Query 007775
Match_columns 590
No_of_seqs 1158 out of 3553
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 15:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4162 Predicted calmodulin-b 100.0 1.5E-52 3.2E-57 399.5 49.6 582 1-590 165-793 (799)
2 KOG4626 O-linked N-acetylgluco 100.0 4E-48 8.7E-53 359.3 33.0 385 153-587 108-492 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 1.8E-46 3.8E-51 348.4 33.0 359 158-563 147-505 (966)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-39 3.8E-44 358.2 53.4 518 10-587 329-873 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 5E-38 1.1E-42 346.6 56.9 499 10-584 227-736 (899)
6 PRK11447 cellulose synthase su 100.0 2.8E-36 6E-41 332.1 58.2 510 10-580 62-740 (1157)
7 PRK11447 cellulose synthase su 100.0 2.9E-35 6.4E-40 324.0 56.7 502 12-555 114-755 (1157)
8 TIGR00990 3a0801s09 mitochondr 100.0 1.8E-35 4E-40 306.4 47.7 412 62-584 126-575 (615)
9 TIGR00990 3a0801s09 mitochondr 100.0 9.5E-33 2.1E-37 286.2 50.8 447 5-549 122-577 (615)
10 KOG2002 TPR-containing nuclear 100.0 2.3E-33 5.1E-38 274.9 40.1 513 9-589 163-754 (1018)
11 PRK09782 bacteriophage N4 rece 100.0 2E-31 4.3E-36 280.2 52.3 504 9-589 43-715 (987)
12 KOG2002 TPR-containing nuclear 100.0 4.1E-31 8.8E-36 259.3 44.4 481 26-581 146-710 (1018)
13 PRK15174 Vi polysaccharide exp 100.0 6.9E-32 1.5E-36 278.2 40.8 338 164-548 45-386 (656)
14 PRK15174 Vi polysaccharide exp 100.0 2.4E-31 5.2E-36 274.2 41.6 346 194-589 41-390 (656)
15 PLN03077 Protein ECB2; Provisi 100.0 9.5E-30 2.1E-34 274.3 47.6 457 14-579 226-719 (857)
16 PRK09782 bacteriophage N4 rece 100.0 1.8E-28 3.9E-33 257.9 51.0 361 174-585 355-745 (987)
17 PRK10049 pgaA outer membrane p 100.0 6.3E-29 1.4E-33 262.0 42.9 407 129-587 22-463 (765)
18 PLN03081 pentatricopeptide (PP 100.0 1.7E-28 3.7E-33 258.3 44.8 437 66-580 90-557 (697)
19 PRK10049 pgaA outer membrane p 100.0 4.9E-28 1.1E-32 255.3 43.2 431 71-552 23-465 (765)
20 PLN03077 Protein ECB2; Provisi 100.0 1.1E-27 2.5E-32 258.3 42.4 430 66-585 155-623 (857)
21 KOG0547 Translocase of outer m 100.0 5.4E-28 1.2E-32 219.9 33.3 386 163-582 117-568 (606)
22 PLN03081 pentatricopeptide (PP 100.0 7.8E-27 1.7E-31 245.8 45.5 491 17-580 94-597 (697)
23 KOG0547 Translocase of outer m 100.0 7.8E-27 1.7E-31 212.4 37.3 240 270-548 325-571 (606)
24 PLN03218 maturation of RBCL 1; 100.0 7.6E-25 1.6E-29 232.3 55.9 366 70-508 413-784 (1060)
25 PLN03218 maturation of RBCL 1; 100.0 5.5E-25 1.2E-29 233.4 51.2 408 71-554 378-795 (1060)
26 KOG1126 DNA-binding cell divis 100.0 9.1E-28 2E-32 227.6 25.6 290 248-584 335-624 (638)
27 KOG1155 Anaphase-promoting com 100.0 8.8E-25 1.9E-29 197.9 41.9 450 61-582 76-538 (559)
28 KOG1126 DNA-binding cell divis 100.0 2.9E-27 6.4E-32 224.2 24.8 306 163-513 319-626 (638)
29 PRK11788 tetratricopeptide rep 100.0 1.1E-24 2.5E-29 215.1 36.3 306 195-542 35-346 (389)
30 KOG1155 Anaphase-promoting com 99.9 5.8E-24 1.3E-28 192.7 37.1 337 190-581 159-496 (559)
31 PRK14574 hmsH outer membrane p 99.9 8E-23 1.7E-27 211.2 49.8 485 10-563 34-532 (822)
32 PRK14574 hmsH outer membrane p 99.9 6.4E-23 1.4E-27 211.9 47.2 445 70-587 41-520 (822)
33 PRK11788 tetratricopeptide rep 99.9 2E-24 4.3E-29 213.4 34.8 292 242-579 45-346 (389)
34 KOG2003 TPR repeat-containing 99.9 9.9E-24 2.1E-28 190.5 33.8 469 10-563 201-709 (840)
35 KOG1173 Anaphase-promoting com 99.9 1.8E-23 3.8E-28 194.4 34.5 296 191-524 240-535 (611)
36 KOG0495 HAT repeat protein [RN 99.9 4.4E-22 9.5E-27 187.7 43.6 340 195-585 516-885 (913)
37 KOG2003 TPR repeat-containing 99.9 1.4E-23 3.1E-28 189.5 32.1 453 17-538 244-717 (840)
38 KOG1173 Anaphase-promoting com 99.9 2.7E-23 5.8E-28 193.3 33.8 270 273-584 246-522 (611)
39 KOG0495 HAT repeat protein [RN 99.9 2.2E-21 4.8E-26 183.0 42.4 373 129-558 523-895 (913)
40 KOG0624 dsRNA-activated protei 99.9 4.5E-22 9.7E-27 173.6 30.0 373 158-584 35-426 (504)
41 KOG0548 Molecular co-chaperone 99.9 3.9E-22 8.5E-27 184.9 31.1 426 131-576 11-485 (539)
42 KOG2076 RNA polymerase III tra 99.9 6.3E-21 1.4E-25 187.1 38.1 361 166-573 144-548 (895)
43 KOG0548 Molecular co-chaperone 99.9 3.3E-21 7.2E-26 178.8 34.1 363 126-540 40-486 (539)
44 KOG2076 RNA polymerase III tra 99.9 3E-21 6.6E-26 189.3 34.1 360 194-578 138-510 (895)
45 PF13429 TPR_15: Tetratricopep 99.9 6.9E-24 1.5E-28 198.1 13.2 265 275-580 12-277 (280)
46 KOG1174 Anaphase-promoting com 99.9 4.1E-20 8.9E-25 165.4 35.4 288 250-585 216-505 (564)
47 KOG0624 dsRNA-activated protei 99.9 3.1E-21 6.7E-26 168.4 26.5 328 190-586 33-376 (504)
48 KOG4162 Predicted calmodulin-b 99.9 2.9E-20 6.3E-25 179.4 33.8 347 160-549 356-789 (799)
49 PRK12370 invasion protein regu 99.9 1.5E-20 3.2E-25 191.4 31.1 250 298-581 277-536 (553)
50 KOG1174 Anaphase-promoting com 99.9 3.7E-18 8E-23 153.0 41.7 292 181-518 218-511 (564)
51 KOG1129 TPR repeat-containing 99.9 1.5E-20 3.2E-25 163.1 24.9 239 320-589 226-467 (478)
52 TIGR00540 hemY_coli hemY prote 99.9 7.2E-20 1.6E-24 179.7 32.0 295 244-580 96-399 (409)
53 PRK12370 invasion protein regu 99.9 5.6E-20 1.2E-24 187.3 28.3 262 245-543 274-535 (553)
54 PF13429 TPR_15: Tetratricopep 99.9 6.3E-22 1.4E-26 184.9 13.0 231 273-542 46-276 (280)
55 TIGR00540 hemY_coli hemY prote 99.9 1.2E-18 2.6E-23 171.0 33.8 302 197-543 86-399 (409)
56 KOG1129 TPR repeat-containing 99.9 2.6E-20 5.6E-25 161.7 18.9 245 273-557 225-472 (478)
57 PRK10747 putative protoheme IX 99.9 2E-18 4.3E-23 168.5 34.4 132 441-581 260-391 (398)
58 KOG1125 TPR repeat-containing 99.9 3.1E-20 6.7E-25 174.0 20.5 257 274-572 288-563 (579)
59 PRK10747 putative protoheme IX 99.9 1.9E-18 4E-23 168.7 33.2 299 196-544 85-391 (398)
60 KOG1125 TPR repeat-containing 99.9 2.4E-20 5.2E-25 174.7 18.1 240 321-583 289-530 (579)
61 PRK11189 lipoprotein NlpI; Pro 99.9 4.5E-19 9.8E-24 165.5 25.7 234 296-563 40-286 (296)
62 PRK11189 lipoprotein NlpI; Pro 99.8 5.1E-19 1.1E-23 165.2 25.6 238 246-526 40-285 (296)
63 COG3063 PilF Tfp pilus assembl 99.8 5.9E-19 1.3E-23 146.5 22.8 209 318-551 36-244 (250)
64 COG3063 PilF Tfp pilus assembl 99.8 2.6E-18 5.7E-23 142.7 23.7 210 270-514 34-243 (250)
65 TIGR02521 type_IV_pilW type IV 99.8 2E-18 4.4E-23 157.9 25.5 199 317-540 31-229 (234)
66 TIGR02521 type_IV_pilW type IV 99.8 3.1E-18 6.6E-23 156.7 25.8 204 271-509 31-234 (234)
67 KOG1127 TPR repeat-containing 99.8 1.9E-18 4.1E-23 170.8 25.5 382 175-581 472-914 (1238)
68 KOG1156 N-terminal acetyltrans 99.8 5.9E-17 1.3E-21 153.8 33.9 332 205-584 17-438 (700)
69 KOG1127 TPR repeat-containing 99.8 1E-16 2.2E-21 158.8 35.7 456 58-580 487-996 (1238)
70 KOG1840 Kinesin light chain [C 99.8 2.4E-17 5.2E-22 159.3 29.0 247 313-579 195-478 (508)
71 KOG1915 Cell cycle control pro 99.8 4.8E-14 1.1E-18 129.2 48.3 493 4-581 67-586 (677)
72 KOG1156 N-terminal acetyltrans 99.8 4.2E-16 9.1E-21 148.1 36.1 401 151-579 31-510 (700)
73 COG2956 Predicted N-acetylgluc 99.8 4.3E-17 9.3E-22 141.8 27.0 259 298-583 51-314 (389)
74 PLN02789 farnesyltranstransfer 99.8 8.3E-18 1.8E-22 155.9 24.4 227 328-581 48-303 (320)
75 COG2956 Predicted N-acetylgluc 99.8 3.4E-16 7.5E-21 136.3 31.1 278 199-516 39-320 (389)
76 KOG0550 Molecular chaperone (D 99.8 5.4E-18 1.2E-22 152.2 18.0 269 275-583 53-353 (486)
77 PLN02789 farnesyltranstransfer 99.8 9.1E-17 2E-21 149.0 26.7 231 298-554 53-313 (320)
78 KOG1915 Cell cycle control pro 99.8 8.7E-14 1.9E-18 127.5 44.3 388 154-585 134-541 (677)
79 KOG1840 Kinesin light chain [C 99.8 3.8E-16 8.2E-21 151.1 30.5 245 269-542 197-478 (508)
80 PF12569 NARP1: NMDA receptor- 99.8 1.7E-14 3.8E-19 141.6 39.3 289 164-474 7-335 (517)
81 KOG0550 Molecular chaperone (D 99.8 3.7E-17 8E-22 146.9 17.2 296 197-546 51-353 (486)
82 KOG2376 Signal recognition par 99.7 3.4E-14 7.3E-19 133.9 35.0 141 439-585 336-492 (652)
83 cd05804 StaR_like StaR_like; a 99.7 1.4E-14 3E-19 141.2 32.9 313 227-581 2-337 (355)
84 KOG3785 Uncharacterized conser 99.7 7.6E-14 1.7E-18 123.2 29.5 409 132-583 32-493 (557)
85 cd05804 StaR_like StaR_like; a 99.7 8.5E-14 1.8E-18 135.7 32.6 317 191-544 2-337 (355)
86 TIGR03302 OM_YfiO outer membra 99.7 5E-15 1.1E-19 134.8 20.0 190 353-583 34-235 (235)
87 KOG2047 mRNA splicing factor [ 99.7 5.8E-11 1.3E-15 113.4 45.4 376 161-582 248-689 (835)
88 PRK15359 type III secretion sy 99.7 4.9E-15 1.1E-19 121.8 15.5 113 447-561 27-139 (144)
89 COG3071 HemY Uncharacterized e 99.6 3.4E-12 7.4E-17 115.3 33.3 302 199-579 88-389 (400)
90 KOG2376 Signal recognition par 99.6 1E-11 2.2E-16 117.5 37.7 387 132-573 22-513 (652)
91 COG3071 HemY Uncharacterized e 99.6 8.3E-13 1.8E-17 119.2 29.3 276 274-585 87-362 (400)
92 TIGR03302 OM_YfiO outer membra 99.6 3.9E-14 8.5E-19 128.9 20.5 198 312-545 28-234 (235)
93 PF12569 NARP1: NMDA receptor- 99.6 7.6E-13 1.7E-17 130.1 30.4 295 272-584 5-338 (517)
94 KOG3785 Uncharacterized conser 99.6 7.9E-12 1.7E-16 110.7 33.1 413 69-552 63-498 (557)
95 PRK15359 type III secretion sy 99.6 4.7E-15 1E-19 121.8 11.7 116 464-587 13-128 (144)
96 PRK04841 transcriptional regul 99.6 4.3E-12 9.3E-17 139.7 38.2 388 161-585 341-765 (903)
97 PRK10370 formate-dependent nit 99.6 1.8E-14 3.8E-19 125.0 14.9 124 457-585 52-178 (198)
98 KOG3060 Uncharacterized conser 99.6 1.9E-12 4.1E-17 109.5 26.3 184 317-525 52-238 (289)
99 KOG2047 mRNA splicing factor [ 99.6 1E-09 2.2E-14 105.1 44.5 331 189-563 343-709 (835)
100 COG5010 TadD Flp pilus assembl 99.6 3.2E-13 6.9E-18 115.5 18.9 178 334-539 50-227 (257)
101 COG5010 TadD Flp pilus assembl 99.6 3.3E-13 7.2E-18 115.4 18.5 176 301-503 52-227 (257)
102 KOG1128 Uncharacterized conser 99.6 1.4E-13 3E-18 133.1 17.9 223 315-582 396-618 (777)
103 PRK10370 formate-dependent nit 99.6 4.9E-13 1.1E-17 116.1 19.7 124 401-548 52-178 (198)
104 KOG3060 Uncharacterized conser 99.6 2.8E-12 6E-17 108.5 22.6 186 346-556 47-233 (289)
105 PRK15179 Vi polysaccharide bio 99.5 5E-13 1.1E-17 136.5 20.8 137 441-582 83-219 (694)
106 KOG4340 Uncharacterized conser 99.5 1.3E-11 2.8E-16 106.8 25.6 388 133-585 21-448 (459)
107 PRK14720 transcript cleavage f 99.5 1.4E-12 3E-17 134.0 23.2 234 311-586 25-312 (906)
108 KOG1130 Predicted G-alpha GTPa 99.5 1.2E-13 2.6E-18 124.5 12.5 277 277-580 23-344 (639)
109 KOG0553 TPR repeat-containing 99.5 3.5E-13 7.6E-18 117.4 14.7 118 444-563 81-198 (304)
110 TIGR02552 LcrH_SycD type III s 99.5 1.7E-13 3.6E-18 112.8 12.3 117 465-586 4-120 (135)
111 KOG1128 Uncharacterized conser 99.5 2.9E-12 6.2E-17 124.2 21.5 218 272-543 399-616 (777)
112 KOG1130 Predicted G-alpha GTPa 99.5 4.5E-13 9.7E-18 120.8 14.2 310 168-495 24-372 (639)
113 PRK15179 Vi polysaccharide bio 99.5 4.3E-12 9.4E-17 129.7 23.2 142 386-551 84-225 (694)
114 PRK04841 transcriptional regul 99.5 1.4E-10 3E-15 127.8 36.1 352 164-547 377-764 (903)
115 PRK14720 transcript cleavage f 99.5 1.2E-11 2.7E-16 127.1 25.3 244 155-489 25-268 (906)
116 PF04733 Coatomer_E: Coatomer 99.5 3.3E-13 7.1E-18 123.9 12.5 250 298-585 17-270 (290)
117 TIGR02552 LcrH_SycD type III s 99.4 2.8E-12 6.1E-17 105.5 13.7 110 441-552 14-123 (135)
118 PF04733 Coatomer_E: Coatomer 99.4 7.3E-12 1.6E-16 115.1 16.1 233 272-550 36-272 (290)
119 PRK15363 pathogenicity island 99.4 4E-12 8.7E-17 101.6 11.4 102 441-544 32-133 (157)
120 KOG4340 Uncharacterized conser 99.4 2.3E-10 5.1E-15 99.2 22.0 182 247-472 25-206 (459)
121 PRK15363 pathogenicity island 99.4 1.8E-11 3.8E-16 98.0 14.0 112 469-585 25-137 (157)
122 KOG0553 TPR repeat-containing 99.4 1.1E-11 2.4E-16 108.2 12.8 120 388-529 81-200 (304)
123 COG4783 Putative Zn-dependent 99.3 4.4E-10 9.5E-15 104.8 21.2 160 348-551 303-462 (484)
124 COG4783 Putative Zn-dependent 99.3 8.2E-10 1.8E-14 103.1 21.8 153 314-508 303-455 (484)
125 PLN03088 SGT1, suppressor of 99.3 9.5E-11 2.1E-15 112.1 14.7 114 447-562 5-118 (356)
126 KOG1941 Acetylcholine receptor 99.2 4.9E-09 1.1E-13 93.6 21.7 315 196-542 7-359 (518)
127 PF13525 YfiO: Outer membrane 99.2 1.7E-09 3.6E-14 95.0 18.9 159 389-571 6-198 (203)
128 PRK10866 outer membrane biogen 99.2 4.9E-09 1.1E-13 94.1 21.0 180 353-576 33-237 (243)
129 KOG1070 rRNA processing protei 99.2 4E-09 8.6E-14 109.6 22.5 236 300-563 1442-1686(1710)
130 PRK02603 photosystem I assembl 99.2 1.1E-09 2.3E-14 93.8 15.8 143 377-563 24-166 (172)
131 COG4235 Cytochrome c biogenesi 99.2 7.1E-10 1.5E-14 98.0 14.8 123 460-585 138-261 (287)
132 PF13525 YfiO: Outer membrane 99.2 2.3E-09 5E-14 94.1 18.0 158 353-529 6-195 (203)
133 PLN03088 SGT1, suppressor of 99.2 4.4E-10 9.5E-15 107.6 14.6 113 391-525 5-117 (356)
134 KOG1070 rRNA processing protei 99.1 1.9E-08 4.2E-13 104.7 25.3 220 333-581 1440-1664(1710)
135 TIGR02795 tol_pal_ybgF tol-pal 99.1 9.1E-10 2E-14 88.3 12.9 105 445-551 3-113 (119)
136 TIGR02795 tol_pal_ybgF tol-pal 99.1 4.8E-10 1E-14 89.9 11.2 104 478-586 2-111 (119)
137 PRK10866 outer membrane biogen 99.1 1.3E-08 2.8E-13 91.4 20.8 197 315-539 30-237 (243)
138 CHL00033 ycf3 photosystem I as 99.1 2.8E-09 6.2E-14 90.9 14.6 103 368-489 15-117 (168)
139 cd00189 TPR Tetratricopeptide 99.1 1.1E-09 2.5E-14 84.0 10.8 98 480-582 2-99 (100)
140 KOG2053 Mitochondrial inherita 99.1 5.8E-06 1.3E-10 83.3 37.9 379 173-576 21-498 (932)
141 PF13414 TPR_11: TPR repeat; P 99.1 4E-10 8.6E-15 79.9 6.8 66 444-509 3-69 (69)
142 PRK02603 photosystem I assembl 99.1 2E-09 4.3E-14 92.1 12.4 119 441-584 32-153 (172)
143 KOG3617 WD40 and TPR repeat-co 99.1 2.4E-07 5.2E-12 91.7 27.6 231 129-417 735-996 (1416)
144 KOG3081 Vesicle coat complex C 99.1 1.1E-07 2.4E-12 81.8 22.3 229 298-563 24-256 (299)
145 KOG1941 Acetylcholine receptor 99.1 9.3E-08 2E-12 85.7 22.4 311 240-579 14-359 (518)
146 PF14938 SNAP: Soluble NSF att 99.1 9.4E-09 2E-13 95.5 17.2 204 323-544 41-267 (282)
147 CHL00033 ycf3 photosystem I as 99.1 2.5E-09 5.5E-14 91.2 12.3 120 460-584 15-153 (168)
148 COG3898 Uncharacterized membra 99.1 2.2E-06 4.8E-11 77.9 31.0 290 170-507 93-392 (531)
149 PF13414 TPR_11: TPR repeat; P 99.1 4E-10 8.8E-15 79.8 6.2 66 512-582 3-69 (69)
150 PF09976 TPR_21: Tetratricopep 99.1 1E-08 2.3E-13 84.8 15.4 118 455-578 22-145 (145)
151 cd00189 TPR Tetratricopeptide 99.0 2.2E-09 4.7E-14 82.4 10.7 99 446-546 2-100 (100)
152 PF14938 SNAP: Soluble NSF att 99.0 1.6E-08 3.5E-13 94.0 18.2 208 355-582 38-268 (282)
153 PRK10153 DNA-binding transcrip 99.0 8.9E-09 1.9E-13 102.6 16.9 134 447-586 342-488 (517)
154 KOG3081 Vesicle coat complex C 99.0 4.1E-07 8.9E-12 78.4 24.3 199 319-549 74-277 (299)
155 PF09976 TPR_21: Tetratricopep 99.0 1.9E-08 4.1E-13 83.2 16.1 120 365-504 24-144 (145)
156 KOG3617 WD40 and TPR repeat-co 99.0 4.6E-07 9.9E-12 89.8 26.7 318 170-576 737-1105(1416)
157 COG4235 Cytochrome c biogenesi 99.0 9E-09 2E-13 91.1 13.7 106 441-548 153-261 (287)
158 PF13432 TPR_16: Tetratricopep 99.0 6.2E-10 1.3E-14 77.7 5.3 64 517-585 2-65 (65)
159 COG0457 NrfG FOG: TPR repeat [ 99.0 1E-06 2.3E-11 81.0 28.4 223 330-582 36-267 (291)
160 PF12895 Apc3: Anaphase-promot 99.0 2.3E-09 4.9E-14 79.2 8.1 83 401-504 2-84 (84)
161 PF13432 TPR_16: Tetratricopep 99.0 1.8E-09 4E-14 75.3 6.9 62 450-511 3-64 (65)
162 KOG0543 FKBP-type peptidyl-pro 99.0 1.4E-08 3E-13 93.2 14.3 135 444-583 208-358 (397)
163 KOG0543 FKBP-type peptidyl-pro 99.0 1.5E-08 3.3E-13 92.9 13.7 101 444-545 257-357 (397)
164 PRK11906 transcriptional regul 98.9 1.8E-08 3.9E-13 95.0 13.9 121 459-584 273-405 (458)
165 PF12895 Apc3: Anaphase-promot 98.9 1.9E-09 4.2E-14 79.6 5.7 80 491-576 2-83 (84)
166 KOG1914 mRNA cleavage and poly 98.9 4.9E-05 1.1E-09 72.5 35.4 413 154-582 13-503 (656)
167 PRK15331 chaperone protein Sic 98.9 7E-09 1.5E-13 83.5 8.9 106 440-548 33-138 (165)
168 COG0457 NrfG FOG: TPR repeat [ 98.9 2E-06 4.4E-11 79.1 27.2 224 298-546 39-268 (291)
169 PRK11906 transcriptional regul 98.9 9.3E-08 2E-12 90.2 17.5 172 234-415 258-434 (458)
170 PRK15331 chaperone protein Sic 98.9 4.6E-08 9.9E-13 78.9 13.2 111 468-584 27-137 (165)
171 KOG3616 Selective LIM binding 98.9 1.9E-05 4.1E-10 77.7 32.7 124 444-583 882-1027(1636)
172 PRK10153 DNA-binding transcrip 98.9 8.6E-08 1.9E-12 95.7 16.9 85 462-549 402-488 (517)
173 PRK10803 tol-pal system protei 98.9 5.9E-08 1.3E-12 87.7 14.2 105 444-550 142-253 (263)
174 PRK10803 tol-pal system protei 98.9 3E-08 6.6E-13 89.5 12.3 105 477-586 141-252 (263)
175 COG4785 NlpI Lipoprotein NlpI, 98.9 1E-06 2.2E-11 73.4 19.4 195 269-507 63-266 (297)
176 COG3898 Uncharacterized membra 98.8 2.7E-05 6E-10 71.1 29.0 285 246-585 98-396 (531)
177 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.2E-07 2.7E-12 90.1 14.7 122 448-577 173-294 (395)
178 COG4105 ComL DNA uptake lipopr 98.8 1.9E-06 4.2E-11 74.8 20.5 173 388-584 34-237 (254)
179 PF12688 TPR_5: Tetratrico pep 98.8 1.3E-07 2.8E-12 73.6 12.0 96 445-542 2-103 (120)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.5E-07 3.1E-12 89.6 14.4 127 354-507 171-297 (395)
181 KOG4648 Uncharacterized conser 98.8 1.6E-08 3.5E-13 89.8 7.2 227 320-585 100-335 (536)
182 KOG2300 Uncharacterized conser 98.8 0.00016 3.6E-09 68.0 33.3 136 443-586 366-520 (629)
183 PF12688 TPR_5: Tetratrico pep 98.8 1.9E-07 4.1E-12 72.7 11.8 97 478-579 1-103 (120)
184 PF14559 TPR_19: Tetratricopep 98.8 2.9E-08 6.3E-13 70.0 6.7 65 455-519 2-66 (68)
185 KOG2053 Mitochondrial inherita 98.7 0.00043 9.3E-09 70.4 39.1 228 75-350 21-259 (932)
186 COG4785 NlpI Lipoprotein NlpI, 98.7 4.1E-07 8.9E-12 75.7 13.7 167 386-580 63-266 (297)
187 COG4105 ComL DNA uptake lipopr 98.7 3.6E-06 7.9E-11 73.2 20.0 174 317-548 34-238 (254)
188 PF14559 TPR_19: Tetratricopep 98.7 2.9E-08 6.3E-13 70.0 5.7 67 489-557 2-68 (68)
189 COG4700 Uncharacterized protei 98.7 6.5E-06 1.4E-10 67.0 19.3 128 444-577 89-219 (251)
190 PF13371 TPR_9: Tetratricopept 98.7 8.5E-08 1.8E-12 68.7 7.6 67 451-517 2-68 (73)
191 KOG4648 Uncharacterized conser 98.7 1.4E-08 2.9E-13 90.2 3.8 243 275-556 101-343 (536)
192 COG1729 Uncharacterized protei 98.7 4.3E-07 9.3E-12 79.6 12.9 107 391-516 144-253 (262)
193 COG4700 Uncharacterized protei 98.7 3.3E-06 7.1E-11 68.7 16.7 150 247-417 71-222 (251)
194 COG1729 Uncharacterized protei 98.7 6.2E-07 1.3E-11 78.7 13.3 104 447-552 144-253 (262)
195 KOG4234 TPR repeat-containing 98.6 4.4E-07 9.6E-12 74.5 10.9 113 445-559 96-213 (271)
196 KOG4234 TPR repeat-containing 98.6 3.9E-07 8.4E-12 74.8 10.1 115 390-521 97-211 (271)
197 KOG2471 TPR repeat-containing 98.6 5.4E-05 1.2E-09 71.2 24.9 346 199-578 210-682 (696)
198 PF13371 TPR_9: Tetratricopept 98.6 2.3E-07 5E-12 66.4 7.4 67 485-553 2-68 (73)
199 KOG2796 Uncharacterized conser 98.6 6.8E-05 1.5E-09 64.8 22.9 186 323-547 128-319 (366)
200 PF13512 TPR_18: Tetratricopep 98.6 2.6E-06 5.5E-11 67.4 13.1 107 353-478 11-133 (142)
201 PF13512 TPR_18: Tetratricopep 98.6 2E-06 4.4E-11 68.0 12.3 86 388-492 10-98 (142)
202 KOG2796 Uncharacterized conser 98.5 4.4E-05 9.5E-10 65.9 20.9 137 444-585 177-320 (366)
203 PF06552 TOM20_plant: Plant sp 98.5 9.6E-07 2.1E-11 72.0 9.2 98 460-557 7-123 (186)
204 KOG4507 Uncharacterized conser 98.5 1.7E-05 3.6E-10 76.1 18.2 99 484-587 613-712 (886)
205 PF13424 TPR_12: Tetratricopep 98.4 4.9E-07 1.1E-11 65.7 6.0 73 8-92 3-75 (78)
206 PF13424 TPR_12: Tetratricopep 98.4 9.2E-07 2E-11 64.2 7.3 73 386-473 3-75 (78)
207 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 8E-07 1.7E-11 83.9 8.4 70 473-544 70-142 (453)
208 KOG4555 TPR repeat-containing 98.4 2.1E-05 4.6E-10 59.9 13.6 94 323-417 49-144 (175)
209 KOG0985 Vesicle coat protein c 98.4 0.0029 6.3E-08 65.4 32.5 200 315-561 1102-1326(1666)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.3E-06 2.7E-11 82.6 8.6 72 437-508 68-142 (453)
211 PF06552 TOM20_plant: Plant sp 98.4 1.1E-06 2.4E-11 71.6 7.1 92 494-585 7-114 (186)
212 KOG4555 TPR repeat-containing 98.4 1.4E-05 3.1E-10 60.8 12.1 99 446-546 45-147 (175)
213 KOG3616 Selective LIM binding 98.3 0.0056 1.2E-07 61.1 36.6 186 365-577 976-1181(1636)
214 PF07079 DUF1347: Protein of u 98.3 0.0036 7.9E-08 59.0 28.0 50 522-577 472-521 (549)
215 PF05843 Suf: Suppressor of fo 98.3 1.2E-05 2.5E-10 74.5 12.3 136 445-585 2-141 (280)
216 KOG1586 Protein required for f 98.3 0.0001 2.3E-09 62.5 16.1 186 363-586 25-230 (288)
217 KOG0985 Vesicle coat protein c 98.3 0.0023 5.1E-08 66.0 28.3 288 201-571 1054-1374(1666)
218 KOG1914 mRNA cleavage and poly 98.3 0.0053 1.2E-07 59.2 37.5 376 185-580 10-464 (656)
219 KOG2471 TPR repeat-containing 98.2 0.00067 1.5E-08 64.1 22.6 164 319-489 208-380 (696)
220 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.0051 1.1E-07 57.9 33.8 407 154-583 35-534 (660)
221 KOG1258 mRNA processing protei 98.2 0.0078 1.7E-07 59.1 35.9 185 353-562 298-489 (577)
222 PF05843 Suf: Suppressor of fo 98.2 0.0001 2.2E-09 68.3 16.3 136 319-476 3-139 (280)
223 KOG1586 Protein required for f 98.2 0.002 4.4E-08 55.0 21.7 145 354-515 76-232 (288)
224 KOG4642 Chaperone-dependent E3 98.2 5.9E-06 1.3E-10 70.1 6.7 116 444-561 10-130 (284)
225 PF04184 ST7: ST7 protein; In 98.1 0.00018 3.9E-09 68.5 17.0 194 322-551 173-383 (539)
226 PF04184 ST7: ST7 protein; In 98.1 0.00084 1.8E-08 64.1 21.3 189 199-423 172-381 (539)
227 KOG4642 Chaperone-dependent E3 98.1 3.9E-05 8.6E-10 65.3 11.3 94 482-580 14-107 (284)
228 KOG2610 Uncharacterized conser 98.1 0.00034 7.3E-09 62.9 17.1 172 355-548 106-283 (491)
229 KOG2300 Uncharacterized conser 98.1 0.0098 2.1E-07 56.6 42.9 449 61-565 5-542 (629)
230 PF13428 TPR_14: Tetratricopep 98.1 7.3E-06 1.6E-10 51.3 4.8 42 445-486 2-43 (44)
231 PF10345 Cohesin_load: Cohesin 98.1 0.014 3E-07 61.0 31.0 337 212-563 38-464 (608)
232 KOG1585 Protein required for f 98.0 0.0024 5.2E-08 55.0 20.0 221 298-537 9-250 (308)
233 KOG1585 Protein required for f 98.0 0.00081 1.8E-08 57.7 17.0 199 353-574 32-250 (308)
234 PF13431 TPR_17: Tetratricopep 98.0 6.8E-06 1.5E-10 47.8 3.1 32 537-571 2-33 (34)
235 KOG1550 Extracellular protein 98.0 0.0059 1.3E-07 62.6 26.2 246 298-583 228-541 (552)
236 PF07079 DUF1347: Protein of u 98.0 0.016 3.6E-07 54.8 37.5 137 353-504 380-521 (549)
237 KOG2610 Uncharacterized conser 98.0 0.0003 6.5E-09 63.2 14.1 170 320-512 106-283 (491)
238 PF10300 DUF3808: Protein of u 98.0 0.0076 1.7E-07 60.3 25.7 180 374-581 179-377 (468)
239 PF13431 TPR_17: Tetratricopep 97.9 9.1E-06 2E-10 47.2 2.8 32 467-498 2-33 (34)
240 KOG1258 mRNA processing protei 97.9 0.025 5.3E-07 55.8 27.0 267 298-571 61-420 (577)
241 KOG4507 Uncharacterized conser 97.9 0.00053 1.1E-08 66.3 15.5 105 453-559 616-721 (886)
242 KOG0545 Aryl-hydrocarbon recep 97.9 0.00012 2.6E-09 62.6 10.0 105 444-550 178-300 (329)
243 PF02259 FAT: FAT domain; Int 97.9 0.01 2.2E-07 57.8 25.1 141 441-583 143-341 (352)
244 PF00515 TPR_1: Tetratricopept 97.9 1.9E-05 4.2E-10 46.3 3.4 34 548-584 1-34 (34)
245 KOG0530 Protein farnesyltransf 97.8 0.0057 1.2E-07 53.3 19.1 201 331-558 57-269 (318)
246 PF07719 TPR_2: Tetratricopept 97.8 3.3E-05 7.1E-10 45.3 4.1 34 548-584 1-34 (34)
247 KOG0530 Protein farnesyltransf 97.8 0.013 2.9E-07 51.1 21.1 204 299-522 60-269 (318)
248 PF02259 FAT: FAT domain; Int 97.8 0.035 7.6E-07 54.0 27.8 138 353-490 147-304 (352)
249 PF13281 DUF4071: Domain of un 97.8 0.007 1.5E-07 57.2 21.3 180 272-478 142-339 (374)
250 PF13281 DUF4071: Domain of un 97.8 0.0061 1.3E-07 57.6 20.6 173 387-583 140-337 (374)
251 KOG0376 Serine-threonine phosp 97.8 5.6E-05 1.2E-09 71.5 6.7 111 447-559 7-117 (476)
252 KOG0890 Protein kinase of the 97.8 0.031 6.7E-07 63.8 28.0 116 441-558 1667-1799(2382)
253 PF10300 DUF3808: Protein of u 97.8 0.0021 4.5E-08 64.3 17.8 179 305-507 180-376 (468)
254 KOG1550 Extracellular protein 97.7 0.025 5.5E-07 58.1 25.6 293 211-546 228-541 (552)
255 COG3118 Thioredoxin domain-con 97.7 0.0039 8.5E-08 55.7 16.8 154 314-492 131-286 (304)
256 PF00515 TPR_1: Tetratricopept 97.7 5.6E-05 1.2E-09 44.3 3.6 30 480-509 3-32 (34)
257 KOG0376 Serine-threonine phosp 97.7 4.6E-05 9.9E-10 72.1 4.6 100 483-587 9-108 (476)
258 PF07719 TPR_2: Tetratricopept 97.7 9.5E-05 2.1E-09 43.3 4.2 31 480-510 3-33 (34)
259 KOG0545 Aryl-hydrocarbon recep 97.7 0.00038 8.1E-09 59.7 9.2 99 481-584 181-297 (329)
260 PF03704 BTAD: Bacterial trans 97.6 0.00098 2.1E-08 55.2 11.3 62 444-505 62-123 (146)
261 COG2909 MalT ATP-dependent tra 97.6 0.12 2.5E-06 53.7 27.3 275 195-507 347-647 (894)
262 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.083 1.8E-06 50.1 30.8 355 184-580 31-495 (660)
263 PF03704 BTAD: Bacterial trans 97.5 0.0023 5.1E-08 53.0 12.4 117 446-579 8-124 (146)
264 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0075 1.6E-07 54.5 14.9 104 387-508 80-183 (390)
265 COG3118 Thioredoxin domain-con 97.4 0.0075 1.6E-07 54.0 14.7 133 444-582 134-267 (304)
266 COG2909 MalT ATP-dependent tra 97.4 0.21 4.5E-06 51.9 30.9 328 105-470 327-685 (894)
267 COG2976 Uncharacterized protei 97.4 0.015 3.2E-07 48.7 15.2 95 482-582 93-190 (207)
268 KOG0551 Hsp90 co-chaperone CNS 97.4 0.00079 1.7E-08 60.6 8.5 100 443-544 80-183 (390)
269 PF13181 TPR_8: Tetratricopept 97.3 0.00036 7.8E-09 40.7 3.9 33 549-584 2-34 (34)
270 PF08424 NRDE-2: NRDE-2, neces 97.3 0.029 6.3E-07 53.2 18.7 165 303-475 6-185 (321)
271 COG2976 Uncharacterized protei 97.3 0.041 8.8E-07 46.1 16.7 119 335-476 70-191 (207)
272 KOG2396 HAT (Half-A-TPR) repea 97.3 0.21 4.5E-06 48.4 36.1 410 151-580 95-559 (568)
273 PF10345 Cohesin_load: Cohesin 97.3 0.34 7.5E-06 50.8 41.2 209 354-579 363-605 (608)
274 PF13041 PPR_2: PPR repeat fam 97.2 0.00094 2E-08 43.1 5.4 44 65-108 5-48 (50)
275 KOG1308 Hsp70-interacting prot 97.2 0.00037 8.1E-09 63.0 4.3 93 452-546 122-214 (377)
276 COG0790 FOG: TPR repeat, SEL1 97.2 0.045 9.7E-07 51.6 18.7 167 327-526 51-236 (292)
277 PF08631 SPO22: Meiosis protei 97.2 0.2 4.4E-06 46.5 26.6 132 272-417 36-186 (278)
278 KOG0890 Protein kinase of the 97.2 0.78 1.7E-05 53.2 29.6 351 200-589 1388-1793(2382)
279 KOG1308 Hsp70-interacting prot 97.2 0.00021 4.5E-09 64.5 2.2 92 487-583 123-214 (377)
280 KOG2041 WD40 repeat protein [G 97.2 0.092 2E-06 52.6 20.0 175 272-503 693-877 (1189)
281 PF09613 HrpB1_HrpK: Bacterial 97.1 0.044 9.5E-07 44.7 14.7 115 444-563 10-124 (160)
282 COG0790 FOG: TPR repeat, SEL1 97.1 0.27 5.8E-06 46.3 23.0 169 295-492 54-236 (292)
283 PF13374 TPR_10: Tetratricopep 97.0 0.0012 2.6E-08 40.7 4.2 41 10-50 2-42 (42)
284 PF13181 TPR_8: Tetratricopept 97.0 0.0012 2.5E-08 38.5 3.7 30 446-475 3-32 (34)
285 PF13176 TPR_7: Tetratricopept 97.0 0.00063 1.4E-08 40.2 2.4 31 550-583 1-31 (36)
286 PF08424 NRDE-2: NRDE-2, neces 97.0 0.093 2E-06 49.8 18.2 123 294-418 43-184 (321)
287 KOG1464 COP9 signalosome, subu 96.9 0.13 2.7E-06 45.4 16.6 217 298-527 43-287 (440)
288 PF08631 SPO22: Meiosis protei 96.9 0.38 8.2E-06 44.7 27.2 165 206-381 4-186 (278)
289 KOG2041 WD40 repeat protein [G 96.8 0.068 1.5E-06 53.5 15.8 204 315-576 690-903 (1189)
290 PF04910 Tcf25: Transcriptiona 96.8 0.17 3.6E-06 48.7 18.4 100 444-545 103-224 (360)
291 PF04910 Tcf25: Transcriptiona 96.8 0.087 1.9E-06 50.6 16.3 150 311-477 34-226 (360)
292 PF13174 TPR_6: Tetratricopept 96.8 0.0021 4.6E-08 37.1 3.4 32 550-584 2-33 (33)
293 PF14561 TPR_20: Tetratricopep 96.7 0.029 6.3E-07 41.3 9.6 47 302-349 8-54 (90)
294 PF13174 TPR_6: Tetratricopept 96.7 0.0031 6.8E-08 36.3 3.7 30 481-510 3-32 (33)
295 KOG3824 Huntingtin interacting 96.5 0.012 2.6E-07 52.6 7.9 76 446-521 118-193 (472)
296 COG4649 Uncharacterized protei 96.5 0.34 7.5E-06 39.8 16.3 139 364-521 70-209 (221)
297 TIGR02561 HrpB1_HrpK type III 96.5 0.16 3.4E-06 40.7 13.3 84 446-529 12-95 (153)
298 KOG2396 HAT (Half-A-TPR) repea 96.5 0.035 7.5E-07 53.4 11.2 89 463-553 90-179 (568)
299 KOG3783 Uncharacterized conser 96.4 0.85 1.9E-05 44.8 20.0 242 299-546 250-523 (546)
300 PF13041 PPR_2: PPR repeat fam 96.4 0.012 2.6E-07 37.9 5.5 41 194-234 2-42 (50)
301 PF13176 TPR_7: Tetratricopept 96.4 0.0055 1.2E-07 36.1 3.5 24 447-470 2-25 (36)
302 PF04781 DUF627: Protein of un 96.3 0.13 2.8E-06 38.9 11.1 48 298-346 60-107 (111)
303 PRK10941 hypothetical protein; 96.3 0.014 3.1E-07 53.0 7.2 77 479-557 182-258 (269)
304 PF04781 DUF627: Protein of un 96.3 0.05 1.1E-06 41.1 8.8 46 532-580 62-107 (111)
305 PF09613 HrpB1_HrpK: Bacterial 96.2 0.079 1.7E-06 43.3 10.2 83 479-563 11-93 (160)
306 smart00028 TPR Tetratricopepti 96.2 0.009 1.9E-07 33.9 3.8 33 549-584 2-34 (34)
307 PF14561 TPR_20: Tetratricopep 96.2 0.13 2.7E-06 38.0 10.5 80 336-416 7-86 (90)
308 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.022 4.8E-07 36.8 5.5 40 318-358 2-41 (53)
309 PRK10941 hypothetical protein; 96.1 0.05 1.1E-06 49.5 10.0 76 444-519 181-256 (269)
310 KOG1538 Uncharacterized conser 96.1 0.35 7.5E-06 48.3 15.9 216 320-577 588-830 (1081)
311 KOG3824 Huntingtin interacting 96.1 0.018 3.9E-07 51.5 6.6 70 484-555 122-191 (472)
312 KOG1464 COP9 signalosome, subu 96.1 0.72 1.6E-05 40.9 16.1 198 174-383 40-262 (440)
313 PF12854 PPR_1: PPR repeat 96.0 0.014 3.1E-07 33.8 3.9 29 158-186 4-32 (34)
314 COG4649 Uncharacterized protei 96.0 0.72 1.6E-05 38.0 16.0 28 318-345 168-195 (221)
315 PF12854 PPR_1: PPR repeat 95.9 0.021 4.5E-07 33.1 4.3 32 190-221 2-33 (34)
316 PRK15180 Vi polysaccharide bio 95.9 1.8 4E-05 41.8 21.7 120 298-421 305-424 (831)
317 smart00028 TPR Tetratricopepti 95.8 0.017 3.6E-07 32.7 3.8 30 480-509 3-32 (34)
318 PF09986 DUF2225: Uncharacteri 95.8 0.3 6.5E-06 43.0 13.0 93 401-508 90-195 (214)
319 TIGR00756 PPR pentatricopeptid 95.7 0.021 4.4E-07 33.2 3.9 32 66-97 3-34 (35)
320 PF14853 Fis1_TPR_C: Fis1 C-te 95.6 0.064 1.4E-06 34.7 5.9 36 515-552 4-39 (53)
321 PRK15180 Vi polysaccharide bio 95.6 0.075 1.6E-06 50.8 8.7 125 455-584 300-424 (831)
322 COG3914 Spy Predicted O-linked 95.5 0.22 4.8E-06 49.2 12.0 126 457-586 44-177 (620)
323 PF10602 RPN7: 26S proteasome 95.5 0.22 4.9E-06 42.4 10.9 101 388-507 36-142 (177)
324 PF12968 DUF3856: Domain of Un 95.5 0.46 1E-05 36.2 10.9 102 395-506 16-128 (144)
325 COG4976 Predicted methyltransf 95.5 0.02 4.3E-07 49.0 4.3 59 488-548 5-63 (287)
326 PF10602 RPN7: 26S proteasome 95.5 0.26 5.6E-06 42.0 11.1 64 318-381 37-102 (177)
327 PF09986 DUF2225: Uncharacteri 95.5 0.68 1.5E-05 40.8 14.0 75 269-348 116-196 (214)
328 KOG0128 RNA-binding protein SA 95.4 4 8.7E-05 42.6 30.1 397 158-578 110-561 (881)
329 COG5191 Uncharacterized conser 95.4 0.028 6.1E-07 50.4 5.1 77 440-516 103-180 (435)
330 PF04053 Coatomer_WDAD: Coatom 95.2 1.4 2.9E-05 43.8 16.7 159 205-415 271-429 (443)
331 COG4976 Predicted methyltransf 95.1 0.04 8.7E-07 47.2 4.9 60 452-511 3-62 (287)
332 TIGR02561 HrpB1_HrpK type III 95.0 0.34 7.3E-06 38.9 9.6 81 481-563 13-93 (153)
333 PF04190 DUF410: Protein of un 95.0 2.7 5.8E-05 38.5 16.9 71 191-261 86-170 (260)
334 PF12968 DUF3856: Domain of Un 94.8 0.51 1.1E-05 36.0 9.3 95 454-580 19-129 (144)
335 PRK13184 pknD serine/threonine 94.5 9 0.0002 41.9 25.3 98 246-351 489-586 (932)
336 PRK11619 lytic murein transgly 94.5 7.5 0.00016 40.9 34.7 331 196-579 34-374 (644)
337 PRK13184 pknD serine/threonine 94.5 9.2 0.0002 41.9 29.6 97 167-267 481-587 (932)
338 PF13812 PPR_3: Pentatricopept 94.3 0.093 2E-06 30.2 3.9 31 66-96 4-34 (34)
339 KOG3807 Predicted membrane pro 94.0 5.1 0.00011 36.9 20.1 23 532-554 380-402 (556)
340 KOG3364 Membrane protein invol 93.9 1.3 2.9E-05 34.8 10.1 78 478-557 32-114 (149)
341 COG3914 Spy Predicted O-linked 93.8 5.6 0.00012 39.9 16.7 74 336-412 50-125 (620)
342 COG5191 Uncharacterized conser 93.7 0.16 3.5E-06 45.8 5.8 87 466-554 95-182 (435)
343 KOG3364 Membrane protein invol 93.7 2.1 4.5E-05 33.8 11.0 73 316-390 31-107 (149)
344 KOG1310 WD40 repeat protein [G 93.7 0.26 5.6E-06 47.9 7.4 105 442-548 372-479 (758)
345 KOG1310 WD40 repeat protein [G 93.6 0.17 3.7E-06 49.1 6.2 92 490-584 386-478 (758)
346 KOG1839 Uncharacterized protei 93.6 0.9 1.9E-05 49.7 12.0 173 319-506 934-1127(1236)
347 KOG2581 26S proteasome regulat 93.5 7.3 0.00016 37.1 16.8 108 388-511 169-280 (493)
348 PF11207 DUF2989: Protein of u 93.4 1.2 2.6E-05 38.1 10.2 75 369-463 123-197 (203)
349 TIGR00756 PPR pentatricopeptid 93.4 0.18 3.9E-06 29.0 4.0 33 197-229 2-34 (35)
350 KOG0529 Protein geranylgeranyl 93.3 7.8 0.00017 37.1 19.2 130 459-589 90-233 (421)
351 PF13374 TPR_10: Tetratricopep 93.3 0.15 3.2E-06 31.0 3.8 29 549-580 3-31 (42)
352 KOG1839 Uncharacterized protei 93.3 0.92 2E-05 49.6 11.5 171 391-581 935-1129(1236)
353 PF04053 Coatomer_WDAD: Coatom 93.3 7.3 0.00016 38.8 17.1 127 328-503 272-398 (443)
354 COG1747 Uncharacterized N-term 93.1 9.7 0.00021 37.6 21.1 188 313-524 62-251 (711)
355 KOG2422 Uncharacterized conser 93.0 11 0.00023 37.9 18.1 160 298-476 254-451 (665)
356 KOG4814 Uncharacterized conser 92.9 0.78 1.7E-05 45.9 9.5 90 451-542 361-456 (872)
357 PF01535 PPR: PPR repeat; Int 92.9 0.15 3.3E-06 28.4 3.1 28 66-93 3-30 (31)
358 KOG1538 Uncharacterized conser 92.7 13 0.00027 37.9 21.8 181 276-505 637-831 (1081)
359 PF12862 Apc5: Anaphase-promot 92.7 2.3 5E-05 31.7 10.0 58 362-419 8-72 (94)
360 COG1747 Uncharacterized N-term 92.5 12 0.00026 37.0 20.7 206 346-585 61-293 (711)
361 PF10516 SHNi-TPR: SHNi-TPR; 92.5 0.29 6.2E-06 29.0 3.7 36 10-45 1-36 (38)
362 KOG4814 Uncharacterized conser 92.1 1.4 2.9E-05 44.3 9.9 62 445-506 395-456 (872)
363 COG3629 DnrI DNA-binding trans 92.1 2.1 4.6E-05 39.1 10.6 63 444-506 153-215 (280)
364 PF12862 Apc5: Anaphase-promot 92.0 1.7 3.7E-05 32.4 8.6 67 16-92 4-70 (94)
365 PF13812 PPR_3: Pentatricopept 91.9 0.36 7.8E-06 27.6 3.8 30 197-226 3-32 (34)
366 PF07720 TPR_3: Tetratricopept 91.8 0.46 1E-05 27.8 4.0 33 549-584 2-36 (36)
367 KOG0529 Protein geranylgeranyl 91.7 13 0.00028 35.7 15.7 134 403-558 90-239 (421)
368 KOG3807 Predicted membrane pro 91.6 11 0.00024 34.8 18.4 21 462-482 380-400 (556)
369 KOG1463 26S proteasome regulat 91.6 12 0.00025 34.9 20.4 296 14-349 8-319 (411)
370 PF07721 TPR_4: Tetratricopept 91.6 0.31 6.7E-06 26.0 3.0 21 481-501 4-24 (26)
371 KOG2422 Uncharacterized conser 91.2 18 0.00039 36.4 17.9 157 386-545 282-450 (665)
372 KOG4422 Uncharacterized conser 91.1 15 0.00033 35.4 32.1 102 151-253 263-377 (625)
373 COG2912 Uncharacterized conser 90.9 1.5 3.2E-05 39.5 8.2 68 447-514 184-251 (269)
374 PF11207 DUF2989: Protein of u 90.7 10 0.00022 32.7 14.4 56 442-498 139-198 (203)
375 COG2912 Uncharacterized conser 90.7 0.58 1.2E-05 42.0 5.6 71 481-553 184-254 (269)
376 PF07721 TPR_4: Tetratricopept 90.5 0.4 8.7E-06 25.6 2.8 24 549-575 2-25 (26)
377 PF04190 DUF410: Protein of un 90.5 14 0.0003 33.9 20.5 29 385-413 87-115 (260)
378 KOG2581 26S proteasome regulat 90.1 2.6 5.6E-05 40.0 9.3 141 444-589 124-285 (493)
379 COG3629 DnrI DNA-binding trans 90.0 1.5 3.2E-05 40.0 7.6 64 478-543 153-216 (280)
380 KOG1463 26S proteasome regulat 89.9 17 0.00036 34.0 23.1 174 321-510 132-319 (411)
381 PF07720 TPR_3: Tetratricopept 89.7 0.97 2.1E-05 26.4 4.1 19 482-500 5-23 (36)
382 PF15015 NYD-SP12_N: Spermatog 88.6 3.1 6.7E-05 39.7 8.6 59 445-503 229-287 (569)
383 PF10516 SHNi-TPR: SHNi-TPR; 88.1 0.82 1.8E-05 27.1 3.1 30 549-581 2-31 (38)
384 PF01535 PPR: PPR repeat; Int 87.9 0.73 1.6E-05 25.5 2.9 25 198-222 3-27 (31)
385 PF10373 EST1_DNA_bind: Est1 D 87.9 1.9 4.2E-05 40.1 7.4 62 463-524 1-62 (278)
386 COG5159 RPN6 26S proteasome re 87.8 21 0.00046 32.4 21.5 203 168-382 10-236 (421)
387 PF15015 NYD-SP12_N: Spermatog 87.7 3 6.5E-05 39.8 8.0 90 449-540 181-288 (569)
388 KOG3783 Uncharacterized conser 87.4 34 0.00073 34.3 26.4 67 444-510 449-523 (546)
389 COG5159 RPN6 26S proteasome re 87.0 24 0.00051 32.1 22.0 292 199-524 7-331 (421)
390 TIGR03504 FimV_Cterm FimV C-te 86.5 0.86 1.9E-05 28.1 2.7 24 199-222 3-26 (44)
391 PF10579 Rapsyn_N: Rapsyn N-te 85.7 5.6 0.00012 28.1 6.6 59 393-470 11-69 (80)
392 PF04348 LppC: LppC putative l 85.6 0.25 5.3E-06 50.5 0.0 96 387-503 23-123 (536)
393 PF11817 Foie-gras_1: Foie gra 85.1 28 0.0006 31.7 13.0 26 320-345 13-38 (247)
394 COG3947 Response regulator con 84.9 4.4 9.4E-05 36.8 7.2 59 320-379 282-340 (361)
395 PF10373 EST1_DNA_bind: Est1 D 84.2 2.8 6E-05 39.0 6.4 62 497-560 1-62 (278)
396 smart00386 HAT HAT (Half-A-TPR 83.9 2.6 5.6E-05 23.5 3.9 29 458-486 1-29 (33)
397 KOG1920 IkappaB kinase complex 83.9 77 0.0017 35.3 25.3 25 392-416 1003-1027(1265)
398 TIGR03504 FimV_Cterm FimV C-te 83.7 2 4.4E-05 26.5 3.4 23 357-379 4-26 (44)
399 COG3947 Response regulator con 82.9 22 0.00048 32.5 10.7 59 446-504 281-339 (361)
400 KOG0686 COP9 signalosome, subu 82.8 18 0.00039 34.7 10.6 98 389-505 151-256 (466)
401 KOG2114 Vacuolar assembly/sort 82.3 74 0.0016 33.9 26.0 234 169-423 342-596 (933)
402 smart00386 HAT HAT (Half-A-TPR 82.1 2.9 6.3E-05 23.2 3.7 25 532-556 5-29 (33)
403 KOG0276 Vesicle coat complex C 81.7 29 0.00062 35.3 11.9 25 390-414 668-692 (794)
404 COG5187 RPN7 26S proteasome re 81.4 39 0.00085 30.9 11.6 102 317-418 115-222 (412)
405 PF00244 14-3-3: 14-3-3 protei 81.4 41 0.00088 30.3 12.3 61 320-380 4-65 (236)
406 PF10579 Rapsyn_N: Rapsyn N-te 80.6 18 0.00038 25.7 7.7 42 298-340 22-66 (80)
407 KOG0546 HSP90 co-chaperone CPR 80.1 5.5 0.00012 37.2 6.3 123 394-521 228-352 (372)
408 PF11817 Foie-gras_1: Foie gra 80.0 16 0.00035 33.2 9.5 62 444-505 178-245 (247)
409 KOG2114 Vacuolar assembly/sort 79.7 69 0.0015 34.1 14.3 207 323-579 340-549 (933)
410 KOG2062 26S proteasome regulat 79.5 87 0.0019 33.0 21.8 20 14-33 63-82 (929)
411 PF09670 Cas_Cas02710: CRISPR- 79.4 59 0.0013 31.9 13.6 62 321-382 135-199 (379)
412 COG4455 ImpE Protein of avirul 79.1 16 0.00034 31.9 8.1 62 451-512 8-69 (273)
413 KOG1920 IkappaB kinase complex 78.9 1.2E+02 0.0025 34.1 21.6 133 329-504 920-1052(1265)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 78.6 31 0.00068 27.4 12.7 84 403-505 41-126 (126)
415 KOG4014 Uncharacterized conser 78.4 40 0.00087 28.5 13.0 194 193-418 32-234 (248)
416 COG4455 ImpE Protein of avirul 77.8 18 0.00039 31.5 8.1 58 325-383 9-66 (273)
417 PRK11619 lytic murein transgly 76.7 1.1E+02 0.0024 32.6 34.6 356 155-577 90-465 (644)
418 KOG0276 Vesicle coat complex C 76.2 44 0.00094 34.1 11.3 95 298-414 653-747 (794)
419 PF10255 Paf67: RNA polymerase 75.1 6.4 0.00014 38.2 5.5 61 319-380 124-192 (404)
420 PF00244 14-3-3: 14-3-3 protei 74.6 66 0.0014 29.0 14.6 29 355-383 4-32 (236)
421 cd02682 MIT_AAA_Arch MIT: doma 74.2 26 0.00056 24.7 6.8 24 481-504 9-32 (75)
422 KOG2062 26S proteasome regulat 74.2 1.2E+02 0.0026 32.0 21.3 147 358-528 507-658 (929)
423 KOG0128 RNA-binding protein SA 74.1 1.3E+02 0.0028 32.2 29.3 277 178-490 96-393 (881)
424 PF10255 Paf67: RNA polymerase 74.0 6.8 0.00015 38.1 5.4 60 445-505 123-191 (404)
425 PF09670 Cas_Cas02710: CRISPR- 73.9 48 0.001 32.5 11.3 62 446-507 133-198 (379)
426 PF12739 TRAPPC-Trs85: ER-Golg 73.1 1E+02 0.0023 30.7 16.1 94 478-584 300-403 (414)
427 PF09205 DUF1955: Domain of un 73.0 36 0.00078 27.1 8.0 60 164-223 89-148 (161)
428 KOG4279 Serine/threonine prote 72.5 1.3E+02 0.0029 31.7 14.1 67 298-366 259-334 (1226)
429 KOG4279 Serine/threonine prote 72.4 97 0.0021 32.6 12.9 123 265-403 195-335 (1226)
430 KOG2063 Vacuolar assembly/sort 70.7 1.7E+02 0.0037 32.1 18.4 165 320-506 507-712 (877)
431 KOG1497 COP9 signalosome, subu 70.5 93 0.002 29.0 17.0 92 444-537 103-208 (399)
432 KOG1497 COP9 signalosome, subu 70.2 69 0.0015 29.8 10.3 96 478-579 103-212 (399)
433 COG5536 BET4 Protein prenyltra 69.4 92 0.002 28.5 10.9 128 460-587 90-229 (328)
434 PF11846 DUF3366: Domain of un 69.1 17 0.00036 31.6 6.4 46 533-582 130-175 (193)
435 PF09205 DUF1955: Domain of un 69.0 24 0.00053 28.0 6.3 51 490-542 98-148 (161)
436 PF12921 ATP13: Mitochondrial 68.8 57 0.0012 25.9 10.4 64 160-223 1-80 (126)
437 KOG0546 HSP90 co-chaperone CPR 67.8 9.8 0.00021 35.7 4.7 109 450-560 228-355 (372)
438 KOG4521 Nuclear pore complex, 67.7 1.6E+02 0.0034 33.0 13.7 186 388-581 920-1133(1480)
439 PHA02537 M terminase endonucle 66.2 79 0.0017 28.2 9.8 23 398-420 93-115 (230)
440 KOG2063 Vacuolar assembly/sort 66.1 2.1E+02 0.0046 31.4 19.6 179 273-472 506-712 (877)
441 PRK12798 chemotaxis protein; R 65.8 1.4E+02 0.003 29.3 24.9 223 172-414 92-321 (421)
442 PF04348 LppC: LppC putative l 65.3 2.1 4.5E-05 44.0 0.0 117 300-417 7-127 (536)
443 smart00299 CLH Clathrin heavy 64.7 73 0.0016 25.7 14.3 31 331-362 21-51 (140)
444 COG4941 Predicted RNA polymera 64.5 1.3E+02 0.0028 28.4 16.7 189 332-555 211-406 (415)
445 PF10037 MRP-S27: Mitochondria 64.3 36 0.00078 33.7 8.1 83 161-244 103-186 (429)
446 cd02682 MIT_AAA_Arch MIT: doma 64.2 20 0.00044 25.2 4.7 36 9-44 5-40 (75)
447 smart00299 CLH Clathrin heavy 63.7 77 0.0017 25.5 15.5 51 359-412 14-64 (140)
448 PHA02537 M terminase endonucle 63.1 91 0.002 27.8 9.6 41 264-316 162-211 (230)
449 COG3107 LppC Putative lipoprot 62.8 1.8E+02 0.0039 29.5 15.1 76 339-415 50-126 (604)
450 PF14863 Alkyl_sulf_dimr: Alky 61.2 30 0.00066 28.1 5.9 52 315-367 68-119 (141)
451 KOG4014 Uncharacterized conser 58.7 1.2E+02 0.0025 25.9 14.7 109 272-399 35-155 (248)
452 cd02680 MIT_calpain7_2 MIT: do 58.0 24 0.00052 24.9 4.2 18 401-418 19-36 (75)
453 PF14863 Alkyl_sulf_dimr: Alky 57.9 37 0.0008 27.6 5.9 48 445-492 71-118 (141)
454 COG5536 BET4 Protein prenyltra 57.1 1.6E+02 0.0034 27.1 10.9 118 441-558 105-237 (328)
455 KOG0687 26S proteasome regulat 56.4 1.8E+02 0.0039 27.4 14.2 30 388-417 104-133 (393)
456 PRK12798 chemotaxis protein; R 56.4 2.1E+02 0.0045 28.2 23.5 229 202-470 87-321 (421)
457 KOG0889 Histone acetyltransfer 56.1 5.7E+02 0.012 33.2 23.6 136 444-581 2736-2884(3550)
458 KOG0292 Vesicle coat complex C 56.0 3E+02 0.0066 30.0 16.6 42 298-345 659-700 (1202)
459 KOG4521 Nuclear pore complex, 55.9 3.5E+02 0.0075 30.6 17.0 130 394-546 989-1135(1480)
460 KOG0687 26S proteasome regulat 55.1 1.9E+02 0.0041 27.3 15.3 102 317-418 104-211 (393)
461 COG4941 Predicted RNA polymera 54.9 1.9E+02 0.0042 27.4 17.9 164 248-418 212-395 (415)
462 cd02679 MIT_spastin MIT: domai 54.0 79 0.0017 22.6 6.9 36 9-44 7-42 (79)
463 PF11846 DUF3366: Domain of un 54.0 43 0.00094 29.0 6.3 47 462-509 129-175 (193)
464 PF04840 Vps16_C: Vps16, C-ter 53.8 2.1E+02 0.0044 27.3 19.5 201 181-413 71-287 (319)
465 COG5187 RPN7 26S proteasome re 53.7 1.9E+02 0.004 26.8 12.9 65 353-417 116-184 (412)
466 cd02680 MIT_calpain7_2 MIT: do 52.7 31 0.00068 24.3 4.1 18 456-473 18-35 (75)
467 PF13226 DUF4034: Domain of un 52.4 1.3E+02 0.0029 27.8 9.1 111 452-563 8-148 (277)
468 PRK09687 putative lyase; Provi 51.7 2E+02 0.0044 26.7 25.7 225 314-585 34-268 (280)
469 PF04212 MIT: MIT (microtubule 51.7 31 0.00068 23.7 4.1 33 12-44 7-39 (69)
470 smart00777 Mad3_BUB1_I Mad3/BU 51.0 76 0.0016 25.2 6.5 41 372-412 83-123 (125)
471 PF08238 Sel1: Sel1 repeat; I 50.1 35 0.00076 19.8 3.7 33 548-580 1-37 (39)
472 smart00745 MIT Microtubule Int 49.9 89 0.0019 22.0 6.5 53 60-112 3-62 (77)
473 KOG4422 Uncharacterized conser 49.3 2.7E+02 0.0059 27.4 41.4 431 73-543 125-590 (625)
474 PF14852 Fis1_TPR_N: Fis1 N-te 49.0 27 0.00058 20.3 2.8 31 550-580 3-33 (35)
475 KOG2758 Translation initiation 48.8 2.4E+02 0.0051 26.6 21.3 70 311-380 123-195 (432)
476 PF12739 TRAPPC-Trs85: ER-Golg 48.4 2.9E+02 0.0063 27.5 16.4 109 297-419 277-401 (414)
477 PF04090 RNA_pol_I_TF: RNA pol 47.7 1.9E+02 0.0041 25.2 12.7 64 318-381 42-105 (199)
478 smart00671 SEL1 Sel1-like repe 47.4 38 0.00083 19.1 3.5 32 549-580 2-34 (36)
479 PF10952 DUF2753: Protein of u 47.4 93 0.002 24.4 6.1 66 447-512 4-88 (140)
480 KOG0686 COP9 signalosome, subu 47.2 2.9E+02 0.0062 27.1 13.9 96 444-541 150-256 (466)
481 PF04097 Nic96: Nup93/Nic96; 46.8 3.8E+02 0.0083 28.4 17.0 258 169-486 266-546 (613)
482 cd02683 MIT_1 MIT: domain cont 46.5 52 0.0011 23.4 4.5 35 10-44 6-40 (77)
483 KOG2561 Adaptor protein NUB1, 46.2 1.3E+02 0.0028 29.5 8.2 94 481-577 166-293 (568)
484 KOG4151 Myosin assembly protei 46.1 88 0.0019 33.1 7.7 110 394-521 59-170 (748)
485 KOG4151 Myosin assembly protei 46.0 60 0.0013 34.2 6.5 99 450-550 59-163 (748)
486 KOG2908 26S proteasome regulat 45.6 1.1E+02 0.0024 28.8 7.5 89 169-260 83-182 (380)
487 TIGR02710 CRISPR-associated pr 45.5 3E+02 0.0066 26.9 11.6 54 450-503 136-196 (380)
488 cd02681 MIT_calpain7_1 MIT: do 44.7 50 0.0011 23.4 4.1 34 10-43 6-39 (76)
489 PF12921 ATP13: Mitochondrial 44.3 1.6E+02 0.0035 23.4 9.8 79 318-397 3-97 (126)
490 COG4259 Uncharacterized protei 44.1 1.4E+02 0.0029 22.5 9.1 36 158-193 69-104 (121)
491 cd02678 MIT_VPS4 MIT: domain c 43.8 1.1E+02 0.0025 21.5 6.3 54 61-114 2-62 (75)
492 PF10952 DUF2753: Protein of u 43.6 1.6E+02 0.0035 23.2 8.1 81 391-478 4-88 (140)
493 cd00280 TRFH Telomeric Repeat 42.9 2.2E+02 0.0047 24.4 8.9 63 298-363 85-155 (200)
494 PF08311 Mad3_BUB1_I: Mad3/BUB 42.1 1.7E+02 0.0038 23.2 14.4 83 331-415 40-126 (126)
495 PF10037 MRP-S27: Mitochondria 40.2 3.9E+02 0.0086 26.7 13.2 107 155-263 60-169 (429)
496 PF07219 HemY_N: HemY protein 40.1 1.6E+02 0.0035 22.5 6.8 49 445-493 60-108 (108)
497 TIGR03362 VI_chp_7 type VI sec 39.7 3.3E+02 0.0072 25.7 15.1 138 311-472 94-278 (301)
498 COG4259 Uncharacterized protei 39.5 1.6E+02 0.0035 22.1 7.2 52 300-351 55-106 (121)
499 PF04762 IKI3: IKI3 family; I 39.2 6.1E+02 0.013 28.6 16.4 129 300-469 796-926 (928)
500 PF14929 TAF1_subA: TAF RNA Po 39.0 4.7E+02 0.01 27.2 13.5 157 368-561 300-468 (547)
No 1
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-52 Score=399.52 Aligned_cols=582 Identities=41% Similarity=0.589 Sum_probs=519.4
Q ss_pred CchhHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChh
Q 007775 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPR 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 80 (590)
|+-|+.++.++..+.+...+.+.|++.+|.+.|+.+|++++.....+.++.......++.++..+.+.++.+|.+.+..+
T Consensus 165 ~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~ 244 (799)
T KOG4162|consen 165 MSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPK 244 (799)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCch
Confidence 45689999999999999999999999999999999999999988888777443344788999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCc
Q 007775 81 ETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD 160 (590)
Q Consensus 81 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 160 (590)
+++..|++++..+|+.++.+.+.++...+.++.+++.+.. .....+.+.+.++++.+++++.+..+.++.......+|
T Consensus 245 ~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd 322 (799)
T KOG4162|consen 245 EAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND 322 (799)
T ss_pred HHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch
Confidence 9999999999999999999999998888877666666543 22234556799999999999999888888888888899
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 007775 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (590)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~ 240 (590)
+.+|..|+.++.++|+++.+.++||++++......+.|+.++.+|...|....|+.++++.......|+++..++..+++
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmaskl 402 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKL 402 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999655669999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHH
Q 007775 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (590)
Q Consensus 241 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~ 320 (590)
|+...+..++++.+..+++.......+++.+.++..+|.+|..+...++.+..|.....++++.+++++ +.+|.|+.+.
T Consensus 403 c~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av-~~d~~dp~~i 481 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV-QFDPTDPLVI 481 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH-hcCCCCchHH
Confidence 999999999999999999997777777788899999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Q 007775 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (590)
Q Consensus 321 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~ 400 (590)
+.++.-|..+++.+.|+.+.+++++.++.+...+|..++.++...+++.+|+.+.+.+++..| +|.........+-..
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhhhchhhhhhhhh
Confidence 999999999999999999999999997776659999999999999999999999999999988 777777777788888
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhccccc-----------c-----------cccc--------c-------------ccc
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSD-----------K-----------RFYK--------G-------------SAN 437 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~-----------~-----------~~~~--------~-------------~~~ 437 (590)
.++.++|+..+...+..+...+...... . +..+ + ...
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 9999999999999999886332211100 0 0000 0 000
Q ss_pred ----cccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChh
Q 007775 438 ----HARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVP 513 (590)
Q Consensus 438 ----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 513 (590)
..+......|...+..+...+..++|..++.++-.+.|..+..|+..|.++...|++++|.+.|..++.++|+++.
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 0111224678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCCCCCC
Q 007775 514 SLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPVEPFR 590 (590)
Q Consensus 514 ~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~~f~ 590 (590)
+...+|.++.+.|+..+.++..++..+++.+|.++.+|+.+|.++...|+ .++|.++|..|+++++++|+.+|+
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd---~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD---SKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc---hHHHHHHHHHHHhhccCCCccccc
Confidence 99999999999999984444449999999999999999999999999999 999999999999999999999996
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4e-48 Score=359.26 Aligned_cols=385 Identities=19% Similarity=0.148 Sum_probs=368.0
Q ss_pred HhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChH
Q 007775 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (590)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~ 232 (590)
.+...|.-.+.|.+++.++...|++..|...++.++...|+..+.|..+|.++..+|+.+.|..+|.+++ ..+|+...
T Consensus 108 a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al--qlnP~l~c 185 (966)
T KOG4626|consen 108 AIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL--QLNPDLYC 185 (966)
T ss_pred hhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH--hcCcchhh
Confidence 3455677888999999999999999999999999999999999999999999999999999999999999 79998777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh
Q 007775 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (590)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 312 (590)
+....+ ......|+.++|...|.++++..|.-. .+|..+|.++..+|+ ...|+..|++++ ++
T Consensus 186 a~s~lg-nLlka~Grl~ea~~cYlkAi~~qp~fA-----iawsnLg~~f~~~Ge-----------i~~aiq~y~eAv-kl 247 (966)
T KOG4626|consen 186 ARSDLG-NLLKAEGRLEEAKACYLKAIETQPCFA-----IAWSNLGCVFNAQGE-----------IWLAIQHYEEAV-KL 247 (966)
T ss_pred hhcchh-HHHHhhcccchhHHHHHHHHhhCCcee-----eeehhcchHHhhcch-----------HHHHHHHHHHhh-cC
Confidence 766666 345667788899999999999999766 699999999999999 999999999999 99
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHH
Q 007775 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (590)
Q Consensus 313 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 392 (590)
+|+..++++++|.+|...+.+++|+.+|.+++...|++. .++-++|.+|..+|..+-|+..|+++++..| ..++++.
