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~---~~~~~~~li 77 (207)
T 2gxq_A 2 EFKDFPLKPEILEALH-GRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE---RGRKPRALV 77 (207)
T ss_dssp CGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC---TTCCCSEEE
T ss_pred ChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCcEEE
Confidence 6999999999999995 689999999999999999999999999999999999999999998764221 235678999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEech
Q 007774 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEA 178 (590)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEa 178 (590)
++||++|+.|+++.+..+.. ...+..+.||.........+..+++|+|+||+++.+++.. ..+.+.+++++|+|||
T Consensus 78 l~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEA 153 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESH
T ss_pred EECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEECh
Confidence 99999999999999998854 3567788888887777777777899999999999999876 4566789999999999
Q ss_pred hhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecC
Q 007774 179 DRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (590)
Q Consensus 179 h~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 246 (590)
|++.+.+|...+..++..++. .+|++++|||+++.++.+++..+.+|..+.+.
T Consensus 154 h~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 154 DEMLSMGFEEEVEALLSATPP---------------SRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHHHHTTCHHHHHHHHHTSCT---------------TSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hHhhccchHHHHHHHHHhCCc---------------cCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999999999988764 68999999999999999999999999988653
No 64
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.8e-35 Score=286.90 Aligned_cols=217 Identities=32% Similarity=0.523 Sum_probs=184.7
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCC---CCCCCCe
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR---IDRSSGT 94 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~---~~~~~~~ 94 (590)
.+|++++|++.+.+.| ..+||..||++|.++++.++.|+|+++.||||||||++|++|+++.+...... .....+.
T Consensus 23 ~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 23 ENFDELKLDPTIRNNI-LLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CSSGGGSCCCSTTTTT-TTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred CCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 4799999999999999 56899999999999999999999999999999999999999999988653311 1123457
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEE
Q 007774 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (590)
Q Consensus 95 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lV 174 (590)
++|||+||++|+.|+++.+..+.... ...+..+.||.....+...+..+++|+|+||++|.+++.. ..+.+.++++||
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lV 179 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIV 179 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEEE
Confidence 89999999999999999999987643 4567788899888888888888999999999999999876 345678999999
Q ss_pred EechhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCC
Q 007774 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (590)
Q Consensus 175 lDEah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~ 248 (590)
+||||++++++|...+..++..+... ....+|+++||||+++.++.++...+.+|..+.+...
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~-----------~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMP-----------SGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCC-----------CGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCC-----------CCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 99999999999999999999864321 0125799999999999999999999999999887654
No 65
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=8.7e-35 Score=333.85 Aligned_cols=373 Identities=17% Similarity=0.167 Sum_probs=233.2
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 41 APTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~--g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
.|+|+|.+++..++. +.++++.++||+|||++++..+.+.+.. +...++|||||+ .|+.||.+.+.+.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 599999999998886 4589999999999999998888777654 234569999999 99999999997764
Q ss_pred hcCCcceEEEEcCCchHHHHHH---hcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCch-HHHHHHH
Q 007774 119 RFHWIVPGYVMGGENRSKEKAR---LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG-KEIEEIL 194 (590)
Q Consensus 119 ~~~~~~~~~~~gg~~~~~~~~~---l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~-~~l~~il 194 (590)
+ ..+..+ +|......... .....+|+|+|++.+.........+...++++||+||||++.+.+.. ......+
T Consensus 224 --~-l~v~v~-~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 224 --N-LRFALF-DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp --C-CCCEEC-CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred --C-CCEEEE-ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 2 233333 33222221111 11246899999998864322212233457899999999998765432 1223344
Q ss_pred HHhccCCCCCCCCCCCccccCceEEEEeecccc-hHHHHHH-hhcCCCEEEecC----------------------C---
Q 007774 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAK-ISLETPVLIGLD----------------------E--- 247 (590)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~-~~~~l~~-~~l~~p~~i~~~----------------------~--- 247 (590)
..+... .++++++|||+-. ....+.. ..+..|..+... .
T Consensus 300 ~~L~~~--------------~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~ 365 (968)
T 3dmq_A 300 EQLAEH--------------VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKL 365 (968)
T ss_dssp HHHHTT--------------CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCC
T ss_pred HHHhhc--------------CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence 444321 4678999999842 2111111 111111100000 0
Q ss_pred -----CCCCCCcccccccCccccch----h-----------hccC---CCccccccc-cccCCccc-ceeEE--------
Q 007774 248 -----KKLPEDKSHVRFGSLESDVK----E-----------EVEH---PSTTMRSTT-EDFKLPAQ-LVQRY-------- 294 (590)
Q Consensus 248 -----~~~~~~~~~~~~~~~~~~~~----~-----------~~~~---~~~~~~~~~-~~~~~~~~-l~~~~-------- 294 (590)
..+........+...-.... . .... ......... .....|.. .....
T Consensus 366 ~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~ 445 (968)
T 3dmq_A 366 SNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQ 445 (968)
T ss_dssp CGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHH
T ss_pred CHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHH
Confidence 00000000000000000000 0 0000 000000000 00000000 00000
Q ss_pred -------------------------------------EEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHH
Q 007774 295 -------------------------------------VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (590)
Q Consensus 295 -------------------------------------~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~ 337 (590)
..+....|...|..++.. ..+.++||||+++..++.++.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~----~~~~k~iVF~~~~~~~~~l~~ 521 (968)
T 3dmq_A 446 TAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS----HRSQKVLVICAKAATALQLEQ 521 (968)
T ss_dssp HHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH----TSSSCCCEECSSTHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh----CCCCCEEEEeCcHHHHHHHHH
Confidence 122345678888888876 357899999999999999999
Q ss_pred hhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccC--ccEEEeccccccCCCCCCCcEEEEecCCC
Q 007774 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK--KALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (590)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~--~~vLiaTdv~~rGlDip~v~~VI~~d~p~ 415 (590)
.|.... ++.+..+||+|++.+|..++++|++|+ ..|||||+++++|+|+|++++||+||+|+
T Consensus 522 ~L~~~~----------------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~ 585 (968)
T 3dmq_A 522 VLRERE----------------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPF 585 (968)
T ss_dssp HHHTTT----------------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCS
T ss_pred HHHHHc----------------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCC
Confidence 998421 778999999999999999999999998 99999999999999999999999999999
Q ss_pred ChhHHHhhhccccCCCCCccEEEEeCccc---hHHHHHHHHcCCCCcc
Q 007774 416 EATEYVHRVGRTARLGERGDSLLFLQPVE---MDYLQDLEKHGVSLTE 460 (590)
Q Consensus 416 s~~~yiqr~GRt~R~g~~g~~i~~l~~~e---~~~~~~l~~~~~~~~~ 460 (590)
++..|+||+||+||.|+.|.++++....+ ...+......++.+.+
T Consensus 586 ~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~ 633 (968)
T 3dmq_A 586 NPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFE 633 (968)
T ss_dssp SHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCcee
Confidence 99999999999999999998777754433 3334444433455433
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-34 Score=277.53 Aligned_cols=205 Identities=28% Similarity=0.477 Sum_probs=178.6
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeE
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~ 96 (590)
..+|++++|++.+.+.|. .+||..|+++|.++++.++.|+|+++.+|||||||++|++|+++.+... ..+.++
T Consensus 13 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 85 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSV 85 (220)
T ss_dssp -CCSTTSCCCHHHHHHHH-HTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------TTCCCE
T ss_pred CCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc------CCCEEE
Confidence 357999999999999995 5899999999999999999999999999999999999999999987431 234689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcC-CCcEEEECChHHHHHHhccCCCCCCceeEEEE
Q 007774 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 97 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVl 175 (590)
||++||++|+.|+++.++.+........+..+.||.........+.. .++|+|+||+++.+++.. ..+.+.+++++|+
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lVi 164 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFIL 164 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEE
Confidence 99999999999999999999775556778888888887766665554 579999999999998876 4556789999999
Q ss_pred echhhhhh-cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEe
Q 007774 176 DEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (590)
Q Consensus 176 DEah~ll~-~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~ 244 (590)
||||++++ .+|...+..++..++. ..|++++|||+++.++.+++..+.+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCS---------------SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCC---------------cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999987 5888899988887764 689999999999999999999999998775
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.6e-34 Score=275.31 Aligned_cols=206 Identities=32% Similarity=0.511 Sum_probs=171.4
Q ss_pred CCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEE
Q 007774 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~l 97 (590)
.+|++++|++.+++.+. .+||..|+++|.++++.++.|+|+++.+|||||||++|++|+++.+... ..+.++|
T Consensus 14 ~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------~~~~~~l 86 (224)
T 1qde_A 14 YKFDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAPQAL 86 (224)
T ss_dssp CCGGGGTCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------CCSCCEE
T ss_pred CChhhcCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc------CCCceEE
Confidence 57999999999999995 5799999999999999999999999999999999999999999987542 3467899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
|++||++|+.|+++.+..+.... ...+..+.||.........+.. ++|+|+||+++.+++.. ..+.+.+++++|+||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDE 163 (224)
T 1qde_A 87 MLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDE 163 (224)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT-CSEEEECHHHHHHHHHT-TSSCCTTCCEEEEET
T ss_pred EEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHh-CCcchhhCcEEEEcC
Confidence 99999999999999999987643 4566777888766555554443 89999999999998876 455678899999999
Q ss_pred hhhhhhcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCC
Q 007774 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (590)
Q Consensus 178 ah~ll~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~ 248 (590)
||++.+++|...+..++..++. ..|++++|||+++.+..+....+.+|..+.+...
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPP---------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hhHHhhhhhHHHHHHHHHhCCc---------------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999998865 7899999999999999999999999999877654
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=6.1e-34 Score=307.20 Aligned_cols=343 Identities=16% Similarity=0.225 Sum_probs=216.0
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|+|+|.++++.+. .++++++.++||+|||++++..+...... ....++|||||+ .|+.||.+++.++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 59999999998874 57899999999999999986655554322 234579999995 6899999999988
Q ss_pred HhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHH
Q 007774 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~ 196 (590)
.. ...+..+.|+... ......+|+|+||+++..... +....+++||+||||++.+.+ ......+..
T Consensus 109 ~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~ 174 (500)
T 1z63_A 109 AP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKE 174 (500)
T ss_dssp CT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHT
T ss_pred CC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHh--HHHHHHHHh
Confidence 53 3344444444321 112357899999999965433 223478999999999987654 233444444
Q ss_pred hccCCCCCCCCCCCccccCceEEEEeecccc-hHHHHHHh-hcC----------------------------------CC
Q 007774 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKI-SLE----------------------------------TP 240 (590)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~-~~~~l~~~-~l~----------------------------------~p 240 (590)
++ ..+.+++|||+.. ...++... .+- .|
T Consensus 175 l~----------------~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~ 238 (500)
T 1z63_A 175 LK----------------SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISP 238 (500)
T ss_dssp SC----------------EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTT
T ss_pred hc----------------cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhh
Confidence 43 4677999999843 23332211 000 11
Q ss_pred EEEecCCC------CCCCCcccccccCccccchhh--------ccCCCcccccc------------ccccCCcccceeEE
Q 007774 241 VLIGLDEK------KLPEDKSHVRFGSLESDVKEE--------VEHPSTTMRST------------TEDFKLPAQLVQRY 294 (590)
Q Consensus 241 ~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------------~~~~~~~~~l~~~~ 294 (590)
..+..... .++.......+.......... ........... ......|..+....
T Consensus 239 ~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~ 318 (500)
T 1z63_A 239 FILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE 318 (500)
T ss_dssp TEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSC
T ss_pred HeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCcc
Confidence 11111000 000000000000000000000 00000000000 00000000000000
Q ss_pred EEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHH
Q 007774 295 VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (590)
Q Consensus 295 ~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~ 374 (590)
.......|+..+..++.... ..+.++||||++++.++.+...|.... +..+..+||++++.+
T Consensus 319 ~~~~~s~K~~~l~~~l~~~~--~~~~k~lvF~~~~~~~~~l~~~l~~~~----------------~~~~~~~~g~~~~~~ 380 (500)
T 1z63_A 319 QSVRRSGKMIRTMEIIEEAL--DEGDKIAIFTQFVDMGKIIRNIIEKEL----------------NTEVPFLYGELSKKE 380 (500)
T ss_dssp CCSTTCHHHHHHHHHHHHHH--TTTCCEEEECSCHHHHHHHHHHHHHHH----------------TCCCCEEETTSCHHH
T ss_pred chhhcchhHHHHHHHHHHHH--ccCCcEEEEEehHHHHHHHHHHHHHhh----------------CCCeEEEECCCCHHH
Confidence 01233567777888887765 356899999999999999999997631 567888999999999
Q ss_pred HHHHHHHhhcc-Ccc-EEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEE
Q 007774 375 RRTTFGAFKTE-KKA-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (590)
Q Consensus 375 R~~~~~~F~~~-~~~-vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~ 439 (590)
|.+++++|+++ ... +|+||+++++|+|+|.+++||+||+|+++..|+||+||++|.|+.+.+.++
T Consensus 381 R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 381 RDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp HHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 99999999998 454 799999999999999999999999999999999999999999998877543
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=280.05 Aligned_cols=210 Identities=31% Similarity=0.511 Sum_probs=172.4
Q ss_pred CCccCC----CCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007774 18 CSFSSL----GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (590)
Q Consensus 18 ~~f~~l----~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~ 93 (590)
.+|+++ ++++.+++.+. .+||..||++|.++++.++.|+|+++.||||||||++|++|+++.+... ...+
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~ 98 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNIL-DAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-----ANKG 98 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----CSSS
T ss_pred cCHHHhhhccCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----ccCC
Confidence 468876 89999999995 5799999999999999999999999999999999999999999988542 1356
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH-HHhcCCCcEEEECChHHHHHHhccC-CCCCCcee
Q 007774 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK-ARLRKGISILVATPGRLLDHLKHTS-SFLHTNLR 171 (590)
Q Consensus 94 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~IlV~Tp~rl~~~l~~~~-~~~~~~l~ 171 (590)
.++||++||++|+.|+++.+..+..... ..+..+.|+....... .....+++|+|+|||+|.+++.... .+.+.+++
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~ 177 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTG-FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVE 177 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCc
Confidence 7899999999999999999999876433 3444444443222111 2234568999999999999997753 45678999
Q ss_pred EEEEechhhhhh---cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCEEEecCCC
Q 007774 172 WIIFDEADRILE---LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (590)
Q Consensus 172 ~lVlDEah~ll~---~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~ 248 (590)
+||+||||++++ .+|...+..++..+... ..|+++||||+++.+..++...+.+|..+.++..
T Consensus 178 ~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 178 WLVVDESDKLFEDGKTGFRDQLASIFLACTSH--------------KVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEEESSHHHHHHHC--CHHHHHHHHHHHCCCT--------------TCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEEeChHHhcccccccHHHHHHHHHHhcCCC--------------CcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999998 57888888888776532 6899999999999999999999999999987654
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=7.9e-32 Score=286.42 Aligned_cols=337 Identities=16% Similarity=0.183 Sum_probs=236.6
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|+. |+++|.-+.-.+..|+ |....||+|||+++.+|++-..+. |..+.||+||++||.|-++++..
T Consensus 71 ~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 71 TLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp HTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhHHHHHHH
Confidence 47876 9999999988888886 999999999999999999755433 66799999999999999999999
Q ss_pred HHhhcCCcceEEEEcCC--------------------------------------------------chHHHHHHhcCCC
Q 007774 116 LLHRFHWIVPGYVMGGE--------------------------------------------------NRSKEKARLRKGI 145 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~--------------------------------------------------~~~~~~~~l~~~~ 145 (590)
+...++ +.+++++... +... ++..-.+
T Consensus 139 l~~~Lg-lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~ 215 (822)
T 3jux_A 139 VYLFLG-LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLC 215 (822)
T ss_dssp HHHHTT-CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHS
T ss_pred HHHHhC-CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcC
Confidence 988554 6777777621 1111 1111247
Q ss_pred cEEEECChHH-HHHHhccCC-----CCCCceeEEEEechhhhh-hcC---------------chHHHHHHHHHh------
Q 007774 146 SILVATPGRL-LDHLKHTSS-----FLHTNLRWIIFDEADRIL-ELG---------------FGKEIEEILDIL------ 197 (590)
Q Consensus 146 ~IlV~Tp~rl-~~~l~~~~~-----~~~~~l~~lVlDEah~ll-~~g---------------f~~~l~~il~~l------ 197 (590)
+|..||..-+ +|.|...-. .....+.+.|+||+|.+| |.. ....+..+...|
T Consensus 216 DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy 295 (822)
T 3jux_A 216 DVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDF 295 (822)
T ss_dssp SEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTE
T ss_pred CCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcE
Confidence 9999999876 566654322 234678899999999854 311 001111111111
Q ss_pred --------------------------------------------cc-----CCC-------------CCCCCC--CC---
Q 007774 198 --------------------------------------------GS-----RNI-------------GSIGEG--NE--- 210 (590)
Q Consensus 198 --------------------------------------------~~-----~~~-------------~~~~~~--~~--- 210 (590)
.. ... ...+.. ..
T Consensus 296 ~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s 375 (822)
T 3jux_A 296 TVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYS 375 (822)
T ss_dssp EECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCG
T ss_pred EEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCc
Confidence 10 000 000000 00
Q ss_pred --------------c---------------cccCceEEEEeecccchHHHHHHhhcCCCEEEecCCCCCCCCcccccccC
Q 007774 211 --------------V---------------SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGS 261 (590)
Q Consensus 211 --------------~---------------~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~~~~~~~~ 261 (590)
. -+--..+.+||+|.......+...+.-+ .+.+....
T Consensus 376 ~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnk------------ 441 (822)
T 3jux_A 376 GGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHK------------ 441 (822)
T ss_dssp GGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSS------------
T ss_pred hHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCC------------
Confidence 0 0112358899999988777777665322 33332211
Q ss_pred ccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhh
Q 007774 262 LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341 (590)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~ 341 (590)
+....-.+..+..+...|...+...+.... ..+.++||||+|++.++.++..|..
T Consensus 442 -----------------------p~~R~d~~d~vy~t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e~sE~Ls~~L~~ 496 (822)
T 3jux_A 442 -----------------------PMIRKDHDDLVFRTQKEKYEKIVEEIEKRY--KKGQPVLVGTTSIEKSELLSSMLKK 496 (822)
T ss_dssp -----------------------CCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESSHHHHHHHHHHHHT
T ss_pred -----------------------CcceeecCcEEEecHHHHHHHHHHHHHHHh--hCCCCEEEEECCHHHHHHHHHHHHH
Confidence 000111122445566788888888887653 2357999999999999999999988
Q ss_pred ccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCC--------CCcEEEEecC
Q 007774 342 FQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP--------KVKCIIQYDS 413 (590)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip--------~v~~VI~~d~ 413 (590)
. ++++..+||++.+.+|..+.+.|+.| .|+||||+|+||+||+ ++.+||+++.
T Consensus 497 ~-----------------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~ 557 (822)
T 3jux_A 497 K-----------------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTER 557 (822)
T ss_dssp T-----------------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSC
T ss_pred C-----------------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCC
Confidence 7 78889999996666666666666655 6999999999999998 6679999999
Q ss_pred CCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 414 p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
|.++..|+||+|||||.|.+|.+++|+++.|.
T Consensus 558 Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 558 HESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99999999999999999999999999998773
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=7.7e-33 Score=315.09 Aligned_cols=348 Identities=17% Similarity=0.137 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHhc--------------CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 41 APTKVQAQAIPVILS--------------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~--------------g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
.|+|+|..|++.++. +++++++++||||||+++ ++++..+... ....++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~------~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL------DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC------TTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc------CCCceEEEEeCcHHHH
Confidence 499999999999875 368999999999999997 6666655321 2346899999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhc-CCCcEEEECChHHHHHHhccCCC-CCCceeEEEEechhhhhhc
Q 007774 107 LQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILEL 184 (590)
Q Consensus 107 ~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah~ll~~ 184 (590)
.|+.+.+..+... .+.++.+.......+. .+++|+|+||++|.+++.....+ .+....+||+|||||+..
T Consensus 344 ~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-
Confidence 9999999876431 1235556666666664 56899999999999887653222 345778999999999764
Q ss_pred CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHH-----HHHHhhcCCCEEEecC-----CCCCCCCc
Q 007774 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVN-----HLAKISLETPVLIGLD-----EKKLPEDK 254 (590)
Q Consensus 185 gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~-----~l~~~~l~~p~~i~~~-----~~~~~~~~ 254 (590)
......|...+| ..++++||||+..... .... .++++...-.- ...+.+.
T Consensus 416 --~~~~~~I~~~~p----------------~a~~lgfTATP~~~~~~~~~~~t~~-~FG~~i~~Y~l~~AI~dg~l~p~- 475 (1038)
T 2w00_A 416 --GEAQKNLKKKFK----------------RYYQFGFTGTPIFPENALGSETTAS-VFGRELHSYVITDAIRDEKVLKF- 475 (1038)
T ss_dssp --HHHHHHHHHHCS----------------SEEEEEEESSCCCSTTCTTSCCHHH-HHCSEEEEECHHHHHHHTSSCCE-
T ss_pred --hHHHHHHHHhCC----------------cccEEEEeCCccccccchhhhHHHH-HhCCeeEeecHHHHHhCCCcCCe-
Confidence 344566777776 5899999999874321 1111 12222211100 0000000
Q ss_pred ccccccCccccchhhccCCCccccccccccCCcccceeEEEEecCCChHHHHHHHHHhhhcc--------cCCceEEEEe
Q 007774 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDT--------EVSQKLVVFF 326 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~--------~~~~k~iVF~ 326 (590)
...+............. .. ......+.+... .....+...+...+...+.. ..+.++||||
T Consensus 476 -~v~y~~v~~~~~~~~~e-----~d----~~~~~~i~~~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~ 544 (1038)
T 2w00_A 476 -KVDYNDVRPQFKSLETE-----TD----EKKLSAAENQQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAV 544 (1038)
T ss_dssp -EEEECCCCGGGHHHHTC-----CC----HHHHHHTCSTTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEE
T ss_pred -EEEEEeccchhhhcccc-----cc----HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEE
Confidence 00000000000000000 00 000000000000 11223444544433332211 1346899999
Q ss_pred cchhhHHHHHHhhhhccCC--CCCCChhHHHhhhcCcce-EeccCC----------C----------Ch-----------
Q 007774 327 STCDAVDFHYSLLSEFQWS--PHSQPDMELKQLFLRCKT-FRLHGN----------M----------KQ----------- 372 (590)
Q Consensus 327 ~t~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~v-~~lhg~----------~----------~~----------- 372 (590)
+|++.|..++..|.+.... .+. ....+..+ ..+||+ + ++
T Consensus 545 ~S~~~A~~~~~~l~~~~~~~~~~~-------~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~ 617 (1038)
T 2w00_A 545 SSVDAAKAYYATFKRLQEEAANKS-------ATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIR 617 (1038)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTTS-------SSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhhhhcccc-------cccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHH
Confidence 9999999999999876310 000 00012333 345542 2 22
Q ss_pred ------------------HHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCC-
Q 007774 373 ------------------EDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGER- 433 (590)
Q Consensus 373 ------------------~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~- 433 (590)
..|..++++|++|+.+|||+||++.+|+|+|.+ .|+.+|.|.+...|+||+||++|.+..
T Consensus 618 dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~ 696 (1038)
T 2w00_A 618 EYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDAT 696 (1038)
T ss_dssp HHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTT
T ss_pred HHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCC
Confidence 248889999999999999999999999999999 678999999999999999999999864
Q ss_pred ---ccEEEEeCc
Q 007774 434 ---GDSLLFLQP 442 (590)
Q Consensus 434 ---g~~i~~l~~ 442 (590)
|.++.|...
T Consensus 697 K~~G~IVdf~~~ 708 (1038)
T 2w00_A 697 KTFGNIVTFRDL 708 (1038)
T ss_dssp CCSEEEEESSCC
T ss_pred CCcEEEEEcccc
Confidence 667766653
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=2.1e-30 Score=286.24 Aligned_cols=369 Identities=18% Similarity=0.220 Sum_probs=230.4
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 41 APTKVQAQAIPVIL---------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 41 ~~t~~Q~~~i~~il---------~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
.|+|||.+++..+. .++.+|+..+||+|||+.++..+...+..... .+....++|||+|+ .|+.||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~--~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD--CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT--SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc--ccCCCCcEEEEecH-HHHHHHHH
Confidence 58999999998874 45679999999999999998877776543211 11223569999997 89999999
Q ss_pred HHHHHHhhcCCcceEEEEcCCchHHHH---HHhc-----CCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh
Q 007774 112 ILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-----KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-----~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
++.++... ...+..+.||....... ..+. ...+|+|+|++.+..... .+....+++||+||||++-+
T Consensus 132 E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCC
Confidence 99998763 23344455554332221 1122 137899999999976543 23345788999999999876
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccch-HHHHHHh------------------h--------
Q 007774 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK-VNHLAKI------------------S-------- 236 (590)
Q Consensus 184 ~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~-~~~l~~~------------------~-------- 236 (590)
.. ......+..++ ....+++|||+-.+ +.++..+ +
T Consensus 207 ~~--~~~~~al~~l~----------------~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~ 268 (644)
T 1z3i_X 207 SD--NQTYLALNSMN----------------AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGR 268 (644)
T ss_dssp TC--HHHHHHHHHHC----------------CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHH
T ss_pred hh--hHHHHHHHhcc----------------cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcC
Confidence 42 34444555564 45779999998321 1111100 0
Q ss_pred ---------------------cCCCEEEecCCCC----CCCCcccccccCccccc-----------hhh--cc-------
Q 007774 237 ---------------------LETPVLIGLDEKK----LPEDKSHVRFGSLESDV-----------KEE--VE------- 271 (590)
Q Consensus 237 ---------------------l~~p~~i~~~~~~----~~~~~~~~~~~~~~~~~-----------~~~--~~------- 271 (590)
+-.|..+...... ++.......+....... ... ..
T Consensus 269 ~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~ 348 (644)
T 1z3i_X 269 DADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVS 348 (644)
T ss_dssp STTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchh
Confidence 0001111110000 00000000000000000 000 00
Q ss_pred -------------CCCcc-------cccc-ccccCCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchh
Q 007774 272 -------------HPSTT-------MRST-TEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (590)
Q Consensus 272 -------------~~~~~-------~~~~-~~~~~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~ 330 (590)
++... .... ......|..............|+..|..++..... ..+.++|||+++..
T Consensus 349 ~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~-~~~~k~lIFs~~~~ 427 (644)
T 1z3i_X 349 SLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRT-TTSDKVVLVSNYTQ 427 (644)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHH-HCCCEEEEEESCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhh-cCCCEEEEEEccHH
Confidence 00000 0000 00000011111001111234566666666655421 34689999999999
Q ss_pred hHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCcc---EEEeccccccCCCCCCCcE
Q 007774 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVKC 407 (590)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~---vLiaTdv~~rGlDip~v~~ 407 (590)
.++.+...|... ++.+..+||++++.+|.+++++|+++... +|++|+++++|||++++++
T Consensus 428 ~~~~l~~~l~~~-----------------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~ 490 (644)
T 1z3i_X 428 TLDLFEKLCRNR-----------------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANR 490 (644)
T ss_dssp HHHHHHHHHHHH-----------------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEE
T ss_pred HHHHHHHHHHHC-----------------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCE
Confidence 999999999876 77899999999999999999999998764 8999999999999999999
Q ss_pred EEEecCCCChhHHHhhhccccCCCCCccEEE--EeCcc--chHHHHHHHH
Q 007774 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLL--FLQPV--EMDYLQDLEK 453 (590)
Q Consensus 408 VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~--~l~~~--e~~~~~~l~~ 453 (590)
||+||+|+++..|.|++||++|.|+...+.+ |+... |...+..+..