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-~a~gNla~iYyeqG~ldlAI~~Ykral~~~P--~F~~Ay~ 324 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-VAHGNLACIYYEQGLLDLAIDTYKRALELQP--NFPDAYN 324 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-hhccceEEEEeccccHHHHHHHHHHHHhcCC--CchHHHh
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999 7799999
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
++|..+...|+..+|..+|.+++... |..+++.++||.+|..+|++++|..+|.++++
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~----------------------p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLC----------------------PNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhC----------------------CccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 99999999999999999999999998 67799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHH
Q 007775 473 ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 473 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~ 552 (590)
.+|....++.++|.+|.++|++++|+.+|++++++.|...+++.++|..|..+|+.+ .|+..|.+++..+|...+++.
T Consensus 383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~--~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS--AAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH--HHHHHHHHHHhcCcHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhccccCCCCC
Q 007775 553 NLGLFYKSQGTQSSKLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 553 ~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~ 587 (590)
+||.+|...|+ ..+|+..|+.++++.|+.|.+
T Consensus 461 NLasi~kDsGn---i~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 461 NLASIYKDSGN---IPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred hHHHHhhccCC---cHHHHHHHHHHHccCCCCchh
Confidence 99999999999 999999999999999999976
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-46 Score=348.37 Aligned_cols=359 Identities=17% Similarity=0.078 Sum_probs=342.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHH
Q 007775 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (590)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~ 237 (590)
|.....|..++.++...|+.+.|..+|.++++.+|+...+...+|..+-..|+..+|...|.+++ ...|....++..+
T Consensus 147 p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi--~~qp~fAiawsnL 224 (966)
T KOG4626|consen 147 PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI--ETQPCFAIAWSNL 224 (966)
T ss_pred chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH--hhCCceeeeehhc
Confidence 56667788999999999999999999999999999999999999999999999999999999999 7888888888888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh
Q 007775 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (590)
Q Consensus 238 a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~ 317 (590)
+.+ +...|....|+..|+++++++|... .+|+++|.+|...+. +++|+.+|.+++ ...|++.
T Consensus 225 g~~-f~~~Gei~~aiq~y~eAvkldP~f~-----dAYiNLGnV~ke~~~-----------~d~Avs~Y~rAl-~lrpn~A 286 (966)
T KOG4626|consen 225 GCV-FNAQGEIWLAIQHYEEAVKLDPNFL-----DAYINLGNVYKEARI-----------FDRAVSCYLRAL-NLRPNHA 286 (966)
T ss_pred chH-HhhcchHHHHHHHHHHhhcCCCcch-----HHHhhHHHHHHHHhc-----------chHHHHHHHHHH-hcCCcch
Confidence 855 4556677799999999999999988 599999999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~ 397 (590)
.++-++|.+|..+|..+-|+..|+++++.+|+.+ +++.++|..+...|+..+|..+|.+++...| ..++..+++|.+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~-~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p--~hadam~NLgni 363 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP-DAYNNLANALKDKGSVTEAVDCYNKALRLCP--NHADAMNNLGNI 363 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhccchHHHHHHHHHHHHhCC--ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999 889999999999
Q ss_pred HHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 398 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
|..+|.+++|...|.++++.. |..+.++.+||.+|.++|++++|+.+|++++.+.|..
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~----------------------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVF----------------------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHhccchHHHHHHHHHHhhC----------------------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 999999999999999999998 6779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 007775 478 ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLF 557 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~ 557 (590)
++++.++|..|..+|+.+.|+++|.+++.++|...+++.+||.+|...|+.. +|+..|+.++++.|+.++++.++..+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~--~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP--EAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH--HHHHHHHHHHccCCCCchhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred HHHhCC
Q 007775 558 YKSQGT 563 (590)
Q Consensus 558 ~~~~g~ 563 (590)
+.-..+
T Consensus 500 lq~vcd 505 (966)
T KOG4626|consen 500 LQIVCD 505 (966)
T ss_pred HHHHhc
Confidence 877665
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-39 Score=358.22 Aligned_cols=518 Identities=20% Similarity=0.141 Sum_probs=329.4
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007775 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (590)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 89 (590)
..++...|.++...|++++|+..+..+++.. |. . ...+..++.++.+.|++++|+..|+++
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLD--------PD------D-----PAALSLLGEAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CC------C-----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456667777777777777777777765532 11 0 123344566666777777777777776
Q ss_pred hccCCCCChhhHHHHHHHHHHHHhhcC------------CCCCCC--CcccccCCccccCcchHHHHHHHHHHHHHHHhh
Q 007775 90 LLPCWNLDAETTAKLQKEFAIFLLYCG------------GETCPP--NLRSQMGSSFVPRNNIEEAILLLMILLRKVALK 155 (590)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~a~~ll~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 155 (590)
+... |+... ....++..++..+ ....|. .....+...+...+.+++|+..+.. ...
T Consensus 390 ~~~~--~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~ 459 (899)
T TIGR02917 390 TELD--PENAA---ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK-----LEK 459 (899)
T ss_pred HhcC--CCCHH---HHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHH-----HHH
Confidence 6551 11111 0011111111110 000111 0011222334556666666665532 223
Q ss_pred hcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHH
Q 007775 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (590)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~ 235 (590)
..|.++.++..++.++...|++++|...|++++...|.+...++.+|.++...|++++|+..|++++ ...|.+...+.
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~ 537 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL--TIDPKNLRAIL 537 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCcCcHHHHH
Confidence 4466666777777777777777777777777776667777777777777777777777777777776 45666666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCC
Q 007775 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (590)
Q Consensus 236 ~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~ 315 (590)
..+.++. ..|+.++|+..+++++...|.+. ..+..++..+...|+ +++|+..+++++ ...|.
T Consensus 538 ~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~-----------~~~A~~~~~~~~-~~~~~ 599 (899)
T TIGR02917 538 ALAGLYL-RTGNEEEAVAWLEKAAELNPQEI-----EPALALAQYYLGKGQ-----------LKKALAILNEAA-DAAPD 599 (899)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCccch-----hHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HcCCC
Confidence 5554433 34456667777776666666554 355556666666666 666666666666 66666
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHH
Q 007775 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (590)
Q Consensus 316 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la 395 (590)
++.++..+|.++...|++++|+..|+++++.+|.++ .++..++.++...|++++|+..++++++..| ++...+..++
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~ 676 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA-LALLLLADAYAVMKNYAKAITSLKRALELKP--DNTEAQIGLA 676 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHH
Confidence 666666666666666666666666666666666655 5666666666666666666666666666555 4455555555
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc-------------ccccccccccchHHHHHHHHHHHHHhcCChHH
Q 007775 396 KVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR-------------FYKGSANHARSLELEVWLDLAFIYINLSQWHD 462 (590)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 462 (590)
.++...|++++|+..++.+.+..|.....+..... .+. ......|.. ..+..++.++...|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR-KALKRAPSS-QNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH-HHHhhCCCc-hHHHHHHHHHHHCCCHHH
Confidence 55555555555555555555544433222111000 000 011111322 567778888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 463 AEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 463 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
|...+++++...|+++.+++.+|.++...|++++|+..|+++++..|+++.++..++.++...|+ . +|+.++++++.
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~--~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P--RALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H--HHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888 7 78888888888
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCCC
Q 007775 543 LDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 543 ~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~ 587 (590)
..|+++..+..+|.++...|+ +++|+.+|+++++.+|+++..
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGE---ADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChHH
Confidence 888888888888888888888 888888888888888887654
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5e-38 Score=346.62 Aligned_cols=499 Identities=19% Similarity=0.118 Sum_probs=332.9
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007775 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (590)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 89 (590)
..+++..|.++...|++++|...+..++... |.. + .+....+.++...|++++|+..|+++
T Consensus 227 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~--------------~~~~~~~~~~~~~~~~~~A~~~~~~~ 287 (899)
T TIGR02917 227 PAVLLALATILIEAGEFEEAEKHADALLKKA----PNS-P--------------LAHYLKALVDFQKKNYEDARETLQDA 287 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC-c--------------hHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4677888888888899998888887776642 111 0 11223345666777777777777777
Q ss_pred hccCCCCChhhHHHHH---------HHHHHHHhhcCCCCCCCC--cccccCCccccCcchHHHHHHHHHHHHHHHhhhcC
Q 007775 90 LLPCWNLDAETTAKLQ---------KEFAIFLLYCGGETCPPN--LRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIE 158 (590)
Q Consensus 90 l~~~~~~~~~~~~~~~---------~~~a~~ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 158 (590)
+... |+........ ...|...+.......|.. ....+...+...|.+++|+..+.. .+...|
T Consensus 288 l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~~~~~~ 360 (899)
T TIGR02917 288 LKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSP-----ALGLDP 360 (899)
T ss_pred HHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHH-----HHhcCC
Confidence 6652 1111000000 000000111100101111 011223345556677777766532 234456
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHH
Q 007775 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (590)
Q Consensus 159 ~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a 238 (590)
.++.++..++.++...|++++|.+.|++++...|.++..++.+|.++...|++++|+..|++++ ...|.........+
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~ 438 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA--QLDPELGRADLLLI 438 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH--hhCCcchhhHHHHH
Confidence 7777888888888888888888888888888888888888888888888888888888888888 45555555555454
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChH
Q 007775 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (590)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~ 318 (590)
.. +...++.++|+..+++.+...|.+. ..+..+|.++...|+ +++|+..|++++ ..+|.+..
T Consensus 439 ~~-~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~-----------~~~A~~~~~~a~-~~~~~~~~ 500 (899)
T TIGR02917 439 LS-YLRSGQFDKALAAAKKLEKKQPDNA-----SLHNLLGAIYLGKGD-----------LAKAREAFEKAL-SIEPDFFP 500 (899)
T ss_pred HH-HHhcCCHHHHHHHHHHHHHhCCCCc-----HHHHHHHHHHHhCCC-----------HHHHHHHHHHHH-hhCCCcHH
Confidence 33 3355677788888888777777665 477777888888888 788888888888 77888888
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 007775 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~ 398 (590)
+++.++.++...|++++|+..+++++...|.+. .++..++.++...|++++|..++++++...| .+...+..++.++
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 577 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL-RAILALAGLYLRTGNEEEAVAWLEKAAELNP--QEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchhHHHHHHHHH
Confidence 888888888888888888888888888888777 7777888888888888888888888877776 6666777778888
Q ss_pred HHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCH
Q 007775 399 LVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSA 478 (590)
Q Consensus 399 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 478 (590)
...|++++|+..+++++... |.++.+|..+|.++...|++++|+..|+++++..|.++
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 635 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA----------------------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 88888888888887777665 34455666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 479 SKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
.++..+|.++...|++++|+..|+++++.+|++..++..++.++...|+++ +|+.+++.+.+..|.++..+..+|.++
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE--SAKKIAKSLQKQHPKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCcCChHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666665 666666666666666666666666666
Q ss_pred HHhCCCCchHHHHHHHHHHhccccCC
Q 007775 559 KSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 559 ~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
...|+ +++|+..|++++...|++
T Consensus 714 ~~~g~---~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 714 LRQKD---YPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHCCC---HHHHHHHHHHHHhhCCCc
Confidence 66666 666666666666655544
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.8e-36 Score=332.13 Aligned_cols=510 Identities=13% Similarity=0.032 Sum_probs=351.7
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHH------HHHHHHHHHHHHhcCChhHHH
Q 007775 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETL------NRAVELLPELWKLADAPRETI 83 (590)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~ 83 (590)
.++++..+.++...|+.++|.+.+++.++..+ ++.... .....+ .+....++.++...|++++|+
T Consensus 62 p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P--------~~~~~~-~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~ 132 (1157)
T PRK11447 62 PDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP--------DSNAYR-SSRTTMLLSTPEGRQALQQARLLATTGRTEEAL 132 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--------CChHHH-HHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHH
Confidence 47778888888899999999998888776542 211000 000000 011234467899999999999
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhH
Q 007775 84 MSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI 163 (590)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 163 (590)
..|++++... |+...... .+.... ....+..++|+..+. ..+...|.++.+
T Consensus 133 ~~~~~~l~~~--p~~~~la~-------~y~~~~---------------~~~~g~~~~A~~~L~-----~ll~~~P~~~~~ 183 (1157)
T PRK11447 133 ASYDKLFNGA--PPELDLAV-------EYWRLV---------------AKLPAQRPEAINQLQ-----RLNADYPGNTGL 183 (1157)
T ss_pred HHHHHHccCC--CCChHHHH-------HHHHHH---------------hhCCccHHHHHHHHH-----HHHHhCCCCHHH
Confidence 9999999861 22211110 000000 112355678877763 345566889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcCCCCC----------------------------------chH-------------
Q 007775 164 LDHLSFAFSIAGDLSSLATQIEELLPGIIN----------------------------------RKE------------- 196 (590)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~----------------------------------~~~------------- 196 (590)
...++.++...|++++|...+++++...+. +..
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999887543221 100
Q ss_pred -------HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcch
Q 007775 197 -------RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (590)
Q Consensus 197 -------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 269 (590)
....+|..+...|++++|+..|++++ ..+|+++.++..++.+ +...+++++|+..++++++..|++....
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL--~~~P~~~~a~~~Lg~~-~~~~g~~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAV--RANPKDSEALGALGQA-YSQQGDRARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence 00134778899999999999999999 7899999999988855 4456788899999999999999865311
Q ss_pred h---------hHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 007775 270 E---------STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYA 340 (590)
Q Consensus 270 ~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 340 (590)
. ......+|.++...|+ +++|+..|++++ ..+|.++.++..+|.++...|++++|+..|
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~-----------~~eA~~~~~~Al-~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANN-----------LAQAERLYQQAR-QVDNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1 1123345778888999 999999999999 999999999999999999999999999999
Q ss_pred HHHHcccCCCcHHHHHHHHH------------------------------------------HHHHcCChHHHHHHHHHH
Q 007775 341 KMLLKLEGGSNLKGWLLMAR------------------------------------------ILSAQKRYEDAETILNAA 378 (590)
Q Consensus 341 ~~~l~~~p~~~~~~~~~la~------------------------------------------~~~~~g~~~~A~~~~~~a 378 (590)
+++++.+|++. .++..++. ++...|++++|+..|+++
T Consensus 409 ~~aL~~~p~~~-~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 409 QQALRMDPGNT-NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHHHhCCCCH-HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999987 66655444 445679999999999999
Q ss_pred HhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc-------------cc-----------
Q 007775 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY-------------KG----------- 434 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~----------- 434 (590)
++..| +++.+++.+|.++...|++++|+..++++++..|.++..+.....+. ..
T Consensus 488 l~~~P--~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 488 LALDP--GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 99999 88999999999999999999999999999999887765432211110 00
Q ss_pred ----------------------------ccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007775 435 ----------------------------SANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGV 486 (590)
Q Consensus 435 ----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 486 (590)
......|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~ 645 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIE 645 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 0001123344455555556666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH------HHHHHHHHHHHH
Q 007775 487 LYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS------SAWYNLGLFYKS 560 (590)
Q Consensus 487 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~------~~~~~l~~~~~~ 560 (590)
++...|++++|++.++++++..|+++.++..+|.++...|+++ +|+..|++++...|+++ .++..+|.++..
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~--eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~ 723 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA--AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ 723 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH--HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH
Confidence 6666666666666666555555555555555666665666655 56666666555544332 234445555556
Q ss_pred hCCCCchHHHHHHHHHHhcc
Q 007775 561 QGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 561 ~g~~~~~~~A~~~~~~al~l 580 (590)
.|+ +++|+..|++++..
T Consensus 724 ~G~---~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 724 TGQ---PQQALETYKDAMVA 740 (1157)
T ss_pred cCC---HHHHHHHHHHHHhh
Confidence 666 66666666665543
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.9e-35 Score=324.04 Aligned_cols=502 Identities=14% Similarity=0.051 Sum_probs=311.1
Q ss_pred HHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhc---------CCCCCCCccccchHHHH----------HHHHHHHHHH
Q 007775 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFA---------EGFPENLGADCKLQETL----------NRAVELLPEL 72 (590)
Q Consensus 12 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~----------~~~~~~l~~~ 72 (590)
..+.+|.++...|++++|++.|+++++..+.... ...+..+. ..-..+ ..+...++.+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~---~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP---EAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH---HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4577888999999999999999987654211000 00000000 000111 1244567889
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCChhhH-HHHHHHHHHHHhhcCCCCCCCCcc--cccCCccccCcchHHHHHHHHHHH
Q 007775 73 WKLADAPRETIMSYRRALLPCWNLDAETT-AKLQKEFAIFLLYCGGETCPPNLR--SQMGSSFVPRNNIEEAILLLMILL 149 (590)
Q Consensus 73 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~~~~~~~a~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~~~~ 149 (590)
+...|++++|+..|++++..+ +.... ..+... . +..... .+.... ......+......+.|...+...
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~---~~~~~aa~~~~~---~-l~~~~~-~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~- 261 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSP---AGRDAAAQLWYG---Q-IKDMPV-SDASVAALQKYLQVFSDGDSVAAARSQLAEQ- 261 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCC---CchHHHHHHHHH---H-HhccCC-ChhhHHHHHHHHHHCCCchHHHHHHHHHHHH-
Confidence 999999999999999998762 11110 000000 0 000000 000000 00000011111122222222110
Q ss_pred HHHHhhhcCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 007775 150 RKVALKRIEWDPS-ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (590)
Q Consensus 150 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p 228 (590)
...+.++. ....++.++...|++++|...|+++++..|.++.+++.+|.++...|++++|+..|++++ ...|
T Consensus 262 -----~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al--~~~p 334 (1157)
T PRK11447 262 -----QKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL--ALDP 334 (1157)
T ss_pred -----HHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCC
Confidence 01112222 222345566666666666666666666666666666666666666666666666666666 3444
Q ss_pred CChHH--------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHH
Q 007775 229 KCLPA--------------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDR 294 (590)
Q Consensus 229 ~~~~~--------------~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 294 (590)
++... ....+.. ....+++++|+..+++++..+|++. .++..+|.++...|+
T Consensus 335 ~~~~~~~~~~ll~~~~~~~~~~~g~~-~~~~g~~~eA~~~~~~Al~~~P~~~-----~a~~~Lg~~~~~~g~-------- 400 (1157)
T PRK11447 335 HSSNRDKWESLLKVNRYWLLIQQGDA-ALKANNLAQAERLYQQARQVDNTDS-----YAVLGLGDVAMARKD-------- 400 (1157)
T ss_pred CccchhHHHHHHHhhhHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCC--------
Confidence 32210 0111212 2244556666666666666666554 466666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHH------------------------------------------HHHHHHccC
Q 007775 295 ATRQAKALQALVSAARSTNMRDLSILYRL------------------------------------------SLEYAEQRK 332 (590)
Q Consensus 295 ~~~~~~A~~~~~~a~~~~~p~~~~~~~~l------------------------------------------a~~~~~~g~ 332 (590)
+++|+..|++++ +.+|.+..++..+ |..+...|+
T Consensus 401 ---~~eA~~~y~~aL-~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 401 ---YAAAERYYQQAL-RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred ---HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 666666666666 6666665544333 334455688
Q ss_pred HHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHH
Q 007775 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (590)
Q Consensus 333 ~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (590)
+++|+..|+++++.+|+++ .+++.++.++...|++++|+..++++++..| .++..++.++..+...+++++|+..++
T Consensus 477 ~~eA~~~~~~Al~~~P~~~-~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 477 WAQAAELQRQRLALDPGSV-WLTYRLAQDLRQAGQRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8888888888888888887 7888888888888888888888888887777 667777777766667777777766665
Q ss_pred HHHH----------------------------------------HHhhhhhcccc-cccccc-----------ccccccc
Q 007775 413 HLLA----------------------------------------ALQVQTKTFSS-DKRFYK-----------GSANHAR 440 (590)
Q Consensus 413 ~~l~----------------------------------------~~~~~~~~~~~-~~~~~~-----------~~~~~~~ 440 (590)
++.. ..|.++..... +..+.. +......
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~ 633 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE 633 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4321 12222211110 000000 1344556
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCh------hh
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHV------PS 514 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~ 514 (590)
|.++.++..++.++...|++++|+..++++++..|+++.++..+|.++...|++++|++.|++++...|+++ .+
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~ 713 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALV 713 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999876654 35
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHh---hcCCCHHHHHHHH
Q 007775 515 LISTAVVLRKLSDQSNAVIRSFLMAALR---LDGMNSSAWYNLG 555 (590)
Q Consensus 515 ~~~l~~~~~~~g~~~l~~A~~~~~~a~~---~~p~~~~~~~~l~ 555 (590)
+..+|.++...|+++ +|+..|++++. +.|..+...-.++
T Consensus 714 ~~~~a~~~~~~G~~~--~A~~~y~~Al~~~~~~~~~p~~~~~~~ 755 (1157)
T PRK11447 714 LRDAARFEAQTGQPQ--QALETYKDAMVASGITPTRPQDNDTFT 755 (1157)
T ss_pred HHHHHHHHHHcCCHH--HHHHHHHHHHhhcCCCCCCCCCchHHH
Confidence 667899999999999 99999999986 4577666533333
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.8e-35 Score=306.38 Aligned_cols=412 Identities=16% Similarity=0.104 Sum_probs=330.8
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHH
Q 007775 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (590)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a 141 (590)
....+...|..+++.|++++|+..|.+++.. .
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----~-------------------------------------------- 157 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----K-------------------------------------------- 157 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--------------------------------------------
Confidence 3445667788999999999999999888776 1
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 007775 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTL 221 (590)
Q Consensus 142 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 221 (590)
| ++..+..++.+|.+.|+++.|...+++++...|++..+|+.+|.+|...|++++|+..|..+
T Consensus 158 ----------------p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 158 ----------------P-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred ----------------C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 12346677888999999999999999999999999999999999999999999999998877
Q ss_pred hcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchh----------------------------hHH
Q 007775 222 LSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME----------------------------STA 273 (590)
Q Consensus 222 l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----------------------------~~~ 273 (590)
.. .++.+........... ....+...+..+++..|.+..... ...
T Consensus 221 ~~--~~~~~~~~~~~~~~~~-----l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 221 CI--IDGFRNEQSAQAVERL-----LKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HH--hCCCccHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 62 3322221111111000 012334444455554444321100 011
Q ss_pred HHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCC
Q 007775 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (590)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 350 (590)
+..+|..+... ...+.+++|+..|++++ .. .|....++..+|.++...|++++|+..++++++.+|..
T Consensus 294 ~~~l~~~~~e~--------~~~~~y~~A~~~~~~al-~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 294 QLQLGLKSPES--------KADESYEEAARAFEKAL-DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred hHHHHHHHHHh--------hhhhhHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 11121111100 11123899999999999 76 46777889999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc
Q 007775 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (590)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 430 (590)
. .++..+|.++...|++++|+..|+++++.+| +++.++..+|.++...|++++|+..|+++++.+
T Consensus 365 ~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------------ 429 (615)
T TIGR00990 365 T-QSYIKRASMNLELGDPDKAEEDFDKALKLNS--EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------------ 429 (615)
T ss_pred H-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------
Confidence 8 9999999999999999999999999999998 889999999999999999999999999999997
Q ss_pred ccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007775 431 FYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA 510 (590)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 510 (590)
|.+...+..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|+
T Consensus 430 ----------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 430 ----------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred ----------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 5668889999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ChhhH------HHHHHH-HHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 511 HVPSL------ISTAVV-LRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 511 ~~~~~------~~l~~~-~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
+...+ ...+.. +...|+++ +|+..++++++++|++..++..+|.++...|+ +++|+.+|++++++.++
T Consensus 500 ~~~~~~~~~~l~~~a~~~~~~~~~~~--eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~---~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 500 TKPMYMNVLPLINKALALFQWKQDFI--EAENLCEKALIIDPECDIAVATMAQLLLQQGD---VDEALKLFERAAELART 574 (615)
T ss_pred cccccccHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHhcc
Confidence 54332 222333 34468988 99999999999999999999999999999999 99999999999998775
Q ss_pred C
Q 007775 584 A 584 (590)
Q Consensus 584 ~ 584 (590)
.
T Consensus 575 ~ 575 (615)
T TIGR00990 575 E 575 (615)
T ss_pred H
Confidence 3
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=9.5e-33 Score=286.16 Aligned_cols=447 Identities=13% Similarity=0.021 Sum_probs=341.7
Q ss_pred HHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHH
Q 007775 5 AISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIM 84 (590)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 84 (590)
.....++.+..+|..+...|+|++|+..|.+++... |+ ...+..++.+|.+.|++++|+.
T Consensus 122 ~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~------------~~~~~n~a~~~~~l~~~~~Ai~ 181 (615)
T TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PD------------PVYYSNRAACHNALGDWEKVVE 181 (615)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------Cc------------hHHHHHHHHHHHHhCCHHHHHH
Confidence 344467889999999999999999999999988743 11 0235677889999999999999
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHH
Q 007775 85 SYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSIL 164 (590)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 164 (590)
.|.+++.. +|..... ....+. .+...|++++|+..+.... ...+.+....
T Consensus 182 ~~~~al~l----~p~~~~a-~~~~a~--------------------a~~~lg~~~eA~~~~~~~~-----~~~~~~~~~~ 231 (615)
T TIGR00990 182 DTTAALEL----DPDYSKA-LNRRAN--------------------AYDGLGKYADALLDLTASC-----IIDGFRNEQS 231 (615)
T ss_pred HHHHHHHc----CCCCHHH-HHHHHH--------------------HHHHcCCHHHHHHHHHHHH-----HhCCCccHHH
Confidence 99999987 4433211 111222 2455677888887653211 1111122111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHH--HHh
Q 007775 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK--ICG 242 (590)
Q Consensus 165 ~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~--~~~ 242 (590)
..+...+.. ..+......++...|.+...+..++..+ .......+...+.... ..++.........+. ...
T Consensus 232 ~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~e~ 304 (615)
T TIGR00990 232 AQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSN--ELDEETGNGQLQLGLKSPES 304 (615)
T ss_pred HHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhccc--ccccccccchHHHHHHHHHh
Confidence 111111111 2334445556666777766777777654 3333333444444444 233432222222221 222
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHH
Q 007775 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (590)
Q Consensus 243 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~ 322 (590)
...+.+++|+..|++++...+..+ ....++..+|.++..+|+ +++|+..|++++ ..+|.+..++..
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~--~~a~a~~~lg~~~~~~g~-----------~~eA~~~~~kal-~l~P~~~~~~~~ 370 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGE--KEAIALNLRGTFKCLKGK-----------HLEALADLSKSI-ELDPRVTQSYIK 370 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHH-HcCCCcHHHHHH
Confidence 345678899999999998753222 223689999999999999 999999999999 999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g 402 (590)
+|.++...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++..| ++...+..+|.++...|
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P--~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDP-DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP--DFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc--cCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999 9999999999999999999999999999999 78889999999999999
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH--
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK-- 480 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-- 480 (590)
++++|+..|++++... |.++.++..+|.++...|++++|+..|++++.+.|.+...
T Consensus 448 ~~~eA~~~~~~al~~~----------------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 448 SIASSMATFRRCKKNF----------------------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred CHHHHHHHHHHHHHhC----------------------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 9999999999999987 6668899999999999999999999999999999875332
Q ss_pred ----HHHHHH-HHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHH
Q 007775 481 ----CHATGV-LYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSS 549 (590)
Q Consensus 481 ----~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~ 549 (590)
+...+. ++...|++++|+..+++++.++|++..++..+|.++...|+++ +|+.+|++++++.+....
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~--eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD--EALKLFERAAELARTEGE 577 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHhccHHH
Confidence 222333 3344799999999999999999999999999999999999999 999999999999887554
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-33 Score=274.92 Aligned_cols=513 Identities=16% Similarity=0.114 Sum_probs=321.0
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007775 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (590)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 88 (590)
..=+++.||...+..|+|-.|+..|+.+|-+.+... |+. .++ ++-++.+.|+.+.|+..|.+
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~----aD~-----rIg---------ig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK----ADV-----RIG---------IGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC----CCc-----cch---------hhhHHHhccchhhHHHHHHH
Confidence 344566777778888888888888888777654332 221 111 23577888999999999999
Q ss_pred HhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHH
Q 007775 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS 168 (590)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 168 (590)
++.. +|. .......++.+.+.-. ....+..++.++. ......+.+|.+.+.|+
T Consensus 225 alqL----dp~-~v~alv~L~~~~l~~~-----------------d~~s~~~~~~ll~-----~ay~~n~~nP~~l~~LA 277 (1018)
T KOG2002|consen 225 ALQL----DPT-CVSALVALGEVDLNFN-----------------DSDSYKKGVQLLQ-----RAYKENNENPVALNHLA 277 (1018)
T ss_pred HHhc----Chh-hHHHHHHHHHHHHHcc-----------------chHHHHHHHHHHH-----HHHhhcCCCcHHHHHHH
Confidence 9988 663 3333334443322110 1112222322221 11222345555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHcCCCCCc---hHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCC-hHHHHHHHHHHhcC
Q 007775 169 FAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIASKICGEY 244 (590)
Q Consensus 169 ~~~~~~g~~~~a~~~~e~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~-~~~~~~~a~~~~~~ 244 (590)
..+.-.|++..+....+-++...... ++.+|.+|.+|..+|+|++|..+|.+++ ..+|++ ...++.++..++.
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~GlgQm~i~- 354 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLVGLGQMYIK- 354 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCccccccchhHHHHH-
Confidence 55555555555555555444433222 3335555555555555555555555555 344443 3344444444332
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCC--------
Q 007775 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD-------- 316 (590)
Q Consensus 245 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~-------- 316 (590)
.|+.+.|+.+|+++++..|++. .....+|.+|...+. .....++|..++.+++ ...|.+
T Consensus 355 ~~dle~s~~~fEkv~k~~p~~~-----etm~iLG~Lya~~~~-------~~~~~d~a~~~l~K~~-~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQLPNNY-----ETMKILGCLYAHSAK-------KQEKRDKASNVLGKVL-EQTPVDSEAWLELA 421 (1018)
T ss_pred hchHHHHHHHHHHHHHhCcchH-----HHHHHHHhHHHhhhh-------hhHHHHHHHHHHHHHH-hcccccHHHHHHHH
Confidence 2344455555555555555544 244444444444431 0001233333333333 333333
Q ss_pred ------------------------------hHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----cCCC---c-HHHHHH
Q 007775 317 ------------------------------LSILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGS---N-LKGWLL 357 (590)
Q Consensus 317 ------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~-~~~~~~ 357 (590)
++.+.++|..++..|++.+|...|..++.. +++. . +...++
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 455566666666666666666666666544 1111 0 023566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc-cc--
Q 007775 358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY-KG-- 434 (590)
Q Consensus 358 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~-~~-- 434 (590)
++.++...++++.|.+.|...++.+| ...+++..+|.+....+...+|...++.++..+..+++.+.....++ ..
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp--~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHP--GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCc--hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 66666666666666666666666666 55666666665666666666666666666666665555443222111 00
Q ss_pred -----------ccccccchHHHHHHHHHHHHHh------------cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007775 435 -----------SANHARSLELEVWLDLAFIYIN------------LSQWHDAEICLSKSEAISSYSASKCHATGVLYEKK 491 (590)
Q Consensus 435 -----------~~~~~~~~~~~~~~~la~~~~~------------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 491 (590)
........++-+...||+++++ .+.+++|+++|.+++..+|.|..+-+.+|.++...
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 0011112456677888887764 45678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHhCCCCchHH
Q 007775 492 GLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD--GMNSSAWYNLGLFYKSQGTQSSKLE 569 (590)
Q Consensus 492 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~~~~ 569 (590)
|++.+|...|.++.+-..++.++|.++|.||..+|+|. .|++.|+.+++.. .+++.++..||.++...|+ +.+
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~--~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~---~~e 734 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR--LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK---LQE 734 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh---HHH
Confidence 99999999999998877788899999999999999999 9999999999854 4678999999999999999 999
Q ss_pred HHHHHHHHhccccCCCCCCC
Q 007775 570 AAECFEAAASLEETAPVEPF 589 (590)
Q Consensus 570 A~~~~~~al~l~p~~~~~~f 589 (590)
|.++..+|+.+.|.++...|
T Consensus 735 ak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 735 AKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHHHHHhCCccchHHh
Confidence 99999999999999998766
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2e-31 Score=280.15 Aligned_cols=504 Identities=12% Similarity=-0.038 Sum_probs=310.3
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007775 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (590)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 88 (590)
...-+|.+|..+...|++++|+..|+++++.. |+ + ..++..|+.+|...|++++|+...++
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d--------P~------n-----~~~~~~LA~~yl~~g~~~~A~~~~~k 103 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQV--------PD------N-----IPLTLYLAEAYRHFGHDDRARLLLED 103 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC------C-----HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45678999999999999999999999999865 22 1 12446788999999999999999999
Q ss_pred HhccCCCCChhhHHHHHHHHHHH--------HhhcCCCCCCCCcc--cccCCc--------cccCcchHHHHHHHHHHHH
Q 007775 89 ALLPCWNLDAETTAKLQKEFAIF--------LLYCGGETCPPNLR--SQMGSS--------FVPRNNIEEAILLLMILLR 150 (590)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~a~~--------ll~~~~~~~~~~~~--~~~~~~--------~~~~~~~~~a~~~l~~~~~ 150 (590)
+++. +|...... ..++.+ .........|.... ..+... |... ++|...+.
T Consensus 104 Av~l----dP~n~~~~-~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~---- 171 (987)
T PRK09782 104 QLKR----HPGDARLE-RSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN---- 171 (987)
T ss_pred HHhc----CcccHHHH-HHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH----
Confidence 9998 44322111 111111 00000000011100 000000 2222 22222221
Q ss_pred HHHhhhcCC--chh-HHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHh-CCChHHHHHHHHHhhcCCC
Q 007775 151 KVALKRIEW--DPS-ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG-AGEDLVALNLLRTLLSGSE 226 (590)
Q Consensus 151 ~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~ 226 (590)
....+. ++. +...+..+|.+.|+++.+.+.+.++.+..|.+...+..++.+|.. .++ ++|+.+++..+ .
T Consensus 172 ---lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l--k- 244 (987)
T PRK09782 172 ---DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGI--F- 244 (987)
T ss_pred ---HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc--c-
Confidence 111122 233 333447777777777777777777777777777777777777776 366 66666655433 1
Q ss_pred CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhh-----------------------
Q 007775 227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSA----------------------- 283 (590)
Q Consensus 227 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~----------------------- 283 (590)
.++.....++.. +...|+.++|...+++.-...+..+... ...+.++.....
T Consensus 245 --~d~~l~~ala~~-yi~~G~~~~A~~~L~~~~~~~~~~~~~~--~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (987)
T PRK09782 245 --TDPQSRITYATA-LAYRGEKARLQHYLIENKPLFTTDAQEK--SWLYLLSKYSANPVQALANYTVQFADNRQYVVGAT 319 (987)
T ss_pred --cCHHHHHHHHHH-HHHCCCHHHHHHHHHhCcccccCCCccH--HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHH
Confidence 444555555543 3355566677777766544444322211 233333322111
Q ss_pred ------chhhcc--------------------C----------------------h----------HHHHHHHHHHHHHH
Q 007775 284 ------QSKVAI--------------------T----------------------D----------FDRATRQAKALQAL 305 (590)
Q Consensus 284 ------~~~~~~--------------------~----------------------~----------~~~~~~~~~A~~~~ 305 (590)
++.... . + .-..+..++|...|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred HHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 000000 0 0 00000111222222
Q ss_pred HHHHH----------------------------------------------------------------hhCCC--ChHH
Q 007775 306 VSAAR----------------------------------------------------------------STNMR--DLSI 319 (590)
Q Consensus 306 ~~a~~----------------------------------------------------------------~~~p~--~~~~ 319 (590)
+.+.. ...|. ++.+
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 21110 11122 3444
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~ 399 (590)
++.+|.++.. ++..+|+..+.+++...|++. ....++.++...|++++|+..++++....| . ...+..+|.++.
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~--~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~-~~a~~~la~all 553 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW--QHRAVAYQAYQVEDYATALAAWQKISLHDM--S-NEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH--HHHHHHHHHHHCCCHHHHHHHHHHHhccCC--C-cHHHHHHHHHHH
Confidence 4444444443 444445555555554444432 233344444455555555555555444322 1 122344455555
Q ss_pred HhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH
Q 007775 400 VQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS 479 (590)
Q Consensus 400 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 479 (590)
..|++++|+..|+++++.. |.....+..++......|++++|+..|+++++.+|+ +.
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~----------------------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~ 610 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG----------------------LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN 610 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC----------------------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH
Confidence 5555555555555555443 445566666666677779999999999999999996 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
++..+|.++.+.|++++|+..|++++..+|+++.++.++|.++...|+++ +|+..|+++++.+|+++.+++++|.++.
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e--eAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA--QSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhCCCCchHHHHHHHHHHhccccCCCCCCC
Q 007775 560 SQGTQSSKLEAAECFEAAASLEETAPVEPF 589 (590)
Q Consensus 560 ~~g~~~~~~~A~~~~~~al~l~p~~~~~~f 589 (590)
..|+ +++|+..|+++++++|++....+
T Consensus 689 ~lGd---~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 689 RLDD---MAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HCCC---HHHHHHHHHHHHhcCCCCchhhh
Confidence 9999 99999999999999998876543
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-31 Score=259.31 Aligned_cols=481 Identities=17% Similarity=0.154 Sum_probs=373.5
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCChhhHHH
Q 007775 26 FKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC--WNLDAETTAK 103 (590)
Q Consensus 26 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~ 103 (590)
+++|...|..+++.. |+ ++...+.+| .+.+..|+|..|+.+|++++... ..+|+.
T Consensus 146 ~~~A~a~F~~Vl~~s--------p~------Nil~LlGkA-----~i~ynkkdY~~al~yyk~al~inp~~~aD~r---- 202 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--------PD------NILALLGKA-----RIAYNKKDYRGALKYYKKALRINPACKADVR---- 202 (1018)
T ss_pred HHHHHHHHHHHHhhC--------Cc------chHHHHHHH-----HHHhccccHHHHHHHHHHHHhcCcccCCCcc----
Confidence 588888888877642 32 333344454 68889999999999999998871 222221
Q ss_pred HHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCC---HHHH
Q 007775 104 LQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD---LSSL 180 (590)
Q Consensus 104 ~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a 180 (590)
..+.-+|...+..+.|+..+. .++.-.|.++.++..|+.+-....+ +..+
T Consensus 203 ----------------------Igig~Cf~kl~~~~~a~~a~~-----ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 203 ----------------------IGIGHCFWKLGMSEKALLAFE-----RALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred ----------------------chhhhHHHhccchhhHHHHHH-----HHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 122334666777778877663 3444557777777777776555544 5678
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCC-CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007775 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED-PKCLPALLIASKICGEYPDLAEEGATFASRAL 259 (590)
Q Consensus 181 ~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l 259 (590)
...+.++....+.+|.+...++..++..|+|+.+..+...++..... +--...++..++.+. ..|++++|..+|.+++
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999843321 224455777886644 5678999999999999
Q ss_pred HHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcc----CHHH
Q 007775 260 ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR----KLNA 335 (590)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g----~~~~ 335 (590)
+.++++.. ..++.+|..|...|+ ++.|..+|++++ ...|++.++...+|.+|...+ ..+.
T Consensus 335 k~~~d~~~----l~~~GlgQm~i~~~d-----------le~s~~~fEkv~-k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 335 KADNDNFV----LPLVGLGQMYIKRGD-----------LEESKFCFEKVL-KQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccCCCCcc----ccccchhHHHHHhch-----------HHHHHHHHHHHH-HhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 99998732 588999999999999 999999999999 999999999999999999886 6788
Q ss_pred HHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---CCCCchHHHHHHHHHHHHhcCHhHHHHHHH
Q 007775 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT---GKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (590)
Q Consensus 336 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (590)
|..+..++++..|.+. .+|..++.++....-+.. +..|..++..- ..+--+++++++|..++..|++.+|...|.
T Consensus 399 a~~~l~K~~~~~~~d~-~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDS-EAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHHHHhcccccH-HHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 9999999999999988 999999988876644444 88887777431 111347788888888888888888888888
Q ss_pred HHHHHHh--hhhhc---cc------ccc------------cccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007775 413 HLLAALQ--VQTKT---FS------SDK------------RFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSK 469 (590)
Q Consensus 413 ~~l~~~~--~~~~~---~~------~~~------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 469 (590)
+++.... .+.+. .. .+. ..+ ..+...+|....++..+|......+...+|...+..
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y-k~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY-KSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 8887621 11111 00 000 000 034556677788888888777777888888888888
Q ss_pred HHhcCCCCHHHHHHHHHHHH------------------------------------------------HcCCHHHHHHHH
Q 007775 470 SEAISSYSASKCHATGVLYE------------------------------------------------KKGLYKEAIKAF 501 (590)
Q Consensus 470 a~~~~p~~~~~~~~l~~~~~------------------------------------------------~~g~~~~A~~~~ 501 (590)
++..+..+|.++..+|.++. ..+.+++|++.|
T Consensus 556 ~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 556 ALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred HHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 88887777777766665542 234568999999
Q ss_pred HHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 502 RSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 502 ~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
.++++.+|.+..+-+.+|.++...|++. +|+.+|.++.+--.+++.+|.++|.||..+|+ |..|++.|+.++...
T Consensus 636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~--~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q---y~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 636 GKVLRNDPKNMYAANGIGIVLAEKGRFS--EARDIFSQVREATSDFEDVWLNLAHCYVEQGQ---YRLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHhcCcchhhhccchhhhhhhccCch--HHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 99999999998877888999999999999999 999999999998753
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=6.9e-32 Score=278.23 Aligned_cols=338 Identities=15% Similarity=0.060 Sum_probs=238.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 007775 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (590)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~ 243 (590)
....+....+.|++..|...++.++...|..+..++.+|.+....|++++|+..|++++ ..+|+++.++..++.++ .
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l--~~~P~~~~a~~~la~~l-~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLL--AVNVCQPEDVLLVASVL-L 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHH-H
Confidence 34455566677777777777777777777777777777777777777777777777777 56777777776666443 3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHH
Q 007775 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (590)
Q Consensus 244 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~l 323 (590)
..|+.++|+..+++++...|++. .++..++.++...|+ +++|+..+.+++ ...|+++.++..+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~-----~a~~~la~~l~~~g~-----------~~eA~~~~~~~~-~~~P~~~~a~~~~ 184 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNS-----QIFALHLRTLVLMDK-----------ELQAISLARTQA-QEVPPRGDMIATC 184 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHCCC-----------hHHHHHHHHHHH-HhCCCCHHHHHHH
Confidence 44566677777777777777665 467777777777777 777777777777 6777776666554
Q ss_pred HHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcC
Q 007775 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (590)
Q Consensus 324 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~ 403 (590)
+ .+...|++++|+..++++++.+|.........++.++...|++++|+..+++++...| +++.++..+|.++...|+
T Consensus 185 ~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p--~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 185 L-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL--DGAALRRSLGLAYYQSGR 261 (656)
T ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCC
Confidence 3 3666777777777777777666533213444556677777777777777777777766 667777777777777777
Q ss_pred HhH----HHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH
Q 007775 404 LKG----AVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS 479 (590)
Q Consensus 404 ~~~----A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 479 (590)
+++ |+..|+++++.+ |.++.++..+|.++...|++++|+..+++++..+|+++.
T Consensus 262 ~~eA~~~A~~~~~~Al~l~----------------------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFN----------------------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred chhhHHHHHHHHHHHHhhC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 764 677777777765 566777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
++..+|.++...|++++|+..|++++..+|+++..+..+|.++...|+++ +|+..|+++++.+|++.
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~d--eA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTS--EAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhChhhc
Confidence 77777777777777777777777777777776666666677777777776 77777777777777653
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.4e-31 Score=274.21 Aligned_cols=346 Identities=14% Similarity=0.019 Sum_probs=294.6
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHH
Q 007775 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (590)
Q Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 273 (590)
+..-....+......|++++|+..++.++ ...|+++.++..++ ++....|++++|+..+++++..+|++. .+
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l--~~~p~~~~~l~~l~-~~~l~~g~~~~A~~~l~~~l~~~P~~~-----~a 112 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRV--LTAKNGRDLLRRWV-ISPLASSQPDAVLQVVNKLLAVNVCQP-----ED 112 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHH--HhCCCchhHHHHHh-hhHhhcCCHHHHHHHHHHHHHhCCCCh-----HH
Confidence 33344556777888999999999999999 67888888887777 444567788899999999999999887 58
Q ss_pred HHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHH
Q 007775 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (590)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 353 (590)
+..+|.++...|+ +++|+..|++++ ..+|+++.++..++.++...|++++|+..+++++...|++. .
T Consensus 113 ~~~la~~l~~~g~-----------~~~Ai~~l~~Al-~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~ 179 (656)
T PRK15174 113 VLLVASVLLKSKQ-----------YATVADLAEQAW-LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-D 179 (656)
T ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-H
Confidence 8899999999999 899999999999 88999999999999999999999999999999888888887 6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccc
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (590)
++..++ .+...|++++|+..+++++...|. ........++.++...|++++|+..|++++...
T Consensus 180 a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--------------- 242 (656)
T PRK15174 180 MIATCL-SFLNKSRLPEDHDLARALLPFFAL-ERQESAGLAVDTLCAVGKYQEAIQTGESALARG--------------- 242 (656)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------
Confidence 666554 478889999999999998887652 223344566788889999999999999999886
Q ss_pred cccccccchHHHHHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 434 GSANHARSLELEVWLDLAFIYINLSQWHD----AEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 434 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
|.++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|
T Consensus 243 -------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 243 -------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred -------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5668888999999999999886 79999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCCCCC
Q 007775 510 AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPVEPF 589 (590)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~~f 589 (590)
+++.++..+|.++...|+++ +|+..|++++..+|+++..+..+|.++...|+ +++|+..|+++++.+|++...+|
T Consensus 316 ~~~~a~~~La~~l~~~G~~~--eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~---~deA~~~l~~al~~~P~~~~~~~ 390 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYT--AASDEFVQLAREKGVTSKWNRYAAAALLQAGK---TSEAESVFEHYIQARASHLPQSF 390 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCccchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhChhhchhhH
Confidence 99999999999999999988 99999999999999888777778889999999 99999999999999988765544
No 15
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.5e-30 Score=274.35 Aligned_cols=457 Identities=11% Similarity=-0.021 Sum_probs=360.8
Q ss_pred HHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 007775 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (590)
Q Consensus 14 ~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 93 (590)
...-..|.+.|++++|...|.... .++ ...++.+...|.+.|++++|+..|++|...|
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~----------~~d------------~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMP----------RRD------------CISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCC----------CCC------------cchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 333445667788888777665421 011 0235566778999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHh
Q 007775 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI 173 (590)
Q Consensus 94 ~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (590)
+.|+..++..+...++. .+..+.|..++.. ....+.+.|..+++.|..+|.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~------------------------~g~~~~a~~l~~~----~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 284 VDPDLMTITSVISACEL------------------------LGDERLGREMHGY----VVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred CCCChhHHHHHHHHHHh------------------------cCChHHHHHHHHH----HHHhCCccchHHHHHHHHHHHh
Confidence 99999998877655532 2445566555433 3334567899999999999999
Q ss_pred cCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 007775 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (590)
Q Consensus 174 ~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 253 (590)
+|+++.|.+.|+++.. ++..+|+.+...|.+.|++++|+++|+++...+..|+.......+... ...+..++|.+
T Consensus 336 ~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~--~~~g~~~~a~~ 410 (857)
T PLN03077 336 LGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC--ACLGDLDVGVK 410 (857)
T ss_pred cCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH--hccchHHHHHH
Confidence 9999999999998753 578899999999999999999999999998777888866655555422 36778889999
Q ss_pred HHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCH
Q 007775 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (590)
Q Consensus 254 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~ 333 (590)
++..+.+....... .++..+...|.+.|+ +++|.+.|+++. ..+..+|..+...|...|+.
T Consensus 411 l~~~~~~~g~~~~~----~~~n~Li~~y~k~g~-----------~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 411 LHELAERKGLISYV----VVANALIEMYSKCKC-----------IDKALEVFHNIP----EKDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHHHHhCCCcch----HHHHHHHHHHHHcCC-----------HHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCH
Confidence 99999987654332 588889999999999 999999999876 45677899999999999999
Q ss_pred HHHHHHHHHHHcccCCCcHHHHH-----------------------------------HHHHHHHHcCChHHHHHHHHHH
Q 007775 334 NAAHYYAKMLLKLEGGSNLKGWL-----------------------------------LMARILSAQKRYEDAETILNAA 378 (590)
Q Consensus 334 ~~A~~~~~~~l~~~p~~~~~~~~-----------------------------------~la~~~~~~g~~~~A~~~~~~a 378 (590)
++|+..|+++....+.+. .++. .+...|.+.|+.++|...|+.+
T Consensus 472 ~eA~~lf~~m~~~~~pd~-~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLLTLKPNS-VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHhCCCCCH-hHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999875422222 2333 3446677777777777777765
Q ss_pred HhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcC
Q 007775 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLS 458 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 458 (590)
+ .+...|+.+...|...|+.++|+++|+++.+... ..+..++..+...+.+.|
T Consensus 551 ----~--~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~---------------------~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 551 ----E--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV---------------------NPDEVTFISLLCACSRSG 603 (857)
T ss_pred ----C--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------CCCcccHHHHHHHHhhcC
Confidence 2 4567888888899999999999999998886531 334567778888899999
Q ss_pred ChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHH
Q 007775 459 QWHDAEICLSKSEAISS--YSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSF 536 (590)
Q Consensus 459 ~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~ 536 (590)
++++|..+|+.+.+..+ .+...|..+..++.+.|++++|.+.++++ ...|+ +.+|..+...+...|+.+ .++..
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e--~~e~~ 679 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVE--LGELA 679 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChH--HHHHH
Confidence 99999999999884432 24578899999999999999999999986 35555 678888888888889988 89999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 537 LMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 537 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
.+++++++|+++..+..++.+|...|+ |++|.+..+...+
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~---~~~a~~vr~~M~~ 719 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGK---WDEVARVRKTMRE 719 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCC---hHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999887754
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.8e-28 Score=257.90 Aligned_cols=361 Identities=12% Similarity=-0.007 Sum_probs=302.1
Q ss_pred cCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCC---ChHHHHHHHHHHhcCC-----
Q 007775 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK---CLPALLIASKICGEYP----- 245 (590)
Q Consensus 174 ~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~---~~~~~~~~a~~~~~~~----- 245 (590)
.+.+.++........+..|.+......++....+.|++++|..+|+.+.. ..++ .......++.++..+.
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYP--FQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC--CCcccccCHHHHHHHHHHHHhCCcccch
Confidence 36677777777777787788999999999999999999999999999984 2222 1122223333433321
Q ss_pred -------------------CCHHH---HHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHH
Q 007775 246 -------------------DLAEE---GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (590)
Q Consensus 246 -------------------~~~~~---A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~ 303 (590)
+...+ +...+.+++...|. .....++..+|.++.. ++ ..+|+.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~---~~~~~a~~~LG~~l~~-~~-----------~~eAi~ 497 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSP---SYDAAAWNRLAKCYRD-TL-----------PGVALY 497 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCC---CCCHHHHHHHHHHHHh-CC-----------cHHHHH
Confidence 11212 23333344444444 1123699999999987 77 889999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 007775 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 304 ~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 383 (590)
.+.+++ ...|++. ....+|..+...|++++|+..|+++....|.+ ..+..+|.++...|++++|+.+++++++..|
T Consensus 498 a~~~Al-~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~qAL~l~P 573 (987)
T PRK09782 498 AWLQAE-QRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQQAEQRGL 573 (987)
T ss_pred HHHHHH-HhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999 8888754 46667788889999999999999998876664 4678999999999999999999999999987
Q ss_pred CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHH
Q 007775 384 KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDA 463 (590)
Q Consensus 384 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 463 (590)
.....+..++......|++++|+..|+++++.+ |. ..++..+|.++.+.|++++|
T Consensus 574 --~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~----------------------P~-~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 574 --GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA----------------------PS-ANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred --ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------CC-HHHHHHHHHHHHHCCCHHHH
Confidence 666666666666667799999999999999997 54 78999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Q 007775 464 EICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 464 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+++ +|+..|++++++
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~--eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA--ATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 544 DGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 544 ~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+|++..+....|.+.....+ ++.|.+.++++..++|+..
T Consensus 707 ~P~~a~i~~~~g~~~~~~~~---~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 707 IDNQALITPLTPEQNQQRFN---FRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCCCchhhhhhhHHHHHHHH---HHHHHHHHHHHhhcCccch
Confidence 99999999999999999999 9999999999999998764
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=6.3e-29 Score=262.02 Aligned_cols=407 Identities=15% Similarity=-0.017 Sum_probs=323.8
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhC
Q 007775 129 GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA 208 (590)
Q Consensus 129 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~ 208 (590)
..+..-.|..++|+..+.. .....|.....+..++.++...|++++|...+++++...|.++..+..++.++...
T Consensus 22 ~~ia~~~g~~~~A~~~~~~-----~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNR-----YRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHcCCHHHHHHHHHH-----HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3345557788888755532 22223566667899999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhc
Q 007775 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (590)
Q Consensus 209 g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 288 (590)
|++++|+..+++++ ...|+++. +..++.++ ...++.++|+..++++++..|++. .++..++.++...+.
T Consensus 97 g~~~eA~~~l~~~l--~~~P~~~~-~~~la~~l-~~~g~~~~Al~~l~~al~~~P~~~-----~~~~~la~~l~~~~~-- 165 (765)
T PRK10049 97 GQYDEALVKAKQLV--SGAPDKAN-LLALAYVY-KRAGRHWDELRAMTQALPRAPQTQ-----QYPTEYVQALRNNRL-- 165 (765)
T ss_pred CCHHHHHHHHHHHH--HhCCCCHH-HHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCC--
Confidence 99999999999999 67888888 77777554 456788899999999999999877 577788888888888
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhhCCCCh-----HHHHHHHHHHH-----HccCH---HHHHHHHHHHHcccCCCc---H
Q 007775 289 ITDFDRATRQAKALQALVSAARSTNMRDL-----SILYRLSLEYA-----EQRKL---NAAHYYAKMLLKLEGGSN---L 352 (590)
Q Consensus 289 ~~~~~~~~~~~~A~~~~~~a~~~~~p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~p~~~---~ 352 (590)
.++|+..++++. . .|... .....+..... ..+++ ++|+..++.+++..|.++ .
T Consensus 166 ---------~e~Al~~l~~~~-~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 166 ---------SAPALGAIDDAN-L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred ---------hHHHHHHHHhCC-C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 888999888776 4 43321 11122222222 22334 788999999986644332 0
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHhccCC-CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccc
Q 007775 353 ---KGWLLMARILSAQKRYEDAETILNAALDQTGK-WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSD 428 (590)
Q Consensus 353 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 428 (590)
.+.......+...|++++|+..|+++++..+. |.... ..++.++...|++++|+..|+++++..|...
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~------ 306 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPETIA------ 306 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC------
Confidence 11122123446779999999999999988642 23333 3469999999999999999999987653210
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCC
Q 007775 429 KRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS---------------ASKCHATGVLYEKKGL 493 (590)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~~~~~g~ 493 (590)
+........++.++...|++++|+..++++....|.. ..++..++.++...|+
T Consensus 307 ------------~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 307 ------------DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred ------------CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 1114567778888999999999999999999887632 3467889999999999
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHH
Q 007775 494 YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAEC 573 (590)
Q Consensus 494 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~ 573 (590)
+++|++.+++++...|+++.++..+|.++...|+++ +|+..+++++..+|+++.+++.+|.++...|+ +++|...
T Consensus 375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~--~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~---~~~A~~~ 449 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR--AAENELKKAEVLEPRNINLEVEQAWTALDLQE---WRQMDVL 449 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC---HHHHHHH
Confidence 999999999999999999999999999999999998 99999999999999999999999999999999 9999999
Q ss_pred HHHHhccccCCCCC
Q 007775 574 FEAAASLEETAPVE 587 (590)
Q Consensus 574 ~~~al~l~p~~~~~ 587 (590)
++++++..|+++.+
T Consensus 450 ~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 450 TDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHhCCCCHHH
Confidence 99999999999854
No 18
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.98 E-value=1.7e-28 Score=258.28 Aligned_cols=437 Identities=14% Similarity=0.047 Sum_probs=281.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcc-CCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHH
Q 007775 66 VELLPELWKLADAPRETIMSYRRALLP-CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (590)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 144 (590)
+..+...|.+.|++++|+..|+.|... +..|+..++..+...++.. +..+.+..+
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~------------------------~~~~~a~~l 145 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL------------------------KSIRCVKAV 145 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC------------------------CCHHHHHHH
Confidence 445566788999999999999999876 4678888887765555422 334455444
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 007775 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (590)
Q Consensus 145 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 224 (590)
+.. +...+...++.+++.|..+|.++|+++.|.+.|+++.. ++..+|+.+...|.+.|++++|+.+|+++...
T Consensus 146 ~~~----m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 146 YWH----VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHH----HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 432 22234566888999999999999999999999998754 57788999999999999999999999999866
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcc---------------------------hhhHHHHHH
Q 007775 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ---------------------------MESTANCLL 277 (590)
Q Consensus 225 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---------------------------~~~~~~~~l 277 (590)
+..|+.......+ ..|. ..+..+.+..++..+++........ ....+|..+
T Consensus 219 g~~p~~~t~~~ll-~a~~-~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~l 296 (697)
T PLN03081 219 GSDAEPRTFVVML-RASA-GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296 (697)
T ss_pred CCCCChhhHHHHH-HHHh-cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHH
Confidence 6666533322111 1211 2233334444444433322111100 000345555
Q ss_pred HHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccc-CCCcHHHHH
Q 007775 278 GISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWL 356 (590)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~ 356 (590)
...|...|+ .++|+..|+++.+..-..+..++..+...+.+.|++++|.+.+..+++.. +.+. .++.
T Consensus 297 i~~y~~~g~-----------~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~-~~~~ 364 (697)
T PLN03081 297 LAGYALHGY-----------SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANT 364 (697)
T ss_pred HHHHHhCCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe-eehH
Confidence 555555555 55555555555411122334455555555555555555555555555443 2222 4555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccccc
Q 007775 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSA 436 (590)
Q Consensus 357 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 436 (590)
.+...|.+.|++++|.++|+++.+ .+...|+.+...|.+.|+.++|++.|+++.+...
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~----------------- 422 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV----------------- 422 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------
Confidence 555556666666666666555432 2334566666666666666666666666655421
Q ss_pred ccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh
Q 007775 437 NHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS--YSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS 514 (590)
Q Consensus 437 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 514 (590)
..+..++..+...+...|+.++|.++|+.+.+..+ .+...|..+...+.+.|++++|.+.++++. ..| +..+
T Consensus 423 ----~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~ 496 (697)
T PLN03081 423 ----APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNM 496 (697)
T ss_pred ----CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHH
Confidence 33456677777778888888888888887765322 234567778888888888888888887652 334 3556
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 515 LISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 515 ~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
|..+...+...|+.+ .|...++++++..|++...|..++.+|...|+ +++|.+.++...+.
T Consensus 497 ~~~Ll~a~~~~g~~~--~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~---~~~A~~v~~~m~~~ 557 (697)
T PLN03081 497 WAALLTACRIHKNLE--LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR---QAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHcCCcH--HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC---HHHHHHHHHHHHHc
Confidence 888888888888887 88888888888888888888888888888888 88888888877654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=4.9e-28 Score=255.26 Aligned_cols=431 Identities=13% Similarity=0.036 Sum_probs=331.4
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHH
Q 007775 71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR 150 (590)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 150 (590)
.+..-.|+.++|+..|.++.... |.+. .....+|.. +...+.+++|+..+.
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~--~~~a---~~~~~lA~~--------------------~~~~g~~~~A~~~~~---- 73 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM--QLPA---RGYAAVAVA--------------------YRNLKQWQNSLTLWQ---- 73 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCH---HHHHHHHHH--------------------HHHcCCHHHHHHHHH----
Confidence 57778999999999999998631 1111 112223322 445567788888773
Q ss_pred HHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCC
Q 007775 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (590)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~ 230 (590)
..+...|.++.+...++.++...|++++|...+++++...|+++. |..+|.++...|++++|+..+++++ ...|++
T Consensus 74 -~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al--~~~P~~ 149 (765)
T PRK10049 74 -KALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL--PRAPQT 149 (765)
T ss_pred -HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCC
Confidence 345566889999999999999999999999999999999999999 9999999999999999999999999 789999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHH
Q 007775 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (590)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 310 (590)
.......+.+ +...+..++|+..++++.. .|.............+.......+. ....+....++|+..++.++
T Consensus 150 ~~~~~~la~~-l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~---~~~~r~~~ad~Al~~~~~ll- 223 (765)
T PRK10049 150 QQYPTEYVQA-LRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR---SEKERYAIADRALAQYDALE- 223 (765)
T ss_pred HHHHHHHHHH-HHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc---ChhHHHHHHHHHHHHHHHHH-
Confidence 9888888755 4467788889999987765 5442111111111112111211111 00111111378999999998
Q ss_pred hhCCCChHH-------HHH-HHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 007775 311 STNMRDLSI-------LYR-LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (590)
Q Consensus 311 ~~~p~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 382 (590)
...|.++.. ... ++ .+...|++++|+..|+++++..|..+..+...++.++...|++++|+.+|++++...
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 765544422 122 33 346779999999999999988754332455557999999999999999999999877
Q ss_pred CCC--CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccch--HHHHHHHHHHHHHhcC
Q 007775 383 GKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSL--ELEVWLDLAFIYINLS 458 (590)
Q Consensus 383 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g 458 (590)
|.. ........++.++...|++++|+..++++....|.....+.. ....|+ ...++..++.++...|
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~---------~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS---------PTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC---------CCCCCCchHHHHHHHHHHHHHHcC
Confidence 622 113556678888899999999999999999987654332221 111233 3467889999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 007775 459 QWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLM 538 (590)
Q Consensus 459 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~ 538 (590)
++++|+..+++++...|.++.++..+|.++...|++++|++.+++++.++|++..++..+|.++...|+++ +|+..++
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~--~A~~~~~ 451 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR--QMDVLTD 451 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcCCCHHHHH
Q 007775 539 AALRLDGMNSSAWY 552 (590)
Q Consensus 539 ~a~~~~p~~~~~~~ 552 (590)
++++..|+++.+..
T Consensus 452 ~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 452 DVVAREPQDPGVQR 465 (765)
T ss_pred HHHHhCCCCHHHHH
Confidence 99999999986654
No 20
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=1.1e-27 Score=258.27 Aligned_cols=430 Identities=13% Similarity=0.040 Sum_probs=329.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHH
Q 007775 66 VELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLL 145 (590)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 145 (590)
+..+...|.+.|++++|+.+|++|...|+.|+..++..+.+.|+. .+....+..+.
T Consensus 155 ~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~------------------------~~~~~~~~~~~ 210 (857)
T PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG------------------------IPDLARGREVH 210 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC------------------------ccchhhHHHHH
Confidence 345566788888889999999888888888888888776554431 11222333322
Q ss_pred HHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCC
Q 007775 146 MILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGS 225 (590)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 225 (590)
. .+...+.+.++.+++.|..+|.++|+++.|.+.|+++.. .+..+|+.+...|.+.|++++|+.+|+++...+
T Consensus 211 ~----~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 211 A----HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred H----HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 2 223345577889999999999999999999999998753 577899999999999999999999999999777
Q ss_pred CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHH
Q 007775 226 EDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQAL 305 (590)
Q Consensus 226 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 305 (590)
..|+......... .|. ..++.+.|.+++..+.+..-... ..++..+...|.+.|+ +++|.+.|
T Consensus 284 ~~Pd~~ty~~ll~-a~~-~~g~~~~a~~l~~~~~~~g~~~d----~~~~n~Li~~y~k~g~-----------~~~A~~vf 346 (857)
T PLN03077 284 VDPDLMTITSVIS-ACE-LLGDERLGREMHGYVVKTGFAVD----VSVCNSLIQMYLSLGS-----------WGEAEKVF 346 (857)
T ss_pred CCCChhHHHHHHH-HHH-hcCChHHHHHHHHHHHHhCCccc----hHHHHHHHHHHHhcCC-----------HHHHHHHH
Confidence 8888665554444 332 55678899999998887643322 2588899999999999 99999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 007775 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 306 ~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 383 (590)
+++. ..+..+|..+...|.+.|++++|+.+|+++.+. .|+. .++..+...+...|++++|.+++..+.+.+.
T Consensus 347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE--ITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc--eeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 9876 456788999999999999999999999988654 4664 4777788899999999999999999988765
Q ss_pred CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHH
Q 007775 384 KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDA 463 (590)
Q Consensus 384 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 463 (590)
. .+..++..+...|.+.|++++|.+.|+++.+. +..+|..+...|...|++++|
T Consensus 421 ~-~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-------------------------d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 421 I-SYVVVANALIEMYSKCKCIDKALEVFHNIPEK-------------------------DVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred C-cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-------------------------CeeeHHHHHHHHHHCCCHHHH
Confidence 3 45678889999999999999999999876432 256788888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHH-----------------------------------HHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007775 464 EICLSKSEAISSYSASKC-----------------------------------HATGVLYEKKGLYKEAIKAFRSALNID 508 (590)
Q Consensus 464 ~~~~~~a~~~~p~~~~~~-----------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~ 508 (590)
+..|+++....+.+..++ ..+...|.+.|+.++|...|+.+
T Consensus 475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---- 550 (857)
T PLN03077 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---- 550 (857)
T ss_pred HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----
Confidence 888888875433333322 33446677778888888888765
Q ss_pred CCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 509 PAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL--DGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 509 p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+.+..+|+.+...|.+.|+.+ +|+..|++..+. .|+ ..++..+-..+.+.|+ .++|.++|+...+..+-.|
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~--~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~---v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGS--MAVELFNRMVESGVNPD-EVTFISLLCACSRSGM---VTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh---HHHHHHHHHHHHHHhCCCC
Confidence 456778888888888888887 888888887763 454 4556666677888888 8888888888775444333
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-28 Score=219.88 Aligned_cols=386 Identities=15% Similarity=0.131 Sum_probs=305.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHh
Q 007775 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG 242 (590)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~ 242 (590)
.+-..|.-+.+.|.|++|+++|.+++...|+.+..|-+.+-||...|++++.++...+++ ..+|+...+++.++.. .
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL--El~P~Y~KAl~RRA~A-~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL--ELNPDYVKALLRRASA-H 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh--hcCcHHHHHHHHHHHH-H
Confidence 355677888999999999999999999999999999999999999999999999999999 7999988888888844 5
Q ss_pred cCCCCHHHHHHHHH------------------HHHHH---------cCCCCcchhhH---HHHHHHHHHhhc-----hhh
Q 007775 243 EYPDLAEEGATFAS------------------RALEC---------LGDGCDQMEST---ANCLLGISLSAQ-----SKV 287 (590)
Q Consensus 243 ~~~~~~~~A~~~~~------------------~~l~~---------~~~~~~~~~~~---~~~~l~~~~~~~-----~~~ 287 (590)
...|++++|+.-.. +.++. ...+.....+. .-...|...... ...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 56667767654332 11111 00000000000 011111100000 000
Q ss_pred ccChHHH-----------HHHHHHHHHHHHHHHHhh----CCCC---------hHHHHHHHHHHHHccCHHHHHHHHHHH
Q 007775 288 AITDFDR-----------ATRQAKALQALVSAARST----NMRD---------LSILYRLSLEYAEQRKLNAAHYYAKML 343 (590)
Q Consensus 288 ~~~~~~~-----------~~~~~~A~~~~~~a~~~~----~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~ 343 (590)
..++... ..-|.+|...+.+.. .. ...+ ..++...|..++..|+...|...|+.+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~-~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEEC-LGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHh-hhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0011000 112444444444332 11 0112 466777888899999999999999999
Q ss_pred HcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhh
Q 007775 344 LKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (590)
Q Consensus 344 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 423 (590)
|+++|.+. ..|..++.+|....+.++..+.|.++.+++| .++++|+..|.++.-.+++++|+.-|++++.++
T Consensus 353 I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp--~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~----- 424 (606)
T KOG0547|consen 353 IKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP--ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD----- 424 (606)
T ss_pred HhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC--CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-----
Confidence 99999988 7799999999999999999999999999999 899999999999999999999999999999998
Q ss_pred cccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 424 TFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
|.++..+..++.+..++++++++...|+++.+..|..++++...|.++..+++|++|++.|.+
T Consensus 425 -----------------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 425 -----------------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred -----------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCC------ChhhHHHHHHHHHH-cCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 007775 504 ALNIDPA------HVPSLISTAVVLRK-LSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEA 576 (590)
Q Consensus 504 al~~~p~------~~~~~~~l~~~~~~-~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~ 576 (590)
++.+.|. ++..+...|.+..+ .+++. .|+.+++++++++|.+..++..||.+..++|+ .++|+++|++
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~--~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEk 562 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQWKEDIN--QAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEK 562 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhchhhhHH--HHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHH
Confidence 9999998 66666666665554 35666 99999999999999999999999999999999 9999999999
Q ss_pred Hhcccc
Q 007775 577 AASLEE 582 (590)
Q Consensus 577 al~l~p 582 (590)
++.+..
T Consensus 563 sa~lAr 568 (606)
T KOG0547|consen 563 SAQLAR 568 (606)
T ss_pred HHHHHH
Confidence 987643
No 22
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=7.8e-27 Score=245.76 Aligned_cols=491 Identities=11% Similarity=-0.014 Sum_probs=373.8
Q ss_pred HhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 007775 17 AKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNL 96 (590)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 96 (590)
-..+...|++++|.+.|....... + ..|+ ...+..+...+.+.|+++.|..++..|+..|..|
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~----~-~~~~------------~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGC----P-FTLP------------ASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcC----C-CCCC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc
Confidence 344667799999999887643210 0 0122 1234555667888899999999999999999999
Q ss_pred ChhhHHHHHHHH--------HHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHH
Q 007775 97 DAETTAKLQKEF--------AIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS 168 (590)
Q Consensus 97 ~~~~~~~~~~~~--------a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 168 (590)
++.++..+...+ |..++..+.+. ....+..+...|+..|.+++|+.++..+.. .+..++..++..+.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~----~g~~p~~~t~~~ll 231 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWE----DGSDAEPRTFVVML 231 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHH----hCCCCChhhHHHHH
Confidence 988877764332 33344444321 111235666778889999999988866543 34466788889999
Q ss_pred HHHHhcCCHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCC
Q 007775 169 FAFSIAGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL 247 (590)
Q Consensus 169 ~~~~~~g~~~~a~~~~e~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~ 247 (590)
.++.+.|....+.+.+..+.+. ...+..+++.+...|.+.|++++|.++|+++. . + +...+..+... +...|+
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~--~-~~vt~n~li~~-y~~~g~ 305 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--E--K-TTVAWNSMLAG-YALHGY 305 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--C--C-ChhHHHHHHHH-HHhCCC
Confidence 9999999999988887766543 34678889999999999999999999999986 2 2 33444444433 336678
Q ss_pred HHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 007775 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY 327 (590)
Q Consensus 248 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~ 327 (590)
.++|+.+|+++....-... ...+..+...+...|+ +++|.+.+..+++...+.+..++..+...|
T Consensus 306 ~~eA~~lf~~M~~~g~~pd----~~t~~~ll~a~~~~g~-----------~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSID----QFTFSIMIRIFSRLAL-----------LEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred HHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 8999999999977543222 1488889999999999 999999999999333467788999999999
Q ss_pred HHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHH
Q 007775 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA 407 (590)
Q Consensus 328 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A 407 (590)
.+.|++++|.+.|+++.+ | +. .+|..+...|.+.|+.++|+++|+++.+....| +..++..+...+...|..++|
T Consensus 371 ~k~G~~~~A~~vf~~m~~--~-d~-~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR--K-NL-ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHCCCHHHHHHHHHhCCC--C-Ce-eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999864 3 45 799999999999999999999999999876544 556788899999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007775 408 VETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVL 487 (590)
Q Consensus 408 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 487 (590)
.++|+.+.+..+ ...+...|..+...|.+.|++++|.+.++++- ..| +..+|..+...
T Consensus 446 ~~~f~~m~~~~g--------------------~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a 503 (697)
T PLN03081 446 WEIFQSMSENHR--------------------IKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTA 503 (697)
T ss_pred HHHHHHHHHhcC--------------------CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHH
Confidence 999999987531 13346789999999999999999999998753 333 56779999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc--CCCHHHHHHHH-HHHH-HhCC
Q 007775 488 YEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD--GMNSSAWYNLG-LFYK-SQGT 563 (590)
Q Consensus 488 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~--p~~~~~~~~l~-~~~~-~~g~ 563 (590)
+...|+++.|...+++++++.|++...|..++.+|.+.|+++ +|.+.++...+.. +.....|..++ .++. -.|+
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~--~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA--EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH--HHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 999999999999999999999999999999999999999999 9999999887643 12222333222 1111 1121
Q ss_pred CCchHHHHHHHHHHhcc
Q 007775 564 QSSKLEAAECFEAAASL 580 (590)
Q Consensus 564 ~~~~~~A~~~~~~al~l 580 (590)
.+..+..+.|++.-++
T Consensus 582 -~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 582 -RLHPQSREIYQKLDEL 597 (697)
T ss_pred -CCCccHHHHHHHHHHH
Confidence 1256666666665554
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.8e-27 Score=212.41 Aligned_cols=240 Identities=14% Similarity=0.066 Sum_probs=221.4
Q ss_pred hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC
Q 007775 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (590)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 349 (590)
.+.++...|..+.-.|+ ...|...|++++ .++|.+...+..++.+|....+.++-...|.++.+++|.
T Consensus 325 ~A~al~~~gtF~fL~g~-----------~~~a~~d~~~~I-~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~ 392 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGD-----------SLGAQEDFDAAI-KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE 392 (606)
T ss_pred HHHHHHHhhhhhhhcCC-----------chhhhhhHHHHH-hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC
Confidence 45688888999999999 889999999999 999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccc
Q 007775 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (590)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 429 (590)
++ ++|+..|.+++-++++++|+.-|++++.++| ++...+..++.+.++++++++++..|+.+.+..
T Consensus 393 n~-dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p--e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF----------- 458 (606)
T KOG0547|consen 393 NP-DVYYHRGQMRFLLQQYEEAIADFQKAISLDP--ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF----------- 458 (606)
T ss_pred CC-chhHhHHHHHHHHHHHHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------
Confidence 99 9999999999999999999999999999999 889999999999999999999999999999997
Q ss_pred cccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 007775 430 RFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY------SASKCHATGVLYE-KKGLYKEAIKAFR 502 (590)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~-~~g~~~~A~~~~~ 502 (590)
|..++++...|.++..++++++|++.|..++.+.|. ++..+...|.+.. -.+++..|+.+++
T Consensus 459 -----------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 459 -----------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred -----------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 666899999999999999999999999999999998 5555555554433 3589999999999
Q ss_pred HHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 503 SALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 503 ~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
++++++|....++..||.+..++|+.+ +|+++|+++..+.....
T Consensus 528 KA~e~Dpkce~A~~tlaq~~lQ~~~i~--eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 528 KAIELDPKCEQAYETLAQFELQRGKID--EAIELFEKSAQLARTES 571 (606)
T ss_pred HHHccCchHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999988 99999999988765443
No 24
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=7.6e-25 Score=232.32 Aligned_cols=366 Identities=13% Similarity=0.012 Sum_probs=275.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHH
Q 007775 70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (590)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 149 (590)
...+.+.|..++|+.+|+.|.. |+..++..+... ++..+..++|..++..+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a------------------------~~k~g~~e~A~~lf~~M- 463 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV------------------------CASSQDIDGALRVLRLV- 463 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH------------------------HHhCcCHHHHHHHHHHH-
Confidence 3456667777777777776654 566665544333 34456777887776543
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCC-CCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 007775 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (590)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p 228 (590)
...+...|..+|+.|..+|.++|+++.|.+.|+++.... .++..+|..+...|.+.|++++|+.+|+++...+..|
T Consensus 464 ---~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 464 ---QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred ---HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 334457788899999999999999999999998887543 4578889999999999999999999999988666777
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHH
Q 007775 229 KCLPALLIASKICGEYPDLAEEGATFASRALECL-GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVS 307 (590)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 307 (590)
+......+.. .|. +.|..++|..++.++.... +-.++ ...|..+...|.+.|+ +++|.+.|++
T Consensus 541 D~vTYnsLI~-a~~-k~G~~deA~~lf~eM~~~~~gi~PD---~vTynaLI~ay~k~G~-----------ldeA~elf~~ 604 (1060)
T PLN03218 541 DRVVFNALIS-ACG-QSGAVDRAFDVLAEMKAETHPIDPD---HITVGALMKACANAGQ-----------VDRAKEVYQM 604 (1060)
T ss_pred CHHHHHHHHH-HHH-HCCCHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHHCCC-----------HHHHHHHHHH
Confidence 7443333332 332 5567889999998887631 11111 1477888888888998 8899999998
Q ss_pred HHHhhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC
Q 007775 308 AARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (590)
Q Consensus 308 a~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 384 (590)
+. +.+ +.+..+|..+...|.+.|++++|+.+|.++.+. .|+ . .+|..+...+.+.|++++|.++++.+.+....
T Consensus 605 M~-e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~-~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 605 IH-EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-E-VFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HH-HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 88 554 566788888999999999999999999988865 454 3 68888889999999999999999998877542
Q ss_pred CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHH
Q 007775 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAE 464 (590)
Q Consensus 385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 464 (590)
.+..++..+...|.+.|++++|.++|+++..... ..+..+|+.+...|.+.|++++|.
T Consensus 682 -pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~---------------------~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 682 -LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL---------------------RPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------------------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3567888899999999999999999988866431 334678899999999999999999
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007775 465 ICLSKSEAIS-SYSASKCHATGVLYEKKGLYKEAIKAFRSALNID 508 (590)
Q Consensus 465 ~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 508 (590)
++|+++.... ..+..+|..+...+.+.|++++|.+++.++.+..
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999887542 2346677777788888999999999998887643
No 25
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=5.5e-25 Score=233.37 Aligned_cols=408 Identities=11% Similarity=0.010 Sum_probs=327.1
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHH
Q 007775 71 ELWKLADAPRETIMSYRRALLPCWNL-DAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (590)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 149 (590)
..+.+.|++++|+.+|++|...++.+ +......+... +...+..++|+.++..+.
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~------------------------~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKA------------------------CKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH------------------------HHHCCCHHHHHHHHHHcC
Confidence 45668899999999999999886543 33323322221 233456778876653321
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 007775 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (590)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p 228 (590)
.++..+|+.+..++++.|+++.|.+.|+++.+. ..++..+|..+...|.+.|+.++|.++|+++...+..|
T Consensus 434 --------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 434 --------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred --------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 267889999999999999999999999998754 45688999999999999999999999999999766667
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHH
Q 007775 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (590)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 308 (590)
+... +..+...+ .+.|+.++|+.+|+++........ ...|..+...|.+.|+ +++|.+.|.++
T Consensus 506 dvvT-ynaLI~gy-~k~G~~eeAl~lf~~M~~~Gv~PD----~vTYnsLI~a~~k~G~-----------~deA~~lf~eM 568 (1060)
T PLN03218 506 NVHT-FGALIDGC-ARAGQVAKAFGAYGIMRSKNVKPD----RVVFNALISACGQSGA-----------VDRAFDVLAEM 568 (1060)
T ss_pred CHHH-HHHHHHHH-HHCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCC-----------HHHHHHHHHHH
Confidence 6433 33333233 366789999999999987543322 2589999999999999 99999999999
Q ss_pred HHhh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC
Q 007775 309 ARST---NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (590)
Q Consensus 309 ~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 384 (590)
. .. -..+..++..+...|.+.|++++|.++|+++.+.+. .+. .+|..+...|.+.|++++|.++|+++.+..-.
T Consensus 569 ~-~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~-~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 569 K-AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP-EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred H-HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 7 52 123567899999999999999999999999998763 345 79999999999999999999999999987543
Q ss_pred CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHH
Q 007775 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAE 464 (590)
Q Consensus 385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 464 (590)
| +...+..+...+.+.|++++|.++++++.+... +.+..+|..+...|.+.|++++|.
T Consensus 647 P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~---------------------~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 647 P-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGI---------------------KLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------------------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 3 467888999999999999999999999987642 455789999999999999999999
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 465 ICLSKSEAIS-SYSASKCHATGVLYEKKGLYKEAIKAFRSALNID-PAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 465 ~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
++|+++.... ..+...|..+...|.+.|++++|++.|+++.... ..+..++..+...+.+.|+++ +|..++.++.+
T Consensus 705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le--~A~~l~~~M~k 782 (1060)
T PLN03218 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD--VGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHH
Confidence 9999987642 3357889999999999999999999999987542 234667888889999999998 99999999987
Q ss_pred h--cCCCHHHHHHH
Q 007775 543 L--DGMNSSAWYNL 554 (590)
Q Consensus 543 ~--~p~~~~~~~~l 554 (590)
. .|+ ...+..+
T Consensus 783 ~Gi~pd-~~tynsL 795 (1060)
T PLN03218 783 DGIKPN-LVMCRCI 795 (1060)
T ss_pred cCCCCC-HHHHHHH
Confidence 4 343 3344433
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9.1e-28 Score=227.62 Aligned_cols=290 Identities=16% Similarity=0.138 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 007775 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY 327 (590)
Q Consensus 248 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~ 327 (590)
.++|+..|.+.-...++.. .+...+|..|+.+++ |++|..+|+.+- +..|-..+-.-....++
T Consensus 335 ~~~A~~~~~klp~h~~nt~-----wvl~q~GrayFEl~~-----------Y~~a~~~F~~~r-~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTG-----WVLSQLGRAYFELIE-----------YDQAERIFSLVR-RIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHhhHHhcCCch-----HHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-hhccccccchhHHHHHH
Confidence 3467777766444333333 577788888888888 888888888887 77776665554555555
Q ss_pred HHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHH
Q 007775 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA 407 (590)
Q Consensus 328 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A 407 (590)
+...+--+--.+.+..++.+|+.+ .+|..+|.+|.-+++++.|++.|+++++++| ....++..+|.-+....++|.|
T Consensus 398 WHLq~~v~Ls~Laq~Li~~~~~sP-esWca~GNcfSLQkdh~~Aik~f~RAiQldp--~faYayTLlGhE~~~~ee~d~a 474 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLIDTDPNSP-ESWCALGNCFSLQKDHDTAIKCFKRAIQLDP--RFAYAYTLLGHESIATEEFDKA 474 (638)
T ss_pred HHHHhhHHHHHHHHHHHhhCCCCc-HHHHHhcchhhhhhHHHHHHHHHHHhhccCC--ccchhhhhcCChhhhhHHHHhH
Confidence 555554444445566778899999 9999999999999999999999999999999 7888999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007775 408 VETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVL 487 (590)
Q Consensus 408 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 487 (590)
...|++++..+ |.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.+
T Consensus 475 ~~~fr~Al~~~----------------------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 475 MKSFRKALGVD----------------------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRI 532 (638)
T ss_pred HHHHHhhhcCC----------------------chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHH
Confidence 99999999998 67799999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCch
Q 007775 488 YEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSK 567 (590)
Q Consensus 488 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~ 567 (590)
+.+.|+.++|+.+|++|+.++|.++...+..|.++...++++ +|...+++..++-|++..+++.+|.+|.+.|+ .
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~--eal~~LEeLk~~vP~es~v~~llgki~k~~~~---~ 607 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV--EALQELEELKELVPQESSVFALLGKIYKRLGN---T 607 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH--HHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc---c
Confidence 999999999999999999999999999999999999999999 99999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHhccccCC
Q 007775 568 LEAAECFEAAASLEETA 584 (590)
Q Consensus 568 ~~A~~~~~~al~l~p~~ 584 (590)
+.|+..|.-|.+++|.-
T Consensus 608 ~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHhhHHHhcCCCcc
Confidence 99999999999999964
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.8e-25 Score=197.94 Aligned_cols=450 Identities=14% Similarity=0.079 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHH
Q 007775 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEE 140 (590)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (590)
+.....-.++..|+....++.|.-+++..... ....++-.+.++.....+.. ....+..+......
T Consensus 76 ~~~~~~y~laks~fd~kEf~Raa~fL~~~~s~--------k~~FL~lysk~La~~kk~~e------~~~~~l~~~~~~~~ 141 (559)
T KOG1155|consen 76 VLEKDIYLLAKSYFDCKEFERAAFFLQNCKSK--------KSAFLRLYSKYLAGEKKSEE------EMAELLGRLESFSR 141 (559)
T ss_pred hhhcchhhhHhhhhhhHHHHHHHHHHHhcchH--------HHHHHHHHHHHHhhhHHHHH------HHHHhhccchhhhh
Confidence 56666777889999999999998887765442 12222222222221111000 00000111111111
Q ss_pred HHHHHHHH---HHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 007775 141 AILLLMIL---LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNL 217 (590)
Q Consensus 141 a~~~l~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 217 (590)
-...|... +...- -+...|+..+...|.++...|..+.|...|-.++...|-.-.+|..++.+.. -++.
T Consensus 142 ~~~~l~~L~~~le~~~-~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit-------~~e~ 213 (559)
T KOG1155|consen 142 INSELIELNKPLESKH-CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT-------DIEI 213 (559)
T ss_pred hhhHHHHHhhHHHHHH-hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc-------hHHH
Confidence 11111111 11111 1224578888888999999999999999999998888888888888877643 2333
Q ss_pred HHHhhcCCCCC--CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-cCCCCcchhhHHHHHHHHHHhhchhhccChHHH
Q 007775 218 LRTLLSGSEDP--KCLPALLIASKICGEYPDLAEEGATFASRALEC-LGDGCDQMESTANCLLGISLSAQSKVAITDFDR 294 (590)
Q Consensus 218 ~~~~l~~~~~p--~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 294 (590)
....+ ..-| .+...-.....+ +......++++.-+++.... .|... ..-...|.+...+.+
T Consensus 214 ~~~l~--~~l~~~~h~M~~~F~~~a-~~el~q~~e~~~k~e~l~~~gf~~~~-----~i~~~~A~~~y~~rD-------- 277 (559)
T KOG1155|consen 214 LSILV--VGLPSDMHWMKKFFLKKA-YQELHQHEEALQKKERLSSVGFPNSM-----YIKTQIAAASYNQRD-------- 277 (559)
T ss_pred HHHHH--hcCcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCccH-----HHHHHHHHHHhhhhh--------
Confidence 33333 1222 233333333333 23334667788877777776 45444 455667777888888
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 007775 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (590)
Q Consensus 295 ~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 374 (590)
+++|+..|+... +.+|-..+-+-....++.-.++-.+---+.+.+..++.-.+ ++...+|+.|.-.++.++|+.+
T Consensus 278 ---fD~a~s~Feei~-knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~-ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 278 ---FDQAESVFEEIR-KNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP-ETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred ---HHHHHHHHHHHH-hcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc-cceeeehhHHHHHHhHHHHHHH
Confidence 999999999999 88887776666666666666665555555666777777777 8888999999999999999999
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHH
Q 007775 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIY 454 (590)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 454 (590)
|+++++++| ....+|..+|.-|..+.+...|++.|+++++++ |.|..+|+.+|+.|
T Consensus 353 FkRALkLNp--~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~----------------------p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 353 FKRALKLNP--KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN----------------------PRDYRAWYGLGQAY 408 (559)
T ss_pred HHHHHhcCc--chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC----------------------chhHHHHhhhhHHH
Confidence 999999999 778899999999999999999999999999998 77799999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHH
Q 007775 455 INLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 455 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
..++...=|+-+|+++....|+++..|..+|.||.+.++.++|+++|.+++.....+..++..+|.+|.++++.+ +|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~--eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN--EAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH--HHH
Confidence 999999999999999999999999999999999999999999999999999988888899999999999999998 999
Q ss_pred HHHHHHHh-------hcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 535 SFLMAALR-------LDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 535 ~~~~~a~~-------~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
.+|++.++ ..|....+...|+.-+.+.++ +++|..+..+++.-++
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~---~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD---FDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHhcCCc
Confidence 99999988 345556677779999999999 9999998888776544
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.9e-27 Score=224.18 Aligned_cols=306 Identities=16% Similarity=0.130 Sum_probs=234.8
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 007775 163 ILDHLSFAFSIAG--DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (590)
Q Consensus 163 ~~~~l~~~~~~~g--~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~ 240 (590)
++..++..|.... +..+|...|++.....++..-+..++|..|+..++|++|..+|+.+- ...|-.+...-....+
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r--~~~p~rv~~meiyST~ 396 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVR--RIEPYRVKGMEIYSTT 396 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccccccchhHHHHH
Confidence 3444454444433 34678888888555556666667788999999999999999998888 5666643333222222
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHH
Q 007775 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (590)
Q Consensus 241 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~ 320 (590)
.+ ...+.-+--.+.+..+..+|..+ ..|..+|+||..+++ ++.|+++|++++ +++|....++
T Consensus 397 LW-HLq~~v~Ls~Laq~Li~~~~~sP-----esWca~GNcfSLQkd-----------h~~Aik~f~RAi-Qldp~faYay 458 (638)
T KOG1126|consen 397 LW-HLQDEVALSYLAQDLIDTDPNSP-----ESWCALGNCFSLQKD-----------HDTAIKCFKRAI-QLDPRFAYAY 458 (638)
T ss_pred HH-HHHhhHHHHHHHHHHHhhCCCCc-----HHHHHhcchhhhhhH-----------HHHHHHHHHHhh-ccCCccchhh
Confidence 22 22222122233455666777777 588888888888888 888888888888 8888888888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Q 007775 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (590)
Q Consensus 321 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~ 400 (590)
..+|.-+.....++.|..+|+.++..+|.+. .+|+.+|.+|.++++++.|+-.|++|++++| .+..+...+|.++.+
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP--~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGVDPRHY-NAWYGLGTVYLKQEKLEFAEFHFQKAVEINP--SNSVILCHIGRIQHQ 535 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcCCchhh-HHHHhhhhheeccchhhHHHHHHHhhhcCCc--cchhHHhhhhHHHHH
Confidence 8888888888888888888888888888888 8888888888888888888888888888888 777777788888888
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
.|+.++|+.+|++|+.++ |.++-..+..|.++...+++++|...+++..++.|++..+
T Consensus 536 ~k~~d~AL~~~~~A~~ld----------------------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v 593 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLD----------------------PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSV 593 (638)
T ss_pred hhhhhHHHHHHHHHHhcC----------------------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence 888888888888888887 5557777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChh
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVP 513 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 513 (590)
++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 594 ~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 594 FALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 888888888888888888888888888876543
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.1e-24 Score=215.09 Aligned_cols=306 Identities=16% Similarity=0.062 Sum_probs=207.8
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHH
Q 007775 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (590)
Q Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 274 (590)
....+..|..+...|++++|+..|++++ ..+|+++.++..++.++ ...|++++|+..+++++.. |.........++
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~ 110 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEML--KVDPETVELHLALGNLF-RRRGEVDRAIRIHQNLLSR-PDLTREQRLLAL 110 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHH-HHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHH
Confidence 3445555666666666666666666666 45565555555555332 3444555666666665552 222211222467
Q ss_pred HHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH--
Q 007775 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL-- 352 (590)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-- 352 (590)
..+|.+|...|+ +++|+..|++++ ...|.+..++..++.++...|++++|+..++++++..|.+..
T Consensus 111 ~~La~~~~~~g~-----------~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (389)
T PRK11788 111 QELGQDYLKAGL-----------LDRAEELFLQLV-DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE 178 (389)
T ss_pred HHHHHHHHHCCC-----------HHHHHHHHHHHH-cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence 777888888888 888888888888 777777788888888888888888888888888877766430
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc
Q 007775 353 --KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (590)
Q Consensus 353 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 430 (590)
..+..++.++...|++++|+..++++++..| ....++..+|.++...|++++|++.+++++..+|
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p----------- 245 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAADP--QCVRASILLGDLALAQGDYAAAIEALERVEEQDP----------- 245 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-----------
Confidence 2455677777788888888888888887776 5666777788888888888888888888777653
Q ss_pred ccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007775 431 FYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA 510 (590)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 510 (590)
.....++..++.+|...|++++|+..+++++...|+... +..++.++...|++++|+..++++++..|+
T Consensus 246 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 246 ----------EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred ----------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 122456677777788888888888888887777776543 377777777888888888888877777777
Q ss_pred ChhhHHHHHHHHHH--cCCCchHHHHHHHHHHHh
Q 007775 511 HVPSLISTAVVLRK--LSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 511 ~~~~~~~l~~~~~~--~g~~~l~~A~~~~~~a~~ 542 (590)
+......++..+.. .|+.. +++..+++.++
T Consensus 315 ~~~~~~l~~~~~~~~~~g~~~--~a~~~~~~~~~ 346 (389)
T PRK11788 315 LRGFHRLLDYHLAEAEEGRAK--ESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHhhhccCCccch--hHHHHHHHHHH
Confidence 66444333333322 34655 66666665553
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.8e-24 Score=192.66 Aligned_cols=337 Identities=15% Similarity=0.112 Sum_probs=283.7
Q ss_pred CCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcch
Q 007775 190 GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (590)
Q Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 269 (590)
....|+-.++..|.++-..|....|+..|..++ ...|-+..+++.+..++ .-+..........|.+. ++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v--~~~P~~W~AWleL~~li--------t~~e~~~~l~~~l~~~~-h~ 227 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVV--NRYPWFWSAWLELSELI--------TDIEILSILVVGLPSDM-HW 227 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHH--hcCCcchHHHHHHHHhh--------chHHHHHHHHhcCcccc-hH
Confidence 344677888999999999999999999999999 78888888888777553 11333333333334322 11
Q ss_pred hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccC
Q 007775 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (590)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 348 (590)
-.-..++.++....+ .++++.-++... .. .|.+...-...|.+...+.++++|+..|+.+.+.+|
T Consensus 228 --M~~~F~~~a~~el~q-----------~~e~~~k~e~l~-~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP 293 (559)
T KOG1155|consen 228 --MKKFFLKKAYQELHQ-----------HEEALQKKERLS-SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP 293 (559)
T ss_pred --HHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 233445556666666 788888888877 55 788888889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccc
Q 007775 349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSD 428 (590)
Q Consensus 349 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 428 (590)
-.. +-.-...++++-..+-.+---+-+.+..++. -.++.-..+|+.|...++.++|+.+|+++++++
T Consensus 294 YRl-~dmdlySN~LYv~~~~skLs~LA~~v~~idK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---------- 360 (559)
T KOG1155|consen 294 YRL-DDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---------- 360 (559)
T ss_pred Ccc-hhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC----------
Confidence 877 6666777777666554444444555566655 456667789999999999999999999999998
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007775 429 KRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID 508 (590)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 508 (590)
|....+|..+|.-|..+++...|++.|++|++++|.+..+|+.+|+.|.-++.+.=|+-+|++++...
T Consensus 361 ------------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 361 ------------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred ------------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 66689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 509 PAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 509 p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
|++...|..||.+|.+.++.+ +|++.|.+++.....+..++..||.+|.++++ .++|..+|++.++..
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~--eAiKCykrai~~~dte~~~l~~LakLye~l~d---~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLE--EAIKCYKRAILLGDTEGSALVRLAKLYEELKD---LNEAAQYYEKYVEVS 496 (559)
T ss_pred CCchHHHHHHHHHHHHhccHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHH
Confidence 999999999999999999988 99999999999988889999999999999999 999999999998843
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=8e-23 Score=211.15 Aligned_cols=485 Identities=11% Similarity=-0.016 Sum_probs=344.6
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007775 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (590)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 89 (590)
+.+.|..++...+.|+++.|+..|++++...+. ..| ++..+..++...|+.++|+..++++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~----~~~---------------av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPL----QSG---------------QVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc----chh---------------hHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 457788899999999999999988888775422 111 1114455677779999999999998
Q ss_pred hccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH
Q 007775 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (590)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 169 (590)
+. |++..... ....|.. +...+++++|+.++ ..++...|.++.++..++.
T Consensus 95 ~~----p~n~~~~~-llalA~l--------------------y~~~gdyd~Aiely-----~kaL~~dP~n~~~l~gLa~ 144 (822)
T PRK14574 95 QS----SMNISSRG-LASAARA--------------------YRNEKRWDQALALW-----QSSLKKDPTNPDLISGMIM 144 (822)
T ss_pred cc----CCCCCHHH-HHHHHHH--------------------HHHcCCHHHHHHHH-----HHHHhhCCCCHHHHHHHHH
Confidence 82 22222211 1112222 44456778888877 3445667888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 007775 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (590)
Q Consensus 170 ~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~ 249 (590)
.+...++.++|.+.++++.+..|..... ..++.++...++..+|+..+++++ ...|++...+........ ..|-..
T Consensus 145 ~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll--~~~P~n~e~~~~~~~~l~-~~~~~~ 220 (822)
T PRK14574 145 TQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV--RLAPTSEEVLKNHLEILQ-RNRIVE 220 (822)
T ss_pred HHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HcCCcH
Confidence 8888899999999999888887774443 555555656777767999999998 678888877766664433 344444
Q ss_pred HHHHHHHHHHHHcCCCC--cchhhHHHHHHHHHHhhchh-hccChHHHHHHHHHHHHHHHHHHHhhCCCCh-------HH
Q 007775 250 EGATFASRALECLGDGC--DQMESTANCLLGISLSAQSK-VAITDFDRATRQAKALQALVSAARSTNMRDL-------SI 319 (590)
Q Consensus 250 ~A~~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~-------~~ 319 (590)
.|.+...+ .|+-- ..... .....+.-..+.+. ...+..++-...+.|+..++..+ ...+.+| .+
T Consensus 221 ~a~~l~~~----~p~~f~~~~~~~-l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~-~~~~~~p~~~~~~~~~ 294 (822)
T PRK14574 221 PALRLAKE----NPNLVSAEHYRQ-LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL-TRWGKDPEAQADYQRA 294 (822)
T ss_pred HHHHHHHh----CccccCHHHHHH-HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH-hhccCCCccchHHHHH
Confidence 55544433 44311 00000 11111111111111 01112344445788888888888 6444333 23
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC----CCCchHHHHHHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG----KWEQGELLRTKA 395 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~~~la 395 (590)
....-.++...|++.+++..|+.+......-+..+....|..|...+++++|+.+|++++...+ .+.+......|.
T Consensus 295 ~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 374 (822)
T PRK14574 295 RIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLY 374 (822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHH
Confidence 3445567788999999999999987655333337888999999999999999999999988653 123344456888
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007775 396 KVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS 475 (590)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 475 (590)
..+...+++++|..+++++.+..|-....++. .....+|+-......++.++...|+..+|++.+++.+...|
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~-------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP 447 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL-------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP 447 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCC-------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999998755421111111 11233466778899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 007775 476 YSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLG 555 (590)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~ 555 (590)
.|+.++..+|.++...|.+.+|...++.+..++|++..+...++.++..++++. +|.....++++..|+++.+. .|.
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~--~A~~~~~~l~~~~Pe~~~~~-~l~ 524 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH--QMELLTDDVISRSPEDIPSQ-ELD 524 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH--HHHHHHHHHHhhCCCchhHH-HHH
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999998554 344
Q ss_pred HHHHHhCC
Q 007775 556 LFYKSQGT 563 (590)
Q Consensus 556 ~~~~~~g~ 563 (590)
........
T Consensus 525 r~~~~h~~ 532 (822)
T PRK14574 525 RQRKVHNM 532 (822)
T ss_pred HHHHHhhh
Confidence 43333333
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=6.4e-23 Score=211.87 Aligned_cols=445 Identities=11% Similarity=-0.092 Sum_probs=332.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHH
Q 007775 70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (590)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 149 (590)
+.+..++|++++|+..|+++++. +|.....+. .++.+ +...|+.++|+..+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~----~P~~~~av~-dll~l--------------------~~~~G~~~~A~~~~ek-- 93 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA----GPLQSGQVD-DWLQI--------------------AGWAGRDQEVIDVYER-- 93 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh----CccchhhHH-HHHHH--------------------HHHcCCcHHHHHHHHH--
Confidence 46889999999999999999988 444321111 22222 2223667788776532
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCC
Q 007775 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (590)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~ 229 (590)
. ....|........++..+...|+++.|++.|++++...|+++.++..++..+...++.++|++.+++++ ..+|.
T Consensus 94 --a-~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~--~~dp~ 168 (822)
T PRK14574 94 --Y-QSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA--ERDPT 168 (822)
T ss_pred --h-ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc--ccCcc
Confidence 2 222222333444447799999999999999999999999999999999999999999999999999999 67777
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHH
Q 007775 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (590)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 309 (590)
.... ..++.+..... ...+|+..++++++..|++. ..+..+...+...|- ...|.+...+--
T Consensus 169 ~~~~-l~layL~~~~~-~~~~AL~~~ekll~~~P~n~-----e~~~~~~~~l~~~~~-----------~~~a~~l~~~~p 230 (822)
T PRK14574 169 VQNY-MTLSYLNRATD-RNYDALQASSEAVRLAPTSE-----EVLKNHLEILQRNRI-----------VEPALRLAKENP 230 (822)
T ss_pred hHHH-HHHHHHHHhcc-hHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCC-----------cHHHHHHHHhCc
Confidence 5554 55665655544 44479999999999999988 466777677777776 556665544322
Q ss_pred HhhCCCChHHHHH--HHHHHHH---------cc---CHHHHHHHHHHHHccc---CCCc---HHHHHHHHHHHHHcCChH
Q 007775 310 RSTNMRDLSILYR--LSLEYAE---------QR---KLNAAHYYAKMLLKLE---GGSN---LKGWLLMARILSAQKRYE 369 (590)
Q Consensus 310 ~~~~p~~~~~~~~--la~~~~~---------~g---~~~~A~~~~~~~l~~~---p~~~---~~~~~~la~~~~~~g~~~ 369 (590)
.........+.. .+.-..+ .+ -.+.|+.-++.++... |... ..+..-...++...|++.
T Consensus 231 -~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 231 -NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred -cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 111111111111 1111111 11 2455777777777633 4321 123344556778889999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHH
Q 007775 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLD 449 (590)
Q Consensus 370 ~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (590)
++++.|+.+...... --..+....|..|...+++++|+.+|++++...+.. ...+.+......
T Consensus 310 ~vi~~y~~l~~~~~~-~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~----------------~~~~~~~~~~~~ 372 (822)
T PRK14574 310 DLIKEYEAMEAEGYK-MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT----------------FRNSDDLLDADD 372 (822)
T ss_pred HHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc----------------cCCCcchHHHHH
Confidence 999999998765521 124567789999999999999999999998765310 001333444578
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISS---------------YSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS 514 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 514 (590)
|...|...+++++|..++++..+..| +-.+....++.++...|++.+|++.+++.+...|.++.+
T Consensus 373 L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l 452 (822)
T PRK14574 373 LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNL 452 (822)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 88999999999999999999988555 114567788999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCCC
Q 007775 515 LISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 515 ~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~ 587 (590)
+..+|.++...|.+. +|+..++.+..++|++..+...+|.++..+|+ +.+|.....++++..|+++..
T Consensus 453 ~~~~A~v~~~Rg~p~--~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e---~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 453 RIALASIYLARDLPR--KAEQELKAVESLAPRSLILERAQAETAMALQE---WHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHhcCCHH--HHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999 99999999999999999999999999999999 999999999999999999753
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2e-24 Score=213.38 Aligned_cols=292 Identities=15% Similarity=0.095 Sum_probs=252.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCC----h
Q 007775 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD----L 317 (590)
Q Consensus 242 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~----~ 317 (590)
....+++++|+..++++++.+|++. .++..+|.++...|+ +++|+..+++++ ...+.. .
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~-----------~~~A~~~~~~~l-~~~~~~~~~~~ 107 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETV-----ELHLALGNLFRRRGE-----------VDRAIRIHQNLL-SRPDLTREQRL 107 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCc-----------HHHHHHHHHHHh-cCCCCCHHHHH
Confidence 3456778899999999999999766 589999999999999 999999999998 643322 2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc---hHHHHHH
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRTK 394 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~l 394 (590)
.++..+|.+|...|++++|+..|+++++.+|.+. .++..++.++...|++++|++.++++++..|.+.. ...+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE-GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH-HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 5688999999999999999999999999999888 89999999999999999999999999998773322 3356688
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS 474 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 474 (590)
|.++...|++++|+..|+++++.. |....++..+|.++...|++++|+..+++++..+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~----------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAAD----------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHC----------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999986 4557889999999999999999999999999988
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 475 SYS-ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 475 p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
|.+ ..++..++.++...|++++|+..++++++..|+.. .+..++.++.+.|+++ +|+..++++++..|+++.....
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~--~A~~~l~~~l~~~P~~~~~~~l 321 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPE--AAQALLREQLRRHPSLRGFHRL 321 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHH--HHHHHHHHHHHhCcCHHHHHHH
Confidence 876 46788999999999999999999999999999875 4589999999999999 9999999999999998765545
Q ss_pred HHHHHHH--hCCCCchHHHHHHHHHHhc
Q 007775 554 LGLFYKS--QGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 554 l~~~~~~--~g~~~~~~~A~~~~~~al~ 579 (590)
++..+.. .|+ ..+|+..+++.++
T Consensus 322 ~~~~~~~~~~g~---~~~a~~~~~~~~~ 346 (389)
T PRK11788 322 LDYHLAEAEEGR---AKESLLLLRDLVG 346 (389)
T ss_pred HHHhhhccCCcc---chhHHHHHHHHHH
Confidence 5444432 457 8888888877664
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=9.9e-24 Score=190.55 Aligned_cols=469 Identities=13% Similarity=0.033 Sum_probs=321.6
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007775 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (590)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 89 (590)
-.++|+++..|+....+.+|...|+.++.- +.+|+.-.- + -.++.+++++..+.+|+.+||-+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivkn--kmf~nag~l------k---------mnigni~~kkr~fskaikfyrma 263 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKN--KMFPNAGIL------K---------MNIGNIHFKKREFSKAIKFYRMA 263 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcc--cccCCCcee------e---------eeecceeeehhhHHHHHHHHHHH
Confidence 357889999999999999999998876542 222221110 0 12457999999999999999999
Q ss_pred hccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH
Q 007775 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (590)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 169 (590)
|..-...+..+...+.. ++.-.|+..|.++.||..+.- ..+..| +...-.+|..
T Consensus 264 ldqvpsink~~rikil~--------------------nigvtfiq~gqy~dainsfdh-----~m~~~p-n~~a~~nl~i 317 (840)
T KOG2003|consen 264 LDQVPSINKDMRIKILN--------------------NIGVTFIQAGQYDDAINSFDH-----CMEEAP-NFIAALNLII 317 (840)
T ss_pred HhhccccchhhHHHHHh--------------------hcCeeEEecccchhhHhhHHH-----HHHhCc-cHHhhhhhhh
Confidence 98722223232222211 233348888999999987632 222323 3344556778
Q ss_pred HHHhcCCHHHHHHHHHHHcCC--CC---------CchH--HHHH-HHHHH---HhCC---ChHHHHHHHHHhhcCCCCCC
Q 007775 170 AFSIAGDLSSLATQIEELLPG--II---------NRKE--RYHI-LALCY---YGAG---EDLVALNLLRTLLSGSEDPK 229 (590)
Q Consensus 170 ~~~~~g~~~~a~~~~e~~~~~--~~---------~~~~--~~~~-la~~~---~~~g---~~~~A~~~~~~~l~~~~~p~ 229 (590)
++..-|+-++..+.|.+.+.. .+ ++++ ..+. +-.-+ +... +-++|+-.--+++.-...|+
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 888899999999999988632 11 1111 1111 11111 1112 23334433334332222333
Q ss_pred ChH--------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhcc
Q 007775 230 CLP--------------------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI 289 (590)
Q Consensus 230 ~~~--------------------~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 289 (590)
... .-...+. -+...++++.|++.++-.-+.+.. ..+.+-.++...++.+|-..
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~-~~lk~~d~~~aieilkv~~~kdnk----~~saaa~nl~~l~flqggk~- 471 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAG-ELLKNGDIEGAIEILKVFEKKDNK----TASAAANNLCALRFLQGGKD- 471 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHH-HHHhccCHHHHHHHHHHHHhccch----hhHHHhhhhHHHHHHhcccc-
Confidence 110 0111121 123455676777666433332221 12235555555565554322
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChH
Q 007775 290 TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (590)
Q Consensus 290 ~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~ 369 (590)
+..|..+-..++ ..+..++.++.+.|.+.+..|++++|.+.|++++..+.... .+++++|..+..+|+.+
T Consensus 472 --------~~~aqqyad~al-n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfniglt~e~~~~ld 541 (840)
T KOG2003|consen 472 --------FADAQQYADIAL-NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFNIGLTAEALGNLD 541 (840)
T ss_pred --------hhHHHHHHHHHh-cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHhcccHHHhcCHH
Confidence 778888888888 88888888888888888888888888888888888777777 88888888888888888
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHH
Q 007775 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLD 449 (590)
Q Consensus 370 ~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (590)
+|+.+|-+.-.+-. +++.++..++.+|..+.+..+|++++.++..+- |.++.++..
T Consensus 542 eald~f~klh~il~--nn~evl~qianiye~led~aqaie~~~q~~sli----------------------p~dp~ilsk 597 (840)
T KOG2003|consen 542 EALDCFLKLHAILL--NNAEVLVQIANIYELLEDPAQAIELLMQANSLI----------------------PNDPAILSK 597 (840)
T ss_pred HHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC----------------------CCCHHHHHH
Confidence 88888888776665 678888888888888888888888888877775 667888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS 529 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 529 (590)
+|.+|-+.|+-.+|.+++-......|-+.++.-.+|..|....-+++|+.+|+++--+.|+...-...++.|+.+.|+|.
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 88888888888888888888888888888888888888888888888888888888888887777777888888888888
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 530 NAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 530 l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
+|...|+..-+..|.+.+.+..|..+.-.+|-
T Consensus 678 --ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 --KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred --HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 88888888888888888888888888777775
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.8e-23 Score=194.44 Aligned_cols=296 Identities=15% Similarity=0.120 Sum_probs=262.0
Q ss_pred CCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchh
Q 007775 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (590)
Q Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 270 (590)
..+++++....+..++..+++.+..++....+ ..+|-+...+..... |+...|+..+-...-.+.++..|+.+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll--e~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a---- 312 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELL--EKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKA---- 312 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH--hhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCC----
Confidence 34678889999999999999999999999999 688877666655553 55566666577777789999999988
Q ss_pred hHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCC
Q 007775 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (590)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 350 (590)
..|+..|..|...|+ +.+|.++|.++. .++|....+|...|..+...|..++|+..|..+-++-|..
T Consensus 313 -~sW~aVg~YYl~i~k-----------~seARry~SKat-~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 313 -LSWFAVGCYYLMIGK-----------YSEARRYFSKAT-TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred -cchhhHHHHHHHhcC-----------cHHHHHHHHHHh-hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 699999999999999 999999999999 9999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc
Q 007775 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (590)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 430 (590)
. .....+|.-|.+.++++-|.+.|.+++.+.| .++-++..+|.+....+.|.+|..+|+.++..-+..
T Consensus 380 h-lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P--~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~--------- 447 (611)
T KOG1173|consen 380 H-LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP--SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV--------- 447 (611)
T ss_pred c-chHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc---------
Confidence 8 8888999999999999999999999999999 899999999999999999999999999999654321
Q ss_pred ccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007775 431 FYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA 510 (590)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 510 (590)
....+.-..++.+||.++.+++++++|+.++++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|+
T Consensus 448 ------~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 448 ------LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred ------cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 11112335679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHH
Q 007775 511 HVPSLISTAVVLRK 524 (590)
Q Consensus 511 ~~~~~~~l~~~~~~ 524 (590)
+..+-..|+.+...
T Consensus 522 n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 522 NIFISELLKLAIED 535 (611)
T ss_pred cHHHHHHHHHHHHh
Confidence 97776666655443
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=4.4e-22 Score=187.73 Aligned_cols=340 Identities=17% Similarity=0.079 Sum_probs=279.6
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHH
Q 007775 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (590)
Q Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 274 (590)
...|..-+..+.+.+-++-|+.+|..++ ...|.....++..+ ..-...|..++-..++++++...|... ..|
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~al--qvfp~k~slWlra~-~~ek~hgt~Esl~Allqkav~~~pkae-----~lw 587 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHAL--QVFPCKKSLWLRAA-MFEKSHGTRESLEALLQKAVEQCPKAE-----ILW 587 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHH--hhccchhHHHHHHH-HHHHhcCcHHHHHHHHHHHHHhCCcch-----hHH
Confidence 4567777778888888888888888888 67777666665555 334556677777888888888888765 477
Q ss_pred HHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHH
Q 007775 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (590)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 354 (590)
...+..+...|+ ...|..++..+. ..+|++.++|+....+.....+++.|..+|.++....|.. ..
T Consensus 588 lM~ake~w~agd-----------v~~ar~il~~af-~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe--Rv 653 (913)
T KOG0495|consen 588 LMYAKEKWKAGD-----------VPAARVILDQAF-EANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE--RV 653 (913)
T ss_pred HHHHHHHHhcCC-----------cHHHHHHHHHHH-HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc--hh
Confidence 777777888888 888888888888 8888888888888888888888888888888888877763 58
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccc
Q 007775 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKG 434 (590)
Q Consensus 355 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 434 (590)
|+.-+.+...+++.++|+++++++++..| +...+|..+|.++.++++.+.|...|...++..
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp--~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c---------------- 715 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFP--DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC---------------- 715 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCC--chHHHHHHHhHHHHHHHHHHHHHHHHHhccccC----------------
Confidence 88888888888888888888888888888 778888888888888888888888888888776
Q ss_pred ccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---
Q 007775 435 SANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH--- 511 (590)
Q Consensus 435 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 511 (590)
|..+..|..++.+-.+.|....|...++++.-.+|+++..|......-.+.|+.+.|.....++++..|++
T Consensus 716 ------P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 716 ------PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred ------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 56678888888888888888888888888888888888888888888888888888888888888776665
Q ss_pred ---------------------------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 007775 512 ---------------------------VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQ 564 (590)
Q Consensus 512 ---------------------------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 564 (590)
+.++...|.++....+++ +|.++|.+++..+|++.++|..+-..+...|.
T Consensus 790 WaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~--kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~- 866 (913)
T KOG0495|consen 790 WAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIE--KAREWFERAVKKDPDNGDAWAWFYKFELRHGT- 866 (913)
T ss_pred HHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHccCCccchHHHHHHHHHHHhCC-
Confidence 556677777777777877 89999999999999988888888888888888
Q ss_pred CchHHHHHHHHHHhccccCCC
Q 007775 565 SSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 565 ~~~~~A~~~~~~al~l~p~~~ 585 (590)
-++-.+.|.++...+|.+.
T Consensus 867 --eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 867 --EEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred --HHHHHHHHHHHhccCCCCC
Confidence 7888888888888888764
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.4e-23 Score=189.49 Aligned_cols=453 Identities=15% Similarity=0.045 Sum_probs=317.4
Q ss_pred HhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 007775 17 AKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNL 96 (590)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 96 (590)
|..+.+..+|..|+..|+++|+.+++...+ +--+.++.++..+.+.|.+++||..|...++.
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~--------------~rikil~nigvtfiq~gqy~dainsfdh~m~~---- 305 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKD--------------MRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---- 305 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchh--------------hHHHHHhhcCeeEEecccchhhHhhHHHHHHh----
Confidence 666777789999999999999988654211 12356778888999999999999999998887
Q ss_pred ChhhHHHH-HHHHHHH---------HhhcCCCCCCCCcccccCCccccCcc-----hHHHHHHHHHHHHHHHhhhcCCch
Q 007775 97 DAETTAKL-QKEFAIF---------LLYCGGETCPPNLRSQMGSSFVPRNN-----IEEAILLLMILLRKVALKRIEWDP 161 (590)
Q Consensus 97 ~~~~~~~~-~~~~a~~---------ll~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~l~~~~~~~~~~~~~~~~ 161 (590)
.|.....+ +..|+.. .+..+.. .|... .-.....+... ..+++.. .+++.+. .+...+.
T Consensus 306 ~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~-ip~~~--dddkyi~~~ddp~~~ll~eai~n--d~lk~~e-k~~ka~a 379 (840)
T KOG2003|consen 306 APNFIAALNLIICAFAIGDAEKMKEAFQKLID-IPGEI--DDDKYIKEKDDPDDNLLNEAIKN--DHLKNME-KENKADA 379 (840)
T ss_pred CccHHhhhhhhhhheecCcHHHHHHHHHHHhc-CCCCC--CcccccCCcCCcchHHHHHHHhh--HHHHHHH-HhhhhhH
Confidence 33322222 1111100 0000000 00000 00000111111 1122210 0000000 0000111
Q ss_pred hHHH---HHHHHHHhcCCHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHH
Q 007775 162 SILD---HLSFAFSIAGDLSSLATQIEELLPG---IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (590)
Q Consensus 162 ~~~~---~l~~~~~~~g~~~~a~~~~e~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~ 235 (590)
+-+. .-.++-...-+|....+++-+.++. .+-..+.-...+-.++++|+++.|+++++-.-+.........+..
T Consensus 380 ek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~n 459 (840)
T KOG2003|consen 380 EKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANN 459 (840)
T ss_pred HHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhh
Confidence 1000 0000001111121111222111111 111223445677889999999999999987763222112222222
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCC
Q 007775 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (590)
Q Consensus 236 ~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~ 315 (590)
+.+..+.+-+.++-+|-.+...++.++.-++ .+..+.|++-+..|+ +++|.+.|++++ ..+..
T Consensus 460 l~~l~flqggk~~~~aqqyad~aln~dryn~-----~a~~nkgn~~f~ngd-----------~dka~~~ykeal-~ndas 522 (840)
T KOG2003|consen 460 LCALRFLQGGKDFADAQQYADIALNIDRYNA-----AALTNKGNIAFANGD-----------LDKAAEFYKEAL-NNDAS 522 (840)
T ss_pred hHHHHHHhcccchhHHHHHHHHHhcccccCH-----HHhhcCCceeeecCc-----------HHHHHHHHHHHH-cCchH
Confidence 2332233445567799999999998877666 688999999999999 999999999999 77777
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHH
Q 007775 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (590)
Q Consensus 316 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la 395 (590)
..++++++|..+..+|+.++|+.+|-+.-.+--++. .++..++.+|....+..+|++++-++...-| .++.++..+|
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~il~nn~-evl~qianiye~led~aqaie~~~q~~slip--~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA-EVLVQIANIYELLEDPAQAIELLMQANSLIP--NDPAILSKLA 599 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--CCHHHHHHHH
Confidence 789999999999999999999999999887777777 9999999999999999999999999999998 8999999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007775 396 KVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS 475 (590)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 475 (590)
.+|-+.|+-.+|.+++-...... |.+.++.-.+|..|....-+++|+.+|+++--+.|
T Consensus 600 dlydqegdksqafq~~ydsyryf----------------------p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYF----------------------PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHhhcccchhhhhhhhhhccccc----------------------CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 99999999999999887666665 67788899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 007775 476 YSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLM 538 (590)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~ 538 (590)
+.......++.|+.+.|+|.+|...|+......|.+.+.+..|..+...+|-.+ +.++-+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d---~key~~ 717 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD---AKEYAD 717 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh---HHHHHH
Confidence 988888999999999999999999999999999999999999999988888665 555443
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-23 Score=193.27 Aligned_cols=270 Identities=19% Similarity=0.139 Sum_probs=178.6
Q ss_pred HHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH
Q 007775 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (590)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 352 (590)
.....+..+...++ +.+..+..+..+ ..+|-++.++.....++.+.|+..+=..+-.+.++..|+.+
T Consensus 246 ll~~~ad~~y~~c~-----------f~~c~kit~~ll-e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a- 312 (611)
T KOG1173|consen 246 LLAEKADRLYYGCR-----------FKECLKITEELL-EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA- 312 (611)
T ss_pred HHHHHHHHHHHcCh-----------HHHHHHHhHHHH-hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC-
Confidence 34444455555556 667777777777 66666665554444466666666666666666666777766
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY 432 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 432 (590)
..|+.+|..|...|++.+|.++|.++..++| ....+|...|..+...|..++|+..|..+-+..|
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~--~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~------------- 377 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDP--TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP------------- 377 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCc--cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-------------
Confidence 6777777777777777777777777777766 5566666777777777777777777777766652
Q ss_pred ccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----C
Q 007775 433 KGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI----D 508 (590)
Q Consensus 433 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~ 508 (590)
........+|.-|.+.++++-|.+.|.+++.+.|.+|-++..+|.+.+..+.|.+|..+|+.++.. .
T Consensus 378 ---------G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 378 ---------GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred ---------CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 223345556666666777777777777777777777777777777777777777777777766621 1
Q ss_pred C---CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 509 P---AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 509 p---~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
+ ...+.+.+||.++.+++.++ +|+..|++++.+.|.++.++..+|.+|..+|+ ++.|++.|.+++.+.|++
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~--eAI~~~q~aL~l~~k~~~~~asig~iy~llgn---ld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYE--EAIDYYQKALLLSPKDASTHASIGYIYHLLGN---LDKAIDHFHKALALKPDN 522 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHH--HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCcc
Confidence 1 12345667777777777766 77777777777777777777777777777777 777777777777777765
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=2.2e-21 Score=183.02 Aligned_cols=373 Identities=15% Similarity=0.056 Sum_probs=328.1
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhC
Q 007775 129 GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA 208 (590)
Q Consensus 129 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~ 208 (590)
...+...+..+.|+..+ ...++..|.+..++...+..--..|..+.....|++++...|.....|...+..+...
T Consensus 523 a~~~~k~~~~~carAVy-----a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVY-----AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHHHHhcchHHHHHHHH-----HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 34455666666666555 3455667889999999998888999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhc
Q 007775 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (590)
Q Consensus 209 g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 288 (590)
|+...|..++.++. ...|++-..++...++.. ....++.|..++.++....|.. ++|+.-+.....++.
T Consensus 598 gdv~~ar~il~~af--~~~pnseeiwlaavKle~-en~e~eraR~llakar~~sgTe------Rv~mKs~~~er~ld~-- 666 (913)
T KOG0495|consen 598 GDVPAARVILDQAF--EANPNSEEIWLAAVKLEF-ENDELERARDLLAKARSISGTE------RVWMKSANLERYLDN-- 666 (913)
T ss_pred CCcHHHHHHHHHHH--HhCCCcHHHHHHHHHHhh-ccccHHHHHHHHHHHhccCCcc------hhhHHHhHHHHHhhh--
Confidence 99999999999999 788888888887777654 4557889999999999877754 488888888888888
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCCh
Q 007775 289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (590)
Q Consensus 289 ~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 368 (590)
.++|++++++++ +..|..+..|..+|.++.+.++.+.|...|...++..|... ..|..++.+-...|..
T Consensus 667 ---------~eeA~rllEe~l-k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-pLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 667 ---------VEEALRLLEEAL-KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-PLWLLLAKLEEKDGQL 735 (913)
T ss_pred ---------HHHHHHHHHHHH-HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-hHHHHHHHHHHHhcch
Confidence 999999999999 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHH
Q 007775 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWL 448 (590)
Q Consensus 369 ~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (590)
-.|..+++++.-.+| .+...|.....+-.+.|..+.|.....++++.. |.+...|.
T Consensus 736 ~rAR~ildrarlkNP--k~~~lwle~Ir~ElR~gn~~~a~~lmakALQec----------------------p~sg~LWa 791 (913)
T KOG0495|consen 736 VRARSILDRARLKNP--KNALLWLESIRMELRAGNKEQAELLMAKALQEC----------------------PSSGLLWA 791 (913)
T ss_pred hhHHHHHHHHHhcCC--CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CccchhHH
Confidence 999999999999999 889999999999999999999999999999998 55577787
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCC
Q 007775 449 DLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQ 528 (590)
Q Consensus 449 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 528 (590)
.-..+.-.-++-..++.. ++....++.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-
T Consensus 792 EaI~le~~~~rkTks~DA----Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDA----LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHhccCcccchHHHHH----HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCH
Confidence 777666666665555544 4455678899999999999999999999999999999999999999999999999988
Q ss_pred chHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 529 SNAVIRSFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 529 ~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
+ +-.+.+.+...-.|.....|.....--
T Consensus 868 e--d~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 868 E--DQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred H--HHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 7 889999999999999998888765443
No 40
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=4.5e-22 Score=173.61 Aligned_cols=373 Identities=17% Similarity=0.083 Sum_probs=275.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHH
Q 007775 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (590)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~ 237 (590)
|.+..-...|+..+...|++..|...|..++..+|++..+++..|.+|+..|+..-|+.-+.+++ ...|+...+.+..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl--elKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL--ELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH--hcCccHHHHHHHh
Confidence 44556666788888888888888888888888888888888888888888888888888888888 6788877777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh
Q 007775 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (590)
Q Consensus 238 a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~ 317 (590)
+.+.+ ..|..++|..-|++++...|++.... ++.+-+..+- ..
T Consensus 113 g~vll-K~Gele~A~~DF~~vl~~~~s~~~~~------------------------------eaqskl~~~~------e~ 155 (504)
T KOG0624|consen 113 GVVLL-KQGELEQAEADFDQVLQHEPSNGLVL------------------------------EAQSKLALIQ------EH 155 (504)
T ss_pred chhhh-hcccHHHHHHHHHHHHhcCCCcchhH------------------------------HHHHHHHhHH------HH
Confidence 75543 55677788888888888877654211 1111111000 11
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~ 397 (590)
..+......+.-.|+...|+......+++.|.+. ..+...+.+|...|+...|+.-++.+-++.. ++.+.++.++.+
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda-~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~ykis~L 232 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA-SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHYKISQL 232 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh-HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHHHHHHH
Confidence 2233444556667888888888888888888887 8888888888888888888888888888877 778888888888
Q ss_pred HHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 398 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
++..|+.+.++...+++++++|++...+.......+ ..-...-+.-....++|.++++..++.++.+|..
T Consensus 233 ~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK----------v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~ 302 (504)
T KOG0624|consen 233 LYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK----------VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE 302 (504)
T ss_pred HHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc
Confidence 888888888888888888888776554432111111 1222233455667889999999999999999885
Q ss_pred HHH----HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 478 ASK----CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 478 ~~~----~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
+.+ ...+..|+...|++.+|++.+.+++.++|+++.++...+.+|.-...|+ .|+..|+++.+.++++..+...
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD--~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD--DAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhcCcccHHHHHH
Confidence 433 4556788889999999999999999999999999999999999999999 9999999999999998877655
Q ss_pred HHHHH------------HHhCC--CCchHHHHHHHHHHh-ccccCC
Q 007775 554 LGLFY------------KSQGT--QSSKLEAAECFEAAA-SLEETA 584 (590)
Q Consensus 554 l~~~~------------~~~g~--~~~~~~A~~~~~~al-~l~p~~ 584 (590)
+-.+- .-+|- ..+..+-.+.|+++. +-.|+|
T Consensus 381 le~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 381 LERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCcc
Confidence 43221 11111 012456666777654 456665
No 41
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.9e-22 Score=184.94 Aligned_cols=426 Identities=14% Similarity=0.078 Sum_probs=270.6
Q ss_pred ccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC
Q 007775 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (590)
Q Consensus 131 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~ 210 (590)
..+..|.++.|+.++.. .+.-.|.+..+|.+-..+|...|+|++|.+.-.+.....|.-+..|..+|..+...|+
T Consensus 11 aa~s~~d~~~ai~~~t~-----ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTE-----AIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred hhcccccHHHHHHHHHH-----HHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 44567888888888743 4455677888898889999999999999988888888889999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCCCcchhhHHHHHHHHHHhhch
Q 007775 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF-----ASRALECLGDGCDQMESTANCLLGISLSAQS 285 (590)
Q Consensus 211 ~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~-----~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 285 (590)
|++|+..|.+.+ ..+|++......++... .-.. .+... +-.-+..+|.....+....+..+-..+....
T Consensus 86 ~~eA~~ay~~GL--~~d~~n~~L~~gl~~a~---~~~~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 86 YEEAILAYSEGL--EKDPSNKQLKTGLAQAY---LEDY-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHHHHHHh--hcCCchHHHHHhHHHhh---hHHH-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 999999999999 78888877776666553 1111 11111 1111222222111111112222221111110
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHH------h-------hCCC----C-----------------hHHHHHHHHHHHHcc
Q 007775 286 KVAITDFDRATRQAKALQALVSAAR------S-------TNMR----D-----------------LSILYRLSLEYAEQR 331 (590)
Q Consensus 286 ~~~~~~~~~~~~~~~A~~~~~~a~~------~-------~~p~----~-----------------~~~~~~la~~~~~~g 331 (590)
........ .....+|.-.+..+-. . ..|. + ......+|....+..
T Consensus 160 ~~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 160 TSLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred Hhhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 00000000 0012222222211000 0 0010 0 123467888889999
Q ss_pred CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-----CchHHHHHHHHHHHHhcCHhH
Q 007775 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-----EQGELLRTKAKVQLVQGQLKG 406 (590)
Q Consensus 332 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~~~~~~~la~~~~~~g~~~~ 406 (590)
++..|++.|..++.++ .+. ..+...+.+|...|.+.+.+.....+++..... .-......+|..|...++++.
T Consensus 239 ~f~~a~q~y~~a~el~-~~i-t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA-TDI-TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHHHHHHHhHh-hhh-HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 9999999999999999 666 788889999999999999999988888776410 002233346678888899999
Q ss_pred HHHHHHHHHHHHhhhhhccccccc---ccc--cccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHH
Q 007775 407 AVETYTHLLAALQVQTKTFSSDKR---FYK--GSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKC 481 (590)
Q Consensus 407 A~~~~~~~l~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 481 (590)
|+.+|++++..... ++....... ..+ ....-..|....--..-|+.++..|+|..|+..|.+++..+|+++..|
T Consensus 317 ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH
Confidence 99999998876421 111110000 000 001111233344444557777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007775 482 HATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQ 561 (590)
Q Consensus 482 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 561 (590)
.+.|.||.+.|.+..|+...+.+++++|++...|..-|.++..+.+|+ +|.+.|+++++.+|.+..+...+..+...+
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd--kAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD--KALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777777777777 777777777777777777777777777664
Q ss_pred CCCCchHHHHHHHHH
Q 007775 562 GTQSSKLEAAECFEA 576 (590)
Q Consensus 562 g~~~~~~~A~~~~~~ 576 (590)
.. .....+..++
T Consensus 474 ~~---~~~~ee~~~r 485 (539)
T KOG0548|consen 474 RG---DETPEETKRR 485 (539)
T ss_pred hc---CCCHHHHHHh
Confidence 33 3444444444
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=6.3e-21 Score=187.10 Aligned_cols=361 Identities=16% Similarity=0.102 Sum_probs=289.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCC
Q 007775 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYP 245 (590)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~ 245 (590)
..+..+...|++++|.+.+.++++..|..+..|+.+|.+|-+.|+.+++...+-.+. ..+|.+...|...+. ...+.
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~lad-ls~~~ 220 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLAD-LSEQL 220 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHH-HHHhc
Confidence 345566777999999999999999999999999999999999999999999999888 689999988888884 46677
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh-----HHH
Q 007775 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-----SIL 320 (590)
Q Consensus 246 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~-----~~~ 320 (590)
|.+++|.-+|.++++..|.+. ......+..|.+.|+ ...|...|.+++ ...|... ...
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~-----~~~~ers~L~~~~G~-----------~~~Am~~f~~l~-~~~p~~d~er~~d~i 283 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNW-----ELIYERSSLYQKTGD-----------LKRAMETFLQLL-QLDPPVDIERIEDLI 283 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHhCh-----------HHHHHHHHHHHH-hhCCchhHHHHHHHH
Confidence 888999999999999999887 577888889999999 999999999999 8887332 233
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcccCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----------------
Q 007775 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQT---------------- 382 (590)
Q Consensus 321 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------- 382 (590)
...+..+...++-+.|++.++.++....+ .. ..+..++.++.....++.|...........
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~-ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEKDEASL-EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccc-cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 45577788888889999999999883322 33 567789999999999999998887766511
Q ss_pred ------CCC----CchHH-HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHH
Q 007775 383 ------GKW----EQGEL-LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLA 451 (590)
Q Consensus 383 ------~~~----~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 451 (590)
+.+ .+..+ ...++.+..+.++..+++..+..--..++ ..++..+..++
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~---------------------~d~~dL~~d~a 421 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWV---------------------SDDVDLYLDLA 421 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCCh---------------------hhhHHHHHHHH
Confidence 100 11222 44445555555555565555443222212 45688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCch
Q 007775 452 FIYINLSQWHDAEICLSKSEAISSYS-ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSN 530 (590)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l 530 (590)
..+...|++.+|+.+|..+....+.. ..+|..+|.||..+|.+++|++.|++++...|++.++...|+.++.++|+.+
T Consensus 422 ~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E- 500 (895)
T KOG2076|consen 422 DALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE- 500 (895)
T ss_pred HHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH-
Confidence 99999999999999999998876654 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC---------CHHHHHHHHHHHHHhCCCCchHHHHHH
Q 007775 531 AVIRSFLMAALRLDGM---------NSSAWYNLGLFYKSQGTQSSKLEAAEC 573 (590)
Q Consensus 531 ~~A~~~~~~a~~~~p~---------~~~~~~~l~~~~~~~g~~~~~~~A~~~ 573 (590)
+|.+.+.....-++. ..........++...|+ .++=+..
T Consensus 501 -kalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk---~E~fi~t 548 (895)
T KOG2076|consen 501 -KALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK---REEFINT 548 (895)
T ss_pred -HHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh---HHHHHHH
Confidence 999998886643322 22455677889999999 8774443
No 43
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.3e-21 Score=178.81 Aligned_cols=363 Identities=15% Similarity=0.118 Sum_probs=263.3
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q 007775 126 SQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY 205 (590)
Q Consensus 126 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~ 205 (590)
++....|...+.+++|+.-. .....-.|.-+..|+.+|.++.-.|+|++|...|.+.+...|.+..+...++..+
T Consensus 40 Snrsaa~a~~~~~~~al~da-----~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 40 SNRSAAYASLGSYEKALKDA-----TKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cchHHHHHHHhhHHHHHHHH-----HHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 44555677788888876543 2233456888999999999999999999999999999999999999999999988
Q ss_pred HhCCChH------------------------HHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH-----
Q 007775 206 YGAGEDL------------------------VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS----- 256 (590)
Q Consensus 206 ~~~g~~~------------------------~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~----- 256 (590)
....... .+.....+.+ ..+|.+...++. ......+...+.
T Consensus 115 ~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~--~~~p~~l~~~l~--------d~r~m~a~~~l~~~~~~ 184 (539)
T KOG0548|consen 115 LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII--QKNPTSLKLYLN--------DPRLMKADGQLKGVDEL 184 (539)
T ss_pred hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh--hcCcHhhhcccc--------cHHHHHHHHHHhcCccc
Confidence 3221110 0111111111 112221111000 000001111100
Q ss_pred ----HHHH-----HcCC----CC-----cc-------hhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHh
Q 007775 257 ----RALE-----CLGD----GC-----DQ-------MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (590)
Q Consensus 257 ----~~l~-----~~~~----~~-----~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 311 (590)
.... ..|. ++ +. ......-.+|.......+ +..|++.|..++ .
T Consensus 185 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~-----------f~~a~q~y~~a~-e 252 (539)
T KOG0548|consen 185 LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD-----------FETAIQHYAKAL-E 252 (539)
T ss_pred cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh-----------HHHHHHHHHHHH-h
Confidence 0000 0010 00 00 012244556666666666 999999999999 9
Q ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC
Q 007775 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETILNAALDQTGKW 385 (590)
Q Consensus 312 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 385 (590)
++ .+...+.+.+.+|+..|.+.+++.....+++...... ..+...+|..+...++++.|+.+|.+++.....+
T Consensus 253 l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~ 331 (539)
T KOG0548|consen 253 LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTP 331 (539)
T ss_pred Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCH
Confidence 99 8888899999999999999999999998887654422 1344456778888899999999999998776432
Q ss_pred Cc------------------------hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccc
Q 007775 386 EQ------------------------GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARS 441 (590)
Q Consensus 386 ~~------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (590)
+. ..-....|..++..|+|..|+..|.+++..+ |
T Consensus 332 ~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~----------------------P 389 (539)
T KOG0548|consen 332 DLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD----------------------P 389 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC----------------------C
Confidence 11 2233456888999999999999999999997 7
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 442 LELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
.++..|.+.|-+|.++|.+..|+...+.+++++|+....|...|.++....+|++|++.|+++++.+|++..+...+..+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHcCCCchHHHHHHHHHH
Q 007775 522 LRKLSDQSNAVIRSFLMAA 540 (590)
Q Consensus 522 ~~~~g~~~l~~A~~~~~~a 540 (590)
...+.... ...+..+++
T Consensus 470 ~~a~~~~~--~~ee~~~r~ 486 (539)
T KOG0548|consen 470 VEAQRGDE--TPEETKRRA 486 (539)
T ss_pred HHHhhcCC--CHHHHHHhh
Confidence 88754444 466666663
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=3e-21 Score=189.29 Aligned_cols=360 Identities=16% Similarity=0.084 Sum_probs=286.9
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHH
Q 007775 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (590)
Q Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 273 (590)
+.......|+.++..|++++|..++.+++ ..+|.++.++..++.+ +.+.|+.+++..+.-.|..++|++. ..
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvI--kqdp~~~~ay~tL~~I-yEqrGd~eK~l~~~llAAHL~p~d~-----e~ 209 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVI--KQDPRNPIAYYTLGEI-YEQRGDIEKALNFWLLAAHLNPKDY-----EL 209 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HhCccchhhHHHHHHH-HHHcccHHHHHHHHHHHHhcCCCCh-----HH
Confidence 35667888999999999999999999999 7999999999999955 6677789999999999999999988 58
Q ss_pred HHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc--
Q 007775 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-- 351 (590)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-- 351 (590)
|..++.....+|. +++|.-+|.+++ +.+|.+....+..+.+|.++|+...|+..|.+++...|...
T Consensus 210 W~~ladls~~~~~-----------i~qA~~cy~rAI-~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e 277 (895)
T KOG2076|consen 210 WKRLADLSEQLGN-----------INQARYCYSRAI-QANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE 277 (895)
T ss_pred HHHHHHHHHhccc-----------HHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH
Confidence 9999999999999 999999999999 99999999999999999999999999999999999999321
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHh-hhhhcccc-
Q 007775 352 --LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ-VQTKTFSS- 427 (590)
Q Consensus 352 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~- 427 (590)
.......+..+...++-+.|++.++.++.........+.+..++.++....+++.|............ +++..+..
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 13344557777888888999999999998543334455677899999999999999888776655210 01111100
Q ss_pred --ccccc--ccccccccchHHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 007775 428 --DKRFY--KGSANHARSLELE-VWLDLAFIYINLSQWHDAEICLSKSEAISSY-SASKCHATGVLYEKKGLYKEAIKAF 501 (590)
Q Consensus 428 --~~~~~--~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 501 (590)
..... --......+.+.. +...++.+..+.++..+++..+..--...|. .++.+..++.++...|++.+|+.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 00000 0011111122233 3556666666666667776655443333343 4788999999999999999999999
Q ss_pred HHHhccCCC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 007775 502 RSALNIDPA-HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAA 578 (590)
Q Consensus 502 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al 578 (590)
..+....+. +..+|+.+|.||..+|.++ +|+.+|++++...|++.++...|+.++..+|+ .++|.+.++...
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e--~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~---~EkalEtL~~~~ 510 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYE--EAIEFYEKVLILAPDNLDARITLASLYQQLGN---HEKALETLEQII 510 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHH--HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC---HHHHHHHHhccc
Confidence 999876653 4679999999999999999 99999999999999999999999999999999 999999998876
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=6.9e-24 Score=198.08 Aligned_cols=265 Identities=20% Similarity=0.129 Sum_probs=124.3
Q ss_pred HHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHH
Q 007775 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (590)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 353 (590)
+.++.++...|+ +++|++.+.+.+... .|+++..|..+|.+....++++.|+..|++++..++.++ .
T Consensus 12 l~~A~~~~~~~~-----------~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-~ 79 (280)
T PF13429_consen 12 LRLARLLYQRGD-----------YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-Q 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 356888999999 999999997665255 588899999999999999999999999999999999988 7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccc
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (590)
.+..++.+ ...+++++|..++.++.+..+ ++..+...+.++...++++++...++++....+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-------------- 141 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDG---DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-------------- 141 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------------
T ss_pred cccccccc-ccccccccccccccccccccc---ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------
Confidence 88888888 799999999999999887664 456677788899999999999999999875421
Q ss_pred cccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChh
Q 007775 434 GSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVP 513 (590)
Q Consensus 434 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 513 (590)
.+.++..|..+|.++.+.|++++|+.+|+++++.+|+++.+...++.++...|+++++...++...+..|+++.
T Consensus 142 ------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 142 ------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp --------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH
Confidence 14668899999999999999999999999999999999999999999999999999999999888888899999
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 514 SLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 514 ~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
.+..+|.++..+|+++ +|+.+|++++..+|+++..+..+|.++...|+ .++|..+++++++.
T Consensus 216 ~~~~la~~~~~lg~~~--~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~---~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYE--EALEYLEKALKLNPDDPLWLLAYADALEQAGR---KDEALRLRRQALRL 277 (280)
T ss_dssp HCHHHHHHHHHHT-HH--HHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHhccccccc--cccccccccccccccccccccccccccccccc---cccccccccccccc
Confidence 9999999999999999 99999999999999999999999999999999 99999999998764
No 46
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.1e-20 Score=165.38 Aligned_cols=288 Identities=15% Similarity=0.142 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 007775 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE 329 (590)
Q Consensus 250 ~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~ 329 (590)
-+..++-.-....|++. .....+|.++...|+ +++|+..|+++. .++|.+....-..|.++..
T Consensus 216 ~~t~l~le~~~~lr~Nv-----hLl~~lak~~~~~Gd-----------n~~a~~~Fe~~~-~~dpy~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 216 SQTFLMLHDNTTLRCNE-----HLMMALGKCLYYNGD-----------YFQAEDIFSSTL-CANPDNVEAMDLYAVLLGQ 278 (564)
T ss_pred hhHHHHHHhhccCCccH-----HHHHHHhhhhhhhcC-----------chHHHHHHHHHh-hCChhhhhhHHHHHHHHHh
Confidence 44445555555566666 477888999999999 899999999999 9999999888888999999
Q ss_pred ccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHH
Q 007775 330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409 (590)
Q Consensus 330 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 409 (590)
.|+++.-..+....+....... .-|+--+.+++..++++.|+.+-+++++.+| .+...+...|.++...|+.++|+-
T Consensus 279 eg~~e~~~~L~~~Lf~~~~~ta-~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVKYTA-SHWFVHAQLLYDEKKFERALNFVEKCIDSEP--RNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred ccCHhhHHHHHHHHHhhhhcch-hhhhhhhhhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhccHHHHhccchHHHHH
Confidence 9999998888888888776666 7788888889999999999999999999998 888999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHH-HHH
Q 007775 410 TYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATG-VLY 488 (590)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~-~~~ 488 (590)
.|+.+..+. |.+.++|..+..+|...|++.+|...-+.++...|.++.++..+| .++
T Consensus 356 aFR~Aq~La----------------------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 356 AFRTAQMLA----------------------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVL 413 (564)
T ss_pred HHHHHHhcc----------------------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceee
Confidence 999999986 667899999999999999999999999999999999999999887 444
Q ss_pred H-HcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCch
Q 007775 489 E-KKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSK 567 (590)
Q Consensus 489 ~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~ 567 (590)
. .-.--++|.+.++++++++|....+...++.++...|.+. +++..+++.+...|++ ..+..||.++...+. +
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~--D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne---~ 487 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK--DIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNE---P 487 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc--hHHHHHHHHHhhcccc-HHHHHHHHHHHHhhh---H
Confidence 3 3334689999999999999999999999999999999999 9999999999999865 678899999999999 9
Q ss_pred HHHHHHHHHHhccccCCC
Q 007775 568 LEAAECFEAAASLEETAP 585 (590)
Q Consensus 568 ~~A~~~~~~al~l~p~~~ 585 (590)
++|.+.|..|+.++|++.