T Consensus 491 Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~ 540 (644)
T 1z3i_X 491 LVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 540 (644)
T ss_dssp EEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred EEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHH
Confidence 9999999999999999999999998876555 44443 4444444443
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.7e-31 Score=300.58 Aligned_cols=364 Identities=17% Similarity=0.242 Sum_probs=232.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~~il----~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.++|+|.+++..++ .++++|+..+||+|||+.++..+...+... .....+||||| ..|+.||.+.+.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 58999999998776 788999999999999999887776655432 22455899999 67899999999988
Q ss_pred HhhcCCcceEEEEcCCchHHHHHH------------hcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhc
Q 007774 117 LHRFHWIVPGYVMGGENRSKEKAR------------LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (590)
Q Consensus 117 ~~~~~~~~~~~~~gg~~~~~~~~~------------l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~ 184 (590)
+ +...+.+..|+......... .....+|+|+|++.+...... +....+++||+||||++-+.
T Consensus 309 ~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 309 A---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp S---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCS
T ss_pred C---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCc
Confidence 5 34445555555443332221 123478999999999765432 22237899999999998653
Q ss_pred CchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeeccc-chHHHHHHh-hcCCCEEEecCCC--------------
Q 007774 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKI-SLETPVLIGLDEK-------------- 248 (590)
Q Consensus 185 gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~-~~~~~l~~~-~l~~p~~i~~~~~-------------- 248 (590)
.......+..++ ....+++|||+- +...++..+ .+-.|........
T Consensus 383 --~s~~~~~l~~l~----------------~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~ 444 (800)
T 3mwy_W 383 --ESSLYESLNSFK----------------VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYI 444 (800)
T ss_dssp --SSHHHHHHTTSE----------------EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHH
T ss_pred --hhHHHHHHHHhh----------------hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHH
Confidence 334444444443 466799999983 333333221 1112211111000
Q ss_pred -----------------C----CCCCcccccccCccccchhh----ccCCCccccccc--cccC-------------Ccc
Q 007774 249 -----------------K----LPEDKSHVRFGSLESDVKEE----VEHPSTTMRSTT--EDFK-------------LPA 288 (590)
Q Consensus 249 -----------------~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~-------------~~~ 288 (590)
. ++.................. ............ .... .|.
T Consensus 445 ~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~ 524 (800)
T 3mwy_W 445 HDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPY 524 (800)
T ss_dssp HHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChh
Confidence 0 00000000000000000000 000000000000 0000 000
Q ss_pred c--------ce---eE--------EEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCC
Q 007774 289 Q--------LV---QR--------YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ 349 (590)
Q Consensus 289 ~--------l~---~~--------~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~ 349 (590)
- +. .. ...+....|+..|..+|..+. ..+.++|||+.....++.+...|...
T Consensus 525 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~--~~g~kvLIFsq~~~~ld~L~~~L~~~------- 595 (800)
T 3mwy_W 525 LFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK--KDGHRVLIFSQMVRMLDILGDYLSIK------- 595 (800)
T ss_dssp GSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCCEEEEESCHHHHHHHHHHHHHH-------
T ss_pred hhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHh--hCCCeEEEEechHHHHHHHHHHHHhC-------
Confidence 0 00 00 000123557777888887764 34689999999999999999999876
Q ss_pred ChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCc---cEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhcc
Q 007774 350 PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK---ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426 (590)
Q Consensus 350 ~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~---~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GR 426 (590)
++.+..+||+++..+|..+++.|+++.. .+|++|+++++|||++.+++||+||+|+|+..++||+||
T Consensus 596 ----------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR 665 (800)
T 3mwy_W 596 ----------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMAR 665 (800)
T ss_dssp ----------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTT
T ss_pred ----------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHH
Confidence 7889999999999999999999998655 489999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEE--EeCcc--chHHHHHHHHc
Q 007774 427 TARLGERGDSLL--FLQPV--EMDYLQDLEKH 454 (590)
Q Consensus 427 t~R~g~~g~~i~--~l~~~--e~~~~~~l~~~ 454 (590)
+.|.|+...+.+ |+... |...++.+.++
T Consensus 666 ~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K 697 (800)
T 3mwy_W 666 AHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp TSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred HHhcCCCceEEEEEEecCCCHHHHHHHHHHHH
Confidence 999998776655 34443 55666655554
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=1.1e-28 Score=272.12 Aligned_cols=136 Identities=19% Similarity=0.302 Sum_probs=118.7
Q ss_pred cCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHH
Q 007774 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (590)
Q Consensus 298 ~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~ 377 (590)
+...+...+...+.... ..+.++||||+|+..++.+++.|... ++.+..+||+|++.+|.+
T Consensus 420 ~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~-----------------gi~~~~lh~~~~~~~R~~ 480 (664)
T 1c4o_A 420 PTENQILDLMEGIRERA--ARGERTLVTVLTVRMAEELTSFLVEH-----------------GIRARYLHHELDAFKRQA 480 (664)
T ss_dssp CSTTHHHHHHHHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTCCHHHHHH
T ss_pred cccchHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhc-----------------CCCceeecCCCCHHHHHH
Confidence 34456666666666543 24679999999999999999999887 778889999999999999
Q ss_pred HHHHhhccCccEEEeccccccCCCCCCCcEEEEecC-----CCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHH
Q 007774 378 TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 378 ~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~-----p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~ 452 (590)
+++.|+.|+..|||||+++++|+|+|+|++||++|. |.+..+|+||+|||||.| .|.+++|+.+.+..+...++
T Consensus 481 ~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 481 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999999999999999999999999999999998 999999999999999995 79999999988776655554
Q ss_pred H
Q 007774 453 K 453 (590)
Q Consensus 453 ~ 453 (590)
+
T Consensus 560 ~ 560 (664)
T 1c4o_A 560 E 560 (664)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=1.5e-27 Score=258.26 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=122.2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+|+ +||++|..++|.++.|+ +++++||||||++|++|++..... |..++||+||++||.|.++++..
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 4899 79999999999999998 999999999999999999654432 45799999999999999999999
Q ss_pred HHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHH-HHHHhccC-----CCCCC---ceeEEEEechhhhh-hcC
Q 007774 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHT---NLRWIIFDEADRIL-ELG 185 (590)
Q Consensus 116 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~-----~~~~~---~l~~lVlDEah~ll-~~g 185 (590)
+...+ .+.+++++||.+... .....+++|+|||||+| +|+|.... .+.+. .+.++|+||||+++ +.+
T Consensus 143 l~~~l-GLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDea 219 (997)
T 2ipc_A 143 VYRGL-GLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEA 219 (997)
T ss_dssp HHHTT-TCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSST
T ss_pred HHHhc-CCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCC
Confidence 99854 578889999987433 33345799999999999 89888753 24566 89999999999988 433
Q ss_pred c---------------hHHHHHHHHHhcc
Q 007774 186 F---------------GKEIEEILDILGS 199 (590)
Q Consensus 186 f---------------~~~l~~il~~l~~ 199 (590)
. ...+..++..++.
T Consensus 220 rtPLIISgp~~~~~~lY~~~~~~i~~L~~ 248 (997)
T 2ipc_A 220 RTPLIISGPAEKATDLYYKMAEIAKKLER 248 (997)
T ss_dssp TSCEEEEESCSSCHHHHHHHHHHHHHSCC
T ss_pred CCCeeeeCCCccchHHHHHHHHHHHHhhh
Confidence 2 2456777777765
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=6.9e-28 Score=265.64 Aligned_cols=135 Identities=19% Similarity=0.303 Sum_probs=118.2
Q ss_pred cCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHH
Q 007774 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (590)
Q Consensus 298 ~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~ 377 (590)
+...+...+...+.... ..+.++||||+|+..++.+++.|... ++.+..+||++++.+|.+
T Consensus 426 ~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~-----------------gi~~~~lh~~~~~~~R~~ 486 (661)
T 2d7d_A 426 PIEGQIDDLIGEIQARI--ERNERVLVTTLTKKMSEDLTDYLKEI-----------------GIKVNYLHSEIKTLERIE 486 (661)
T ss_dssp CSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTCCHHHHHH
T ss_pred cccchHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHhc-----------------CCCeEEEeCCCCHHHHHH
Confidence 34455666666666544 24679999999999999999999887 778889999999999999
Q ss_pred HHHHhhccCccEEEeccccccCCCCCCCcEEEEecC-----CCChhHHHhhhccccCCCCCccEEEEeCccchHHHHHHH
Q 007774 378 TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (590)
Q Consensus 378 ~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~-----p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~~l~ 452 (590)
+++.|++|+..|||||+++++|+|+|+|++||++|. |.+...|+||+|||||. ..|.+++|+.+.+..+...++
T Consensus 487 ~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 487 IIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 999999999999999999999999999999999998 99999999999999998 789999999998766555444
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=2.3e-28 Score=222.21 Aligned_cols=154 Identities=29% Similarity=0.500 Sum_probs=142.7
Q ss_pred CcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEe
Q 007774 286 LPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (590)
Q Consensus 286 ~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ 365 (590)
.+.++.|+++.++.+.|+..|..++... .+.++||||++.+.++.++..|... ++.+..
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~ 64 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDL-----------------GYPCDK 64 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHT-----------------TCCEEE
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHc-----------------CCcEEE
Confidence 4567999999999999999999998874 4679999999999999999999876 778999
Q ss_pred ccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccch
Q 007774 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (590)
Q Consensus 366 lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~ 445 (590)
+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+.|.
T Consensus 65 ~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 65 IHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEK 144 (163)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGH
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCCCcc
Q 007774 446 DYLQDLEKH-GVSLTE 460 (590)
Q Consensus 446 ~~~~~l~~~-~~~~~~ 460 (590)
.++..+++. +.++.+
T Consensus 145 ~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 145 RFLADIEEYIGFEIQK 160 (163)
T ss_dssp HHHHHHHHHHTSCCEE
T ss_pred HHHHHHHHHHCCCcCc
Confidence 999999875 665544
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.3e-28 Score=223.04 Aligned_cols=156 Identities=27% Similarity=0.470 Sum_probs=141.5
Q ss_pred cccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEec
Q 007774 287 PAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (590)
Q Consensus 287 ~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l 366 (590)
+.++.|+|+.++.+.|+..|..++... ...++||||++.+.++.++..|... ++.+..+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~ 61 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQ-----------------NFPAIAI 61 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEE
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhc-----------------CCCEEEE
Confidence 567899999999999999999998864 4679999999999999999999876 7789999
Q ss_pred cCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCcc-ch
Q 007774 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EM 445 (590)
Q Consensus 367 hg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~-e~ 445 (590)
||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+. +.
T Consensus 62 hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 141 (172)
T 1t5i_A 62 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 141 (172)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHH
T ss_pred ECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 56
Q ss_pred HHHHHHHHc-CCCCccccc
Q 007774 446 DYLQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 446 ~~~~~l~~~-~~~~~~~~~ 463 (590)
.+++.+++. ++++.+++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 142 KILNDVQDRFEVNISELPD 160 (172)
T ss_dssp HHHHHHHHHHCCCEEECC-
T ss_pred HHHHHHHHHHhcchhhCCh
Confidence 788888776 777776654
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.3e-28 Score=222.10 Aligned_cols=158 Identities=22% Similarity=0.392 Sum_probs=140.5
Q ss_pred CcccceeEEEEecCCC-hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceE
Q 007774 286 LPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF 364 (590)
Q Consensus 286 ~~~~l~~~~~~~~~~~-k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ 364 (590)
.+.++.|+|+.++... |+..|..++... ...++||||+++..++.++..|... +..+.
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~ 62 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI----TIGQAIIFCQTRRNAKWLTVEMIQD-----------------GHQVS 62 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS----CCSEEEEECSCHHHHHHHHHHHHTT-----------------TCCEE
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHc-----------------CCcEE
Confidence 4678999999998766 999988888763 4679999999999999999999876 77899
Q ss_pred eccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCC------CChhHHHhhhccccCCCCCccEEE
Q 007774 365 RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA------GEATEYVHRVGRTARLGERGDSLL 438 (590)
Q Consensus 365 ~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p------~s~~~yiqr~GRt~R~g~~g~~i~ 438 (590)
.+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+| .++.+|+||+||+||.|+.|.+++
T Consensus 63 ~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~ 142 (175)
T 2rb4_A 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFN 142 (175)
T ss_dssp EECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEE
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EeCccchHHHHHHHHc-CCCCccccch
Q 007774 439 FLQPVEMDYLQDLEKH-GVSLTEYPLL 464 (590)
Q Consensus 439 ~l~~~e~~~~~~l~~~-~~~~~~~~~~ 464 (590)
|+.+.+..++..+++. +..+.+++..
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~ 169 (175)
T 2rb4_A 143 MIEVDELPSLMKIQDHFNSSIKQLNAE 169 (175)
T ss_dssp EECGGGHHHHHHHHHHHTCCCEEECSS
T ss_pred EEccchHHHHHHHHHHhcCcccccCCc
Confidence 9999999999998886 7777776643
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.7e-27 Score=216.95 Aligned_cols=154 Identities=26% Similarity=0.480 Sum_probs=135.2
Q ss_pred ccceeEEEEecCCC-hHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEec
Q 007774 288 AQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (590)
Q Consensus 288 ~~l~~~~~~~~~~~-k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l 366 (590)
.++.|+|+.++.+. |+..|..++... ...++||||++.+.++.++..|... ++.+..+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~ 60 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRND-----------------KFTVSAI 60 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHT-----------------TCCEEEE
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHc-----------------CCCEEEE
Confidence 45789999999887 999999988874 4689999999999999999999876 7789999
Q ss_pred cCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchH
Q 007774 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMD 446 (590)
Q Consensus 367 hg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~ 446 (590)
||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+.+.+..
T Consensus 61 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 61 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred ECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCCCcccc
Q 007774 447 YLQDLEKH-GVSLTEYP 462 (590)
Q Consensus 447 ~~~~l~~~-~~~~~~~~ 462 (590)
++..+++. +..+++++
T Consensus 141 ~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 141 AMRELEKFYSTQIEELP 157 (165)
T ss_dssp HHHHHHHHSSCCCEECC
T ss_pred HHHHHHHHHccCccccC
Confidence 99888775 66666554
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=2.7e-27 Score=224.53 Aligned_cols=155 Identities=31% Similarity=0.470 Sum_probs=139.4
Q ss_pred ccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEecc
Q 007774 288 AQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367 (590)
Q Consensus 288 ~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lh 367 (590)
....+.++.++...|+..|..++... .++++||||++++.++.++..|... ++.+..+|
T Consensus 4 i~~~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~lh 62 (212)
T 3eaq_A 4 VTYEEEAVPAPVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRL-----------------GHPAQALH 62 (212)
T ss_dssp CCBCCEEEECCTTSHHHHHHHHHHHH----CCSCEEEECSSHHHHHHHHHHHHHH-----------------TCCEEEEC
T ss_pred cceeeeEEeCCHHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHc-----------------CCCEEEEE
Confidence 34567788889999999999998763 4689999999999999999999876 77899999
Q ss_pred CCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHH
Q 007774 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDY 447 (590)
Q Consensus 368 g~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~ 447 (590)
|+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+.|..+
T Consensus 63 g~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~ 142 (212)
T 3eaq_A 63 GDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRD 142 (212)
T ss_dssp SSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCCCccccc
Q 007774 448 LQDLEKH-GVSLTEYPL 463 (590)
Q Consensus 448 ~~~l~~~-~~~~~~~~~ 463 (590)
+..+++. +..+.+++.
T Consensus 143 ~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 143 VEALERAVGRRFKRVNP 159 (212)
T ss_dssp HHHHHHHHSSCCEECCC
T ss_pred HHHHHHHhcCcCeecCC
Confidence 9999876 665555543
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=222.05 Aligned_cols=146 Identities=31% Similarity=0.496 Sum_probs=130.3
Q ss_pred CcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEe
Q 007774 286 LPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (590)
Q Consensus 286 ~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ 365 (590)
.+.++.|.+..++...|+..|..++... +.++||||+++..++.++..|... ++.+..
T Consensus 26 ~~~~i~q~~~~~~~~~K~~~L~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~~-----------------g~~~~~ 83 (191)
T 2p6n_A 26 ASLDVIQEVEYVKEEAKMVYLLECLQKT-----PPPVLIFAEKKADVDAIHEYLLLK-----------------GVEAVA 83 (191)
T ss_dssp --CCSEEEEEECCGGGHHHHHHHHHTTS-----CSCEEEECSCHHHHHHHHHHHHHH-----------------TCCEEE
T ss_pred CCcCceEEEEEcChHHHHHHHHHHHHhC-----CCCEEEEECCHHHHHHHHHHHHHc-----------------CCcEEE
Confidence 4567889999999999999999888752 468999999999999999999876 778999
Q ss_pred ccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCcc-c
Q 007774 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-E 444 (590)
Q Consensus 366 lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~-e 444 (590)
+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred hHHHHHHHH
Q 007774 445 MDYLQDLEK 453 (590)
Q Consensus 445 ~~~~~~l~~ 453 (590)
..++..+++
T Consensus 164 ~~~~~~l~~ 172 (191)
T 2p6n_A 164 ESVLMDLKA 172 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776665
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=218.28 Aligned_cols=150 Identities=30% Similarity=0.459 Sum_probs=124.3
Q ss_pred CCcccceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceE
Q 007774 285 KLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF 364 (590)
Q Consensus 285 ~~~~~l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ 364 (590)
..+.++.|.++.++...|+..|..++... ..+.++||||++++.++.++..|... ++.+.
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~-----------------g~~~~ 74 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE-----------------GYACT 74 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT-----------------TCCEE
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc-----------------CCceE
Confidence 45778999999999999999999999874 24689999999999999999999876 77899
Q ss_pred eccCCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccc
Q 007774 365 RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (590)
Q Consensus 365 ~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e 444 (590)
.+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+.+.+
T Consensus 75 ~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 154 (185)
T 2jgn_A 75 SIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 154 (185)
T ss_dssp EEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGG
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHc
Q 007774 445 MDYLQDLEKH 454 (590)
Q Consensus 445 ~~~~~~l~~~ 454 (590)
..+++.+.+.
T Consensus 155 ~~~~~~l~~~ 164 (185)
T 2jgn_A 155 INITKDLLDL 164 (185)
T ss_dssp GGGHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776653
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=2.6e-26 Score=227.94 Aligned_cols=153 Identities=32% Similarity=0.479 Sum_probs=136.5
Q ss_pred ceeEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCC
Q 007774 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369 (590)
Q Consensus 290 l~~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~ 369 (590)
+.++++.++...|+..|..++... .+.++||||++++.++.++..|... ++.+..+||+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~-----------------g~~~~~lhg~ 61 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRL-----------------GHPAQALHGD 61 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTT-----------------TCCEEEECSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhC-----------------CCCEEEEeCC
Confidence 578899999999999999998774 3689999999999999999999876 7789999999
Q ss_pred CChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHHHH
Q 007774 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQ 449 (590)
Q Consensus 370 ~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~~~ 449 (590)
|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|+++..|+||+|||||.|+.|.+++|+.+.|..++.
T Consensus 62 l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~ 141 (300)
T 3i32_A 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVE 141 (300)
T ss_dssp CCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHH
T ss_pred CCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCCCccccc
Q 007774 450 DLEKH-GVSLTEYPL 463 (590)
Q Consensus 450 ~l~~~-~~~~~~~~~ 463 (590)
.+++. +..+..++.
T Consensus 142 ~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 142 ALERAVGRRFKRVNP 156 (300)
T ss_dssp HHHHHHTCCCEECCC
T ss_pred HHHHHhCCcceEeCC
Confidence 99886 666655543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=2.7e-27 Score=216.69 Aligned_cols=152 Identities=26% Similarity=0.435 Sum_probs=136.4
Q ss_pred cceeEEEEecC-CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEecc
Q 007774 289 QLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367 (590)
Q Consensus 289 ~l~~~~~~~~~-~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lh 367 (590)
++.|.++.++. ..|+..|..++.. ..+.++||||++.+.++.++..|... ++.+..+|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~iVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~~ 61 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ----PEATRSIVFVRKRERVHELANWLREA-----------------GINNCYLE 61 (170)
Confidence 46778888887 8899888888876 24679999999999999999999876 67888999
Q ss_pred CCCChHHHHHHHHHhhccCccEEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEEEeCccchHH
Q 007774 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDY 447 (590)
Q Consensus 368 g~~~~~~R~~~~~~F~~~~~~vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~~l~~~e~~~ 447 (590)
|+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+.+..+
T Consensus 62 g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 62 GEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHc-CCCCccc
Q 007774 448 LQDLEKH-GVSLTEY 461 (590)
Q Consensus 448 ~~~l~~~-~~~~~~~ 461 (590)
+..+++. +..+.+.
T Consensus 142 ~~~~~~~~~~~~~~~ 156 (170)
T 2yjt_D 142 LGKVGRYIEEPIKAR 156 (170)
Confidence 8888764 4444433
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=205.38 Aligned_cols=190 Identities=18% Similarity=0.142 Sum_probs=123.7
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHH
Q 007774 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (590)
Q Consensus 27 ~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa 106 (590)
+..+.......+...|+++|.++++.++.++++++.+|||+|||++|++++++.+...... ..+.++||++||++|+
T Consensus 19 ~~~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~ 95 (216)
T 3b6e_A 19 EENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLV 95 (216)
T ss_dssp HHHHHHHTCCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHH
T ss_pred chhhhcccCccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHH
Confidence 3333333233344469999999999999999999999999999999999999877542211 2356799999999999
Q ss_pred HH-HHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCC-----CCCCceeEEEEechhh
Q 007774 107 LQ-VYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-----FLHTNLRWIIFDEADR 180 (590)
Q Consensus 107 ~Q-~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-----~~~~~l~~lVlDEah~ 180 (590)
.| +.+.+..+... ...+..+.|+.........+..+++|+|+||++|.+.+..... +.+.++++||+||||+
T Consensus 96 ~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~ 173 (216)
T 3b6e_A 96 EQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 173 (216)
T ss_dssp HHHHHHTHHHHHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--
T ss_pred HHHHHHHHHHHhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchh
Confidence 99 88888888653 3456666676655444444445689999999999998876432 4567899999999999
Q ss_pred hhhcCchHHH-HHHHHHh-ccCCCCCCCCCCCccccCceEEEEeec
Q 007774 181 ILELGFGKEI-EEILDIL-GSRNIGSIGEGNEVSNVKRQNLLLSAT 224 (590)
Q Consensus 181 ll~~gf~~~l-~~il~~l-~~~~~~~~~~~~~~~~~~~q~il~SAT 224 (590)
+.+.++...+ ..++... +...... .........+++++|||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 174 TNKEAVYNNIMRHYLMQKLKNNRLKK---ENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCEEEEEECC
T ss_pred hccCCcHHHHHHHHHHHhcccccccc---cccCCCCcceEEEeecC
Confidence 9887655544 3333222 1000000 00000126899999998
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=202.63 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=128.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.++++|.++++.+..|+++++.|+||||||.++.+++++.+..... ..+.++++++|+++|+.|+++.+.......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3799999999999999999999999999999999999887654221 234689999999999999998887654322
Q ss_pred CCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhh-hhcCch-HHHHHHHHHhc
Q 007774 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI-LELGFG-KEIEEILDILG 198 (590)
Q Consensus 121 ~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l-l~~gf~-~~l~~il~~l~ 198 (590)
....++.-...... ....+++|+|+|||+|++++.. .+.++++||+||||++ ++++|. ..++.++...+
T Consensus 137 ~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~ 207 (235)
T 3llm_A 137 PGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 207 (235)
T ss_dssp TTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC
Confidence 22223322221110 1124578999999999999876 3679999999999986 787777 56677766654
Q ss_pred cCCCCCCCCCCCccccCceEEEEeecccchHHHHHHhhcCCCE
Q 007774 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241 (590)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~ 241 (590)
+.|+++||||++... +...+...|+
T Consensus 208 ----------------~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 208 ----------------EVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp ----------------TSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred ----------------CCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 689999999999765 6666665554
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.2e-22 Score=219.73 Aligned_cols=129 Identities=24% Similarity=0.269 Sum_probs=86.2
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHH
Q 007774 37 LGFEAPTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (590)
Q Consensus 37 ~g~~~~t~~Q~~~i~~----il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 112 (590)
+|| .|+++|.+++.. +..|++++++||||+|||++|++|++.. +.+++|++||++|+.|+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHH
Confidence 478 599999998654 5678999999999999999999998763 46799999999999999988
Q ss_pred HHHHHhhcCCcceEEEEcCCch--------H------------------------HHH---------------HHhcCCC
Q 007774 113 LHKLLHRFHWIVPGYVMGGENR--------S------------------------KEK---------------ARLRKGI 145 (590)
Q Consensus 113 ~~~~~~~~~~~~~~~~~gg~~~--------~------------------------~~~---------------~~l~~~~ 145 (590)
+..+. .....+.|.... . ..+ .....++
T Consensus 71 ~~~l~-----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 71 AKLLG-----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HGGGT-----CCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHhcC-----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 77631 112222221100 0 000 0112357
Q ss_pred cEEEECChHHHHHHhccCCC------CCCceeEEEEechhhhhh
Q 007774 146 SILVATPGRLLDHLKHTSSF------LHTNLRWIIFDEADRILE 183 (590)
Q Consensus 146 ~IlV~Tp~rl~~~l~~~~~~------~~~~l~~lVlDEah~ll~ 183 (590)
+|||+||+.|++........ .+....++||||||+|.+
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 99999999998865431111 235678999999999844
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=1.5e-21 Score=211.75 Aligned_cols=132 Identities=17% Similarity=0.104 Sum_probs=97.8
Q ss_pred CCCCCcHHHHHHHHH----HhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 38 GFEAPTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~----il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
||+ ++|+|.+.+.. +..|++++++||||+|||++|++|++.. +.+++|++||++|+.|+.+++
T Consensus 1 ~~~-~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MVK-LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CCS-CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHH
Confidence 464 99999997764 4579999999999999999999999972 467999999999999999988
Q ss_pred HHHHhhcCCcceEEEEcCCch---------------------------------HHHH------------------HHhc
Q 007774 114 HKLLHRFHWIVPGYVMGGENR---------------------------------SKEK------------------ARLR 142 (590)
Q Consensus 114 ~~~~~~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~l~ 142 (590)
..+.... .+....+.|+.+. .... ....
T Consensus 68 ~~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 68 TKIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TTCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 8775432 3444444443211 0111 2223
Q ss_pred CCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhh
Q 007774 143 KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 143 ~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~ 183 (590)
.+++|||+||+.|++..............++||||||+|.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 56899999999999886443321224667899999999988
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=1.8e-22 Score=200.52 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=122.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.|+++|.++++.++.+++.++++|||||||++++.++...+.. .+.++||++||++|+.|+.+.+.++.. .
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~-~ 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRL-F 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTS-C
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcc-c
Confidence 6999999999999988899999999999999999988877653 224799999999999999999998854 2
Q ss_pred CCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhccC
Q 007774 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (590)
Q Consensus 121 ~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~~ 200 (590)
....+..+.||..... ....+.+|+|+||+++..... ..+..+++||+||||++.+ ..+..++..+..
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~----~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~- 251 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPK----EWFSQFGMMMNDECHLATG----KSISSIISGLNN- 251 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCG----GGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT-
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhHH----HHHhhCCEEEEECCccCCc----ccHHHHHHHhhc-
Confidence 3345566667754432 223468999999998865422 2456899999999999874 356666666543
Q ss_pred CCCCCCCCCCccccCceEEEEeecccchHHHHHH
Q 007774 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234 (590)
Q Consensus 201 ~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~ 234 (590)
..+++++|||+++....+..
T Consensus 252 --------------~~~~l~lSATp~~~~~~~~~ 271 (282)
T 1rif_A 252 --------------CMFKFGLSGSLRDGKANIMQ 271 (282)
T ss_dssp --------------CCEEEEECSSCCTTSTTHHH
T ss_pred --------------CCeEEEEeCCCCCcchHHHH
Confidence 68999999999866544443
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.80 E-value=2.7e-18 Score=187.64 Aligned_cols=71 Identities=25% Similarity=0.229 Sum_probs=60.9
Q ss_pred CCcHHHHHHHH----HHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIP----VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 41 ~~t~~Q~~~i~----~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
+|++.|.+.+. .+..|++++++||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 38999999985 45679999999999999999999999998754 2467999999999999999999888
Q ss_pred Hhh
Q 007774 117 LHR 119 (590)
Q Consensus 117 ~~~ 119 (590)
...
T Consensus 75 ~~~ 77 (620)
T 4a15_A 75 SST 77 (620)
T ss_dssp HHH
T ss_pred hhc
Confidence 663
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=3.3e-19 Score=171.79 Aligned_cols=137 Identities=23% Similarity=0.199 Sum_probs=108.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.|+++|.++++.++.++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.+.++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 5899999999999999999999999999999998877652 356999999999999999998873
Q ss_pred CCcc-eEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 121 HWIV-PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 121 ~~~~-~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
+ .. ++.+.|+.. ...+|+|+||+.+....... ...+++||+||||++.+..|. .++..++
T Consensus 157 ~-~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~----~i~~~~~- 217 (237)
T 2fz4_A 157 G-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV----QIAQMSI- 217 (237)
T ss_dssp C-GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH----HHHHTCC-
T ss_pred C-CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHH----HHHHhcc-
Confidence 2 34 566666543 25689999999998766531 246889999999999876654 3444443
Q ss_pred CCCCCCCCCCCccccCceEEEEeecccc
Q 007774 200 RNIGSIGEGNEVSNVKRQNLLLSATLNE 227 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~q~il~SAT~~~ 227 (590)
..+++++|||+..
T Consensus 218 ---------------~~~~l~LSATp~r 230 (237)
T 2fz4_A 218 ---------------APFRLGLTATFER 230 (237)
T ss_dssp ---------------CSEEEEEEESCC-
T ss_pred ---------------CCEEEEEecCCCC
Confidence 5788999999864
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=4.4e-19 Score=173.90 Aligned_cols=139 Identities=15% Similarity=0.247 Sum_probs=103.5
Q ss_pred ecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHH
Q 007774 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (590)
Q Consensus 297 ~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~ 376 (590)
.....|+..|..+|..... .+.++||||++...++.+...|.... ++.+..+||++++.+|.
T Consensus 92 ~~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~----------------g~~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKEL----------------NTEVPFLYGELSKKERD 153 (271)
T ss_dssp STTCHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHH----------------CSCCCEECTTSCHHHHH
T ss_pred cccCHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhc----------------CCcEEEEECCCCHHHHH
Confidence 3457899999999988652 46899999999999999999997621 66788899999999999
Q ss_pred HHHHHhhcc-Ccc-EEEeccccccCCCCCCCcEEEEecCCCChhHHHhhhccccCCCCCccEEE--EeCcc--chHHHHH
Q 007774 377 TTFGAFKTE-KKA-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLL--FLQPV--EMDYLQD 450 (590)
Q Consensus 377 ~~~~~F~~~-~~~-vLiaTdv~~rGlDip~v~~VI~~d~p~s~~~yiqr~GRt~R~g~~g~~i~--~l~~~--e~~~~~~ 450 (590)
+++++|+++ +.. +|++|+++++|+|++.+++||+||+||++..|+||+||++|.|+.+.+.+ |+... |...++.
T Consensus 154 ~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~ 233 (271)
T 1z5z_A 154 DIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQL 233 (271)
T ss_dssp HHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHH
Confidence 999999998 666 78899999999999999999999999999999999999999999887644 44443 4444444
Q ss_pred HHH
Q 007774 451 LEK 453 (590)
Q Consensus 451 l~~ 453 (590)
+..
T Consensus 234 ~~~ 236 (271)
T 1z5z_A 234 LAF 236 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.97 E-value=2.4e-09 Score=116.90 Aligned_cols=146 Identities=22% Similarity=0.272 Sum_probs=90.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHH--HHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKT--VAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKT--l~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 119 (590)
-+++|+.+++.++.++.+++.|++||||| ++++++.+..+.. ..+.++++++||.++|.++.+.+......
T Consensus 150 ~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp SCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999 6778887775421 23567999999999999999988776654
Q ss_pred cCCcceEEEEcCCchHHHHHHhcCCCc-EEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHhc
Q 007774 120 FHWIVPGYVMGGENRSKEKARLRKGIS-ILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198 (590)
Q Consensus 120 ~~~~~~~~~~gg~~~~~~~~~l~~~~~-IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l~ 198 (590)
.+. ..... .+... .....+ ++-.+|+... +..... ....+++||+|||+ |++ ...+..++..++
T Consensus 223 l~l-~~~~~-~~~~~------~~~Tih~ll~~~~~~~~--~~~~~~-~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 223 LPL-TDEQK-KRIPE------DASTLHRLLGAQPGSQR--LRHHAG-NPLHLDVLVVDEAS-MID---LPMMSRLIDALP 287 (608)
T ss_dssp SSC-CSCCC-CSCSC------CCBTTTSCC-------------CTT-SCCSCSEEEECSGG-GCB---HHHHHHHHHTCC
T ss_pred CCC-CHHHH-hccch------hhhhhHhhhccCCCchH--HHhccC-CCCCCCEEEEechh-hCC---HHHHHHHHHhCC
Confidence 321 10000 00000 000111 2222333210 111111 11267899999999 555 466788888776
Q ss_pred cCCCCCCCCCCCccccCceEEEEeec
Q 007774 199 SRNIGSIGEGNEVSNVKRQNLLLSAT 224 (590)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~q~il~SAT 224 (590)
. ..|++++--.
T Consensus 288 ~---------------~~~liLvGD~ 298 (608)
T 1w36_D 288 D---------------HARVIFLGDR 298 (608)
T ss_dssp T---------------TCEEEEEECT
T ss_pred C---------------CCEEEEEcch
Confidence 4 5677776544
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.10 E-value=1.3e-05 Score=84.37 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=52.1
Q ss_pred hCCCCCCcHHHHHHHHHHhcC-----CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 36 RLGFEAPTKVQAQAIPVILSG-----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 36 ~~g~~~~t~~Q~~~i~~il~g-----~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.+.|..+++-|++++..++.. ..++|.|+.|||||... ..++..+... ....+++++||...|..+.
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHAAKKILS 91 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHHHHHHHH
Confidence 478999999999999877542 38999999999999654 3455555441 1236999999998887766
Q ss_pred HHH
Q 007774 111 EIL 113 (590)
Q Consensus 111 ~~~ 113 (590)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 554
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.00 E-value=1.8e-05 Score=85.38 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
.+++.|.+++..++.++.+++.|++|||||.... .++..+.. .+.++++++||...+..+.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES--------LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH--------TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh--------cCCeEEEecCcHHHHHHhHhhh
Confidence 3899999999999999999999999999996533 34444433 3567999999999887776643
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.92 E-value=3e-05 Score=85.37 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~d-vlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+.+-|.+|+..++..++ .||+||+|||||.+..-.+.+.+. .+.++|+++||..-+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~---------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK---------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh---------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 467899999999887665 699999999999886655555543 256799999999999998887754
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.89 E-value=6.9e-05 Score=81.99 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
..+++.|.+|+..++.+.-++|.||+|||||.+..-. +..+.. ..+.++++++||...+.++.+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~-i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI-VYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHH-HHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHH-HHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999888778899999999999875443 333332 13567999999999999998877653
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00015 Score=81.17 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
..+++.|.+|+..++.+.-++|.||+|||||.+..-.+...+.. .+.++|+++||...+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 35789999999999887778999999999998755444333321 2467999999999999999888764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.71 E-value=0.00018 Score=80.53 Aligned_cols=67 Identities=28% Similarity=0.355 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.+++.|.+|+..++.+.-.+|.||+|||||.+..- ++..+.. ..+.++++++||...+.++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHT-------TCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 47899999999998887889999999999987544 3444432 1356799999999999998887764
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.57 E-value=0.00026 Score=69.39 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=81.2
Q ss_pred ecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHH
Q 007774 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (590)
Q Consensus 297 ~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~ 376 (590)
+....|+..|..+|.... ..+.+++||+......+.+..++... ++....+.|..... +.
T Consensus 105 ~~~SGKf~~L~~LL~~l~--~~~~kVLIfsq~t~~LDilE~~l~~~-----------------~~~y~RlDG~~~~~-~~ 164 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQ--EYETETAIVCRPGRTMDLLEALLLGN-----------------KVHIKRYDGHSIKS-AA 164 (328)
T ss_dssp HHTCHHHHHHHHHHHHHT--TSCEEEEEEECSTHHHHHHHHHHTTS-----------------SCEEEESSSCCC-----
T ss_pred HHcCccHHHHHHHHHHHH--hCCCEEEEEECChhHHHHHHHHHhcC-----------------CCceEeCCCCchhh-hh
Confidence 357889999999998775 35789999999999999998888765 78889999985443 22
Q ss_pred HHHHHhhccCccEEEeccccccCCC-----CCCCcEEEEecCCCChhHH-HhhhccccCCC
Q 007774 377 TTFGAFKTEKKALLLSTDVAARGLD-----FPKVKCIIQYDSAGEATEY-VHRVGRTARLG 431 (590)
Q Consensus 377 ~~~~~F~~~~~~vLiaTdv~~rGlD-----ip~v~~VI~~d~p~s~~~y-iqr~GRt~R~g 431 (590)
+. .+....+.+.|....-|+| +...+.||.||+-+++..= +|.+-|+.|.|
T Consensus 165 k~----~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~ 221 (328)
T 3hgt_A 165 AA----NDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRER 221 (328)
T ss_dssp -------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---
T ss_pred hc----ccCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhc
Confidence 21 2344455444666666676 5689999999999999985 89888888874
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.54 E-value=0.0014 Score=66.42 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=83.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++||++-|..+++.+..+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 4899999999876555678999999999999877666654433 245679999999999999998888887654
Q ss_pred CC-cceEEEEcCCchHHHHHHhcCCCcEEEEC--ChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHh
Q 007774 121 HW-IVPGYVMGGENRSKEKARLRKGISILVAT--PGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (590)
Q Consensus 121 ~~-~~~~~~~gg~~~~~~~~~l~~~~~IlV~T--p~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l 197 (590)
+. ............ . .+..|..|.+.+ |+.+ . . .+.+++|+||+|.+-+ +...+..+...+
T Consensus 236 P~ll~~~~~~~~~~~---I-~f~nGs~i~~lsa~~~sl----r---G---~~~~~viiDE~a~~~~--~~el~~al~~~l 299 (385)
T 2o0j_A 236 PDFLQPGIVEWNKGS---I-ELDNGSSIGAYASSPDAV----R---G---NSFAMIYIEDCAFIPN--FHDSWLAIQPVI 299 (385)
T ss_dssp CTTTSCCEEEECSSE---E-EETTSCEEEEEECSHHHH----H---T---SCCSEEEEESGGGSTT--HHHHHHHHHHHH
T ss_pred hHhhhhhhccCCccE---E-EeCCCCEEEEEECCCCCc----c---C---CCCCEEEechhhhcCC--CHHHHHHHHHHh
Confidence 42 111111101000 0 112343333332 3322 1 1 2567899999998653 234444444444
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.17 E-value=0.0032 Score=68.32 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.|+|+|...+..+-..+.+++..+-|+|||.+....++..+.. ..+..+++++||++.|..+++.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 3899999999877556779999999999999876655555443 235679999999999999999888887654
Q ss_pred C
Q 007774 121 H 121 (590)
Q Consensus 121 ~ 121 (590)
+
T Consensus 236 p 236 (592)
T 3cpe_A 236 P 236 (592)
T ss_dssp C
T ss_pred h
Confidence 4
No 104
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.55 E-value=0.0039 Score=68.53 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=56.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
..+++-|.+++.. .+..++|.|+.|||||.+.+--+...+.... ....++|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3589999999973 3568999999999999887776666664321 134579999999999999999988774
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.43 E-value=0.016 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.2
Q ss_pred cCCcEEEEccCcchHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~ 75 (590)
.|+.+++.+|+|+|||...-.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 478899999999999965433
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.19 E-value=0.0026 Score=57.70 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=27.3
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
.|+-.++.+++|+|||...+--+.... . .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-L--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-H--------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCeEEEEeecc
Confidence 355678999999999977654443332 2 245688888873
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.06 E-value=0.012 Score=65.37 Aligned_cols=72 Identities=21% Similarity=0.187 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 40 ~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
..+++-|.+++.. .+..++|.|..|||||.+..--+...+.... .....+|+|+.|+..|.++.+.+..++.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 3589999999976 3568999999999999887776776665321 1346799999999999999998887753
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.91 E-value=0.012 Score=64.86 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+.... .....+|+|+.|+..|.++.+.+...+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 3668999999999999887776666665421 1345799999999999999999887643
No 109
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.90 E-value=0.014 Score=68.77 Aligned_cols=126 Identities=18% Similarity=0.117 Sum_probs=80.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Q 007774 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 120 (590)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+...... -...+++++++|+..|.++.+.+...+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~---~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENP---IDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC---CCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC---CCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 4899999999753 78999999999999998877778777652211 134579999999999999999888754321
Q ss_pred CCcceEEEEcCCchHHHHHHhcCCCcEEEECChHHHHHHhccCC--CCC-CceeEEEEechhh
Q 007774 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS--FLH-TNLRWIIFDEADR 180 (590)
Q Consensus 121 ~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~--~~~-~~l~~lVlDEah~ 180 (590)
... .... ......+..-.++-|+|-..+...+..... ..+ ..++ |+||...
T Consensus 85 ~~~------~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~--~~d~~~~ 138 (1232)
T 3u4q_A 85 LVQ------RPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFR--IADQTEG 138 (1232)
T ss_dssp HHH------STTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCE--ECCHHHH
T ss_pred hhc------Ccch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCe--eCCHHHH
Confidence 000 0111 112222222235788998887554432111 111 2343 7788653
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.77 E-value=0.023 Score=52.24 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=27.4
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
|+=.++.++.|||||.+.+--+..... .+.+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~---------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF---------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH---------TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---------CCCEEEEEEecc
Confidence 344578999999999776655544432 366799999975
No 111
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.59 E-value=0.033 Score=57.16 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=55.5
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 137 (590)
=.++.|+.|||||.... +.+ . ....+|++||++++..+.+.+... . ..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~-~---------~~~~lVlTpT~~aa~~l~~kl~~~----~---------~~----- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRV-N---------FEEDLILVPGRQAAEMIRRRANAS----G---------II----- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHC-C---------TTTCEEEESCHHHHHHHHHHHTTT----S---------CC-----
T ss_pred EEEEEcCCCCCHHHHHH----HHh-c---------cCCeEEEeCCHHHHHHHHHHhhhc----C---------cc-----
Confidence 36899999999997442 222 1 023699999999998888776421 0 00
Q ss_pred HHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhhhhcCchHHHHHHHHHh
Q 007774 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (590)
Q Consensus 138 ~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~gf~~~l~~il~~l 197 (590)
...+.-|.|-++++- +......-..++||+|||- |++. ..+..++..+
T Consensus 211 -----~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~s-m~~~---~~l~~l~~~~ 258 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGL-MLHT---GCVNFLVEMS 258 (446)
T ss_dssp -----CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGG-GSCH---HHHHHHHHHT
T ss_pred -----ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcc-cCCH---HHHHHHHHhC
Confidence 011123566655532 2111111247899999998 4443 3344444444
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.57 E-value=0.027 Score=51.12 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=27.4
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt 102 (590)
|+=.++.+++|||||.+.+--+.. +.. .+.+++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r-~~~--------~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRR-AKI--------AKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH-HHH--------TTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH-HHH--------CCCEEEEEEec
Confidence 455789999999999766554443 322 35679999987
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.47 E-value=0.075 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=18.2
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
+..+++.||+|+|||...-. +...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHH
Confidence 46899999999999965433 33433
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.40 E-value=0.01 Score=55.33 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=51.4
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|.-+++.+++|+|||.+.+-.+.... . .+.+++++.|...- . . ...+.... |..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~-~--------~g~kVli~~~~~d~--r-~--~~~i~srl----------G~~- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE-Y--------ADVKYLVFKPKIDT--R-S--IRNIQSRT----------GTS- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH-H--------TTCCEEEEEECCCG--G-G--CSSCCCCC----------CCS-
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH-h--------cCCEEEEEEeccCc--h-H--HHHHHHhc----------CCC-
Confidence 355678999999999976655444433 2 35668888776421 0 0 00000000 100
Q ss_pred HHHHHHhcCCCcEEEECChHHHHHHhccCCCCCCceeEEEEechhhh
Q 007774 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (590)
Q Consensus 135 ~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l 181 (590)
-..+-+.+...+++.+... ..-...++||||||+.+
T Consensus 66 ---------~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 ---------LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp ---------SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGS
T ss_pred ---------ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccC
Confidence 0123456667777766542 11235789999999963
No 115
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.15 Score=50.20 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=19.6
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
+.++++.||+|+|||.+.-. ++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 46899999999999976544 444444
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.32 E-value=0.013 Score=50.87 Aligned_cols=29 Identities=7% Similarity=0.181 Sum_probs=20.1
Q ss_pred ceeEEEEechhhhhhcCchHHHHHHHHHhc
Q 007774 169 NLRWIIFDEADRILELGFGKEIEEILDILG 198 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~gf~~~l~~il~~l~ 198 (590)
+.++|||||.+.+.+.. ...+..+++.+.
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~ 111 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFR 111 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHH
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHH
Confidence 56789999999754433 556666666654
No 117
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.29 E-value=0.19 Score=48.14 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.8
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
..+++.+|+|+|||..+-.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4699999999999976543
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.21 E-value=0.15 Score=49.15 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=34.7
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHH--HhcCCcEEEEccCcchHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~--il~g~dvlv~a~TGsGKTl~~ 73 (590)
....+|+++.-.+...+.|.+... .+.. ..+.+.. +..++.+++.||+|+|||...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~--~~~~-~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE--LPLK-HPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH--HHHH-CHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH--HHhh-CHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 345689999877888888854321 1110 1111111 234678999999999999754
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.13 E-value=0.045 Score=49.45 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=27.0
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt 102 (590)
.|+=.++.+++|||||...+-.+-... . .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~-~--------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQ-I--------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH-H--------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-H--------cCCeEEEEccc
Confidence 356679999999999954444433333 2 24669999887
No 120
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.13 E-value=0.021 Score=61.76 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=43.1
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 41 APTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 41 ~~t~~Q~~~i~~il~--g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
.+|.-|.+++..++. ..-.++.|+-|.|||.+.-+.+.. +. ..++|.+||.+-+..+++
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-----------~~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-----------GRAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-----------SCEEEECSSCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-----------hCcEEECCCHHHHHHHHH
Confidence 579999999988876 335799999999999665554443 21 126999999886655444
No 121
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.11 E-value=0.12 Score=50.97 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=27.6
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcC---CcEEEEccCcchHHHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG---RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g---~dvlv~a~TGsGKTl~~l~ 75 (590)
+...+|+++--++.+...+.+.. ..+ .-+++.+|+|+|||...-.
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l----------------~~~~~~~~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSIT----------------SKGKIPHIILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHH----------------HTTCCCSEEEECSSTTSSHHHHHHH
T ss_pred hCCCCHHHHhCcHHHHHHHHHHH----------------HcCCCCeEEEeeCcCCCCHHHHHHH
Confidence 44557777766666666654321 122 2357777899999976543
No 122
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.82 E-value=0.24 Score=51.34 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=19.8
Q ss_pred ceeEEEEechhhhhhc-CchHHHHHHHHHhc
Q 007774 169 NLRWIIFDEADRILEL-GFGKEIEEILDILG 198 (590)
Q Consensus 169 ~l~~lVlDEah~ll~~-gf~~~l~~il~~l~ 198 (590)
..++|+|||+|.+.+. .....+..++..+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~ 224 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH 224 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH
Confidence 4568999999998753 23445555555554
No 123
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.80 E-value=0.076 Score=48.70 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=26.6
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
|.=.++.++.|||||...+-- +.+... .+.+++|+.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~--------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY--------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH--------cCCceEEEEecc
Confidence 445689999999999655444 444432 346689999964
No 124
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.59 E-value=0.16 Score=50.46 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCcchHHHHHHHHHHHHHh
Q 007774 42 PTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 42 ~t~~Q~~~i~~il----~g~---dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
+.|||.+++..+. .|+ -+++.||.|+|||..... +.+.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 4688888876654 343 389999999999976654 334443
No 125
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.51 E-value=0.072 Score=49.47 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=29.0
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
.|+=.++.++.|||||.+.+--+.... ..|.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~---------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ---------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH---------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCeEEEEeecC
Confidence 355678999999999976665554443 2467799998875
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.42 E-value=0.41 Score=42.28 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.3
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
...+++.+|+|+|||.....
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 46799999999999975543
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.40 E-value=0.62 Score=42.37 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=14.5
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999654
No 128
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.33 E-value=0.22 Score=45.27 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=17.9
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
+.+++.+|+|+|||..... +...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 6899999999999975433 33433
No 129
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.25 E-value=0.13 Score=50.97 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=34.6
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHH-----hcCCcEEEEccCcchHHHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI-----LSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~i-----l~g~dvlv~a~TGsGKTl~~l~ 75 (590)
....+|+++.-.+...+.|.+...+ |. ..|.+ ...+.+++.+|+|+|||..+-.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~----~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVIL----PV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHH----HH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHH----HH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 3456899998888888888654211 11 01111 1235799999999999976543
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.21 E-value=0.095 Score=48.94 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=16.6
Q ss_pred cCCcEEEEccCcchHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l 74 (590)
.+..+++.||+|+|||...-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999997543
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.81 E-value=0.38 Score=47.92 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=30.3
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
+...+|+++--++.+.+.+.+.. +.. -....+++.||+|+|||...-
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~-~~~------------~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLS-DQP------------RDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTT-TCT------------TCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCHHHhcCCHHHHHHHHHHH-hhC------------CCCCeEEEECCCCCCHHHHHH
Confidence 34557777766777887774321 010 122349999999999996543
No 132
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.81 E-value=0.2 Score=55.65 Aligned_cols=82 Identities=11% Similarity=0.132 Sum_probs=67.9
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc-ccc
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD-VAA 397 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd-v~~ 397 (590)
+.+++|.++|...+..+++.+...... .++.+..+||+++..+|...++.+.+|..+|+|+|. .+.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~-------------~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~ 483 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK-------------FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ 483 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC-------------SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh-------------cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh
Confidence 579999999999999888888765211 167899999999999999999999999999999995 445
Q ss_pred cCCCCCCCcEEEEecC
Q 007774 398 RGLDFPKVKCIIQYDS 413 (590)
Q Consensus 398 rGlDip~v~~VI~~d~ 413 (590)
..+++.++++||.-..
T Consensus 484 ~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 484 EDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp HCCCCSCCCEEEEESC
T ss_pred hhhhccCCceEEeccc
Confidence 5688889998885444
No 133
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.60 E-value=0.72 Score=40.77 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.8
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
...+++.||+|+|||...-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 134
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.35 E-value=0.32 Score=49.92 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=35.0
Q ss_pred CceeEEEEechhhhh---hcCchHHHHHHHHHhccCCCCCCCCCCCccccCceEEEEeecccchHHHHHH
Q 007774 168 TNLRWIIFDEADRIL---ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234 (590)
Q Consensus 168 ~~l~~lVlDEah~ll---~~gf~~~l~~il~~l~~~~~~~~~~~~~~~~~~~q~il~SAT~~~~~~~l~~ 234 (590)
...+++|+|++-++- +..+...+..+...+.. ..-++.++|+........+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p---------------d~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP---------------DDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC---------------SEEEEEEEGGGGGGGHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC---------------cceEEEEeCccchHHHHHHH
Confidence 467899999998643 44456777777777643 55667788887655544444
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.28 E-value=0.42 Score=48.15 Aligned_cols=19 Identities=37% Similarity=0.244 Sum_probs=15.7
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
.+.+++.||+|+|||...-
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3569999999999997553
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.93 E-value=0.47 Score=47.68 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=16.4
Q ss_pred cCCcEEEEccCcchHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l 74 (590)
.+..+++.||+|+|||...-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 35689999999999997543
No 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.63 E-value=1.1 Score=44.91 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=18.3
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
+..+++.||+|+|||...-. +...+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~-l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF-VLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH-HHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 56799999999999975433 33443
No 138
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.55 E-value=0.27 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=17.1
Q ss_pred cEEEEccCcchHHHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
.+++.||+|+|||...-. +...+
T Consensus 46 ~~li~G~~G~GKTtl~~~-l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK-LWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHHHH-HHHHH
Confidence 799999999999975533 33443
No 139
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.27 E-value=1.1 Score=42.17 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=30.2
Q ss_pred CCccCCCCCHHHHHHHHHhCC-CCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 18 CSFSSLGLHSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 18 ~~f~~l~l~~~l~~~l~~~~g-~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
.+|+++.-.+.+.+.+.+-.. +..+..+.... +...+.+++.+|+|+|||...-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHHH
Confidence 578888766777777643110 11121111111 1234679999999999997543
No 140
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.09 E-value=0.27 Score=44.37 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=28.4
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEE
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil 99 (590)
...+++...+|.|||.+++--++..+- .|.+++|+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g---------~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG---------HGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH---------TTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEE
Confidence 347999999999999998887777763 46778888
No 141
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.05 E-value=1.1 Score=41.64 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=31.0
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
.|.-+++.+++|+|||...+-.+...+. .+..++++.-. +-..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 5677899999999999765544444432 23456776643 33455555443
No 142
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.00 E-value=0.52 Score=46.67 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=29.2
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHH----hcCCcEEEEccCcchHHHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI----LSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~i----l~g~dvlv~a~TGsGKTl~~l~ 75 (590)
+...+|+++--.+...+.+... +... -....+++.||+|+|||..+-.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~-------------l~~~~~~~~~~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVF-------------IAAAKKRNECLDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHH-------------HHHHHHTTSCCCCEEEECSTTSSHHHHHHH
T ss_pred cCCCCHHHhCChHHHHHHHHHH-------------HHHHHhcCCCCCeEEEECcCCCCHHHHHHH
Confidence 4455777775556655555321 1111 1235799999999999975433
No 143
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.89 E-value=0.69 Score=46.91 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=16.6
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
.+.+++.+|+|+|||..+-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 47899999999999975533
No 144
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.72 E-value=0.97 Score=47.32 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=31.3
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHH--HhcCCcEEEEccCcchHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~--il~g~dvlv~a~TGsGKTl~~l 74 (590)
...+|+++.=.+...+.|.+... .+.... +.+.. +...+.+++.+|+|+|||+.+-
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~--~~l~~~-~~~~~~g~~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVE--LPLRHP-ALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTH--HHHHCH-HHHHHHTCCCCCEEEEECSTTSSHHHHHH
T ss_pred CCCCHHHcCCHHHHHHHHHHHHH--HHhhCH-HHHHhcCCCCCCcEEEECcCCCCHHHHHH
Confidence 44577777655556666644321 111111 11111 1234679999999999998553
No 145
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.45 E-value=0.45 Score=47.65 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=31.2
Q ss_pred cCCccCCCCCHHHHHHHHHhCC--CCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g--~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
..+|+++.-.+...+.|.+... ...|..++. .....+.+++.+|+|+|||..+-.
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG----NRKPTSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS----SCCCCCCEEEECSTTSCHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc----CCCCCceEEEECCCCCcHHHHHHH
Confidence 4578888666666666654321 001111100 011235799999999999976543
No 146
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.30 E-value=1.4 Score=43.93 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.5
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
.+.+++.+|+|+|||..+-.