T Consensus 488 Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHHHhcCccch
Confidence 999999999999999874
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=3.1e-21 Score=168.40 Aligned_cols=328 Identities=13% Similarity=0.064 Sum_probs=258.2
Q ss_pred CCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcch
Q 007775 190 GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (590)
Q Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 269 (590)
.+|.+++-.+.+|..++..|++..|+..|..++ ..+|++..+++..+.+++. .|...-|+.-+.+++++.|+..
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAv--e~dp~~Y~aifrRaT~yLA-mGksk~al~Dl~rVlelKpDF~--- 106 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAV--EGDPNNYQAIFRRATVYLA-MGKSKAALQDLSRVLELKPDFM--- 106 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--cCCchhHHHHHHHHHHHhh-hcCCccchhhHHHHHhcCccHH---
Confidence 345677788888888888888888888888888 6888887777777766543 3444577777777777777654
Q ss_pred hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC
Q 007775 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (590)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 349 (590)
-+....|.++.++|. +++|..-|..++ ..+|.+....- |. .+......
T Consensus 107 --~ARiQRg~vllK~Ge-----------le~A~~DF~~vl-~~~~s~~~~~e--------------aq---skl~~~~e- 154 (504)
T KOG0624|consen 107 --AARIQRGVVLLKQGE-----------LEQAEADFDQVL-QHEPSNGLVLE--------------AQ---SKLALIQE- 154 (504)
T ss_pred --HHHHHhchhhhhccc-----------HHHHHHHHHHHH-hcCCCcchhHH--------------HH---HHHHhHHH-
Confidence 366777777777777 777777777777 66665432211 10 01000000
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccc
Q 007775 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (590)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 429 (590)
. ..+......+...|++..|+......+++.| -++..+...+.+|...|++..|+.-++.+-++.
T Consensus 155 -~-~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs----------- 219 (504)
T KOG0624|consen 155 -H-WVLVQQLKSASGSGDCQNAIEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS----------- 219 (504)
T ss_pred -H-HHHHHHHHHHhcCCchhhHHHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----------
Confidence 0 2233344456678999999999999999999 788999999999999999999999999998886
Q ss_pred cccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHcCCHHHH
Q 007775 430 RFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCH------------ATGVLYEKKGLYKEA 497 (590)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~------------~l~~~~~~~g~~~~A 497 (590)
.++.+.++.++.++...|+.+.++...+++++++|+....+- .-+.-..+.++|.++
T Consensus 220 -----------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c 288 (504)
T KOG0624|consen 220 -----------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC 288 (504)
T ss_pred -----------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 556889999999999999999999999999999999744321 113344678899999
Q ss_pred HHHHHHHhccCCCChhh----HHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHH
Q 007775 498 IKAFRSALNIDPAHVPS----LISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAEC 573 (590)
Q Consensus 498 ~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~ 573 (590)
++..++.++.+|..+.+ ...+..|+..-|++. +|+....+++..+|++..++...+.+|..... |++|+..
T Consensus 289 le~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~--eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~---YD~AI~d 363 (504)
T KOG0624|consen 289 LEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG--EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM---YDDAIHD 363 (504)
T ss_pred HHHHHHHHhcCCcccceeeeeeheeeecccccCCHH--HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH---HHHHHHH
Confidence 99999999999986544 445677788888888 99999999999999999999999999999999 9999999
Q ss_pred HHHHhccccCCCC
Q 007775 574 FEAAASLEETAPV 586 (590)
Q Consensus 574 ~~~al~l~p~~~~ 586 (590)
|++|.+.+|++..
T Consensus 364 ye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 364 YEKALELNESNTR 376 (504)
T ss_pred HHHHHhcCcccHH
Confidence 9999999998753
No 48
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.9e-20 Score=179.42 Aligned_cols=347 Identities=16% Similarity=0.065 Sum_probs=277.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHcCCC--CCchHHHHHHHHH-HHhCCChHHHHHHHHHhhcCC--CCCC-ChHH
Q 007775 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGI--INRKERYHILALC-YYGAGEDLVALNLLRTLLSGS--EDPK-CLPA 233 (590)
Q Consensus 160 ~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~--~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~--~~p~-~~~~ 233 (590)
....++.++..|..+|.-..|...+++.++.. |+++..+...+.. .-..|..++++++-.+++... .... .+..
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 45678899999999999999999999998877 7777766665554 456789999999999998411 1111 3344
Q ss_pred HHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHH
Q 007775 234 LLIASKICGEY-----------PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302 (590)
Q Consensus 234 ~~~~a~~~~~~-----------~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~ 302 (590)
++..+ +++.. .....+++..++++++.+|.++ .+.+.++.-|..+++ .+.|.
T Consensus 436 ~l~lG-i~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-----~~if~lalq~A~~R~-----------l~sAl 498 (799)
T KOG4162|consen 436 YLFLG-IAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-----LVIFYLALQYAEQRQ-----------LTSAL 498 (799)
T ss_pred HHHHH-HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHHHHHh-----------HHHHH
Confidence 44444 43321 1123478899999999999998 599999999999999 99999
Q ss_pred HHHHHHHHhh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 007775 303 QALVSAARST-NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (590)
Q Consensus 303 ~~~~~a~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 381 (590)
...++++ .. ...++.+|..++.++...+++.+|+.+.+.++...|+|. ........+-...++.++|+..+...+..
T Consensus 499 ~~~~eaL-~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~-~l~~~~~~i~~~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 499 DYAREAL-ALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH-VLMDGKIHIELTFNDREEALDTCIHKLAL 576 (799)
T ss_pred HHHHHHH-HhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh-hhchhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 9999999 88 556789999999999999999999999999999888865 44444444444445555555444333322
Q ss_pred cC--------------------------------------------------------------CCC-----chHHHHHH
Q 007775 382 TG--------------------------------------------------------------KWE-----QGELLRTK 394 (590)
Q Consensus 382 ~~--------------------------------------------------------------~~~-----~~~~~~~l 394 (590)
-. .++ ....|...
T Consensus 577 we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwlla 656 (799)
T KOG4162|consen 577 WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLA 656 (799)
T ss_pred HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHH
Confidence 10 000 02356677
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS 474 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 474 (590)
+..+...+..++|..++.++-.++ |..+..|+..|..+...|++++|.+.|..++.++
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~----------------------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKID----------------------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcc----------------------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 888888888888888888888776 6668999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHH
Q 007775 475 SYSASKCHATGVLYEKKGLYKEAIK--AFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSS 549 (590)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~ 549 (590)
|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.+.|+.+ +|.++|..++++.+.+|.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~--~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK--QAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH--HHHHHHHHHHhhccCCCc
Confidence 9999999999999999999888888 999999999999999999999999999999 999999999999888764
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=1.5e-20 Score=191.42 Aligned_cols=250 Identities=12% Similarity=0.004 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---------cCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCCh
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 368 (590)
+++|+..|++++ ..+|+++.++..+|.++... +++++|+..++++++++|++. .++..+|.++...|++
T Consensus 277 ~~~A~~~~~~Al-~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCV-NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-QALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCH
Confidence 789999999999 99999999999999887644 348999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHH
Q 007775 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWL 448 (590)
Q Consensus 369 ~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (590)
++|+..|+++++.+| +++.+++.+|.++...|++++|+..++++++.+| .++..+.
T Consensus 355 ~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P----------------------~~~~~~~ 410 (553)
T PRK12370 355 IVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLDP----------------------TRAAAGI 410 (553)
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------------CChhhHH
Confidence 999999999999999 8899999999999999999999999999999984 4455555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCC
Q 007775 449 DLAFIYINLSQWHDAEICLSKSEAIS-SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSD 527 (590)
Q Consensus 449 ~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 527 (590)
.++.++...|++++|+..+++++... |+++..+..+|.++...|++++|...+++.....|....++..++..+...|+
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 66667888999999999999999875 77899999999999999999999999999999999999999999999998884
Q ss_pred CchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 528 QSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 528 ~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
+|...+++.++.....+.-...+..++.-.|+ .+.+..+ +++.+..
T Consensus 491 ----~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 ----RALPTIREFLESEQRIDNNPGLLPLVLVAHGE---AIAEKMW-NKFKNED 536 (553)
T ss_pred ----HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhh---hHHHHHH-HHhhccc
Confidence 57766666655333222223337888888999 8887777 7766543
No 50
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.7e-18 Score=153.02 Aligned_cols=292 Identities=13% Similarity=0.039 Sum_probs=138.8
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007775 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE 260 (590)
Q Consensus 181 ~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~ 260 (590)
..++-+-....|++.+....+|.+++..|++.+|+..|+++. ..+|......-..+.+ +...|..++-.......+.
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~--~~dpy~i~~MD~Ya~L-L~~eg~~e~~~~L~~~Lf~ 294 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL--CANPDNVEAMDLYAVL-LGQEGGCEQDSALMDYLFA 294 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh--hCChhhhhhHHHHHHH-HHhccCHhhHHHHHHHHHh
Confidence 334444445556666666666666666666666666666666 5566555544444422 3333444344444444444
Q ss_pred HcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 007775 261 CLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYA 340 (590)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 340 (590)
...... .-|+.-+...+...+ +..|+.+-++++ ..+|.+..++...|.++...|+.++|+-.|
T Consensus 295 ~~~~ta-----~~wfV~~~~l~~~K~-----------~~rAL~~~eK~I-~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 295 KVKYTA-----SHWFVHAQLLYDEKK-----------FERALNFVEKCI-DSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred hhhcch-----hhhhhhhhhhhhhhh-----------HHHHHHHHHHHh-ccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 332222 233333334444444 445555555555 555555555555555555555555555555
Q ss_pred HHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHH-HHHHH-hcCHhHHHHHHHHHHHHH
Q 007775 341 KMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA-KVQLV-QGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 341 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~~l~~~ 418 (590)
+.+..+.|... +.|..+..+|...|++.+|.-.-+.++...| .++..+..+| .++.- -.--++|.+.+++.+.+.
T Consensus 358 R~Aq~Lap~rL-~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 358 RTAQMLAPYRL-EIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHhcchhhH-HHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 55555555444 4555555555555555555555544444444 3344443333 22211 112234444444444443
Q ss_pred hhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007775 419 QVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAI 498 (590)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 498 (590)
|....+-..++..+...|.+++++.++++.+...|+ ...+..+|.++...+.+++|+
T Consensus 435 ----------------------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 435 ----------------------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred ----------------------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHH
Confidence 333444444444444444444444444444444443 233444444444444444444
Q ss_pred HHHHHHhccCCCChhhHHHH
Q 007775 499 KAFRSALNIDPAHVPSLIST 518 (590)
Q Consensus 499 ~~~~~al~~~p~~~~~~~~l 518 (590)
..|..++.++|++-.+...+
T Consensus 492 ~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 492 EYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHhcCccchHHHHHH
Confidence 44444444444444443333
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.5e-20 Score=163.15 Aligned_cols=239 Identities=16% Similarity=0.111 Sum_probs=222.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~ 399 (590)
...+|.+|.+.|-+.+|.+.++..++..|. + +++..++.+|.+..+...|+..+.+.++..| .+...+..+++++.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~-~-dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-P-DTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCc-h-hHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhhhhHHHHH
Confidence 356999999999999999999999998886 4 7999999999999999999999999999999 88999999999999
Q ss_pred HhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH
Q 007775 400 VQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS 479 (590)
Q Consensus 400 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 479 (590)
.+++.++|.++|+.+++.. |.+.++.-.+|..|+-.++++-|+.+|++.+++.-.+++
T Consensus 302 am~~~~~a~~lYk~vlk~~----------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH----------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC----------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence 9999999999999999997 566788888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC---CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDP---AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGL 556 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~ 556 (590)
.+.++|.|++..+++|-++..|++++.... .-.++|+++|.+....|++. -|...|+-++..+|++.+++++||.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n--lA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN--LAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH--HHHHHHHHHhccCcchHHHHHhHHH
Confidence 999999999999999999999999987643 23689999999999999999 9999999999999999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHhccccCCCCCCC
Q 007775 557 FYKSQGTQSSKLEAAECFEAAASLEETAPVEPF 589 (590)
Q Consensus 557 ~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~~f 589 (590)
+-.+.|+ .++|..++..|-.+.|+-....|
T Consensus 438 L~~r~G~---i~~Arsll~~A~s~~P~m~E~~~ 467 (478)
T KOG1129|consen 438 LAARSGD---ILGARSLLNAAKSVMPDMAEVTT 467 (478)
T ss_pred HHhhcCc---hHHHHHHHHHhhhhCcccccccc
Confidence 9999999 99999999999999998766554
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.88 E-value=7.2e-20 Score=179.68 Aligned_cols=295 Identities=12% Similarity=-0.012 Sum_probs=221.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh-HHHHH
Q 007775 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-SILYR 322 (590)
Q Consensus 244 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~-~~~~~ 322 (590)
..|+++.|.+.+.++.+..|+.. ..+...+.+...+|+ ++.|..++.++. +..|++. .+...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~-----~~~llaA~aa~~~g~-----------~~~A~~~l~~a~-~~~p~~~l~~~~~ 158 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPV-----LNLIKAAEAAQQRGD-----------EARANQHLEEAA-ELAGNDNILVEIA 158 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HhCCcCchHHHHH
Confidence 34556667776666666555433 355566677777777 778888888877 6666664 45555
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-Cch-HHHHHHHHHHHH
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQG-ELLRTKAKVQLV 400 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~-~~~~~la~~~~~ 400 (590)
.+.++...|+++.|...++++.+..|+++ .++..++.++...|++++|.+.+.+..+..... ... ........-...
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHK-EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888888888 888888888888888888888888887764311 111 111112222234
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
.+..+++.+.+.++....|.. .+.++.++..++..+...|++++|.+.++++++..|++...
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~------------------~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRH------------------RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHH------------------HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 445555566777777765321 23568999999999999999999999999999999998753
Q ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHHcCCCchHHHHHHHH--HHHhhcCCCHHHHHHH
Q 007775 481 C--HATGVLYEKKGLYKEAIKAFRSALNIDPAHV--PSLISTAVVLRKLSDQSNAVIRSFLM--AALRLDGMNSSAWYNL 554 (590)
Q Consensus 481 ~--~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~l~~A~~~~~--~a~~~~p~~~~~~~~l 554 (590)
. ..........++.+.+++.++++++..|+++ ..+..+|+++.+.|+++ +|.++|+ .+++..|++.. +..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~--~A~~~le~a~a~~~~p~~~~-~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI--EAADAFKNVAACKEQLDAND-LAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH--HHHHHHHHhHHhhcCCCHHH-HHHH
Confidence 2 2333334456889999999999999999999 88999999999999999 9999999 57778887655 5699
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 555 GLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 555 ~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
|.++.+.|+ .++|.++|++++..
T Consensus 377 a~ll~~~g~---~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 377 ADAFDQAGD---KAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHcCC---HHHHHHHHHHHHHH
Confidence 999999999 99999999998764
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=5.6e-20 Score=187.25 Aligned_cols=262 Identities=11% Similarity=0.001 Sum_probs=216.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH
Q 007775 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (590)
Q Consensus 245 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la 324 (590)
.+..++|+..++++++.+|++. .++..+|.++...+..... ...+.+++|+..+++++ .++|+++.++..+|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a-----~a~~~La~~~~~~~~~g~~--~~~~~~~~A~~~~~~Al-~ldP~~~~a~~~lg 345 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSI-----APYCALAECYLSMAQMGIF--DKQNAMIKAKEHAIKAT-ELDHNNPQALGLLG 345 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccH-----HHHHHHHHHHHHHHHcCCc--ccchHHHHHHHHHHHHH-hcCCCCHHHHHHHH
Confidence 3456799999999999999887 5788888777654431110 11223789999999999 99999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCH
Q 007775 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (590)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~ 404 (590)
.++...|++++|+..|+++++++|++. .++..+|.++...|++++|+..++++++.+| .++..+..++.++...|++
T Consensus 346 ~~~~~~g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P--~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 346 LINTIHSEYIVGSLLFKQANLLSPISA-DIKYYYGWNLFMAGQLEEALQTINECLKLDP--TRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHhccCH
Confidence 999999999999999999999999999 9999999999999999999999999999999 6666666677778889999
Q ss_pred hHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 007775 405 KGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHAT 484 (590)
Q Consensus 405 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 484 (590)
++|+..+++++...+ |.++..+..+|.++...|++++|...+.+.....|.+...+..+
T Consensus 423 eeA~~~~~~~l~~~~---------------------p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 423 DDAIRLGDELRSQHL---------------------QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred HHHHHHHHHHHHhcc---------------------ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 999999999988753 55678899999999999999999999999999999988999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Q 007775 485 GVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 485 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
+..+...|+ +|...+++.++.......-......++.-.|+.+ .+..+ +++.+.
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~-~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAI--AEKMW-NKFKNE 535 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhH--HHHHH-HHhhcc
Confidence 999988884 7777777766543332222334788888888887 66655 666554
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=6.3e-22 Score=184.86 Aligned_cols=231 Identities=17% Similarity=0.164 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH
Q 007775 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (590)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 352 (590)
.|..+|.+....++ +++|+..|++++ ..++.++..+..++.+ ...+++++|+.+++++.+..++ +
T Consensus 46 ~~~~~a~La~~~~~-----------~~~A~~ay~~l~-~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~- 110 (280)
T PF13429_consen 46 YWRLLADLAWSLGD-----------YDEAIEAYEKLL-ASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-P- 110 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc-----------cccccccccccc-cccccccccccccccc-cccccccccccccccccccccc-c-
Confidence 44445555555555 666666666666 6666666666666655 5666666776666666655443 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY 432 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 432 (590)
..+...+.++...++++++...++++....+.+.++.++..+|.++.+.|++++|+..|+++++.+
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------------- 176 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-------------- 176 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------------
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 455556666666677777777666665544323556666677777777777777777777777766
Q ss_pred ccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCh
Q 007775 433 KGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHV 512 (590)
Q Consensus 433 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 512 (590)
|.+..++..++.++...|+++++...++......|.++..+..+|.++...|++++|+.+|+++++.+|+++
T Consensus 177 --------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 177 --------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp --------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred --------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 445666666777777777777766666666666666666667777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 513 PSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 513 ~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
..+..+|.++...|+.+ +|..++.++++
T Consensus 249 ~~~~~~a~~l~~~g~~~--~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKD--EALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-------------------
T ss_pred ccccccccccccccccc--ccccccccccc
Confidence 77777777777777766 77766666554
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=1.2e-18 Score=171.02 Aligned_cols=302 Identities=15% Similarity=0.031 Sum_probs=242.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHH
Q 007775 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (590)
Q Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 276 (590)
.....|......|+++.|.+.+.++. ...|+....++..+... ...|+.+.|..++.++.+..|+... .+...
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~--~~~~~~~~~~llaA~aa-~~~g~~~~A~~~l~~a~~~~p~~~l----~~~~~ 158 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNA--DHAAEPVLNLIKAAEAA-QQRGDEARANQHLEEAAELAGNDNI----LVEIA 158 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHh--hcCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCcCch----HHHHH
Confidence 34667888899999999999999998 55666666666666554 4557888999999999998887651 24455
Q ss_pred HHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHH
Q 007775 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356 (590)
Q Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 356 (590)
.+.++...|+ ++.|...+++.. +..|+++.++..++.++...|++++|.+.+.+..+..+.++ ....
T Consensus 159 ~a~l~l~~~~-----------~~~Al~~l~~l~-~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~ 225 (409)
T TIGR00540 159 RTRILLAQNE-----------LHAARHGVDKLL-EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFA 225 (409)
T ss_pred HHHHHHHCCC-----------HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHH
Confidence 6888889999 999999999999 99999999999999999999999999999999998755544 2221
Q ss_pred ----HHHHHHHHcCChHHHHHHHHHHHhccCCC--CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc
Q 007775 357 ----LMARILSAQKRYEDAETILNAALDQTGKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (590)
Q Consensus 357 ----~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 430 (590)
....-+...+..+++.+.+.++.+..|.. +++.++..++..+...|++++|.+.++++++..|++
T Consensus 226 ~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~--------- 296 (409)
T TIGR00540 226 DLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD--------- 296 (409)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---------
Confidence 22222234445555666787877776621 478899999999999999999999999999987532
Q ss_pred ccccccccccchHHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HH
Q 007775 431 FYKGSANHARSLELEV--WLDLAFIYINLSQWHDAEICLSKSEAISSYSA--SKCHATGVLYEKKGLYKEAIKAFR--SA 504 (590)
Q Consensus 431 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~a 504 (590)
... ...........++.+.+.+.++++++..|+++ .....+|.++.+.|++++|.++|+ .+
T Consensus 297 -------------~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 297 -------------RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred -------------ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 221 12233334456888999999999999999999 889999999999999999999999 68
Q ss_pred hccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Q 007775 505 LNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 505 l~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
++..|+... +..+|.++.+.|+.+ +|.+++++++..
T Consensus 364 ~~~~p~~~~-~~~La~ll~~~g~~~--~A~~~~~~~l~~ 399 (409)
T TIGR00540 364 CKEQLDAND-LAMAADAFDQAGDKA--EAAAMRQDSLGL 399 (409)
T ss_pred hhcCCCHHH-HHHHHHHHHHcCCHH--HHHHHHHHHHHH
Confidence 888887665 569999999999998 999999998753
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=2.6e-20 Score=161.66 Aligned_cols=245 Identities=19% Similarity=0.085 Sum_probs=226.5
Q ss_pred HHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH
Q 007775 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (590)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 352 (590)
.-..+|.||...|- +.+|.+.++.++ +..| .++.+..++.+|.+..+...|+..+.+.++..|.+.
T Consensus 225 Wk~Q~gkCylrLgm-----------~r~AekqlqssL-~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V- 290 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGM-----------PRRAEKQLQSSL-TQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV- 290 (478)
T ss_pred HHHHHHHHHHHhcC-----------hhhhHHHHHHHh-hcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh-
Confidence 45678999999999 999999999999 6654 578999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY 432 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 432 (590)
..+...++++...+++++|.++|+.+++..| .+.++.-.+|.-|+.-++++-|+.+|++.++..
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-------------- 354 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMG-------------- 354 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhc--------------
Confidence 8999999999999999999999999999998 788888888999999999999999999999997
Q ss_pred ccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 433 KGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY---SASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 433 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
..+++.++++|.+++..++++-++..|++++....+ -.++|+++|.+....|++.-|.++|+-++..+|
T Consensus 355 --------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 355 --------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred --------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 455899999999999999999999999999986542 378999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 007775 510 AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLF 557 (590)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~ 557 (590)
++.+++++||.+-.+.|+.+ +|..++..+-...|+-.+..++++.+
T Consensus 427 ~h~ealnNLavL~~r~G~i~--~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDIL--GARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred chHHHHHhHHHHHhhcCchH--HHHHHHHHhhhhCccccccccceeEE
Confidence 99999999999999999998 99999999999999888777776654
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=2e-18 Score=168.49 Aligned_cols=132 Identities=14% Similarity=0.004 Sum_probs=106.3
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAV 520 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 520 (590)
|.++.+...++..+...|+.++|...++++++. |.++......+.+ ..++.+++++..++.++.+|+++..+..+|.
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgr 336 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQ 336 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 556788888888888888888888888888884 4455544444443 4488888888888888888888888888899
Q ss_pred HHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 521 VLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 521 ~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
++...++++ +|.++|+++++..|++. .+..++.++.+.|+ .++|.++|++++.+.
T Consensus 337 l~~~~~~~~--~A~~~le~al~~~P~~~-~~~~La~~~~~~g~---~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 337 LLMKHGEWQ--EASLAFRAALKQRPDAY-DYAWLADALDRLHK---PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHCCCHH--HHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHhhh
Confidence 888888888 89999988888888754 45678888888998 899999999888764
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=173.96 Aligned_cols=257 Identities=16% Similarity=0.168 Sum_probs=200.8
Q ss_pred HHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHH
Q 007775 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (590)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 353 (590)
-+..|..+.+.|. +.+|.-.|+.++ +.+|.+.++|..||.+....++-..|+..++++++++|++. .
T Consensus 288 Pf~eG~~lm~nG~-----------L~~A~LafEAAV-kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl-e 354 (579)
T KOG1125|consen 288 PFKEGCNLMKNGD-----------LSEAALAFEAAV-KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL-E 354 (579)
T ss_pred hHHHHHHHHhcCC-----------chHHHHHHHHHH-hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH-H
Confidence 3456777777787 778888888888 88888888888888888888888888888888888888887 8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHH---------HHHHhcCHhHHHHHHHHHHHHHhhhhhc
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK---------VQLVQGQLKGAVETYTHLLAALQVQTKT 424 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~---------~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 424 (590)
++..||..|...|.-.+|.+++.+-+...|.. .+...+. -......+..-.+.|-.+....|
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y----~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~----- 425 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKY----VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP----- 425 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc----hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----
Confidence 88888888888888888888888877766521 1100000 00000111222333444433331
Q ss_pred ccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007775 425 FSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSA 504 (590)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 504 (590)
...++++...||.+|...|+|++|+.+|+.|+...|++...|+.||..+....+.++|+..|++|
T Consensus 426 ---------------~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 426 ---------------TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred ---------------CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 02678999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC----------CHHHHHHHHHHHHHhCCCCchHHHHH
Q 007775 505 LNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM----------NSSAWYNLGLFYKSQGTQSSKLEAAE 572 (590)
Q Consensus 505 l~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~----------~~~~~~~l~~~~~~~g~~~~~~~A~~ 572 (590)
+++.|..+.++++||..++.+|.|. +|.++|-.++.+.+. +..+|..|-.++...++ .+-+.+
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~yk--EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~---~D~l~~ 563 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYK--EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR---SDLLQE 563 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHH--HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC---chHHHH
Confidence 9999999999999999999999999 999999999987654 12588888888888888 664433
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=1.9e-18 Score=168.69 Aligned_cols=299 Identities=14% Similarity=0.043 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHH
Q 007775 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (590)
Q Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 275 (590)
...+..|......|++++|.+.+.+.. ..++.+...+..+.......|+++.|..++.++.+..|+... ....
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~---~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~----~~~l 157 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNA---DHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQL----PVEI 157 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH----HHHH
Confidence 334667888888999999999888876 233446666666656657788899999999999998887641 1333
Q ss_pred HHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHH
Q 007775 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (590)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 355 (590)
..+..+...|+ +++|+..+++.. +..|+++.++..++.+|...|++++|+..+.++.+..+.++ ...
T Consensus 158 ~~a~l~l~~g~-----------~~~Al~~l~~~~-~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~ 224 (398)
T PRK10747 158 TRVRIQLARNE-----------NHAARHGVDKLL-EVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHR 224 (398)
T ss_pred HHHHHHHHCCC-----------HHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHH
Confidence 45889999999 999999999999 99999999999999999999999999999999998776654 322
Q ss_pred H-HHHHHH---HHcCChHHHHHHHHHHHhccCCCCchH----HHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccc
Q 007775 356 L-LMARIL---SAQKRYEDAETILNAALDQTGKWEQGE----LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (590)
Q Consensus 356 ~-~la~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 427 (590)
. .....+ ..........+.+.+..+..| .... +...++..+...|+.++|...++++++.
T Consensus 225 ~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp--~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---------- 292 (398)
T PRK10747 225 AMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS--RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---------- 292 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC--HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------
Confidence 2 111111 111112233455666666555 3233 5678899999999999999999999985
Q ss_pred cccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007775 428 DKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI 507 (590)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 507 (590)
+.++......+. ...++++++++.+++.++..|+++..+..+|.++...|++++|.+.|+++++.
T Consensus 293 -------------~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 293 -------------QYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred -------------CCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 233443333333 34599999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 508 DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 508 ~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
.|++. .+..++.++.+.|+.+ +|..+|++++.+.
T Consensus 358 ~P~~~-~~~~La~~~~~~g~~~--~A~~~~~~~l~~~ 391 (398)
T PRK10747 358 RPDAY-DYAWLADALDRLHKPE--EAAAMRRDGLMLT 391 (398)
T ss_pred CCCHH-HHHHHHHHHHHcCCHH--HHHHHHHHHHhhh
Confidence 99864 4678999999999998 9999999998754
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=2.4e-20 Score=174.68 Aligned_cols=240 Identities=16% Similarity=0.150 Sum_probs=205.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Q 007775 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (590)
Q Consensus 321 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~ 400 (590)
+..|..+++.|+..+|.-.|+.+++.+|.+. ++|..||.+....++-..|+..++++++++| ++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha-eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP--~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA-EAWQKLGITQAENENEQNAISALRRCLELDP--TNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH-HHHHHhhhHhhhccchHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999 9999999999999999999999999999999 999999999999999
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCH
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS--YSA 478 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~ 478 (590)
.|.-.+|+.++.+.+...|............. ......+.+...+ ..-.+.|-.+....| .++
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~--~~~~~s~~~~~~l-------------~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENED--FENTKSFLDSSHL-------------AHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCcccc--ccCCcCCCCHHHH-------------HHHHHHHHHHHHhCCCCCCh
Confidence 99999999999999988754322111000000 0000011222222 233455556666667 689
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 479 SKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
++...||.+|.-.|+|++|+.+|+.+|...|++...|+.||-.+....+.. +|+..|++|+++.|....++++||..+
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~--EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSE--EAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccH--HHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHhccccC
Q 007775 559 KSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 559 ~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
..+|. |++|.++|-.||.+.+.
T Consensus 509 mNlG~---ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 509 MNLGA---YKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhh---HHHHHHHHHHHHHhhhc
Confidence 99999 99999999999998876
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=4.5e-19 Score=165.49 Aligned_cols=234 Identities=11% Similarity=0.046 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHH
Q 007775 296 TRQAKALQALVSAARSTNMR----DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (590)
Q Consensus 296 ~~~~~A~~~~~~a~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 371 (590)
...+.++..+.+++ ...|. .+..++.+|.++...|++++|+..|+++++.+|+++ .+|..+|.++...|++++|
T Consensus 40 ~~~e~~i~~~~~~l-~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQIL-ASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA-DAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHH-ccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHCCCHHHH
Confidence 34567777777777 54332 245677888888888888888888888888888877 7888888888888888888
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHH--HHHH
Q 007775 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELE--VWLD 449 (590)
Q Consensus 372 ~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 449 (590)
+..|+++++++| ++..++..+|.++...|++++|++.|+++++.+|+ ++. .|.
T Consensus 118 ~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~----------------------~~~~~~~~- 172 (296)
T PRK11189 118 YEAFDSVLELDP--TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN----------------------DPYRALWL- 172 (296)
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------------------CHHHHHHH-
Confidence 888888888777 66777778888888888888888888888877642 231 222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH--HHHHHHH----hccCCCChhhHHHHHHHHH
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEA--IKAFRSA----LNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A--~~~~~~a----l~~~p~~~~~~~~l~~~~~ 523 (590)
.+....+++++|+..+.+.....+.+ .|. .+.+....|+..++ +..+.+. .++.|..+.+|+++|.++.
T Consensus 173 --~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 173 --YLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred --HHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 22345667788888886655443222 221 24444445554332 3222222 2344556677888888888
Q ss_pred HcCCCchHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhCC
Q 007775 524 KLSDQSNAVIRSFLMAALRLDG-MNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~ 563 (590)
+.|+++ +|+.+|+++++.+| +.++..+.+..+....++
T Consensus 248 ~~g~~~--~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 248 SLGDLD--EAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HCCCHH--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 888877 88888888888775 555555555555444333
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=5.1e-19 Score=165.15 Aligned_cols=238 Identities=15% Similarity=0.032 Sum_probs=188.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 007775 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (590)
Q Consensus 246 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~ 325 (590)
...+.++..+.+++...|-++ ...+..++.+|.++...|+ +++|+..|++++ +.+|+++.+++.+|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-~~~a~~~~~~g~~~~~~g~-----------~~~A~~~~~~Al-~l~P~~~~a~~~lg~ 106 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-EERAQLHYERGVLYDSLGL-----------RALARNDFSQAL-ALRPDMADAYNYLGI 106 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-HhhHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HcCCCCHHHHHHHHH
Confidence 455678888888886554333 2334689999999999999 999999999999 999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHh
Q 007775 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (590)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~ 405 (590)
++...|++++|+..|+++++++|++. .++..+|.++...|++++|++.++++++.+| +++.. .....+....++++
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~-~~~~~l~~~~~~~~ 182 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLELDPTYN-YAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYR-ALWLYLAESKLDPK 182 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHH-HHHHHHHHccCCHH
Confidence 99999999999999999999999999 9999999999999999999999999999998 55521 12223445678899
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hcCCCCH
Q 007775 406 GAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSE-------AISSYSA 478 (590)
Q Consensus 406 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-------~~~p~~~ 478 (590)
+|+..|.+.+...+ +..|. .+.++...|+..++ ..++.+. ++.|..+
T Consensus 183 ~A~~~l~~~~~~~~------------------------~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 183 QAKENLKQRYEKLD------------------------KEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLC 236 (296)
T ss_pred HHHHHHHHHHhhCC------------------------ccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH
Confidence 99999988765431 11222 34555566776544 2333333 4556677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CChhhHHHHHHHHHHcC
Q 007775 479 SKCHATGVLYEKKGLYKEAIKAFRSALNIDP-AHVPSLISTAVVLRKLS 526 (590)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 526 (590)
.+|+.+|.++...|++++|+.+|+++++.+| ++++..+.+..+....+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999996 66766666655554433
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=5.9e-19 Score=146.49 Aligned_cols=209 Identities=17% Similarity=0.154 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~ 397 (590)
.+...+|..|+..|++..|...++++++.+|++. .+|..++.+|...|+.+.|.+.|++++.+.| ++.+++++.|..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-LAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHH
Confidence 5678889999999999999999999999999988 9999999999999999999999999999998 888899999999
Q ss_pred HHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 398 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
++.+|++++|...|++++.. |. -+..+.+|.++|.|..+.|+++.|..+|+++++.+|+.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P~-------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-PA-------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-CC-------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 99999999999999998875 21 24446788888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHH
Q 007775 478 ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAW 551 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~ 551 (590)
+.....++..+...|++-.|..++++.....+-..+.+.....+-...|+.+ .+-++=.+..+..|..+..-
T Consensus 173 ~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~--~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 173 PPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA--AAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCCCcHHHH
Confidence 8888888898889999999988888887777777777777777888888887 66666666667788776543
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=2.6e-18 Score=142.66 Aligned_cols=210 Identities=17% Similarity=0.067 Sum_probs=194.0
Q ss_pred hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC
Q 007775 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (590)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 349 (590)
...+...+|..|...|+ +..|...+++++ +.+|++..+|..++.+|...|+.+.|.+.|+++++++|+
T Consensus 34 aa~arlqLal~YL~~gd-----------~~~A~~nlekAL-~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 34 AAKARLQLALGYLQQGD-----------YAQAKKNLEKAL-EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 34588999999999999 999999999999 999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccc
Q 007775 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (590)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 429 (590)
+. +++++.|..++.+|++++|...|++++....-+.....+.++|.|..+.|+++.|.+.|+++++.+
T Consensus 102 ~G-dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d----------- 169 (250)
T COG3063 102 NG-DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD----------- 169 (250)
T ss_pred cc-chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-----------
Confidence 99 999999999999999999999999999875434667889999999999999999999999999998
Q ss_pred cccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 430 RFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
|..+.....++..+...|++..|..++++.....+...+.+.....+-...|+-+.|-++=.+.-...|
T Consensus 170 -----------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 170 -----------PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred -----------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 555788999999999999999999999999998888888888888999999999999888888888888
Q ss_pred CChhh
Q 007775 510 AHVPS 514 (590)
Q Consensus 510 ~~~~~ 514 (590)
...+.
T Consensus 239 ~s~e~ 243 (250)
T COG3063 239 YSEEY 243 (250)
T ss_pred CcHHH
Confidence 76543
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=2e-18 Score=157.87 Aligned_cols=199 Identities=18% Similarity=0.196 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 007775 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (590)
Q Consensus 317 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~ 396 (590)
...+..+|..+...|++++|+..++++++.+|.+. .++..+|.++...|++++|++.++++++..| .+...+..+|.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY-LAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Confidence 35555666666666666666666666666666555 5555666666666666666666666665555 44455555555
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007775 397 VQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY 476 (590)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 476 (590)
++...|++++|+..+++++...+ .+.....+..+|.++...|++++|...+++++..+|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL--------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc--------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 55555555555555555554310 0222334444455555555555555555555555444
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 007775 477 SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAA 540 (590)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a 540 (590)
++..+..+|.++...|++++|+..+++++...|.++..+..++.++...|+.+ +|..+.+.+
T Consensus 168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~ 229 (234)
T TIGR02521 168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA--AAQRYGAQL 229 (234)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH--HHHHHHHHH
Confidence 44444444445444455555544444444444444444444444444444444 444444333
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=3.1e-18 Score=156.67 Aligned_cols=204 Identities=19% Similarity=0.134 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCC
Q 007775 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (590)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 350 (590)
...+..+|.++...|+ +++|+..+++++ ..+|.+..++..+|.++...|++++|+..++++++..|.+
T Consensus 31 ~~~~~~la~~~~~~~~-----------~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGD-----------LEVAKENLDKAL-EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4689999999999999 999999999999 9999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc
Q 007775 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (590)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 430 (590)
. ..+..++.++...|++++|+..+++++...+.+.....+..+|.++...|++++|...+++++..+
T Consensus 99 ~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------ 165 (234)
T TIGR02521 99 G-DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID------------ 165 (234)
T ss_pred H-HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 8 999999999999999999999999999865434567788899999999999999999999999987
Q ss_pred ccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 431 FYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
|.+...+..++.++...|++++|...+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 166 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 166 ----------PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred ----------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 455788999999999999999999999999999888899999999999999999999999887766543
No 67
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.83 E-value=1.9e-18 Score=170.84 Aligned_cols=382 Identities=16% Similarity=0.126 Sum_probs=304.7
Q ss_pred CCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 007775 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (590)
Q Consensus 175 g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 254 (590)
.+...+...|-++++.++.-+..|..+|..|...-+...|.++|+++. ..++.+..+.-..+..+.. ....++|...
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAF--eLDatdaeaaaa~adtyae-~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAF--ELDATDAEAAAASADTYAE-ESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhhhhHHHHHHHhhc-cccHHHHHHH
Confidence 346677888888999999999999999999999999999999999999 7999988888888866554 4456688887
Q ss_pred HHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHH
Q 007775 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLN 334 (590)
Q Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~ 334 (590)
.-.+-+..|.. .....|..+|..|...++ +..|+..|+.++ +.+|.+..+|..+|.+|...|.+.
T Consensus 549 ~l~~~qka~a~---~~k~nW~~rG~yyLea~n-----------~h~aV~~fQsAL-R~dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 549 CLRAAQKAPAF---ACKENWVQRGPYYLEAHN-----------LHGAVCEFQSAL-RTDPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred HHHHhhhchHH---HHHhhhhhccccccCccc-----------hhhHHHHHHHHh-cCCchhHHHHHHHHHHHHhcCcee
Confidence 55555544432 233467779999999999 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC-----CCchHHHHHHHHHHHHhcCHhHHHH
Q 007775 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK-----WEQGELLRTKAKVQLVQGQLKGAVE 409 (590)
Q Consensus 335 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~ 409 (590)
.|++.|.++..++|.+. .+.+..+.+.+..|+|.+|+..+...+..... .+-++.+..++..+...|=..+|..
T Consensus 614 ~AlKvF~kAs~LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd 692 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVD 692 (1238)
T ss_pred hHHHhhhhhHhcCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999998 89999999999999999999999988776531 1335566666666666777777777
Q ss_pred HHHHHHHHHhhh--------hhcccccc--------------------ccccc--------------------ccccccc
Q 007775 410 TYTHLLAALQVQ--------TKTFSSDK--------------------RFYKG--------------------SANHARS 441 (590)
Q Consensus 410 ~~~~~l~~~~~~--------~~~~~~~~--------------------~~~~~--------------------~~~~~~~ 441 (590)
.+++.++..-.. .-.|..+. ....+ ...-...
T Consensus 693 ~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~ 772 (1238)
T KOG1127|consen 693 FFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA 772 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh
Confidence 777776543111 00010000 00000 0000011
Q ss_pred hHHHHHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChh
Q 007775 442 LELEVWLDLAFIYIN--------LSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVP 513 (590)
Q Consensus 442 ~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 513 (590)
.++..|+++|.-|.+ ..+...|+.++.+++++..++...|+.+|.+ ...|++.-|..+|-+.+...|....
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~ 851 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC 851 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh
Confidence 235678999988776 2334579999999999999999999999988 6668999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 514 SLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 514 ~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
.|.++|.++.+..+++ .|...|.++..++|.+...|...+.+....|+ .-++...|....++.
T Consensus 852 ~W~NlgvL~l~n~d~E--~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~---ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFE--HAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR---IIERLILFAHSDELC 914 (1238)
T ss_pred heeccceeEEecccHH--HhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH---HHHHHHHHHhhHHhh
Confidence 9999999999999998 99999999999999999999999999999999 889998888754443
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.83 E-value=5.9e-17 Score=153.79 Aligned_cols=332 Identities=19% Similarity=0.151 Sum_probs=181.3
Q ss_pred HHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhc
Q 007775 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (590)
Q Consensus 205 ~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 284 (590)
.+..++|.+.++..+.++ ...|.+...+-+.+ +.+...|+.++|......++..++... .+|..+|.++...
T Consensus 17 ~yE~kQYkkgLK~~~~iL--~k~~eHgeslAmkG-L~L~~lg~~~ea~~~vr~glr~d~~S~-----vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQIL--KKFPEHGESLAMKG-LTLNCLGKKEEAYELVRLGLRNDLKSH-----VCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHhHHHHHHHHH--HhCCccchhHHhcc-chhhcccchHHHHHHHHHHhccCcccc-----hhHHHHHHHHhhh
Confidence 344555555555555555 34455444444444 223344455555555555555555444 3555555555555
Q ss_pred hhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH
Q 007775 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (590)
Q Consensus 285 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 364 (590)
.+ |++|+++|+.|+ .++|+|..+|..++.+..+.++++-....-.+.++..|... ..|...+..+.-
T Consensus 89 K~-----------Y~eaiKcy~nAl-~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r-a~w~~~Avs~~L 155 (700)
T KOG1156|consen 89 KK-----------YDEAIKCYRNAL-KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR-ASWIGFAVAQHL 155 (700)
T ss_pred hh-----------HHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH-HHHHHHHHHHHH
Confidence 55 555555555555 55555555555555555555555555555555555555555 555555555555
Q ss_pred cCChHHHHHHHHHHHhcc---CCCC---chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccccccc
Q 007775 365 QKRYEDAETILNAALDQT---GKWE---QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANH 438 (590)
Q Consensus 365 ~g~~~~A~~~~~~a~~~~---~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (590)
.|++..|..+++...+.. |... ..........+....|.+++|++.+..--...
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-------------------- 215 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-------------------- 215 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--------------------
Confidence 555555555555444433 1100 11222223333444444444444333221111
Q ss_pred ccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHH--------------
Q 007775 439 ARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAI-KAFRS-------------- 503 (590)
Q Consensus 439 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~-------------- 503 (590)
.+........+.++.+.+++++|...|...+..+|++...+..+-.++..-.+--+++ ..|..
T Consensus 216 --~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 216 --VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred --HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 1112233344455555555555555555555555555444333333322101111111 11111
Q ss_pred -------------------------------------------------------HhccC------------CCC--hhh
Q 007775 504 -------------------------------------------------------ALNID------------PAH--VPS 514 (590)
Q Consensus 504 -------------------------------------------------------al~~~------------p~~--~~~ 514 (590)
.+.-. |.. ...
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 11100 111 234
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 515 LISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 515 ~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
++.++.-+...|+++ .|..+++.|+...|.-++.+...|+++...|. +++|..+++.+.+++-.|
T Consensus 374 ~y~laqh~D~~g~~~--~A~~yId~AIdHTPTliEly~~KaRI~kH~G~---l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYE--VALEYIDLAIDHTPTLIELYLVKARIFKHAGL---LDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHHHHHHHHHcccHH--HHHHHHHHHhccCchHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhccchh
Confidence 567788888999998 99999999999999999999999999999999 999999999999887543
No 69
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.82 E-value=1e-16 Score=158.79 Aligned_cols=456 Identities=12% Similarity=0.019 Sum_probs=312.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcc
Q 007775 58 LQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNN 137 (590)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 137 (590)
+...+.+++..||.+|...-+.-.|..+|+++-+. |+..... .... ...|....+
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaea-aaa~--------------------adtyae~~~ 541 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEA-AAAS--------------------ADTYAEEST 541 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cchhhhh-HHHH--------------------HHHhhcccc
Confidence 33446788999999999988999999999999887 4432111 1111 122566667
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 007775 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNL 217 (590)
Q Consensus 138 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 217 (590)
.++|....+....+... .-...-+...+..|...+++..++..|+.++..+|.|...|..+|.+|...|++..|++.
T Consensus 542 we~a~~I~l~~~qka~a---~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv 618 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPA---FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV 618 (1238)
T ss_pred HHHHHHHHHHHhhhchH---HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh
Confidence 77776654332211110 011223444788899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhcc---ChHHH
Q 007775 218 LRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI---TDFDR 294 (590)
Q Consensus 218 ~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~ 294 (590)
|.++. ..+|.+....+..+ +.....|.+++|+..+...+....... .....++.++.+...... .....
T Consensus 619 F~kAs--~LrP~s~y~~fk~A-~~ecd~GkYkeald~l~~ii~~~s~e~-----~~q~gLaE~~ir~akd~~~~gf~~ka 690 (1238)
T KOG1127|consen 619 FTKAS--LLRPLSKYGRFKEA-VMECDNGKYKEALDALGLIIYAFSLER-----TGQNGLAESVIRDAKDSAITGFQKKA 690 (1238)
T ss_pred hhhhH--hcCcHhHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 99999 79999888877777 334577889999999998887654432 233344444433332110 01122
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHc-----------------------cCH------HHHHHHHHHHH
Q 007775 295 ATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQ-----------------------RKL------NAAHYYAKMLL 344 (590)
Q Consensus 295 ~~~~~~A~~~~~~a~~~~~-p~~~~~~~~la~~~~~~-----------------------g~~------~~A~~~~~~~l 344 (590)
...++++++.|.-++ ... ..+...|..++..+.-. +.. --+.+++-..+
T Consensus 691 vd~~eksie~f~~~l-~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 691 VDFFEKSIESFIVSL-IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred hHHHHHHHHHHHHHH-HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 233455555555444 222 23333343333322111 111 11223333333
Q ss_pred cccCCCcHHHHHHHHHHHHH--------cCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 007775 345 KLEGGSNLKGWLLMARILSA--------QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (590)
Q Consensus 345 ~~~p~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 416 (590)
+.... + ..|+++|..|.+ ..+...|+.++.++++... ++...|+.+|.+ ...|.+.-|...|-+.+.
T Consensus 770 sl~~~-~-~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a--nn~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 770 SLAIH-M-YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA--NNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHhhc-c-chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh--ccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 33222 3 578888887776 2234578999999999987 778889888888 666888889999988888
Q ss_pred HHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 007775 417 ALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKE 496 (590)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 496 (590)
.. |.....|.++|.++....+++.|...|.++..++|.+...|...+.+....|+.-+
T Consensus 845 se----------------------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~ 902 (1238)
T KOG1127|consen 845 SE----------------------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIE 902 (1238)
T ss_pred cc----------------------ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHH
Confidence 76 56688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCC-----ChhhHHHHHHHHHHcCCCc--------hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 497 AIKAFRSALNIDPA-----HVPSLISTAVVLRKLSDQS--------NAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 497 A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~--------l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
+...|......... ....|.+-.......|+++ +..|--.+++.+...|+...++...|.....++.
T Consensus 903 ~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~e 982 (1238)
T KOG1127|consen 903 RLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEE 982 (1238)
T ss_pred HHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHH
Confidence 99988874433211 2334555555666666655 1122333445556688888899999999999998
Q ss_pred CCchHHHHHHHHHHhcc
Q 007775 564 QSSKLEAAECFEAAASL 580 (590)
Q Consensus 564 ~~~~~~A~~~~~~al~l 580 (590)
+.+|.+.+.+.+.+
T Consensus 983 ---y~~a~ela~Rligl 996 (1238)
T KOG1127|consen 983 ---YRAALELATRLIGL 996 (1238)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 88888888877643
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.82 E-value=2.4e-17 Score=159.32 Aligned_cols=247 Identities=21% Similarity=0.192 Sum_probs=207.1
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC-
Q 007775 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG- 383 (590)
Q Consensus 313 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~- 383 (590)
.|.-..+...++..|..+|++++|+..++.+++. .|.-. .....+|.+|..++++.+|+.+|++++.+..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va-~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA-SMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4555677888999999999999999999999987 44433 4555699999999999999999999998741
Q ss_pred -----CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcC
Q 007775 384 -----KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLS 458 (590)
Q Consensus 384 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 458 (590)
++.-+.++.+|+.+|...|++++|..++++++++.... .....|.-...+.+++.++...+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--------------~~~~~~~v~~~l~~~~~~~~~~~ 339 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--------------LGASHPEVAAQLSELAAILQSMN 339 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--------------hccChHHHHHHHHHHHHHHHHhc
Confidence 22456789999999999999999999999999997431 12233566778999999999999
Q ss_pred ChHHHHHHHHHHHhcC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CCChhhHHHHHHHH
Q 007775 459 QWHDAEICLSKSEAIS-----SY---SASKCHATGVLYEKKGLYKEAIKAFRSALNID--------PAHVPSLISTAVVL 522 (590)
Q Consensus 459 ~~~~A~~~~~~a~~~~-----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~ 522 (590)
++++|..++++++++. ++ -+..+.++|.+|..+|++++|.++|++++.+. +.....+..+|..+
T Consensus 340 ~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 9999999999998763 22 26679999999999999999999999999753 33356788999999
Q ss_pred HHcCCCchHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 523 RKLSDQSNAVIRSFLMAALRL-------DGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 523 ~~~g~~~l~~A~~~~~~a~~~-------~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
.+.+++. +|...|.++..+ +|+....+.+|+.+|..+|+ +++|+++.++++.
T Consensus 420 ~~~k~~~--~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~---~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 420 EELKKYE--EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN---YEAAEELEEKVLN 478 (508)
T ss_pred HHhcccc--hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc---HHHHHHHHHHHHH
Confidence 9999999 999999888764 34556778899999999999 9999999999884
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4.8e-14 Score=129.16 Aligned_cols=493 Identities=12% Similarity=0.002 Sum_probs=330.7
Q ss_pred hHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHH
Q 007775 4 HAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETI 83 (590)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 83 (590)
+-.|+.+..+.-=|+=-..++++..|-+.+.++|+...+ ++ +.+...+..-++......|-
T Consensus 67 rrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r--------------~i-----tLWlkYae~Emknk~vNhAR 127 (677)
T KOG1915|consen 67 RRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR--------------NI-----TLWLKYAEFEMKNKQVNHAR 127 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc--------------cc-----hHHHHHHHHHHhhhhHhHHH
Confidence 334555555555455555556666666666666653211 11 12333445666777788888
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhH
Q 007775 84 MSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI 163 (590)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 163 (590)
.++.+++..-.++|..=+..+ .-+- .-|++..|..++..- . ...++...
T Consensus 128 Nv~dRAvt~lPRVdqlWyKY~---ymEE----------------------~LgNi~gaRqiferW-----~-~w~P~eqa 176 (677)
T KOG1915|consen 128 NVWDRAVTILPRVDQLWYKYI---YMEE----------------------MLGNIAGARQIFERW-----M-EWEPDEQA 176 (677)
T ss_pred HHHHHHHHhcchHHHHHHHHH---HHHH----------------------HhcccHHHHHHHHHH-----H-cCCCcHHH
Confidence 888888776222221111111 0000 013344444433211 1 12345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHH-HHh
Q 007775 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK-ICG 242 (590)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~-~~~ 242 (590)
+...+..-.+....+.|...|++-+-.. +++..|...+..-.+.|+..-|..+|..++..-.+ +.....+..+. -.-
T Consensus 177 W~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fE 254 (677)
T KOG1915|consen 177 WLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-DEEAEILFVAFAEFE 254 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHH
Confidence 7777788888888899999999887655 57788999999999999999999999998842222 21122222221 222
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHH
Q 007775 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (590)
Q Consensus 243 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~ 322 (590)
.....++.|..+|+-++...|.+.... .+-..-..--+-|+.. .-......+-.-.|++.+ ..+|.|.++|+.
T Consensus 255 e~qkE~ERar~iykyAld~~pk~raee---L~k~~~~fEKqfGd~~---gIEd~Iv~KRk~qYE~~v-~~np~nYDsWfd 327 (677)
T KOG1915|consen 255 ERQKEYERARFIYKYALDHIPKGRAEE---LYKKYTAFEKQFGDKE---GIEDAIVGKRKFQYEKEV-SKNPYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHHhcchh---hhHHHHhhhhhhHHHHHH-HhCCCCchHHHH
Confidence 344567788888999999888865211 1111111111122210 000011112223467888 889999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcccCCCcH-HHH-----HHHHHHH---HHcCChHHHHHHHHHHHhccCCC--CchHHH
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNL-KGW-----LLMARIL---SAQKRYEDAETILNAALDQTGKW--EQGELL 391 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~-----~~la~~~---~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~ 391 (590)
.-.+-...|+.+.-.+.|++++..-|.... ..| ..+-.++ ....+.+.+.++|+.++++-|+. ..+.+|
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiW 407 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIW 407 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 999999999999999999999988776321 122 2222222 34679999999999999998843 447788
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007775 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSE 471 (590)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 471 (590)
...|....++.+...|.+.+-.++...|. ..++.....+-.+.++++....+|++-+
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AIG~cPK-----------------------~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAIGKCPK-----------------------DKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhccCCc-----------------------hhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999999999999999998753 4566677788889999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChh--hHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHH
Q 007775 472 AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVP--SLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSS 549 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~ 549 (590)
...|.+..+|...|.+-..+|+.+.|...|+-+++...-+.+ .|-.....-...|.++ .|..+|++.++..+...
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e--kaR~LYerlL~rt~h~k- 541 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE--KARALYERLLDRTQHVK- 541 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH--HHHHHHHHHHHhcccch-
Confidence 999999999999999999999999999999999876544433 3444455556677877 99999999999888665
Q ss_pred HHHHHHHHHH-----HhCCC--------CchHHHHHHHHHHhccc
Q 007775 550 AWYNLGLFYK-----SQGTQ--------SSKLEAAECFEAAASLE 581 (590)
Q Consensus 550 ~~~~l~~~~~-----~~g~~--------~~~~~A~~~~~~al~l~ 581 (590)
+|...+..-. ..|.+ .+...|...|++|....
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 8888877665 33300 03778889999887643
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.81 E-value=4.2e-16 Score=148.09 Aligned_cols=401 Identities=15% Similarity=0.036 Sum_probs=292.9
Q ss_pred HHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCC
Q 007775 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (590)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~ 230 (590)
+.++++.|+.++.....|..+...|+-++|.......+..++.....|..+|.++....+|++|+++|+.++ ...|++
T Consensus 31 ~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl--~~~~dN 108 (700)
T KOG1156|consen 31 KQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL--KIEKDN 108 (700)
T ss_pred HHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH--hcCCCc
Confidence 455667899999999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHH
Q 007775 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (590)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 310 (590)
...+.-++.+. .+.++++-....-.+.++..|... ..|...+..+...|. +..|....+...
T Consensus 109 ~qilrDlslLQ-~QmRd~~~~~~tr~~LLql~~~~r-----a~w~~~Avs~~L~g~-----------y~~A~~il~ef~- 170 (700)
T KOG1156|consen 109 LQILRDLSLLQ-IQMRDYEGYLETRNQLLQLRPSQR-----ASWIGFAVAQHLLGE-----------YKMALEILEEFE- 170 (700)
T ss_pred HHHHHHHHHHH-HHHHhhhhHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-
Confidence 99888877443 355667666777778888888766 588888888888888 888888888776
Q ss_pred hhC---CCCh-----HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 007775 311 STN---MRDL-----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (590)
Q Consensus 311 ~~~---p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 382 (590)
+.. |... .+......+..+.|..++|.+.+..--..--+.. ......+.++...+++++|...+...+..+
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl-a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL-AFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-HHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 443 2221 4455566777788888888877665433333333 556677888999999999999999999988
Q ss_pred CCCCchHHHHHHHHHHHHhcCHhHHH-HHHHHHHHHHhhhhhccc--------------------------------ccc
Q 007775 383 GKWEQGELLRTKAKVQLVQGQLKGAV-ETYTHLLAALQVQTKTFS--------------------------------SDK 429 (590)
Q Consensus 383 ~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~~~~~~~~~--------------------------------~~~ 429 (590)
| ++...+..+-.++..-.+--+++ ..|...-+..|....... ...
T Consensus 250 P--dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 250 P--DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred c--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 8 77766666555554222222233 333333222221110000 000
Q ss_pred ccccc---------------------------ccccccchH--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 430 RFYKG---------------------------SANHARSLE--LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 430 ~~~~~---------------------------~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
..++. ......|.. ..+++.++..+-..|+++.|..+++.++...|.-++.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 00000 000011222 3455678888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC-------CHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM-------NSSAWYN 553 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~-------~~~~~~~ 553 (590)
+...|+++...|+.++|..++.++-+++-.+..+-..-|.-..+.++.+ +|.+...+-.+..-+ ..-.|+.
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~--eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE--EAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH--HHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 9999999999999999999999999998776655556777788888888 999887765543321 1124555
Q ss_pred H--HHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 554 L--GLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 554 l--~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
+ |..|.++|+ +-+|++-|..+-.
T Consensus 486 ~E~g~ay~r~~k---~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 486 LEDGEAYLRQNK---LGLALKKFHEIEK 510 (700)
T ss_pred HhhhHHHHHHHH---HHHHHHHHhhHHH
Confidence 4 889999999 9888876665543
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=4.3e-17 Score=141.85 Aligned_cols=259 Identities=16% Similarity=0.100 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc----HHHHHHHHHHHHHcCChHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN----LKGWLLMARILSAQKRYEDAET 373 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~la~~~~~~g~~~~A~~ 373 (590)
.++|++.|..++ +.+|...++...+|.++...|..+.|+.+-+..++. |+-. ..+...+|.-|...|-++.|..
T Consensus 51 ~dKAvdlF~e~l-~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 51 PDKAVDLFLEML-QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cchHHHHHHHHH-hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 679999999999 999999999999999999999999999988776643 4422 1578889999999999999999
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHH
Q 007775 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFI 453 (590)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 453 (590)
+|....+... -...+...+..+|....+|++|++..++..+..+.. ....-+..+..++..
T Consensus 129 ~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-----------------~~~eIAqfyCELAq~ 189 (389)
T COG2956 129 IFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-----------------YRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-----------------chhHHHHHHHHHHHH
Confidence 9999988664 446788899999999999999999999999886432 123346789999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHHcCCCchHH
Q 007775 454 YINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH-VPSLISTAVVLRKLSDQSNAV 532 (590)
Q Consensus 454 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~l~~ 532 (590)
+....+.+.|+..+.++++.+|++..+-..+|.+....|+|+.|++.++.+++.+|+. +.+...|..+|.++|+.+ +
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~--~ 267 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA--E 267 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH--H
Confidence 9999999999999999999999999999999999999999999999999999999987 567889999999999998 9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 533 IRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 533 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
.+.++.++.+..++. .+-..++..-....- .+.|...+.+-+...|+
T Consensus 268 ~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G---~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 268 GLNFLRRAMETNTGA-DAELMLADLIELQEG---IDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHccCCc-cHHHHHHHHHHHhhC---hHHHHHHHHHHHhhCCc
Confidence 999999999988764 445556666665555 68888888888877775
No 74
>PLN02789 farnesyltranstransferase
Probab=99.81 E-value=8.3e-18 Score=155.92 Aligned_cols=227 Identities=12% Similarity=0.104 Sum_probs=197.2
Q ss_pred HHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCH--
Q 007775 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL-- 404 (590)
Q Consensus 328 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~-- 404 (590)
...+..++|+..+.++++++|++. .+|...+.++...| ++++++..++++++.+| .+..+|+..+.++...|+.
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~y-taW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNY-TVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH-HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHHHHHcCchhh
Confidence 345788899999999999999999 99999999999998 68999999999999999 8888999999999888874
Q ss_pred hHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 007775 405 KGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHAT 484 (590)
Q Consensus 405 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 484 (590)
++++..++++++.+ |.+..+|...+.++...|++++|++++.++++.+|.+..+|+.+
T Consensus 125 ~~el~~~~kal~~d----------------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R 182 (320)
T PLN02789 125 NKELEFTRKILSLD----------------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR 182 (320)
T ss_pred HHHHHHHHHHHHhC----------------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH
Confidence 78899999999998 66699999999999999999999999999999999999999999
Q ss_pred HHHHHHc---CCH----HHHHHHHHHHhccCCCChhhHHHHHHHHHH----cCCCchHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 485 GVLYEKK---GLY----KEAIKAFRSALNIDPAHVPSLISTAVVLRK----LSDQSNAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 485 ~~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
+.+.... |.+ ++++.+..+++..+|++..+|..++.++.. .++.. +|...+.+++...|.++.++..
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~--~~~~~~~~~~~~~~~s~~al~~ 260 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP--EVSSVCLEVLSKDSNHVFALSD 260 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch--hHHHHHHHhhcccCCcHHHHHH
Confidence 9998776 333 578889999999999999999999999988 34555 7999999999999999999999
Q ss_pred HHHHHHHhCCCC---------------chHHHHHHHHHHhccc
Q 007775 554 LGLFYKSQGTQS---------------SKLEAAECFEAAASLE 581 (590)
Q Consensus 554 l~~~~~~~g~~~---------------~~~~A~~~~~~al~l~ 581 (590)
|+.+|.....+. ..++|.+.++..-+.+
T Consensus 261 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d 303 (320)
T PLN02789 261 LLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVAD 303 (320)
T ss_pred HHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhC
Confidence 999998643200 1366887777764333
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=3.4e-16 Score=136.29 Aligned_cols=278 Identities=19% Similarity=0.103 Sum_probs=223.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHH
Q 007775 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (590)
Q Consensus 199 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~ 278 (590)
|..|.-++-..+.++|++.|-+++ ..+|......+.++.+ +.+.|..+.|+...+..+. .|+-+...+..+...+|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l--~~d~~t~e~~ltLGnL-fRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEML--QEDPETFEAHLTLGNL-FRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHH--hcCchhhHHHHHHHHH-HHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHH
Confidence 445666777888889999999988 6888888888888855 5566788888888876666 77766556667888999
Q ss_pred HHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc----HHH
Q 007775 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN----LKG 354 (590)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~ 354 (590)
.-|...|- ++.|...|...+ ....--..++-.+..+|....+|++|++..++..+..+... ...
T Consensus 115 ~Dym~aGl-----------~DRAE~~f~~L~-de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf 182 (389)
T COG2956 115 RDYMAAGL-----------LDRAEDIFNQLV-DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF 182 (389)
T ss_pred HHHHHhhh-----------hhHHHHHHHHHh-cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 99999888 999999999888 54445567888999999999999999999999988887642 134
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccc
Q 007775 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKG 434 (590)
Q Consensus 355 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 434 (590)
+..++..+....+.+.|...+.++++.+| ....+-..+|+++...|+|+.|++.++.+++.+|
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~--~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~--------------- 245 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADK--KCVRASIILGRVELAKGDYQKAVEALERVLEQNP--------------- 245 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCc--cceehhhhhhHHHHhccchHHHHHHHHHHHHhCh---------------
Confidence 56677777778899999999999999998 7777888899999999999999999999999885
Q ss_pred ccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh
Q 007775 435 SANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS 514 (590)
Q Consensus 435 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 514 (590)
.--+++...|..+|...|+.++....+.++.+.++. +.+...++..-....-.+.|..++.+-+...|+--..
T Consensus 246 ------~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 246 ------EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred ------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 234678888889999999999999999999888765 4555666666666777788888888888888874433
Q ss_pred HH
Q 007775 515 LI 516 (590)
Q Consensus 515 ~~ 516 (590)
+.
T Consensus 319 ~r 320 (389)
T COG2956 319 HR 320 (389)
T ss_pred HH
Confidence 33
No 76
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.4e-18 Score=152.19 Aligned_cols=269 Identities=19% Similarity=0.078 Sum_probs=234.3
Q ss_pred HHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHH
Q 007775 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (590)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 354 (590)
...|..+..+.+ |.+|+..|..++ ...|++...|...+..++..|++++|....++.+++.|... ..
T Consensus 53 k~~gn~~yk~k~-----------Y~nal~~yt~Ai-~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~-k~ 119 (486)
T KOG0550|consen 53 KEEGNAFYKQKT-----------YGNALKNYTFAI-DMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS-KG 119 (486)
T ss_pred HhhcchHHHHhh-----------HHHHHHHHHHHH-HhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-cc
Confidence 334455666666 999999999999 99999999999999999999999999999999999999988 88
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH------------hccC----CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 007775 355 WLLMARILSAQKRYEDAETILNAAL------------DQTG----KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 355 ~~~la~~~~~~g~~~~A~~~~~~a~------------~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
....+.++...++..+|...++..- .+.| .|....+....+.++...|++++|...--..++++
T Consensus 120 ~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 120 QLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 8899999999888888886665221 0011 01223455677889999999999999999999887
Q ss_pred hhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH------------HHHHHHH
Q 007775 419 QVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS------------KCHATGV 486 (590)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~------------~~~~l~~ 486 (590)
+.+..++...|.++...++.+.|+..|++++.++|+... .+..-|.
T Consensus 200 ----------------------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 200 ----------------------ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred ----------------------cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 666889999999999999999999999999999998733 3667788
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCC----hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 007775 487 LYEKKGLYKEAIKAFRSALNIDPAH----VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQG 562 (590)
Q Consensus 487 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 562 (590)
-.++.|++.+|.+.|..++.++|++ +..|.+.+.+..++|+.. +|+...+.++.++|....++...|.++..++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~--eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR--EAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch--hhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999987 456889999999999998 9999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccccC
Q 007775 563 TQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 563 ~~~~~~~A~~~~~~al~l~p~ 583 (590)
+ |++|.+.|++++++..+
T Consensus 336 ~---~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 K---WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred H---HHHHHHHHHHHHhhccc
Confidence 9 99999999999998766
No 77
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=9.1e-17 Score=149.03 Aligned_cols=231 Identities=12% Similarity=0.034 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCCh--HHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY--EDAETI 374 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~--~~A~~~ 374 (590)
.++|+..+.+++ .++|.+..+|...+.++...| ++++++..+.++++.+|++. .+|...+.++...|+. ++++.+
T Consensus 53 serAL~lt~~aI-~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny-qaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 53 SPRALDLTADVI-RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY-QIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CHHHHHHHHHHH-HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch-HHhHHHHHHHHHcCchhhHHHHHH
Confidence 679999999999 999999999999999999998 68999999999999999999 9999999999998874 788999
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHH
Q 007775 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIY 454 (590)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 454 (590)
++++++.+| .+..+|..++.++...|++++|++.+.++++.+ |.+..+|+..+.++
T Consensus 131 ~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d----------------------~~N~sAW~~R~~vl 186 (320)
T PLN02789 131 TRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED----------------------VRNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC----------------------CCchhHHHHHHHHH
Confidence 999999999 899999999999999999999999999999998 56688999999888
Q ss_pred Hhc---CCh----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 007775 455 INL---SQW----HDAEICLSKSEAISSYSASKCHATGVLYEK----KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 455 ~~~---g~~----~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 523 (590)
... |.+ ++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|+++.++..|+.++.
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 765 333 478888899999999999999999999988 456678999999999999999999999999998
Q ss_pred HcCCC----------------chHHHHHHHHHHHhhcCCCHHHHHHH
Q 007775 524 KLSDQ----------------SNAVIRSFLMAALRLDGMNSSAWYNL 554 (590)
Q Consensus 524 ~~g~~----------------~l~~A~~~~~~a~~~~p~~~~~~~~l 554 (590)
..... ..++|..+++..-+.+|--...|...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~ 313 (320)
T PLN02789 267 EGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWR 313 (320)
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 64311 01268888877766677655666543
No 78
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=8.7e-14 Score=127.53 Aligned_cols=388 Identities=12% Similarity=0.062 Sum_probs=302.8
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHH
Q 007775 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (590)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~ 233 (590)
+...|.....+.....+--..|+...|.+.|++-+.-.| +..+|......-++.++.+.|..+|++.+ -..|+ +..
T Consensus 134 vt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV--~~HP~-v~~ 209 (677)
T KOG1915|consen 134 VTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFV--LVHPK-VSN 209 (677)
T ss_pred HHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHh--eeccc-HHH
Confidence 345588888888888888999999999999999998664 66889999999999999999999999998 45555 556
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhC
Q 007775 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (590)
Q Consensus 234 ~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 313 (590)
++..++.- ...|...-+...|+++++...++. .....+...+..-..+.. ++.|..+|+-++ ..-
T Consensus 210 wikyarFE-~k~g~~~~aR~VyerAie~~~~d~--~~e~lfvaFA~fEe~qkE-----------~ERar~iykyAl-d~~ 274 (677)
T KOG1915|consen 210 WIKYARFE-EKHGNVALARSVYERAIEFLGDDE--EAEILFVAFAEFEERQKE-----------YERARFIYKYAL-DHI 274 (677)
T ss_pred HHHHHHHH-HhcCcHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-Hhc
Confidence 66666553 355688899999999999777633 222344444444444555 899999999999 777
Q ss_pred CCCh--HHHHHHHHHHHHccC---HHHHHH-----HHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 007775 314 MRDL--SILYRLSLEYAEQRK---LNAAHY-----YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 314 p~~~--~~~~~la~~~~~~g~---~~~A~~-----~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 383 (590)
|.+- ..+-.....--+-|+ .++++- -|++.++.+|.+. ++|+.+..+....|+.+.-.+.|++++...|
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY-DsWfdylrL~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY-DSWFDYLRLEESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc-hHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence 7663 333333332233344 333433 4677889999999 9999999999999999999999999999877
Q ss_pred CCCchHHH-------HHHHH-HHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHH
Q 007775 384 KWEQGELL-------RTKAK-VQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYI 455 (590)
Q Consensus 384 ~~~~~~~~-------~~la~-~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 455 (590)
....-..| .+.+. .-....+.+.+.++|+.++++-| ...-..+.+|...|....
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP------------------HkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP------------------HKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC------------------cccchHHHHHHHHHHHHH
Confidence 43222222 22221 12356788999999999999865 333566889999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 007775 456 NLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRS 535 (590)
Q Consensus 456 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~ 535 (590)
++.+...|.+.+-.++...|.+ ..+-....+-.+.++++....+|++-+...|.+..+|...|.+-..+|+.+ .|..
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd--RaRa 492 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD--RARA 492 (677)
T ss_pred HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH--HHHH
Confidence 9999999999999999999975 445555667788899999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhcCCCH--HHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 536 FLMAALRLDGMNS--SAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 536 ~~~~a~~~~p~~~--~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+|+-|+....-+. ..|-.....-...|. ++.|...|++.++..+..+
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E---~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGE---FEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcch---HHHHHHHHHHHHHhcccch
Confidence 9999998654433 345556666677899 9999999999999877654
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.78 E-value=3.8e-16 Score=151.09 Aligned_cols=245 Identities=18% Similarity=0.145 Sum_probs=202.4
Q ss_pred hhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHccCHHHHHHHH
Q 007775 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--------NMRDLSILYRLSLEYAEQRKLNAAHYYA 340 (590)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 340 (590)
....+...++..|..+|+ +++|+..++.++ .. .|.-......+|.+|...+++.+|+.+|
T Consensus 197 ~~~~~~~~La~~y~~~g~-----------~e~A~~l~k~Al-~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly 264 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGR-----------LEKAEPLCKQAL-RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLY 264 (508)
T ss_pred hHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHH-HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344577779999999999 999999999999 65 3333344556999999999999999999
Q ss_pred HHHHcc--------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC------CCchHHHHHHHHHHHHhcCHhH
Q 007775 341 KMLLKL--------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK------WEQGELLRTKAKVQLVQGQLKG 406 (590)
Q Consensus 341 ~~~l~~--------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~la~~~~~~g~~~~ 406 (590)
++++.+ +|.-. .++..|+.+|...|++++|..++++++++..+ +.-...+..++.++..++++++
T Consensus 265 ~~AL~i~e~~~G~~h~~va-~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee 343 (508)
T KOG1840|consen 265 EEALTIREEVFGEDHPAVA-ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE 343 (508)
T ss_pred HHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH
Confidence 999965 23333 78899999999999999999999999987531 2335677889999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------CCCH
Q 007775 407 AVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS--------SYSA 478 (590)
Q Consensus 407 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~ 478 (590)
|..++++++++..+. ....++.-+.++.++|.+|...|++++|.+++++++.+. +...