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999976543
No 147
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.02 E-value=0.32 Score=50.35 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.7
Q ss_pred cEEEEccCcchHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYL 74 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l 74 (590)
.+++.+|+|+|||...-
T Consensus 52 ~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAE 68 (447)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999997553
No 148
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.54 E-value=0.31 Score=50.88 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=39.3
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 117 (590)
.|....+.+-||||||++..-.+ +. .+..+|||+|+...|.|+++.++.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~~-----------~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-ER-----------HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-HH-----------SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-HH-----------hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 45678999999999997543322 22 12348999999999999999999874
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.13 E-value=1.5 Score=42.76 Aligned_cols=17 Identities=47% Similarity=0.698 Sum_probs=14.7
Q ss_pred cEEEEccCcchHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYL 74 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l 74 (590)
.+++.||+|+|||...-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997553
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.13 E-value=9.1 Score=34.75 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=14.0
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
No 151
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.05 E-value=0.86 Score=40.36 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHhcC--CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHH
Q 007774 42 PTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g--~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 111 (590)
..+-|..++..++.. .-.+|.++-|++||...+.-++..-. ..|..+.+|+|+..-.....+
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--------~~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--------EQGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--------HTTCCEEEECSTTHHHHHHSC
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--------hcCeEEEEEcCchHHHHHHHh
Confidence 346789999888754 34688999999999886444443322 367889999999876554433
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.96 E-value=0.66 Score=42.80 Aligned_cols=21 Identities=33% Similarity=0.505 Sum_probs=16.7
Q ss_pred cCCcEEEEccCcchHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~ 75 (590)
.|.-+++.+|+|+|||.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 466789999999999965444
No 153
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.85 E-value=1.3 Score=45.68 Aligned_cols=115 Identities=17% Similarity=0.076 Sum_probs=55.5
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|.-+++.|++|+|||...+-.+...... .+..+++++.- .-..|+...+-.......... +..|.-.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~---l~~g~l~ 266 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--------EGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNR---VRLGQLT 266 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTT---CCGGGCC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH---HhCCCCC
Confidence 34568999999999996554444443321 24457777653 223444444332221121111 1112112
Q ss_pred HHHHHH-------hcCCCcEEEE-C----ChHHHHHHhccCCCCCCceeEEEEechhhhhhc
Q 007774 135 SKEKAR-------LRKGISILVA-T----PGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (590)
Q Consensus 135 ~~~~~~-------l~~~~~IlV~-T----p~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~ 184 (590)
..++.+ +.. ..+.|- + +..+...+.... .-..+++||||..+.+...
T Consensus 267 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~--~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLV--SQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHH--HHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEcChhhcCCC
Confidence 222222 222 345553 3 333433332210 0125789999999988643
No 154
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.79 E-value=1.9 Score=44.19 Aligned_cols=40 Identities=23% Similarity=0.167 Sum_probs=24.8
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEc--CcHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV--PTRELC 106 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~--PtreLa 106 (590)
-+++.+++|+|||.+..--+ ..+.. .|.+++++. |.|.-+
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~--------~G~kVllv~~D~~R~aa 143 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK--------RGYKVGVVCSDTWRPGA 143 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT--------TTCCEEEEECCCSSTHH
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH--------CCCeEEEEeCCCcchhH
Confidence 47899999999997665433 33332 245565555 445433
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.63 E-value=1.6 Score=45.21 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=61.3
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCch
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 134 (590)
.|.-+++.|++|+|||...+-.+...... .|..++++...- -..|+...+........... +..|.-.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~E~-s~~~l~~r~~~~~~~~~~~~---l~~g~l~ 269 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSLEM-SAQQLVMRMLCAEGNINAQN---LRTGKLT 269 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEESSS-CHHHHHHHHHHHHHTCCHHH---HHTSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECCC-CHHHHHHHHHHHHcCCCHHH---HhcCCCC
Confidence 45678999999999996555444443322 244577776432 12344443321111011000 0111111
Q ss_pred HHHHHH-------hcCCCcEEEEC-----ChHHHHHHhccCCCCCCceeEEEEechhhhhhcC-----chHHHHHHHHHh
Q 007774 135 SKEKAR-------LRKGISILVAT-----PGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG-----FGKEIEEILDIL 197 (590)
Q Consensus 135 ~~~~~~-------l~~~~~IlV~T-----p~rl~~~l~~~~~~~~~~l~~lVlDEah~ll~~g-----f~~~l~~il~~l 197 (590)
..++.+ +. ..++.+-. ++.+...+.... .-.++++||||+.+.+...+ ....+..++..|
T Consensus 270 ~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~--~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~L 346 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLK--QESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSL 346 (454)
T ss_dssp HHHHHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHH--TTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 222221 22 23455543 333433332210 11367899999999887432 334555555555
Q ss_pred c
Q 007774 198 G 198 (590)
Q Consensus 198 ~ 198 (590)
.
T Consensus 347 k 347 (454)
T 2r6a_A 347 K 347 (454)
T ss_dssp H
T ss_pred H
Confidence 3
No 156
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.55 E-value=2.8 Score=40.72 Aligned_cols=28 Identities=14% Similarity=0.406 Sum_probs=19.5
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
...+++|+||||+|.. .....++..+..
T Consensus 81 ~~~kvviIdead~lt~----~a~naLLk~LEe 108 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQ----QAANAFLKALEE 108 (305)
T ss_dssp SSSEEEEETTGGGBCH----HHHHHTHHHHHS
T ss_pred CCceEEEeccHHHhCH----HHHHHHHHHHhC
Confidence 4678999999999753 344556666643
No 157
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=89.38 E-value=1.3 Score=45.00 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=66.0
Q ss_pred cCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecccc
Q 007774 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (590)
Q Consensus 317 ~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~ 396 (590)
..+.++||.++|+..+...++.+..+.. .++.+..+||+.+..++....+.+..+...|+|+|.-.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~--------------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~ 127 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD--------------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 127 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC--------------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc--------------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHH
Confidence 3467999999999999999998887531 27789999999999999999999999999999999642
Q ss_pred c----cCCCCCCCcEEEEecC
Q 007774 397 A----RGLDFPKVKCIIQYDS 413 (590)
Q Consensus 397 ~----rGlDip~v~~VI~~d~ 413 (590)
- .-++..++++||.-..
T Consensus 128 l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 128 VSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp HHHCHHHHTTCCCSEEEESCH
T ss_pred HHHHHHHhccccccEEEEeCh
Confidence 2 1255567888885433
No 158
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.27 E-value=1.5 Score=51.03 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=65.8
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEec-ccc
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-DVA 396 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaT-dv~ 396 (590)
.+.+++|.++|...+..+++.+...... .+..+..++|..+..++...++....|..+|+|+| ..+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-------------~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll 717 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-------------WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 717 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-------------TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-------------CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 3569999999999999888888754211 15678889999999999999999999999999999 556
Q ss_pred ccCCCCCCCcEEEE
Q 007774 397 ARGLDFPKVKCIIQ 410 (590)
Q Consensus 397 ~rGlDip~v~~VI~ 410 (590)
...+.+.++++||.
T Consensus 718 ~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 718 QSDVKFKDLGLLIV 731 (1151)
T ss_dssp HSCCCCSSEEEEEE
T ss_pred hCCccccccceEEE
Confidence 66688888888774
No 159
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.00 E-value=1.1 Score=51.93 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=72.3
Q ss_pred CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
...|....+..+.... ..+.++||.++|++.+..+++.+..+. . .++.+..+||+++..+|...
T Consensus 103 GSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~-~-------------~~i~v~~l~Gg~~~~er~~~ 166 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLA-D-------------EKVKIFGFYSSMKKEEKEKF 166 (1104)
T ss_dssp TCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTS-C-------------TTSCEEEECTTCCTTHHHHH
T ss_pred CCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhh-C-------------CCCeEEEEeCCCCHHHHHHH
Confidence 3456554333333322 346799999999999999999998853 1 26789999999999999999
Q ss_pred HHHhhccCccEEEecccc-----ccCCCCCCCcEEEEec
Q 007774 379 FGAFKTEKKALLLSTDVA-----ARGLDFPKVKCIIQYD 412 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~-----~rGlDip~v~~VI~~d 412 (590)
.+.+.+|..+|+|+|.-. .. +++.++++||.-.
T Consensus 167 ~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDE 204 (1104)
T 4ddu_A 167 EKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDD 204 (1104)
T ss_dssp HHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESC
T ss_pred HHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeC
Confidence 999999999999999632 22 4566888888543
No 160
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.82 E-value=0.89 Score=42.48 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=23.5
Q ss_pred ceeEEEEechhhhhh-----cCchHHHHHHHHHhcc
Q 007774 169 NLRWIIFDEADRILE-----LGFGKEIEEILDILGS 199 (590)
Q Consensus 169 ~l~~lVlDEah~ll~-----~gf~~~l~~il~~l~~ 199 (590)
+.++||+||.-.+++ ......+..++..+..
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~ 170 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE 170 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 567899999998887 4455667777777753
No 161
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.64 E-value=3.4 Score=37.57 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=55.0
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc---
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV--- 395 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv--- 395 (590)
..++||.+++++.+...++.+..+... .++..+..++|+.+..++.. .+.++...|+|+|.-
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~------------~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~ 146 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY------------MPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRIL 146 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT------------STTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh------------CCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHH
Confidence 358999999999999888887765321 23678889999988765543 345567799999952
Q ss_pred --c-ccCCCCCCCcEEEE
Q 007774 396 --A-ARGLDFPKVKCIIQ 410 (590)
Q Consensus 396 --~-~rGlDip~v~~VI~ 410 (590)
+ ...+++.++++||.
T Consensus 147 ~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 147 ALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp HHHHTTSSCCTTCCEEEE
T ss_pred HHHHhCCCCcccCCEEEE
Confidence 1 23466777887774
No 162
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.33 E-value=1.4 Score=46.52 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=31.8
Q ss_pred cccCCccCCCCCHHHHHHHHHhC---------CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERL---------GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~---------g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
+...+|+++--.+...+.|.+-+ ||..+-. ...-..+.+++.||+|+|||..+-.
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~------~~~~~~~~lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGK------DGSGVFRAAMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCT------TSTTSCSEEEEECSTTSSHHHHHHH
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCc------cCCCCCcEEEEECCCCCCHHHHHHH
Confidence 45667888876776666664321 1111000 0000235799999999999976543
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.13 E-value=2.2 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=14.8
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
.+++.||+|+|||...-.
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 499999999999965433
No 164
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.96 E-value=0.29 Score=41.81 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCcchHHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~~ 73 (590)
...+.++++.+++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999643
No 165
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.80 E-value=0.33 Score=41.51 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.2
Q ss_pred hcCCcEEEEccCcchHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~ 73 (590)
..+.++++.+++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46678999999999999755
No 166
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.05 E-value=1.2 Score=41.29 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=19.1
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
.|.-+++.+|+|+|||......+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4667899999999999766554443
No 167
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=86.52 E-value=4.4 Score=36.32 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=58.6
Q ss_pred ChHH-HHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 301 SRLA-VLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 301 ~k~~-~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
.|.. .+..++........+.++||.++++..+...++.+...... .++..+..++|+.+..+....
T Consensus 52 GKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~- 118 (206)
T 1vec_A 52 GKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKH------------MGGAKVMATTGGTNLRDDIMR- 118 (206)
T ss_dssp TTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTT------------SSSCCEEEECSSSCHHHHHHH-
T ss_pred chHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhh------------cCCceEEEEeCCccHHHHHHh-
Confidence 4443 33344443322234568999999999999888888765321 236678889998876544322
Q ss_pred HHhhccCccEEEeccc-----ccc-CCCCCCCcEEEE
Q 007774 380 GAFKTEKKALLLSTDV-----AAR-GLDFPKVKCIIQ 410 (590)
Q Consensus 380 ~~F~~~~~~vLiaTdv-----~~r-GlDip~v~~VI~ 410 (590)
+ .+...|+|+|.- +.+ .+++.++++||.
T Consensus 119 --~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 119 --L-DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp --T-TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred --c-CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 2 346789999962 223 345667777664
No 168
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=86.37 E-value=2.5 Score=39.16 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=46.4
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc---
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD--- 394 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd--- 394 (590)
.+.++||.+++++.+..+++.+..+... .+..+..++|+.+... ..+.+..+...|+|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l 160 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY-------------MGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRV 160 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-------------TTCCEEEECC----------------CCCSEEEECHHHH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh-------------cCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHH
Confidence 4569999999999999998888775321 1456677778765432 23445566789999993
Q ss_pred --ccccC-CCCCCCcEEEE
Q 007774 395 --VAARG-LDFPKVKCIIQ 410 (590)
Q Consensus 395 --v~~rG-lDip~v~~VI~ 410 (590)
.+.++ +++.++++||.
T Consensus 161 ~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 161 FDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp HHHHHTTSSCSTTCCEEEE
T ss_pred HHHHHhCCcCcccCcEEEE
Confidence 33333 56667777764
No 169
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.23 E-value=0.28 Score=50.32 Aligned_cols=57 Identities=23% Similarity=0.319 Sum_probs=38.4
Q ss_pred ccCCccCCCCCHHHHHHHHHhC--CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~--g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
...+|++.+--+...+.|.+.. .+..|--++...++ -.+.+|+.||+|+|||+.+-.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllAkA 234 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLARA 234 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHHHH
Confidence 3458999988888888886532 23344444443332 247899999999999976433
No 170
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.01 E-value=3 Score=38.38 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=61.4
Q ss_pred CChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 300 ~~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
..|... +..++........+.++||.+++++.+...++.+..+... .++..+..++|+.+..++...
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIK------------MEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT------------STTCCEEEECTTSCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcc------------cCCceEEEEeCCCCHHHHHHh
Confidence 455543 4444444433334579999999999999998888775321 126778889999887665443
Q ss_pred HHHhhccCccEEEecccc------ccCCCCCCCcEEEE
Q 007774 379 FGAFKTEKKALLLSTDVA------ARGLDFPKVKCIIQ 410 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~------~rGlDip~v~~VI~ 410 (590)
+ ....|+|+|.-. ...+++.++++||.
T Consensus 140 ~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 140 L-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp T-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred c-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 3 257899999631 23355666766663
No 171
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.68 E-value=3.8 Score=38.32 Aligned_cols=94 Identities=13% Similarity=0.198 Sum_probs=59.8
Q ss_pred CChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 300 ~~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
..|... +..++........+.++||.+++++.+...++.+..+.. ..+..+..++|+.+..++...
T Consensus 91 sGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~-------------~~~~~~~~~~g~~~~~~~~~~ 157 (249)
T 3ber_A 91 SGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS-------------SIGVQSAVIVGGIDSMSQSLA 157 (249)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHG-------------GGTCCEEEECTTSCHHHHHHH
T ss_pred CCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhc-------------cCCeeEEEEECCCChHHHHHH
Confidence 345433 333443333323456899999999999888887766521 125678889999876554433
Q ss_pred HHHhhccCccEEEeccc-----cc--cCCCCCCCcEEEE
Q 007774 379 FGAFKTEKKALLLSTDV-----AA--RGLDFPKVKCIIQ 410 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv-----~~--rGlDip~v~~VI~ 410 (590)
+ .+...|+|+|.- +. .++++.++++||.
T Consensus 158 ~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 158 L----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp H----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred h----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 3 246789999952 21 3567777777764
No 172
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.56 E-value=2.3 Score=38.69 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=18.2
Q ss_pred cCCcEEEEccCcchHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPII 78 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil 78 (590)
.|.-+++.+++|+|||......+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999976554443
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.41 E-value=13 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.7
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
.+++.||+|+|||...-.
T Consensus 40 ~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999976533
No 174
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.24 E-value=27 Score=33.85 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=14.6
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
..++|.|+.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999643
No 175
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.94 E-value=1.6 Score=53.05 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=33.7
Q ss_pred HHHHhc------CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 50 IPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 50 i~~il~------g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
+..++. ++.+++.+|+|+|||..+...+.+... .|.+++++.....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEcccc
Confidence 556665 689999999999999877666655442 3567888886643
No 176
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=84.69 E-value=1.2 Score=47.23 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.1
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999654
No 177
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=84.01 E-value=4.4 Score=37.31 Aligned_cols=75 Identities=7% Similarity=0.074 Sum_probs=50.5
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc--
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-- 395 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv-- 395 (590)
.+.++||.+++++.+...++.+..+... .+..+..++|+.+.......+ +..+|+|+|.-
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l 157 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKN-------------HDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRL 157 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT-------------SSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCC-------------CCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHH
Confidence 3568999999999999988888776321 256788899988765544333 46789999952
Q ss_pred ---ccc--CCCCCCCcEEEE
Q 007774 396 ---AAR--GLDFPKVKCIIQ 410 (590)
Q Consensus 396 ---~~r--GlDip~v~~VI~ 410 (590)
+.+ .+++.++++||.
T Consensus 158 ~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 158 LQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp HHHHHHCSSCCCTTCCEEEE
T ss_pred HHHHHhcCCcccccccEEEE
Confidence 122 356667776664
No 178
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.63 E-value=7.8 Score=34.60 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=59.5
Q ss_pred CCChHHH-HHHHHHhhhc---ccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHH
Q 007774 299 CGSRLAV-LLSILKHLFD---TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (590)
Q Consensus 299 ~~~k~~~-L~~~l~~~~~---~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~ 374 (590)
...|... +..++..... ...+.+++|.++++..+...++.+.... +...+..++|+.+...
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 112 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA---------------PHLKVVAVYGGTGYGK 112 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC---------------TTSCEEEECSSSCSHH
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh---------------hcceEEEEECCCChHH
Confidence 3456554 3334443321 1245689999999999999888887752 2467788899887655
Q ss_pred HHHHHHHhhccCccEEEeccc-----cc-cCCCCCCCcEEEE
Q 007774 375 RRTTFGAFKTEKKALLLSTDV-----AA-RGLDFPKVKCIIQ 410 (590)
Q Consensus 375 R~~~~~~F~~~~~~vLiaTdv-----~~-rGlDip~v~~VI~ 410 (590)
....+. ....|+|+|.- +. ..+++.++++||.
T Consensus 113 ~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 113 QKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp HHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred HHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 443332 35789999952 22 2456677777774
No 179
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.57 E-value=3.4 Score=37.73 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=55.4
Q ss_pred CCChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHH
Q 007774 299 CGSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (590)
Q Consensus 299 ~~~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~ 377 (590)
...|... +..++........+.++||.++++..+..+++.+..+... .+..+..++|+.+..++..
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~ 127 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH-------------MDIKVHACIGGTSFVEDAE 127 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------SCCCEEEECC---------
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcc-------------cCceEEEEeCCcchHHHHh
Confidence 3466654 4455554433334569999999999999888888765321 2567888899876554433
Q ss_pred HHHHhhccCccEEEecccc------ccCCCCCCCcEEEE
Q 007774 378 TFGAFKTEKKALLLSTDVA------ARGLDFPKVKCIIQ 410 (590)
Q Consensus 378 ~~~~F~~~~~~vLiaTdv~------~rGlDip~v~~VI~ 410 (590)
. +. ..+|+|+|.-. ...+++.++++||.
T Consensus 128 ~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 128 G---LR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp ----CT--TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred c---CC--CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 2 22 37899999532 23456667777774
No 180
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.96 E-value=5.1 Score=37.15 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=54.0
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc---
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD--- 394 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd--- 394 (590)
.+.++||.++|++.+..+++.+..+.. ..+..+..++|+.+...+...+.. ..+|+|+|.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~-------------~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l 163 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCR-------------ACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRL 163 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHH-------------HTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHh-------------hcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHH
Confidence 356799999999999988887776521 126778889999887766554432 478999995
Q ss_pred --cccc-CCCCCCCcEEEE
Q 007774 395 --VAAR-GLDFPKVKCIIQ 410 (590)
Q Consensus 395 --v~~r-GlDip~v~~VI~ 410 (590)
.+.+ .+++.++++||.
T Consensus 164 ~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 164 IDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp HHHHHHTSCCCTTCCEEEE
T ss_pred HHHHHcCCCCcccccEEEE
Confidence 2322 356777887774
No 181
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.57 E-value=0.4 Score=48.56 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=36.3
Q ss_pred ccCCccCCCCCHHHHHHHHHhC--CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~--g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
...+|++.+=-+...+.|.+.. .+..|--++...+ -..+.+|+.||+|+|||+.+-.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLARA 201 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHHHH
Confidence 3468999976677777775532 2233333333222 2247899999999999976533
No 182
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.57 E-value=3.2 Score=41.93 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=14.5
Q ss_pred CcEEE--EccCcchHHHHHH
Q 007774 57 RHVLV--NAATGTGKTVAYL 74 (590)
Q Consensus 57 ~dvlv--~a~TGsGKTl~~l 74 (590)
..+++ .|++|+|||...-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 46788 9999999997543
No 183
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.84 E-value=0.9 Score=46.81 Aligned_cols=44 Identities=32% Similarity=0.431 Sum_probs=32.4
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~ 107 (590)
...+++|.|+||||||... .+++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 4578999999999999864 344444433 2567889999988853
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=81.68 E-value=5.4 Score=39.31 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=30.2
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
.|.=+++.|++|+|||...+-.+..... .+..+++++.- .-..|+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCC-CCHHHHHHHH
Confidence 4556899999999999655444444332 24567777653 3344555444
No 185
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.42 E-value=6.9 Score=35.73 Aligned_cols=75 Identities=8% Similarity=0.152 Sum_probs=48.8
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc--
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-- 395 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv-- 395 (590)
.+.++||.++|++.+..+++.+..+.. .+..+..++|+.+...+...+ . ...+|+|+|.-
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l 154 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSY--------------KGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRL 154 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCC--------------TTCCEEEECC------CHHHH---H-SCCSEEEECHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcc--------------cCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHH
Confidence 456899999999999999988887632 266788888887665444333 2 34789999952
Q ss_pred ----cccCCCCCCCcEEEE
Q 007774 396 ----AARGLDFPKVKCIIQ 410 (590)
Q Consensus 396 ----~~rGlDip~v~~VI~ 410 (590)
....+++.++++||.
T Consensus 155 ~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 155 NDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp HHHHHTTCCCCTTCCEEEE
T ss_pred HHHHHcCCcCcccceEEEE
Confidence 123456777777764
No 186
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=81.39 E-value=9.1 Score=35.97 Aligned_cols=76 Identities=9% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc---
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD--- 394 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd--- 394 (590)
.+.++||.++|++.+...++.++.+... .+..+..+.|+......... +.. ...|+|+|.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~---~~~-~~~Iiv~Tp~~l 187 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTH-------------HVHTYGLIMGGSNRSAEAQK---LGN-GINIIVATPGRL 187 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT-------------CCSCEEEECSSSCHHHHHHH---HHH-CCSEEEECHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhh-------------cCceEEEEECCCCHHHHHHH---hcC-CCCEEEEcHHHH
Confidence 3568999999999999998888876322 15567778888766544333 333 378999994
Q ss_pred --ccc--cCCCCCCCcEEEE
Q 007774 395 --VAA--RGLDFPKVKCIIQ 410 (590)
Q Consensus 395 --v~~--rGlDip~v~~VI~ 410 (590)
.+. .++++.++++||.
T Consensus 188 ~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 188 LDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp HHHHHHCTTCCCTTCCEEEE
T ss_pred HHHHHccCCcccccCCEEEE
Confidence 222 2467777887764
No 187
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=81.19 E-value=9.5 Score=37.91 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=63.0
Q ss_pred CChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 300 ~~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
..|... +..++........+.++||.+++...+..+++.+..+... .++..+..++|+.+..+....
T Consensus 56 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~ 123 (391)
T 1xti_A 56 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY------------MPNVKVAVFFGGLSIKKDEEV 123 (391)
T ss_dssp SSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT------------CTTCCEEEECTTSCHHHHHHH
T ss_pred CcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhh------------CCCeEEEEEeCCCCHHHHHHH
Confidence 345443 3333333322233568999999999999888887765321 236788899999887655443
Q ss_pred HHHhhccCccEEEecccc------ccCCCCCCCcEEEE
Q 007774 379 FGAFKTEKKALLLSTDVA------ARGLDFPKVKCIIQ 410 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~------~rGlDip~v~~VI~ 410 (590)
+..+..+|+|+|.-. ...+++.++++||.
T Consensus 124 ---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 124 ---LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp ---HHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred ---HhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 445678999999532 23467788888884
No 188
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=80.71 E-value=1 Score=44.94 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 445567876 688999999999875
No 189
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.28 E-value=2.5 Score=41.15 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.9
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
++++++.||+|+|||.....
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999976544
No 190
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=80.24 E-value=17 Score=32.29 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=48.9
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhc-CCCcEEEECChHHHHHHhccCCCCCC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
+.++||.+++++-+..+++.+... .+.+..+.|+....... +.++ ...+|+|+| +.+. ..+++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~--~Gldi~ 121 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS--KGLDFP 121 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH--TTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh--cCCCcc
Confidence 346999999999999999888764 24456677776544332 2333 458999999 2222 456777
Q ss_pred ceeEEEE
Q 007774 169 NLRWIIF 175 (590)
Q Consensus 169 ~l~~lVl 175 (590)
+++++|.
T Consensus 122 ~v~~VI~ 128 (191)
T 2p6n_A 122 AIQHVIN 128 (191)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 8888876
No 191
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.29 E-value=1.1 Score=43.68 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=34.0
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEccCcchHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~~l 74 (590)
...+|++++-.+.+.+.|.+... .|..+....... +..++.+++.||+|+|||..+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 45689999777777777754311 111111111111 2346789999999999997553
No 192
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=79.07 E-value=3.6 Score=39.81 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=58.5
Q ss_pred CChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 300 ~~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
..|..+ ++.++..........++||.++|++.+..++..+..+... +++..+..++|+.....+.
T Consensus 142 sGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~-- 207 (300)
T 3fmo_B 142 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF------------YPELKLAYAVRGNKLERGQ-- 207 (300)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT------------STTCCEEEESTTCCCCTTC--
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhh------------CCCcEEEEEeCCccHhhhh--
Confidence 455443 4455555443334458999999999999988888776321 2356677777766543221
Q ss_pred HHHhhccCccEEEecccc------c-cCCCCCCCcEEEE
Q 007774 379 FGAFKTEKKALLLSTDVA------A-RGLDFPKVKCIIQ 410 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~------~-rGlDip~v~~VI~ 410 (590)
.....|+|||.-. . ..+++.++.+||.