T Consensus 344 a~~l~q~al~i~~~~--------------~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 344 AKKLLQKALKIYLDA--------------PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHHHHHHhh--------------ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 999999999986421 223335667899999999999999999999999999864 2225
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 479 SKCHATGVLYEKKGLYKEAIKAFRSALNI-------DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
..+..+|..+.+.+++.+|.+.|.++..+ .|+-...+.+|+.+|..+|+++ +|+++.++++.
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e--~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE--AAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH--HHHHHHHHHHH
Confidence 56889999999999999999999988764 3444667899999999999999 99999988875
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.77 E-value=1.7e-14 Score=141.58 Aligned_cols=289 Identities=15% Similarity=0.051 Sum_probs=196.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 007775 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (590)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~ 243 (590)
......++...|+++.|.+.+++..+...+...+.-..|.++...|++++|...|+..+ ..+|++...+..+......
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li--~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI--DRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHhh
Confidence 33445567788888888888888877777888888888888888898888988888888 6888887777666644311
Q ss_pred ----CCCCHHHHHHHHHHHHHHcCCCCcch-------hhHHHHHHHHHHh----hchhhc--------cChHHHHHHHHH
Q 007775 244 ----YPDLAEEGATFASRALECLGDGCDQM-------ESTANCLLGISLS----AQSKVA--------ITDFDRATRQAK 300 (590)
Q Consensus 244 ----~~~~~~~A~~~~~~~l~~~~~~~~~~-------~~~~~~~l~~~~~----~~~~~~--------~~~~~~~~~~~~ 300 (590)
.....+.-..+|++.....|...... .+..+......|. ..|-.+ ..+..+.....+
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 22245566777877777776532110 0011111111111 111100 001122222333
Q ss_pred HHHHHHHHHHhh------------CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcC
Q 007775 301 ALQALVSAARST------------NMRD--LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (590)
Q Consensus 301 A~~~~~~a~~~~------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 366 (590)
-..-|...+ .. .|.. .++++.++..|...|++++|+.+++++|+..|..+ +.+...|.++-+.|
T Consensus 165 l~~~~~~~l-~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~-ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSL-ESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV-ELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhh-cccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHCC
Confidence 333332222 11 1111 25668899999999999999999999999999998 99999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchH-HH
Q 007775 367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLE-LE 445 (590)
Q Consensus 367 ~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 445 (590)
++.+|.+.++.+..+++ .+-.+....+..+.+.|++++|.+.+......+.+ ...+ ..+ --
T Consensus 243 ~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~---------------~~~~-L~~mQc 304 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD---------------PLSN-LNDMQC 304 (517)
T ss_pred CHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC---------------cccC-HHHHHH
Confidence 99999999999999998 77777888899999999999999888766554310 0011 111 12
Q ss_pred HH--HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007775 446 VW--LDLAFIYINLSQWHDAEICLSKSEAIS 474 (590)
Q Consensus 446 ~~--~~la~~~~~~g~~~~A~~~~~~a~~~~ 474 (590)
.| ...|.+|.+.|++..|++.|..+.+..
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34 456899999999999999999888753
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.7e-17 Score=146.90 Aligned_cols=296 Identities=17% Similarity=0.065 Sum_probs=232.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHH
Q 007775 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (590)
Q Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 276 (590)
-....|..++.+.+|.+|+..+..++ ...|++...+...+ .++...+.+++|...+++.+++.|... ..+..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai--~~~pd~a~yy~nRA-a~~m~~~~~~~a~~dar~~~r~kd~~~-----k~~~r 122 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAI--DMCPDNASYYSNRA-ATLMMLGRFEEALGDARQSVRLKDGFS-----KGQLR 122 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHH--HhCccchhhhchhH-HHHHHHHhHhhcccchhhheecCCCcc-----ccccc
Confidence 34556777788888888888888888 67888877777776 556677788888888888888877766 36667
Q ss_pred HHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccc---CCCcHH
Q 007775 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---GGSNLK 353 (590)
Q Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~ 353 (590)
.+.++...+. ..+|...++..- ++ ....|+..+++.+..+ |.-. .
T Consensus 123 ~~~c~~a~~~-----------~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~-~ 170 (486)
T KOG0550|consen 123 EGQCHLALSD-----------LIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACF-K 170 (486)
T ss_pred hhhhhhhhHH-----------HHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhh-H
Confidence 7777766666 555555544211 11 2233444444444333 2223 4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccc
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (590)
+-..-+.++...|++++|...--..+++++ .+.+.++..|.++...++.+.|+..|++++.++|++.+.-..
T Consensus 171 a~~lka~cl~~~~~~~~a~~ea~~ilkld~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~------ 242 (486)
T KOG0550|consen 171 AKLLKAECLAFLGDYDEAQSEAIDILKLDA--TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA------ 242 (486)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHhccc--chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH------
Confidence 556678888889999999999888888888 788888889999999999999999999999998876543221
Q ss_pred cccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 434 GSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS----ASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 434 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
...|.....|..-|+-..+.|++..|.++|..++.++|.+ ...|.+++.+..+.|+..+|+...+.+++++|
T Consensus 243 ----~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 243 ----SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred ----hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 1125667889999999999999999999999999999987 45588999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC
Q 007775 510 AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~ 546 (590)
....++...|.++..+++++ +|.+.|+++++...+
T Consensus 319 syikall~ra~c~l~le~~e--~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWE--EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccc
Confidence 99999999999999999999 999999999997665
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.4e-14 Score=133.90 Aligned_cols=141 Identities=13% Similarity=0.007 Sum_probs=94.2
Q ss_pred ccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHhccCC
Q 007775 439 ARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS-ASKCHATGVLYEKKGLYKEAIKAFR--------SALNIDP 509 (590)
Q Consensus 439 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~p 509 (590)
..|.....-........+...+..|..++....+..|.+ ..+...++.+...+|+++.|++.+. ...+..
T Consensus 336 ~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~- 414 (652)
T KOG2376|consen 336 MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK- 414 (652)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-
Confidence 334433333333444444447888888888888888887 6778888999999999999999998 333222
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 510 AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR-------LDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 510 ~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~-------~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
..+.+...+-.++.+.++.+ -|...+..++. -.+..-..|...+..-.+.|+ -++|...+++.++.+|
T Consensus 415 ~~P~~V~aiv~l~~~~~~~~--~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~---~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 415 HLPGTVGAIVALYYKIKDND--SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN---EEEASSLLEELVKFNP 489 (652)
T ss_pred cChhHHHHHHHHHHhccCCc--cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc---hHHHHHHHHHHHHhCC
Confidence 22444455556666666666 45555555543 222233455566777777899 9999999999999888
Q ss_pred CCC
Q 007775 583 TAP 585 (590)
Q Consensus 583 ~~~ 585 (590)
++.
T Consensus 490 ~d~ 492 (652)
T KOG2376|consen 490 NDT 492 (652)
T ss_pred chH
Confidence 764
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=1.4e-14 Score=141.24 Aligned_cols=313 Identities=17% Similarity=0.069 Sum_probs=160.6
Q ss_pred CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHH
Q 007775 227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (590)
Q Consensus 227 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 306 (590)
+|+.+..+..++.++ ...+..+++...+.++....|.+... .......+..+...|+ +++|...++
T Consensus 2 dp~~~~a~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~a~~~~~~g~-----------~~~A~~~~~ 67 (355)
T cd05804 2 DPDFALGHAAAALLL-LLGGERPAAAAKAAAAAQALAARATE--RERAHVEALSAWIAGD-----------LPKALALLE 67 (355)
T ss_pred CCccHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHcCC-----------HHHHHHHHH
Confidence 455555555555332 22334445555555555555543321 1234445555556666 666666666
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHccC----HHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 007775 307 SAARSTNMRDLSILYRLSLEYAEQRK----LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (590)
Q Consensus 307 ~a~~~~~p~~~~~~~~la~~~~~~g~----~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 382 (590)
+++ ...|.+..++.. +..+...|+ ...+...+.......|... ..+..++.++...|++++|+..++++++..
T Consensus 68 ~~l-~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 144 (355)
T cd05804 68 QLL-DDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW-YLLGMLAFGLEEAGQYDRAEEAARRALELN 144 (355)
T ss_pred HHH-HHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666 666666555443 333333332 2333333332223344444 455556666666666666666666666666
Q ss_pred CCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHH
Q 007775 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHD 462 (590)
Q Consensus 383 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 462 (590)
| ++..++..+|.++...|++++|+..+++++...|.. .......|..++.++...|++++
T Consensus 145 p--~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~------------------~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 145 P--DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS------------------SMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred C--CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC------------------cchhHHHHHHHHHHHHHCCCHHH
Confidence 6 555666666666666666666666666666654310 01112345566666666777777
Q ss_pred HHHHHHHHHhcCCCC--HHHHH---HHHHHHHHcCCHHHHHHH--H-HHHhccCCC--ChhhHHHHHHHHHHcCCCchHH
Q 007775 463 AEICLSKSEAISSYS--ASKCH---ATGVLYEKKGLYKEAIKA--F-RSALNIDPA--HVPSLISTAVVLRKLSDQSNAV 532 (590)
Q Consensus 463 A~~~~~~a~~~~p~~--~~~~~---~l~~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~l~~~~~~~g~~~l~~ 532 (590)
|+..|++++...|.. ..... .+...+...|....+..+ . .......|. ........+.++...|+.+ +
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~ 282 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD--A 282 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH--H
Confidence 777776665544421 11110 111222223322222221 1 111111111 1122234666666777766 7
Q ss_pred HHHHHHHHHhhcCC---------CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 533 IRSFLMAALRLDGM---------NSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 533 A~~~~~~a~~~~p~---------~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
|...++.+...... ........+.++...|+ +++|.+.+..++.+-
T Consensus 283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~---~~~A~~~L~~al~~a 337 (355)
T cd05804 283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN---YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 77776665442211 23445566788888888 888888888887654
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=7.6e-14 Score=123.23 Aligned_cols=409 Identities=14% Similarity=0.047 Sum_probs=257.7
Q ss_pred cccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCh
Q 007775 132 FVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGED 211 (590)
Q Consensus 132 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~ 211 (590)
|..+..++.|+.++.... -+++ .+...+-..++.++...|+|++|...++-+......+.+.|..+|.|++-.|.|
T Consensus 32 fls~rDytGAislLefk~---~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKL---NLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHhcccchhHHHHHHHhh---ccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 455566777877764322 1122 112334556889999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccCh
Q 007775 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (590)
Q Consensus 212 ~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (590)
.+|..+-.++- ..|-....++.++ ...++.++ +..+.+-+.-.. .-...++.++.....
T Consensus 108 ~eA~~~~~ka~---k~pL~~RLlfhla----hklndEk~-~~~fh~~LqD~~--------EdqLSLAsvhYmR~H----- 166 (557)
T KOG3785|consen 108 IEAKSIAEKAP---KTPLCIRLLFHLA----HKLNDEKR-ILTFHSSLQDTL--------EDQLSLASVHYMRMH----- 166 (557)
T ss_pred HHHHHHHhhCC---CChHHHHHHHHHH----HHhCcHHH-HHHHHHHHhhhH--------HHHHhHHHHHHHHHH-----
Confidence 99998887776 3444333333333 13445533 344444443111 244556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHH
Q 007775 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (590)
Q Consensus 292 ~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 371 (590)
+.+|++.|.+++ .-+|.....-..++.+|.+..-++-+.+++.-.+...|+++ .+....+..+++.=+-..|
T Consensus 167 ------YQeAIdvYkrvL-~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt-iA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 167 ------YQEAIDVYKRVL-QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST-IAKNLKACNLFRLINGRTA 238 (557)
T ss_pred ------HHHHHHHHHHHH-hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH-HHHHHHHHHHhhhhccchh
Confidence 999999999999 77777767778899999999999999999999999999998 8887777777664222222
Q ss_pred HHHHHHHHhcc----------------------------CCC--CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhh
Q 007775 372 ETILNAALDQT----------------------------GKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (590)
Q Consensus 372 ~~~~~~a~~~~----------------------------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 421 (590)
..-.....+.. |.. .-+++..+++..|.++++..+|+...+. .+|..
T Consensus 239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~Ptt 315 (557)
T KOG3785|consen 239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTT 315 (557)
T ss_pred HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCC
Confidence 22222211111 100 1256677888888999999999877663 33322
Q ss_pred hhccccccccc----------------cc-----ccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 422 TKTFSSDKRFY----------------KG-----SANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 422 ~~~~~~~~~~~----------------~~-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
+..+....... ++ ......-+...-...++.+++-..++++.+.++...-...-++...
T Consensus 316 P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F 395 (557)
T KOG3785|consen 316 PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF 395 (557)
T ss_pred hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 22111100000 00 0000001112223345555555666666666666665556666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccC-CCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH-HHHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNID-PAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS-SAWYNLGLFY 558 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~-~~~~~l~~~~ 558 (590)
.++++.++...|++.+|.+.|-+.-... .+.......++.+|...+..+ -|-..+-+. ..|.+. ..+..++..+
T Consensus 396 n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~--lAW~~~lk~--~t~~e~fsLLqlIAn~C 471 (557)
T KOG3785|consen 396 NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ--LAWDMMLKT--NTPSERFSLLQLIANDC 471 (557)
T ss_pred hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch--HHHHHHHhc--CCchhHHHHHHHHHHHH
Confidence 7777777777788888877776654433 233444556777777777777 666554321 122222 2334457777
Q ss_pred HHhCCCCchHHHHHHHHHHhccccC
Q 007775 559 KSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 559 ~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
++.+. +--|.+.|...-.++|+
T Consensus 472 Yk~~e---FyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 472 YKANE---FYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHH---HHHHHHhhhHHHccCCC
Confidence 77777 77777778777777775
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=8.5e-14 Score=135.70 Aligned_cols=317 Identities=12% Similarity=-0.009 Sum_probs=190.8
Q ss_pred CCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCC-CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcch
Q 007775 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE-DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (590)
Q Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 269 (590)
+|+.+..+..+|..+...|+.+.|...+.+...... +++........+ +.....|++++|...++++++..|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a-~~~~~~g~~~~A~~~~~~~l~~~P~~~--- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEA-LSAWIAGDLPKALALLEQLLDDYPRDL--- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHCCCcH---
Confidence 466677777777777777777777777766662111 112233334444 333455667778888888777777655
Q ss_pred hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC
Q 007775 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (590)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 349 (590)
.++.. +..+...|... +....+...+.... ...|.....+..+|.++...|++++|+..++++++..|+
T Consensus 78 --~a~~~-~~~~~~~~~~~-------~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~ 146 (355)
T cd05804 78 --LALKL-HLGAFGLGDFS-------GMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD 146 (355)
T ss_pred --HHHHH-hHHHHHhcccc-------cCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 23332 33333333200 00333444444333 445666667777788888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc--hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccc
Q 007775 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ--GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (590)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 427 (590)
+. .++..++.++...|++++|+.++++++...|.... ...+..++.++...|++++|+..|++++...|..
T Consensus 147 ~~-~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~------ 219 (355)
T cd05804 147 DA-WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES------ 219 (355)
T ss_pred Cc-HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC------
Confidence 87 78888888888888888888888888877652111 2345578888888888888888888876543200
Q ss_pred cccccccccccccchHHHH--HHHHHHHHHhcCChHHHHHH--H-HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 007775 428 DKRFYKGSANHARSLELEV--WLDLAFIYINLSQWHDAEIC--L-SKSEAISSY--SASKCHATGVLYEKKGLYKEAIKA 500 (590)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~--~-~~a~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~ 500 (590)
+..... ...+...+...|....+..+ + .......|. ........+.++...|+.++|...
T Consensus 220 -------------~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 220 -------------DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred -------------ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 000111 10222233334433333222 1 111111111 122233577777888888888888
Q ss_pred HHHHhccCCC---------ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 501 FRSALNIDPA---------HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 501 ~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
++........ ........+.++...|+++ +|...+..++...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~--~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA--TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH
Confidence 8776542211 2456677888888889888 8888888887643
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68 E-value=5e-15 Score=134.81 Aligned_cols=190 Identities=10% Similarity=-0.085 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 431 (590)
..++.+|..+...|++++|+..+++++...|.. ....+++.+|.++...|++++|+..|+++++..|++
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---------- 103 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH---------- 103 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----------
Confidence 666777777777777777777777777766621 112456667777777777777777777777766432
Q ss_pred cccccccccchHHHHHHHHHHHHHhc--------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 432 YKGSANHARSLELEVWLDLAFIYINL--------SQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
+....+++.+|.++... |++++|++.|++++..+|++...+..+..+....+ ..
T Consensus 104 ---------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~----- 165 (235)
T TIGR03302 104 ---------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RL----- 165 (235)
T ss_pred ---------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HH-----
Confidence 33344666667666654 56667777777777777666544432222211100 00
Q ss_pred HhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 504 ALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN---SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 504 al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
......+|.++...|++. +|+..+++++...|+. +.+++.+|.++...|+ +++|..+++.....
T Consensus 166 --------~~~~~~~a~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~---~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 --------AGKELYVARFYLKRGAYV--AAINRFETVVENYPDTPATEEALARLVEAYLKLGL---KDLAQDAAAVLGAN 232 (235)
T ss_pred --------HHHHHHHHHHHHHcCChH--HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhh
Confidence 112357888999999999 9999999999987764 5799999999999999 99999998888766
Q ss_pred ccC
Q 007775 581 EET 583 (590)
Q Consensus 581 ~p~ 583 (590)
.|+
T Consensus 233 ~~~ 235 (235)
T TIGR03302 233 YPD 235 (235)
T ss_pred CCC
Confidence 653
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=5.8e-11 Score=113.39 Aligned_cols=376 Identities=10% Similarity=0.073 Sum_probs=256.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCC--c-hHHH-----HHHHHHHHh-------CC------ChHHHHHHHH
Q 007775 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIIN--R-KERY-----HILALCYYG-------AG------EDLVALNLLR 219 (590)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~--~-~~~~-----~~la~~~~~-------~g------~~~~A~~~~~ 219 (590)
..++..|+.-|.+.|.++.|...|++++..... | ..++ +.--.+-.. .| +.+-...-|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 357888999999999999999999988763321 1 1111 110111111 11 1222333344
Q ss_pred Hhhc----------CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcCCCCcchhhHHHHHHHHHHhhchhhc
Q 007775 220 TLLS----------GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE-CLGDGCDQMESTANCLLGISLSAQSKVA 288 (590)
Q Consensus 220 ~~l~----------~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 288 (590)
..+. ...+|+++..+.....+ ..++..+-+..|.++++ .+|.....-....|..+|..|...|+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l---~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~-- 402 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL---YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD-- 402 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhh---hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc--
Confidence 4331 14566677777666655 33445566777777765 45654444445688888999999988
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC---------------
Q 007775 289 ITDFDRATRQAKALQALVSAARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--------------- 349 (590)
Q Consensus 289 ~~~~~~~~~~~~A~~~~~~a~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------------- 349 (590)
.+.|...|++++ +..-.. ..+|..-|..-.+..+++.|+++.+++......
T Consensus 403 ---------l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 403 ---------LDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred ---------HHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 889999999988 553222 367788888888888999999988888744211
Q ss_pred ---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccc
Q 007775 350 ---SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (590)
Q Consensus 350 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 426 (590)
+. ..|..++......|-++....+|++.+++.- -.+.+..+.|..+....-++++.+.|++.+.+.+
T Consensus 473 lhrSl-kiWs~y~DleEs~gtfestk~vYdriidLri--aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------- 542 (835)
T KOG2047|consen 473 LHRSL-KIWSMYADLEESLGTFESTKAVYDRIIDLRI--ATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------- 542 (835)
T ss_pred HHHhH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-------
Confidence 12 5677788888888888888888999888765 5567777888888888888899999988887753
Q ss_pred ccccccccccccccchHHHHHHHHHHHHH---hcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 007775 427 SDKRFYKGSANHARSLELEVWLDLAFIYI---NLSQWHDAEICLSKSEAISSYS--ASKCHATGVLYEKKGLYKEAIKAF 501 (590)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 501 (590)
.|...++|+..-.-+. ..-+.+.|..+|+++++..|.. ...+...+.+-.+-|--..|+..|
T Consensus 543 -------------~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 543 -------------WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred -------------CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2555667765544333 3457889999999999988743 234666677777789999999999
Q ss_pred HHHhccCCCChhhHHHHHHHH-----HHcCCCchHHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHhCCCCchHHHHHHH
Q 007775 502 RSALNIDPAHVPSLISTAVVL-----RKLSDQSNAVIRSFLMAALRLDGMNS--SAWYNLGLFYKSQGTQSSKLEAAECF 574 (590)
Q Consensus 502 ~~al~~~p~~~~~~~~l~~~~-----~~~g~~~l~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~g~~~~~~~A~~~~ 574 (590)
+++-..-+. .-...+-.+| .-.|-. .-..+|+++++.-|++. ......+..-.+.|. .+.|..+|
T Consensus 610 erat~~v~~--a~~l~myni~I~kaae~yGv~---~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE---idRARaIy 681 (835)
T KOG2047|consen 610 ERATSAVKE--AQRLDMYNIYIKKAAEIYGVP---RTREIYEKAIESLPDSKAREMCLRFADLETKLGE---IDRARAIY 681 (835)
T ss_pred HHHHhcCCH--HHHHHHHHHHHHHHHHHhCCc---ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh---HHHHHHHH
Confidence 998654332 1122222222 233433 47788999999888754 344566888889999 99999999
Q ss_pred HHHhcccc
Q 007775 575 EAAASLEE 582 (590)
Q Consensus 575 ~~al~l~p 582 (590)
.-+-++.|
T Consensus 682 a~~sq~~d 689 (835)
T KOG2047|consen 682 AHGSQICD 689 (835)
T ss_pred HhhhhcCC
Confidence 99888754
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=4.9e-15 Score=121.75 Aligned_cols=113 Identities=16% Similarity=0.087 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcC
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLS 526 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 526 (590)
+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.+++++|.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007775 527 DQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQ 561 (590)
Q Consensus 527 ~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 561 (590)
+++ +|+..|+++++..|+++..+..+|.+....
T Consensus 107 ~~~--eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 107 EPG--LAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 998 999999999999999999999988887654
No 89
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=3.4e-12 Score=115.32 Aligned_cols=302 Identities=15% Similarity=0.007 Sum_probs=151.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHH
Q 007775 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (590)
Q Consensus 199 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~ 278 (590)
..-|..-+..|+|.+|.....+.-+ ..+.+...+..+.-...+.|+.+.+-.++.++-+..++..- .+....+
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae---~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l----~v~ltra 160 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAE---HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL----AVELTRA 160 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhh---cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH----HHHHHHH
Confidence 3445555667777777777777652 22222333333333344555565666666666654333221 2445555
Q ss_pred HHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHH
Q 007775 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (590)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 358 (590)
.....+|+ ++.|.....++. ...|.++.++.....+|...|++.+...++.++-+..--+..+.-..-
T Consensus 161 rlll~~~d-----------~~aA~~~v~~ll-~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le 228 (400)
T COG3071 161 RLLLNRRD-----------YPAARENVDQLL-EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE 228 (400)
T ss_pred HHHHhCCC-----------chhHHHHHHHHH-HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH
Confidence 55555555 556666666666 666666666666666666666666666655555443322220110000
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccccccc
Q 007775 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANH 438 (590)
Q Consensus 359 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (590)
-. ++. .++...++-..+.. +....+.-|..
T Consensus 229 ~~-----------------------------a~~---glL~q~~~~~~~~g-L~~~W~~~pr~----------------- 258 (400)
T COG3071 229 QQ-----------------------------AWE---GLLQQARDDNGSEG-LKTWWKNQPRK----------------- 258 (400)
T ss_pred HH-----------------------------HHH---HHHHHHhccccchH-HHHHHHhccHH-----------------
Confidence 00 000 00111111111111 11111111100
Q ss_pred ccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHH
Q 007775 439 ARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIST 518 (590)
Q Consensus 439 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 518 (590)
...++.+-..++.-+...|+.++|.+..+++++..-+. .....++ ...-+++..=++..++.++..|+++..+..|
T Consensus 259 -lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL 334 (400)
T COG3071 259 -LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL 334 (400)
T ss_pred -hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence 02234555555555666666666666666666544332 2111111 1234555556666666666666666666666
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
|.++.+.+.+. +|..+|+.++...|. ...|..+|.++.+.|+ ..+|.++++.++.
T Consensus 335 G~L~~k~~~w~--kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~---~~~A~~~r~e~L~ 389 (400)
T COG3071 335 GRLALKNKLWG--KASEALEAALKLRPS-ASDYAELADALDQLGE---PEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhhHHH--HHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC---hHHHHHHHHHHHH
Confidence 66666666666 666666666665553 3455666666666666 6666666666654
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1e-11 Score=117.54 Aligned_cols=387 Identities=14% Similarity=0.023 Sum_probs=233.9
Q ss_pred cccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCh
Q 007775 132 FVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGED 211 (590)
Q Consensus 132 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~ 211 (590)
+..++.+++|+... ..++...|.++..+.--..++...++|+.|....+.-.... ......+..+.|.++.++.
T Consensus 22 ~~~~~e~e~a~k~~-----~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTA-----NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred hccchHHHHHHHHH-----HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHHcccH
Confidence 44566777776543 33445557777777777778888888888876555432211 1122226778888888888
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcch----------------------
Q 007775 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM---------------------- 269 (590)
Q Consensus 212 ~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~---------------------- 269 (590)
++|+..++ . .++.+.....+.+.+++ ..+++++|+..|+..++.+.++.+..
T Consensus 96 Dealk~~~-~----~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 96 DEALKTLK-G----LDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHh-c----ccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 88888877 2 33444455666666655 44577788888876655332211100
Q ss_pred ----hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh--------CCCC-------hHHHHHHHHHHHHc
Q 007775 270 ----ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--------NMRD-------LSILYRLSLEYAEQ 330 (590)
Q Consensus 270 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~p~~-------~~~~~~la~~~~~~ 330 (590)
.-..+++.+.++...|+ |.+|++.+++++ .+ +.++ ..+...++.++..+
T Consensus 170 v~e~syel~yN~Ac~~i~~gk-----------y~qA~elL~kA~-~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGK-----------YNQAIELLEKAL-RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred CCcchHHHHHHHHHHHHhccc-----------HHHHHHHHHHHH-HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 11356777788888888 999999999984 32 1111 13567889999999
Q ss_pred cCHHHHHHHHHHHHcccCCCcHHHHHH----H---------------------------------------------HHH
Q 007775 331 RKLNAAHYYAKMLLKLEGGSNLKGWLL----M---------------------------------------------ARI 361 (590)
Q Consensus 331 g~~~~A~~~~~~~l~~~p~~~~~~~~~----l---------------------------------------------a~~ 361 (590)
|+..+|...|...++.+|.+. ..... + +.+
T Consensus 238 Gqt~ea~~iy~~~i~~~~~D~-~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPADE-PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcCCCc-hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887654 21111 1 111
Q ss_pred HHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccc
Q 007775 362 LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARS 441 (590)
Q Consensus 362 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (590)
.+..+.-+.+.+...+.-...| ....-.........+...+.+|..++....+..| .
T Consensus 317 ~l~tnk~~q~r~~~a~lp~~~p--~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p---------------------~ 373 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLPGMSP--ESLFPILLQEATKVREKKHKKAIELLLQFADGHP---------------------E 373 (652)
T ss_pred HHHhhhHHHHHHHHHhCCccCc--hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC---------------------c
Confidence 1111111111111111111111 1100001111122222244555555554444432 2
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHH--------HhcCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHhc
Q 007775 442 LELEVWLDLAFIYINLSQWHDAEICLSKS--------EAISSYSASKCHATGVLYEKKGLY-------KEAIKAFRSALN 506 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------~~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~ 506 (590)
....+...++.+...+|+++.|++.+... .+.. ..|.+...+-..+.+.++. ++|+.+++....
T Consensus 374 ~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 374 KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 23668888999999999999999999833 2222 2344455555556666654 455555555444
Q ss_pred cCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHH
Q 007775 507 IDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAEC 573 (590)
Q Consensus 507 ~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~ 573 (590)
-.+.....+...+..-.+.|+-+ +|...+++.++.+|++..+...+-..|.... .+.|..+
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~--ea~s~leel~k~n~~d~~~l~~lV~a~~~~d----~eka~~l 513 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEE--EASSLLEELVKFNPNDTDLLVQLVTAYARLD----PEKAESL 513 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchH--HHHHHHHHHHHhCCchHHHHHHHHHHHHhcC----HHHHHHH
Confidence 44444455667777778889988 9999999999999999999999888887664 4566554
No 91
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=8.3e-13 Score=119.22 Aligned_cols=276 Identities=16% Similarity=0.080 Sum_probs=210.5
Q ss_pred HHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHH
Q 007775 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (590)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 353 (590)
...-|..-...|+ |.+|.+...+.- +..+...-++..-+....+.|+.+.|-.++.++-+..+++...
T Consensus 87 ~~~egl~~l~eG~-----------~~qAEkl~~rna-e~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~ 154 (400)
T COG3071 87 ALNEGLLKLFEGD-----------FQQAEKLLRRNA-EHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA 154 (400)
T ss_pred HHHHHHHHHhcCc-----------HHHHHHHHHHhh-hcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH
Confidence 3334444555677 999999999987 7766666777778889999999999999999999996666557
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccc
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (590)
.....+.++...|+++.|..-..++.+..| .++.+......+|...|++.+...+..++-+..--+...+
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~p--r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-------- 224 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTP--RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-------- 224 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH--------
Confidence 888999999999999999999999999999 8899999999999999999999999888776531100000
Q ss_pred cccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChh
Q 007775 434 GSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVP 513 (590)
Q Consensus 434 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 513 (590)
..-...+|..+-+-....+..+.=..+++..-..-..++.....++.-+...|+.++|.+..+++++..-+..
T Consensus 225 ------~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~- 297 (400)
T COG3071 225 ------ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR- 297 (400)
T ss_pred ------HHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-
Confidence 0011223333322222333333333455554444455688888999999999999999999999998654432
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 514 SLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 514 ~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+..+ .-...-++.. .=++..++.+..+|++|..+..||..+.+.+. |.+|..+|+.++...|+..
T Consensus 298 -L~~~-~~~l~~~d~~--~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~---w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 298 -LCRL-IPRLRPGDPE--PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL---WGKASEALEAALKLRPSAS 362 (400)
T ss_pred -HHHH-HhhcCCCCch--HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH---HHHHHHHHHHHHhcCCChh
Confidence 2111 2234556766 78888899999999999999999999999999 9999999999999988753
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.63 E-value=3.9e-14 Score=128.92 Aligned_cols=198 Identities=14% Similarity=0.040 Sum_probs=141.5
Q ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchH
Q 007775 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (590)
Q Consensus 312 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 389 (590)
.++..+..++.+|..+...|++++|+..+++++...|+++. .+++.+|.++...|++++|+..++++++..| +++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~ 105 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP--NHPD 105 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCCc
Confidence 34566789999999999999999999999999999998651 4789999999999999999999999999998 4443
Q ss_pred ---HHHHHHHHHHHh-cCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 390 ---LLRTKAKVQLVQ-GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 390 ---~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
+++.+|.++... +....-...+.++++.... .....|.+...+. +.
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~---------------~~~~~p~~~~~~~--------------a~- 155 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQE---------------LIRRYPNSEYAPD--------------AK- 155 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH---------------HHHHCCCChhHHH--------------HH-
Confidence 678888888764 1111112334444443211 1122232222221 11
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
................+|.++...|++++|+..|++++...|+. +.++..+|.++...|+++ +|..+++.+..
T Consensus 156 --~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~--~A~~~~~~l~~ 231 (235)
T TIGR03302 156 --KRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD--LAQDAAAVLGA 231 (235)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH--HHHHHHHHHHh
Confidence 11111111112334578889999999999999999999887654 578999999999999998 99998887776
Q ss_pred hcC
Q 007775 543 LDG 545 (590)
Q Consensus 543 ~~p 545 (590)
..|
T Consensus 232 ~~~ 234 (235)
T TIGR03302 232 NYP 234 (235)
T ss_pred hCC
Confidence 655
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.63 E-value=7.6e-13 Score=130.14 Aligned_cols=295 Identities=15% Similarity=0.099 Sum_probs=210.6
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
........++...|+ +++|++.+++.. ..-++...++-..|.++.+.|++++|...|...++.+|++.
T Consensus 5 E~lLY~~~il~e~g~-----------~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 5 ELLLYKNSILEEAGD-----------YEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHHHHHHCCC-----------HHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 577777888999999 999999999887 77778888899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhccCCCCc----------hHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 007775 352 LKGWLLMARILSAQK-----RYEDAETILNAALDQTGKWEQ----------GELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (590)
Q Consensus 352 ~~~~~~la~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 416 (590)
..+..+..+..-.. ..+.-..+|++.....|.... .+-+...+..|....--...-.+|..+-.
T Consensus 73 -~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~ 151 (517)
T PF12569_consen 73 -DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKP 151 (517)
T ss_pred -HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 88888888874333 466777888888777763211 11111222222211100000011111111
Q ss_pred HH--hhhhhccccccc-----------ccccccccccchH--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHH
Q 007775 417 AL--QVQTKTFSSDKR-----------FYKGSANHARSLE--LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKC 481 (590)
Q Consensus 417 ~~--~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 481 (590)
+. |........... ..........|.. ..+++.++..|...|++++|+.++++++...|..++.+
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely 231 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY 231 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 10 000000000000 0000000112222 34668889999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc--CCC-----HHHHH--
Q 007775 482 HATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD--GMN-----SSAWY-- 552 (590)
Q Consensus 482 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~--p~~-----~~~~~-- 552 (590)
...|.++-..|++++|...++.+-.+++.+-.+-...+..+.+.|+.+ +|+..+....+.+ |.. .-.|+
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e--~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE--EAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH--HHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 999999999999999999999999999999888888899999999998 9999887765544 211 12455
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 553 NLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 553 ~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
..|.+|.+.|+ +..|+..|..+.+..-+.
T Consensus 310 e~a~a~~r~~~---~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 310 ECAEAYLRQGD---YGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Confidence 45999999999 999999999888765443
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=7.9e-12 Score=110.70 Aligned_cols=413 Identities=15% Similarity=0.038 Sum_probs=224.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHH
Q 007775 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (590)
Q Consensus 69 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 148 (590)
++-+++..|++++|+..|.-+... . ++.....+...|..+++ |.+.+|-..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~-~--~~~~el~vnLAcc~FyL----------------------g~Y~eA~~~---- 113 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK-D--DAPAELGVNLACCKFYL----------------------GQYIEAKSI---- 113 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc-C--CCCcccchhHHHHHHHH----------------------HHHHHHHHH----
Confidence 456889999999999999877665 1 22221222223333322 334444321
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 007775 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (590)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p 228 (590)
....|..|.--..|...-.+.|+-.... .|...++. ..+-...+|.+.+..-.|.+|+++|++++ ..+|
T Consensus 114 -----~~ka~k~pL~~RLlfhlahklndEk~~~-~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL--~dn~ 182 (557)
T KOG3785|consen 114 -----AEKAPKTPLCIRLLFHLAHKLNDEKRIL-TFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVL--QDNP 182 (557)
T ss_pred -----HhhCCCChHHHHHHHHHHHHhCcHHHHH-HHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHH--hcCh
Confidence 2233444443333444444555544333 34444432 23455677888888888889999999988 5666
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHH
Q 007775 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (590)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 308 (590)
+........+ +|+...+.++-+.+.+.--+...|+.+ .+....+....+.-. -..|.......
T Consensus 183 ey~alNVy~A-LCyyKlDYydvsqevl~vYL~q~pdSt-----iA~NLkacn~fRl~n-----------gr~ae~E~k~l 245 (557)
T KOG3785|consen 183 EYIALNVYMA-LCYYKLDYYDVSQEVLKVYLRQFPDST-----IAKNLKACNLFRLIN-----------GRTAEDEKKEL 245 (557)
T ss_pred hhhhhHHHHH-HHHHhcchhhhHHHHHHHHHHhCCCcH-----HHHHHHHHHHhhhhc-----------cchhHHHHHHH
Confidence 6555555555 778888888888888888888888776 455555544433322 11222222222
Q ss_pred HHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCch
Q 007775 309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (590)
Q Consensus 309 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 388 (590)
.+..+...+.+-...-.-+..-.+-+.|++++-..++.-| ++..+++..|.++++..+|..+.+. ..| ..+
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP----EARlNL~iYyL~q~dVqeA~~L~Kd---l~P--ttP 316 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP----EARLNLIIYYLNQNDVQEAISLCKD---LDP--TTP 316 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh----HhhhhheeeecccccHHHHHHHHhh---cCC--CCh
Confidence 2011111111110000000011122344444443333332 3455555555556666655555433 233 344
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHH---hhhh---hccc----cc-----------ccccccccccccchHHHHH
Q 007775 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAAL---QVQT---KTFS----SD-----------KRFYKGSANHARSLELEVW 447 (590)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~---~~~~----~~-----------~~~~~~~~~~~~~~~~~~~ 447 (590)
.-+...|.+....|+-....+.++-+-+.. ..+. +... .+ ...+-.....-..++....
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 444455555555554433333332222111 0000 0000 00 0000001122224455677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHHc
Q 007775 448 LDLAFIYINLSQWHDAEICLSKSEAISSY-SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH-VPSLISTAVVLRKL 525 (590)
Q Consensus 448 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~ 525 (590)
++++.++...|++.+|.+.|-+.....-. .......++.||...++++-|...+-+.- .|.. ...+..++..+.+.
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKA 474 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHH
Confidence 88999999999999999999877654423 34456689999999999999988876532 2332 34556778888899
Q ss_pred CCCchHHHHHHHHHHHhhcCCCHHHHH
Q 007775 526 SDQSNAVIRSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 526 g~~~l~~A~~~~~~a~~~~p~~~~~~~ 552 (590)
+++- -|-+.|...-.++|+ |+-|.
T Consensus 475 ~eFy--yaaKAFd~lE~lDP~-pEnWe 498 (557)
T KOG3785|consen 475 NEFY--YAAKAFDELEILDPT-PENWE 498 (557)
T ss_pred HHHH--HHHHhhhHHHccCCC-ccccC
Confidence 9887 788888887778884 55553
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=4.7e-15 Score=121.82 Aligned_cols=116 Identities=22% Similarity=0.192 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Q 007775 464 EICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 464 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
..+++++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|+++ +|+..|++++..
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~--~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT--TAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhc
Confidence 46789999998875 6678999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCCC
Q 007775 544 DGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 544 ~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~ 587 (590)
+|+++.+++.+|.++...|+ +++|+..|++++++.|+++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999 999999999999999998753
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.61 E-value=4.3e-12 Score=139.67 Aligned_cols=388 Identities=16% Similarity=0.031 Sum_probs=274.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 007775 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (590)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~ 240 (590)
..++...+..+...|++..+......+-.. +.-.......+..+...|++..+...+..+-. .....++......+.+
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~-~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPW-EVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCH-HHHhcCcchHHHHHHH
Confidence 345666677788899999888777654211 12233445567778888998887777765421 1111223333344433
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCC----CcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007775 241 CGEYPDLAEEGATFASRALECLGDG----CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (590)
Q Consensus 241 ~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~ 316 (590)
+ ...++++++...+.++....+.. ...........++.++...|+ +++|...+++++ ...+..
T Consensus 419 ~-~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-----------~~~A~~~~~~al-~~~~~~ 485 (903)
T PRK04841 419 A-QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGD-----------PEEAERLAELAL-AELPLT 485 (903)
T ss_pred H-HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHH-hcCCCc
Confidence 3 35568889999999887654431 122344566677888889999 999999999998 644432
Q ss_pred h-----HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-
Q 007775 317 L-----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAALDQTGKW- 385 (590)
Q Consensus 317 ~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~- 385 (590)
. .+...+|.++...|++++|...+++++...... ...++..++.++...|++++|...+++++......
T Consensus 486 ~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 486 WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 2 345678889999999999999999998653321 11456778999999999999999999998863211
Q ss_pred -----CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCCh
Q 007775 386 -----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQW 460 (590)
Q Consensus 386 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 460 (590)
.....+..+|.++...|++++|...+.+++...... ........+..++.++...|++
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-----------------~~~~~~~~~~~la~~~~~~G~~ 628 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-----------------QPQQQLQCLAMLAKISLARGDL 628 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-----------------CchHHHHHHHHHHHHHHHcCCH
Confidence 123345678899999999999999999998875311 0122355677899999999999
Q ss_pred HHHHHHHHHHHhcCCCC---HHHHH----HHHHHHHHcCCHHHHHHHHHHHhccCCCChh----hHHHHHHHHHHcCCCc
Q 007775 461 HDAEICLSKSEAISSYS---ASKCH----ATGVLYEKKGLYKEAIKAFRSALNIDPAHVP----SLISTAVVLRKLSDQS 529 (590)
Q Consensus 461 ~~A~~~~~~a~~~~p~~---~~~~~----~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~ 529 (590)
++|...+.++..+.+.. ..... .....+...|+.+.|..++.......+.... .+..++.++...|+++
T Consensus 629 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 708 (903)
T PRK04841 629 DNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFD 708 (903)
T ss_pred HHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHH
Confidence 99999999987653322 11111 1224455689999999998876653322221 2467899999999998
Q ss_pred hHHHHHHHHHHHhhcC------CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 530 NAVIRSFLMAALRLDG------MNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 530 l~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+|...+++++.... ....++..+|.++...|+ .++|...+.+++++.....
T Consensus 709 --~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~---~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 709 --EAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR---KSEAQRVLLEALKLANRTG 765 (903)
T ss_pred --HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhCccc
Confidence 99999999987532 223577889999999999 9999999999999875543
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=1.8e-14 Score=125.05 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=117.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHH-HHcCCC--chHHH
Q 007775 457 LSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVL-RKLSDQ--SNAVI 533 (590)
Q Consensus 457 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~--~l~~A 533 (590)
.++.++++..+++++..+|+++..|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|++ + +|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~--~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP--QT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH--HH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 677874 6 99
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 534 RSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 534 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
...++++++.+|+++.+++.+|..+...|+ +++|+.+|++++++.|.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999999999 9999999999999998765
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.9e-12 Score=109.48 Aligned_cols=184 Identities=18% Similarity=0.252 Sum_probs=164.2
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 007775 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (590)
Q Consensus 317 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~ 396 (590)
..++-....+....|+.+-|..++.+.....|++. .+....|..+...|++++|+++|+..++.+| .+..++.....
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlA 128 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-RVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHH
Confidence 34455566777889999999999999998889998 9999999999999999999999999999998 88888888888
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007775 397 VQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY 476 (590)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 476 (590)
+...+|+.-+|++.+...++.. +.|.++|..++.+|...|+|++|.-|+++++-+.|.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F----------------------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~ 186 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKF----------------------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF 186 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHh----------------------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999987 777999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCChhhHHHHHHHHHHc
Q 007775 477 SASKCHATGVLYEKKG---LYKEAIKAFRSALNIDPAHVPSLISTAVVLRKL 525 (590)
Q Consensus 477 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 525 (590)
++-.+..+|.+++-+| +.+-|.++|.++++++|.+..+++.+-.+....
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 9999999999988877 577899999999999998888887776655443
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=1e-09 Score=105.13 Aligned_cols=331 Identities=12% Similarity=0.065 Sum_probs=193.7
Q ss_pred CCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCC----Ch-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 007775 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK----CL-PALLIASKICGEYPDLAEEGATFASRALECLG 263 (590)
Q Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~----~~-~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~ 263 (590)
..+|.+++.|.....+ ..|+..+-+..|.++++ ..+|. .+ ..+...+++ +...|+.+.|...++++.+..-
T Consensus 343 RQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~-~vdP~ka~Gs~~~Lw~~fakl-Ye~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVK-TVDPKKAVGSPGTLWVEFAKL-YENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred hcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHH-ccCcccCCCChhhHHHHHHHH-HHhcCcHHHHHHHHHHhhcCCc
Confidence 4455555555544332 34555556666666553 23332 11 222333333 3444555566666666655322
Q ss_pred CCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCC------------------CChHHHHHHHH
Q 007775 264 DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM------------------RDLSILYRLSL 325 (590)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p------------------~~~~~~~~la~ 325 (590)
... .-.+.+|..-|..-....+ ++.|+.+.+++. .... .+..+|...+.
T Consensus 419 ~~v-~dLa~vw~~waemElrh~~-----------~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 419 KTV-EDLAEVWCAWAEMELRHEN-----------FEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred cch-HHHHHHHHHHHHHHHhhhh-----------HHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 211 1122344444444444444 566666666554 3211 12245677777
Q ss_pred HHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH---hc
Q 007775 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV---QG 402 (590)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~---~g 402 (590)
.....|-++.....|++++++.--.+ ....+.|..+....-++++.+.|++.+.+.+-|...++|+..-..+.+ --
T Consensus 486 leEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 77778888888888888888877777 777788888888888888888888888887766666666654444333 24
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHH
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELE-VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKC 481 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 481 (590)
+.+.|..+|+++++..| |.++. ++...+..-...|--..|+..|+++...-+.. -.
T Consensus 565 klEraRdLFEqaL~~Cp---------------------p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~ 621 (835)
T KOG2047|consen 565 KLERARDLFEQALDGCP---------------------PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QR 621 (835)
T ss_pred CHHHHHHHHHHHHhcCC---------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HH
Confidence 56788888888888765 44443 45555666667788888888888876543321 11
Q ss_pred HHHHHHHHH-----cCCHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc-CC-CHHHHH
Q 007775 482 HATGVLYEK-----KGLYKEAIKAFRSALNIDPAHV--PSLISTAVVLRKLSDQSNAVIRSFLMAALRLD-GM-NSSAWY 552 (590)
Q Consensus 482 ~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~-p~-~~~~~~ 552 (590)
+.+=.+|.. -| ...-...|+++++.-|+.. ......+.+-.+.|..+ .|..+|.-.-++. |. ++..|.
T Consensus 622 l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEid--RARaIya~~sq~~dPr~~~~fW~ 698 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEID--RARAIYAHGSQICDPRVTTEFWD 698 (835)
T ss_pred HHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHH--HHHHHHHhhhhcCCCcCChHHHH
Confidence 111122211 11 1233466777777766653 33455677777788877 8888877776653 32 355666
Q ss_pred HHHHHHHHhCC
Q 007775 553 NLGLFYKSQGT 563 (590)
Q Consensus 553 ~l~~~~~~~g~ 563 (590)
.--..-.+.|+
T Consensus 699 twk~FEvrHGn 709 (835)
T KOG2047|consen 699 TWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHhcCC
Confidence 65566666666
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.58 E-value=3.2e-13 Score=115.51 Aligned_cols=178 Identities=15% Similarity=0.093 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHH
Q 007775 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (590)
Q Consensus 334 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (590)
..+...+-+....+|++. .+ ..++..+...|+-+.+..+..+.....| .+..++..+|....+.|++.+|+..+++
T Consensus 50 ~~a~~al~~~~~~~p~d~-~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 50 QGAAAALGAAVLRNPEDL-SI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hHHHHHHHHHHhcCcchH-HH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 345666666677788877 66 8888888888888888888888777776 6777777788888888888888888888
Q ss_pred HHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 007775 414 LLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGL 493 (590)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 493 (590)
+.... |.+.++|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+
T Consensus 126 A~~l~----------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 126 AARLA----------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HhccC----------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 88876 66788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 007775 494 YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMA 539 (590)
Q Consensus 494 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~ 539 (590)
++.|..++..+....+.+..+..+++.+....|+++ +|.....+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~--~A~~i~~~ 227 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR--EAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH--HHHhhccc
Confidence 888888888888777778888888888888888887 77776543
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.57 E-value=3.3e-13 Score=115.39 Aligned_cols=176 Identities=15% Similarity=0.063 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007775 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (590)
Q Consensus 301 A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 380 (590)
+...+-... ..+|.+..+ ..++..+...|+-+.+..+..++...+|.+. .....+|......|++.+|+..++++..
T Consensus 52 a~~al~~~~-~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~-~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 52 AAAALGAAV-LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR-ELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHH-hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH-HHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 444444444 556666666 6666666666666666666666666666665 5555566666666666666666666666
Q ss_pred ccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCCh
Q 007775 381 QTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQW 460 (590)
Q Consensus 381 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 460 (590)
..| ++..+|..+|.+|.+.|++++|...|.+++++. |.++.+..++|..+.-.|++
T Consensus 129 l~p--~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~----------------------~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 129 LAP--TDWEAWNLLGAALDQLGRFDEARRAYRQALELA----------------------PNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred cCC--CChhhhhHHHHHHHHccChhHHHHHHHHHHHhc----------------------cCCchhhhhHHHHHHHcCCH
Confidence 666 666666666666666666666666666666665 44466666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 461 HDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 461 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
+.|..++..+....+.+..+..+++.+...+|++++|...-.+
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666666666666666666666666666666666666655543
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.57 E-value=1.4e-13 Score=133.14 Aligned_cols=223 Identities=15% Similarity=0.113 Sum_probs=195.7
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHH
Q 007775 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (590)
Q Consensus 315 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~l 394 (590)
.....-..++..+...|-...|+..|++. ..|-....+|...|+..+|..+..+-++.. .++..|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~---~d~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKD---PDPRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCC---CcchhHHHh
Confidence 33455677899999999999999999986 788888899999999999999999999843 567777777
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS 474 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 474 (590)
|++.....-|++|.++.+.. +..+...+|......++|+++.++++..++++
T Consensus 464 GDv~~d~s~yEkawElsn~~----------------------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI----------------------------SARAQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred hhhccChHHHHHHHHHhhhh----------------------------hHHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 77777666666666655532 24455667777778999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHH
Q 007775 475 SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNL 554 (590)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l 554 (590)
|-....|+.+|.+..+.++++.|.++|..++.++|++..+|++++..|.+.++.. +|...+.++++-+-.+..+|.+.
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~--ra~~~l~EAlKcn~~~w~iWENy 593 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK--RAFRKLKEALKCNYQHWQIWENY 593 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH--HHHHHHHHHhhcCCCCCeeeech
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999998899999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 555 GLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 555 ~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
-.+....|. +++|++.|.+.+.+.-
T Consensus 594 mlvsvdvge---~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 594 MLVSVDVGE---FEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhhhhccc---HHHHHHHHHHHHHhhh
Confidence 999999999 9999999999987643
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.57 E-value=4.9e-13 Score=116.07 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=90.5
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
.++.++++..++++++.+ |.+...|..+|.+|...|++++|+..|++++.+.|+++.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~----------------------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~ 109 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN----------------------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL 109 (198)
T ss_pred chhHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 455667777777777776 5557777777777777777777777777777777777777
Q ss_pred HHHHHHHH-HHcCC--HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 481 CHATGVLY-EKKGL--YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 481 ~~~l~~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
+..+|.++ ...|+ +++|...++++++.+|+++.++..+|..+...|+++ +|+..++++++..|.+.
T Consensus 110 ~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~--~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 110 YAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA--QAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCc
Confidence 77777754 55565 477777777777777777777777777777777777 77777777777766544
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.8e-12 Score=108.51 Aligned_cols=186 Identities=18% Similarity=0.111 Sum_probs=164.3
Q ss_pred ccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcc
Q 007775 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (590)
Q Consensus 346 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 425 (590)
..|+.. ..+-.+..+....|+.+.|..++++.....| ....+....|..+...|++++|+++|+..++-+
T Consensus 47 ~g~e~w-~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp--~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd------- 116 (289)
T KOG3060|consen 47 LGDEIW-TLYEQVFIAALDTGRDDLAQKCINQLRDRFP--GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD------- 116 (289)
T ss_pred cCchHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-------
Confidence 334433 5566667777888999999999999998888 778888889999999999999999999999887
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 426 SSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
|.+..++.....+...+|+.-+|++.+...++.++.++++|..++.+|...|+|++|.-++++++
T Consensus 117 ---------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 117 ---------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred ---------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 67788888888888999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 007775 506 NIDPAHVPSLISTAVVLRKLSDQS-NAVIRSFLMAALRLDGMNSSAWYNLGL 556 (590)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~g~~~-l~~A~~~~~~a~~~~p~~~~~~~~l~~ 556 (590)
-+.|-++..+..+|.++.-.|..+ +.-|.++|.+++++.|.+..+++.+-.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 999999999999999998877543 448999999999999988888876543
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.54 E-value=5e-13 Score=136.51 Aligned_cols=137 Identities=5% Similarity=-0.089 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAV 520 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 520 (590)
|.++.++..||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 521 VLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 521 ~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
++.+.|+++ +|+..|++++..+|+++.+|..+|.++...|+ .++|...|+++++...
T Consensus 163 ~l~~~g~~~--~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 163 SWDEIGQSE--QADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHhcchH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhC
Confidence 999999999 99999999999999999999999999999999 9999999999998754
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1.3e-11 Score=106.84 Aligned_cols=388 Identities=15% Similarity=0.092 Sum_probs=248.3
Q ss_pred ccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChH
Q 007775 133 VPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL 212 (590)
Q Consensus 133 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~ 212 (590)
+....++.+|..+ .....+.|.+....+.|+.+|....+|..|..++++.-...|......+..+..+++.+.+.
T Consensus 21 I~d~ry~DaI~~l-----~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 21 IRDARYADAIQLL-----GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHhhHHHHHHHH-----HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 3344566666655 23345667788889999999999999999999999999989999998999999999999999
Q ss_pred HHHHHHHHhhcCCCCCC-ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CCcchhhHHHHHHHHHHhhchhhccC
Q 007775 213 VALNLLRTLLSGSEDPK-CLPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAIT 290 (590)
Q Consensus 213 ~A~~~~~~~l~~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (590)
.|+.+...+. .+|. ......+.+.+.+... +...+... ++..|. +. +......|.+..+.|+
T Consensus 96 DALrV~~~~~---D~~~L~~~~lqLqaAIkYse~-Dl~g~rsL----veQlp~en~----Ad~~in~gCllykegq---- 159 (459)
T KOG4340|consen 96 DALRVAFLLL---DNPALHSRVLQLQAAIKYSEG-DLPGSRSL----VEQLPSENE----ADGQINLGCLLYKEGQ---- 159 (459)
T ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHHhcccc-cCcchHHH----HHhccCCCc----cchhccchheeecccc----
Confidence 9999999887 2233 2233333444544443 33244444 344553 22 2477888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc----cCCCc---------------
Q 007775 291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL----EGGSN--------------- 351 (590)
Q Consensus 291 ~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~--------------- 351 (590)
++.|++-|+.++ +...-++-.-++++.++++.|++..|+++..++++. .|.-.
T Consensus 160 -------yEaAvqkFqaAl-qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 160 -------YEAAVQKFQAAL-QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred -------HHHHHHHHHHHH-hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 999999999999 998888999999999999999999999998888754 33210
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhh
Q 007775 352 ---------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (590)
Q Consensus 352 ---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 422 (590)
..++...+.++++.|+++.|.+.+..+--...+.-++..+.+++..-. .+++.+...-+.-.+.++
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n---- 306 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN---- 306 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC----
Confidence 145566667777777777777665543322222233445555554332 355666666666666665
Q ss_pred hcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHH
Q 007775 423 KTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKE 496 (590)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~ 496 (590)
|--.+++.++-.+|++..-++-|...+-+ +|.. +..+..+-.+-..+-..++
T Consensus 307 ------------------PfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEe 364 (459)
T KOG4340|consen 307 ------------------PFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEE 364 (459)
T ss_pred ------------------CCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHH
Confidence 33356677777777777777777655433 3322 1112222222223344555
Q ss_pred HHHHHHHHhccCCCChhhHHHH-HHHHHHcCCCc---hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHH
Q 007775 497 AIKAFRSALNIDPAHVPSLIST-AVVLRKLSDQS---NAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAE 572 (590)
Q Consensus 497 A~~~~~~al~~~p~~~~~~~~l-~~~~~~~g~~~---l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~ 572 (590)
|.+-+...-..- ..-+..+ +.+.......+ +..|++.|+.++++. ..+....+++|....+ +..+.+
T Consensus 365 a~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~D---y~~vEk 435 (459)
T KOG4340|consen 365 AFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLED---YPMVEK 435 (459)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccc---cHHHHH
Confidence 554444322110 0111111 11111111111 224555566665543 3456677889999999 999999
Q ss_pred HHHHHhccccCCC
Q 007775 573 CFEAAASLEETAP 585 (590)
Q Consensus 573 ~~~~al~l~p~~~ 585 (590)
.|+...+...++.
T Consensus 436 ~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 436 IFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHhhhcccc
Confidence 9999888765554
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.54 E-value=1.4e-12 Score=133.95 Aligned_cols=234 Identities=18% Similarity=0.133 Sum_probs=182.9
Q ss_pred hhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-----
Q 007775 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW----- 385 (590)
Q Consensus 311 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----- 385 (590)
..+|.+..++..++..+...+++++|+..++..++.+|+.. ..++.+|.++.+.+++.++..+ .++...+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i-~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI-SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce-ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 45788899999999999999999999999999999999999 9999999999999998888777 666555411
Q ss_pred ------------CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHH
Q 007775 386 ------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFI 453 (590)
Q Consensus 386 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 453 (590)
.+..+++.+|.+|-++|+.++|...|+++++.+ |.++.+.+++|..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----------------------~~n~~aLNn~AY~ 159 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD----------------------RDNPEIVKKLATS 159 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------------------cccHHHHHHHHHH
Confidence 122677788888888888888888888888887 5668888888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh-------------------
Q 007775 454 YINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS------------------- 514 (590)
Q Consensus 454 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------- 514 (590)
|... +.++|+.++.+++.. +...+++.++.+++.+.+..+|++.+.
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHH
Confidence 8888 888888888888765 455567777777777777777776443
Q ss_pred -HHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh----------------CCC-CchHHHHHHHHH
Q 007775 515 -LISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQ----------------GTQ-SSKLEAAECFEA 576 (590)
Q Consensus 515 -~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----------------g~~-~~~~~A~~~~~~ 576 (590)
+.-+-..|...++++ +++.+++.+++.+|.+..+...++.+|... ++. .++..|+.-|++
T Consensus 225 ~~~~l~~~y~~~~~~~--~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek 302 (906)
T PRK14720 225 LLEDLYEPYKALEDWD--EVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEK 302 (906)
T ss_pred HHHHHHHHHhhhhhhh--HHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHH
Confidence 222336677888888 999999999999999999999999888642 110 125667777777
Q ss_pred HhccccCCCC
Q 007775 577 AASLEETAPV 586 (590)
Q Consensus 577 al~l~p~~~~ 586 (590)
-+..+|++-+
T Consensus 303 ~i~f~~G~yv 312 (906)
T PRK14720 303 NIVFDTGNFV 312 (906)
T ss_pred HeeecCCCEE
Confidence 7777766543
No 108
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.52 E-value=1.2e-13 Score=124.46 Aligned_cols=277 Identities=16% Similarity=0.090 Sum_probs=205.1
Q ss_pred HHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHH------cc
Q 007775 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLL------KL 346 (590)
Q Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l------~~ 346 (590)
-|.-+++.|+ ....+..|+.++ +....+. .+|..+|.+|+..++|++|+++...-+ ..
T Consensus 23 EGERLck~gd-----------craGv~ff~aA~-qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd 90 (639)
T KOG1130|consen 23 EGERLCKMGD-----------CRAGVDFFKAAL-QVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD 90 (639)
T ss_pred HHHHHHhccc-----------hhhhHHHHHHHH-HhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc
Confidence 3556778888 889999999999 8876665 457789999999999999999754433 22
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----CCCCchHHHHHHHHHHHHhcCH-------------hHHHH
Q 007775 347 EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT----GKWEQGELLRTKAKVQLVQGQL-------------KGAVE 409 (590)
Q Consensus 347 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~la~~~~~~g~~-------------~~A~~ 409 (590)
.-... .+.-++|.++--.|.|++|+.+..+-+... .......+++++|.+|...|+. +++..
T Consensus 91 klGEA-KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 91 KLGEA-KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred hhccc-cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 22233 566789999999999999999988766553 2223467899999999887642 34444
Q ss_pred HHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHH
Q 007775 410 TYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS------ASKCHA 483 (590)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~ 483 (590)
.++.+++....+-+... ...+......++-++|+.|.-.|+|+.|+..-+.-+.+.... -.++.+
T Consensus 170 al~~Av~fy~eNL~l~~---------~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sN 240 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSE---------KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSN 240 (639)
T ss_pred HHHHHHHHHHHHHHHHH---------HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 45555444322211100 112222335678899999999999999998888766654322 457889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcc----CC--CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc------CCCHHHH
Q 007775 484 TGVLYEKKGLYKEAIKAFRSALNI----DP--AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD------GMNSSAW 551 (590)
Q Consensus 484 l~~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~------p~~~~~~ 551 (590)
+|.++.-.|+++.|++.|++.+.+ .. ..+...+.||..|.-..+++ +|+.++.+-+.+. -....++
T Consensus 241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~--kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ--KAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999987643 22 23556789999999999998 9999999877643 2346788
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 552 YNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 552 ~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
+.||..+-..|. .++|+.+.++.+++
T Consensus 319 wSLgna~~alg~---h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 319 WSLGNAFNALGE---HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHhhhh---HHHHHHHHHHHHHH
Confidence 999999999999 99999999888765
No 109
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=3.5e-13 Score=117.45 Aligned_cols=118 Identities=20% Similarity=0.155 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 523 (590)
++-+..-|+-+.+.++|.+|+..|.+|++++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45566667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 524 KLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
.+|++. +|++.|+++++++|++...+.+|..+-.+.+.
T Consensus 161 ~~gk~~--~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 161 ALGKYE--EAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ccCcHH--HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 888888 88888888888888888888888777777766
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=1.7e-13 Score=112.79 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=100.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 465 ICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 465 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
..+++++..+|++......+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++ +|..++++++..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE--EAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcC
Confidence 45778888888888888888888888888888888888888888888888888888888888888 8888888888888
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 545 GMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 545 p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
|+++..++.+|.++...|+ +++|+..|+++++++|+++.
T Consensus 82 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGE---PESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccccch
Confidence 8888888888888888888 88888888888888887765
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.51 E-value=2.9e-12 Score=124.22 Aligned_cols=218 Identities=17% Similarity=0.128 Sum_probs=188.8
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
.....++..+...|- ...|+..|++.- .|-....+|...|+..+|.....+-++. |.++
T Consensus 399 q~q~~laell~slGi-----------tksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~ 457 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGI-----------TKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK-DPDP 457 (777)
T ss_pred hHHHHHHHHHHHcch-----------HHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC-CCcc
Confidence 356677888888888 889999988754 6677888999999999999999999994 4445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccc
Q 007775 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (590)
Q Consensus 352 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 431 (590)
..|..+|.+.....-|++|.++.+. .+..+...+|......++|.++...++..++++
T Consensus 458 -~lyc~LGDv~~d~s~yEkawElsn~--------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n------------- 515 (777)
T KOG1128|consen 458 -RLYCLLGDVLHDPSLYEKAWELSNY--------ISARAQRSLALLILSNKDFSEADKHLERSLEIN------------- 515 (777)
T ss_pred -hhHHHhhhhccChHHHHHHHHHhhh--------hhHHHHHhhccccccchhHHHHHHHHHHHhhcC-------------
Confidence 6787888777766666666666554 344566677777788999999999999999998
Q ss_pred cccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007775 432 YKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH 511 (590)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 511 (590)
|....+|+.+|.+..+.+++..|.++|..++...|++..+|++++..|.+.|+..+|...++++++.+-++
T Consensus 516 ---------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 516 ---------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred ---------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 66689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Q 007775 512 VPSLISTAVVLRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
..+|.+.-.+..+.|.++ +|++.+.+.+.+
T Consensus 587 w~iWENymlvsvdvge~e--da~~A~~rll~~ 616 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEFE--DAIKAYHRLLDL 616 (777)
T ss_pred CeeeechhhhhhhcccHH--HHHHHHHHHHHh
Confidence 999999999999999999 999999988764
No 112
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.50 E-value=4.5e-13 Score=120.80 Aligned_cols=310 Identities=14% Similarity=0.031 Sum_probs=216.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHcCCCCCch----HHHHHHHHHHHhCCChHHHHHHHHHhhcC----CCCCCChHHHHHHHH
Q 007775 168 SFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLRTLLSG----SEDPKCLPALLIASK 239 (590)
Q Consensus 168 ~~~~~~~g~~~~a~~~~e~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~p~~~~~~~~~a~ 239 (590)
+.-+++.|+....+..|+.+++...++. .+|.++|+.|+..++|++|+++-..-+.. +..-......-.++.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3457899999999999999998877764 46778999999999999999875433210 111111222222222
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCC-CCcchhhHHHHHHHHHHhhchhhccC---------hHHHHHHHHHHHHHHHHHH
Q 007775 240 ICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAIT---------DFDRATRQAKALQALVSAA 309 (590)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~A~~~~~~a~ 309 (590)
.+...|.+++|+.+..+-+.+... ......+++++++|.+|...|+.-.. ..+....++.|.+.|..-+
T Consensus 104 -tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 -TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred -hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 234567888999998887776544 23334567999999999998874321 1233344667777776655
Q ss_pred HhhCCC------ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC-----CcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007775 310 RSTNMR------DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-----SNLKGWLLMARILSAQKRYEDAETILNAA 378 (590)
Q Consensus 310 ~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 378 (590)
++... ...++-++|..|+-.|+|+.|+...+.-+.+... ....++.++|.++...|+++.|+++|+..
T Consensus 183 -~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 183 -ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred -HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 44221 1256778889999999999999988776654322 11167889999999999999999999987
Q ss_pred Hhcc----CCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHH
Q 007775 379 LDQT----GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIY 454 (590)
Q Consensus 379 ~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 454 (590)
+.+. .....+..-+.+|..|.-..++++|+.++.+-+.+... ..+......++..+|..+
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe----------------L~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE----------------LEDRIGELRACWSLGNAF 325 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHH
Confidence 6543 32234556779999999999999999999998888642 233345577899999999
Q ss_pred HhcCChHHHHHHHHHHHhcC----CC--CHHHHHHHHHHHHHcCCHH
Q 007775 455 INLSQWHDAEICLSKSEAIS----SY--SASKCHATGVLYEKKGLYK 495 (590)
Q Consensus 455 ~~~g~~~~A~~~~~~a~~~~----p~--~~~~~~~l~~~~~~~g~~~ 495 (590)
...|..++|+.+.+..++.. .. ...+..++...-...|..+
T Consensus 326 ~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 99999999998888776542 11 2334555555555555543
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.50 E-value=4.3e-12 Score=129.71 Aligned_cols=142 Identities=11% Similarity=0.005 Sum_probs=118.5
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
.+++++..+|.+....|.+++|...++.+++.. |++..++..++.++.+.+++++|+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~----------------------Pd~~~a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF----------------------PDSSEAFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC----------------------CCcHHHHHHHHHHHHHhccHHHHHH
Confidence 667888888888888888888888888888887 6668888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
.+++++...|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++.++|.++...|+.+ +|...|++++....
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~--~A~~~~~~a~~~~~ 219 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW--RARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhC
Confidence 8888888888888888888888888888888888888888888888888888888888888887 88888888888765
Q ss_pred CCHHHH
Q 007775 546 MNSSAW 551 (590)
Q Consensus 546 ~~~~~~ 551 (590)
+-...+
T Consensus 220 ~~~~~~ 225 (694)
T PRK15179 220 DGARKL 225 (694)
T ss_pred cchHHH
Confidence 544443
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.49 E-value=1.4e-10 Score=127.81 Aligned_cols=352 Identities=16% Similarity=0.046 Sum_probs=247.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCC-----CC--ChHHHH
Q 007775 164 LDHLSFAFSIAGDLSSLATQIEELLP-GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED-----PK--CLPALL 235 (590)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~e~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----p~--~~~~~~ 235 (590)
....+..+...|++..+...++.+-. ....++......+.++...|++++|...+..+...... +. ......
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 33445566778888887777655311 11234555677788889999999999999887632111 11 112222
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCC
Q 007775 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (590)
Q Consensus 236 ~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~ 315 (590)
..+.+ ....|++++|...+++++...+.........+...+|.++...|+ +++|...+++++ .....
T Consensus 457 ~~a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~-----------~~~A~~~~~~al-~~~~~ 523 (903)
T PRK04841 457 LRAQV-AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE-----------LARALAMMQQTE-QMARQ 523 (903)
T ss_pred HHHHH-HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHH-HHHhh
Confidence 33333 345678899999999999866654433344567888999999999 999999999988 54221
Q ss_pred --C----hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC-----Cc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 007775 316 --D----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-----SN--LKGWLLMARILSAQKRYEDAETILNAALDQT 382 (590)
Q Consensus 316 --~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 382 (590)
+ ..++..+|.++...|++++|...+++++..... .. ...+..++.++...|++++|...+.+++...
T Consensus 524 ~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 524 HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 1 245677899999999999999999998865221 11 1345577889999999999999999998764
Q ss_pred CC---CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchH--HHHHHHHHHHHHhc
Q 007775 383 GK---WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLE--LEVWLDLAFIYINL 457 (590)
Q Consensus 383 ~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~ 457 (590)
.. ......+..++.++...|++++|...+.++........ . ... ..........+...
T Consensus 604 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 604 SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR----------------Y-HSDWIANADKVRLIYWQMT 666 (903)
T ss_pred hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc----------------c-cHhHhhHHHHHHHHHHHHC
Confidence 31 12345666789999999999999999999988743210 0 000 11111123445668
Q ss_pred CChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCChhhHHHHHHHHHHcCC
Q 007775 458 SQWHDAEICLSKSEAISSYSAS----KCHATGVLYEKKGLYKEAIKAFRSALNID------PAHVPSLISTAVVLRKLSD 527 (590)
Q Consensus 458 g~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~ 527 (590)
|+.+.|..++.......+.... .+..++.++...|++++|...+++++... +....++..+|.++...|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 9999999998776653322221 25678999999999999999999998752 1234578889999999999
Q ss_pred CchHHHHHHHHHHHhhcCCC
Q 007775 528 QSNAVIRSFLMAALRLDGMN 547 (590)
Q Consensus 528 ~~l~~A~~~~~~a~~~~p~~ 547 (590)
.+ +|...+.++++.....
T Consensus 747 ~~--~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 747 KS--EAQRVLLEALKLANRT 764 (903)
T ss_pred HH--HHHHHHHHHHHHhCcc
Confidence 98 9999999999976544
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=1.2e-11 Score=127.13 Aligned_cols=244 Identities=14% Similarity=0.049 Sum_probs=169.8
Q ss_pred hhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHH
Q 007775 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (590)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~ 234 (590)
.-.|.+...+..|+..+...|+++++.+.++..+...|+....|+.+|.++.+.+++.++..+ .++. .-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~------ 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFS------ 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcc------
Confidence 334566677777777777788888888888777777777777888888777777776666555 3331 111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCC
Q 007775 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (590)
Q Consensus 235 ~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p 314 (590)
..... .+++++...+...+.+. .+++.+|.||.+.|+ .++|...|++++ +.+|
T Consensus 95 ---------~~~~~-~~ve~~~~~i~~~~~~k-----~Al~~LA~~Ydk~g~-----------~~ka~~~yer~L-~~D~ 147 (906)
T PRK14720 95 ---------QNLKW-AIVEHICDKILLYGENK-----LALRTLAEAYAKLNE-----------NKKLKGVWERLV-KADR 147 (906)
T ss_pred ---------cccch-hHHHHHHHHHHhhhhhh-----HHHHHHHHHHHHcCC-----------hHHHHHHHHHHH-hcCc
Confidence 11122 44444444444455544 477888888888888 778888888888 8888
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHH
Q 007775 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (590)
Q Consensus 315 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~l 394 (590)
.++.++.++|..|... +.++|+.++.+++.. +...+++.++.+++.+.+...| ++.+.+..+
T Consensus 148 ~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~--~d~d~f~~i 209 (906)
T PRK14720 148 DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS--DDFDFFLRI 209 (906)
T ss_pred ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc--ccchHHHHH
Confidence 8888888888888777 888888887777644 4455677778888888877777 555544332
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS 474 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 474 (590)
-......-.+ ..-...+.-+-..|...++|++++..++.+++.+
T Consensus 210 ~~ki~~~~~~------------------------------------~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 210 ERKVLGHREF------------------------------------TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred HHHHHhhhcc------------------------------------chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 2222111111 1224556666778899999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 007775 475 SYSASKCHATGVLYE 489 (590)
Q Consensus 475 p~~~~~~~~l~~~~~ 489 (590)
|.+..+...++.+|.
T Consensus 254 ~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 254 NKNNKAREELIRFYK 268 (906)
T ss_pred CcchhhHHHHHHHHH
Confidence 999999999999986
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.48 E-value=3.3e-13 Score=123.91 Aligned_cols=250 Identities=16% Similarity=0.072 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNM-RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 376 (590)
|..++...+ .. ...+ ........+.+.+..+|+++..+.-... ..+... .+...++..+...++-+.++..++
T Consensus 17 Y~~~i~e~~-~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l-~av~~la~y~~~~~~~e~~l~~l~ 90 (290)
T PF04733_consen 17 YQQCINEAS-LK-SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPEL-QAVRLLAEYLSSPSDKESALEELK 90 (290)
T ss_dssp HHHHCHHHH-CH-TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCC-HHHHHHHHHHCTSTTHHCHHHHHH
T ss_pred HHHHHHHhh-cc-CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhH-HHHHHHHHHHhCccchHHHHHHHH
Confidence 778876655 22 2222 2345677888999999998876654433 223333 677777777766566677777766
Q ss_pred HHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh
Q 007775 377 AALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN 456 (590)
Q Consensus 377 ~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 456 (590)
..+.......+..+....|.++...|++++|++.+.+. .+.+.......+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---------------------------~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 91 ELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---------------------------GSLELLALAVQILLK 143 (290)
T ss_dssp HCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------------------------CcccHHHHHHHHHHH
Confidence 65544332245556667778888889999998877643 225666777889999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHH
Q 007775 457 LSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKG--LYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 457 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
.++++.|.+.++.+.+.+++..-+....+++....| ++.+|...|++..+..|..+..++.++.++..+|+++ +|.
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~--eAe 221 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYE--EAE 221 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HH--HHH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHH--HHH
Confidence 999999999999998888776666666666666666 5899999999988887888889999999999999998 999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHhccccCCC
Q 007775 535 SFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSK-LEAAECFEAAASLEETAP 585 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~-~~A~~~~~~al~l~p~~~ 585 (590)
..+.+++..+|+++.++.+++.+....|+ . +.+.+++.+....+|++|
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk---~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGK---PTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT----TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999998 6 667778888777888776
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.44 E-value=2.8e-12 Score=105.46 Aligned_cols=110 Identities=21% Similarity=0.192 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAV 520 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 520 (590)
|.+......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+++..++.+|.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 93 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAE 93 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 66678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHhhcCCCHHHHH
Q 007775 521 VLRKLSDQSNAVIRSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 521 ~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~ 552 (590)
++...|+++ +|+..|+++++.+|++.....
T Consensus 94 ~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 94 CLLALGEPE--SALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHHcCCHH--HHHHHHHHHHHhccccchHHH
Confidence 999999999 999999999999998876543
No 118
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.41 E-value=7.3e-12 Score=115.08 Aligned_cols=233 Identities=17% Similarity=0.126 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccC--C
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--G 349 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~ 349 (590)
.....+..++..+|+ ++..+.... ...+....+...++..+...++-+.++..++..+.... .
T Consensus 36 e~~~~~~Rs~iAlg~-----------~~~vl~ei~----~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~ 100 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQ-----------YDSVLSEIK----KSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGES 100 (290)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHS-----TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---C
T ss_pred HHHHHHHHHHHHcCC-----------hhHHHHHhc----cCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccc
Confidence 355556666666776 554443322 22233445566666655554566666666665553322 2
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccc
Q 007775 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (590)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 429 (590)
++ ......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+-+.+
T Consensus 101 ~~-~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----------- 161 (290)
T PF04733_consen 101 NE-IVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----------- 161 (290)
T ss_dssp HH-HHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-----------
T ss_pred cH-HHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------
Confidence 33 45555667777778888888776542 346667778888888888888888887776554
Q ss_pred cccccccccccchHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007775 430 RFYKGSANHARSLELEVWLDLAFIYINLS--QWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI 507 (590)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 507 (590)
.+..-+....+.+....| ++.+|...|++.....+.++..++.++.++..+|++++|...+++++..
T Consensus 162 -----------eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 162 -----------EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred -----------CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 223333333444444444 6899999999988888888889999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 508 DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 508 ~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
+|+++.++.+++.+....|+.. +.+.+++.++...+|+++.+
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~-~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPT-EAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TC-HHHHHHHHHCHHHTTTSHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCh-hHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999884 25777888887888887654
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.40 E-value=4e-12 Score=101.61 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAV 520 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 520 (590)
+...+..+.+|..+...|++++|...|+-...++|.++..|++||.++..+|++++|+..|.+++.++|+++.++.++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCCchHHHHHHHHHHHhhc
Q 007775 521 VLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 521 ~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
++...|+.+ .|++.|+.++...
T Consensus 112 c~L~lG~~~--~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVC--YAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHH--HHHHHHHHHHHHh
Confidence 777777766 7777777777655
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.3e-10 Score=99.18 Aligned_cols=182 Identities=13% Similarity=0.027 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 007775 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (590)
Q Consensus 247 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~ 326 (590)
+++++++++..-.+..|.+. ..+..+|.||....+ +..|..+|++.- ...|......+..+..
T Consensus 25 ry~DaI~~l~s~~Er~p~~r-----AgLSlLgyCYY~~Q~-----------f~~AA~CYeQL~-ql~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSR-----AGLSLLGYCYYRLQE-----------FALAAECYEQLG-QLHPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHHHhcCccch-----HHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-hhChHHHHHHHHHHHH
Confidence 44455555555555555433 355556666666665 666666666655 5555555555555666
Q ss_pred HHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhH
Q 007775 327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG 406 (590)
Q Consensus 327 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~ 406 (590)
+.+.+.+..|+.+...+.+...-.. .....-+.+.+..+++..+..+.++. |..+++......|.+..+.|++++
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~-~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHS-RVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccchheeeccccHHH
Confidence 6666666666665555443311112 33444444555555555555444442 212334455555555555566666
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 407 AVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 407 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
|++-|+.+++.. .-.+-.-++++.++.+.|+++.|+++..+.++
T Consensus 163 AvqkFqaAlqvs----------------------GyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 163 AVQKFQAALQVS----------------------GYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHHHhhc----------------------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666665555553 22234445555555555666665555554443
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.38 E-value=1.8e-11 Score=97.95 Aligned_cols=112 Identities=7% Similarity=-0.094 Sum_probs=104.2
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC
Q 007775 469 KSEAIS-SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN 547 (590)
Q Consensus 469 ~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~ 547 (590)
....+. ++..+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++. +|+..|.+++.++|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~--~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWG--EAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCCCC
Confidence 334566 7778889999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 548 SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
|..++++|.++...|+ .+.|.+.|+.++...-++|
T Consensus 103 p~~~~~ag~c~L~lG~---~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 103 PQAPWAAAECYLACDN---VCYAIKALKAVVRICGEVS 137 (157)
T ss_pred chHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhccCh
Confidence 9999999999999999 9999999999998774444
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=1.1e-11 Score=108.21 Aligned_cols=120 Identities=22% Similarity=0.307 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL 467 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 467 (590)
++-+..-|.-..+.++|.+|+..|.++++++ |.++..|.+.+.+|.++|.++.|++-+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~----------------------P~nAVyycNRAAAy~~Lg~~~~AVkDc 138 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELD----------------------PTNAVYYCNRAAAYSKLGEYEDAVKDC 138 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----------------------CCcchHHHHHHHHHHHhcchHHHHHHH
Confidence 3445567888889999999999999999998 677999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc
Q 007775 468 SKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS 529 (590)
Q Consensus 468 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 529 (590)
+.++.++|....+|..||.+|..+|++++|++.|++++.++|++...+.+|..+-.+.+...
T Consensus 139 e~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 139 ESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999888877766543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=4.4e-10 Score=104.83 Aligned_cols=160 Identities=17% Similarity=0.082 Sum_probs=125.5
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccc
Q 007775 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (590)
Q Consensus 348 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 427 (590)
|... .+++..+..++..|++++|+..++..+...| +++..+...+.++...++..+|.+.+++++...
T Consensus 303 ~~~~-aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------- 370 (484)
T COG4783 303 RGGL-AAQYGRALQTYLAGQYDEALKLLQPLIAAQP--DNPYYLELAGDILLEANKAKEAIERLKKALALD--------- 370 (484)
T ss_pred ccch-HHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------
Confidence 5666 7888888888888888888888888888887 788888888888888888888888888888887
Q ss_pred cccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007775 428 DKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI 507 (590)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 507 (590)
|.....+.++|..|.+.|++.+|+..+++.+..+|+++..|..++..|..+|+..+|...+.
T Consensus 371 -------------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A----- 432 (484)
T COG4783 371 -------------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA----- 432 (484)
T ss_pred -------------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----
Confidence 45577888888888888888888888888888888888888888888888888776655443
Q ss_pred CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHH
Q 007775 508 DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAW 551 (590)
Q Consensus 508 ~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~ 551 (590)
..+...|+++ +|+..+..+.+...-+...|
T Consensus 433 ------------E~~~~~G~~~--~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 433 ------------EGYALAGRLE--QAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred ------------HHHHhCCCHH--HHHHHHHHHHHhccCCcHHH
Confidence 4445567777 88888888877653333333
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=8.2e-10 Score=103.07 Aligned_cols=153 Identities=19% Similarity=0.118 Sum_probs=96.9
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHH
Q 007775 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (590)
Q Consensus 314 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 393 (590)
|....+++..+..+...|++++|+..++..+...|+|+ ..+...+.++...++.++|.+.+++++...| ....++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~-~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P--~~~~l~~~ 379 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP-YYLELAGDILLEANKAKEAIERLKKALALDP--NSPLLQLN 379 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CccHHHHH
Confidence 44556666666666666666666666666666666666 6666666666666666666666666666666 44666666
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007775 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI 473 (590)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 473 (590)
+|..+.+.|++.+|+..++..+..+ |.++..|..|+..|..+|+..+|...
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~----------------------p~dp~~w~~LAqay~~~g~~~~a~~A------- 430 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFND----------------------PEDPNGWDLLAQAYAELGNRAEALLA------- 430 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcC----------------------CCCchHHHHHHHHHHHhCchHHHHHH-------
Confidence 6666666666666666666666554 45566666666666666665555432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007775 474 SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID 508 (590)
Q Consensus 474 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 508 (590)
.+..+...|++++|+..+..+.+..
T Consensus 431 ----------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 ----------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ----------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 2344455666666666666665543
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.27 E-value=9.5e-11 Score=112.10 Aligned_cols=114 Identities=14% Similarity=0.046 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcC
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLS 526 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 526 (590)
+...|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 007775 527 DQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQG 562 (590)
Q Consensus 527 ~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 562 (590)
+++ +|+..|+++++++|+++.+...++.+...+.
T Consensus 85 ~~~--eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 EYQ--TAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999988876663
No 126
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.22 E-value=4.9e-09 Score=93.62 Aligned_cols=315 Identities=13% Similarity=0.065 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHcCC-CCcchhhH
Q 007775 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK--ICGEYPDLAEEGATFASRALECLGD-GCDQMEST 272 (590)
Q Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~--~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~ 272 (590)
...+..|.-++...++++|+..+.+.+. .-.+...-+..++. -.....+++++++.+.-..+....+ +...+.-.
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~--~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLE--KLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHH--HHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778889999999999999883 22221111111111 1123556776766665544444333 22234456
Q ss_pred HHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHccc
Q 007775 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD-----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (590)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 347 (590)
++.+++..+....+ +.+++.+-+..+ .+.... ..+...++..+.-.+.++++++.|+.+++..
T Consensus 85 a~lnlar~~e~l~~-----------f~kt~~y~k~~l-~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A 152 (518)
T KOG1941|consen 85 AYLNLARSNEKLCE-----------FHKTISYCKTCL-GLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYA 152 (518)
T ss_pred HHHHHHHHHHHHHH-----------hhhHHHHHHHHh-cCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 88888888877777 888888877766 553222 2667789999999999999999999999764
Q ss_pred CCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC--C------chHHHHHHHHHHHHhcCHhHHHHHHHHH
Q 007775 348 GGS-----NLKGWLLMARILSAQKRYEDAETILNAALDQTGKW--E------QGELLRTKAKVQLVQGQLKGAVETYTHL 414 (590)
Q Consensus 348 p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 414 (590)
..+ ...++..++.++....++++|.-+..++.++.... + ...+++.++..+..+|+...|.++.+++
T Consensus 153 ~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 153 HNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEA 232 (518)
T ss_pred hccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 332 22578899999999999999999999998875321 1 1346778899999999999999999999
Q ss_pred HHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHH
Q 007775 415 LAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY------SASKCHATGVLY 488 (590)
Q Consensus 415 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~ 488 (590)
.++.- ...+.+........+|++|...|+.+.|..-|+.+...... ...++...+.++
T Consensus 233 ~klal----------------~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~ 296 (518)
T KOG1941|consen 233 MKLAL----------------QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCL 296 (518)
T ss_pred HHHHH----------------HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 98863 22445667888899999999999999999999988764321 134455555555
Q ss_pred HHcCCHHH-----HHHHHHHHhccCCCC------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 489 EKKGLYKE-----AIKAFRSALNIDPAH------VPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 489 ~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
....-..+ |++.-++++++...- ...+..++.+|..+|.-+ +-...+.++-+
T Consensus 297 ~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d--~~~~h~~ra~~ 359 (518)
T KOG1941|consen 297 ETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQD--ELRAHVVRAHE 359 (518)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHH
Confidence 44433333 777777776654221 345678899998888777 65555555433
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.22 E-value=1.7e-09 Score=94.98 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007775 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLS 468 (590)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 468 (590)
..++..|......|++.+|+..|++++...|.. +....+.+.+|.++...|++++|+..++
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s-------------------~~a~~A~l~la~a~y~~~~y~~A~~~~~ 66 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNS-------------------PYAPQAQLMLAYAYYKQGDYEEAIAAYE 66 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS-------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444444444444444444444444444322 3334444444455555555555555555
Q ss_pred HHHhcCCCC---HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCh-----------------hhHHH
Q 007775 469 KSEAISSYS---ASKCHATGVLYEKK-----------GLYKEAIKAFRSALNIDPAHV-----------------PSLIS 517 (590)
Q Consensus 469 ~a~~~~p~~---~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~-----------------~~~~~ 517 (590)
+.+...|++ +.+++.+|.++..+ +...+|+..|+..+...|+.. .--..
T Consensus 67 ~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 67 RFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444 22344444443322 123355555555555555542 22345
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHhCCCCchHHHH
Q 007775 518 TAVVLRKLSDQSNAVIRSFLMAALRLDGMNS---SAWYNLGLFYKSQGTQSSKLEAA 571 (590)
Q Consensus 518 l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~g~~~~~~~A~ 571 (590)
+|..|.+.|.+. .|+..++.+++..|+.+ .++..++..|.++|. .+.|.
T Consensus 147 ia~~Y~~~~~y~--aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~---~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYK--AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL---KQAAD 198 (203)
T ss_dssp HHHHHHCTT-HH--HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT----HHHHH
T ss_pred HHHHHHHcccHH--HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC---hHHHH
Confidence 788888889888 89999999999888875 567788889999998 76443
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.19 E-value=4.9e-09 Score=94.12 Aligned_cols=180 Identities=13% Similarity=-0.066 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCch-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG-ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 431 (590)
..++..|..+...|++++|++.|++++...|..... .+...+|.++.+.+++++|+..+++.++.+|++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~---------- 102 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---------- 102 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC----------
Confidence 455566666666666666666666666666522111 123456666666666666666666666666544
Q ss_pred cccccccccchHHHHHHHHHHHHHhcCC------------------hHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHH
Q 007775 432 YKGSANHARSLELEVWLDLAFIYINLSQ------------------WHDAEICLSKSEAISSYSASK---CHATGVLYEK 490 (590)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------~~~A~~~~~~a~~~~p~~~~~---~~~l~~~~~~ 490 (590)
|..+.+++.+|.++...++ ..+|+..|++.++..|++..+ ...+..+.
T Consensus 103 ---------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~-- 171 (243)
T PRK10866 103 ---------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK-- 171 (243)
T ss_pred ---------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH--
Confidence 4445566666655433321 124455555555555554221 11111110
Q ss_pred cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHhCCCCch
Q 007775 491 KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN---SSAWYNLGLFYKSQGTQSSK 567 (590)
Q Consensus 491 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~~ 567 (590)
..+ ..--...|..|.+.|.+. .|+.-++.+++..|+. ++++..++..|..+|. .
T Consensus 172 ------------~~l------a~~e~~ia~~Y~~~~~y~--AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~---~ 228 (243)
T PRK10866 172 ------------DRL------AKYELSVAEYYTKRGAYV--AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL---N 228 (243)
T ss_pred ------------HHH------HHHHHHHHHHHHHcCchH--HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC---h
Confidence 000 122346777888888888 8888899998888765 4677888889999999 8
Q ss_pred HHHHHHHHH
Q 007775 568 LEAAECFEA 576 (590)
Q Consensus 568 ~~A~~~~~~ 576 (590)
++|..+...
T Consensus 229 ~~a~~~~~~ 237 (243)
T PRK10866 229 AQADKVAKI 237 (243)
T ss_pred HHHHHHHHH
Confidence 888776654
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.19 E-value=4e-09 Score=109.62 Aligned_cols=236 Identities=14% Similarity=0.076 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc-cCCCc---HHHHHHHHHHHHHcCChHHHHHHH
Q 007775 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL-EGGSN---LKGWLLMARILSAQKRYEDAETIL 375 (590)
Q Consensus 300 ~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~---~~~~~~la~~~~~~g~~~~A~~~~ 375 (590)
+..+-|++.+ ..+|+....|......+.+.++.++|.+.+++++.. ++... ...|..+-++...-|.-+.-.+.|
T Consensus 1442 esaeDferlv-rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFERLV-RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred cCHHHHHHHH-hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 4556678888 888999999999999999999999999999999853 33321 145666666666667778888899
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHH
Q 007775 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYI 455 (590)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 455 (590)
++|.+.. +...++..|..+|...+++++|.++++.+++.. .....+|..++..++
T Consensus 1521 eRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF----------------------~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1521 ERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF----------------------GQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh----------------------cchhhHHHHHHHHHh
Confidence 9998876 456788899999999999999999999999986 345789999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHH
Q 007775 456 NLSQWHDAEICLSKSEAISSY--SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVI 533 (590)
Q Consensus 456 ~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A 533 (590)
++++-+.|...+.+|++.-|. +.......+.+-++.|+.+.+..+|+..+..+|...+.|.-+...-.++|+.. .+
T Consensus 1576 ~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~--~v 1653 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK--YV 1653 (1710)
T ss_pred cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH--HH
Confidence 999999999999999999888 67778888999999999999999999999999999999999999999999988 99
Q ss_pred HHHHHHHHhh--cCCCHHHHHHHHHHHHHh-CC
Q 007775 534 RSFLMAALRL--DGMNSSAWYNLGLFYKSQ-GT 563 (590)
Q Consensus 534 ~~~~~~a~~~--~p~~~~~~~~l~~~~~~~-g~ 563 (590)
+.+|++++.+ .|......+..=.-|.+. |+
T Consensus 1654 R~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999875 455555555554445444 56
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.19 E-value=1.1e-09 Score=93.78 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=101.2
Q ss_pred HHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh
Q 007775 377 AALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN 456 (590)
Q Consensus 377 ~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 456 (590)
......+.+.....++.+|..+...|++++|+.+|++++...|+. +....++..+|.++..
T Consensus 24 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~la~~~~~ 84 (172)
T PRK02603 24 KILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-------------------NDRSYILYNMGIIYAS 84 (172)
T ss_pred HHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-------------------chHHHHHHHHHHHHHH
Confidence 334444444556677888888888888888888888888775321 2235678888888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHH
Q 007775 457 LSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSF 536 (590)
Q Consensus 457 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~ 536 (590)
.|++++|+..+++++...|.++..+..+|.++...|+...+...+++++. .++ +|.++
T Consensus 85 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~--~A~~~ 142 (172)
T PRK02603 85 NGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFD--KAAEY 142 (172)
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHH--HHHHH
Confidence 88888888888888888888888888888888888887766665555432 134 77888
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 537 LMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 537 ~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
+++++..+|++ +...+..+...|+
T Consensus 143 ~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 143 WKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHhhCchh---HHHHHHHHHhcCc
Confidence 88888877765 3344444444443
No 131
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.1e-10 Score=97.99 Aligned_cols=123 Identities=24% Similarity=0.183 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc-hHHHHHHHH
Q 007775 460 WHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS-NAVIRSFLM 538 (590)
Q Consensus 460 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-l~~A~~~~~ 538 (590)
.+.-+.-++.-+..+|++.+.|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++....+-. -.++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566667788888999999999999999999999999999999999999999999999999887654332 248999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 539 AALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 539 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+++..+|.++.+.+.||..++..|+ +.+|...++..+++.|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~---~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGD---YAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999 9999999999999887553
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.18 E-value=2.3e-09 Score=94.06 Aligned_cols=158 Identities=18% Similarity=0.107 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCC-CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGK-WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 431 (590)
..++..|..+...|++.+|+..|+++....|. +....+.+.+|.++...|++++|+..+++.++..|++
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~---------- 75 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS---------- 75 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----------
Confidence 45556666666666666666666666665552 1234555666666666666666666666666666544
Q ss_pred cccccccccchHHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCHHH-----------------HHH
Q 007775 432 YKGSANHARSLELEVWLDLAFIYINL-----------SQWHDAEICLSKSEAISSYSASK-----------------CHA 483 (590)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~~p~~~~~-----------------~~~ 483 (590)
|..+.+++.+|.++... +...+|+..|+..+...|+++.+ -..
T Consensus 76 ---------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 76 ---------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp ---------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554433 33568899999999999988432 345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHHcCCCc
Q 007775 484 TGVLYEKKGLYKEAIKAFRSALNIDPAHV---PSLISTAVVLRKLSDQS 529 (590)
Q Consensus 484 l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~ 529 (590)
+|..|.+.|.+..|+..++.+++..|+.. .++..++..+.++|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 68899999999999999999999999874 57888999999999876
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.18 E-value=4.4e-10 Score=107.56 Aligned_cols=113 Identities=21% Similarity=0.189 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
+...|......|++++|+..|+++++.+ |.++.++..+|.++...|++++|+..++++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~----------------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD----------------------PNNAELYADRAQANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888999999999999999999998 666899999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHc
Q 007775 471 EAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKL 525 (590)
Q Consensus 471 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 525 (590)
+.++|.++.+++.+|.++...|++++|+..|++++.++|++..+...++.+....
T Consensus 63 l~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 63 IELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888886555
No 134
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.15 E-value=1.9e-08 Score=104.73 Aligned_cols=220 Identities=15% Similarity=0.063 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-CC--CCchHHHHHHHHHHHHhcCHhHHHH
Q 007775 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT-GK--WEQGELLRTKAKVQLVQGQLKGAVE 409 (590)
Q Consensus 333 ~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~--~~~~~~~~~la~~~~~~g~~~~A~~ 409 (590)
-.+..+-|++.+..+|++. ..|..+.....+.++.++|.+..++++..- +. .....+|..+-++...-|.-+.-.+
T Consensus 1440 ~pesaeDferlvrssPNSS-i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSS-ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcc-hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3445677888999999999 999999999999999999999999999764 21 1335677788888888888888889
Q ss_pred HHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007775 410 TYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYE 489 (590)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 489 (590)
.|+++.+.. +...++..|..+|...+++++|.++|+.+++...+...+|..+|..++
T Consensus 1519 VFeRAcqyc-----------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1519 VFERACQYC-----------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHHHHHHhc-----------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 999999885 336689999999999999999999999999999888999999999999
Q ss_pred HcCCHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCch
Q 007775 490 KKGLYKEAIKAFRSALNIDPA--HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSK 567 (590)
Q Consensus 490 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~ 567 (590)
++.+-+.|...+.+|++.-|. +.......|.+-++.|+.+ .+..+|+..+..+|...+.|.-+...-.+.|+ .
T Consensus 1576 ~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae--RGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~ 1650 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE--RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---I 1650 (1710)
T ss_pred cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch--hhHHHHHHHHhhCccchhHHHHHHHHHHccCC---H
Confidence 999999999999999999987 7888999999999999999 99999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHhccc
Q 007775 568 LEAAECFEAAASLE 581 (590)
Q Consensus 568 ~~A~~~~~~al~l~ 581 (590)
+.+...|++++.+.
T Consensus 1651 ~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998764
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=9.1e-10 Score=88.31 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYS---ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLIST 518 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 518 (590)
.+++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677777777777777777777777776655 4566777777777777777777777777766664 4567777
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHH
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAW 551 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~ 551 (590)
|.++...|+++ +|...++++++..|+++.+.
T Consensus 83 ~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKE--KAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChH--HHHHHHHHHHHHCcCChhHH
Confidence 77777777776 77777777777777665443
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=4.8e-10 Score=89.95 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC---HHHH
Q 007775 478 ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN---SSAW 551 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~---~~~~ 551 (590)
+.+++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|+++ +|+..|++++..+|++ +.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYA--DAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHCCCCCcccHHH
Confidence 4678999999999999999999999999998876 568899999999999999 9999999999998875 6789
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 552 YNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 552 ~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
..+|.++...|+ +++|...++++++..|+++.
T Consensus 80 ~~~~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 80 LKLGMSLQELGD---KEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHhCC---hHHHHHHHHHHHHHCcCChh
Confidence 999999999999 99999999999999998874
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.13 E-value=1.3e-08 Score=91.41 Aligned_cols=197 Identities=11% Similarity=0.017 Sum_probs=136.2
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CchHH
Q 007775 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG---WLLMARILSAQKRYEDAETILNAALDQTGKW-EQGEL 390 (590)
Q Consensus 315 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~ 390 (590)
.++..++..|..+...|++++|+..|++++...|..+ .+ .+.+|.++.+.+++++|+..+++.++..|.. ....+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4677889999999999999999999999999999876 44 4899999999999999999999999999833 34567
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchH-HHHHHHHHHHHH---hcCChHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLE-LEVWLDLAFIYI---NLSQWHDAEIC 466 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~---~~g~~~~A~~~ 466 (590)
++.+|.++...++- .+......++.+ . .+.. ..+...+-.+.. ...-..+|...
T Consensus 109 ~Y~~g~~~~~~~~~-----~~~~~~~~~~~~----------------r-D~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 109 LYMRGLTNMALDDS-----ALQGFFGVDRSD----------------R-DPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred HHHHHHhhhhcchh-----hhhhccCCCccc----------------c-CHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 77777665543321 122221111100 0 0111 112233333333 33333444433
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 007775 467 LSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQSNAVIRSFLMA 539 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~l~~A~~~~~~ 539 (590)
+..+ ...-..--...|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..+ +|..+...
T Consensus 167 l~~l---~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~--~a~~~~~~ 237 (243)
T PRK10866 167 LVFL---KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA--QADKVAKI 237 (243)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH--HHHHHHHH
Confidence 3322 22223445578999999999999999999999988765 578889999999999988 88876543
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.10 E-value=2.8e-09 Score=90.88 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHH
Q 007775 368 YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVW 447 (590)
Q Consensus 368 ~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (590)
+..+...+...++..+.......++.+|.++...|++++|+..|++++...++. +..+.++
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------------------~~~~~~~ 75 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-------------------YDRSYIL 75 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-------------------hhhHHHH
Confidence 444445554444444433445666777777777777777777777777664211 2234567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007775 448 LDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYE 489 (590)
Q Consensus 448 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 489 (590)
.++|.++...|++++|+.++++++.+.|.....+..+|.++.
T Consensus 76 ~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 76 YNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777766
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.09 E-value=1.1e-09 Score=83.97 Aligned_cols=98 Identities=35% Similarity=0.440 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...++++ +|...+++++...|.++.++..+|.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYE--EALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 35666777777777777777777777777776667777777777777776 7777777777777777777777777777
Q ss_pred HhCCCCchHHHHHHHHHHhcccc
Q 007775 560 SQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 560 ~~g~~~~~~~A~~~~~~al~l~p 582 (590)
..|+ +++|...+.++++..|
T Consensus 80 ~~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHHh---HHHHHHHHHHHHccCC
Confidence 7777 7777777777777665
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.07 E-value=5.8e-06 Score=83.30 Aligned_cols=379 Identities=15% Similarity=0.052 Sum_probs=214.8
Q ss_pred hcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 007775 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (590)
Q Consensus 173 ~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 252 (590)
..+++..|....++.++..|+..-+....|..+.+.|+.++|..+++..- ...+++...+-.. ..|+...+..++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~--~~~~~D~~tLq~l-~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALY--GLKGTDDLTLQFL-QNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhc--cCCCCchHHHHHH-HHHHHHHhhhhHHH
Confidence 45778888888888888888888888888888888999999887776665 4555544443333 46777888888899
Q ss_pred HHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-Hcc
Q 007775 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYA-EQR 331 (590)
Q Consensus 253 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~-~~g 331 (590)
.+|+++...+|+ . ...+.+=.+|.+.+. |.+-.+.--+.. +..|.++..+.....+.+ ...
T Consensus 98 ~~Ye~~~~~~P~-e-----ell~~lFmayvR~~~-----------yk~qQkaa~~Ly-K~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 98 HLYERANQKYPS-E-----ELLYHLFMAYVREKS-----------YKKQQKAALQLY-KNFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHhhCCc-H-----HHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-HhCCcccchHHHHHHHHHHhcc
Confidence 999998888887 3 244444445555544 333222222233 334666644433333332 222
Q ss_pred CH---------HHHHHHHHHHHccc-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH-hccCCCCchHHHHHHHHHHHH
Q 007775 332 KL---------NAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAAL-DQTGKWEQGELLRTKAKVQLV 400 (590)
Q Consensus 332 ~~---------~~A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~la~~~~~ 400 (590)
.. .-|.+.+++.++.. +-....-....-.++..+|++++|...+..-+ +..+ ..+..........+..
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~-~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT-SANLYLENKKLDLLKL 238 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHH
Confidence 22 23455666666655 22221223344456677888888888884332 2222 1344455566677777
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccc--------c--------ccccc---------cccccc-cchHHHHHHHHHHHH
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSS--------D--------KRFYK---------GSANHA-RSLELEVWLDLAFIY 454 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~--------~--------~~~~~---------~~~~~~-~~~~~~~~~~la~~~ 454 (590)
.+++.+-.+...+++..++++...+.. . ..... +..... ...-.-++..+-.-+
T Consensus 239 l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~ 318 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRY 318 (932)
T ss_pred hcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHh
Confidence 788887777777777777665111000 0 00000 011111 111123444444445
Q ss_pred HhcCChHHHHHHHHHHHhcCCCC------------HHH------------------------HHHHHHHHHHcCCH----
Q 007775 455 INLSQWHDAEICLSKSEAISSYS------------ASK------------------------CHATGVLYEKKGLY---- 494 (590)
Q Consensus 455 ~~~g~~~~A~~~~~~a~~~~p~~------------~~~------------------------~~~l~~~~~~~g~~---- 494 (590)
..-|+.+++...|-+-+..-|-. +.. +...-.+....|.+
T Consensus 319 ~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 319 KLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred cccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 57788999887776555433211 000 11111111222321
Q ss_pred -HHHHHHH-------HHHhcc----CCCC---hhh-----HHHHHHHHHHcCCCc-hHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 495 -KEAIKAF-------RSALNI----DPAH---VPS-----LISTAVVLRKLSDQS-NAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 495 -~~A~~~~-------~~al~~----~p~~---~~~-----~~~l~~~~~~~g~~~-l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
+.-..++ ++-++. .|.+ ... -..+.+++.+.++.. +-+|+-.++..+..+|.+...-..
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLl 478 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLL 478 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 1111122 222111 1221 112 233445566666554 337888999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHH
Q 007775 554 LGLFYKSQGTQSSKLEAAECFEA 576 (590)
Q Consensus 554 l~~~~~~~g~~~~~~~A~~~~~~ 576 (590)
+-.+|...|- +..|.+.|+.
T Consensus 479 LiriY~~lGa---~p~a~~~y~t 498 (932)
T KOG2053|consen 479 LIRIYSYLGA---FPDAYELYKT 498 (932)
T ss_pred HHHHHHHhcC---ChhHHHHHHh
Confidence 9999999999 8888888864
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=4e-10 Score=79.89 Aligned_cols=66 Identities=32% Similarity=0.551 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKG-LYKEAIKAFRSALNIDP 509 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p 509 (590)
+.+|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5667777777777777777777777777777777777777777777777 57777777777777665
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.07 E-value=2e-09 Score=92.12 Aligned_cols=119 Identities=17% Similarity=0.163 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS---ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIS 517 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 517 (590)
+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 5667788999999999999999999999999877654 4678999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 518 TAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 518 l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
+|.++...|+.. .+...+..++ .. +++|.+++++++.++|++
T Consensus 112 lg~~~~~~g~~~--~a~~~~~~A~--------------------~~---~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKA--EEAGDQDEAE--------------------AL---FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChH--hHhhCHHHHH--------------------HH---HHHHHHHHHHHHhhCchh
Confidence 999999988876 6555544443 24 667777777777777765
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=2.4e-07 Score=91.70 Aligned_cols=231 Identities=17% Similarity=0.070 Sum_probs=155.3
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHH------------HHHcCCCCCchH
Q 007775 129 GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQI------------EELLPGIINRKE 196 (590)
Q Consensus 129 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------------e~~~~~~~~~~~ 196 (590)
.++|+..|+.++|...... -....+|.+++.+..+..+++.|.-++ .++.+ +++ +
T Consensus 735 FSfyvtiG~MD~AfksI~~----------IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e 801 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAAFKSIQF----------IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--E 801 (1416)
T ss_pred eeEEEEeccHHHHHHHHHH----------HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--c
Confidence 3467777788777554321 123456778888777777777665554 23322 222 3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHH
Q 007775 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (590)
Q Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 276 (590)
.-...|......|..++|..+|++.-+ +-++-++ ++..|..++|.++.+. .+..-....|+.
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKl-yQs~g~w~eA~eiAE~-------~DRiHLr~Tyy~ 863 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKL-YQSQGMWSEAFEIAET-------KDRIHLRNTYYN 863 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHH-HHhcccHHHHHHHHhh-------ccceehhhhHHH
Confidence 334556777889999999999999872 1112223 3445566666665432 221122247777
Q ss_pred HHHHHhhchhhccChHHHHHHHHHHHHHHHHHHH---------hhCC----------CChHHHHHHHHHHHHccCHHHHH
Q 007775 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAAR---------STNM----------RDLSILYRLSLEYAEQRKLNAAH 337 (590)
Q Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---------~~~p----------~~~~~~~~la~~~~~~g~~~~A~ 337 (590)
.+..+...++ .+.|+++|+++-. .-+| .++..|...|......|+.+.|+
T Consensus 864 yA~~Lear~D-----------i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 864 YAKYLEARRD-----------IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHHhhcc-----------HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 7777777777 8888888876420 2222 23455666788888889999999
Q ss_pred HHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 007775 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (590)
Q Consensus 338 ~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 417 (590)
.+|..+ .-|+.+.++.+-+|+.++|..+-++. .+..+-+.+|+.|...|++.+|+..|.++-..
T Consensus 933 ~~Y~~A---------~D~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 933 SFYSSA---------KDYFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHh---------hhhhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 999876 56777788888899999988776652 45566779999999999999999999887654
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.1e-07 Score=81.79 Aligned_cols=229 Identities=16% Similarity=0.079 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 377 (590)
|..++..-++.- ..+.++.....+.+.|...|.+...+.-....- ..+..+...++.....-++.++-+..+.+
T Consensus 24 yq~~ine~~~~~--~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 24 YQQCINEAEKFS--SSKTDVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred HHHHHHHHHhhc--cccchhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 555555544432 223556666677777777776654333222111 11113333444443333333333333333
Q ss_pred HHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhc
Q 007775 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINL 457 (590)
Q Consensus 378 a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 457 (590)
.+.......+......-+.++...|++++|+........ .++...-..++.+.
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---------------------------lE~~Al~VqI~lk~ 150 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---------------------------LEAAALNVQILLKM 150 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---------------------------HHHHHHHHHHHHHH
Confidence 222211112222333334445555555555554443221 12222223444444
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHH
Q 007775 458 SQWHDAEICLSKSEAISSYSASKCHATGVLYEK----KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVI 533 (590)
Q Consensus 458 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A 533 (590)
.+.+-|.+.++++.+++.+ .++..||..+.. .++..+|.-+|++.-+..|..+..++.++.++..+|+++ +|
T Consensus 151 ~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e--eA 226 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE--EA 226 (299)
T ss_pred HHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH--HH
Confidence 4555555555555444322 222222222221 123444555555544444444445555555555555554 55
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 534 RSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 534 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
...++.++..++++|+++.++-.+-...|.
T Consensus 227 e~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 227 ESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 555555555555555555555544444444
No 145
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.06 E-value=9.3e-08 Score=85.68 Aligned_cols=311 Identities=16% Similarity=0.100 Sum_probs=213.6
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHH---hhCCC-
Q 007775 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR---STNMR- 315 (590)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~p~- 315 (590)
+-+....+.++|+....+.+....+..+.+ ..+-.+..+...+|. +++++..--..+. ..+..
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf--~~lG~l~~a~s~~g~-----------y~~mL~~a~sqi~~a~~~~ds~ 80 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRF--RVLGCLVTAHSEMGR-----------YKEMLKFAVSQIDTARELEDSD 80 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHH--HHhccchhhhhhhHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333456677788888888877554432211 345555666777777 6665554322220 11111
Q ss_pred -ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc---
Q 007775 316 -DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG----SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ--- 387 (590)
Q Consensus 316 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--- 387 (590)
..+++.+++..+.+.-++.+++.+-...+..... ........++..+...+.++++++.|+.+++.....++
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L 160 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML 160 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee
Confidence 1367889999999999999999988887765322 22256777899999999999999999999988653333
Q ss_pred -hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhh-hcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 388 -GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT-KTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 388 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
..+...+|.++....++++|.-+..++.++..+.. +.|.. .....+.+.++..+..+|...+|.+
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~-------------kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL-------------KYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH-------------HHHHHHHHHHHHHHHHhcccccHHH
Confidence 34778999999999999999999999998863221 11110 1235678889999999999999999
Q ss_pred HHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CChhhHHHHHHHHHHcCCCc---h
Q 007775 466 CLSKSEAIS------SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP------AHVPSLISTAVVLRKLSDQS---N 530 (590)
Q Consensus 466 ~~~~a~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~---l 530 (590)
+.+++.++. +-.......+|.+|...|+.+.|..-|+++..... ....++...+.++....-.. -
T Consensus 228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~ 307 (518)
T KOG1941|consen 228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICN 307 (518)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999987753 22245577899999999999999999999876432 12455666666655433322 0
Q ss_pred HHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 531 AVIRSFLMAALRLDGMN------SSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 531 ~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
=.|+++-.+++++...- ...+..++.+|...|. -++=...+.++-+
T Consensus 308 Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl---~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 308 CRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGL---QDELRAHVVRAHE 359 (518)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHH
Confidence 03777777777654321 2456778999999988 6665555555443
No 146
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.06 E-value=9.4e-09 Score=95.53 Aligned_cols=204 Identities=15% Similarity=0.056 Sum_probs=137.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccc-----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC----chHHHHH
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLE-----GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRT 393 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~ 393 (590)
.|..|...|++++|...|.++.... +......+...+.++... ++++|+.+++++++.....+ -..++..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3456677788888888888876442 122224566666666555 99999999999998753212 2567889
Q ss_pred HHHHHHHh-cCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 394 KAKVQLVQ-GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 394 la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
+|.+|... |++++|++.|+++++..... ........++..+|.++...|+|++|+..|++...
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----------------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQE----------------GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHT----------------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHC----------------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999 99999999999999987432 11123356888999999999999999999999887
Q ss_pred cCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh-----HHHHHHHHHHcCCCc-hHHHHHHHHH
Q 007775 473 ISSYS-------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS-----LISTAVVLRKLSDQS-NAVIRSFLMA 539 (590)
Q Consensus 473 ~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~~~g~~~-l~~A~~~~~~ 539 (590)
..-++ ...+...+.|+...|++..|...+++....+|..... ...+..++. .|+.+ +.+++.-|++
T Consensus 184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAVAEYDS 262 (282)
T ss_dssp TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHCHHHTT
T ss_pred HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHcc
Confidence 53221 2345677889999999999999999999998876433 333344433 33333 3355555555
Q ss_pred HHhhc
Q 007775 540 ALRLD 544 (590)
Q Consensus 540 a~~~~ 544 (590)
.-+++
T Consensus 263 ~~~ld 267 (282)
T PF14938_consen 263 ISRLD 267 (282)
T ss_dssp SS---
T ss_pred cCccH
Confidence 44443
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=2.5e-09 Score=91.21 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCCchHHHH
Q 007775 460 WHDAEICLSKSEAISSYS--ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 460 ~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|+++ +|+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~--eA~ 92 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT--KAL 92 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH--HHH
Confidence 444444454444444433 5556777777777888888888888887766543 347778888888888877 888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHH-------HhCCCCchH-------HHHHHHHHHhccccCC
Q 007775 535 SFLMAALRLDGMNSSAWYNLGLFYK-------SQGTQSSKL-------EAAECFEAAASLEETA 584 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l~~~~~-------~~g~~~~~~-------~A~~~~~~al~l~p~~ 584 (590)
..+++++.++|.....+..+|.++. ..|+ ++ +|..+|++++..+|++
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGD---SEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHccc---HHHHHHHHHHHHHHHHHHHHhCccc
Confidence 8888888888877777777777777 5556 55 6666677777777753
No 148
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.06 E-value=2.2e-06 Score=77.93 Aligned_cols=290 Identities=14% Similarity=-0.022 Sum_probs=214.1
Q ss_pred HHHhcCCHHHHHHHHHHHcCCCCCc--hHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCC
Q 007775 170 AFSIAGDLSSLATQIEELLPGIINR--KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL 247 (590)
Q Consensus 170 ~~~~~g~~~~a~~~~e~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~ 247 (590)
+-.-.|+-..|.+.-.++-+....| +-++..-+..-.-.|+++.|.+-|+-|+ .+|..-..-+...++..+..|.
T Consensus 93 iAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl---~dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 93 IAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML---DDPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh---cChHHHHHhHHHHHHHHHhccc
Confidence 3345677778887777665443334 4455566778889999999999999999 5665222222222233467888
Q ss_pred HHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh---CCCCh---HHHH
Q 007775 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---NMRDL---SILY 321 (590)
Q Consensus 248 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~p~~~---~~~~ 321 (590)
.+.|..+.+++....|.-. .++...-...+..|+ ++.|+++.+... .. .++-. .+..
T Consensus 170 reaAr~yAe~Aa~~Ap~l~-----WA~~AtLe~r~~~gd-----------Wd~AlkLvd~~~-~~~vie~~~aeR~rAvL 232 (531)
T COG3898 170 REAARHYAERAAEKAPQLP-----WAARATLEARCAAGD-----------WDGALKLVDAQR-AAKVIEKDVAERSRAVL 232 (531)
T ss_pred HHHHHHHHHHHHhhccCCc-----hHHHHHHHHHHhcCC-----------hHHHHHHHHHHH-HHHhhchhhHHHHHHHH
Confidence 9899999999999998766 466655566778888 999999987654 22 22211 1111
Q ss_pred HHHHH-HHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Q 007775 322 RLSLE-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (590)
Q Consensus 322 ~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~ 400 (590)
.-+.. -....+...|...-.+++++.|+.. .+-..-+..+++.|+..++-.+++.+.+..|+| .++.+|..
T Consensus 233 LtAkA~s~ldadp~~Ar~~A~~a~KL~pdlv-Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP-------~ia~lY~~ 304 (531)
T COG3898 233 LTAKAMSLLDADPASARDDALEANKLAPDLV-PAAVVAARALFRDGNLRKGSKILETAWKAEPHP-------DIALLYVR 304 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccc-hHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-------HHHHHHHH
Confidence 11211 1233568889999999999999988 888899999999999999999999999999866 34455555
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
..--+.++.-++++-++. ...|++.+.....+..-+..|++..|..--+.+....|. ..+
T Consensus 305 ar~gdta~dRlkRa~~L~-------------------slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~ 364 (531)
T COG3898 305 ARSGDTALDRLKRAKKLE-------------------SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESA 364 (531)
T ss_pred hcCCCcHHHHHHHHHHHH-------------------hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhH
Confidence 555566777777776664 223788899999999999999999999999999888886 456
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHhcc
Q 007775 481 CHATGVLYEKK-GLYKEAIKAFRSALNI 507 (590)
Q Consensus 481 ~~~l~~~~~~~-g~~~~A~~~~~~al~~ 507 (590)
+..++.+-... |+-.++..++-++++.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77788887665 9999999999999863
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.06 E-value=4e-10 Score=79.84 Aligned_cols=66 Identities=30% Similarity=0.390 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHhcccc
Q 007775 512 VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQG-TQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g-~~~~~~~A~~~~~~al~l~p 582 (590)
+.+|..+|.++...|+++ +|+..|+++++.+|+++.+|+++|.++..+| + +++|++.|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~--~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYE--EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD---YEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHH--HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCc
Confidence 455566666666666655 6666666666666666666666666666666 5 6666666666666655
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.05 E-value=1e-08 Score=84.79 Aligned_cols=118 Identities=20% Similarity=0.123 Sum_probs=103.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCC
Q 007775 455 INLSQWHDAEICLSKSEAISSYS---ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQ 528 (590)
Q Consensus 455 ~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~ 528 (590)
...++...+...+++....+|++ ..+.+.+|.++...|++++|...|+.++...|+. ..+...++.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 35889999999999999999998 5568889999999999999999999999987665 45788999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 007775 529 SNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAA 578 (590)
Q Consensus 529 ~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al 578 (590)
+ +|+..++. +...+-.+.++..+|.++...|+ +++|+..|++|+
T Consensus 102 d--~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 D--EALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred H--HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 9 99999966 34445567788899999999999 999999999985
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.05 E-value=2.2e-09 Score=82.37 Aligned_cols=99 Identities=23% Similarity=0.321 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHc
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKL 525 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 525 (590)
++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhhcCC
Q 007775 526 SDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 526 g~~~l~~A~~~~~~a~~~~p~ 546 (590)
|+++ +|...+.++++..|.
T Consensus 82 ~~~~--~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYE--EALEAYEKALELDPN 100 (100)
T ss_pred HhHH--HHHHHHHHHHccCCC
Confidence 9998 999999999988773
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.05 E-value=1.6e-08 Score=93.96 Aligned_cols=208 Identities=18% Similarity=0.161 Sum_probs=144.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCC----CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc
Q 007775 355 WLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (590)
Q Consensus 355 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 430 (590)
+...|..|...|++++|...|.++.+..... .....+...+.++.+. ++++|+.+|++++.+....
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--------- 107 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--------- 107 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc---------
Confidence 3344566777888999999988887654211 2244566666776555 9999999999999986321
Q ss_pred ccccccccccchHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 431 FYKGSANHARSLELEVWLDLAFIYINL-SQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
+....-..++..+|.+|... |++++|+++|+++....... ...+..+|.++...|+|++|++.|++
T Consensus 108 -------G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 108 -------GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp -------T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -------CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 22234467899999999999 99999999999999874322 44578899999999999999999999
Q ss_pred HhccCCCC-------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH-----HHHHHHHHHHHHhCCCCchHHHH
Q 007775 504 ALNIDPAH-------VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS-----SAWYNLGLFYKSQGTQSSKLEAA 571 (590)
Q Consensus 504 al~~~p~~-------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~g~~~~~~~A~ 571 (590)
.....-++ ...+...+.++...|+.. .|...+++....+|... .....|-.++. .|+.+.+++|+
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v--~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av 257 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV--AARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAV 257 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH--HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHC
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence 87643221 134567788899999988 99999999999988542 23333444433 34444588888
Q ss_pred HHHHHHhcccc
Q 007775 572 ECFEAAASLEE 582 (590)
Q Consensus 572 ~~~~~al~l~p 582 (590)
.-|.+...++|
T Consensus 258 ~~~d~~~~ld~ 268 (282)
T PF14938_consen 258 AEYDSISRLDN 268 (282)
T ss_dssp HHHTTSS---H
T ss_pred HHHcccCccHH
Confidence 88887776665
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.04 E-value=8.9e-09 Score=102.62 Aligned_cols=134 Identities=13% Similarity=0.024 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHhcc--CCCChh
Q 007775 447 WLDLAFIYINLSQ---WHDAEICLSKSEAISSYSASKCHATGVLYEKKG--------LYKEAIKAFRSALNI--DPAHVP 513 (590)
Q Consensus 447 ~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~ 513 (590)
++..|..+...++ ...|+.+|+++++++|+++.++..++.++.... +...+.+..++++.+ +|.++.
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~ 421 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR 421 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence 3445555555444 779999999999999999999998888775542 345666667776664 677788
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 514 SLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 514 ~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
++..+|..+...|+++ +|...+++++.++| +..+|..+|.++...|+ +++|++.|++|+.++|.+|.
T Consensus 422 ~~~ala~~~~~~g~~~--~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 422 IYEILAVQALVKGKTD--EAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCch
Confidence 8999999999999999 99999999999999 58899999999999999 99999999999999999884
No 154
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.1e-07 Score=78.38 Aligned_cols=199 Identities=17% Similarity=0.094 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH-cccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 007775 319 ILYRLSLEYAEQRKLNAAHYYAKMLL-KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~ 397 (590)
+...++.....-++.++-+.-..+.+ .....+.......-+.++...|++++|++..... .+.++...-..+
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI 146 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHH
Confidence 33344444444444444444333332 2222222134445567778888888888877662 345555566777
Q ss_pred HHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 007775 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN----LSQWHDAEICLSKSEAI 473 (590)
Q Consensus 398 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 473 (590)
+.+..+++-|.+.++++.+.+. -.++..||..+.. .+++.+|.-+|++.-+.
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ide------------------------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k 202 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDE------------------------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccch------------------------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc
Confidence 8888888888888888887752 2344444444443 45688888888888887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHH
Q 007775 474 SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSS 549 (590)
Q Consensus 474 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~ 549 (590)
.|..+...+..+.|+..+|+|++|...++.++..++++++++.++..+-...|... +--.+.+.+....+|..+.
T Consensus 203 ~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~-~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 203 TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA-EVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHhcCCcchH
Confidence 88888888888899999999999999999999888888988888888888888875 2344555666667777654
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.03 E-value=1.9e-08 Score=83.23 Aligned_cols=120 Identities=22% Similarity=0.168 Sum_probs=55.6
Q ss_pred cCChHHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchH
Q 007775 365 QKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLE 443 (590)
Q Consensus 365 ~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (590)
.++...+...++......|.. ....+...+|.++...|++++|...|+.++...|+. ...
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-------------------~l~ 84 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-------------------ELK 84 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-------------------HHH
Confidence 344444444444444444411 112334445555555555555555555555443110 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSA 504 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 504 (590)
..+...++.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 33445555555555555555555533 1222223444555555555555555555555544
No 156
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=4.6e-07 Score=89.78 Aligned_cols=318 Identities=14% Similarity=0.078 Sum_probs=183.9
Q ss_pred HHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHH------------HHhhcCCCCCCChHHHHHH
Q 007775 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLL------------RTLLSGSEDPKCLPALLIA 237 (590)
Q Consensus 170 ~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------~~~l~~~~~p~~~~~~~~~ 237 (590)
.|..-|+.+.|.+...-+ ....+|-++|....+..+.+-|.-++ +++. .+|+...+-...
T Consensus 737 fyvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~---q~~~e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ---QNGEEDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH---hCCcchhhHHHH
Confidence 355678888887766543 34567888888888777776665443 3333 233322222111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh
Q 007775 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (590)
Q Consensus 238 a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~ 317 (590)
..+ ..|..++|..+|++.-. +-.+-..|..+|. +++|.++-+.-- .+ .--
T Consensus 809 LAi---eLgMlEeA~~lYr~ckR-------------~DLlNKlyQs~g~-----------w~eA~eiAE~~D-Ri--HLr 858 (1416)
T KOG3617|consen 809 LAI---ELGMLEEALILYRQCKR-------------YDLLNKLYQSQGM-----------WSEAFEIAETKD-RI--HLR 858 (1416)
T ss_pred HHH---HHhhHHHHHHHHHHHHH-------------HHHHHHHHHhccc-----------HHHHHHHHhhcc-ce--ehh
Confidence 112 55677788887776533 3344556777777 888877654322 11 123
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH----------cccCC----------CcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLL----------KLEGG----------SNLKGWLLMARILSAQKRYEDAETILNA 377 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l----------~~~p~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 377 (590)
..+++.|..+...++.+.|+++|+++- ..+|. +. ..|.+-|..+...|+.+.|+.+|..
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~-~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE-SLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch-HHHHHHHHHHhcccchHHHHHHHHH
Confidence 567888888888888999998888752 22222 23 4566666666677777777777666
Q ss_pred HHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhc
Q 007775 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINL 457 (590)
Q Consensus 378 a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 457 (590)
+-+ |+.+.++.+-+|+.++|-.+.++ ..+..+.+.+|..|...
T Consensus 938 A~D----------~fs~VrI~C~qGk~~kAa~iA~e---------------------------sgd~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 938 AKD----------YFSMVRIKCIQGKTDKAARIAEE---------------------------SGDKAACYHLARMYEND 980 (1416)
T ss_pred hhh----------hhhheeeEeeccCchHHHHHHHh---------------------------cccHHHHHHHHHHhhhh
Confidence 432 44566666667777776655442 34466788899999999
Q ss_pred CChHHHHHHHHHHHhcC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc
Q 007775 458 SQWHDAEICLSKSEAIS------SYS--ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS 529 (590)
Q Consensus 458 g~~~~A~~~~~~a~~~~------p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 529 (590)
|++.+|+..|.++-... ..+ .+-+.+++.. ....+.-.|..+|++.-- ....-..+|.+.|.+.
T Consensus 981 g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~-s~~~d~v~aArYyEe~g~-------~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM-SGGSDLVSAARYYEELGG-------YAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh-cCchhHHHHHHHHHHcch-------hhhHHHHHHHhhcchH
Confidence 99999999888774432 111 1111111111 111223333344443210 1111223344444444
Q ss_pred hHHHHHHHHH----------HHhhcC-CCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 007775 530 NAVIRSFLMA----------ALRLDG-MNSSAWYNLGLFYKSQGTQSSKLEAAECFEA 576 (590)
Q Consensus 530 l~~A~~~~~~----------a~~~~p-~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~ 576 (590)
+|+++.-+ +-.++| .+|......+..+....+ |++|...+-.
T Consensus 1053 --kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q---yekAV~lL~~ 1105 (1416)
T KOG3617|consen 1053 --KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ---YEKAVNLLCL 1105 (1416)
T ss_pred --HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH---HHHHHHHHHH
Confidence 44433211 112344 357778888899999999 9999876443
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9e-09 Score=91.11 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCChhhHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKG---LYKEAIKAFRSALNIDPAHVPSLIS 517 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~ 517 (590)
|.+++-|..||.+|+..|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+++++..+|+++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 7889999999999999999999999999999999999999999999987654 4678999999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 518 TAVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 518 l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
||..++..|++. +|...++..+...|.+.
T Consensus 233 LA~~afe~g~~~--~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYA--EAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHH--HHHHHHHHHHhcCCCCC
Confidence 999999999999 99999999999887654
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.00 E-value=6.2e-10 Score=77.69 Aligned_cols=64 Identities=31% Similarity=0.371 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 517 STAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 517 ~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
.+|..+...|+++ +|+..|+++++.+|+++.+|+.+|.++..+|+ +++|+..|+++++++|++|
T Consensus 2 ~~a~~~~~~g~~~--~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYD--EAIAAFEQALKQDPDNPEAWYLLGRILYQQGR---YDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHH--HHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCCC
Confidence 3556666666666 66666666666666666666666666666666 6666666666666666654
No 159
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.99 E-value=1e-06 Score=81.00 Aligned_cols=223 Identities=26% Similarity=0.250 Sum_probs=131.6
Q ss_pred ccCHHHHHHHHHHHHcccCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHh--ccCCCCchHHHHHHHHHHHHhcCHh
Q 007775 330 QRKLNAAHYYAKMLLKLEGGS--NLKGWLLMARILSAQKRYEDAETILNAALD--QTGKWEQGELLRTKAKVQLVQGQLK 405 (590)
Q Consensus 330 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~la~~~~~~g~~~ 405 (590)
.+.+..+...+...+...+.. . ......+..+...+++..+...+..... ..+ .....+...+..+...+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLA-GLLLLLALALLKLGRLEEALELLEKALELELLP--NLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc--chHHHHHHHHHHHHHHhhHH
Confidence 345555555555555555542 3 4555666666666666666666666654 233 44555566666666666666
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHH-HHHhcCChHHHHHHHHHHHhcCC---CCHHHH
Q 007775 406 GAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAF-IYINLSQWHDAEICLSKSEAISS---YSASKC 481 (590)
Q Consensus 406 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~ 481 (590)
.++..+..++...+ .........+. ++...|+++.|...+.+++...| .....+
T Consensus 113 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 113 EALELLEKALALDP----------------------DPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred HHHHHHHHHHcCCC----------------------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 66666666665432 11122222233 56666666666666666665554 234444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007775 482 HATGVLYEKKGLYKEAIKAFRSALNIDPA-HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS 560 (590)
Q Consensus 482 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 560 (590)
...+..+...+++++|+..+.+++...+. ....+..++..+...+++. +|...+..++...|.....+..++..+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE--EALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH--HHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 45555556666666666666666666666 4666666666666666665 66666666666666655556666666665
Q ss_pred hCCCCchHHHHHHHHHHhcccc
Q 007775 561 QGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 561 ~g~~~~~~~A~~~~~~al~l~p 582 (590)
.|. ++++...+.+++...|
T Consensus 249 ~~~---~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 249 LGR---YEEALEALEKALELDP 267 (291)
T ss_pred cCC---HHHHHHHHHHHHHhCc
Confidence 566 6666666666666555
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.99 E-value=2.3e-09 Score=79.23 Aligned_cols=83 Identities=25% Similarity=0.290 Sum_probs=59.4
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
+|++++|+..++++++..|.+ + +...+..+|.++.+.|++++|+.++++ .+.+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~-------------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~ 60 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN-------------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDI 60 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT-------------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC-------------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHH
Confidence 577778888888888776421 2 456677778888888888888888877 6667766777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSA 504 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~a 504 (590)
.+.+|.++.++|++++|++.|+++
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhcC
Confidence 777788888888888888777654
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.98 E-value=1.8e-09 Score=75.29 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=33.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH 511 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 511 (590)
+|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555544
No 162
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.4e-08 Score=93.21 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS---------------ASKCHATGVLYEKKGLYKEAIKAFRSALNID 508 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 508 (590)
+.....-|+.|++.|+|..|...|++++..-+.. ..++.+++.|+.++++|.+|+....++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3455667899999999999999999988754321 2358899999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHH-HHHHHHHhccccC
Q 007775 509 PAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEA-AECFEAAASLEET 583 (590)
Q Consensus 509 p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A-~~~~~~al~l~p~ 583 (590)
|+|+.+++..|.++..+|+++ .|+..|+++++++|.|..+...+..+-.+..+ +.+. .+.|.+.+..-+.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~--~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~---~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYD--LARDDFQKALKLEPSNKAARAELIKLKQKIRE---YEEKEKKMYANMFAKLAE 358 (397)
T ss_pred CCchhHHHHHHHHHHhhccHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccc
Confidence 999999999999999999999 99999999999999999999999998888776 5544 7888888876553
No 163
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-08 Score=92.90 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 523 (590)
..++++++.++.++++|.+|+....+++.+.|+|..+++..|.++...|+++.|+..|++++++.|+|-.+...+..+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HcCCCchHHHHHHHHHHHhhcC
Q 007775 524 KLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~~p 545 (590)
+..++. +...+.|.+++..-+
T Consensus 337 k~~~~~-~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYE-EKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHH-HHHHHHHHHHhhccc
Confidence 887776 456788888877544
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=98.94 E-value=1.8e-08 Score=94.96 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=104.1
Q ss_pred ChHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcC
Q 007775 459 QWHDAEICLSKSE---AISSYSASKCHATGVLYEKK---------GLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLS 526 (590)
Q Consensus 459 ~~~~A~~~~~~a~---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 526 (590)
..+.|..+|.+++ .++|+...++..++.|+... ....+|.+..+++++++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3457888899999 88888888888888887654 23567888888999999999999999999999888
Q ss_pred CCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 527 DQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 527 ~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
+++ .|...|++++.++|+.+.+|+..|.+....|+ .++|.+.++++++++|.-
T Consensus 353 ~~~--~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 353 QAK--VSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRR 405 (458)
T ss_pred chh--hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchh
Confidence 888 99999999999999999999999999999999 999999999999998853
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=1.9e-09 Score=79.59 Aligned_cols=80 Identities=26% Similarity=0.325 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchH
Q 007775 491 KGLYKEAIKAFRSALNIDPA--HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKL 568 (590)
Q Consensus 491 ~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~ 568 (590)
+|++++|+..++++++..|. +...++.+|.++.+.|+++ +|+.++++ .+.+|.++..++.+|.++..+|+ ++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~--~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~---y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYE--EAIELLQK-LKLDPSNPDIHYLLARCLLKLGK---YE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHH--HHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHH--HHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC---HH
Confidence 35555555555555555553 2344455555555555555 55555555 44555555555555555555555 55
Q ss_pred HHHHHHHH
Q 007775 569 EAAECFEA 576 (590)
Q Consensus 569 ~A~~~~~~ 576 (590)
+|++.|++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555554
No 166
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.92 E-value=4.9e-05 Score=72.49 Aligned_cols=413 Identities=11% Similarity=0.002 Sum_probs=229.8
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHH
Q 007775 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (590)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~ 233 (590)
++..|.|...|+.|..-+... -++++.+.+|+.+...|..+.+|...+...+...+|+....+|.+++....+ ...
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn---lDL 88 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN---LDL 88 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh---HhH
Confidence 455688999999998877666 8999999999999999999999999999999999999999999999942222 333
Q ss_pred HHHHHHHHhcCCCCHHHH----HHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHH
Q 007775 234 LLIASKICGEYPDLAEEG----ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (590)
Q Consensus 234 ~~~~a~~~~~~~~~~~~A----~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 309 (590)
+...........+....+ ...|+-++....-+. .....|...+..+ ..........+.. ..+.-...|++++
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di--~s~siW~eYi~FL-~~vea~gk~ee~Q-RI~~vRriYqral 164 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDI--KSYSIWDEYINFL-EGVEAVGKYEENQ-RITAVRRIYQRAL 164 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCc--ccchhHHHHHHHH-HcccccccHHHHH-HHHHHHHHHHHHh
Confidence 322211111122222122 233333333322111 1112343333222 1111111122222 3677777888887
Q ss_pred HhhCCCChH-HHHH-----------HH--HHHHHccCHHHHHHHHHHHHcc-------cCC----Cc------HHHHHHH
Q 007775 310 RSTNMRDLS-ILYR-----------LS--LEYAEQRKLNAAHYYAKMLLKL-------EGG----SN------LKGWLLM 358 (590)
Q Consensus 310 ~~~~p~~~~-~~~~-----------la--~~~~~~g~~~~A~~~~~~~l~~-------~p~----~~------~~~~~~l 358 (590)
..--.+.+ .|.. .| .+--....|..|...+++.... +|. .. +..|.++
T Consensus 165 -~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 165 -VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred -cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 44333321 1110 11 1122334455565555554321 111 00 0122222
Q ss_pred HHHHHHcC------Ch--HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcC--------------HhHHHHHHHHHHH
Q 007775 359 ARILSAQK------RY--EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ--------------LKGAVETYTHLLA 416 (590)
Q Consensus 359 a~~~~~~g------~~--~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~ 416 (590)
...-...+ .. ..-.-.+++++..-+ -.+++|+..+..+...++ .+++..+|++++.
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~--~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLG--YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 22211111 00 111122444444443 344555544444444443 4566666666655
Q ss_pred HHhhhhhccccccccccc----------------cccc-ccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH
Q 007775 417 ALQVQTKTFSSDKRFYKG----------------SANH-ARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS 479 (590)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 479 (590)
..-.....+..+....++ .... ....-.-+|..+.+.-.+..-...|...|.++-+..-....
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 432111100000000000 0000 00111235666666666666688888888888764433334
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh--cCC-CHHHHHHHH
Q 007775 480 KCHATGVL-YEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL--DGM-NSSAWYNLG 555 (590)
Q Consensus 480 ~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~--~p~-~~~~~~~l~ 555 (590)
++..-|.+ |...++.+-|...|+-.++..++.+..-......+...++-. .|..+|++++.. .|+ ...+|..+-
T Consensus 402 VfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~--N~R~LFEr~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 402 VFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDN--NARALFERVLTSVLSADKSKEIWDRML 479 (656)
T ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcch--hHHHHHHHHHhccCChhhhHHHHHHHH
Confidence 44333333 455789999999999999999999998888889999999988 999999999986 333 346788777
Q ss_pred HHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 556 LFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 556 ~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
..-..-|+ ...+++.=++-....|
T Consensus 480 ~yES~vGd---L~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 480 EYESNVGD---LNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhccc---HHHHHHHHHHHHHhcc
Confidence 77778888 8888887777666666
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=98.92 E-value=7e-09 Score=83.54 Aligned_cols=106 Identities=9% Similarity=0.063 Sum_probs=93.6
Q ss_pred cchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHH
Q 007775 440 RSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTA 519 (590)
Q Consensus 440 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 519 (590)
.+...+..+..|.-+...|++++|...|+-....+|.++..|..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34556778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 520 VVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 520 ~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
.++..+|+.. .|+..|..++. .|.+.
T Consensus 113 qC~l~l~~~~--~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 113 QCQLLMRKAA--KARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHhCCHH--HHHHHHHHHHh-CcchH
Confidence 9999999988 99999998888 45543
No 168
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.91 E-value=2e-06 Score=79.06 Aligned_cols=224 Identities=25% Similarity=0.244 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHc--ccCCCcHHHHHHHHHHHHHcCChHHHHH
Q 007775 298 QAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMARILSAQKRYEDAET 373 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~la~~~~~~g~~~~A~~ 373 (590)
+..+...+.... ...+. ........+..+...+++..+...+..... ..+... ..+...+..+...+++..+..
T Consensus 39 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 39 LAEALELLEEAL-ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-EALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred HHHHHHHHHHHH-hcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-HHHHHHHHHHHHHhhHHHHHH
Confidence 667777788777 66665 367888899999999999999999999987 667766 889999999999999999999
Q ss_pred HHHHHHhccCCCCchHHHHHHHH-HHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHH
Q 007775 374 ILNAALDQTGKWEQGELLRTKAK-VQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAF 452 (590)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 452 (590)
.+..+....+ .........+. ++...|++++|...+.+++...|. ...........+.
T Consensus 117 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 175 (291)
T COG0457 117 LLEKALALDP--DPDLAEALLALGALYELGDYEEALELYEKALELDPE-------------------LNELAEALLALGA 175 (291)
T ss_pred HHHHHHcCCC--CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------------ccchHHHHHHhhh
Confidence 9999999877 33333444555 899999999999999999775421 0133556666677
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchH
Q 007775 453 IYINLSQWHDAEICLSKSEAISSY-SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNA 531 (590)
Q Consensus 453 ~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~ 531 (590)
.+...++++.|+..+.+++...+. ....+..++..+...+++++|+..+..++...|.....+..++..+...+..+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 253 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE-- 253 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH--
Confidence 788999999999999999999999 69999999999999999999999999999999987778888888888777777
Q ss_pred HHHHHHHHHHhhcCC
Q 007775 532 VIRSFLMAALRLDGM 546 (590)
Q Consensus 532 ~A~~~~~~a~~~~p~ 546 (590)
++...+.+++...|.
T Consensus 254 ~~~~~~~~~~~~~~~ 268 (291)
T COG0457 254 EALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999999987
No 169
>PRK11906 transcriptional regulator; Provisional
Probab=98.91 E-value=9.3e-08 Score=90.22 Aligned_cols=172 Identities=14% Similarity=0.093 Sum_probs=131.9
Q ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHH---HHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHH
Q 007775 234 LLIASKICGE--YPDLAEEGATFASRAL---ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (590)
Q Consensus 234 ~~~~a~~~~~--~~~~~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 308 (590)
.+..+..... .....+.|+.+|.+++ .++|... .+|..++.|+....-..... ......+|.+.-+++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a-----~a~~~lA~~h~~~~~~g~~~--~~~~~~~a~~~A~rA 330 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT-----ECYCLLAECHMSLALHGKSE--LELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH-----HHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHH
Confidence 3445543322 2334567889999999 7777666 57888887776653322222 333377899999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCch
Q 007775 309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (590)
Q Consensus 309 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 388 (590)
+ .++|.|+.++..+|.+....++++.|...|++++.++|+.. .+|+..|.+....|+.++|.+.++++++++|.....
T Consensus 331 v-eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A-~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 331 S-DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA-SLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred H-hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 9 99999999999999999999999999999999999999999 999999999999999999999999999999943333
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 007775 389 ELLRTKAKVQLVQGQLKGAVETYTHLL 415 (590)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~~l 415 (590)
.+.......|+ ....++|+..|-+-.
T Consensus 409 ~~~~~~~~~~~-~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 409 VVIKECVDMYV-PNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHc-CCchhhhHHHHhhcc
Confidence 33333333454 345778888776543
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=98.91 E-value=4.6e-08 Score=78.91 Aligned_cols=111 Identities=15% Similarity=0.065 Sum_probs=101.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC
Q 007775 468 SKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN 547 (590)
Q Consensus 468 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~ 547 (590)
..+..+.++..+..+..|.-++.+|++++|...|+-....+|.++..|..||.++..+++++ +|+..|..+..+++++
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~--~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQ--KACDLYAVAFTLLKND 104 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcccCC
Confidence 34455666777888999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 548 SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
|...+..|.++..+|+ .+.|+.+|+.+++ .|.+
T Consensus 105 p~p~f~agqC~l~l~~---~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 105 YRPVFFTGQCQLLMRK---AAKARQCFELVNE-RTED 137 (165)
T ss_pred CCccchHHHHHHHhCC---HHHHHHHHHHHHh-Ccch
Confidence 9999999999999999 9999999999998 3544
No 171
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=1.9e-05 Score=77.74 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHH-------
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLI------- 516 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------- 516 (590)
.++...++.-+...|+...|...|-++-. |..-...|...+-|++|...-+. ....+..-+.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriakt---egg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHHHHHHh
Confidence 45677778888888888888877766532 22233445555666666544332 1111111100
Q ss_pred ----HHHHHHHHcCCCchHHHHHHH------HHHHh-----hcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 517 ----STAVVLRKLSDQSNAVIRSFL------MAALR-----LDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 517 ----~l~~~~~~~g~~~l~~A~~~~------~~a~~-----~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
.-..++.+.|-.. +|+... +-++. .....+.++..++..+...|+ +++|-+.|-.+++++
T Consensus 951 iggdaavkllnk~gll~--~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk---~edaskhyveaikln 1025 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLE--AAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGK---FEDASKHYVEAIKLN 1025 (1636)
T ss_pred hCcHHHHHHHHhhhhHH--HHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccc---hhhhhHhhHHHhhcc
Confidence 0112223333333 333321 11111 122346778889999999999 999999999999887
Q ss_pred cC
Q 007775 582 ET 583 (590)
Q Consensus 582 p~ 583 (590)
.-
T Consensus 1026 ty 1027 (1636)
T KOG3616|consen 1026 TY 1027 (1636)
T ss_pred cc
Confidence 53
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.87 E-value=8.6e-08 Score=95.66 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 007775 462 DAEICLSKSEAI--SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMA 539 (590)
Q Consensus 462 ~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~ 539 (590)
.+....++++.. .|.++.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|+.+ +|...|++
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~--eA~~~~~~ 478 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNR--LAADAYST 478 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHH--HHHHHHHH
Confidence 333444444442 4455566666666666666666666666666666663 556666666666666666 66666666
Q ss_pred HHhhcCCCHH
Q 007775 540 ALRLDGMNSS 549 (590)
Q Consensus 540 a~~~~p~~~~ 549 (590)
|+.++|.++.