T Consensus 208 -----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 208 -----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp -----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred -----cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 3456899999632 1 3567778888774
No 193
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=79.03 E-value=1.3 Score=43.47 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=19.0
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344567876 688999999999875
No 194
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=78.91 E-value=1.5 Score=42.67 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=28.2
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL 105 (590)
-+++.+|+|+|||...+-.+.+.... ..+..++++.....+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-------g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-------YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-------CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEeccchh
Confidence 57999999999997665555544322 235678888776554
No 195
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.66 E-value=0.91 Score=46.67 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=35.9
Q ss_pred cCCccCCCCCHHHHHHHHHhC--CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~--g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
..+|++.+--+.+.+.|.+.. .+..|-.++... +--.+.+|+.+|+|+|||+.+-.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHHH
Confidence 468999987777888886542 122222222221 12357899999999999975533
No 196
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=78.59 E-value=1.2 Score=43.98 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEccCcchHHHHH
Q 007774 51 PVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 51 ~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
..++.|.| ++..++||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 44567876 588999999999875
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.44 E-value=0.84 Score=46.85 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=35.2
Q ss_pred ccCCccCCCCCHHHHHHHHHhC--CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~--g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
...+|++.+--+...+.|.+.. .+..|--++...+ --.+.+|+.||+|+|||+.+-.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHHHH
Confidence 3458999976666676665431 2223333332221 2347899999999999986543
No 198
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=78.35 E-value=1.3 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAYL 74 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~l 74 (590)
+..++.|.| ++..++||||||.+..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEee
Confidence 344567876 5889999999998753
No 199
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=78.03 E-value=1.4 Score=43.70 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=20.9
Q ss_pred HHHHHhcCCc--EEEEccCcchHHHHHH
Q 007774 49 AIPVILSGRH--VLVNAATGTGKTVAYL 74 (590)
Q Consensus 49 ~i~~il~g~d--vlv~a~TGsGKTl~~l 74 (590)
.+..++.|.| ++..++||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5566778887 5889999999998763
No 200
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.82 E-value=1.4 Score=44.72 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=20.7
Q ss_pred HHHHHhcCCc--EEEEccCcchHHHHHH
Q 007774 49 AIPVILSGRH--VLVNAATGTGKTVAYL 74 (590)
Q Consensus 49 ~i~~il~g~d--vlv~a~TGsGKTl~~l 74 (590)
.+..++.|.| ++..++||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4566678887 5889999999998763
No 201
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=77.80 E-value=1.5 Score=43.52 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=18.2
Q ss_pred HHHhcCCc--EEEEccCcchHHHHH
Q 007774 51 PVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 51 ~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
..++.|.| ++..++||||||.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34567876 588999999999875
No 202
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=77.64 E-value=1.5 Score=43.77 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEccCcchHHHHH
Q 007774 51 PVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 51 ~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
..++.|.| ++..++||||||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 44567876 588999999999875
No 203
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=77.18 E-value=1.3 Score=43.94 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEEccCcchHHHHHH
Q 007774 49 AIPVILSGRH--VLVNAATGTGKTVAYL 74 (590)
Q Consensus 49 ~i~~il~g~d--vlv~a~TGsGKTl~~l 74 (590)
.+..++.|.| ++..++||||||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4455667877 5889999999998763
No 204
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=77.14 E-value=1.6 Score=43.44 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEccCcchHHHHH
Q 007774 51 PVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 51 ~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
..++.|.| ++..++||||||.+.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34567876 588999999999875
No 205
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=77.08 E-value=1.6 Score=42.91 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=20.2
Q ss_pred HHHHHhcCCc--EEEEccCcchHHHHH
Q 007774 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 49 ~i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
.+..++.|.| ++..++||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556678887 588999999999875
No 206
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=77.08 E-value=1.5 Score=43.84 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344567876 588999999999875
No 207
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=77.00 E-value=1.6 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 444567876 588999999999765
No 208
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=76.99 E-value=1.6 Score=43.22 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 344567876 588999999999875
No 209
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=76.93 E-value=16 Score=31.29 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=49.8
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhcC-CCcEEEECChHHHHHHhccCCCCCC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLRK-GISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
+.++||.++|+.-+..+++.+... ...+..++|+....... +.++. ..+|+|+|. .+. ..+++.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~ 102 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIE 102 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchh
Confidence 456999999999999999888764 34566777776544332 33333 478999992 222 456777
Q ss_pred ceeEEEEec
Q 007774 169 NLRWIIFDE 177 (590)
Q Consensus 169 ~l~~lVlDE 177 (590)
.++++|.-.
T Consensus 103 ~~~~Vi~~~ 111 (163)
T 2hjv_A 103 NISLVINYD 111 (163)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888888643
No 210
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=76.90 E-value=1.6 Score=43.39 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=18.4
Q ss_pred HHHhcCCc--EEEEccCcchHHHHH
Q 007774 51 PVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 51 ~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
..++.|.| ++..++||||||.+.
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 44567876 588999999999875
No 211
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=76.86 E-value=1.6 Score=43.55 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=18.9
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 445567877 588899999999875
No 212
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.85 E-value=0.94 Score=46.11 Aligned_cols=57 Identities=26% Similarity=0.379 Sum_probs=36.3
Q ss_pred ccCCccCCCCCHHHHHHHHHh--CCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRER--LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~--~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
...+|++.+=-+...+.|.+. +.+..|--++...++ -.+.+|+.+|+|+|||+.+-.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLAkA 235 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLAKA 235 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHHHH
Confidence 345899997556666666543 233344444433322 246799999999999985533
No 213
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=76.69 E-value=1.6 Score=43.35 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 344567876 588999999999876
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.66 E-value=2.5 Score=46.94 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=15.1
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
.+++.||||+|||..+-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 499999999999976543
No 215
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=76.62 E-value=1.5 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344567876 588999999999765
No 216
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=76.52 E-value=1.6 Score=43.43 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 445567887 588999999999876
No 217
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=76.40 E-value=1.6 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=19.4
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAYL 74 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~l 74 (590)
+..++.|.| ++..++||||||.+..
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEec
Confidence 344567876 6889999999998753
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.36 E-value=1.1 Score=45.73 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=34.5
Q ss_pred cCCccCCCCCHHHHHHHHHhC--CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~--g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
..+|++.+=-+...+.|.+.. .+..|--++...+ --.+.+|+.||+|+|||+.+-.
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHHHH
Confidence 458999976666776665431 2222333332222 2346799999999999976543
No 219
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=76.07 E-value=12 Score=37.20 Aligned_cols=92 Identities=10% Similarity=0.116 Sum_probs=59.9
Q ss_pred ChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 301 SRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 301 ~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
.|... +..++........+.++||.+++...+...++.+...... .+..+..++|+.+..+....+
T Consensus 70 GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~ 136 (394)
T 1fuu_A 70 GKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH-------------MDIKVHACIGGTSFVEDAEGL 136 (394)
T ss_dssp HHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------SCCCEEEECSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhcc-------------CCeeEEEEeCCCchHHHHhhc
Confidence 34433 3334443332234569999999999999888887765321 256788899998876655544
Q ss_pred HHhhccCccEEEecccc------ccCCCCCCCcEEEE
Q 007774 380 GAFKTEKKALLLSTDVA------ARGLDFPKVKCIIQ 410 (590)
Q Consensus 380 ~~F~~~~~~vLiaTdv~------~rGlDip~v~~VI~ 410 (590)
. ...|+|+|.-. ...+++.++++||.
T Consensus 137 ~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 137 R-----DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp H-----HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred C-----CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 3 46799998421 22455667888774
No 220
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=75.79 E-value=3 Score=43.64 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=25.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHH
Q 007774 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 38 g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
.+.--...=..++-.+..+.++++.||+|+|||..+
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 343334444455556677899999999999999643
No 221
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=75.75 E-value=1.6 Score=43.66 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=18.1
Q ss_pred HHHhcCCc--EEEEccCcchHHHHH
Q 007774 51 PVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 51 ~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
..++.|.| ++..++||||||.+.
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 34567876 588999999999765
No 222
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.60 E-value=1.7 Score=44.23 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEEccCcchHHHHH
Q 007774 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 49 ~i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
.+..++.|.| ++..++||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4566678887 588999999999875
No 223
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.50 E-value=8.7 Score=35.72 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=52.0
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecccc--
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA-- 396 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~-- 396 (590)
+.++||.++|++.+..+++.+..+... .+..+..++|+.+.......+ ....+|+|+|.-.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~ 162 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLN-------------TPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLV 162 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTT-------------SSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcc-------------CCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHH
Confidence 358999999999999988888765321 256677888988765543332 2467899999631
Q ss_pred ----ccCCCCCCCcEEEE
Q 007774 397 ----ARGLDFPKVKCIIQ 410 (590)
Q Consensus 397 ----~rGlDip~v~~VI~ 410 (590)
...+++.++++||.
T Consensus 163 ~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 163 DFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp HHHHTTSBCCTTCCEEEE
T ss_pred HHHHcCCCChhhCCEEEE
Confidence 22356777887774
No 224
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=75.40 E-value=1.5 Score=43.78 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCcchHHHHH
Q 007774 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 49 ~i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
.+..++.|.| ++..++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556678887 578899999999875
No 225
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=75.28 E-value=5.3 Score=44.95 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.0
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
..++++.||+|+|||...-.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 34799999999999975443
No 226
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.03 E-value=0.87 Score=44.81 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=32.8
Q ss_pred ccCCccCCCCCHHHHHHHHHhCC--CCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g--~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
...+|++++-.+.+.+.|.+... ...|..++ ......+.+++.||+|+|||..+-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHHH
Confidence 35689999877777777754210 11111111 001123679999999999997553
No 227
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=74.62 E-value=2 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=18.4
Q ss_pred HHHhcCCc--EEEEccCcchHHHHH
Q 007774 51 PVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 51 ~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
..++.|.| ++..++||||||.+.
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34467876 588999999999876
No 228
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=74.45 E-value=1.8 Score=43.56 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=22.8
Q ss_pred CcHHHHHHHH--------HHhcCCc--EEEEccCcchHHHHH
Q 007774 42 PTKVQAQAIP--------VILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 42 ~t~~Q~~~i~--------~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..-|.+.+. .++.|.| ++..++||||||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4445665543 3567776 588999999999875
No 229
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=74.41 E-value=1.8 Score=43.31 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=18.9
Q ss_pred HHHHhcCCc--EEEEccCcchHHHHH
Q 007774 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
+..++.|.| ++..++||||||.+.
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 445567876 588999999999775
No 230
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=74.38 E-value=23 Score=30.23 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=49.2
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhc-CCCcEEEECChHHHHHHhccCCCCCC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
+.++||.++|++-+..+++.+... ...+..++|+....... +.++ ...+|+|+|. .+. ..+++.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~ 97 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQ 97 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCcc
Confidence 457999999999999988888753 34556677776544332 3333 3488999992 222 456677
Q ss_pred ceeEEEEec
Q 007774 169 NLRWIIFDE 177 (590)
Q Consensus 169 ~l~~lVlDE 177 (590)
.++++|.-.
T Consensus 98 ~~~~Vi~~~ 106 (165)
T 1fuk_A 98 QVSLVINYD 106 (165)
T ss_dssp SCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888887643
No 231
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=74.20 E-value=27 Score=30.14 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=49.4
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhcC-CCcEEEECChHHHHHHhccCCCCCC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLRK-GISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
+.++||.++++.-+..+++.+... ...+..++|+....... +.++. ..+|+|+|. .+ ...+++.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~--~~Gid~~ 101 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC--ARGIDVK 101 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC--CTTTCCT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch--hcCCCcc
Confidence 467999999999999988888753 34566777776544332 33333 489999993 11 2456778
Q ss_pred ceeEEEE
Q 007774 169 NLRWIIF 175 (590)
Q Consensus 169 ~l~~lVl 175 (590)
.++++|.
T Consensus 102 ~~~~Vi~ 108 (175)
T 2rb4_A 102 QVTIVVN 108 (175)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 8888885
No 232
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=73.67 E-value=2.4 Score=39.41 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=30.6
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 114 (590)
.|.-+++.|++|+|||...+-.+.+.... .+..+++++-. +-..|+.+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeeccc-CCHHHHHHHHH
Confidence 35678999999999997655545544332 23446666543 33444444443
No 233
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=73.57 E-value=20 Score=34.93 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=61.6
Q ss_pred CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
...|.......+........+.++||.+++...+..+++.+...... .+..+..++|+....+....
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~ 120 (367)
T 1hv8_A 54 GSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN-------------KNLKIAKIYGGKAIYPQIKA 120 (367)
T ss_dssp SSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS-------------SCCCEEEECTTSCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC-------------CCceEEEEECCcchHHHHhh
Confidence 45666554444444333334679999999999999888888765321 25678888998876555443
Q ss_pred HHHhhccCccEEEecccc------ccCCCCCCCcEEEE
Q 007774 379 FGAFKTEKKALLLSTDVA------ARGLDFPKVKCIIQ 410 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv~------~rGlDip~v~~VI~ 410 (590)
+. ..+|+|+|.-. ...+++.++++||.
T Consensus 121 ~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 121 LK-----NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp HH-----TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred cC-----CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 32 57899999531 22356778888774
No 234
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.56 E-value=4.2 Score=41.41 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=22.3
Q ss_pred HHHHHHHHHh--cCCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 45 VQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 45 ~Q~~~i~~il--~g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
-+...+..++ .|.-+++.+|||||||... -.++..+
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l 191 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 191 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhc
Confidence 3444554443 3456899999999999643 3344444
No 235
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=73.48 E-value=36 Score=35.77 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhc-
Q 007774 67 TGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR- 142 (590)
Q Consensus 67 sGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~- 142 (590)
..+....+-.+...+... ..+.++||.|+|+.-|..+++.+..... ....+..++|+....... +.++
T Consensus 319 ~~~~~~~~~~l~~~~~~~------~~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~ 390 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKER------DSNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKK 390 (563)
T ss_dssp THHHHHHHHHHHHHHHHT------TTCCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc------CCCCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhc
Confidence 344444444444444331 2456899999999999999999987643 134566677776554332 2233
Q ss_pred CCCcEEEECChHHHHHHhccCCCCCCceeEEEEec
Q 007774 143 KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (590)
Q Consensus 143 ~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 177 (590)
...+|+|||. .+. ..+++.++++||.-.
T Consensus 391 g~~~vLvaT~-----~~~--~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 391 DESGILVCTD-----VGA--RGMDFPNVHEVLQIG 418 (563)
T ss_dssp CSSEEEEECG-----GGT--SSCCCTTCCEEEEES
T ss_pred CCCCEEEEcc-----hhh--cCCCcccCCEEEEEC
Confidence 4589999993 222 467778898888654
No 236
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=73.36 E-value=16 Score=36.39 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=59.9
Q ss_pred CChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 300 ~~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
..|... +..++........+.+++|.+++...+..+++.+..+... .+..+..++|+....+....
T Consensus 69 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~ 135 (400)
T 1s2m_A 69 TGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-------------CGISCMVTTGGTNLRDDILR 135 (400)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------TTCCEEEECSSSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcc-------------cCceEEEEeCCcchHHHHHH
Confidence 345543 3333333322224568999999999999888888765321 15678888998776543222
Q ss_pred HHHhhccCccEEEecc-----cccc-CCCCCCCcEEEEe
Q 007774 379 FGAFKTEKKALLLSTD-----VAAR-GLDFPKVKCIIQY 411 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTd-----v~~r-GlDip~v~~VI~~ 411 (590)
..+...|+|+|. .+.+ ..++.++++||.-
T Consensus 136 ----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 136 ----LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp ----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred ----hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 235678999994 2333 3567788888753
No 237
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.35 E-value=2 Score=40.66 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.3
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.+..+++.+++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999644
No 238
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=73.17 E-value=6.6 Score=41.37 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=52.4
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD 394 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd 394 (590)
.+.+||.+++...+......+... ++.+..+||..+..++..+...+..+..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~-----------------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN-----------------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc-----------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 468999999999998888888776 77888999999999999999999999999999885
No 239
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=73.09 E-value=3.8 Score=40.80 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.0
Q ss_pred cCCcEEEEccCcchHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~ 75 (590)
.+..+++.+|+|+|||..+-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999985533
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.06 E-value=2.1 Score=42.03 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=19.1
Q ss_pred HHHHhcCCcEEEEccCcchHHHHH
Q 007774 50 IPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 50 i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
.-.+..+.++++.||+|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 344456889999999999999654
No 241
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=72.97 E-value=14 Score=37.76 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=54.2
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc----
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD---- 394 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd---- 394 (590)
+.++||.++|++.+..+++.+..+... .+..+..++|+.+..++...+ .....|+|+|.
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~-------------~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~ 191 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFE-------------SYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLL 191 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTT-------------SSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhcc-------------CCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHH
Confidence 458999999999999999888776322 256778889998876554333 23678999995
Q ss_pred -ccccC-CCCCCCcEEEE
Q 007774 395 -VAARG-LDFPKVKCIIQ 410 (590)
Q Consensus 395 -v~~rG-lDip~v~~VI~ 410 (590)
.+.+| +++.++++||.
T Consensus 192 ~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 192 DFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp HHHHTTSCCCTTCCEEEE
T ss_pred HHHHhCCcccccCCeEEE
Confidence 23343 56778888884
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=72.75 E-value=18 Score=36.43 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=17.5
Q ss_pred CCcEEEEccCcchHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
|.-+.|.+|+|+|||......++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 356899999999999655543333
No 243
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=72.67 E-value=19 Score=36.02 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=60.5
Q ss_pred CChHHHH-HHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 300 GSRLAVL-LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 300 ~~k~~~L-~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
..|.... ..++........+.++||.++++..+..+++.+..+... .+..+..++|+.+..+....
T Consensus 85 sGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~ 151 (410)
T 2j0s_A 85 TGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY-------------MNVQCHACIGGTNVGEDIRK 151 (410)
T ss_dssp SSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhcc-------------CCeEEEEEECCCCHHHHHHH
Confidence 3555433 333333222234679999999999999988888765321 25677888898877655443
Q ss_pred HHHhhccCccEEEecc-----cccc-CCCCCCCcEEEE
Q 007774 379 FGAFKTEKKALLLSTD-----VAAR-GLDFPKVKCIIQ 410 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTd-----v~~r-GlDip~v~~VI~ 410 (590)
+. ....|+|+|. .+.+ .+++..+++||.
T Consensus 152 ~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 152 LD----YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp HH----HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred hh----cCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 32 3468999994 3334 466777888774
No 244
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=72.65 E-value=0.67 Score=44.50 Aligned_cols=54 Identities=17% Similarity=0.347 Sum_probs=27.7
Q ss_pred ccCCccCCCCCHHHHHHHHHhCCCCCCcHHHH-HHHHHH--hcCCcEEEEccCcchHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQA-QAIPVI--LSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~-~~i~~i--l~g~dvlv~a~TGsGKTl~~ 73 (590)
...+|++++--+.+.+.|.+.. ..|+.. ..+..+ .-.+.+++.+|+|+|||...
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i----~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI----LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHH----THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH----HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 4568999987777887775432 112211 122221 11244999999999999644
No 245
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=72.60 E-value=2.2 Score=42.46 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=16.4
Q ss_pred cCCc--EEEEccCcchHHHHHH
Q 007774 55 SGRH--VLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~d--vlv~a~TGsGKTl~~l 74 (590)
.|.+ ++..++||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 5999999999998763
No 246
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=72.28 E-value=24 Score=31.84 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=49.1
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhcC-CCcEEEECChHHHHHHhccCCCCCC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLRK-GISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
+.++||.+||+.-+..+++.+... ...+..++|+....... ..++. ..+|+|+|. .+. ..+++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~ 98 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIP 98 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCc
Confidence 457999999999999998888764 24456677776544332 33344 488999992 222 456777
Q ss_pred ceeEEEE
Q 007774 169 NLRWIIF 175 (590)
Q Consensus 169 ~l~~lVl 175 (590)
+++++|.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888774
No 247
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=72.21 E-value=6.9 Score=41.89 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=51.7
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHh--hccCccEEEecc
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF--KTEKKALLLSTD 394 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F--~~~~~~vLiaTd 394 (590)
.+.+||.+++...+......|... ++.+..++|+++..++..+...+ ..+...|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~-----------------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL-----------------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH-----------------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc-----------------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 469999999999999888888776 77889999999999998888888 467889999997
No 248
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=72.13 E-value=3.1 Score=42.00 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=29.1
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL 105 (590)
.+.++++.++||||||...-..+.+.. . .+..++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~--------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M--------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T--------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H--------CCCEEEEEeCCcCH
Confidence 567899999999999975544333332 2 35568888887663
No 249
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=71.80 E-value=3.9 Score=49.13 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=56.1
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~ 135 (590)
|+-+.+.+|.|||||...+..+.+.-. .|..++++.+-.+|.... ++.+. .+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~---------~g~~~~~i~~e~~~~~~~---~~~~G--------------v~~~ 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHALDPIY---ARKLG--------------VDID 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEECTTSCCCHHH---HHHTT--------------CCGG
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCeEEEEecCCCCCHHH---HHHcC--------------CCHH
Confidence 367999999999999877665554332 367788888877776554 33331 1111
Q ss_pred HHHHHhcCCCcEEEECChHHHHHHhccCC-CCCCceeEEEEechhhhhh
Q 007774 136 KEKARLRKGISILVATPGRLLDHLKHTSS-FLHTNLRWIIFDEADRILE 183 (590)
Q Consensus 136 ~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~~~~~l~~lVlDEah~ll~ 183 (590)
+++|+-|..--++|.-... +.-..+++||+|.+..|..
T Consensus 1485 ----------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ----------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ----------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 2667777554333321111 1113678899999887654
No 250
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.04 E-value=6.3 Score=37.27 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHH-HHHHhcCC-----cEEEEccCcchHHHHHHH
Q 007774 27 STLCDQLRERLGFEAPTKVQAQA-IPVILSGR-----HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 27 ~~l~~~l~~~~g~~~~t~~Q~~~-i~~il~g~-----dvlv~a~TGsGKTl~~l~ 75 (590)
.++.+.| ...|++ +++-.. +..++.++ .+++.+|+|+|||+.+..
T Consensus 73 n~i~~~l-~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 73 NRIYKIL-ELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp CHHHHHH-HHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHH-HHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 3577777 445766 444333 45555543 489999999999987653
No 251
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=70.86 E-value=6.1 Score=46.26 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=46.2
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCC--C-CCCCCCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSP--R-IDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~--~-~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
.| ..+|.|.-|||||.+-.--++..+..... . ...-....+|+|+=|+.-|.++.+.+...+.
T Consensus 16 ~g-~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 16 QG-ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SS-CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 44 45999999999999888888888764210 0 0001345799999999999999988877654
No 252
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=70.80 E-value=11 Score=43.37 Aligned_cols=95 Identities=11% Similarity=0.101 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCc----ceEeccCCCChHH
Q 007774 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC----KTFRLHGNMKQED 374 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~v~~lhg~~~~~~ 374 (590)
...|....+-.+.... ..+.++||.++|+..+..+++.++.+... .++ .+..+||+.+..+
T Consensus 81 GSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~-------------~~i~~~~~v~~~~Gg~~~~~ 145 (1054)
T 1gku_B 81 GVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEK-------------AGVGTENLIGYYHGRIPKRE 145 (1054)
T ss_dssp TSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTT-------------TCCSGGGSEEECCSSCCSHH
T ss_pred CCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhh-------------cCCCccceEEEEeCCCChhh
Confidence 3456544444444333 24579999999999999999888775321 144 7889999999998
Q ss_pred HHHHHHHhhccCccEEEeccc-cccCCC-CCCCcEEEE
Q 007774 375 RRTTFGAFKTEKKALLLSTDV-AARGLD-FPKVKCIIQ 410 (590)
Q Consensus 375 R~~~~~~F~~~~~~vLiaTdv-~~rGlD-ip~v~~VI~ 410 (590)
+.+..+.+.+ .+|+|+|+- +..-+. +.++++||.
T Consensus 146 ~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 146 KENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp HHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred HHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 8888888877 899999962 222221 456777774
No 253
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.66 E-value=2.2 Score=41.44 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=16.3
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.+..+++.++||+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999754
No 254
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.65 E-value=3.3 Score=41.25 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=18.2
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
.+..+++.+|||||||... -.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL-~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL-AAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhcc
Confidence 4557899999999999543 3344444
No 255
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=70.10 E-value=45 Score=35.30 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=54.1
Q ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhc-CCCcEEEECChHHHHHHhccCCCCC
Q 007774 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLH 167 (590)
Q Consensus 92 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~ 167 (590)
.+.++||.|||+.-|..+++.+..... ....+..++|+....... +.++ ...+|+|||. .+. ..+++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDi 357 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDF 357 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCc
Confidence 456799999999999999999987643 134456677776544332 2333 4589999993 222 46777
Q ss_pred CceeEEEEech
Q 007774 168 TNLRWIIFDEA 178 (590)
Q Consensus 168 ~~l~~lVlDEa 178 (590)
.++++||.-..
T Consensus 358 p~v~~VI~~~~ 368 (579)
T 3sqw_A 358 PNVHEVLQIGV 368 (579)
T ss_dssp TTCCEEEEESC
T ss_pred ccCCEEEEcCC
Confidence 88998886553
No 256
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.10 E-value=4.7 Score=36.56 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhcC----CcEEEEccCcchHHHHHHHHHHHH
Q 007774 28 TLCDQLRERLGFEAPTKVQAQAIPVILSG----RHVLVNAATGTGKTVAYLAPIINH 80 (590)
Q Consensus 28 ~l~~~l~~~~g~~~~t~~Q~~~i~~il~g----~dvlv~a~TGsGKTl~~l~pil~~ 80 (590)
.|.+.|. --|+ .+... ..++..++.+ +.+++.+|+|+|||..+.. ++..
T Consensus 29 ~I~~~l~-yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~a-la~~ 81 (212)
T 1tue_A 29 PIVQFLR-YQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMS-FIHF 81 (212)
T ss_dssp HHHHHHH-HTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHH-HHHH
T ss_pred HHHHHHH-HcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHH-HHHH
Confidence 4566663 2233 35555 4445555544 3589999999999975533 4443
No 257
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=69.99 E-value=21 Score=35.74 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=52.6
Q ss_pred ceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc----
Q 007774 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV---- 395 (590)
Q Consensus 320 ~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv---- 395 (590)
.++||.++|++.+..+++.+..+... .+..+..++|+.+..+....+ .....|+|+|.-
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~ 164 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYR-------------SRVRPCVVYGGADIGQQIRDL----ERGCHLLVATPGRLVD 164 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTT-------------SSCCEEEECSSSCHHHHHHHH----TTCCSEEEECHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCc-------------CCceEEEEECCCCHHHHHHHh----hCCCCEEEEChHHHHH
Confidence 47999999999999998888765321 266788899998776544332 235789999962
Q ss_pred -ccc-CCCCCCCcEEEE
Q 007774 396 -AAR-GLDFPKVKCIIQ 410 (590)
Q Consensus 396 -~~r-GlDip~v~~VI~ 410 (590)
+.+ .+++.++++||.
T Consensus 165 ~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 165 MMERGKIGLDFCKYLVL 181 (417)
T ss_dssp HHHTTSBCCTTCCEEEE
T ss_pred HHHcCCcChhhCcEEEE
Confidence 222 356778888774
No 258
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=69.17 E-value=3.8 Score=42.96 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=22.1
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEccCcchHHHH
Q 007774 42 PTKVQAQAIPV-ILSGRHVLVNAATGTGKTVA 72 (590)
Q Consensus 42 ~t~~Q~~~i~~-il~g~dvlv~a~TGsGKTl~ 72 (590)
+++.+..-+.. +-.|..+++.+|||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44545555544 34678899999999999953
No 259
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=68.96 E-value=6.3 Score=37.86 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.1
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
...+++.||+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997543
No 260
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=68.80 E-value=6.5 Score=35.67 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=55.4
Q ss_pred ChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 301 SRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 301 ~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
.|... +..++........+.++||.++|++.+...++.+..+..... ...+..+..++|+.+..+..
T Consensus 53 GKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~--- 120 (219)
T 1q0u_A 53 GKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP---------KDRMIVARCLIGGTDKQKAL--- 120 (219)
T ss_dssp HHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC---------GGGCCCEEEECCCSHHHHTT---
T ss_pred hHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc---------cccceEEEEEeCCCCHHHHH---
Confidence 34433 333444333223456899999999999988888776532110 00145677788887543321
Q ss_pred HHhhccCccEEEecc-----cccc-CCCCCCCcEEEE
Q 007774 380 GAFKTEKKALLLSTD-----VAAR-GLDFPKVKCIIQ 410 (590)
Q Consensus 380 ~~F~~~~~~vLiaTd-----v~~r-GlDip~v~~VI~ 410 (590)
+.+ ....+|+|+|. .+.+ .+++.++++||.
T Consensus 121 ~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 121 EKL-NVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp CCC-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred HHc-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 111 23578999995 2223 345566776664
No 261
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=68.41 E-value=29 Score=30.01 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=49.3
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhc-CCCcEEEECChHHHHHHhccCCCCCC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
+.++||.|+++.-+..+++.+... ...+..++|+....... +.++ ...+|+|+|.- + ...+++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~--~~Gldi~ 98 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F--GRGMDIE 98 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C--STTCCGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h--hcCcchh
Confidence 457999999999999998888764 34456677776544332 3333 34899999931 1 2456667
Q ss_pred ceeEEEEec
Q 007774 169 NLRWIIFDE 177 (590)
Q Consensus 169 ~l~~lVlDE 177 (590)
.++++|.-.
T Consensus 99 ~~~~Vi~~d 107 (172)
T 1t5i_A 99 RVNIAFNYD 107 (172)
T ss_dssp GCSEEEESS
T ss_pred hCCEEEEEC
Confidence 888888643
No 262
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=67.71 E-value=26 Score=35.61 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=14.9
Q ss_pred CcEEEEccCcchHHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLAP 76 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~p 76 (590)
+-+++.+++|+|||......
T Consensus 99 ~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34678899999999765443
No 263
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.48 E-value=1.2 Score=42.18 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=30.1
Q ss_pred ccCCccCCCCCHHHHHHHHHhCC-CCCCcHHHHHHHHHH--hcCCcEEEEccCcchHHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLG-FEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g-~~~~t~~Q~~~i~~i--l~g~dvlv~a~TGsGKTl~~l~ 75 (590)
...+|+++.-.+...+.+.+... +..+ +.+..+ ...+.+++.||+|+|||..+-.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYP-----ERYANLGAKIPKGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCH-----HHHHHHSCCCCSCCCCBCSSCSSHHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCh-----HHHHHCCCCCCceEEEECCCCCcHHHHHHH
Confidence 34578887655555555543211 0001 111111 1245699999999999976543
No 264
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=67.35 E-value=2.2 Score=41.25 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=15.8
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
.++++.||+|+|||..+-.
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999976543
No 265
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.92 E-value=23 Score=35.39 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=60.3
Q ss_pred ChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 301 SRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 301 ~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
.|... +..++........+.+++|.++++..+..+++.+..+.. ..+..+..++|+...... .
T Consensus 89 GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~---~ 152 (414)
T 3eiq_A 89 GKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD-------------YMGASCHACIGGTNVRAE---V 152 (414)
T ss_dssp SSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG-------------GSCCCEEECCCCTTHHHH---H
T ss_pred cccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc-------------ccCceEEEEECCcchHHH---H
Confidence 45443 444444433223467899999999999988888876531 125567777777654433 4
Q ss_pred HHhhccCccEEEecc-----cccc-CCCCCCCcEEEE
Q 007774 380 GAFKTEKKALLLSTD-----VAAR-GLDFPKVKCIIQ 410 (590)
Q Consensus 380 ~~F~~~~~~vLiaTd-----v~~r-GlDip~v~~VI~ 410 (590)
+....+...|+|+|. .+.+ .+++..+++||.
T Consensus 153 ~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 153 QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp HHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred HHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 455567789999994 2333 356667887774
No 266
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=66.66 E-value=9.4 Score=37.12 Aligned_cols=51 Identities=18% Similarity=0.014 Sum_probs=31.4
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 115 (590)
.|.-+++.|++|+|||...+-.+...... +..+++++.- +-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~---------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT---------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEECC-CCHHHHHHHHHH
Confidence 45668999999999996554444443321 3557777643 344555555443
No 267
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=66.11 E-value=5.2 Score=38.43 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.1
Q ss_pred cCCcEEEEccCcchHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~ 75 (590)
.|.-+++.|++|+|||.....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHH
Confidence 577789999999999965444
No 268
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=65.76 E-value=2.6 Score=40.56 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=32.5
Q ss_pred cCCccCCCCCHHHHHHHHHhCCC--CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGF--EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~--~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
..+|+++.-.+...+.|.+.... ..|..+. .....++.+++.||+|+|||..+-
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFT----GLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSC----GGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHh----cCCCCCCeEEEECcCCCCHHHHHH
Confidence 45788887777777777543210 0000000 001135789999999999997553
No 269
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=65.24 E-value=20 Score=36.47 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 300 ~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
..|.......+...+. ..+.++||.+++...+...++.+.+... .+...+..+||+....++....
T Consensus 34 ~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~-------------~~~~~v~~~~g~~~~~~~~~~~ 99 (494)
T 1wp9_A 34 LGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFN-------------LPPEKIVALTGEKSPEERSKAW 99 (494)
T ss_dssp SCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBC-------------SCGGGEEEECSCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhC-------------cchhheEEeeCCcchhhhhhhc
Confidence 4566555555444332 3467999999999999888887776521 1245889999999887765544
Q ss_pred HHhhccCccEEEeccc-cc-----cCCCCCCCcEEEE
Q 007774 380 GAFKTEKKALLLSTDV-AA-----RGLDFPKVKCIIQ 410 (590)
Q Consensus 380 ~~F~~~~~~vLiaTdv-~~-----rGlDip~v~~VI~ 410 (590)
. ...|+|+|.- +. ..++..++++||.
T Consensus 100 ~-----~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 100 A-----RAKVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp H-----HCSEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred c-----CCCEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 3 4689999852 22 2456777888774
No 270
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.20 E-value=8.6 Score=35.54 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=48.9
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc--
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-- 395 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv-- 395 (590)
.+.++||.++|++.+...++.+..+... .+..+..++|+.....+ ......+..+|+|+|.-
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l 160 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEG-------------TGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRL 160 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTT-------------SCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc-------------cCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHH
Confidence 3458999999999999998888775321 15566666665322211 11223456789999942
Q ss_pred ---ccc---CCCCCCCcEEEE
Q 007774 396 ---AAR---GLDFPKVKCIIQ 410 (590)
Q Consensus 396 ---~~r---GlDip~v~~VI~ 410 (590)
+.+ ++++.++++||.
T Consensus 161 ~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 161 IYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp HHHHHSSSCSCCCTTCCEEEE
T ss_pred HHHHHhCCCCcccccCcEEEE
Confidence 222 467778887764
No 271
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.05 E-value=2.1 Score=44.16 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=31.0
Q ss_pred cCCccCCCCCHHHHHHHHHhCCC--CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGF--EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~--~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
..+|+++.-.+.+...|.+...+ ..|..++ ......+.+++.||+|+|||..+-
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHHH
Confidence 45788886666666666542110 0111111 011234679999999999997554
No 272
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=63.71 E-value=3.3 Score=36.52 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCcchHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~ 73 (590)
..|+-+++.+|+|||||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999643
No 273
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=63.66 E-value=21 Score=37.28 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=48.5
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc---
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV--- 395 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv--- 395 (590)
+.++||.+++...+...+..+..... ..++.+..+||+.+...+...+. ....|+|||.-
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~-------------~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~ 117 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFE-------------RQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILV 117 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHG-------------GGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhc-------------ccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHH
Confidence 67899999999999888887776421 11678899999987655433221 23689999853
Q ss_pred --cccC-C-CCCCCcEEEE
Q 007774 396 --AARG-L-DFPKVKCIIQ 410 (590)
Q Consensus 396 --~~rG-l-Dip~v~~VI~ 410 (590)
+..| + ++.++++||.
T Consensus 118 ~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 118 NSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp HHHHSSSCCCSTTCSEEEE
T ss_pred HHHHhCcccccccCCEEEE
Confidence 2233 4 6678888875
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=63.52 E-value=3.4 Score=39.10 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCcchHHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~~ 73 (590)
+..|.-+++.+|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346778999999999999643
No 275
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=63.52 E-value=2.9 Score=41.65 Aligned_cols=20 Identities=45% Similarity=0.715 Sum_probs=16.4
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
++.+++.||+|+|||...-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999976543
No 276
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=63.44 E-value=2.8 Score=36.88 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.2
Q ss_pred hcCCcEEEEccCcchHHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~l 74 (590)
..++.+++.+++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999997543
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=62.77 E-value=3.5 Score=37.17 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=15.2
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|+-+++.+|||+|||-..
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3567899999999998543
No 278
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.33 E-value=3.2 Score=38.93 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=31.2
Q ss_pred ccCCccCCCCCHHHHHHHHHhCC-CCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g-~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
...+|+++.-.+.+.+.+.+... +..+..++... ....+.+++.+|+|+|||...-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHH
Confidence 34688888777777766643110 11111111111 0123569999999999996543
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=62.21 E-value=3.6 Score=36.89 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.7
Q ss_pred cCCcEEEEccCcchHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l 74 (590)
.++.+++.+++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56789999999999997543
No 280
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=62.05 E-value=3.8 Score=40.28 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.3
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
+-++|.||||||||-..
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999644
No 281
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=61.75 E-value=8.2 Score=35.51 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=18.8
Q ss_pred cEEEEccCcchHHHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
++++.++.|+|||...+--+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999987666555443
No 282
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=61.74 E-value=4.9 Score=36.24 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=15.9
Q ss_pred cEEEEccCcchHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPII 78 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil 78 (590)
-.++.|+.|||||.....-+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 368999999999986544333
No 283
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=61.69 E-value=3.9 Score=39.77 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=13.8
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
+-++|.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34789999999999644
No 284
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=61.66 E-value=3.1 Score=40.13 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=15.0
Q ss_pred CcEEEEccCcchHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l 74 (590)
+.+++.+|+|+|||...-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568999999999997543
No 285
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=61.62 E-value=9.2 Score=39.21 Aligned_cols=68 Identities=10% Similarity=-0.008 Sum_probs=43.4
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhc-CCCcEEEECChHHHHHHhccCCCCCCcee
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLR 171 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~ 171 (590)
+.++||+|||++-|..+++.+... ...+..++|.. .......++ ...+|+|+|. .+. ..+++. ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v~e--~GiDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----IAE--MGANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSS-CC--------CCCSEEEESS-----STT--CCTTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchh-HHHHHhhhcCCCceEEEECC-----hhh--eeeccC-ce
Confidence 467999999999999999888764 24566666643 333334444 4489999993 222 345666 77
Q ss_pred EEE
Q 007774 172 WII 174 (590)
Q Consensus 172 ~lV 174 (590)
+||
T Consensus 243 ~VI 245 (440)
T 1yks_A 243 RVL 245 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 286
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=61.40 E-value=7.4 Score=35.31 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=26.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHH
Q 007774 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 39 ~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
+..-+.-|..++.-+..|.-+.+.+|.|||||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34334456677777888988999999999999643
No 287
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=61.17 E-value=15 Score=32.85 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=37.1
Q ss_pred CceEEEEecchhhHHH-HHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc
Q 007774 319 SQKLVVFFSTCDAVDF-HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv 395 (590)
..+++|++++...++. +.+.+..+.. .+..+..++|+.....+...+. ....|+|+|.-
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~--------------~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLK--------------KWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHT--------------TTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhc--------------cCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 5799999999998877 6666665421 1567888888775543322221 24678998853
No 288
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=61.09 E-value=3.9 Score=35.67 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.0
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
++-+++.|++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999644
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=61.09 E-value=3.9 Score=36.00 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.2
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
++.+++.+++|||||...-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46799999999999975543
No 290
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=60.73 E-value=4.4 Score=39.28 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.4
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-++|.+|||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999644
No 291
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=60.68 E-value=5.1 Score=39.93 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCcchHHH
Q 007774 54 LSGRHVLVNAATGTGKTV 71 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl 71 (590)
..|..+++.+|||||||.
T Consensus 173 ~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HTTCCEEEEESSSSCHHH
T ss_pred hcCCEEEEECCCCCCHHH
Confidence 468899999999999995
No 292
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=60.20 E-value=10 Score=38.74 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=37.5
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHh-cCCCcEEEEC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL-RKGISILVAT 151 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~T 151 (590)
+.++||++|+++-+..+++.+... ...+..++|+. .....+.+ ....+|+|+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC
Confidence 457999999999999999888764 34566666653 33233333 3458999999
No 293
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=60.19 E-value=31 Score=34.25 Aligned_cols=71 Identities=17% Similarity=0.077 Sum_probs=50.6
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhcC-CCcEEEECChHHHHHHhccCCCCCC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLRK-GISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
+.++||.++++.-+..+++.+... ...+..++|+....... +.++. ..+|+|+|. .+. ..+++.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 333 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVE 333 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCcc
Confidence 457999999999999999888764 34566777776554432 33343 488999993 222 567788
Q ss_pred ceeEEEE
Q 007774 169 NLRWIIF 175 (590)
Q Consensus 169 ~l~~lVl 175 (590)
+++++|.
T Consensus 334 ~~~~Vi~ 340 (412)
T 3fht_A 334 QVSVVIN 340 (412)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 9998884
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=60.17 E-value=3.9 Score=36.82 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=17.4
Q ss_pred HhcCCcEEEEccCcchHHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~~ 73 (590)
+..|+-+++.+|+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456788999999999999643
No 295
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=60.03 E-value=7 Score=45.68 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=29.9
Q ss_pred EEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHH
Q 007774 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (590)
Q Consensus 60 lv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptre 104 (590)
+|.|..|||||.+.+--+...+... ..+..+|+|||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~------~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA------PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC------TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC------CCCCcEEEEecCcc
Confidence 7899999999998877777766542 23467999999763
No 296
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=59.70 E-value=13 Score=38.92 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=20.0
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
+-.++|.+.||||||.+.-..+...+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999765554444444
No 297
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=58.80 E-value=8 Score=38.40 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=26.2
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt 102 (590)
|+-+++.+++|+|||...+-.+.+... .+..++++...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~---------~g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEeCC
Confidence 467899999999999766555544432 23457777753
No 298
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=58.67 E-value=4.3 Score=39.91 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCcchHHH
Q 007774 54 LSGRHVLVNAATGTGKTV 71 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl 71 (590)
..|..+++.+|||||||.
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 368899999999999996
No 299
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=58.62 E-value=5.2 Score=44.00 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=20.6
Q ss_pred HHHHHhcCCc--EEEEccCcchHHHHH
Q 007774 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (590)
Q Consensus 49 ~i~~il~g~d--vlv~a~TGsGKTl~~ 73 (590)
.+..+++|.| ++..++||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677788887 578899999999875
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.44 E-value=4.2 Score=35.07 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.5
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 301
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=58.32 E-value=14 Score=39.11 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=27.2
Q ss_pred CcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc
Q 007774 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt 102 (590)
-+++|.+.||||||.+.-..++..+....+ ...+.+++=|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP-----~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTP-----SEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCT-----TTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCC-----cceEEEEeCCC
Confidence 579999999999998766655655544222 23555555555
No 302
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.18 E-value=5.2 Score=41.32 Aligned_cols=20 Identities=55% Similarity=0.747 Sum_probs=16.7
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
++.+++.+|+|+|||..+-.
T Consensus 63 ~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHH
Confidence 46899999999999976543
No 303
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=58.14 E-value=4.6 Score=40.44 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.0
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
...+++.+|+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997553
No 304
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=58.03 E-value=31 Score=37.38 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhc-CCCcEEEECChHHHHHHhccCCCCC
Q 007774 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLH 167 (590)
Q Consensus 92 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~ 167 (590)
.+.++||.|+|+.-+..+.+.+... .+.+..++|+....... +.++ ...+|+|||- .+ ...+++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l--~~GlDi 511 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL--REGLDI 511 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC--STTCCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh--hCCccc
Confidence 3568999999999999888888764 24455666665443332 2233 3489999993 22 256788
Q ss_pred CceeEEEEechhh
Q 007774 168 TNLRWIIFDEADR 180 (590)
Q Consensus 168 ~~l~~lVlDEah~ 180 (590)
.+++++|+-++|.
T Consensus 512 p~v~lVi~~d~d~ 524 (661)
T 2d7d_A 512 PEVSLVAILDADK 524 (661)
T ss_dssp TTEEEEEETTTTC
T ss_pred CCCCEEEEeCccc
Confidence 8999999999875
No 305
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=57.50 E-value=4.8 Score=36.06 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCcchHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~ 73 (590)
..|.-+.+.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999643
No 306
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=57.34 E-value=4.9 Score=36.05 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=14.8
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999643
No 307
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=57.24 E-value=11 Score=36.38 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.9
Q ss_pred CCcEEEEccCcchHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pi 77 (590)
++-+++.+++|+|||......+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999997654433
No 308
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=56.92 E-value=9.5 Score=39.18 Aligned_cols=49 Identities=18% Similarity=0.040 Sum_probs=30.3
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
.|.-+++.|++|+|||...+-.+...... |..+++++.- +-..|+...+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---------g~~vl~fSlE-ms~~ql~~R~ 244 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRL 244 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---------TCEEEEECSS-SCTTHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---------CCEEEEEECC-CCHHHHHHHH
Confidence 35568999999999996555544444322 4567777643 3334444443
No 309
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=56.76 E-value=21 Score=31.36 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=42.1
Q ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHH---HHHhc-CCCcEEEECChHHHHHHhccCCCCC
Q 007774 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLR-KGISILVATPGRLLDHLKHTSSFLH 167 (590)
Q Consensus 92 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~ 167 (590)
.+.++||.++|+.-+..+++.+... ...+..+.|+...... .+.++ ...+|+|+|. . +. ..+++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~--~Gldi 112 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V----AA--RGLDI 112 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-h----hh--cCCCc
Confidence 3567999999999999988888753 3445666666443222 23333 4588999992 1 11 34566
Q ss_pred CceeEEEE
Q 007774 168 TNLRWIIF 175 (590)
Q Consensus 168 ~~l~~lVl 175 (590)
..++++|.
T Consensus 113 ~~~~~VI~ 120 (185)
T 2jgn_A 113 SNVKHVIN 120 (185)
T ss_dssp CSBSEEEE
T ss_pred ccCCEEEE
Confidence 77887776
No 310
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=56.73 E-value=5.4 Score=38.45 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=15.5
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
..+++.+|+|+|||..+-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 3699999999999976543
No 311
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=56.69 E-value=5.2 Score=35.31 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=16.1
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.+..+++.+++|||||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999754
No 312
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=56.58 E-value=4.4 Score=36.51 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCcchHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~ 73 (590)
..|+-+++.||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36778999999999999643
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.57 E-value=5.1 Score=35.30 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.2
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
+.-+++.+++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999644
No 314
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=56.14 E-value=19 Score=37.55 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHhhhcccC---CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEV---SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~---~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R 375 (590)
...|.......+...+.... +.++||.+++...+...+..+...... .++.+..+||+.+...+
T Consensus 29 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 29 GCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-------------LGYNIASISGATSDSVS 95 (555)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-------------TTCCEEEECTTTGGGSC
T ss_pred CChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-------------CCcEEEEEcCCCcchhh
Confidence 34565443333333332222 678999999999988888877765211 16788999999976655
Q ss_pred HHHHHHhhccCccEEEeccc-----cccC-C-CCCCCcEEEE
Q 007774 376 RTTFGAFKTEKKALLLSTDV-----AARG-L-DFPKVKCIIQ 410 (590)
Q Consensus 376 ~~~~~~F~~~~~~vLiaTdv-----~~rG-l-Dip~v~~VI~ 410 (590)
...+. +...|+|||.- +..| + ++.++++||.
T Consensus 96 ~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 96 VQHII----EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp HHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred HHHHh----cCCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 33322 24689999853 2222 3 5567788774
No 315
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=56.14 E-value=4.8 Score=37.83 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=13.2
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+++.+|||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999643
No 316
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=56.06 E-value=6.7 Score=35.42 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=15.7
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|+-+++.||+|||||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999643
No 317
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=56.06 E-value=10 Score=37.47 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=25.6
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt 102 (590)
|+-+++.+++|||||...+..+..... .+..++++.-.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~---------~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA---------AGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---------TTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---------CCCeEEEEECC
Confidence 466899999999999766555444432 24457777643
No 318
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=55.81 E-value=11 Score=36.91 Aligned_cols=56 Identities=11% Similarity=-0.013 Sum_probs=30.7
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHH-HHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL-CLQVYEILH 114 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreL-a~Q~~~~~~ 114 (590)
|.-+++.+++|+|||...+..+........ +. ..+..++++.-...+ ..++.+.+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~--~g-g~~~~vlyi~~e~~~~~~~l~~~~~ 163 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KG-GLSGKAVYIDTEGTFRWERIENMAK 163 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG--GT-CCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccc--cC-CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999765554443221100 00 114567777654322 344444443
No 319
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=55.69 E-value=13 Score=32.49 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=16.2
Q ss_pred cEEEEccCcchHHHHHHHHHHHHHh
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
-+.+.++.|||||.. +.-++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 367899999999953 333444443
No 320
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=55.33 E-value=5.3 Score=39.98 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCcchHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~ 73 (590)
..|..+++.+|||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999643
No 321
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=55.23 E-value=9.4 Score=38.05 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHhc------CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCc
Q 007774 49 AIPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (590)
Q Consensus 49 ~i~~il~------g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Pt 102 (590)
.+..++. |+-++|.+++|+|||...+-.+.+.. . .+..++++..-
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~-~--------~g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ-K--------AGGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH-H--------CCCeEEEEECC
Confidence 3555554 45689999999999965554444433 2 13457777654
No 322
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=54.99 E-value=50 Score=32.41 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=53.1
Q ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhcC-CCcEEEECChHHHHHHhccCCCCC
Q 007774 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLRK-GISILVATPGRLLDHLKHTSSFLH 167 (590)
Q Consensus 92 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~ 167 (590)
.+.++||.++++.-+..+++.+... ...+..++|+....... +.++. ..+|+|+|. .+ ...+++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~--~~Gidi 309 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL--ARGIDI 309 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG--SSSCCC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh--hcCCCc
Confidence 3567999999999999998888764 34566777776554332 33444 478999993 22 256778
Q ss_pred CceeEEEEechh
Q 007774 168 TNLRWIIFDEAD 179 (590)
Q Consensus 168 ~~l~~lVlDEah 179 (590)
.+++++|.-...
T Consensus 310 p~~~~Vi~~~~p 321 (395)
T 3pey_A 310 PTVSMVVNYDLP 321 (395)
T ss_dssp TTEEEEEESSCC
T ss_pred ccCCEEEEcCCC
Confidence 899998875443
No 323
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=54.91 E-value=18 Score=34.66 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=30.3
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
+...+|+++--.+...+.+.+. +.. -....+++.||+|+|||...-.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~--l~~------------~~~~~~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGY--VER------------KNIPHLLFSGPPGTGKTATAIA 57 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTT--TTT------------TCCCCEEEESSSSSSHHHHHHH
T ss_pred cCCCCHHHHhCCHHHHHHHHHH--HhC------------CCCCeEEEECcCCcCHHHHHHH
Confidence 4455777776677777777432 111 0122599999999999965433
No 324
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=54.49 E-value=48 Score=31.64 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=51.8
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecccc--
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA-- 396 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~-- 396 (590)
+.++||.+++...+...++.+..+.. ..+..+..++|+.+..+....+ . ..+|+|+|.-.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~ 117 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGR-------------YMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLL 117 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTT-------------TSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhh-------------hcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHH
Confidence 57899999999999998888876531 1256788899998876554332 2 37899999531
Q ss_pred ---cc-CCCCCCCcEEEE
Q 007774 397 ---AR-GLDFPKVKCIIQ 410 (590)
Q Consensus 397 ---~r-GlDip~v~~VI~ 410 (590)
.. .+++.++++||.
T Consensus 118 ~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 118 DLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp HHHHTTSCCGGGCSEEEE
T ss_pred HHHHcCCcchhhCcEEEE
Confidence 22 345667777774
No 325
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=54.21 E-value=27 Score=38.72 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHhhhcccC---CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEV---SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~---~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R 375 (590)
...|.......+...+.... +.++||.+++...+...+..+..... ..++.+..+||+.+...+
T Consensus 273 GsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~-------------~~~~~v~~~~g~~~~~~~ 339 (797)
T 4a2q_A 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-------------RQGYSVQGISGENFSNVS 339 (797)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG-------------GGTCCEEEECCC-----C
T ss_pred CChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc-------------cCCceEEEEeCCcchhhh
Confidence 34565544444433332222 67999999999999888887776521 117789999999876654
Q ss_pred HHHHHHhhccCccEEEeccc-----cccC-C-CCCCCcEEEE
Q 007774 376 RTTFGAFKTEKKALLLSTDV-----AARG-L-DFPKVKCIIQ 410 (590)
Q Consensus 376 ~~~~~~F~~~~~~vLiaTdv-----~~rG-l-Dip~v~~VI~ 410 (590)
...+. +..+|+|||.- +.++ + ++.++++||.
T Consensus 340 ~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 340 VEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp HHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred HHHhh----CCCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 33221 35789999952 2222 3 5567788874
No 326
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=54.09 E-value=19 Score=37.78 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=22.7
Q ss_pred CceeEEEEechhhhhhcC-----chHHHHHHHHHhcc
Q 007774 168 TNLRWIIFDEADRILELG-----FGKEIEEILDILGS 199 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~g-----f~~~l~~il~~l~~ 199 (590)
.+.++||+| -=.-+|.. ....+..++..+..