T Consensus 479 A~~L~P~~pt 488 (517)
T PRK10153 479 AFNLRPGENT 488 (517)
T ss_pred HHhcCCCCch
Confidence 6666666553
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.87 E-value=5.9e-08 Score=87.71 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=86.1
Q ss_pred HHHHHHHHHHH-HhcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHH
Q 007775 444 LEVWLDLAFIY-INLSQWHDAEICLSKSEAISSYS---ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLI 516 (590)
Q Consensus 444 ~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 516 (590)
...++..+..+ ...|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45666666655 56788999999999999988887 5788899999999999999999999988877764 67788
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 517 STAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 517 ~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
.+|.++...|+++ +|...|+++++..|++..+
T Consensus 222 klg~~~~~~g~~~--~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTA--KAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHHCcCCHHH
Confidence 8888888888888 8898888888888887654
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.87 E-value=3e-08 Score=89.55 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC---HH
Q 007775 477 SASKCHATGVLY-EKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN---SS 549 (590)
Q Consensus 477 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~---~~ 549 (590)
+...++..+..+ ...|++++|+..|++.++..|++ +.+++.+|.+|...|+++ +|+..|++++...|++ ++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~--~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKD--DAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCCCCcchhH
Confidence 345667777765 66799999999999999999998 579999999999999999 9999999999988874 78
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 550 AWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 550 ~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
+++.+|.++...|+ +++|...|+++++..|+++.
T Consensus 219 Al~klg~~~~~~g~---~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGD---TAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCCHH
Confidence 89999999999999 99999999999999998763
No 175
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=1e-06 Score=73.44 Aligned_cols=195 Identities=17% Similarity=0.084 Sum_probs=131.3
Q ss_pred hhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccC
Q 007775 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (590)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 348 (590)
.++..++..|..|-..|- ..-|.--|.+++ .+.|.-+.++..+|..+...|+++.|.+.|...++++|
T Consensus 63 eRA~l~fERGvlYDSlGL-----------~~LAR~DftQaL-ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 63 ERAQLLFERGVLYDSLGL-----------RALARNDFSQAL-AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred HHHHHHHHhcchhhhhhH-----------HHHHhhhhhhhh-hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 344567777888878887 788888889999 99999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCch--HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccc
Q 007775 349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG--ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (590)
Q Consensus 349 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 426 (590)
... .+..+.|..+.--|++.-|.+-+.+-.+.+| .++ ..|. .+-...-++.+|...+.+-.+..
T Consensus 131 ~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~--~DPfR~LWL---Yl~E~k~dP~~A~tnL~qR~~~~-------- 196 (297)
T COG4785 131 TYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDP--NDPFRSLWL---YLNEQKLDPKQAKTNLKQRAEKS-------- 196 (297)
T ss_pred cch-HHHhccceeeeecCchHhhHHHHHHHHhcCC--CChHHHHHH---HHHHhhCCHHHHHHHHHHHHHhc--------
Confidence 988 8888999998999999999999988888887 443 2222 22223345666665443322221
Q ss_pred ccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHH
Q 007775 427 SDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS-------ASKCHATGVLYEKKGLYKEAIK 499 (590)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~ 499 (590)
.....-|+.. ..| .|+..+ ...++++.....++ .++++.+|..+...|+.++|..
T Consensus 197 --------------d~e~WG~~iV-~~y--LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 197 --------------DKEQWGWNIV-EFY--LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred --------------cHhhhhHHHH-HHH--HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 1111222221 111 222221 12334443333333 3557777777777777777777
Q ss_pred HHHHHhcc
Q 007775 500 AFRSALNI 507 (590)
Q Consensus 500 ~~~~al~~ 507 (590)
.|+-++..
T Consensus 259 LfKLaian 266 (297)
T COG4785 259 LFKLAVAN 266 (297)
T ss_pred HHHHHHHH
Confidence 77776653
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.82 E-value=2.7e-05 Score=71.06 Aligned_cols=285 Identities=14% Similarity=0.037 Sum_probs=195.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHH----H
Q 007775 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL----Y 321 (590)
Q Consensus 246 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~----~ 321 (590)
|+...|.+.-.+.-+....+.+. .++..-+..-...|+ ++.|.+-|+.++ ++++.. -
T Consensus 98 Gda~lARkmt~~~~~llssDqep---LIhlLeAQaal~eG~-----------~~~Ar~kfeAMl-----~dPEtRllGLR 158 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEP---LIHLLEAQAALLEGD-----------YEDARKKFEAML-----DDPETRLLGLR 158 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHhcCc-----------hHHHHHHHHHHh-----cChHHHHHhHH
Confidence 44556666666655443333221 345555566666777 888888888877 344332 1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc------hHHHHHHH
Q 007775 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------GELLRTKA 395 (590)
Q Consensus 322 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~la 395 (590)
.|-.-....|+.+.|..+-+++-...|.-. .++.......+..|+++.|+++.+......-...+ ...+...+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~-WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLP-WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 222233467888888888888888888877 77777777888888888888888776554321111 11111222
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007775 396 KVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS 475 (590)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 475 (590)
... -..+...|...-.++.++. |+....-..-+..+++.|+..++-.+++.+.+..|
T Consensus 238 ~s~-ldadp~~Ar~~A~~a~KL~----------------------pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 238 MSL-LDADPASARDDALEANKLA----------------------PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHH-hcCChHHHHHHHHHHhhcC----------------------CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 222 2245677787777787776 55566777788999999999999999999999887
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH---HHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHH
Q 007775 476 YSASKCHATGVLYEKKGLYKEAIKAFR---SALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~A~~~~~---~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~ 552 (590)
. |.++. ..++.+.|+ .++.-++ +...+.|++.+.....+..-...|++. .|..-.+.+....|.. .++.
T Consensus 295 H-P~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~--~ARa~Aeaa~r~~pre-s~~l 366 (531)
T COG3898 295 H-PDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS--AARAKAEAAAREAPRE-SAYL 366 (531)
T ss_pred C-hHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH--HHHHHHHHHhhhCchh-hHHH
Confidence 4 44332 223344454 3444443 445678999999999999999999998 8999888898888864 5677
Q ss_pred HHHHHHHHh-CCCCchHHHHHHHHHHhccccCCC
Q 007775 553 NLGLFYKSQ-GTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 553 ~l~~~~~~~-g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
.|+.+-... |+ -.++..++-+++.- |.+|
T Consensus 367 LlAdIeeAetGD---qg~vR~wlAqav~A-PrdP 396 (531)
T COG3898 367 LLADIEEAETGD---QGKVRQWLAQAVKA-PRDP 396 (531)
T ss_pred HHHHHHhhccCc---hHHHHHHHHHHhcC-CCCC
Confidence 788888766 99 99999999999874 4444
No 177
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.80 E-value=1.2e-07 Score=90.08 Aligned_cols=122 Identities=18% Similarity=0.117 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCC
Q 007775 448 LDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSD 527 (590)
Q Consensus 448 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 527 (590)
..+...+...++++.|+..+++..+.+|. +...++.++...++-.+|++.+.++++..|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34455666788999999999999888764 667789999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007775 528 QSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAA 577 (590)
Q Consensus 528 ~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~a 577 (590)
++ .|+...+++++..|.+...|+.|+.+|...|+ +++|+..+..+
T Consensus 250 ~~--lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YE--LALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSC 294 (395)
T ss_pred HH--HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcC
Confidence 99 99999999999999999999999999999999 99999887754
No 178
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.80 E-value=1.9e-06 Score=74.80 Aligned_cols=173 Identities=15% Similarity=0.107 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL 467 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 467 (590)
+..++.-|....+.|++++|+..|+.+....|.. |-...+...++.++.+.+++++|+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s-------------------~~~~qa~l~l~yA~Yk~~~y~~A~~~~ 94 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS-------------------PYSEQAQLDLAYAYYKNGEYDLALAYI 94 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------------cccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4455555555555566666666666555554322 333455555566666666666666666
Q ss_pred HHHHhcCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHhccCCCC-----------------hhhHHHHH
Q 007775 468 SKSEAISSYSAS---KCHATGVLYEKK--------GLYKEAIKAFRSALNIDPAH-----------------VPSLISTA 519 (590)
Q Consensus 468 ~~a~~~~p~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~p~~-----------------~~~~~~l~ 519 (590)
++-+...|.++. +++..|.+++.. .-..+|+..|+..+...|+. ...-..+|
T Consensus 95 drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Ia 174 (254)
T COG4105 95 DRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIA 174 (254)
T ss_pred HHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 666665555432 344444444321 11334555555555555554 11223456
Q ss_pred HHHHHcCCCchHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 520 VVLRKLSDQSNAVIRSFLMAALRLDGMN---SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 520 ~~~~~~g~~~l~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
..|.+.|.+. .|..-++.+++..|+. .+++..+..+|..+|- .++|...-.-.-.-.|++
T Consensus 175 ryY~kr~~~~--AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl---~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 175 RYYLKRGAYV--AAINRFEEVLENYPDTSAVREALARLEEAYYALGL---TDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHhcChH--HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC---hHHHHHHHHHHHhcCCCC
Confidence 6666666666 6666677776665543 2455566666777776 666655443333333444
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.80 E-value=1.3e-07 Score=73.64 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---ChhhHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYS---ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA---HVPSLIST 518 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 518 (590)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++.+...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467788888888888888888888888865444 457888888888888888888888888887777 66777778
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHh
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
+.++...|+.+ +|+..+-.++.
T Consensus 82 Al~L~~~gr~~--eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPK--EALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHH--HHHHHHHHHHH
Confidence 88888888888 88888776654
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.78 E-value=1.5e-07 Score=89.64 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccc
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (590)
....+..++...++++.|+.++++..+.+| ++...++.++...++..+|+..+++++...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~p-----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--------------- 230 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDP-----EVAVLLARVYLLMNEEVEAIRLLNEALKEN--------------- 230 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCC-----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---------------
Confidence 344556667778999999999999988776 355678999999999999999999999876
Q ss_pred cccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007775 434 GSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI 507 (590)
Q Consensus 434 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 507 (590)
|.+...+...+..+...++++.|+.+.+++....|.+...|+.|+.+|...|++++|+..++.+--.
T Consensus 231 -------p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 231 -------PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 6668999999999999999999999999999999999999999999999999999999888865444
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.78 E-value=1.6e-08 Score=89.75 Aligned_cols=227 Identities=13% Similarity=-0.018 Sum_probs=166.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~ 399 (590)
+-..|.-|+++|.|++|+.+|.+.+..+|.++ ..+.+.+..|.+.+++..|..-+..++.++. ....+|...+..-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np-V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP-VYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCc-cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999 8999999999999999999999999999987 66888999999999
Q ss_pred HhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH
Q 007775 400 VQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS 479 (590)
Q Consensus 400 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 479 (590)
.+|...+|.+-++.++++.| ...+....++.+ ....++. .. .+..|....
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP----------------------~~~ELkK~~a~i----~Sl~E~~-I~---~KsT~G~~~ 226 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEP----------------------KNIELKKSLARI----NSLRERK-IA---TKSTPGFTP 226 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCc----------------------ccHHHHHHHHHh----cchHhhh-HH---hhcCCCCCc
Confidence 99999999999999999974 334443333322 2222221 11 111122111
Q ss_pred H---------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 480 K---------CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 480 ~---------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
+ .-.-|..+...|.++.++.++.+-+....++.....+ +..+.+.-+++ +++....+++..+|.....
T Consensus 227 A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~--~~~~~~~~~~~~~~s~~~~ 303 (536)
T KOG4648|consen 227 ARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSN--CGIIEEVKKTNPKPTPMPD 303 (536)
T ss_pred cccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcc--hhHHHHHHhcCCCCCcCcc
Confidence 1 1223566677788888888887766554444333333 66677777787 8888777777777765555
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 551 WYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 551 ~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
...-|.+---.|. ..++...++.++.+.|.+.
T Consensus 304 ~s~~~~A~T~~~~---~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 304 TSGPPKAETIAKT---SKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred cCCCchhHHHHhh---hhhcCcchhheeeeccccc
Confidence 5555555566677 7888888999988888764
No 182
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=0.00016 Score=68.04 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--------
Q 007775 443 ELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY-S--ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH-------- 511 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------- 511 (590)
.+.+...+|......+.++.|...|..+.+.... + ...-.++|..|.+.|+-+.-.+.++. +.|.+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHH
Confidence 4667788888888899999999999999886533 2 33456789999998876654444443 34443
Q ss_pred --hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC------CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 512 --VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM------NSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 512 --~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
..+++..|...+.++++. ||...+.+.++.... ..-.+..||.+....|+ ..++.+...-++++...
T Consensus 443 l~a~~~~v~glfaf~qn~ln--EaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn---~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLN--EAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGN---TVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHHHHHHHhccHH--HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcc---hHHHHhccchHHHHHhc
Confidence 346677788888999988 999999999986521 12345678999999999 99999988888877554
Q ss_pred CCC
Q 007775 584 APV 586 (590)
Q Consensus 584 ~~~ 586 (590)
-|+
T Consensus 518 i~D 520 (629)
T KOG2300|consen 518 IPD 520 (629)
T ss_pred CCC
Confidence 443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.76 E-value=1.9e-07 Score=72.69 Aligned_cols=97 Identities=25% Similarity=0.148 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC---CHHHH
Q 007775 478 ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM---NSSAW 551 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~---~~~~~ 551 (590)
+.+++.+|.++...|+.++|+..|++++...++. ..++..+|..+..+|+++ +|+..+++++...|+ +..+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~d--eA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYD--EALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCCCccccHHHH
Confidence 3578899999999999999999999999876444 568999999999999999 999999999999898 77888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 552 YNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 552 ~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
..++.++...|+ +++|+..+-.++.
T Consensus 79 ~f~Al~L~~~gr---~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGR---PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 889999999999 9999999887764
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.75 E-value=2.9e-08 Score=70.02 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=37.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHH
Q 007775 455 INLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTA 519 (590)
Q Consensus 455 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 519 (590)
+..|++++|+..|++++..+|+++.++..+|.++...|++++|...+++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555666666666666666666666666666666666666666666666666665554444443
No 185
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=0.00043 Score=70.38 Aligned_cols=228 Identities=14% Similarity=0.031 Sum_probs=139.9
Q ss_pred hcCChhHHHHHHHHHhccCCCCChhh-HHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHH
Q 007775 75 LADAPRETIMSYRRALLPCWNLDAET-TAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVA 153 (590)
Q Consensus 75 ~~g~~~~A~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 153 (590)
..+++..|+.-..+.++. .|.+ ++.+.+.+.. .+.|..++|..++ +..
T Consensus 21 d~~qfkkal~~~~kllkk----~Pn~~~a~vLkaLsl----------------------~r~gk~~ea~~~L-----e~~ 69 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK----HPNALYAKVLKALSL----------------------FRLGKGDEALKLL-----EAL 69 (932)
T ss_pred hhHHHHHHHHHHHHHHHH----CCCcHHHHHHHHHHH----------------------HHhcCchhHHHHH-----hhh
Confidence 457788888888888877 2222 3444444432 2334455666443 122
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHH
Q 007775 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (590)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~ 233 (590)
....+.|..+...+..+|...|+++++..+|+++.+..|. .+..+.+-.+|.+.+.|.+=.+.--++. ..-|.++..
T Consensus 70 ~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~Ly--K~~pk~~yy 146 (932)
T KOG2053|consen 70 YGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLY--KNFPKRAYY 146 (932)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcccch
Confidence 2223457788999999999999999999999999999988 8888888888988888765333322222 123343333
Q ss_pred HHHHHHHHhcCCCCH---------HHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHH
Q 007775 234 LLIASKICGEYPDLA---------EEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (590)
Q Consensus 234 ~~~~a~~~~~~~~~~---------~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~ 304 (590)
+.....+..+..... .-|....++.++.. . .-...++... .-.++..+|+ +++|...
T Consensus 147 fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~-g-k~~s~aE~~L-yl~iL~~~~k-----------~~eal~~ 212 (932)
T KOG2053|consen 147 FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK-G-KIESEAEIIL-YLLILELQGK-----------YQEALEF 212 (932)
T ss_pred HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC-C-ccchHHHHHH-HHHHHHhccc-----------HHHHHHH
Confidence 322222222211111 12444455555543 1 1111122222 2245667778 8999999
Q ss_pred HHH-HHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCC
Q 007775 305 LVS-AARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (590)
Q Consensus 305 ~~~-a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 350 (590)
+.. ..+...+.+......-...+...++|.+-.+...+++..++++
T Consensus 213 l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 213 LAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 843 3313344455555566778888999999999999999999886
No 186
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=4.1e-07 Score=75.69 Aligned_cols=167 Identities=18% Similarity=0.120 Sum_probs=129.1
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
..+..++..|..|-..|-+.-|.--|.+++.+. |..+.+++.+|..+...|+++.|.+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~----------------------P~m~~vfNyLG~Yl~~a~~fdaa~e 120 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIR----------------------PDMPEVFNYLGIYLTQAGNFDAAYE 120 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC----------------------CCcHHHHHHHHHHHHhcccchHHHH
Confidence 346677888889999999999999999999997 5668999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh--H--------------HHHHHHH-------
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS--L--------------ISTAVVL------- 522 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~--------------~~l~~~~------- 522 (590)
.|...++++|....+..+.|..+.--|++.-|.+.+.+-.+.+|++|-- | .++..-+
T Consensus 121 aFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~ 200 (297)
T COG4785 121 AFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQ 200 (297)
T ss_pred HhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhh
Confidence 9999999999999999999999999999999999999988888887521 1 1111111
Q ss_pred -------HHcCCCchHHHHHHHHHHHhhcCCC-------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 523 -------RKLSDQSNAVIRSFLMAALRLDGMN-------SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 523 -------~~~g~~~l~~A~~~~~~a~~~~p~~-------~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
.-+|+.. -+..++++..-..++ .++++.||..+...|+ .++|...|+-++.-
T Consensus 201 WG~~iV~~yLgkiS---~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~---~~~A~~LfKLaian 266 (297)
T COG4785 201 WGWNIVEFYLGKIS---EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD---LDEATALFKLAVAN 266 (297)
T ss_pred hhHHHHHHHHhhcc---HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHH
Confidence 1122222 222333333322232 3578899999999999 99999999988753
No 187
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.73 E-value=3.6e-06 Score=73.15 Aligned_cols=174 Identities=17% Similarity=0.066 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHH
Q 007775 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (590)
Q Consensus 317 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~l 394 (590)
+..|+.-|....+.|++++|...|+.+....|..+. .+...++.++.+.+++++|+..+++-+...|...+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n------- 106 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN------- 106 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-------
Confidence 355666666666666666666666666665554321 34555555555556666666666665555552222
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh--------cCChHHHHHH
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN--------LSQWHDAEIC 466 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~ 466 (590)
-.-+++..|.++.. ..-..+|...
T Consensus 107 ------------------------------------------------~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~ 138 (254)
T COG4105 107 ------------------------------------------------ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAA 138 (254)
T ss_pred ------------------------------------------------hhHHHHHHHHHHhccCCccccCHHHHHHHHHH
Confidence 22233333333222 1123567788
Q ss_pred HHHHHhcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcC
Q 007775 467 LSKSEAISSYSASK-----------------CHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLS 526 (590)
Q Consensus 467 ~~~a~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g 526 (590)
|+..+...|++..+ =..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|
T Consensus 139 f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 139 FKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG 218 (254)
T ss_pred HHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC
Confidence 88888888887321 2356889999999999999999999987765 467788889999999
Q ss_pred CCchHHHHHHHHHHHhhc-CCCH
Q 007775 527 DQSNAVIRSFLMAALRLD-GMNS 548 (590)
Q Consensus 527 ~~~l~~A~~~~~~a~~~~-p~~~ 548 (590)
-.+ +|... .+++..+ |+++
T Consensus 219 l~~--~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 219 LTD--EAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred ChH--HHHHH-HHHHHhcCCCCc
Confidence 998 88775 4555544 4443
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.71 E-value=2.9e-08 Score=69.99 Aligned_cols=67 Identities=24% Similarity=0.206 Sum_probs=57.0
Q ss_pred HHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 007775 489 EKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLF 557 (590)
Q Consensus 489 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~ 557 (590)
...|++++|+..|++++..+|++..++..+|.++.+.|+++ +|...+++++..+|+++.++..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYD--EAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HH--HHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999988 99999999999999888777776653
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.71 E-value=6.5e-06 Score=66.98 Aligned_cols=128 Identities=16% Similarity=0.079 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--ChhhHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEA-ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA--HVPSLISTAV 520 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 520 (590)
..-.+.++..+...|++.+|...|++++. +...++..+..++...+..+++..|...+++..+.+|. .++....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 45678899999999999999999999886 56778899999999999999999999999999998875 4778889999
Q ss_pred HHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007775 521 VLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAA 577 (590)
Q Consensus 521 ~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~a 577 (590)
.+...|++. +|+..|+.++...|+ +.+....+..+.++|+ ..+|..-+...
T Consensus 169 ~laa~g~~a--~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr---~~ea~aq~~~v 219 (251)
T COG4700 169 TLAAQGKYA--DAESAFEVAISYYPG-PQARIYYAEMLAKQGR---LREANAQYVAV 219 (251)
T ss_pred HHHhcCCch--hHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc---hhHHHHHHHHH
Confidence 999999999 999999999998885 6778888999999998 77776555443
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.69 E-value=8.5e-08 Score=68.73 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHH
Q 007775 451 AFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIS 517 (590)
Q Consensus 451 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 517 (590)
..+|...+++++|++++++++..+|+++..+..+|.++...|++++|+..++++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3556667777777777777777777777777777777777777777777777777777766554433
No 191
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.68 E-value=1.4e-08 Score=90.19 Aligned_cols=243 Identities=11% Similarity=0.010 Sum_probs=172.4
Q ss_pred HHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHH
Q 007775 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (590)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 354 (590)
-..|+-|+++|+ |++|+.+|.+++ ..+|.++..+.+.+.+|++...+..|..-+..++.++.... .+
T Consensus 101 KE~GN~yFKQgK-----------y~EAIDCYs~~i-a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~-KA 167 (536)
T KOG4648|consen 101 KERGNTYFKQGK-----------YEEAIDCYSTAI-AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV-KA 167 (536)
T ss_pred HHhhhhhhhccc-----------hhHHHHHhhhhh-ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH-HH
Confidence 456788999999 999999999999 99999999999999999999999999999999999998877 99
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccc
Q 007775 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKG 434 (590)
Q Consensus 355 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 434 (590)
|...+..-..+|+..+|.+-++.++++.| .+.++...++.+ ....++.-. .+.-|. +..+...
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP--~~~ELkK~~a~i----~Sl~E~~I~----~KsT~G----~~~A~Q~--- 230 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEP--KNIELKKSLARI----NSLRERKIA----TKSTPG----FTPARQG--- 230 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCc--ccHHHHHHHHHh----cchHhhhHH----hhcCCC----CCccccc---
Confidence 99999999999999999999999999998 554443333332 222222110 011000 0000000
Q ss_pred ccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh
Q 007775 435 SANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS 514 (590)
Q Consensus 435 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 514 (590)
.........-|..+...|.++.++.++.+-+.....+...-.+ +..+.+..++++|+....+++..+|.....
T Consensus 231 ------~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~ 303 (536)
T KOG4648|consen 231 ------MIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPD 303 (536)
T ss_pred ------hhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcc
Confidence 0000112234666778888999998888776665555444333 667777888899998888888877766555
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 007775 515 LISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGL 556 (590)
Q Consensus 515 ~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~ 556 (590)
...-+.+-.-.|... ++...++.++.+.|.+...-..+..
T Consensus 304 ~s~~~~A~T~~~~~~--E~K~~~~T~~~~~P~~~~~~~~~sr 343 (536)
T KOG4648|consen 304 TSGPPKAETIAKTSK--EVKPTKQTAVKVAPAVETPKETETR 343 (536)
T ss_pred cCCCchhHHHHhhhh--hcCcchhheeeeccccccchhhhhh
Confidence 554455545555555 7888888888888876554444433
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=4.3e-07 Score=79.64 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
.+..+.-++..|+|.+|...|...++..|+. +..+.+++.||.+++.+|++++|...|..+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-------------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-------------------TYTPNAYYWLGESLYAQGDYEDAAYIFARV 204 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------cccchhHHHHHHHHHhcccchHHHHHHHHH
Confidence 5677777788888888888888888887654 455778888888888888888888888888
Q ss_pred HhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHH
Q 007775 471 EAISSYS---ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLI 516 (590)
Q Consensus 471 ~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 516 (590)
.+..|++ |++++.+|.+..++|+.++|...|+++++..|+...+..
T Consensus 205 ~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 205 VKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8877765 677888888888888888888888888888888765543
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.67 E-value=3.3e-06 Score=68.65 Aligned_cols=150 Identities=22% Similarity=0.207 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 007775 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (590)
Q Consensus 247 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~ 326 (590)
+.+....-..+.+...|... -.+.++......|+ +.+|...|++++..+...++..+..++..
T Consensus 71 dP~R~~Rea~~~~~~ApTvq------nr~rLa~al~elGr-----------~~EA~~hy~qalsG~fA~d~a~lLglA~A 133 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ------NRYRLANALAELGR-----------YHEAVPHYQQALSGIFAHDAAMLLGLAQA 133 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH------HHHHHHHHHHHhhh-----------hhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence 34445555555666666543 67788999999999 99999999999855677889999999999
Q ss_pred HHHccCHHHHHHHHHHHHcccCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCH
Q 007775 327 YAEQRKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (590)
Q Consensus 327 ~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~ 404 (590)
.+..+++..|...+++..+.+|. .+ +....+++++...|++.+|...|+.++...| .+......+..+.++|+.
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~pa~r~p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp---g~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYNPAFRSP-DGHLLFARTLAAQGKYADAESAFEVAISYYP---GPQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcCCccCCC-CchHHHHHHHHhcCCchhHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcch
Confidence 99999999999999999998886 55 7888999999999999999999999999987 345666788999999999
Q ss_pred hHHHHHHHHHHHH
Q 007775 405 KGAVETYTHLLAA 417 (590)
Q Consensus 405 ~~A~~~~~~~l~~ 417 (590)
++|..-+....+.
T Consensus 210 ~ea~aq~~~v~d~ 222 (251)
T COG4700 210 REANAQYVAVVDT 222 (251)
T ss_pred hHHHHHHHHHHHH
Confidence 9988877766654
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=6.2e-07 Score=78.66 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHH
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKSEAISSYS---ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAV 520 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 520 (590)
.+..+.-+...|+|.+|...|..-++..|++ +.+++.||.+++.+|++++|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7778888889999999999999999999887 6789999999999999999999999999877765 577999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHhhcCCCHHHHH
Q 007775 521 VLRKLSDQSNAVIRSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 521 ~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~ 552 (590)
+...+|+.+ +|...|+++++..|+.+.+..
T Consensus 224 ~~~~l~~~d--~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTD--EACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHH--HHHHHHHHHHHHCCCCHHHHH
Confidence 999999988 999999999999998876554
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=4.4e-07 Score=74.46 Aligned_cols=113 Identities=11% Similarity=0.033 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSA-----SKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTA 519 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 519 (590)
.-+..-|+-++..|+|++|..-|..++.+.|..+ ..|.+.|.++.+++.++.|+..+.++++++|.+..++...+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3445567888999999999999999999998763 45788999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 520 VVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 520 ~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
.+|.++..++ +|+..|.++++.+|....+.-....+--
T Consensus 176 eayek~ek~e--ealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 176 EAYEKMEKYE--EALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHHHhhhhHH--HHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 9999999998 9999999999999998877766655443
No 196
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=3.9e-07 Score=74.80 Aligned_cols=115 Identities=19% Similarity=0.253 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007775 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSK 469 (590)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 469 (590)
-+..-|.-++..|+|++|...|..++...|.... ......+.+.|.++++++.++.|+....+
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-----------------e~rsIly~Nraaa~iKl~k~e~aI~dcsK 159 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTST-----------------EERSILYSNRAAALIKLRKWESAIEDCSK 159 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-----------------HHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence 3445677788899999999999999998864311 23356788999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 470 SEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 470 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
+++++|....++...+.+|.+..++++|+..|++.++.+|..-.+....+.+
T Consensus 160 aiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 160 AIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999876555444433
No 197
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=5.4e-05 Score=71.21 Aligned_cols=346 Identities=14% Similarity=0.066 Sum_probs=209.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHcCC---CCcchhhHHH
Q 007775 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRA-LECLGD---GCDQMESTAN 274 (590)
Q Consensus 199 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~-l~~~~~---~~~~~~~~~~ 274 (590)
......|++..+..-+..-.+.+. ....+.+.+.++.+...+..++.. +|.+.+... +...|. .+.-.....|
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vm--n~a~~s~~~l~LKsq~eY~~gn~~-kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVM--NIAQDSSMALLLKSQLEYAHGNHP-KAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhh--hhcCCCcHHHHHHHHHHHHhcchH-HHHHHHHhcccccccCccccchhhhheee
Confidence 334555677777777777777776 344466778888887777666544 777765432 222232 1111223467
Q ss_pred HHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHh-h--------CC---------CChHHHHHHHHHHHHccCHHHH
Q 007775 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS-T--------NM---------RDLSILYRLSLEYAEQRKLNAA 336 (590)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~--------~p---------~~~~~~~~la~~~~~~g~~~~A 336 (590)
.++|.++...+. +.-+..+|.+++ + . .| ...+++++.|..|...|+.-.|
T Consensus 287 NNlGcIh~~~~~-----------y~~~~~~F~kAL-~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~A 354 (696)
T KOG2471|consen 287 NNLGCIHYQLGC-----------YQASSVLFLKAL-RNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLA 354 (696)
T ss_pred cCcceEeeehhh-----------HHHHHHHHHHHH-HHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHH
Confidence 899999999999 888888888888 4 1 11 2237889999999999999999
Q ss_pred HHHHHHHHcccCCCcHHHHHHHHHHHHHcCC---hHHHHHHHHH--------------H--HhccCCC------CchHHH
Q 007775 337 HYYAKMLLKLEGGSNLKGWLLMARILSAQKR---YEDAETILNA--------------A--LDQTGKW------EQGELL 391 (590)
Q Consensus 337 ~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~---~~~A~~~~~~--------------a--~~~~~~~------~~~~~~ 391 (590)
.++|.++.+....++ ..|..++.+++...+ .++......+ . ++.+..+ .-+..-
T Consensus 355 fqCf~~av~vfh~nP-rlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~s 433 (696)
T KOG2471|consen 355 FQCFQKAVHVFHRNP-RLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLS 433 (696)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccc
Confidence 999999999998999 999999999875421 1111111111 0 0000000 001111
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHhhhh---hcccccc--------------------cccc-c---ccccccchH-
Q 007775 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQT---KTFSSDK--------------------RFYK-G---SANHARSLE- 443 (590)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~~--------------------~~~~-~---~~~~~~~~~- 443 (590)
...+ .-+++.++-+-|... ..+..+. .... + ..++..|..
T Consensus 434 lefA------------~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~ 501 (696)
T KOG2471|consen 434 LEFA------------RVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAF 501 (696)
T ss_pred cHHH------------HHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchH
Confidence 1222 223333332221110 0000000 0000 0 111122221
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHh------
Q 007775 444 -------LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLY-----EKKGLYKEAIKAFRSAL------ 505 (590)
Q Consensus 444 -------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~al------ 505 (590)
..++-..+.+-...|+.-.|+..-++.++. |+-..++..+|.+| ....+..+|...+.--+
T Consensus 502 e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f 580 (696)
T KOG2471|consen 502 EDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDF 580 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccc
Confidence 235556677778899999999999988875 45566666676665 44566666665543310
Q ss_pred -----------------ccCCCC---------------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC--CCHHHH
Q 007775 506 -----------------NIDPAH---------------VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG--MNSSAW 551 (590)
Q Consensus 506 -----------------~~~p~~---------------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p--~~~~~~ 551 (590)
.++|.. ....+++|.++.-+|+++ +|...+..+..+-+ .++.+.
T Consensus 581 ~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~d--qAk~ll~~aatl~hs~v~~~A~ 658 (696)
T KOG2471|consen 581 KLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHD--QAKSLLTHAATLLHSLVNVQAT 658 (696)
T ss_pred ccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccH--HHHHHHHHHHHhhhccccHHHH
Confidence 011111 235678999999999998 99999988888766 445555
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHh
Q 007775 552 YNLGLFYKSQGTQSSKLEAAECFEAAA 578 (590)
Q Consensus 552 ~~l~~~~~~~g~~~~~~~A~~~~~~al 578 (590)
..--.+-.++|+ ...|...+++.-
T Consensus 659 ~lavyidL~~G~---~q~al~~lk~~~ 682 (696)
T KOG2471|consen 659 VLAVYIDLMLGR---SQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHhcCC---CcchHHHHHhcc
Confidence 555555667899 888988888764
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.59 E-value=2.3e-07 Score=66.44 Aligned_cols=67 Identities=24% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 485 GVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 485 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
..+|...+++++|++.+++++..+|+++..+...|.++...|++. +|...|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~--~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYE--EALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHH--HHHHHHHHHHHHCCCcHHHHHH
Confidence 345666666666666666666666666666666666666666666 6666666666666666555443
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=6.8e-05 Score=64.81 Aligned_cols=186 Identities=15% Similarity=0.070 Sum_probs=126.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g 402 (590)
-|.+....|+..+.+.-+..... ....+..........+..+..+++- ...+.+.++.++.-.|
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~--------~V~~ii~~~e~~~~~ESsv~lW~KR--------l~~Vmy~~~~~llG~k 191 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKT--------VVSKILANLEQGLAEESSIRLWRKR--------LGRVMYSMANCLLGMK 191 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHH--------HHHHHHHHHHhccchhhHHHHHHHH--------HHHHHHHHHHHHhcch
Confidence 34455556666666654444321 1111122222222234445555442 2345667777778888
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CC
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS------SY 476 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~ 476 (590)
.|.-.+..+.+.++.+| |.++.....+|.+-++.||.+.|..+|++.-+.+ ..
T Consensus 192 Ey~iS~d~~~~vi~~~~---------------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~ 250 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYP---------------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG 250 (366)
T ss_pred hhhhhHHHHHHHHHhCC---------------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch
Confidence 88888888888888764 5667778888888888888888888888554322 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC
Q 007775 477 SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN 547 (590)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~ 547 (590)
+..+..+.+.++...+++.+|...|.+++..+|.++.+.++.|.|+.-.|+.. +|++..+.+++..|..
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~--DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK--DALKQLEAMVQQDPRH 319 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH--HHHHHHHHHhccCCcc
Confidence 34556677778888888888888888888888888888888888888888877 8888888888888764
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.57 E-value=2.6e-06 Score=67.39 Aligned_cols=107 Identities=13% Similarity=-0.002 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 431 (590)
..++.-|.-....|+|++|++.|+.+....|.. -...+...++.+|...+++++|+..+++.++++|.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h---------- 80 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH---------- 80 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------
Confidence 455555666666666666666666666555521 223455566666666666666666666666666544
Q ss_pred cccccccccchHHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHhcCCCCH
Q 007775 432 YKGSANHARSLELEVWLDLAFIYINLSQ---------------WHDAEICLSKSEAISSYSA 478 (590)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~a~~~~p~~~ 478 (590)
|.-.-+++..|.++..+.. ..+|...|++.+...|++.
T Consensus 81 ---------p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 81 ---------PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred ---------CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 3334455555555555443 4456666666666666654
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.55 E-value=2e-06 Score=67.98 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL 467 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 467 (590)
+..++.-|.-....|+|++|++.|+.+....|-. +-...+...++.+|...+++++|+..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-------------------~ya~qAqL~l~yayy~~~~y~~A~a~~ 70 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-------------------EYAEQAQLDLAYAYYKQGDYEEAIAAY 70 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------------------cccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3445566666666666666666666666655432 333456666666666666666666666
Q ss_pred HHHHhcCCCCH---HHHHHHHHHHHHcC
Q 007775 468 SKSEAISSYSA---SKCHATGVLYEKKG 492 (590)
Q Consensus 468 ~~a~~~~p~~~---~~~~~l~~~~~~~g 492 (590)
++.++++|.++ .+++..|.++..+.
T Consensus 71 ~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 71 DRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 66666666653 34555555555543
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=4.4e-05 Score=65.94 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----C--CCChhhHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAIS-SYSASKCHATGVLYEKKGLYKEAIKAFRSALNI----D--PAHVPSLI 516 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~ 516 (590)
..+.+.++.++.-.|.|.-....+.+.++.+ |.++.....+|.+..+.|+.+.|..+|+++-+. + .....+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4467788899999999999999999999988 667888999999999999999999999955432 2 33456777
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 517 STAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 517 ~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+.+.++.-.+++. +|...|.+++..+|.++.+-++.+.|+.-.|+ ..+|++..+.+++..|...
T Consensus 257 n~a~i~lg~nn~a--~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~---l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFA--EAHRFFTEILRMDPRNAVANNNKALCLLYLGK---LKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchH--HHHHHHhhccccCCCchhhhchHHHHHHHHHH---HHHHHHHHHHHhccCCccc
Confidence 8888888888888 99999999999999999999999999999999 9999999999999998754
No 203
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.49 E-value=9.6e-07 Score=71.97 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc
Q 007775 460 WHDAEICLSKSEAISSYSASKCHATGVLYEKKGL----------YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS 529 (590)
Q Consensus 460 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 529 (590)
++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+...+++++|.+|..++...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999988876643 567888888999999999999999999998876532
Q ss_pred ---------hHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 007775 530 ---------NAVIRSFLMAALRLDGMNSSAWYNLGLF 557 (590)
Q Consensus 530 ---------l~~A~~~~~~a~~~~p~~~~~~~~l~~~ 557 (590)
+++|..+|+++...+|++...+..|...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4588889999999999998776666443
No 204
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.47 E-value=1.7e-05 Score=76.11 Aligned_cols=99 Identities=23% Similarity=0.296 Sum_probs=88.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 007775 484 TGVLYEKKGLYKEAIKAFRSALNIDPAHV-PSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQG 562 (590)
Q Consensus 484 l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 562 (590)
-|..+...|+...|+.++..++...|... ....+|+.++.+.|... +|-.++.+++.+....|-.++.+|.++..+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~--da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHL--DATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhc--cHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 34445668999999999999999888643 45789999999999877 9999999999999888999999999999999
Q ss_pred CCCchHHHHHHHHHHhccccCCCCC
Q 007775 563 TQSSKLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 563 ~~~~~~~A~~~~~~al~l~p~~~~~ 587 (590)
+ .+.|++.|+.|++++|++|+.
T Consensus 691 ~---i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 691 N---ISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred h---hHHHHHHHHHHHhcCCCChhh
Confidence 9 999999999999999999864
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.44 E-value=4.9e-07 Score=65.66 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 007775 8 LLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYR 87 (590)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 87 (590)
.++.+++..|.++..+|+|++|+..|+++++. .+..++. ...+..++..++.+|...|++++|+..|+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~-----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD-----------HPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH-----------HHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC-----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46889999999999999999999999999999 4433221 12256788999999999999999999999
Q ss_pred HHhcc
Q 007775 88 RALLP 92 (590)
Q Consensus 88 ~~l~~ 92 (590)
+++..
T Consensus 71 ~al~i 75 (78)
T PF13424_consen 71 KALDI 75 (78)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98864
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.44 E-value=9.2e-07 Score=64.23 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=59.7
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
+...++..+|.+|..+|++++|+..|++++++... .....+..+.++.++|.++...|++++|++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQ---------------LGDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH---------------TTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------------HCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45678899999999999999999999999988421 112224557899999999999999999999
Q ss_pred HHHHHHhc
Q 007775 466 CLSKSEAI 473 (590)
Q Consensus 466 ~~~~a~~~ 473 (590)
++++++++
T Consensus 68 ~~~~al~i 75 (78)
T PF13424_consen 68 YYQKALDI 75 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999875
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.43 E-value=8e-07 Score=83.93 Aligned_cols=70 Identities=21% Similarity=0.213 Sum_probs=65.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh---HHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 473 ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS---LISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 473 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
.+|+++..++++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|+.+ +|+..++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~d--EAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGK--KAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhc
Confidence 578889999999999999999999999999999999999855 999999999999998 9999999999973
No 208
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.39 E-value=2.1e-05 Score=59.89 Aligned_cols=94 Identities=19% Similarity=0.123 Sum_probs=45.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC--chHHHHHHHHHHHH
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE--QGELLRTKAKVQLV 400 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~la~~~~~ 400 (590)
.|......|+.+.|++.|.+++.+.|..+ .+|.+.+..+.-+|+.++|+.-+++++++..... .-..+...|.+|..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~ra-SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERA-SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccch-HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555 5555555555555555555555555555433111 11234444555555
Q ss_pred hcCHhHHHHHHHHHHHH
Q 007775 401 QGQLKGAVETYTHLLAA 417 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~ 417 (590)
.|+.+.|..-|+.+.++
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 55555555555444444
No 209
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0029 Score=65.36 Aligned_cols=200 Identities=15% Similarity=0.076 Sum_probs=119.8
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHH
Q 007775 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (590)
Q Consensus 315 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~l 394 (590)
+.+.+|..+|.+..+.|...+|++.|-++ +++ ..+.....+..+.|+|++-++++..+.+... .+.+-..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDp-s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~---E~~id~eL 1172 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDP-SNYLEVIDVASRTGKYEDLVKYLLMARKKVR---EPYIDSEL 1172 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCc-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc---CccchHHH
Confidence 45678888888888888888888887665 455 6777788888888888888888887776653 22333355
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS 474 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 474 (590)
...|.+.++..+-.+... . |+ ..-....|+-++..|.|+.|.-+|..
T Consensus 1173 i~AyAkt~rl~elE~fi~-----g----------------------pN-~A~i~~vGdrcf~~~~y~aAkl~y~~----- 1219 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA-----G----------------------PN-VANIQQVGDRCFEEKMYEAAKLLYSN----- 1219 (1666)
T ss_pred HHHHHHhchHHHHHHHhc-----C----------------------CC-chhHHHHhHHHhhhhhhHHHHHHHHH-----
Confidence 566666666555433221 0 11 12223345555555555555544432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------------------------CCChhhHHHHHHHHHHcCCCc
Q 007775 475 SYSASKCHATGVLYEKKGLYKEAIKAFRSALNID-------------------------PAHVPSLISTAVVLRKLSDQS 529 (590)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------p~~~~~~~~l~~~~~~~g~~~ 529 (590)
..-|..++..+...|+|..|...-+++-... --+++-+-.+...|...|-++
T Consensus 1220 ---vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1220 ---VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 2234455555555555555555555442110 001333445666666777766
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007775 530 NAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQ 561 (590)
Q Consensus 530 l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 561 (590)
+-+..++.++.+...+...+..||.+|.+-
T Consensus 1297 --ElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1297 --ELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred --HHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 778777777777666666666777776654
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.38 E-value=1.3e-06 Score=82.65 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=67.3
Q ss_pred ccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007775 437 NHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK---CHATGVLYEKKGLYKEAIKAFRSALNID 508 (590)
Q Consensus 437 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~ 508 (590)
....|.++..|+++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34568899999999999999999999999999999999999854 9999999999999999999999999973
No 211
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.38 E-value=1.1e-06 Score=71.57 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc--------hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCC
Q 007775 494 YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS--------NAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQS 565 (590)
Q Consensus 494 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--------l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 565 (590)
|+.|.+.++.....+|.+++.+++-|.++..+.++. +++|+.-|++++.++|+...+++.+|.+|...+.-.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999999998876553 557888899999999999999999999998765311
Q ss_pred --------chHHHHHHHHHHhccccCCC
Q 007775 566 --------SKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 566 --------~~~~A~~~~~~al~l~p~~~ 585 (590)
.+++|.++|++|.+.+|+++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 37889999999999999875
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.36 E-value=1.4e-05 Score=60.78 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----hhhHHHHHHH
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH----VPSLISTAVV 521 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~ 521 (590)
.+-.-|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+. ..++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 344557778889999999999999999999999999999999999999999999999999886543 3467889999
Q ss_pred HHHcCCCchHHHHHHHHHHHhhcCC
Q 007775 522 LRKLSDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 522 ~~~~g~~~l~~A~~~~~~a~~~~p~ 546 (590)
|...|+.+ .|...|+.+.++...
T Consensus 125 yRl~g~dd--~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 125 YRLLGNDD--AARADFEAAAQLGSK 147 (175)
T ss_pred HHHhCchH--HHHHhHHHHHHhCCH
Confidence 99999988 999999988877554
No 213
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.29 E-value=0.0056 Score=61.09 Aligned_cols=186 Identities=13% Similarity=0.071 Sum_probs=96.0
Q ss_pred cCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccc--cc-cccccccccc
Q 007775 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK--RF-YKGSANHARS 441 (590)
Q Consensus 365 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~--~~-~~~~~~~~~~ 441 (590)
.+.++-|..+-+-+.+. ..+.++..++..+...|++++|-+.|-.+++++.-+.. |-.+. .. ...-...+.|
T Consensus 976 ~~afd~afdlari~~k~----k~~~vhlk~a~~ledegk~edaskhyveaiklntynit-wcqavpsrfd~e~ir~gnkp 1050 (1636)
T KOG3616|consen 976 NCAFDFAFDLARIAAKD----KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT-WCQAVPSRFDAEFIRAGNKP 1050 (1636)
T ss_pred ccchhhHHHHHHHhhhc----cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch-hhhcccchhhHHHHHcCCCh
Confidence 34444444444433332 34567888899999999999999999999988632110 00000 00 0000000011
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHH
Q 007775 442 LELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS-ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAV 520 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 520 (590)
.. -...+...++|..|...-+ ...|+. ++++..-++-....|++.+|...+-++- .|+-.- .
T Consensus 1051 e~------av~mfi~dndwa~aervae---~h~~~~l~dv~tgqar~aiee~d~~kae~fllran--kp~i~l------~ 1113 (1636)
T KOG3616|consen 1051 EE------AVEMFIHDNDWAAAERVAE---AHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN--KPDIAL------N 1113 (1636)
T ss_pred HH------HHHHhhhcccHHHHHHHHH---hhChhhhHHHHhhhhhccccccchhhhhhheeecC--CCchHH------H
Confidence 11 1123444555555544332 122322 5566666666667777777776665442 233211 1
Q ss_pred HHHHcCCCchHHHHHHHH----------------HHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007775 521 VLRKLSDQSNAVIRSFLM----------------AALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAA 577 (590)
Q Consensus 521 ~~~~~g~~~l~~A~~~~~----------------~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~a 577 (590)
.+...+-+. .|+.+.+ .+++....-.+.+..-+.-+.+.|+ |.+|..++-+.
T Consensus 1114 yf~e~~lw~--dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd---~rkav~~~lki 1181 (1636)
T KOG3616|consen 1114 YFIEAELWP--DALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGD---WRKAVDALLKI 1181 (1636)
T ss_pred HHHHhccCh--HHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhccc---HHHHHHHHhhh
Confidence 122333333 3333322 2333334445666667777788888 88888887665
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.27 E-value=0.0036 Score=58.95 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=41.6
Q ss_pred HHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007775 522 LRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAA 577 (590)
Q Consensus 522 ~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~a 577 (590)
+..+|++. ++.-+-.=..++.| ++.++..+|.++....+ |++|.+++...
T Consensus 472 Lysqgey~--kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~---Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYH--KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR---YQEAWEYLQKL 521 (549)
T ss_pred HHhcccHH--HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh---HHHHHHHHHhC
Confidence 45667777 77766666778899 89999999999999999 99999998753
No 215
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.27 E-value=1.2e-05 Score=74.53 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEK-KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 523 (590)
-+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-.. .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677888888888889999999999997777778999999999777 566666999999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 524 KLSDQSNAVIRSFLMAALRLDGMNS---SAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
..|+.+ .|..+|++++..-|... .+|......-...|+ .+....+.+++.+..|+++
T Consensus 82 ~~~d~~--~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDIN--NARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HH--HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhhh
Confidence 999988 99999999999866554 688888999999999 9999999999999888754
No 216
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0001 Score=62.53 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=122.8
Q ss_pred HHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccch
Q 007775 363 SAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSL 442 (590)
Q Consensus 363 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (590)
.-.+++++|.++|.++-.. |....++..|=..|.++-+.... ..+..+
T Consensus 25 gg~~k~eeAadl~~~Aan~----------------yklaK~w~~AG~aflkaA~~h~k----------------~~skhD 72 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANM----------------YKLAKNWSAAGDAFLKAADLHLK----------------AGSKHD 72 (288)
T ss_pred CCCcchHHHHHHHHHHHHH----------------HHHHHhHHHHHHHHHHHHHHHHh----------------cCCchh
Confidence 3445778887777765433 33344444555555555444311 011122
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCC----
Q 007775 443 ELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKK-GLYKEAIKAFRSALNIDPAH---- 511 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~---- 511 (590)
-..+|...+.+|.+ +++++|+.++++++++..+- +..+..+|.+|... .++++|+.+|+++-+.....
T Consensus 73 aat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 73 AATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 34455555566554 48899999999888876543 23355788888765 88999999999887643322
Q ss_pred --hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHH-------HHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 512 --VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSS-------AWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 512 --~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
-..+...+..-..+++|. +|+..|+++....-+++. .++.-|.++.-..+ .-.+...+++..+++|
T Consensus 152 sANKC~lKvA~yaa~leqY~--~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D---~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYS--KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD---EVNAQRALEKYQELDP 226 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc---HHHHHHHHHHHHhcCC
Confidence 234556677777889998 999999998876655543 33455777887788 8888888999999999
Q ss_pred CCCC
Q 007775 583 TAPV 586 (590)
Q Consensus 583 ~~~~ 586 (590)
....
T Consensus 227 ~F~d 230 (288)
T KOG1586|consen 227 AFTD 230 (288)
T ss_pred cccc
Confidence 7654
No 217
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0023 Score=66.01 Aligned_cols=288 Identities=14% Similarity=0.124 Sum_probs=167.1
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHH
Q 007775 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280 (590)
Q Consensus 201 la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 280 (590)
+|.+....+-|++|..+|++-- .+ ..+ ..+....-+..+.|.++.++.- .+ .+|..+|..
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~---~n---~~A----~~VLie~i~~ldRA~efAe~~n-----~p-----~vWsqlakA 1113 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD---MN---VSA----IQVLIENIGSLDRAYEFAERCN-----EP-----AVWSQLAKA 1113 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc---cc---HHH----HHHHHHHhhhHHHHHHHHHhhC-----Ch-----HHHHHHHHH
Confidence 3555566666777777776643 11 111 1222333445555555554431 12 589999999
Q ss_pred HhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHH
Q 007775 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (590)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 360 (590)
....|. ..+|++.|-++ ++|..+........+.|.|++-++++..+-+..... ..-..+..
T Consensus 1114 QL~~~~-----------v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~ 1174 (1666)
T KOG0985|consen 1114 QLQGGL-----------VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIF 1174 (1666)
T ss_pred HHhcCc-----------hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHH
Confidence 999999 89999988775 467788889999999999999999998887654432 23344555
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccccccccc
Q 007775 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHAR 440 (590)
Q Consensus 361 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (590)
.|.+.++..+-.+.+ ..| +.+.+ -..|+-+...|.|+.|.-+|..
T Consensus 1175 AyAkt~rl~elE~fi-----~gp--N~A~i-~~vGdrcf~~~~y~aAkl~y~~--------------------------- 1219 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-----AGP--NVANI-QQVGDRCFEEKMYEAAKLLYSN--------------------------- 1219 (1666)
T ss_pred HHHHhchHHHHHHHh-----cCC--CchhH-HHHhHHHhhhhhhHHHHHHHHH---------------------------
Confidence 666666666544432 122 22222 2445555555555555444331
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---------------------C----CCHHHHHHHHHHHHHcCCHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS---------------------S----YSASKCHATGVLYEKKGLYK 495 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------------p----~~~~~~~~l~~~~~~~g~~~ 495 (590)
..-|..++..+...|+|..|...-+++-... . -+++-+-.+...|...|-++
T Consensus 1220 ---vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1220 ---VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 2223444444444455554444444432111 0 01334556677788888899
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh---h-----cCCCHHHHHHHHHHHHHhCCCCch
Q 007775 496 EAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR---L-----DGMNSSAWYNLGLFYKSQGTQSSK 567 (590)
Q Consensus 496 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~---~-----~p~~~~~~~~l~~~~~~~g~~~~~ 567 (590)
+-+.+++.++.+...+...+..||.+|.+-.-- +-.+.++-... + .-+....|..+-.+|.+-.. |
T Consensus 1297 ElIsl~Ea~LGLERAHMgmfTELaiLYskykp~---km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~e---y 1370 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYSKYKPE---KMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEE---Y 1370 (1666)
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---h
Confidence 999999888888877777888888888764322 23222221111 0 01223456666666666555 5
Q ss_pred HHHH
Q 007775 568 LEAA 571 (590)
Q Consensus 568 ~~A~ 571 (590)
+.|.
T Consensus 1371 DNAa 1374 (1666)
T KOG0985|consen 1371 DNAA 1374 (1666)
T ss_pred hHHH
Confidence 5554
No 218
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0053 Score=59.19 Aligned_cols=376 Identities=13% Similarity=-0.004 Sum_probs=206.1
Q ss_pred HHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Q 007775 185 EELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGD 264 (590)
Q Consensus 185 e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~ 264 (590)
++-++.+|.|..+|+.+..-+-.+ .+++..+.|++.+ ..-|..+.++...+.--+ ..++++....+|.+.+...-+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~--~~FP~s~r~W~~yi~~El-~skdfe~VEkLF~RCLvkvLn 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLV--NVFPSSPRAWKLYIEREL-ASKDFESVEKLFSRCLVKVLN 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHhh
Confidence 455678999999999999987777 9999999999999 788887777766554433 445787888889988874332
Q ss_pred CCcchhhHHH-HHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH---------HHccCHH
Q 007775 265 GCDQMESTAN-CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY---------AEQRKLN 334 (590)
Q Consensus 265 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~---------~~~g~~~ 334 (590)
-+ .| +.+..+....++... .+.. ..+|-+.-..-+ ..++.....|...+..+ ..+.+.+
T Consensus 86 lD------LW~lYl~YVR~~~~~~~~---~r~~-m~qAy~f~l~ki-g~di~s~siW~eYi~FL~~vea~gk~ee~QRI~ 154 (656)
T KOG1914|consen 86 LD------LWKLYLSYVRETKGKLFG---YREK-MVQAYDFALEKI-GMDIKSYSIWDEYINFLEGVEAVGKYEENQRIT 154 (656)
T ss_pred Hh------HHHHHHHHHHHHccCcch---HHHH-HHHHHHHHHHHh-ccCcccchhHHHHHHHHHcccccccHHHHHHHH
Confidence 11 22 222222222222110 1111 222322222223 34566666666555433 3444677
Q ss_pred HHHHHHHHHHcccCCCcHHHHHHHHH-------------HHHHcCChHHHHHHHHHHHhcc-------C---CCC-----
Q 007775 335 AAHYYAKMLLKLEGGSNLKGWLLMAR-------------ILSAQKRYEDAETILNAALDQT-------G---KWE----- 386 (590)
Q Consensus 335 ~A~~~~~~~l~~~p~~~~~~~~~la~-------------~~~~~g~~~~A~~~~~~a~~~~-------~---~~~----- 386 (590)
.-.+.|++++..--.+....|...-. +--....|-.|...+++..... | ...
T Consensus 155 ~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 155 AVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 77888999986543333222322111 1122335566666665544332 1 000
Q ss_pred -chHHHHHHHHHHHHhcC------H--hHHHHHHHHHHHHHhhhhhccccccccccc-----------------------
Q 007775 387 -QGELLRTKAKVQLVQGQ------L--KGAVETYTHLLAALQVQTKTFSSDKRFYKG----------------------- 434 (590)
Q Consensus 387 -~~~~~~~la~~~~~~g~------~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------- 434 (590)
..+.|.++...-...+- . ..-.-.|++++...+-.++.|..+..++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 12233333322221110 0 112223455555444444444332222211
Q ss_pred ----ccccccchHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 435 ----SANHARSLELEVWLDLAFIYINLS---QWHDAEICLSKSEAISSYSA-SKCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 435 ----~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
........+...++.++..-...- +++.-...+++++.+...++ -+|..+-..-.+..-.+.|...|.++-+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 000000111222222222221111 24445556666666544443 3455555555666667788888888865
Q ss_pred cCCCChhhHHHHHHH-HHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 507 IDPAHVPSLISTAVV-LRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 507 ~~p~~~~~~~~l~~~-~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
..-....++..-|.+ |...++.. -|...|+--+...++++..-......+...|+ -..|...|++++..
T Consensus 395 ~~r~~hhVfVa~A~mEy~cskD~~--~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd---d~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYCSKDKE--TAFRIFELGLKKFGDSPEYVLKYLDFLSHLND---DNNARALFERVLTS 464 (656)
T ss_pred ccCCcchhhHHHHHHHHHhcCChh--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc---chhHHHHHHHHHhc
Confidence 433322334333333 33567777 89999999999999999888888888999999 89999999999876
No 219
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.00067 Score=64.14 Aligned_cols=164 Identities=10% Similarity=0.061 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-ccC------CCCchHHH
Q 007775 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD-QTG------KWEQGELL 391 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~------~~~~~~~~ 391 (590)
+.......+....+...+..-.+.++....+.+ .+....+..++..|++.+|.+.+...-- ..+ .-..-.+|
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~-~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSS-MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCc-HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 344445566777788888888888877777777 8999999999999999999998765321 111 11134467
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHH-HHhhhhhccccc-ccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007775 392 RTKAKVQLVQGQLKGAVETYTHLLA-ALQVQTKTFSSD-KRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSK 469 (590)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 469 (590)
+++|.++++.|.|.-+..+|.++++ .+..-...+... .... ......++.++.|..|...|++-.|.++|.+
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl------s~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL------SQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh------hcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 8999999999999999999999996 322111111110 0000 1133478899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHH
Q 007775 470 SEAISSYSASKCHATGVLYE 489 (590)
Q Consensus 470 a~~~~p~~~~~~~~l~~~~~ 489 (590)
+......+|..|..++.|+.
T Consensus 361 av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999999884
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.22 E-value=0.0051 Score=57.88 Aligned_cols=407 Identities=10% Similarity=-0.030 Sum_probs=236.8
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHH
Q 007775 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (590)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~ 233 (590)
++..|.|...|..|..-|...|.+++..+.+++.....|--+.+|......-+...++.....+|.+++....+ ...
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~---ldL 111 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN---LDL 111 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc---HhH
Confidence 45668888999999999999999999999999999988888999998888888889999999999999943333 222
Q ss_pred HHHHHHHHhcCCC-----C----HHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHH
Q 007775 234 LLIASKICGEYPD-----L----AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (590)
Q Consensus 234 ~~~~a~~~~~~~~-----~----~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~ 304 (590)
+.... -+..+.+ . .-+|.++.-..+-..|... ..|...+..+ ..+..-..+.+. ...+.-...
T Consensus 112 W~lYl-~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~-----~~W~ey~~fl-e~~~~~~kwEeQ-qrid~iR~~ 183 (660)
T COG5107 112 WMLYL-EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSE-----NYWDEYGLFL-EYIEELGKWEEQ-QRIDKIRNG 183 (660)
T ss_pred HHHHH-HHHHhhCcccccchhhhhHHHHHHHHhccccccccc-----chHHHHHHHH-HhccccccHHHH-HHHHHHHHH
Confidence 22211 1111111 1 1122222222222334433 2444444332 222222223322 226677777
Q ss_pred HHHHHHhhCCCChH-HHHH---------HHHHHH----HccCHHHHHHHHHHH---------------------------
Q 007775 305 LVSAARSTNMRDLS-ILYR---------LSLEYA----EQRKLNAAHYYAKML--------------------------- 343 (590)
Q Consensus 305 ~~~a~~~~~p~~~~-~~~~---------la~~~~----~~g~~~~A~~~~~~~--------------------------- 343 (590)
|.+++ ...-++.+ .|.. .+..-- ..--|-.|...+++.
T Consensus 184 Y~ral-~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S 262 (660)
T COG5107 184 YMRAL-QTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDS 262 (660)
T ss_pred HHHHH-cCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccc
Confidence 77776 44323221 1100 000000 001122223333222
Q ss_pred --------------------------------HcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHH
Q 007775 344 --------------------------------LKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (590)
Q Consensus 344 --------------------------------l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 391 (590)
+..-|-.+ ..|+.....+...++-+.|+....+++...| ...
T Consensus 263 ~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~-evw~dys~Y~~~isd~q~al~tv~rg~~~sp-----sL~ 336 (660)
T COG5107 263 NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAE-EVWFDYSEYLIGISDKQKALKTVERGIEMSP-----SLT 336 (660)
T ss_pred hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHhhccHHHHHHHHHHhcccCCC-----chh
Confidence 22222233 4555555556666777778877777777665 245
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc--------ccccccccccchHHHHHHHHHHHHHhcCChHHH
Q 007775 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR--------FYKGSANHARSLELEVWLDLAFIYINLSQWHDA 463 (590)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 463 (590)
..++..|....+-++...+|+++.+.-........+... +.++-..........+|+...+.-.+..-.+.|
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 567777777777776667777666543221111100000 000000000011233555555555666668889
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 464 EICLSKSEAISSYSASKCHATGVL-YEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 464 ~~~~~~a~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
...|.++-+..-..+.++..-|.+ +...|++.-|...|+-.+...|+.+......-..+...++-+ .|...|++++.
T Consensus 417 R~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~--naraLFetsv~ 494 (660)
T COG5107 417 RKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE--NARALFETSVE 494 (660)
T ss_pred HHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH--HHHHHHHHhHH
Confidence 999988876553344444433333 456799999999999999999998877777777888889988 99999998876
Q ss_pred hcCCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 543 LDGMN--SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 543 ~~p~~--~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
.-... ...|..+-..-..-|+ ...+...=++..++.|.
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~---lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGS---LNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcc---hHHHHhHHHHHHHHcCc
Confidence 43333 4556555555566677 77777666666666664
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.20 E-value=0.0078 Score=59.12 Aligned_cols=185 Identities=14% Similarity=0.033 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY 432 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 432 (590)
..|......-...|+++...-.|++++--.. ...++|...+......|+.+-|...+..+.+...
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~------------- 362 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCA--LYDEFWIKYARWMESSGDVSLANNVLARACKIHV------------- 362 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-------------
Confidence 5666777777778888888888888877655 5567788888888888888888877777777652
Q ss_pred ccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHhccCC
Q 007775 433 KGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAI---KAFRSALNIDP 509 (590)
Q Consensus 433 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~~~~al~~~p 509 (590)
+..+.+...-+......|+++.|...+++.....|+...+-...+....++|+.+.+. .++.....-..
T Consensus 363 --------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~ 434 (577)
T KOG1258|consen 363 --------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE 434 (577)
T ss_pred --------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc
Confidence 4446677777777788888888888888888877887777777777777888888777 33333322111
Q ss_pred CC---hhhHHHHHHHHHH-cCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 007775 510 AH---VPSLISTAVVLRK-LSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQG 562 (590)
Q Consensus 510 ~~---~~~~~~l~~~~~~-~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 562 (590)
+. ...+...+..... .++.+ .|...+.++++..|.+...|..+-.+....+
T Consensus 435 ~~~i~~~l~~~~~r~~~~i~~d~~--~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 435 NNGILEKLYVKFARLRYKIREDAD--LARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CcchhHHHHHHHHHHHHHHhcCHH--HHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 11 2223334443333 34545 8888888888888888888877777766654
No 222
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.18 E-value=0.0001 Score=68.29 Aligned_cols=136 Identities=10% Similarity=0.074 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 007775 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA-QKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~ 397 (590)
+|..+.....+.+..+.|..+|.++.+..+... ..|...|.+-.. .++.+.|.++|+.+++..| .+..+|......
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~-~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY-HVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T-HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Confidence 344455555555555666666666654444344 555555555444 3444446666666665555 555555555555
Q ss_pred HHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007775 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY 476 (590)
Q Consensus 398 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 476 (590)
+...|+.+.|..+|++++..-+.. .....+|......-...|+.+...++.+++.+..|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~-------------------~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKE-------------------KQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCH-------------------HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCch-------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 555666666666665555442110 001345555555555555555555555555555554
No 223
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.002 Score=55.02 Aligned_cols=145 Identities=16% Similarity=0.077 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc----hHHHHHHHHHHHHh-cCHhHHHHHHHHHHHHHhhhhhccccc
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----GELLRTKAKVQLVQ-GQLKGAVETYTHLLAALQVQTKTFSSD 428 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~ 428 (590)
++...+.+| +.+++++|..++++++++..+... +..+..+|.+|..- .++++|+.+|+++-+.....
T Consensus 76 ~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e------- 147 (288)
T KOG1586|consen 76 TYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE------- 147 (288)
T ss_pred HHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch-------
Confidence 344444444 344788888888888877642211 23455788888765 89999999999998876321
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHH
Q 007775 429 KRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS-------KCHATGVLYEKKGLYKEAIKAF 501 (590)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~ 501 (590)
+.....-..+...+..-...++|.+|+..|++.....-+++. .++.-|.|+.-..+.-.+...+
T Consensus 148 ---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~AL 218 (288)
T KOG1586|consen 148 ---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRAL 218 (288)
T ss_pred ---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHH
Confidence 111222446777778888899999999999998776555532 3556677888878888888889
Q ss_pred HHHhccCCCChhhH
Q 007775 502 RSALNIDPAHVPSL 515 (590)
Q Consensus 502 ~~al~~~p~~~~~~ 515 (590)
++-.+++|......
T Consensus 219 eky~~~dP~F~dsR 232 (288)
T KOG1586|consen 219 EKYQELDPAFTDSR 232 (288)
T ss_pred HHHHhcCCcccccH
Confidence 99999999876553
No 224
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.9e-06 Score=70.09 Aligned_cols=116 Identities=18% Similarity=0.068 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 523 (590)
..-...-|+.+....+|..|+.+|.+++.++|..+..|.+.+.++++..+++.+....++++++.|+.+..++.+|..+.
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 34455667888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHHHhhc-----CCCHHHHHHHHHHHHHh
Q 007775 524 KLSDQSNAVIRSFLMAALRLD-----GMNSSAWYNLGLFYKSQ 561 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~~-----p~~~~~~~~l~~~~~~~ 561 (590)
....++ +|+..+.++..+. |.-.+.+..|-.+-...
T Consensus 90 ~s~~~~--eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 90 QSKGYD--EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKR 130 (284)
T ss_pred hhcccc--HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCc
Confidence 999999 9999999996542 22245666665554433
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.14 E-value=0.00018 Score=68.53 Aligned_cols=194 Identities=13% Similarity=0.055 Sum_probs=113.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh
Q 007775 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (590)
Q Consensus 322 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~ 401 (590)
.+..-..+..+...-++...++++++|+.. .+|..++.=. .....+|.++++++++... .. ..........
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCA-dAYILLAEEe--A~Ti~Eae~l~rqAvkAgE--~~----lg~s~~~~~~ 243 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCA-DAYILLAEEE--ASTIVEAEELLRQAVKAGE--AS----LGKSQFLQHH 243 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhh-HHHhhccccc--ccCHHHHHHHHHHHHHHHH--Hh----hchhhhhhcc
Confidence 334444566677777888888888888887 7877766532 2346778888888776553 00 0011111111
Q ss_pred cCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CHH
Q 007775 402 GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY--SAS 479 (590)
Q Consensus 402 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~ 479 (590)
|..-+.. ..+ +......+...+|.+..+.|+.++|++.++..++.+|. +..
T Consensus 244 g~~~e~~--~~R-------------------------dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~ 296 (539)
T PF04184_consen 244 GHFWEAW--HRR-------------------------DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN 296 (539)
T ss_pred cchhhhh--hcc-------------------------ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh
Confidence 1111110 000 00112445566788888888888888888888877665 355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCChhhHHHHHHHHHH-cCCC-----------c--hHHHHHHHHHHHhhc
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNI-DPAHVPSLISTAVVLRK-LSDQ-----------S--NAVIRSFLMAALRLD 544 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~-~g~~-----------~--l~~A~~~~~~a~~~~ 544 (590)
+..++..++...+.+.++...+.+--++ -|..+...+.-+.+-.+ .++. . -..|.+.+.+|++.+
T Consensus 297 IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 297 IRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 7778888888888888888877775433 24444444444443322 1110 0 014567788888888
Q ss_pred CCCHHHH
Q 007775 545 GMNSSAW 551 (590)
Q Consensus 545 p~~~~~~ 551 (590)
|..+..+
T Consensus 377 PHVp~YL 383 (539)
T PF04184_consen 377 PHVPKYL 383 (539)
T ss_pred CCCchhh
Confidence 8766543
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.14 E-value=0.00084 Score=64.12 Aligned_cols=189 Identities=16% Similarity=0.110 Sum_probs=126.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHH
Q 007775 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (590)
Q Consensus 199 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~ 278 (590)
..+..-..+..+.+.-++.-++++ ..+|+...++.+++.- ......++..+++++++.... .++
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eAL--ei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~-----------~lg 235 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEAL--EINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEA-----------SLG 235 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH--HhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHH-----------hhc
Confidence 345555678888899999999999 7899999988877743 344567999999999885432 111
Q ss_pred HHH--hhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC-CcHH
Q 007775 279 ISL--SAQSKVAITDFDRATRQAKALQALVSAARSTNMRD--LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLK 353 (590)
Q Consensus 279 ~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~ 353 (590)
... ...|. +-+.. ...+.+ ..+...+|.+..+.|+.++|++.++.+++..|. +...
T Consensus 236 ~s~~~~~~g~------------------~~e~~-~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~ 296 (539)
T PF04184_consen 236 KSQFLQHHGH------------------FWEAW-HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN 296 (539)
T ss_pred hhhhhhcccc------------------hhhhh-hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh
Confidence 111 11111 11111 111122 345677899999999999999999999987776 3336
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh-cC---------------HhHHHHHHHHHHHH
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQ---------------LKGAVETYTHLLAA 417 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~~l~~ 417 (590)
+...+..++...+.|.++..++.+--+.. -+..+.+.+..+.+..+. ++ -..|++.+.++++.
T Consensus 297 IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 297 IRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 88899999999999999999998854332 124455555544443321 11 13477889999999
Q ss_pred Hhhhhh
Q 007775 418 LQVQTK 423 (590)
Q Consensus 418 ~~~~~~ 423 (590)
+|.-++
T Consensus 376 NPHVp~ 381 (539)
T PF04184_consen 376 NPHVPK 381 (539)
T ss_pred CCCCch
Confidence 876554
No 227
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.9e-05 Score=65.26 Aligned_cols=94 Identities=24% Similarity=0.224 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007775 482 HATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQ 561 (590)
Q Consensus 482 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 561 (590)
..-|..++...+|+.|+..|.+++.++|..+..+.+.+.++++..+++ .+.....++++++|+....++.+|.+....
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~--~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE--PVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh--hhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 344666777788999999999999999998888999999999999988 888889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhcc
Q 007775 562 GTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 562 g~~~~~~~A~~~~~~al~l 580 (590)
.. +++|+..+.+|..+
T Consensus 92 ~~---~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KG---YDEAIKVLQRAYSL 107 (284)
T ss_pred cc---ccHHHHHHHHHHHH
Confidence 98 99999999998553
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00034 Score=62.86 Aligned_cols=172 Identities=15% Similarity=0.072 Sum_probs=119.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccc
Q 007775 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKG 434 (590)
Q Consensus 355 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 434 (590)
...-+.+....|++.+|....++.++..| .+..++..--.++...|+...-...+++++..+.