T Consensus 370 ~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~ 405 (525)
T 1tf7_A 370 FKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ 405 (525)
T ss_dssp TCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh
Confidence 466789999 65667777 67777777777754
No 327
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=53.90 E-value=6.4 Score=34.05 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.1
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
+..+++.++.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999643
No 328
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=53.54 E-value=4.4 Score=35.84 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCcchHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVA 72 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~ 72 (590)
..|.-+++.+++|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567789999999999963
No 329
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=53.46 E-value=11 Score=47.53 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCcHHHHH-HH---HHHhcCCcEEEEccCcchHHHHHHH
Q 007774 27 STLCDQLRERLGFEAPTKVQAQ-AI---PVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 27 ~~l~~~l~~~~g~~~~t~~Q~~-~i---~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
+.+.+.+. .+|+. +++.+.. ++ ..+.....+++.||||||||.++-+
T Consensus 892 ~~i~~~~~-~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 892 QCLKDAGQ-RSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHH-HHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHH-HcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 33455553 45776 6665533 32 3334567899999999999988643
No 330
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=53.39 E-value=5.8 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.5
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999644
No 331
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.39 E-value=4.3 Score=39.44 Aligned_cols=51 Identities=24% Similarity=0.172 Sum_probs=28.9
Q ss_pred cccCCccCCCCCHHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 15 ~~~~~f~~l~l~~~l~~~l~~~~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
+...+|+++--.+.....+.+.. +. +...--....+++.||+|+|||..+-
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l--------~~-~~~~~~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYL--------EA-AKARKEPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHH--------HH-HHHHCSCCCCCEEECCTTCCCHHHHH
T ss_pred cCcccHHHhhCHHHHHHHHHHHH--------HH-HHccCCCCCcEEEECCCCCCHHHHHH
Confidence 44557777755555555553210 00 00000133689999999999997543
No 332
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=52.93 E-value=7.1 Score=38.14 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.7
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+++.+|||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999644
No 333
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=52.81 E-value=4 Score=40.19 Aligned_cols=19 Identities=42% Similarity=0.358 Sum_probs=15.7
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
...+++.||+|+|||...-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997543
No 334
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.62 E-value=11 Score=36.97 Aligned_cols=18 Identities=44% Similarity=0.641 Sum_probs=15.0
Q ss_pred CcEEEEccCcchHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l 74 (590)
.++++.||+|+|||...-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 459999999999997543
No 335
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=52.54 E-value=5.6 Score=35.42 Aligned_cols=16 Identities=31% Similarity=0.709 Sum_probs=13.8
Q ss_pred CcEEEEccCcchHHHH
Q 007774 57 RHVLVNAATGTGKTVA 72 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~ 72 (590)
|-+++.||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999963
No 336
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=52.15 E-value=57 Score=36.00 Aligned_cols=76 Identities=7% Similarity=0.062 Sum_probs=51.3
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhc------CCcceEEEEcCCchHHHHHHhc--------C-CCcEEEECChHHHH
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRF------HWIVPGYVMGGENRSKEKARLR--------K-GISILVATPGRLLD 157 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~------~~~~~~~~~gg~~~~~~~~~l~--------~-~~~IlV~Tp~rl~~ 157 (590)
+..+||.+|++.-+.++++.+....... ....+..++|+-....+...+. . ...|||+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 5679999999999999999888643222 4456777788776554443322 2 368999993
Q ss_pred HHhccCCCCCCceeEEEE
Q 007774 158 HLKHTSSFLHTNLRWIIF 175 (590)
Q Consensus 158 ~l~~~~~~~~~~l~~lVl 175 (590)
.+. .++++.++++||-
T Consensus 378 iae--~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE--TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH--HTCCCTTEEEEEE
T ss_pred HHH--hCcCcCCeEEEEe
Confidence 222 3466778887663
No 337
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=51.94 E-value=6.8 Score=34.97 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.8
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677899999999999643
No 338
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=51.70 E-value=7.7 Score=38.17 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.6
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-++|.||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999644
No 339
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=51.56 E-value=6.2 Score=36.81 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.4
Q ss_pred ccCCccCCCCCHHHHHHHHHhC-CCCCCcHHHHHHHHHHh--cCCcEEEEccCcchHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERL-GFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~-g~~~~t~~Q~~~i~~il--~g~dvlv~a~TGsGKTl~~ 73 (590)
...+|+++.-.+.....+.+-. .+.. ...+..+- -.+.+++.+|+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3458888877777666664310 0111 11222211 1345999999999999644
No 340
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=51.16 E-value=6.7 Score=33.77 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=13.6
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 341
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=51.15 E-value=5.1 Score=44.39 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=34.7
Q ss_pred cCCccCCCCCHHHHHHHHHhCCC--CCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGF--EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~--~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
..+|++++.-+...+.|.+..-+ ..|..++... +...+.+|+.+|+|+|||+.+-
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHHH
Confidence 45799998888888888654322 2222221111 1123579999999999997543
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=50.88 E-value=5.2 Score=35.16 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=15.9
Q ss_pred cCCcEEEEccCcchHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l 74 (590)
.|..+++.+++|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35568999999999997543
No 343
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=50.76 E-value=7.3 Score=41.74 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=13.8
Q ss_pred cEEEEccCcchHHHH
Q 007774 58 HVLVNAATGTGKTVA 72 (590)
Q Consensus 58 dvlv~a~TGsGKTl~ 72 (590)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999963
No 344
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=50.76 E-value=7.8 Score=34.21 Aligned_cols=16 Identities=31% Similarity=0.709 Sum_probs=13.5
Q ss_pred CcEEEEccCcchHHHH
Q 007774 57 RHVLVNAATGTGKTVA 72 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~ 72 (590)
+-+.+.+|+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999964
No 345
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=50.09 E-value=8.2 Score=35.20 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCcchHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVA 72 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~ 72 (590)
-.|+-+.+.+|+|||||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3678899999999999963
No 346
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=50.06 E-value=30 Score=35.85 Aligned_cols=91 Identities=9% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~ 378 (590)
...|.......+..... ....+++|.+++...+..+++.+..... +++..+..++|+.+..++
T Consensus 138 GsGKT~~~~~~~~~~~~-~~~~~vlvl~P~~~L~~Q~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~--- 200 (510)
T 2oca_A 138 SAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRL-------------FSHAMIKKIGGGASKDDK--- 200 (510)
T ss_dssp TTTHHHHHHHHHHHHHH-HCSSEEEEEESSHHHHHHHHHHHHHTTS-------------SCGGGEEECGGGCCTTGG---
T ss_pred CCCHHHHHHHHHHHHHh-CCCCeEEEEECcHHHHHHHHHHHHHhhc-------------CCccceEEEecCCccccc---
Confidence 34666555444444332 2345999999999999988888876521 235678889999877654
Q ss_pred HHHhhccCccEEEeccc-cccC--CCCCCCcEEEE
Q 007774 379 FGAFKTEKKALLLSTDV-AARG--LDFPKVKCIIQ 410 (590)
Q Consensus 379 ~~~F~~~~~~vLiaTdv-~~rG--lDip~v~~VI~ 410 (590)
..+...|+|+|.- +.+. ..+.++++||.
T Consensus 201 ----~~~~~~I~i~T~~~l~~~~~~~~~~~~liIi 231 (510)
T 2oca_A 201 ----YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMN 231 (510)
T ss_dssp ----GCTTCSEEEEEHHHHTTSCGGGGGGEEEEEE
T ss_pred ----cccCCcEEEEeHHHHhhchhhhhhcCCEEEE
Confidence 4577899999853 3222 33456777774
No 347
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.99 E-value=9.1 Score=39.62 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.5
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
..++++.||+|+|||...-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45899999999999976544
No 348
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=49.78 E-value=8.4 Score=36.08 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=17.7
Q ss_pred hcCCcEEEEccCcchHHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~l 74 (590)
+.|+.+++.+++|||||...-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 458999999999999997543
No 349
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=49.55 E-value=9.5 Score=38.44 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.2
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-++|.||||||||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3689999999999544
No 350
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=49.11 E-value=35 Score=30.05 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=18.3
Q ss_pred CcEEEECChHHHHHHhccCCCCCCceeEEEEechh
Q 007774 145 ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD 179 (590)
Q Consensus 145 ~~IlV~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah 179 (590)
.+++-+.+..+...+.... ...+++|+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l~----~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKDL----ADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHHT----TTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHhc----CCCCEEEEECCC
Confidence 4555555666666554421 356788888544
No 351
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=48.97 E-value=6.7 Score=34.55 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.2
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
+.-+++.+++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4468999999999997543
No 352
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=48.61 E-value=7 Score=33.95 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.1
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
|..+++.++.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556899999999999654
No 353
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=48.49 E-value=8.4 Score=34.44 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=15.8
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|.-+++.++.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677999999999999643
No 354
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=48.26 E-value=13 Score=36.79 Aligned_cols=46 Identities=26% Similarity=0.267 Sum_probs=28.8
Q ss_pred HHHHHhc------CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 49 AIPVILS------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 49 ~i~~il~------g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
.+..++. |.-++|.+|+|+|||... +.++..+.. .+..++++....
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa-l~la~~~~~--------~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLA-LHAIAEAQK--------MGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEeccc
Confidence 3555555 456899999999999644 444443332 244577776543
No 355
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=47.70 E-value=7.4 Score=33.88 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.0
Q ss_pred cCCcEEEEccCcchHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l 74 (590)
.|.-+.+.+|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668999999999996544
No 356
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=47.16 E-value=15 Score=35.74 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=18.2
Q ss_pred CCcEEEEccCcchHHHHHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~ 79 (590)
|.-+++.+++|+|||...+-.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999766554444
No 357
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=47.15 E-value=10 Score=34.19 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=21.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCcchHHHHH
Q 007774 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 42 ~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
.++.++.. ..+..|.-+++.+++|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 45555555 33456777899999999999644
No 358
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=47.09 E-value=8.9 Score=39.27 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.6
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999754
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=47.07 E-value=7.5 Score=34.70 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.9
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
+..+++.+++|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446899999999999754
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=46.93 E-value=9.1 Score=33.77 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCcchHHHHH
Q 007774 54 LSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl~~ 73 (590)
..+.-+++.+++|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667999999999999754
No 361
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=46.69 E-value=14 Score=38.51 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=30.4
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 113 (590)
.|.-++|.|++|+|||...+-.+.+.... .|..+++++-- +-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT--------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh--------cCCcEEEEecc-CCHHHHHHHH
Confidence 45678999999999996555544443321 24557777643 2244555443
No 362
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=46.52 E-value=18 Score=39.26 Aligned_cols=68 Identities=7% Similarity=0.004 Sum_probs=45.2
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcC-CCcEEEECChHHHHHHhccCCCCCCcee
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLR 171 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~ 171 (590)
+.++||+|||++-+..+++.+... ...+..++|. ......+.++. ..+|+|+|- .+. ..+++. ++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e--~GIDip-v~ 475 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE--MGANFG-AS 475 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG--TTCCCC-CS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh--cceeeC-Cc
Confidence 567999999999999888887753 3456666663 33333344444 489999992 222 345666 66
Q ss_pred EEE
Q 007774 172 WII 174 (590)
Q Consensus 172 ~lV 174 (590)
+||
T Consensus 476 ~VI 478 (673)
T 2wv9_A 476 RVI 478 (673)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=46.24 E-value=8.6 Score=34.24 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=15.9
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999654
No 364
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=46.17 E-value=8.4 Score=36.53 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.8
Q ss_pred ccCCccCCCCCHHHHHHHHHhC-CCCCCcHHHHHHHHHHh--cCCcEEEEccCcchHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERL-GFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~-g~~~~t~~Q~~~i~~il--~g~dvlv~a~TGsGKTl~~ 73 (590)
...+|+++.-.+.+...+.+-. .+.. ...+..+- -.+.+++.+|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 3467888877777776664310 0111 11222211 1245999999999999644
No 365
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=46.12 E-value=74 Score=30.41 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=48.3
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHH---HHhc-CCCcEEEECChHHHHHHhccCCCCCC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHT 168 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~ 168 (590)
+..+||.|+|++-+..+++.+... ...+..++|+....... ..++ ...+|+|+|- .+. ..+++.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~--~Gidi~ 95 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA--RGLDIP 95 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT--CSTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh--cCcccc
Confidence 467999999999988888877643 34566777776544332 3333 4489999992 222 456777
Q ss_pred ceeEEEE
Q 007774 169 NLRWIIF 175 (590)
Q Consensus 169 ~l~~lVl 175 (590)
.++++|.
T Consensus 96 ~v~~VI~ 102 (300)
T 3i32_A 96 QVDLVVH 102 (300)
T ss_dssp CCSEEEE
T ss_pred ceeEEEE
Confidence 8888774
No 366
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=45.45 E-value=8.5 Score=39.87 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=31.0
Q ss_pred cCCccCCCCCHHHHHHHHHhCC-CCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g-~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~l 74 (590)
..+|+++.-.+.....+.+-.. +..+..++.-. +.-.+.+++.+|+|+|||+.+-
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHHH
Confidence 4578888766666666643211 11121111100 0123569999999999997543
No 367
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=45.41 E-value=44 Score=36.98 Aligned_cols=72 Identities=10% Similarity=-0.039 Sum_probs=52.0
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc---
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV--- 395 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv--- 395 (590)
+..++|.++|+..|...++.+..+. .+.++.+..+.|+++...|.... ..+|+++|+-
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~-------------~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~ 175 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLF-------------EFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYG 175 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHH-------------HHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHH-------------HhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhh
Confidence 5689999999999998888877652 13378899999999876555433 3789999962
Q ss_pred ---cccC-------CCCCCCcEEE
Q 007774 396 ---AARG-------LDFPKVKCII 409 (590)
Q Consensus 396 ---~~rG-------lDip~v~~VI 409 (590)
+..+ ++..++.++|
T Consensus 176 fDyLrd~~~~~~~~~~~~~l~~lV 199 (853)
T 2fsf_A 176 FDYLRDNMAFSPEERVQRKLHYAL 199 (853)
T ss_dssp HHHHHHTTCSSGGGCCCCSCCEEE
T ss_pred HHHHHhhhhccHhHhcccCCcEEE
Confidence 1223 4556777766
No 368
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=45.13 E-value=10 Score=41.32 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=48.4
Q ss_pred ceEEEEecchhhHHHH-HHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc-cc
Q 007774 320 QKLVVFFSTCDAVDFH-YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-AA 397 (590)
Q Consensus 320 ~k~iVF~~t~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv-~~ 397 (590)
.++||.+++...+... ++.+...... ++.+..+||+.+..++...+. +..+|+|||.- +.
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~--------------~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~ 118 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKK--------------WYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILE 118 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTT--------------TSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCc--------------CceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHH
Confidence 7899999999998888 8888775211 378999999987765543332 56899999853 22
Q ss_pred -----------cCCCCCCCcEEEE
Q 007774 398 -----------RGLDFPKVKCIIQ 410 (590)
Q Consensus 398 -----------rGlDip~v~~VI~ 410 (590)
..+.+.++++||.
T Consensus 119 ~~l~~~~~~~~~~~~~~~~~lvVi 142 (699)
T 4gl2_A 119 NSLLNLENGEDAGVQLSDFSLIII 142 (699)
T ss_dssp HHTC--------CCCGGGCSEEEE
T ss_pred HHHhccccccccceecccCcEEEE
Confidence 1346667888774
No 369
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=45.06 E-value=53 Score=36.35 Aligned_cols=72 Identities=10% Similarity=0.062 Sum_probs=52.7
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc-c-
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-A- 396 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv-~- 396 (590)
+..++|.++|++.|...++.+..+. .+.++.+..+.|+++..+|.... ..+|+++|+- +
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~-------------~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlg 184 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIF-------------EFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELG 184 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHH-------------HHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHH-------------hhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhh
Confidence 5689999999999998888776652 13488899999999887665543 3689999962 1
Q ss_pred ----c-------cCCCCCCCcEEE
Q 007774 397 ----A-------RGLDFPKVKCII 409 (590)
Q Consensus 397 ----~-------rGlDip~v~~VI 409 (590)
. ..++...+.++|
T Consensus 185 fD~L~D~m~~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 185 FDYLRDNMVLYKEQMVQRPLHFAV 208 (844)
T ss_dssp HHHHHHTTCSSGGGCCCCCCCEEE
T ss_pred HHHHHHhhhcchhhhcccCCCEEE
Confidence 1 235667777766
No 370
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.05 E-value=17 Score=46.56 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCCcHHHHH-HH---HHHhcCCcEEEEccCcchHHHHHHH
Q 007774 27 STLCDQLRERLGFEAPTKVQAQ-AI---PVILSGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 27 ~~l~~~l~~~~g~~~~t~~Q~~-~i---~~il~g~dvlv~a~TGsGKTl~~l~ 75 (590)
+.+.+.+ +.+|+. +++.+.. ++ ..+.....+++.||||||||.++-+
T Consensus 875 ~ai~~~~-~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 875 KKIQEIA-KQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHH-HHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHH-HHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 3444555 356887 6665543 33 2234466799999999999988754
No 371
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=44.92 E-value=8.3 Score=33.95 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.9
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
+.-+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446899999999999754
No 372
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=44.52 E-value=15 Score=32.21 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=15.8
Q ss_pred cEEEEccCcchHHHHHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pil~~l 81 (590)
-+++.++.|||||.. +-.++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 478999999999953 33344444
No 373
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=44.29 E-value=11 Score=33.93 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=16.4
Q ss_pred HHhcCCcEEEEccCcchHHHHH
Q 007774 52 VILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 52 ~il~g~dvlv~a~TGsGKTl~~ 73 (590)
.+-.|.-+.+.+|+|||||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999643
No 374
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.19 E-value=11 Score=34.54 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=16.0
Q ss_pred HhcCCcEEEEccCcchHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVA 72 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~ 72 (590)
+-.|+-+++.+|.|||||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34678899999999999964
No 375
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=44.15 E-value=20 Score=34.58 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=14.4
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
-+++.+++|+|||.....
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 478999999999965544
No 376
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=44.05 E-value=11 Score=33.30 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=15.7
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.+.-+++.+++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999654
No 377
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=43.83 E-value=10 Score=32.14 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.9
Q ss_pred cEEEEccCcchHHHH
Q 007774 58 HVLVNAATGTGKTVA 72 (590)
Q Consensus 58 dvlv~a~TGsGKTl~ 72 (590)
-.++.+|+|||||-.
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368999999999965
No 378
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=43.74 E-value=9.9 Score=33.91 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.5
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
+-+++.|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999654
No 379
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=43.70 E-value=14 Score=36.40 Aligned_cols=45 Identities=11% Similarity=-0.106 Sum_probs=26.3
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
|.-+++.+++|||||...+-.+........ . ...+..++++.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~--~-gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGA--G-GYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBT--T-TBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccc--c-CCCCCeEEEEECCC
Confidence 345799999999999765554443222100 0 01345677776543
No 380
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=43.57 E-value=11 Score=32.49 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=15.5
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
.++++.++.|||||...-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999975533
No 381
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=43.48 E-value=32 Score=39.03 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=57.0
Q ss_pred CCChHHHHHHHHHhhhcccC---CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHH
Q 007774 299 CGSRLAVLLSILKHLFDTEV---SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (590)
Q Consensus 299 ~~~k~~~L~~~l~~~~~~~~---~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R 375 (590)
...|.......+...+.... +.++||.+++...+...+..+..... ..++.+..+||+.+...+
T Consensus 273 GsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~-------------~~~~~v~~~~G~~~~~~~ 339 (936)
T 4a2w_A 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-------------RQGYSVQGISGENFSNVS 339 (936)
T ss_dssp TSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH-------------TTTCCEEEECCC-----C
T ss_pred CchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc-------------ccCceEEEEECCcchhhH
Confidence 35666554444544443222 67899999999999888887776521 116789999999866544
Q ss_pred HHHHHHhhccCccEEEeccc-----cccC-C-CCCCCcEEEE
Q 007774 376 RTTFGAFKTEKKALLLSTDV-----AARG-L-DFPKVKCIIQ 410 (590)
Q Consensus 376 ~~~~~~F~~~~~~vLiaTdv-----~~rG-l-Dip~v~~VI~ 410 (590)
...+. ...+|+|+|.- +.++ + .+.++++||.
T Consensus 340 ~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 340 VEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp CHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred HHHhc----cCCCEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 32221 24689999853 2222 3 4566788774
No 382
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=43.47 E-value=11 Score=32.65 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=13.9
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+++.++.|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999654
No 383
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=43.37 E-value=23 Score=34.09 Aligned_cols=19 Identities=47% Similarity=0.642 Sum_probs=15.0
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
|.-+.+.+|+|||||...-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567899999999996443
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=43.35 E-value=11 Score=34.11 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.4
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
+..+++.+++|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999996543
No 385
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=43.33 E-value=12 Score=32.71 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=14.7
Q ss_pred CcEEEEccCcchHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l 74 (590)
..+++.+++|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999997543
No 386
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=43.12 E-value=9.4 Score=34.14 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.5
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556899999999999654
No 387
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=43.06 E-value=13 Score=36.31 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=15.5
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
..+++.+|+|+|||..+-+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5799999999999965433
No 388
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=42.97 E-value=8.9 Score=35.15 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=11.9
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|.-+.+.+|+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777899999999999643
No 389
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=42.61 E-value=12 Score=32.22 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.3
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
+.+++.+++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999754
No 390
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=42.17 E-value=11 Score=34.42 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.1
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
+..+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 391
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=42.13 E-value=53 Score=32.90 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHh---cCCcEEEEccCcchHHHHH
Q 007774 42 PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 42 ~t~~Q~~~i~~il---~g~dvlv~a~TGsGKTl~~ 73 (590)
|-..-.++|..++ .|..+.+.+++|+|||...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 4455566777665 5889999999999999644
No 392
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=42.00 E-value=11 Score=33.97 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=14.4
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
.+++.|++|||||...-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975433
No 393
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=41.95 E-value=10 Score=33.79 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.7
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|.-+.+.++.|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667899999999999654
No 394
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=41.93 E-value=12 Score=35.54 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=20.3
Q ss_pred HhcCCcEEEEccCcchHHHHHHHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVAYLAPII 78 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~~l~pil 78 (590)
+..|.-+++.+++|+|||......+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 55778899999999999976555443
No 395
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=41.89 E-value=81 Score=24.60 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=37.8
Q ss_pred EEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCcc
Q 007774 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA 388 (590)
Q Consensus 322 ~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~ 388 (590)
.+||.+..+....+..-++.- |..+..+.++...+.|.+-++.|.+...+
T Consensus 5 fvvfssdpeilkeivreikrq-----------------gvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQ-----------------GVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----------------TCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhC-----------------CeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 456777666666665555554 88999999999999999999999865443
No 396
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=41.76 E-value=67 Score=37.93 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.0
Q ss_pred CceeEEEEechhhhhhcCchHHHHHHHHHhcc
Q 007774 168 TNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (590)
Q Consensus 168 ~~l~~lVlDEah~ll~~gf~~~l~~il~~l~~ 199 (590)
++-+++|+||+=.-+|..-+..+...+..+.+
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~ 602 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAK 602 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence 46678999999999998878888887777654
No 397
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=41.69 E-value=14 Score=40.90 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.6
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
..++++.||+|+|||...-.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45899999999999976543
No 398
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=41.65 E-value=11 Score=33.03 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=13.8
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
.-+++.+|+|||||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34789999999999644
No 399
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=41.55 E-value=9.8 Score=36.44 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.2
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
.-+++.|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999644
No 400
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=41.47 E-value=12 Score=36.51 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=18.0
Q ss_pred cCCcEEEEccCcchHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPII 78 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil 78 (590)
.|+-+++.+|+|+|||...+..+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456679999999999975554443
No 401
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.46 E-value=22 Score=34.70 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=14.4
Q ss_pred EEEEccCcchHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLA 75 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~ 75 (590)
+++.||+|+|||.....
T Consensus 49 ~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp EEEECSSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999975543
No 402
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=41.42 E-value=6.8 Score=35.20 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=16.6
Q ss_pred HHhcCCcEEEEccCcchHHHHH
Q 007774 52 VILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 52 ~il~g~dvlv~a~TGsGKTl~~ 73 (590)
.+..+.-+.+.+++|||||...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 3445567889999999999643
No 403
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=41.24 E-value=11 Score=33.03 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.8
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+++.+++|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 404
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=41.18 E-value=11 Score=32.84 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.3
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|.-+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999643
No 405
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=41.10 E-value=24 Score=34.30 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=14.3
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
-+++.+++|+|||.....
T Consensus 107 vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478889999999976544
No 406
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=41.04 E-value=49 Score=36.93 Aligned_cols=57 Identities=9% Similarity=-0.013 Sum_probs=45.6
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecc
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD 394 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTd 394 (590)
+..++|.++|...+...++.+..+.. +.++.+..+.|+++..+|.... ..+|+++|.
T Consensus 120 G~qv~VvTPTreLA~Qdae~m~~l~~-------------~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 120 GKGVHVVTVNDYLARRDAEWMGPVYR-------------GLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp CSCCEEEESSHHHHHHHHHHHHHHHH-------------TTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHH-------------hcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 56899999999999998888876531 3378899999999987776654 378999995
No 407
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=41.00 E-value=11 Score=47.66 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.8
Q ss_pred HhcCCcEEEEccCcchHHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~~ 73 (590)
+..++.+++.||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 346889999999999999754
No 408
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=40.86 E-value=34 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=31.9
Q ss_pred cCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCCh
Q 007774 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQ 372 (590)
Q Consensus 317 ~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~ 372 (590)
....+++|+|.+...+...+..|... |+.++.|.|++..
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~-----------------G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQL-----------------GLNIVDVEGGIQS 91 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTT-----------------TCCEEEETTHHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHc-----------------CCCEEEEcCcHHH
Confidence 34578999999988888888888877 6688999998754
No 409
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=40.80 E-value=11 Score=33.01 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.4
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999644
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=40.78 E-value=13 Score=33.77 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.5
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
+..+++.|++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999997543
No 411
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=40.72 E-value=59 Score=36.23 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=52.6
Q ss_pred CceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEecccc--
Q 007774 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA-- 396 (590)
Q Consensus 319 ~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv~-- 396 (590)
+..++|.++|+..+...++.+..+. .+.++.+..+.|+++..+|.... ..+|+++|+--
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~-------------~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlg 212 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVH-------------RFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFG 212 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHH-------------HHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHH-------------hhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhh
Confidence 5689999999999988888776652 13488999999999987766544 36899999621
Q ss_pred ----cc-------CCCCCCCcEEE
Q 007774 397 ----AR-------GLDFPKVKCII 409 (590)
Q Consensus 397 ----~r-------GlDip~v~~VI 409 (590)
.. .++..+++++|
T Consensus 213 fDyLrD~m~~~~~~l~lr~l~~lI 236 (922)
T 1nkt_A 213 FDYLRDNMAHSLDDLVQRGHHYAI 236 (922)
T ss_dssp HHHHHHTTCSSGGGCCCCCCCEEE
T ss_pred HHHHHhhhhccHhhhccCCCCEEE
Confidence 11 35556777666
No 412
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=40.51 E-value=12 Score=33.74 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.0
Q ss_pred cEEEEccCcchHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYL 74 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l 74 (590)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 413
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=39.95 E-value=1.7e+02 Score=31.57 Aligned_cols=103 Identities=9% Similarity=0.088 Sum_probs=61.6
Q ss_pred eEEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCC--Ch-hH---HHhhhcCcceEe
Q 007774 292 QRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ--PD-ME---LKQLFLRCKTFR 365 (590)
Q Consensus 292 ~~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~--~~-~~---~~~~~~~~~v~~ 365 (590)
+...-++...|...+..++... +.++||.+++...+..++.-|+.+....... .. .+ .....|...++
T Consensus 31 ~~l~g~tgs~kt~~~a~~~~~~-----~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~- 104 (664)
T 1c4o_A 31 VTLLGATGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLY- 104 (664)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEE-
T ss_pred EEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhh-
Confidence 3455667788887777777653 4689999999999999999998773211000 00 00 00000122221
Q ss_pred ccCCCC-----hHHHHHHHHHhhccCccEEEeccccccCC
Q 007774 366 LHGNMK-----QEDRRTTFGAFKTEKKALLLSTDVAARGL 400 (590)
Q Consensus 366 lhg~~~-----~~~R~~~~~~F~~~~~~vLiaTdv~~rGl 400 (590)
.|...+ ...|..++.....+...|+|+|-.+-.|+
T Consensus 105 ~~~~~~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 105 IEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred hhhhcccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 223332 45788899998877666777775544554
No 414
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=39.91 E-value=12 Score=32.88 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=15.9
Q ss_pred cCCcEEEEccCcchHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l 74 (590)
.|.-+++.++.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35568999999999996543
No 415
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=39.75 E-value=14 Score=32.29 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=12.9
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999644
No 416
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=39.68 E-value=40 Score=34.56 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=54.9
Q ss_pred CCChHHH-HHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHH
Q 007774 299 CGSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (590)
Q Consensus 299 ~~~k~~~-L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~ 377 (590)
...|... +..++..........++||.++++..+..++..+..+... .++..+....++.....
T Consensus 141 GsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~--- 205 (479)
T 3fmp_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF------------YPELKLAYAVRGNKLER--- 205 (479)
T ss_dssp SSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTT------------STTCCEEEESTTCCCCT---
T ss_pred CCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhh------------CCCceEEEEeCCccccc---
Confidence 3456554 4444444332233348999999999999888877765321 12444544444433211
Q ss_pred HHHHhhccCccEEEeccccc-------cCCCCCCCcEEEE
Q 007774 378 TFGAFKTEKKALLLSTDVAA-------RGLDFPKVKCIIQ 410 (590)
Q Consensus 378 ~~~~F~~~~~~vLiaTdv~~-------rGlDip~v~~VI~ 410 (590)
.......|+|+|.-.- ..+++.++++||.
T Consensus 206 ----~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 206 ----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp ----TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred ----cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 1123558999996432 3577788988884
No 417
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=39.46 E-value=12 Score=33.97 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=16.5
Q ss_pred cCCcEEEEccCcchHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~ 75 (590)
.|.-+.+.+|+|||||.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456789999999999964433
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=39.44 E-value=14 Score=33.96 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=16.1
Q ss_pred cCCcEEEEccCcchHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l 74 (590)
.+..+++.+++|||||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34679999999999996543
No 419
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=39.36 E-value=15 Score=34.13 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.9
Q ss_pred cCCcEEEEccCcchHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l 74 (590)
.+..+++.++.|||||...-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34569999999999996543
No 420
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=39.23 E-value=13 Score=33.07 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.7
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999644
No 421
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=39.09 E-value=33 Score=41.26 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=29.1
Q ss_pred CCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcH
Q 007774 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~Ptr 103 (590)
|+.+++.+++|||||...+-.+.+.+.. |..++++.-..
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~---------G~~vlYI~te~ 72 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEH 72 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhC---------CCceEEEEecC
Confidence 6789999999999998776666665532 45578877553
No 422
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=38.79 E-value=13 Score=31.70 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=13.5
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999654
No 423
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=38.71 E-value=12 Score=37.32 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.5
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
=.++.|+||+|||...
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999753
No 424
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=38.45 E-value=39 Score=34.47 Aligned_cols=68 Identities=12% Similarity=-0.026 Sum_probs=44.0
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcC-CCcEEEECChHHHHHHhccCCCCCCcee
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLR 171 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~~~~~l~ 171 (590)
+.++||.+||+.-|.++++.+... ...+..+.|... ......++. ..+|+|+|- .+. ..+++.. +
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~--~GiDip~-~ 253 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE--MGANFRA-G 253 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG--SSCCCCC-S
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH--hCcCCCC-C
Confidence 347999999999999988888653 234455555443 333344444 489999992 333 4556666 6
Q ss_pred EEE
Q 007774 172 WII 174 (590)
Q Consensus 172 ~lV 174 (590)
+||
T Consensus 254 ~VI 256 (451)
T 2jlq_A 254 RVI 256 (451)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 425
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=38.44 E-value=13 Score=37.02 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.7
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-.+|.+|||||||-.+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999655
No 426
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=38.43 E-value=11 Score=33.83 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.6
Q ss_pred cCCcEEEEccCcchHHHH
Q 007774 55 SGRHVLVNAATGTGKTVA 72 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~ 72 (590)
.|.-+.|.+|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355688999999999953
No 427
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=38.40 E-value=24 Score=37.74 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=18.9
Q ss_pred HHHhcCCcEEEEccCcchHHHHH
Q 007774 51 PVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 51 ~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
..+..|..+++.+|+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34557889999999999999654
No 428
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=38.23 E-value=20 Score=34.72 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=12.2
Q ss_pred EEEEccCcchHHHH
Q 007774 59 VLVNAATGTGKTVA 72 (590)
Q Consensus 59 vlv~a~TGsGKTl~ 72 (590)
+++.++.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68999999999963
No 429
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=38.14 E-value=14 Score=33.57 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=14.2
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
..+.+.+++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999644
No 430
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=38.04 E-value=18 Score=31.46 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.3
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-.++.+++|||||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999643
No 431
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=37.82 E-value=27 Score=42.77 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=33.6
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 110 (590)
.|+++++.+++|+|||...+..+.+... .|..++++.= -++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k---------~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---------cCCeEEEEEc-cccHHHHH
Confidence 5789999999999999887776766653 3566777764 34545555
No 432
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=37.78 E-value=12 Score=33.47 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=13.9
Q ss_pred CCcEEEEccCcchHHHH
Q 007774 56 GRHVLVNAATGTGKTVA 72 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~ 72 (590)
|.-+.+.+++|||||..
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44578999999999964
No 433
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=37.52 E-value=15 Score=32.89 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=16.0
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667999999999999754
No 434
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=37.49 E-value=15 Score=33.30 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=14.9
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
+..+++.+++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999654
No 435
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=37.35 E-value=18 Score=34.98 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.6
Q ss_pred cCCcEEEEccCcchHHHH
Q 007774 55 SGRHVLVNAATGTGKTVA 72 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~ 72 (590)
.|.-+.|.+|+|||||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577899999999999953
No 436
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=37.32 E-value=14 Score=38.61 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=30.2
Q ss_pred ccCCccCCCCCHHHHHHHHHhCC-CCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHH
Q 007774 16 ASCSFSSLGLHSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 16 ~~~~f~~l~l~~~l~~~l~~~~g-~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
...+|+++.-.+.....+.+-.. +..+..++.-. +.-.+.+++.+|+|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg---~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG---ARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTS---CCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhcc---CCCCceEEEECCCCCCHHHHH
Confidence 56689998766666666643100 11111000000 001245999999999999754
No 437
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=37.30 E-value=12 Score=34.68 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.9
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|.|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778999999999995
No 438
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=37.26 E-value=14 Score=34.60 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 007774 510 KLAKDAFCSWVRAYTAHR 527 (590)
Q Consensus 510 ~~a~~a~~s~~r~y~~~~ 527 (590)
+.....|+.||.+|-+|.
T Consensus 239 ~~~~~~f~~~l~~~~~~~ 256 (260)
T 3a4m_A 239 DRVLKEFKDLLNSYLEHH 256 (260)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 566888999999988775
No 439
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=37.08 E-value=12 Score=32.64 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=11.5
Q ss_pred cCCcEEEEccCcchHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l 74 (590)
.+.-+++.++.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568999999999997543
No 440
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=37.07 E-value=15 Score=32.82 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=15.9
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.+.-+++.++.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667999999999999654
No 441
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=37.01 E-value=15 Score=32.58 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=13.3
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999643
No 442
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=36.74 E-value=14 Score=32.86 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.4
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+.+.++.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999643
No 443
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=36.47 E-value=20 Score=31.36 Aligned_cols=15 Identities=27% Similarity=0.632 Sum_probs=12.8
Q ss_pred cEEEEccCcchHHHH
Q 007774 58 HVLVNAATGTGKTVA 72 (590)
Q Consensus 58 dvlv~a~TGsGKTl~ 72 (590)
.+.+.+|.|||||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999964
No 444
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=36.46 E-value=23 Score=31.44 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=14.6
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
|.-+.+.+++|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 346789999999999654
No 445
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=36.43 E-value=28 Score=32.70 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=30.2
Q ss_pred cCCcEEEEccCcchHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEcCcHHHHHHHHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~pil~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 116 (590)
.|..+++.+.+|+|||...+-.+.+.+. .|-++++++-. |-..|+...+..+
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~---------~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLK---------SDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHH---------TTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHH---------CCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 3566788878888888333333444443 25567776643 4455555555543
No 446
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=36.42 E-value=69 Score=34.59 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=50.8
Q ss_pred ceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHHHHhhccCccEEEeccc----
Q 007774 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV---- 395 (590)
Q Consensus 320 ~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~~~F~~~~~~vLiaTdv---- 395 (590)
.++||.+++...+...++.+...... .++.+..++|+.+...+...+. ...+|+|||.-
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~-------------~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~ 124 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFER-------------HGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVN 124 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTT-------------TTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhcc-------------CCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHH
Confidence 78999999999888888877765211 2678889999986544332221 25789999952
Q ss_pred -cccC-C-CCCCCcEEEE
Q 007774 396 -AARG-L-DFPKVKCIIQ 410 (590)
Q Consensus 396 -~~rG-l-Dip~v~~VI~ 410 (590)
+..| + ++.++++||.
T Consensus 125 ~l~~~~~~~l~~~~~vVi 142 (696)
T 2ykg_A 125 NLKKGTIPSLSIFTLMIF 142 (696)
T ss_dssp HHHTTSSCCGGGCSEEEE
T ss_pred HHhcCcccccccccEEEE
Confidence 2333 3 5667888875
No 447
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=36.29 E-value=12 Score=34.56 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.0
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|.|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999995
No 448
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=36.22 E-value=15 Score=32.11 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.3
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999654
No 449
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=36.13 E-value=15 Score=32.70 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.2
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999643
No 450
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=35.92 E-value=43 Score=36.90 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=37.9
Q ss_pred cccCCccCC-CC-CHHHHHHHHHhCCCCC--C--cHHHHHHHHHHhc---CCcEEEEccCcchHHHHHHH
Q 007774 15 FASCSFSSL-GL-HSTLCDQLRERLGFEA--P--TKVQAQAIPVILS---GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 15 ~~~~~f~~l-~l-~~~l~~~l~~~~g~~~--~--t~~Q~~~i~~il~---g~dvlv~a~TGsGKTl~~l~ 75 (590)
.+-++|..+ ++ ++..+.....+ .... | +.+=..|+..++. +..+||.+..|+|||.+.=.
T Consensus 91 iaVNPyk~l~~iY~~~~~~~Y~g~-~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~ 159 (784)
T 2v26_A 91 IAVNPYFDIPKIYSSETIKSYQGK-SLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 159 (784)
T ss_dssp EEECCSSCCTTTTSHHHHHHHTTC-CTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred EEecCCcCcCCCCCHHHHHHHhCC-CcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHH
Confidence 456788888 56 45555555322 2222 2 4555566666553 34689999999999987544
No 451
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=35.91 E-value=38 Score=32.04 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=15.2
Q ss_pred HHhc-CCc--EEEEccCcchHHH
Q 007774 52 VILS-GRH--VLVNAATGTGKTV 71 (590)
Q Consensus 52 ~il~-g~d--vlv~a~TGsGKTl 71 (590)
..+. |.| ++..++||||||.
T Consensus 86 scLd~GyNvcIfSyGQTGsGKT~ 108 (298)
T 2o0a_A 86 MCLNQKKNFNLISLSTTPHGSLR 108 (298)
T ss_dssp HHHHTTCCEEEEEECSSCCHHHH
T ss_pred HHHhCCCceEEEEECCCCCCccH
Confidence 3455 766 5889999999993
No 452
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=35.82 E-value=12 Score=34.90 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=14.7
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
+..+++.|++|||||...
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999644
No 453
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=35.78 E-value=28 Score=35.77 Aligned_cols=53 Identities=8% Similarity=0.011 Sum_probs=36.3
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhcC-CCcEEEEC
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVAT 151 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~IlV~T 151 (590)
+.++||.+||+.-+..+++.+... ...+..+.|.. .......++. ..+|+|||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTC-CCCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHH-HHHHHhhccCCCceEEEEC
Confidence 457999999999999999888764 23455565543 2222333443 48999999
No 454
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=35.64 E-value=40 Score=38.98 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChHHHHHHH
Q 007774 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (590)
Q Consensus 300 ~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~~R~~~~ 379 (590)
..|.......+...+ ..+.+++|.++++..+...+..+.... + .+..++|+++.
T Consensus 210 SGKTlva~l~i~~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~----------------~-~VglltGd~~~------- 263 (1108)
T 3l9o_A 210 AGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEF----------------G-DVGLMTGDITI------- 263 (1108)
T ss_dssp SHHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHT----------------S-SEEEECSSCBC-------
T ss_pred CChHHHHHHHHHHHH--hcCCeEEEEcCcHHHHHHHHHHHHHHh----------------C-CccEEeCcccc-------
Confidence 455544333333322 346799999999999999999888752 2 57778998873
Q ss_pred HHhhccCccEEEec-----cccccCCC-CCCCcEEEE
Q 007774 380 GAFKTEKKALLLST-----DVAARGLD-FPKVKCIIQ 410 (590)
Q Consensus 380 ~~F~~~~~~vLiaT-----dv~~rGlD-ip~v~~VI~ 410 (590)
++...|+|+| +.+.+|-. +.++++||.
T Consensus 264 ----~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 264 ----NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIF 296 (1108)
T ss_dssp ----CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEE
T ss_pred ----CCCCCEEEeChHHHHHHHHcCccccccCCEEEE
Confidence 3568899999 35555533 567888875
No 455
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=35.36 E-value=25 Score=27.54 Aligned_cols=37 Identities=8% Similarity=0.018 Sum_probs=29.9
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCC
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMK 371 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~ 371 (590)
...+++|+|.+...+...+..|... |+.++.+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~-----------------G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN-----------------GIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT-----------------TCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc-----------------CCCEEEecChHH
Confidence 4578999999988888888888877 667777888764
No 456
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=35.17 E-value=15 Score=33.00 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=13.5
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+++.+++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 457
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=35.14 E-value=23 Score=36.03 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=15.7
Q ss_pred cEEEEccCcchHHHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLAPI 77 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~pi 77 (590)
.+++.+++|+|||....-.+
T Consensus 101 vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999997654433
No 458
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=34.93 E-value=17 Score=31.98 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=15.6
Q ss_pred EEEEccCcchHHHHHHHHHHHHH
Q 007774 59 VLVNAATGTGKTVAYLAPIINHL 81 (590)
Q Consensus 59 vlv~a~TGsGKTl~~l~pil~~l 81 (590)
+++.|+.|||||...-. +.+.+
T Consensus 3 I~l~G~~GsGKsT~~~~-L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL-LAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 68999999999975433 33444
No 459
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=34.41 E-value=16 Score=40.52 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=30.3
Q ss_pred ccccCCccCCCCCHHHHHHHHHh--CCCCCCcHHHHHHHHHHhcCCcEEEEccCcchHHHHH
Q 007774 14 IFASCSFSSLGLHSTLCDQLRER--LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 14 ~~~~~~f~~l~l~~~l~~~l~~~--~g~~~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
.....+|++++=-+...+.|.+. +.+..|-.++...+ ...+.+|+.+|+|+|||+.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~---~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV---KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC---CCCCEEEEECCTTSCHHHHH
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC---CCCCeEEEECCCCCCHHHHH
Confidence 34556888885323333344331 12222322222111 12367999999999999754
No 460
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=34.28 E-value=15 Score=41.00 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=16.2
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.++.+++.+|+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999644
No 461
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=34.26 E-value=15 Score=33.48 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=15.1
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|.|||||.
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999995
No 462
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=34.10 E-value=17 Score=33.04 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=13.5
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 463
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=34.02 E-value=30 Score=26.71 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=30.9
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCCh
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQ 372 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~ 372 (590)
+..+++|+|.+-..+...+..|... |+.++.+.|++..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~-----------------G~~v~~l~GG~~~ 92 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQN-----------------GVNAVNVEGGMDE 92 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT-----------------TCEEEEETTHHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHC-----------------CCCEEEecccHHH
Confidence 4579999999988888888888876 6688889998743
No 464
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=33.92 E-value=16 Score=32.23 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=13.6
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
.+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999644
No 465
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=33.91 E-value=33 Score=26.05 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=29.6
Q ss_pred ceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCCh
Q 007774 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQ 372 (590)
Q Consensus 320 ~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~ 372 (590)
.+++|+|.+-..+...+..|... |+.++.+.|++..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~-----------------G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE-----------------GYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH-----------------TCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHc-----------------CCcEEEEcccHHH
Confidence 78999999988888888888877 5668888998754
No 466
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=33.73 E-value=48 Score=35.50 Aligned_cols=68 Identities=12% Similarity=-0.017 Sum_probs=43.8
Q ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEEcCCchHHHHHHhc-CCCcEEEECChHHHHHHhccCCCCCCcee
Q 007774 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLR 171 (590)
Q Consensus 93 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~~~~~l~ 171 (590)
+.++||.+||+.-|..+++.+... ...+..++|. ......+.++ ...+|+|+|. .+. ..+++. ++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~--rGiDi~-v~ 420 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISE--MGANFR-AG 420 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGG--TTCCCC-CS
T ss_pred CCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHH--cCcccC-ce
Confidence 457999999999999999888764 2345556654 3333333333 4589999993 333 345554 66
Q ss_pred EEE
Q 007774 172 WII 174 (590)
Q Consensus 172 ~lV 174 (590)
+||
T Consensus 421 ~VI 423 (618)
T 2whx_A 421 RVI 423 (618)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 467
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=33.57 E-value=48 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=29.1
Q ss_pred ceEEEEe-cchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCChH
Q 007774 320 QKLVVFF-STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQE 373 (590)
Q Consensus 320 ~k~iVF~-~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~~ 373 (590)
.++||+| .+-..+...+..|... |+.+..|.|++..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~-----------------G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSL-----------------GVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHT-----------------TCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHc-----------------CCceEEEeCcHHHH
Confidence 7899999 4766677788888876 66889999988653
No 468
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=33.43 E-value=32 Score=26.86 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=30.5
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCc-ceEeccCCCCh
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC-KTFRLHGNMKQ 372 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~v~~lhg~~~~ 372 (590)
...++||+|.+...+...+..|... |+ .++.|.|++..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~-----------------G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSA-----------------GFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHT-----------------TCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHc-----------------CCcCEEEecCCHHH
Confidence 4578999999988888888888877 55 48888998754
No 469
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=33.41 E-value=17 Score=46.66 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCcchHHHH
Q 007774 53 ILSGRHVLVNAATGTGKTVA 72 (590)
Q Consensus 53 il~g~dvlv~a~TGsGKTl~ 72 (590)
+..++.++++||||+|||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 34688999999999999953
No 470
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=33.39 E-value=28 Score=26.98 Aligned_cols=37 Identities=8% Similarity=0.018 Sum_probs=30.2
Q ss_pred CCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCC
Q 007774 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMK 371 (590)
Q Consensus 318 ~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~ 371 (590)
+..+++|+|.+-..+...+..|... |+.++.+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~-----------------G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN-----------------GIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT-----------------TCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHC-----------------CCCeEEeCCCHH
Confidence 4578999999987888888888876 668888999864
No 471
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=33.39 E-value=19 Score=33.46 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.6
Q ss_pred cCCcEEEEccCcchHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~ 73 (590)
.|.-+.+.+|+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999644
No 472
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=33.36 E-value=19 Score=33.21 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=15.0
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
+.-+++.++.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467999999999999643
No 473
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=33.36 E-value=19 Score=32.54 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.0
Q ss_pred cEEEEccCcchHHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l~ 75 (590)
.+++.+|+||||+..+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999865433
No 474
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=33.23 E-value=15 Score=33.85 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=15.0
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|.|||||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999995
No 475
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=33.22 E-value=18 Score=39.99 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.1
Q ss_pred CCcEEEEccCcchHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYL 74 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l 74 (590)
+.++++.+|+|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 5689999999999997543
No 476
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.22 E-value=35 Score=35.33 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=14.6
Q ss_pred CcEEEEccCcchHHHHHHH
Q 007774 57 RHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~l~ 75 (590)
.-+.+.+++|||||...-.
T Consensus 294 eVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHH
Confidence 3478999999999965433
No 477
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=32.89 E-value=15 Score=34.53 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.1
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|.|||||.
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999995
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=32.80 E-value=19 Score=32.28 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.3
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-.++.+|+|+|||-.+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4689999999999653
No 479
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=32.69 E-value=19 Score=40.49 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=14.7
Q ss_pred cEEEEccCcchHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYL 74 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l 74 (590)
.+++.||||+|||..+-
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997654
No 480
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=32.68 E-value=19 Score=32.48 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.0
Q ss_pred CcEEEEccCcchHHHHH
Q 007774 57 RHVLVNAATGTGKTVAY 73 (590)
Q Consensus 57 ~dvlv~a~TGsGKTl~~ 73 (590)
.-+.+.++.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999743
No 481
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=32.57 E-value=1.2e+02 Score=32.06 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=50.1
Q ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhc---CCcceEEEEcCCch--HHHHHHhcCC-Cc---EEEECChHHHHHHhcc
Q 007774 92 SGTFALVLVPTRELCLQVYEILHKLLHRF---HWIVPGYVMGGENR--SKEKARLRKG-IS---ILVATPGRLLDHLKHT 162 (590)
Q Consensus 92 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~---~~~~~~~~~gg~~~--~~~~~~l~~~-~~---IlV~Tp~rl~~~l~~~ 162 (590)
.+.++||.|+++.-|..+++.+....... ....+..++|.... ....+.++.+ .+ |+|+|- .+ .
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l--~ 510 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LL--T 510 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TT--T
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hh--h
Confidence 35789999999999999999998764321 12224445555432 1222444442 22 677761 11 1
Q ss_pred CCCCCCceeEEEEechh
Q 007774 163 SSFLHTNLRWIIFDEAD 179 (590)
Q Consensus 163 ~~~~~~~l~~lVlDEah 179 (590)
..+++..+++||++..-
T Consensus 511 ~GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 511 TGVDAPTCKNVVLARVV 527 (590)
T ss_dssp TTCCCTTEEEEEEESCC
T ss_pred cCccchheeEEEEEecC
Confidence 45778899999987653
No 482
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=32.48 E-value=17 Score=40.16 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.8
Q ss_pred cEEEEccCcchHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYL 74 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l 74 (590)
.+++.+|||+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58999999999997654
No 483
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=32.35 E-value=1.8e+02 Score=33.15 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHh
Q 007774 92 SGTFALVLVPTRELCLQVYEILHKLLH 118 (590)
Q Consensus 92 ~~~~~lil~PtreLa~Q~~~~~~~~~~ 118 (590)
.+.+++|+|++++-|...++.+..+..
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~ 562 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQE 562 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhh
Confidence 456899999999999999999998863
No 484
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=32.21 E-value=40 Score=38.42 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=42.4
Q ss_pred cccCCccCCC-C-CHHHHHHHHHhCCCCC----CcHHHHHHHHHHhc---CCcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 15 FASCSFSSLG-L-HSTLCDQLRERLGFEA----PTKVQAQAIPVILS---GRHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 15 ~~~~~f~~l~-l-~~~l~~~l~~~~g~~~----~t~~Q~~~i~~il~---g~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
.+-++|..++ | ++..+.....+ .... ++.+-..|...++. +..+||.|.+|+|||.+.=. +++.|.
T Consensus 95 IaVNPyk~lp~iY~~~~~~~Y~g~-~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 95 IAVNPYFDIPKIYSSETIKSYQGK-SLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp EEECCSSCCTTTTSHHHHHHHTTC-CBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EEECCCCCccccCCHHHHHHhcCC-CCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 5567888885 6 66666666432 2222 24455666666553 34699999999999988644 444443
No 485
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=32.15 E-value=18 Score=34.90 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=15.0
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|+|||||.
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 46778999999999996
No 486
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=32.05 E-value=14 Score=31.66 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.4
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|.|+|||.
T Consensus 32 ~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SCEEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46668899999999994
No 487
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=31.92 E-value=20 Score=32.68 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=15.5
Q ss_pred cCCcEEEEccCcchHHHHHHH
Q 007774 55 SGRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl~~l~ 75 (590)
..+-+++.+|+||||+...-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345578899999999865433
No 488
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=31.61 E-value=19 Score=32.04 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=14.4
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
+.-+.+.++.|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999644
No 489
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=31.38 E-value=23 Score=34.09 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.2
Q ss_pred CCcEEEEccCcchHHHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAYLA 75 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~l~ 75 (590)
|.-+.+.+|+|||||...-.
T Consensus 100 g~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 34578999999999975433
No 490
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=31.35 E-value=15 Score=33.58 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=14.7
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|.|||||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999995
No 491
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=31.21 E-value=47 Score=32.30 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.7
Q ss_pred CCcEEEEccCcchHHHHH
Q 007774 56 GRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 56 g~dvlv~a~TGsGKTl~~ 73 (590)
|.-+.+.+|+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445799999999999644
No 492
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=30.94 E-value=14 Score=34.23 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=14.8
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|.|||||.
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678999999999995
No 493
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=30.86 E-value=22 Score=31.64 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=13.9
Q ss_pred cEEEEccCcchHHHHHH
Q 007774 58 HVLVNAATGTGKTVAYL 74 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~l 74 (590)
.+.+.+++|||||.+.-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 494
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=30.77 E-value=14 Score=31.95 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.1
Q ss_pred hcCCcEEEEccCcchHHH
Q 007774 54 LSGRHVLVNAATGTGKTV 71 (590)
Q Consensus 54 l~g~dvlv~a~TGsGKTl 71 (590)
...-.+++.+++|+|||-
T Consensus 19 ~~~~~i~v~G~~~~GKSs 36 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTT 36 (181)
T ss_dssp --CEEEEEEEETTSSHHH
T ss_pred CceeEEEEECCCCCCHHH
Confidence 344579999999999995
No 495
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=30.69 E-value=8.2 Score=43.04 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=31.5
Q ss_pred cCCccCCCCCHHHHHHHHHhCCCC--CCcHHHHHHHHHHhcCCcEEEEccCcchHHHHH
Q 007774 17 SCSFSSLGLHSTLCDQLRERLGFE--APTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73 (590)
Q Consensus 17 ~~~f~~l~l~~~l~~~l~~~~g~~--~~t~~Q~~~i~~il~g~dvlv~a~TGsGKTl~~ 73 (590)
..+|+++.-.+.+.+.|.+...+. .+..+... .+..++.+++.+|+|+|||..+
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCC---CCCCCCCCCCBCCTTSSHHHHH
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhc---CCCCCceeEEECCCCCCHHHHH
Confidence 346777766667777775432221 11110000 1124678999999999999744
No 496
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=30.29 E-value=1.2e+02 Score=26.75 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=52.6
Q ss_pred EEEEecCCChHHHHHHHHHhhhcccCCceEEEEecchhhHHHHHHhhhhccCCCCCCChhHHHhhhcCcceEeccCCCCh
Q 007774 293 RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQ 372 (590)
Q Consensus 293 ~~~~~~~~~k~~~L~~~l~~~~~~~~~~k~iVF~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~lhg~~~~ 372 (590)
.|..-+........+.+..+......-.+++|..++=+++..+++.+..+ .+-+..+|.+...
T Consensus 18 ~YF~~~G~eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i-----------------~lVvVTh~~GF~~ 80 (201)
T 1vp8_A 18 VYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGL-----------------EVVVVTYHTGFVR 80 (201)
T ss_dssp EEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTC-----------------EEEEEECCTTSSS
T ss_pred EEecCCCcccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCC-----------------eEEEEeCcCCCCC
Confidence 34444455566666666655544344568888888888998888877322 3334444444322
Q ss_pred HH----HHHHHHHhhccCccEEEeccccc
Q 007774 373 ED----RRTTFGAFKTEKKALLLSTDVAA 397 (590)
Q Consensus 373 ~~----R~~~~~~F~~~~~~vLiaTdv~~ 397 (590)
.. -.++.+.+.+....|+.+|-+++
T Consensus 81 pg~~e~~~e~~~~L~~~G~~V~t~tH~ls 109 (201)
T 1vp8_A 81 EGENTMPPEVEEELRKRGAKIVRQSHILS 109 (201)
T ss_dssp TTCCSSCHHHHHHHHHTTCEEEECCCTTT
T ss_pred CCCCcCCHHHHHHHHhCCCEEEEEecccc
Confidence 11 13455666677777888777653
No 497
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=30.23 E-value=22 Score=34.07 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=13.2
Q ss_pred cEEEEccCcchHHHHH
Q 007774 58 HVLVNAATGTGKTVAY 73 (590)
Q Consensus 58 dvlv~a~TGsGKTl~~ 73 (590)
-+.|.|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999643
No 498
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=30.20 E-value=46 Score=36.10 Aligned_cols=68 Identities=19% Similarity=0.313 Sum_probs=40.7
Q ss_pred ccccCCccCCCCC-HHHHHHHHHhCCCC---CCcHHHHHHHHHHhc---CCcEEEEccCcchHHHHHHHHHHHHHh
Q 007774 14 IFASCSFSSLGLH-STLCDQLRERLGFE---APTKVQAQAIPVILS---GRHVLVNAATGTGKTVAYLAPIINHLQ 82 (590)
Q Consensus 14 ~~~~~~f~~l~l~-~~l~~~l~~~~g~~---~~t~~Q~~~i~~il~---g~dvlv~a~TGsGKTl~~l~pil~~l~ 82 (590)
+.+-++|..+++. +..+.....+-..+ ..+.+=..|+..++. +..+||.+..|+|||.+.=. +++.|.
T Consensus 45 LiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~-i~~yla 119 (697)
T 1lkx_A 45 VISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKK-IMQFLT 119 (697)
T ss_dssp EEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH-HHHHHH
Confidence 3556789988874 55555553221111 223455566665553 34699999999999988544 344443
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=30.20 E-value=20 Score=33.53 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.9
Q ss_pred cCCcEEEEccCcchHHH
Q 007774 55 SGRHVLVNAATGTGKTV 71 (590)
Q Consensus 55 ~g~dvlv~a~TGsGKTl 71 (590)
.|.-+.+.+|.|||||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999995
No 500
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.19 E-value=37 Score=33.88 Aligned_cols=30 Identities=10% Similarity=0.013 Sum_probs=22.4
Q ss_pred eeEEEEechhhhhhc---CchHHHHHHHHHhcc
Q 007774 170 LRWIIFDEADRILEL---GFGKEIEEILDILGS 199 (590)
Q Consensus 170 l~~lVlDEah~ll~~---gf~~~l~~il~~l~~ 199 (590)
-.++|+||||.+++. .+...+..+++...+
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk 295 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK 295 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh
Confidence 457999999999863 355667777777764
Done!