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--------------- 168 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--------------- 168 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccC---------------
Confidence 33445566777888888888888888887 6766666666777778888887777777776631
Q ss_pred ccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---
Q 007775 435 SANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH--- 511 (590)
Q Consensus 435 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 511 (590)
.+.|-..-+.-.++-.+...|-|++|.+.-+++++++|.+..+...++.++...|++.++.+...+.-..-...
T Consensus 169 ---~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~ml 245 (491)
T KOG2610|consen 169 ---ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWML 245 (491)
T ss_pred ---CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHH
Confidence 22255555666677777888888888888888888888888888888888888888888888777654322211
Q ss_pred -hhhHHHHHHHHHHcCCCchHHHHHHHHHHH--hhcCCCH
Q 007775 512 -VPSLISTAVVLRKLSDQSNAVIRSFLMAAL--RLDGMNS 548 (590)
Q Consensus 512 -~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~--~~~p~~~ 548 (590)
..-|...+..+...+.++ .|+++|.+-+ ++..++.
T Consensus 246 asHNyWH~Al~~iE~aeye--~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYE--KALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HhhhhHHHHHhhhcccchh--HHHHHHHHHHHHHhhccch
Confidence 122445566677777777 8888887654 2445555
No 229
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0098 Score=56.60 Aligned_cols=449 Identities=15% Similarity=0.060 Sum_probs=261.0
Q ss_pred HHHHHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcch
Q 007775 61 TLNRAVELLPELWKLAD--APRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNI 138 (590)
Q Consensus 61 ~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (590)
.+..++--+++-+..+| +...+|.+.+-.... .|.....+.-..+++..+++ -..+.
T Consensus 5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~--~is~~veart~LqLg~lL~~-------------------yT~N~ 63 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQF--QISFLVEARTHLQLGALLLR-------------------YTKNV 63 (629)
T ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHH-------------------HhccH
Confidence 34566666777777888 888899888877665 22222233334455555442 12344
Q ss_pred HHHHHHHHHHHHHHHhhhcCCc----hhHHHHHHHHHHhcC-CHHHHHHHHHHHcCCCCCch----HHHHHHHHHHHhCC
Q 007775 139 EEAILLLMILLRKVALKRIEWD----PSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRK----ERYHILALCYYGAG 209 (590)
Q Consensus 139 ~~a~~~l~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g-~~~~a~~~~e~~~~~~~~~~----~~~~~la~~~~~~g 209 (590)
+.|-..+..+.. ..+.+|.. ...+..|+..+.... .+..+...+.+++......+ ...++++..+.-..
T Consensus 64 elAksHLekA~~--i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk 141 (629)
T KOG2300|consen 64 ELAKSHLEKAWL--ISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK 141 (629)
T ss_pred HHHHHHHHHHHH--HHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc
Confidence 455444433211 11233331 236677788777766 67778888888876554444 34578899999999
Q ss_pred ChHHHHHHHHHhhcCCCCCCCh---HHHHHH--HHHHhcC--CCCHHHHHHHHHHHHHHcCCCCcc--hhhHHHHHHHHH
Q 007775 210 EDLVALNLLRTLLSGSEDPKCL---PALLIA--SKICGEY--PDLAEEGATFASRALECLGDGCDQ--MESTANCLLGIS 280 (590)
Q Consensus 210 ~~~~A~~~~~~~l~~~~~p~~~---~~~~~~--a~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~--~~~~~~~~l~~~ 280 (590)
++..|++.+.-... ..++-.. ...+.+ +.+.... ..+.+.......++.+....++.. .....|..+-.+
T Consensus 142 D~~sA~elLavga~-sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~ 220 (629)
T KOG2300|consen 142 DFPSALELLAVGAE-SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLS 220 (629)
T ss_pred cchhHHHHHhcccc-ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99999999554331 1222211 111111 1122222 223444455555555544333311 111233444433
Q ss_pred H-hhchhhccChHHHHHHHHHHHHHHHHHHHhhCCC-----------C-h-----------HHHHHHHH--HHHHccCHH
Q 007775 281 L-SAQSKVAITDFDRATRQAKALQALVSAARSTNMR-----------D-L-----------SILYRLSL--EYAEQRKLN 334 (590)
Q Consensus 281 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~-----------~-~-----------~~~~~la~--~~~~~g~~~ 334 (590)
| ...|+. +-...+++.+++.+..+.+. + + .++..+-. .-...|-++
T Consensus 221 yy~~~gq~--------rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~ 292 (629)
T KOG2300|consen 221 YYLLPGQV--------RTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFK 292 (629)
T ss_pred HHhcccch--------hhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHH
Confidence 3 333441 11223444444444122221 0 1 11111111 112457788
Q ss_pred HHHHHHHHHHccc------CCCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---CCC-----CchHHHHH
Q 007775 335 AAHYYAKMLLKLE------GGSN-------LKGWLLMARILSAQKRYEDAETILNAALDQT---GKW-----EQGELLRT 393 (590)
Q Consensus 335 ~A~~~~~~~l~~~------p~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~-----~~~~~~~~ 393 (590)
+|.++-++++... |... ...+-.++.+-.-.|++.+|++-...+.+.. |.+ ..+.++..
T Consensus 293 ~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~L 372 (629)
T KOG2300|consen 293 KAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHML 372 (629)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHH
Confidence 8888888877432 1111 0223344555566799999999988887754 321 12456777
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007775 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI 473 (590)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 473 (590)
+|.....-+.++.|...|..+.+.-... .-.+.+..++|..|.+.|+-+.-.+.++. +
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~~~-------------------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i 430 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTESI-------------------DLQAFCNLNLAISYLRIGDAEDLYKALDL---I 430 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhhHH-------------------HHHHHHHHhHHHHHHHhccHHHHHHHHHh---c
Confidence 8888888899999999999999874211 22355677899999998876655544443 4
Q ss_pred CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-C-----hhhHHHHHHHHHHcCCCchHHHHHHH
Q 007775 474 SSYS----------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA-H-----VPSLISTAVVLRKLSDQSNAVIRSFL 537 (590)
Q Consensus 474 ~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~~~~~l~~~~~~~g~~~l~~A~~~~ 537 (590)
.|.+ ..+++..|...+.++++.||...+++.++.... + .-.+..++.+....|+.. ++....
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~--es~nmv 508 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV--ESRNMV 508 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH--HHHhcc
Confidence 4443 345778888889999999999999999987521 1 334667888889999998 999888
Q ss_pred HHHHhhc---CCCHHHH---HHHHHHHHHhCCCC
Q 007775 538 MAALRLD---GMNSSAW---YNLGLFYKSQGTQS 565 (590)
Q Consensus 538 ~~a~~~~---p~~~~~~---~~l~~~~~~~g~~~ 565 (590)
.-+++.. |+.+..+ ..+-.++...|+++
T Consensus 509 rpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~ 542 (629)
T KOG2300|consen 509 RPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKG 542 (629)
T ss_pred chHHHHHhcCCCchHHHHHHHHHHHHHHHhCcch
Confidence 8777653 4444322 23456677777643
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.09 E-value=7.3e-06 Score=51.34 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGV 486 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 486 (590)
.+|..+|..|...|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999999875
No 231
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.06 E-value=0.014 Score=61.02 Aligned_cols=337 Identities=16% Similarity=0.070 Sum_probs=200.1
Q ss_pred HHHHHHHHHhhc-CCCCCC-ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-cchhhHHHHHHHHHHhhchhhc
Q 007775 212 LVALNLLRTLLS-GSEDPK-CLPALLIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVA 288 (590)
Q Consensus 212 ~~A~~~~~~~l~-~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 288 (590)
..|+.+++-+++ ....|. .....+.++.+++....+.++|..++++++.+...+. ...+-.+...++.++.+.+.
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~-- 115 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP-- 115 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH--
Confidence 347778877773 223332 5667778888888888889999999999988775522 22334466777888888877
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhhCCC---ChHH-HHHH--HHHHHHccCHHHHHHHHHHHHccc--CCCc-H--HHHHH
Q 007775 289 ITDFDRATRQAKALQALVSAARSTNMR---DLSI-LYRL--SLEYAEQRKLNAAHYYAKMLLKLE--GGSN-L--KGWLL 357 (590)
Q Consensus 289 ~~~~~~~~~~~~A~~~~~~a~~~~~p~---~~~~-~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~-~--~~~~~ 357 (590)
.. |...+++.+ ..... .... .+.+ ...+...+++..|++.++...... +.++ . .+...
T Consensus 116 ---------~~-a~~~l~~~I-~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 116 ---------KA-ALKNLDKAI-EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred ---------HH-HHHHHHHHH-HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 44 888888887 44322 2222 1222 233333479999999999988654 2333 1 12233
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccC------C--CCchHHHHHHHH--HHHHhcCHhHHHHHHHHHHHHHhhhhhc--c
Q 007775 358 MARILSAQKRYEDAETILNAALDQTG------K--WEQGELLRTKAK--VQLVQGQLKGAVETYTHLLAALQVQTKT--F 425 (590)
Q Consensus 358 la~~~~~~g~~~~A~~~~~~a~~~~~------~--~~~~~~~~~la~--~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~ 425 (590)
.+.+....+..+++++.++++..... . +....++..+-. ++...|+++.+...+++.-..-...... |
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence 35566677888888888887744321 1 123344444444 4456677777766655554433222221 1
Q ss_pred cc---c-cccccc-----------ccccccc---hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCC---
Q 007775 426 SS---D-KRFYKG-----------SANHARS---LELEVWLDLAFIYINLSQWHDAEICLSKSEAIS-------SYS--- 477 (590)
Q Consensus 426 ~~---~-~~~~~~-----------~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------p~~--- 477 (590)
.. . ...... -.....| -..-++..-|......+..++|.++++++++.- +..
T Consensus 265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~ 344 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSE 344 (608)
T ss_pred CCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 11 0 000000 0000001 112234444566667777778888888876531 111
Q ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CC------ChhhHHHHHHHHHHcCCCchHH
Q 007775 478 ----------------ASKCHATGVLYEKKGLYKEAIKAFRSALNID---PA------HVPSLISTAVVLRKLSDQSNAV 532 (590)
Q Consensus 478 ----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~l~~~~~~~g~~~l~~ 532 (590)
.......+.+..-.+++..|....+.+.+.. |. .+..++..|..+...|+.+ .
T Consensus 345 sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~--~ 422 (608)
T PF10345_consen 345 SLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLE--A 422 (608)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHH--H
Confidence 1124456777788999999999888776542 22 3667888899999999988 9
Q ss_pred HHHHHH--------HHHhhcCCCH---HHHHHHHHHHHHhCC
Q 007775 533 IRSFLM--------AALRLDGMNS---SAWYNLGLFYKSQGT 563 (590)
Q Consensus 533 A~~~~~--------~a~~~~p~~~---~~~~~l~~~~~~~g~ 563 (590)
|+..|. .+....+.+. -+..++..++...+.
T Consensus 423 A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 423 ALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred HHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 999998 3333444332 233456777776665
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0024 Score=54.98 Aligned_cols=221 Identities=14% Similarity=0.120 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC-----CcHHHHHHHHHHHHHcCChH
Q 007775 298 QAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-----SNLKGWLLMARILSAQKRYE 369 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~g~~~ 369 (590)
..++.+...+......|+- ...+..-+..|....++++|..++.++.+-..+ +...++-..+.+......+.
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls 88 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455555555441223322 245666777888889999999999999854433 33345666777777888999
Q ss_pred HHHHHHHHHHhccC---CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHH
Q 007775 370 DAETILNAALDQTG---KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEV 446 (590)
Q Consensus 370 ~A~~~~~~a~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (590)
++..+++++..... .++.+..-...+--....-++++|+++|++++.+..... ......+.
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d----------------r~~ma~el 152 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD----------------RDQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc----------------hHHHHHHH
Confidence 99999999987642 234444444555556677889999999999998863221 11122456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCChhhHH
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKSEAI------SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI----DPAHVPSLI 516 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 516 (590)
+...++++.+..++++|-..+.+-... .+.....+.....++....+|..|..+++..-++ .|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 777889999999999998877764332 2333344666666777778999999999987664 355566666
Q ss_pred HHHHHHHHcCCCchHHHHHHH
Q 007775 517 STAVVLRKLSDQSNAVIRSFL 537 (590)
Q Consensus 517 ~l~~~~~~~g~~~l~~A~~~~ 537 (590)
+|-..| ..|+.+ +....+
T Consensus 233 nLL~ay-d~gD~E--~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIE--EIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHH--HHHHHH
Confidence 665554 345555 554443
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00081 Score=57.72 Aligned_cols=199 Identities=14% Similarity=0.052 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC----CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSD 428 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 428 (590)
..+..-+..|...+++++|...+.++.+-.... .-+..+-..+.+......+.++..+|+++......
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E-------- 103 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE-------- 103 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------
Confidence 455566777788899999999999998655311 11344556677777888999999999999988732
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 007775 429 KRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFR 502 (590)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 502 (590)
...|..+..-...+--.....++++|+.+|++++.+...+ .+.+...++++.+..++++|-..+.
T Consensus 104 ---------~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 104 ---------CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred ---------hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 2235555555566666677889999999999998865443 3456677888999999999988877
Q ss_pred HHhcc------CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh----cCCCHHHHHHHHHHHHHhCCCCchHHHHH
Q 007775 503 SALNI------DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL----DGMNSSAWYNLGLFYKSQGTQSSKLEAAE 572 (590)
Q Consensus 503 ~al~~------~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~g~~~~~~~A~~ 572 (590)
+-... .|+....+.....++....+|. .|...++...++ .|++..+..+|-..| ..|+ .++...
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv--~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD---~E~~~k 248 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYV--QAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD---IEEIKK 248 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHH--HHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC---HHHHHH
Confidence 64322 2333444555566666677888 999999887664 355666676666655 3566 666655
Q ss_pred HH
Q 007775 573 CF 574 (590)
Q Consensus 573 ~~ 574 (590)
..
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 44
No 234
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.00 E-value=6.8e-06 Score=47.75 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=26.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHH
Q 007775 537 LMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAA 571 (590)
Q Consensus 537 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~ 571 (590)
|+++++++|+++.+|+++|.+|...|+ +++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~---~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGD---YEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcC---HHhhc
Confidence 678888888888888888888888888 88775
No 235
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.99 E-value=0.0059 Score=62.62 Aligned_cols=246 Identities=17% Similarity=0.154 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc-----cCHHHHHHHHHHHHcc-----cCCCcHHHHHHHHHHHHHcC-
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----RKLNAAHYYAKMLLKL-----EGGSNLKGWLLMARILSAQK- 366 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~~la~~~~~~g- 366 (590)
...|...++.+. . ..+..+...+|.+|..- .|.+.|+.+++.+.+. .-..+ .+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a-~--~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~-~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAA-K--LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP-PAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHH-h--hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC-ccccHHHHHHhcCCC
Confidence 457888888766 3 45667777787777643 6888999999888661 11134 57788888888753
Q ss_pred ----ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc---CHhHHHHHHHHHHHHHhhhhhcccccccccccccccc
Q 007775 367 ----RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG---QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHA 439 (590)
Q Consensus 367 ----~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 439 (590)
+++.|..++.++.+... +...+.+|.++..-. ++..|.++|..+....
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--------------------- 358 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--------------------- 358 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---------------------
Confidence 67779999988887753 566778888887655 5678888888888753
Q ss_pred cchHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc--------
Q 007775 440 RSLELEVWLDLAFIYIN----LSQWHDAEICLSKSEAISSYSASKCHATGVLYEKK-GLYKEAIKAFRSALN-------- 506 (590)
Q Consensus 440 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~-------- 506 (590)
+..+.+.++.+|.. ..+...|..++.++-+.+ ++.+...++..+..- ++++.+.-.+...-.
T Consensus 359 ---~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~ 433 (552)
T KOG1550|consen 359 ---HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS 433 (552)
T ss_pred ---ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh
Confidence 36677777777765 357788888888888776 334444444333222 444333332221110
Q ss_pred ------------c--------------------CCCChhhHHHHHHHHHHc----CCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 507 ------------I--------------------DPAHVPSLISTAVVLRKL----SDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 507 ------------~--------------------~p~~~~~~~~l~~~~~~~----g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
. ...+..+...+|.+|..- .+++ .|...|.++.... +..
T Consensus 434 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~--~a~~~y~~a~~~~---~~~ 508 (552)
T KOG1550|consen 434 NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPE--KAAAQYARASEQG---AQA 508 (552)
T ss_pred HHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChH--HHHHHHHHHHHhh---hHH
Confidence 0 112244556666666544 2244 7888888887766 788
Q ss_pred HHHHHHHHHHh-CCCCchHHHHHHHHHHhccccC
Q 007775 551 WYNLGLFYKSQ-GTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 551 ~~~l~~~~~~~-g~~~~~~~A~~~~~~al~l~p~ 583 (590)
.+++|.++..- |-+. +..|.++|.++.+.++.
T Consensus 509 ~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 509 LFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSR 541 (552)
T ss_pred HhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCch
Confidence 88899888753 4422 57888888888776554
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.98 E-value=0.016 Score=54.77 Aligned_cols=137 Identities=18% Similarity=0.082 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCC-hHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHH--HHHHHHHHHHhhhhhcccccc
Q 007775 353 KGWLLMARILSAQKR-YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV--ETYTHLLAALQVQTKTFSSDK 429 (590)
Q Consensus 353 ~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~~l~~~~~~~~~~~~~~ 429 (590)
..+..-|.-+++.|. -++|+.+++.+++..+ .+..+.+. ..... ...|.+|+ ..+.+.+.+..-- +..
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~ft~--yD~ec~n~-v~~fv-Kq~Y~qaLs~~~~~rLlkLe~fi-~e~---- 450 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQFTN--YDIECENI-VFLFV-KQAYKQALSMHAIPRLLKLEDFI-TEV---- 450 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc--ccHHHHHH-HHHHH-HHHHHHHHhhhhHHHHHHHHHHH-Hhc----
Confidence 344455667777777 7889999999998887 55544322 11111 11233332 2233333321000 000
Q ss_pred cccccccccccchHHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007775 430 RFYKGSANHARSLELEVWLDLA--FIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSA 504 (590)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 504 (590)
...+..-.+.+.-+.++ ..+..+|+|.++.-+-.-..++.| ++.++..+|.++....+|++|..++...
T Consensus 451 -----gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 451 -----GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred -----CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 01111123344444444 557789999999988888888999 8999999999999999999999998754
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0003 Score=63.18 Aligned_cols=170 Identities=9% Similarity=-0.066 Sum_probs=135.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-cCC-CCchHHHHHHHHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ-TGK-WEQGELLRTKAKV 397 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~-~~~~~~~~~la~~ 397 (590)
...-+.+..-.|++.+|....++.++..|.+. .++..--..++..|+...-...+++.+.. ++. |-...+.-.++..
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl-la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL-LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhh-hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 33455667788999999999999999999998 89999999999999999999999998876 431 1224555677888
Q ss_pred HHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 398 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
+..+|-|++|.+..+++++++ +.+.-+....+.++...|++.++.+.+.+.-..-...
T Consensus 185 L~E~g~y~dAEk~A~ralqiN----------------------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s 242 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQIN----------------------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS 242 (491)
T ss_pred HHHhccchhHHHHHHhhccCC----------------------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh
Confidence 899999999999999999998 6678888889999999999999999988764433222
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCCh
Q 007775 478 ----ASKCHATGVLYEKKGLYKEAIKAFRSAL--NIDPAHV 512 (590)
Q Consensus 478 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~ 512 (590)
..-|...+.++...+.|+.|++.|.+-+ ++..++.
T Consensus 243 ~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 243 WMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 1225567888888999999999998754 3344454
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.96 E-value=0.0076 Score=60.29 Aligned_cols=180 Identities=16% Similarity=0.059 Sum_probs=127.0
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchH---HHHHHHH
Q 007775 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLE---LEVWLDL 450 (590)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l 450 (590)
.|.-++..-| + ....+..+.--.|+-+.++..+.++.+.. +- . .|-- .-.|+..
T Consensus 179 ~f~L~lSlLP----p-~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i---~--------------~~la~L~LL~y~~~ 235 (468)
T PF10300_consen 179 LFNLVLSLLP----P-KVLKLLSFVGFSGDRELGLRLLWEASKSE-NI---R--------------SPLAALVLLWYHLV 235 (468)
T ss_pred HHHHHHHhCC----H-HHHHHHhhcCcCCcHHHHHHHHHHHhccC-Cc---c--------------hHHHHHHHHHHHHH
Confidence 3444555545 1 22344445555688888888888876632 00 0 0100 0111111
Q ss_pred HHHHH----hcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----hhhHHHHHHHH
Q 007775 451 AFIYI----NLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH----VPSLISTAVVL 522 (590)
Q Consensus 451 a~~~~----~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~ 522 (590)
...+. .....+.|.+++....+..|+..-..+..|+++...|+.++|++.|++++.....- .-.++.+++++
T Consensus 236 ~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 236 VPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCH 315 (468)
T ss_pred HHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHH
Confidence 11111 34567889999999999999999999999999999999999999999988543322 34678999999
Q ss_pred HHcCCCchHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHhCCCCch-------HHHHHHHHHHhccc
Q 007775 523 RKLSDQSNAVIRSFLMAALRLDGMNSS-AWYNLGLFYKSQGTQSSK-------LEAAECFEAAASLE 581 (590)
Q Consensus 523 ~~~g~~~l~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~g~~~~~-------~~A~~~~~~al~l~ 581 (590)
.-+.+|+ +|..+|.+..+.+.-+.. ..+..|-++...|+ . ++|.+.|+++-.+.
T Consensus 316 ~~~~~w~--~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~---~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 316 MFQHDWE--EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR---EEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHchHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc---chhhhhhHHHHHHHHHHHHHHH
Confidence 9999999 999999999987655433 34556888999999 8 88888988886654
No 239
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.94 E-value=9.1e-06 Score=47.22 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=21.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007775 467 LSKSEAISSYSASKCHATGVLYEKKGLYKEAI 498 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 498 (590)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
No 240
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.91 E-value=0.025 Score=55.78 Aligned_cols=267 Identities=10% Similarity=-0.042 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHH-HcCChHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS-AQKRYEDAETILN 376 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~-~~g~~~~A~~~~~ 376 (590)
.+.+...|...+ ...|.-...|-..|..-.+.|..+.+.++|++.+.--|.+. ..|..+-..+. ..|+.+.-...|+
T Consensus 61 ~~~~r~~y~~fL-~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv-dlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 61 VDALREVYDIFL-SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV-DLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHH-hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 456667777777 77777777888888888999999999999999998888766 77766544443 4467777777788
Q ss_pred HHHhccC-CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccc----------------------c-cccc
Q 007775 377 AALDQTG-KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS----------------------D-KRFY 432 (590)
Q Consensus 377 ~a~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~----------------------~-~~~~ 432 (590)
+|..... +......|-........++++..-..+|++.++.-......+.. . ....
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 8877654 11223445555555556666666666666666542111100000 0 0000
Q ss_pred c--------c-----------------------------------------------------------ccccccchHHH
Q 007775 433 K--------G-----------------------------------------------------------SANHARSLELE 445 (590)
Q Consensus 433 ~--------~-----------------------------------------------------------~~~~~~~~~~~ 445 (590)
. . ...+..+.+..
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 0 0 12222333445
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCChhhHHHHHHHHHH
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID-PAHVPSLISTAVVLRK 524 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 524 (590)
.|......-...|+++.....|++++--.......|...+......|+.+-|-..+.++.++. |..+.+...-+.....
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 566666666666666666666666665555556666666666666666666666666555543 4445555555555566
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHH
Q 007775 525 LSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAA 571 (590)
Q Consensus 525 ~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~ 571 (590)
.|++. .|...+++..+..|+...+-.....+....|+ .+.+.
T Consensus 379 ~~n~~--~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~---~~~~~ 420 (577)
T KOG1258|consen 379 NGNFD--DAKVILQRIESEYPGLVEVVLRKINWERRKGN---LEDAN 420 (577)
T ss_pred hccHH--HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc---hhhhh
Confidence 66666 66666666666556665555555555555666 55555
No 241
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.91 E-value=0.00053 Score=66.28 Aligned_cols=105 Identities=18% Similarity=0.131 Sum_probs=92.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchH
Q 007775 453 IYINLSQWHDAEICLSKSEAISSYSAS-KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNA 531 (590)
Q Consensus 453 ~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~ 531 (590)
.+...|+...|+.++..++...|.... ...+++.++...|-.-+|-..+.+++.+....+-.++.+|.++..+.+.+
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~-- 693 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS-- 693 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH--
Confidence 344589999999999999998887643 47889999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 532 VIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 532 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
.|++.|+.++..+|+++..-..|-.+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999988776655544
No 242
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00012 Score=62.60 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAI--------SSYSA----------SKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
..++..-|+-++..|+|.+|...|+.|+.. .|.++ ..+.+...|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 678888899999999999999999988643 35443 346778888888888888888888888
Q ss_pred ccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 506 NIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
...|.+..+++..|.+....=+.. +|...|.++++++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~--eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEA--EAKADLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHH--HHHHHHHHHHhcChhhHHH
Confidence 888888888888888888777766 8888888888888865433
No 243
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.89 E-value=0.01 Score=57.83 Aligned_cols=141 Identities=21% Similarity=0.193 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-C-C----
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY----SASKCHATGVLYEKKGLYKEAIKAFRSALNID-P-A---- 510 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p-~---- 510 (590)
......|...+.+..+.|.++.|...+.++...++. .+.+....+.++...|+..+|+..++..+... . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 455778999999999999999999999998876522 46778888999999999999999998877611 0 0
Q ss_pred ---------------------C-------hhhHHHHHHHHHHc------CCCchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 007775 511 ---------------------H-------VPSLISTAVVLRKL------SDQSNAVIRSFLMAALRLDGMNSSAWYNLGL 556 (590)
Q Consensus 511 ---------------------~-------~~~~~~l~~~~~~~------g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~ 556 (590)
. ..++..+|...... +..+ ++...|.++++.+|....+|+.+|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSD--EILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHH--HHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 23455566666666 5555 8999999999999999999999998
Q ss_pred HHHHhCCCC--------------chHHHHHHHHHHhccccC
Q 007775 557 FYKSQGTQS--------------SKLEAAECFEAAASLEET 583 (590)
Q Consensus 557 ~~~~~g~~~--------------~~~~A~~~~~~al~l~p~ 583 (590)
.+...=... -...|+..|-+++...|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 FNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 876542100 024588999999998887
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.86 E-value=1.9e-05 Score=46.25 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 548 SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
+.+|+.+|.++..+|+ +++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD---YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCC---chHHHHHHHHHHHHCcCC
Confidence 3578888999999998 999999999999888864
No 245
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0057 Score=53.32 Aligned_cols=201 Identities=11% Similarity=0.099 Sum_probs=146.2
Q ss_pred cCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHh-HHH
Q 007775 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK-GAV 408 (590)
Q Consensus 331 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~ 408 (590)
..-..|+.+-..++.++|.+. .+|...-.++..++ +..+-++++.+.++.+| .+..+|...-.+....|++. .-+
T Consensus 57 E~S~RAl~LT~d~i~lNpAnY-TVW~yRr~iL~~l~~dL~~El~~l~eI~e~np--KNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANY-TVWQYRRVILRHLMSDLNKELEYLDEIIEDNP--KNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccc-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc--cchhHHHHHHHHHHHhcCcccchH
Confidence 344567778888899999988 88877777776654 57778888999988888 78888888888888888887 778
Q ss_pred HHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007775 409 ETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLY 488 (590)
Q Consensus 409 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 488 (590)
+..+.++..+ ..+..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|+..-.+.
T Consensus 134 ef~~~~l~~D----------------------aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi 191 (318)
T KOG0530|consen 134 EFTKLMLDDD----------------------AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVI 191 (318)
T ss_pred HHHHHHHhcc----------------------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEE
Confidence 8888888876 445678888888888888899999999999988777766766543222
Q ss_pred HH-cC-----CHHHHHHHHHHHhccCCCChhhHHHHHHHHHH-cC--CCchHHHHHHHHHHH-hhcCCCHHHHHHHHHHH
Q 007775 489 EK-KG-----LYKEAIKAFRSALNIDPAHVPSLISTAVVLRK-LS--DQSNAVIRSFLMAAL-RLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 489 ~~-~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g--~~~l~~A~~~~~~a~-~~~p~~~~~~~~l~~~~ 558 (590)
.. .| ..+.-+.+..+.+...|++..+|+.|.-++.. .| ... +......... +....+|..+-.+..+|
T Consensus 192 ~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s--~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 192 TNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDS--KVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred EeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCc--hHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 22 11 23455667778888999999999999888886 44 122 3444444444 33445566666666666
No 246
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=3.3e-05 Score=45.31 Aligned_cols=34 Identities=41% Similarity=0.626 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 548 SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
+.+|+.+|.++...|+ +++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~---~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGN---YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHCcCC
Confidence 4578888999999999 999999999999888875
No 247
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.013 Score=51.13 Aligned_cols=204 Identities=10% Similarity=0.014 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChH-HHHHHHH
Q 007775 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQ-RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE-DAETILN 376 (590)
Q Consensus 299 ~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~-~A~~~~~ 376 (590)
..|+.+-+.++ .++|.+..+|...-.+.... .+..+-++++.++++.+|.+. .+|...-.+....|++. .-++..+
T Consensus 60 ~RAl~LT~d~i-~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY-QvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 60 PRALQLTEDAI-RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY-QVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred HHHHHHHHHHH-HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch-hHHHHHHHHHHHhcCcccchHHHHH
Confidence 36777778888 88888888876665555443 457777888888889999988 88888888888888887 7788888
Q ss_pred HHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh
Q 007775 377 AALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN 456 (590)
Q Consensus 377 ~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 456 (590)
.++..+. .+..+|...--+...-+.++.-+.+..++++.+-.+...|.....+...... ...
T Consensus 138 ~~l~~Da--KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~----------------~~~ 199 (318)
T KOG0530|consen 138 LMLDDDA--KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKG----------------VIS 199 (318)
T ss_pred HHHhccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccC----------------Ccc
Confidence 8888776 6677787788888888889998999888888875443333322222111000 000
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHh-ccCCCChhhHHHHHHHH
Q 007775 457 LSQWHDAEICLSKSEAISSYSASKCHATGVLYEK-KG--LYKEAIKAFRSAL-NIDPAHVPSLISTAVVL 522 (590)
Q Consensus 457 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~ 522 (590)
.-..+.-+.+..+.+...|++..+|..|.-++.. .| ...+-.......+ ...-..+..+-.+..+|
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 0112344667778888999999999988888775 44 1223333333333 33334455555555555
No 248
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.82 E-value=0.035 Score=54.02 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC--CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhh-hc-----
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT-KT----- 424 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~----- 424 (590)
..|...+.+..+.|+++.|...+.++....+.. ..+.+....+.+....|+..+|+..++..+....... ..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 778888888888899988888888888765321 1466777888888888998999988888887322111 00
Q ss_pred ccccc----ccc--ccccccccchHHHHHHHHHHHHHhc------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007775 425 FSSDK----RFY--KGSANHARSLELEVWLDLAFIYINL------SQWHDAEICLSKSEAISSYSASKCHATGVLYEK 490 (590)
Q Consensus 425 ~~~~~----~~~--~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 490 (590)
..... ... .............++..+|...... +..+++...|.++.+..|....+|..+|..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 00000 000 0000111123345666666666666 677777777777777777777777666665543
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.82 E-value=0.007 Score=57.19 Aligned_cols=180 Identities=9% Similarity=-0.019 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHH---ccCHHHHHHHHHHHH
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST----NMRDLSILYRLSLEYAE---QRKLNAAHYYAKMLL 344 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l 344 (590)
.....+-.+|....+ |+.-+++.+..- .. -+..+.+.+..|.++.+ .|+.++|+..+..++
T Consensus 142 div~~lllSyRdiqd-----------ydamI~Lve~l~-~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 142 DIVINLLLSYRDIQD-----------YDAMIKLVETLE-ALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred hHHHHHHHHhhhhhh-----------HHHHHHHHHHhh-ccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 455566667888888 888888877765 54 34456777888888888 999999999999955
Q ss_pred -cccCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHH
Q 007775 345 -KLEGGSNLKGWLLMARILSAQ---------KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (590)
Q Consensus 345 -~~~p~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 414 (590)
...+.++ +++..+|.+|-.. ...++|+.+|.++.+..| +...-.+++.++...|...+...-.++.
T Consensus 210 ~~~~~~~~-d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~---~~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 210 ESDENPDP-DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP---DYYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred hccCCCCh-HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---cccchHHHHHHHHHcCCcccchHHHHHH
Confidence 4555666 9999999998642 357899999999999986 2233346677777777644443333332
Q ss_pred H-HHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCH
Q 007775 415 L-AALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSA 478 (590)
Q Consensus 415 l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 478 (590)
. ..+.-. + .........+....-.++.+..-.|++++|.+.++++++..|...
T Consensus 286 ~~~l~~ll----g-------~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 286 GVKLSSLL----G-------RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHH----H-------hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2 111000 0 000111123344455566667777777888777777777766544
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.80 E-value=0.0061 Score=57.59 Aligned_cols=173 Identities=15% Similarity=0.035 Sum_probs=121.9
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh---cCChHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN---LSQWHDA 463 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A 463 (590)
++++...+-..|....+|+.=+++.+.+-... . ..-+....+....|-++.+ .|+.++|
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p-~-----------------~~~~~~~~i~~~yafALnRrn~~gdre~A 201 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALP-T-----------------CDVANQHNIKFQYAFALNRRNKPGDREKA 201 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-c-----------------cchhcchHHHHHHHHHHhhcccCCCHHHH
Confidence 34556667777888888888777777655541 0 0013446677788888888 9999999
Q ss_pred HHHHHH-HHhcCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHH
Q 007775 464 EICLSK-SEAISSYSASKCHATGVLYEK---------KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVI 533 (590)
Q Consensus 464 ~~~~~~-a~~~~p~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A 533 (590)
+..+.. .....+.+++++..+|.+|-. ....++|+.+|+++.+.+|+ ...-.+++.++...|... +.
T Consensus 202 l~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~--~~ 278 (374)
T PF13281_consen 202 LQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDF--ET 278 (374)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcc--cc
Confidence 999999 555667789999999999843 22478999999999999965 345567777777777644 33
Q ss_pred HHHHHHHH--------hh----cCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 534 RSFLMAAL--------RL----DGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 534 ~~~~~~a~--------~~----~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
..-.++.. +. .-.+-...-.++.+..-.|+ +++|.+++++++.+.|.
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d---~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD---YEKAIQAAEKAFKLKPP 337 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCc
Confidence 32222221 11 11233444567888888999 99999999999998764
No 251
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.77 E-value=5.6e-05 Score=71.51 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcC
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLS 526 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 526 (590)
.-.-+.-.+..++++.|+..|.++++++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+|+..|......+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34456677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 527 DQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 527 ~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
++. +|...|+......|+++.+...+-.+-.
T Consensus 87 ~~~--~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFK--KALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHH--HHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 998 9999999999999999988877666543
No 252
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.031 Score=63.78 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCC--------
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID-PAH-------- 511 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~-------- 511 (590)
....++|...|.+....|+++.|..++-+|.+.. -+.+....|..+...|+-..|+..+++.++.+ |+.
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 4557899999999999999999999999888766 57889999999999999999999999998643 331
Q ss_pred --------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 512 --------VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 512 --------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
..+...++.-....++++.++-+++|..+.+..|.....++.+|..|
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 22445556666677887766788999999999997777777777544
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.75 E-value=0.0021 Score=64.26 Aligned_cols=179 Identities=16% Similarity=0.133 Sum_probs=129.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHH------HHHHHHHHH----HcCChHHHHHH
Q 007775 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG------WLLMARILS----AQKRYEDAETI 374 (590)
Q Consensus 305 ~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~------~~~la~~~~----~~g~~~~A~~~ 374 (590)
|.-++ .+-|. ....+..+..-.||-+.+++.+.++.+...-....+ |+....... .....+.|.++
T Consensus 180 f~L~l-SlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 180 FNLVL-SLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHH-HhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 44445 44443 334444555567999999999999877332221011 111111111 23467889999
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHH
Q 007775 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIY 454 (590)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 454 (590)
+....+..| +..-..+..|+++...|+.++|++.|++++..... -..-....+..++.++
T Consensus 256 L~~~~~~yP--~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~------------------~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 256 LEEMLKRYP--NSALFLFFEGRLERLKGNLEEAIESFERAIESQSE------------------WKQLHHLCYFELAWCH 315 (468)
T ss_pred HHHHHHhCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh------------------HHhHHHHHHHHHHHHH
Confidence 999999999 78888899999999999999999999998853211 1123356788999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCH-------HHHHHHHHHHhcc
Q 007775 455 INLSQWHDAEICLSKSEAISSYSAS-KCHATGVLYEKKGLY-------KEAIKAFRSALNI 507 (590)
Q Consensus 455 ~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~al~~ 507 (590)
..+.+|++|..++.+..+.+.-+.. ..+..|.|+...|+. ++|.++|+++-..
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999997766543 456678889999998 8888898887543
No 254
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.72 E-value=0.025 Score=58.06 Aligned_cols=293 Identities=15% Similarity=0.010 Sum_probs=184.7
Q ss_pred hHHHHHHHHHhhcCCCCCCChHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchh
Q 007775 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICG----EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (590)
Q Consensus 211 ~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~----~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 286 (590)
...|..+++.+.+ -.+......++.+++ ....+.+.|+.+++.+.+............+.+.+|.+|.....
T Consensus 228 ~~~a~~~~~~~a~----~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAK----LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHh----hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 4568888888762 233444444442222 23457788999998887720000000011377788888877542
Q ss_pred hccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcc---CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHH
Q 007775 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (590)
Q Consensus 287 ~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 363 (590)
.... ..+.|+.+|.++. .. .++.+.+.+|.++.... +...|.++|..+.+.. +. .+.+.++.+|.
T Consensus 304 ~~~~------d~~~A~~~~~~aA-~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~-~A~~~la~~y~ 371 (552)
T KOG1550|consen 304 VEKI------DYEKALKLYTKAA-EL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HI-LAIYRLALCYE 371 (552)
T ss_pred Cccc------cHHHHHHHHHHHH-hc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--Ch-HHHHHHHHHHH
Confidence 1000 2788999999987 43 56678889999988766 6789999999997654 44 78889988887
Q ss_pred Hc----CChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh-cCHhHHHHHHHHHHHHHhhhhhccccccccccccccc
Q 007775 364 AQ----KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANH 438 (590)
Q Consensus 364 ~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (590)
.- .+...|..++.++.+..+ +.+...++..+..- ++++.+...+....+..-..
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g~----~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~----------------- 430 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKGN----PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV----------------- 430 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHccC----hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH-----------------
Confidence 53 588999999999999873 33344455444332 77777777666655543110
Q ss_pred ccchHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCC
Q 007775 439 ARSLELEVWLDLAFIYIN----LSQWHDAEICLSKSEAISSYSASKCHATGVLYEKK----GLYKEAIKAFRSALNIDPA 510 (590)
Q Consensus 439 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~ 510 (590)
...+............. ..+...+...+.++.. ..++.+...+|.+|..- .+++.|...|.++....
T Consensus 431 -~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-- 505 (552)
T KOG1550|consen 431 -AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-- 505 (552)
T ss_pred -HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--
Confidence 00111111111111111 1245556666666543 45677888888888764 35999999999987765
Q ss_pred ChhhHHHHHHHHHHc-CCCchHHHHHHHHHHHhhcCC
Q 007775 511 HVPSLISTAVVLRKL-SDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 511 ~~~~~~~l~~~~~~~-g~~~l~~A~~~~~~a~~~~p~ 546 (590)
....+++|.++..- |-..+..|..++.++.+.+..
T Consensus 506 -~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 506 -AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred -hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 88899999998642 221123888999888876654
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0039 Score=55.68 Aligned_cols=154 Identities=19% Similarity=0.046 Sum_probs=92.9
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHH
Q 007775 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (590)
Q Consensus 314 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 393 (590)
|...+.-+..+.-....|++.+|...|..++...|++. .+...++.++...|+.+.|..++...-..... +.......
T Consensus 131 ~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~-~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a 208 (304)
T COG3118 131 PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS-EAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQA 208 (304)
T ss_pred ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc-hHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHH
Confidence 44455566777788889999999999999999999998 99999999999999999999888774333220 11111111
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007775 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI 473 (590)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 473 (590)
....+.+.....+.... ++.+..+ |++..+.+.++..+...|+.++|.+.+-..+..
T Consensus 209 ~i~ll~qaa~~~~~~~l-~~~~aad----------------------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 209 QIELLEQAAATPEIQDL-QRRLAAD----------------------PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHhcCCCHHHH-HHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22233333333222221 2222222 555666667777777777777776666655554
Q ss_pred CCC--CHHHHHHHHHHHHHcC
Q 007775 474 SSY--SASKCHATGVLYEKKG 492 (590)
Q Consensus 474 ~p~--~~~~~~~l~~~~~~~g 492 (590)
+.. +..+...+-.++...|
T Consensus 266 d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 266 DRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cccccCcHHHHHHHHHHHhcC
Confidence 322 2333334444444333
No 256
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.70 E-value=5.6e-05 Score=44.25 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
+|+.+|.++..+|++++|+..|+++++++|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344444444444444444444444444444
No 257
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.68 E-value=4.6e-05 Score=72.10 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 007775 483 ATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQG 562 (590)
Q Consensus 483 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 562 (590)
.-+.-.+..+.++.|+..|.++++++|+.+..+.+.+..+.+.+++. .|+.-+.++++.+|....+|+..|.+....+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~--~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG--GALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh--hHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677889999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccccCCCCC
Q 007775 563 TQSSKLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 563 ~~~~~~~A~~~~~~al~l~p~~~~~ 587 (590)
+ +.+|...|++...+.|++|.+
T Consensus 87 ~---~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 E---FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred H---HHHHHHHHHHhhhcCcCcHHH
Confidence 9 999999999999999998753
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.66 E-value=9.5e-05 Score=43.28 Aligned_cols=31 Identities=39% Similarity=0.565 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDPA 510 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 510 (590)
+++.+|.++...|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 259
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00038 Score=59.67 Aligned_cols=99 Identities=22% Similarity=0.213 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc------------------cCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALN------------------IDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
+..-|.-+++.|+|.+|...|+.++. ++....+.+.+++.|+...|++- ++++....++.
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y--evleh~seiL~ 258 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY--EVLEHCSEILR 258 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH--HHHHHHHHHHh
Confidence 34456777889999999999988763 22346778999999999999998 99999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 543 LDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 543 ~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
.+|++..+++..|.++...=+ ..+|..-|.++++++|.-
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn---~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWN---EAEAKADLQKVLELDPSL 297 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcChhh
Confidence 999999999999999999999 999999999999999964
No 260
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.61 E-value=0.00098 Score=55.23 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
..+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45667777888888888888888888888888888888888888888888888888887764
No 261
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.60 E-value=0.12 Score=53.69 Aligned_cols=275 Identities=11% Similarity=-0.033 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHH
Q 007775 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (590)
Q Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 274 (590)
.+.+..-+..+...|...+|++..-.+- +|......+..-.......+. +.....+++.-|...-...+...
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~----d~~~aa~lle~~~~~L~~~~~----lsll~~~~~~lP~~~l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG----DPEMAADLLEQLEWQLFNGSE----LSLLLAWLKALPAELLASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC----CHHHHHHHHHhhhhhhhcccc----hHHHHHHHHhCCHHHHhhCchHH
Confidence 5566666666777777777776644432 333222222111111122222 33444444444432111111344
Q ss_pred HHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCC--Ch-------HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 007775 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DL-------SILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (590)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~--~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~ 345 (590)
...+.......+ +.+|..+..++. ..-+. .. ...-..|.+....|++++|+++.+.++.
T Consensus 419 ll~aW~~~s~~r-----------~~ea~~li~~l~-~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 419 LLQAWLLASQHR-----------LAEAETLIARLE-HFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred HHHHHHHHHccC-----------hHHHHHHHHHHH-HHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444555556667 888888888776 33222 11 2233457778889999999999999998
Q ss_pred ccCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC----CchHHHHHHHHHHHHhcCH--hHHHHHHHHHH
Q 007775 346 LEGGSN----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQL--KGAVETYTHLL 415 (590)
Q Consensus 346 ~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l 415 (590)
.-|.+. ..+...++.+..-.|++++|..+..++.+..... -...+....+.++..+|+. .+....|...-
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~ 566 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIR 566 (894)
T ss_pred hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 766632 1567778889999999999999998888774211 1233444567778888833 33333333332
Q ss_pred HHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCHH---HHHHHHHHH
Q 007775 416 AALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI----SSYSAS---KCHATGVLY 488 (590)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~p~~~~---~~~~l~~~~ 488 (590)
...- ...|.........+.++...-+++.+..-....++. .|.... .++.++.+.
T Consensus 567 ~q~l------------------~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 567 EQHL------------------EQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HHHh------------------hhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 2211 111222222222222222222245544444444433 233221 235789999
Q ss_pred HHcCCHHHHHHHHHHHhcc
Q 007775 489 EKKGLYKEAIKAFRSALNI 507 (590)
Q Consensus 489 ~~~g~~~~A~~~~~~al~~ 507 (590)
...|++++|...+.++...
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 629 FLRGDLDKALAQLDELERL 647 (894)
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 9999999999888877654
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.54 E-value=0.083 Score=50.12 Aligned_cols=355 Identities=13% Similarity=-0.042 Sum_probs=196.0
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 007775 184 IEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG 263 (590)
Q Consensus 184 ~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~ 263 (590)
+.+-++.+|.+...|+.+..-+-.+|.+++-.+.++++. .+.|-.+.++.....--+ ..+++......|.+.+...-
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~--~pfp~~~~aw~ly~s~EL-A~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLS--SPFPIMEHAWRLYMSGEL-ARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhc--CCCccccHHHHHHhcchh-hhhhHHHHHHHHHHHHhhhc
Confidence 444568899999999999999999999999999999999 677775555533322111 23466566677777776433
Q ss_pred CCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHH---------HccCHH
Q 007775 264 DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYA---------EQRKLN 334 (590)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~---------~~g~~~ 334 (590)
+ . ..|...-. |.+.-........+.. .-+|-+..-.++ -.+|.....|...+.... ++.+.+
T Consensus 108 ~-l-----dLW~lYl~-YIRr~n~~~tGq~r~~-i~~ayefv~~~~-~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 108 N-L-----DLWMLYLE-YIRRVNNLITGQKRFK-IYEAYEFVLGCA-IFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred c-H-----hHHHHHHH-HHHhhCcccccchhhh-hHHHHHHHHhcc-cccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 2 1 12322211 2221111111111222 344554444445 567777777776665442 344556
Q ss_pred HHHHHHHHHHcccCCCcHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHhccCC-----C-----------
Q 007775 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSA-------------QKRYEDAETILNAALDQTGK-----W----------- 385 (590)
Q Consensus 335 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~a~~~~~~-----~----------- 385 (590)
.-...|.+++...-++....|...-..-.. .--|-.|...+++...+... +
T Consensus 179 ~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r 258 (660)
T COG5107 179 KIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR 258 (660)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc
Confidence 667788888765443332222221111110 01123344444333222100 0
Q ss_pred -----------------------------------------CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhc
Q 007775 386 -----------------------------------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (590)
Q Consensus 386 -----------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 424 (590)
-.+++|+.........++-+.|+....+.+...
T Consensus 259 ~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s------ 332 (660)
T COG5107 259 TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS------ 332 (660)
T ss_pred cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC------
Confidence 112222222223333334444444433333322
Q ss_pred ccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------------------CCC-CHH------
Q 007775 425 FSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI------------------SSY-SAS------ 479 (590)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------------------~p~-~~~------ 479 (590)
+.....++.+|....+-++-..+|+++.+- +|. .++
T Consensus 333 -------------------psL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~ 393 (660)
T COG5107 333 -------------------PSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRI 393 (660)
T ss_pred -------------------CchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHH
Confidence 335566677777666666666666655321 010 011
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH-HHHcCCCchHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 480 -----KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV-LRKLSDQSNAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 480 -----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
+|........+..-.+.|...|-++-+..-....++..-|.+ +...|++. -|-..|+--+...|+++..-+.
T Consensus 394 ~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~--ta~~ifelGl~~f~d~~~y~~k 471 (660)
T COG5107 394 NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRA--TAYNIFELGLLKFPDSTLYKEK 471 (660)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcc--hHHHHHHHHHHhCCCchHHHHH
Confidence 222233333444556778888888766542333344333333 44667887 8999999999999999877777
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 554 LGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 554 l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
.-..+...++ -+.|...|++++..
T Consensus 472 yl~fLi~ind---e~naraLFetsv~r 495 (660)
T COG5107 472 YLLFLIRIND---EENARALFETSVER 495 (660)
T ss_pred HHHHHHHhCc---HHHHHHHHHHhHHH
Confidence 7777888899 89999999977653
No 263
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.52 E-value=0.0023 Score=52.95 Aligned_cols=117 Identities=18% Similarity=0.075 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHc
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKL 525 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 525 (590)
.....+......++.+.++..+++++.+...+.-.-..- ..-.......++... ..+...++..+...
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLRELY------LDALERLAEALLEA 75 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 344446666777888888888888888764331100000 011111122222221 34566777777888
Q ss_pred CCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 526 SDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 526 g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
|+++ +|+..+++++..+|.+..+|..+..+|...|+ ..+|++.|+++..
T Consensus 76 ~~~~--~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~---~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYE--EALRLLQRALALDPYDEEAYRLLMRALAAQGR---RAEALRVYERYRR 124 (146)
T ss_dssp T-HH--HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHH
T ss_pred cCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHH
Confidence 8887 88888888888888888888888888888888 8888888877643
No 264
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0075 Score=54.55 Aligned_cols=104 Identities=18% Similarity=0.141 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
.+.-+..-|+-|++..+|..|+..|.+.++..- .+...++..|.+.+.+....|+|..|+.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc------------------~D~dlnavLY~NRAAa~~~l~NyRs~l~D 141 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC------------------ADPDLNAVLYTNRAAAQLYLGNYRSALND 141 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC------------------CCccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345566678888888889999999998888742 22345577888899998999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007775 467 LSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID 508 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 508 (590)
..+++.++|.+..+++.-+.|+....++++|..+++..+.++
T Consensus 142 cs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 142 CSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999888876654
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0075 Score=53.98 Aligned_cols=133 Identities=15% Similarity=0.005 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChh-hHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVP-SLISTAVVL 522 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~ 522 (590)
.+.-..-+.-....|++.+|...|..++...|.+..+...++.++...|+.+.|...+...-....+... .+......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3444555667788999999999999999999999999999999999999999999888764332222211 111222444
Q ss_pred HHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 523 RKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 523 ~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
.+..... +.. .+++.+..+|++..+.+.++..+...|+ .++|.+.+-..+..+-
T Consensus 214 ~qaa~~~--~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 214 EQAAATP--EIQ-DLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDR 267 (304)
T ss_pred HHHhcCC--CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcc
Confidence 4444444 332 3566677899999999999999999999 9999988877776543
No 266
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.43 E-value=0.21 Score=51.93 Aligned_cols=328 Identities=17% Similarity=0.090 Sum_probs=195.1
Q ss_pred HHHHHHHHhhcCCCCCCCC---cccccCCccccCcchHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHhcCCHHHH
Q 007775 105 QKEFAIFLLYCGGETCPPN---LRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW-DPSILDHLSFAFSIAGDLSSL 180 (590)
Q Consensus 105 ~~~~a~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 180 (590)
...++.++........++. ........|...|...+||...+.. +-|. ...+....+.-+...++....
T Consensus 327 H~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA-------~d~~~aa~lle~~~~~L~~~~~lsll 399 (894)
T COG2909 327 HHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAA-------GDPEMAADLLEQLEWQLFNGSELSLL 399 (894)
T ss_pred hHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhC-------CCHHHHHHHHHhhhhhhhcccchHHH
Confidence 4456666554443322222 1223344677888888998765321 1111 112233334445555565554
Q ss_pred HHHHHHHcC-CCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCCh-------HHHHHHHHHHhcCCCCHHHHH
Q 007775 181 ATQIEELLP-GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL-------PALLIASKICGEYPDLAEEGA 252 (590)
Q Consensus 181 ~~~~e~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~-------~~~~~~a~~~~~~~~~~~~A~ 252 (590)
......... .....+..-...+.......++.+|..++.++...-..|... ...-..+.+ .-..+++++|+
T Consensus 400 ~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~v-al~~~~~e~a~ 478 (894)
T COG2909 400 LAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQV-ALNRGDPEEAE 478 (894)
T ss_pred HHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHH-HHhcCCHHHHH
Confidence 444332210 111346677778888899999999999998887433443321 222223322 33567889999
Q ss_pred HHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh----CCCCh--HHHHHHHHH
Q 007775 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST----NMRDL--SILYRLSLE 326 (590)
Q Consensus 253 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~p~~~--~~~~~la~~ 326 (590)
+..+.++...|.+.......++..+|.+..-.|+ +++|..+...+. +. +.... .+....+.+
T Consensus 479 ~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~-----------~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~i 546 (894)
T COG2909 479 DLARLALVQLPEAAYRSRIVALSVLGEAAHIRGE-----------LTQALALMQQAE-QMARQHDVYHLALWSLLQQSEI 546 (894)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhhHHHHHhch-----------HHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999998777777789999999999999 999999988876 54 22222 334456778
Q ss_pred HHHccCHHHH--HHHHHHH----HcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----CCCCchH-HHHHHH
Q 007775 327 YAEQRKLNAA--HYYAKML----LKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT----GKWEQGE-LLRTKA 395 (590)
Q Consensus 327 ~~~~g~~~~A--~~~~~~~----l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~-~~~~la 395 (590)
+..+|+...| ...+... +...|.+. ......+.++...-+++.+..-....++.. |.+.... ....++
T Consensus 547 l~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~-f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 547 LEAQGQVARAEQEKAFNLIREQHLEQKPRHE-FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhcccch-hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 8888843333 3333222 23334433 333444444444434666666665555543 3222222 234889
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHH--HHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 396 KVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELE--VWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
.++...|+.++|.....++.....+.. .+.+.. +..........+|+.+.|.....+.
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~~-----------------~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNGQ-----------------YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCC-----------------CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 999999999999999999888753210 122222 2333334455688999888887774
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.015 Score=48.66 Aligned_cols=95 Identities=14% Similarity=0.017 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 482 HATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 482 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
..++..+...|++++|+..++.++....+. .-+-.+|+.+..+.|.++ +|+..+....... -.+..-...|.++
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D--~AL~~L~t~~~~~-w~~~~~elrGDil 169 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKAD--AALKTLDTIKEES-WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHH--HHHHHHhcccccc-HHHHHHHHhhhHH
Confidence 344555555555555555555555332221 223345555555555555 5555443221100 0112223345666
Q ss_pred HHhCCCCchHHHHHHHHHHhcccc
Q 007775 559 KSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 559 ~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
...|+ .++|+..|+++++..+
T Consensus 170 l~kg~---k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 170 LAKGD---KQEARAAYEKALESDA 190 (207)
T ss_pred HHcCc---hHHHHHHHHHHHHccC
Confidence 66666 5666666666655543
No 268
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00079 Score=60.59 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHH
Q 007775 443 ELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS----ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIST 518 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 518 (590)
.+..+..-|+-|++.++|..|+.+|.+.++..-.+ ...|.+.+.+....|+|..|+....+++.++|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 46677788999999999999999999999976555 45689999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
+.++..+.++. +|..+.+..++++
T Consensus 160 Akc~~eLe~~~--~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 160 AKCLLELERFA--EAVNWCEEGLQID 183 (390)
T ss_pred hHHHHHHHHHH--HHHHHHhhhhhhh
Confidence 99999999987 7887777665543
No 269
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.34 E-value=0.00036 Score=40.74 Aligned_cols=33 Identities=42% Similarity=0.614 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 549 SAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
.+|+.+|.+|..+|+ +++|..+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~---~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD---YEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCC
Confidence 467888888888888 888888888888888853
No 270
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.34 E-value=0.029 Score=53.24 Aligned_cols=165 Identities=14% Similarity=-0.010 Sum_probs=120.4
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHccC------------HHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHH
Q 007775 303 QALVSAARSTNMRDLSILYRLSLEYAEQRK------------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (590)
Q Consensus 303 ~~~~~a~~~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~ 370 (590)
.-|++.+ +.+|.|.++|..+....-..-. .+.-+.++++|++.+|++. ..+..+.....+..+.++
T Consensus 6 ~el~~~v-~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~-~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRV-RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE-RLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHH-HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHH
Confidence 3467778 8899999999988866544322 4566789999999999988 888888888889989999
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHHHH---hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHH
Q 007775 371 AETILNAALDQTGKWEQGELLRTKAKVQLV---QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVW 447 (590)
Q Consensus 371 A~~~~~~a~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (590)
..+-+++++..+| .+..+|......... .-.+++....|.+++............ ...........-..++
T Consensus 84 l~~~we~~l~~~~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~----~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 84 LAKKWEELLFKNP--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMT----SHPDLPELEEFMLYVF 157 (321)
T ss_pred HHHHHHHHHHHCC--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccc----cccchhhHHHHHHHHH
Confidence 9999999999998 778887665554443 235778999999998876433222100 0000001112234567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007775 448 LDLAFIYINLSQWHDAEICLSKSEAISS 475 (590)
Q Consensus 448 ~~la~~~~~~g~~~~A~~~~~~a~~~~p 475 (590)
..+.......|..+.|+..++-.++.+=
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 7778888899999999999999998763
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.041 Score=46.12 Aligned_cols=119 Identities=19% Similarity=0.091 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcccCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHhcCHhHHHHHH
Q 007775 335 AAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVETY 411 (590)
Q Consensus 335 ~A~~~~~~~l~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 411 (590)
+.....++....+|.+.. .+-..++..+...|++++|+..++.++....+. -...+-..++.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333444455555544331 334556777778888888888888877654310 11334457788888888888888777
Q ss_pred HHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007775 412 THLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY 476 (590)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 476 (590)
...... .-.+......|+++...|+-++|+..|++++...+.
T Consensus 150 ~t~~~~-----------------------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEE-----------------------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hccccc-----------------------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 644332 112334556678888888888888888888877644
No 272
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.21 Score=48.36 Aligned_cols=410 Identities=12% Similarity=0.000 Sum_probs=208.2
Q ss_pred HHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-hHHHHHHHHHhhcCCCCCC
Q 007775 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDPK 229 (590)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~p~ 229 (590)
..+..+.+.|+.++.......-+.+.+.+....|.+++...|++++.|..-|.-.+..+. .+.|..+|.+.+ +.+|+
T Consensus 95 r~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL--R~npd 172 (568)
T KOG2396|consen 95 RRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL--RFNPD 172 (568)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh--hcCCC
Confidence 345566788999888877777777779999999999999999999999999988777766 999999999999 78888
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcc--hhh-HHHHHHHHHHhhchhhccC----hHHHHHHHHHHH
Q 007775 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ--MES-TANCLLGISLSAQSKVAIT----DFDRATRQAKAL 302 (590)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~A~ 302 (590)
.+..+...-++-+. .. +-+..-++.+..+..+.+. ..+ .++.....+.....-.... ..+......+-.
T Consensus 173 sp~Lw~eyfrmEL~---~~-~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~ 248 (568)
T KOG2396|consen 173 SPKLWKEYFRMELM---YA-EKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQ 248 (568)
T ss_pred ChHHHHHHHHHHHH---HH-HHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHH
Confidence 77665433222110 01 0011111122211111100 000 0111111111000000000 000000011111
Q ss_pred H-HHHHHHHhhCCCChHHHHHHHHHHHHc-------------------cCHHHHHHHHHHHHcccCCCcHHHHHHHHHHH
Q 007775 303 Q-ALVSAARSTNMRDLSILYRLSLEYAEQ-------------------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (590)
Q Consensus 303 ~-~~~~a~~~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 362 (590)
+ .++... ...|.+|..|..++.-...- -+-+....+|+.+++.-|... .|.....++
T Consensus 249 k~i~d~~~-~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~s--m~e~YI~~~ 325 (568)
T KOG2396|consen 249 KNIIDDLQ-SKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTES--MWECYITFC 325 (568)
T ss_pred HHHHHHHh-ccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHH--HHHHHHHHH
Confidence 1 112222 44677877776665433210 112233455666655444322 222222221
Q ss_pred HH------cCChHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHhcCHhHH-HHHHHHHHHHHhhhhhccccccccccc
Q 007775 363 SA------QKRYEDAETILNAALDQTG-KWEQGELLRTKAKVQLVQGQLKGA-VETYTHLLAALQVQTKTFSSDKRFYKG 434 (590)
Q Consensus 363 ~~------~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 434 (590)
.. ......-..+++.+.+... .+..+.-+..+..++.......++ .......+..+ ...+........
T Consensus 326 lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s---~k~~~~kl~~~~- 401 (568)
T KOG2396|consen 326 LERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDS---GKMWQLKLQVLI- 401 (568)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcch---HHHHHHHHHHHH-
Confidence 11 1133444455555555432 113344444555555444433222 22221222111 000000000000
Q ss_pred ccccccchHHHHHHHHH-HHH--------------HhcCC-hHHHH--HHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHH
Q 007775 435 SANHARSLELEVWLDLA-FIY--------------INLSQ-WHDAE--ICLSKSEA-ISSYSASKCHATGVLYEKKGLYK 495 (590)
Q Consensus 435 ~~~~~~~~~~~~~~~la-~~~--------------~~~g~-~~~A~--~~~~~a~~-~~p~~~~~~~~l~~~~~~~g~~~ 495 (590)
.. ..+........ +.+ ...|+ ..... ..+..+.. ..|+....-..+-..+.+.|-+.
T Consensus 402 ---~s-~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~ 477 (568)
T KOG2396|consen 402 ---ES-KSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYK 477 (568)
T ss_pred ---hh-cchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchH
Confidence 00 00011000000 000 00122 11111 11111111 12333444445556677888899
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 007775 496 EAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFE 575 (590)
Q Consensus 496 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~ 575 (590)
+|...|.+...+.|-....+..+..+-..+...++.-+..+|+.++.....+++.|...-..-...|+ .+.+-..|.
T Consensus 478 ~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~---~en~~~~~~ 554 (568)
T KOG2396|consen 478 KARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGR---PENCGQIYW 554 (568)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCC---cccccHHHH
Confidence 99999999988888877777776666554433334489999999999888999999988888889999 999999999
Q ss_pred HHhcc
Q 007775 576 AAASL 580 (590)
Q Consensus 576 ~al~l 580 (590)
+|++.
T Consensus 555 ra~kt 559 (568)
T KOG2396|consen 555 RAMKT 559 (568)
T ss_pred HHHHh
Confidence 99874
No 273
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.26 E-value=0.34 Score=50.80 Aligned_cols=209 Identities=18% Similarity=0.067 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCC-------CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccc
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGK-------WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 426 (590)
.....+....-.+++..|...+..+...... .-.+.+++..|..+...|+.+.|...|.+..-.-+.....
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~-- 440 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANR-- 440 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhcc--
Confidence 3445566666778888888888877655321 1236677888888899999999999998443221100000
Q ss_pred ccccccccccccccchHHHHHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCCHHHHHHHHHHH-------HHcCCHH
Q 007775 427 SDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHD----AEICLSKSEAISSYSASKCHATGVLY-------EKKGLYK 495 (590)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~p~~~~~~~~l~~~~-------~~~g~~~ 495 (590)
.........-+..++..++...+.-.. +...++..-....+.+...+..+.+. ...-...
T Consensus 441 ---------~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n 511 (608)
T PF10345_consen 441 ---------KSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSN 511 (608)
T ss_pred ---------CCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccH
Confidence 000112223445566666666554333 44444433222112222222222211 1122334
Q ss_pred HHHHHHHHHhccC--C-CC----hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC---H-HHHH-----HHHHHHH
Q 007775 496 EAIKAFRSALNID--P-AH----VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN---S-SAWY-----NLGLFYK 559 (590)
Q Consensus 496 ~A~~~~~~al~~~--p-~~----~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~---~-~~~~-----~l~~~~~ 559 (590)
++...+.++++.. . ++ .-++..++..+. .|+.. +.......+....... . ..|. .+...+.
T Consensus 512 e~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~--e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~ 588 (608)
T PF10345_consen 512 EAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVG--EQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYE 588 (608)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHH--HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6666666665543 1 11 234556666666 67766 6655555566543322 3 3453 3456677
Q ss_pred HhCCCCchHHHHHHHHHHhc
Q 007775 560 SQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 560 ~~g~~~~~~~A~~~~~~al~ 579 (590)
..|+ .++|.....+.-.
T Consensus 589 ~~G~---~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 589 VQGD---RDKAEEARQQLDR 605 (608)
T ss_pred HcCc---HHHHHHHHHHHHH
Confidence 8899 9999988877644
No 274
>PF13041 PPR_2: PPR repeat family
Probab=97.24 E-value=0.00094 Score=43.15 Aligned_cols=44 Identities=14% Similarity=0.004 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 007775 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEF 108 (590)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 108 (590)
.++.+...|.+.|++++|+++|++|.+.|+.|+..++..+...+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45666788999999999999999999999999999998775544
No 275
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.22 E-value=0.00037 Score=62.95 Aligned_cols=93 Identities=16% Similarity=0.056 Sum_probs=85.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchH
Q 007775 452 FIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNA 531 (590)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~ 531 (590)
.-.+..|.+++|++.|..++.++|.....+...+.++.++++...|+..+..++.++|+...-+-..+.....+|++.
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e-- 199 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE-- 199 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH--
Confidence 334567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 007775 532 VIRSFLMAALRLDGM 546 (590)
Q Consensus 532 ~A~~~~~~a~~~~p~ 546 (590)
+|...+..+.+++-+
T Consensus 200 ~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999987654
No 276
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.21 E-value=0.045 Score=51.57 Aligned_cols=167 Identities=14% Similarity=0.056 Sum_probs=95.5
Q ss_pred HHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH--
Q 007775 327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ----KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV-- 400 (590)
Q Consensus 327 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~-- 400 (590)
....+++..|...+..+-... +. .+...++.++... .+..+|..+|+.+.+. ..+...+.+|.+|..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~--~~-~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG--DA-AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----GLAEALFNLGLMYANGR 123 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC--Ch-HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----ccHHHHHhHHHHHhcCC
Confidence 345677777777777775522 22 4666666666553 3566777777755443 345566667777765
Q ss_pred --hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHH
Q 007775 401 --QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLS-------QWHDAEICLSKSE 471 (590)
Q Consensus 401 --~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a~ 471 (590)
..+..+|..+|+++.+... +.-..+...++..|..-. +...|...|.++-
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~---------------------~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGN---------------------VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCC---------------------hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 3467777777777776531 110223566666665531 1225666666655
Q ss_pred hcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcC
Q 007775 472 AISSYSASKCHATGVLYEK----KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLS 526 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 526 (590)
... ++.+...+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...|
T Consensus 183 ~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 183 ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 543 45566666655543 2256666666666665544 55555566 444444
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.17 E-value=0.2 Score=46.54 Aligned_cols=132 Identities=22% Similarity=0.115 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhch-hhccChHHHHHHHHHHHHHHHHHHHhh----C---CCC-------hHHHHHHHHHHHHccCHH--
Q 007775 272 TANCLLGISLSAQS-KVAITDFDRATRQAKALQALVSAARST----N---MRD-------LSILYRLSLEYAEQRKLN-- 334 (590)
Q Consensus 272 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~a~~~~----~---p~~-------~~~~~~la~~~~~~g~~~-- 334 (590)
..++..|......+ + ++.|...++++. .. . ... ..++..++.+|...+..+
T Consensus 36 ~~~yn~G~~l~~~~~~-----------~~~a~~wL~~a~-~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDK-----------YEEAVKWLQRAY-DILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred HHHHHHHHHHHHcCCC-----------hHHHHHHHHHHH-HHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 45666666666666 6 777777777766 44 1 111 145777888898877655
Q ss_pred -HHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHhcCHhHHHHHHH
Q 007775 335 -AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVETYT 412 (590)
Q Consensus 335 -~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (590)
+|..+++.+-...|+.+ ..+.....++.+.++.+++.+.+.+++...+.+ .+..........+.. .....|...+.
T Consensus 104 ~ka~~~l~~l~~e~~~~~-~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld 181 (278)
T PF08631_consen 104 EKALNALRLLESEYGNKP-EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLD 181 (278)
T ss_pred HHHHHHHHHHHHhCCCCc-HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHH
Confidence 45556666666778877 777677777777899999999999999875421 222222222222222 33456777776
Q ss_pred HHHHH
Q 007775 413 HLLAA 417 (590)
Q Consensus 413 ~~l~~ 417 (590)
..+..
T Consensus 182 ~~l~~ 186 (278)
T PF08631_consen 182 YLLLN 186 (278)
T ss_pred HHHHH
Confidence 66654
No 278
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.78 Score=53.25 Aligned_cols=351 Identities=12% Similarity=0.021 Sum_probs=184.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCCCCCCChH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHH
Q 007775 200 ILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (590)
Q Consensus 200 ~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~-~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~ 278 (590)
.++.+-++.+.|.+|+.++++.- ....+.+.. ..+..-..+|...++++.-...... ....| .....-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~-~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~---------sl~~qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHR-STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP---------SLYQQI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc---------cHHHHH
Confidence 56677777788888888877742 122222221 2222222234444455332222221 11111 222222
Q ss_pred HHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHH
Q 007775 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (590)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 358 (590)
..+...|+ +..|..+|++++ +.+|+....+...-......|.+...+...+-.....++.. .-|..+
T Consensus 1457 l~~e~~g~-----------~~da~~Cye~~~-q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~-~~~~s~ 1523 (2382)
T KOG0890|consen 1457 LEHEASGN-----------WADAAACYERLI-QKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEV-DELNSL 1523 (2382)
T ss_pred HHHHhhcc-----------HHHHHHHHHHhh-cCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHH-HHHHHH
Confidence 33445566 788888888888 88888777777666677777777777776666655555444 444433
Q ss_pred H-HHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc-----------------------------CHhHHH
Q 007775 359 A-RILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG-----------------------------QLKGAV 408 (590)
Q Consensus 359 a-~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g-----------------------------~~~~A~ 408 (590)
+ .+.++.++++.-..... ..+. ....+. .+|.+..+.. .+..+.
T Consensus 1524 ~~eaaW~l~qwD~~e~~l~---~~n~--e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y 1597 (2382)
T KOG0890|consen 1524 GVEAAWRLSQWDLLESYLS---DRNI--EYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSY 1597 (2382)
T ss_pred HHHHHhhhcchhhhhhhhh---cccc--cchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHH
Confidence 2 33356666666555533 0000 111111 0222222221 111222
Q ss_pred HHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh---cCC----CCHHHH
Q 007775 409 ETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA---ISS----YSASKC 481 (590)
Q Consensus 409 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~p----~~~~~~ 481 (590)
++.-++.....-. ......... ....+...+..-|.+....=....+..+-+-.++++.- .+| .-.+.|
T Consensus 1598 ~~~~kLH~l~el~-~~~~~l~~~---s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1598 EILMKLHLLLELE-NSIEELKKV---SYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred HHHHHHHHHHHHH-HHHHHhhcc---CccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence 2221111111000 000000000 00011111122333333222222224444444444432 232 337789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc-CC----------C---
Q 007775 482 HATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD-GM----------N--- 547 (590)
Q Consensus 482 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~-p~----------~--- 547 (590)
...|++....|+++.|....-+|.+.. -+.+....|..+...|+.. .|+..+++.++.+ |+ .
T Consensus 1674 LqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~--~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDEL--NALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHH--HHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 999999999999999999999988776 4678899999999999998 9999999999653 22 1
Q ss_pred ---HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCCCCC
Q 007775 548 ---SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPVEPF 589 (590)
Q Consensus 548 ---~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~~f 589 (590)
..+...++......|+ -....-+..|..+.++.|....-.|
T Consensus 1750 ~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred hhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHcccccCcee
Confidence 1233444555555565 1134567889999999996665544
No 279
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.17 E-value=0.00021 Score=64.55 Aligned_cols=92 Identities=21% Similarity=0.177 Sum_probs=85.9
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCc
Q 007775 487 LYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSS 566 (590)
Q Consensus 487 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 566 (590)
-....|.+++|++.|..++.++|.....+...+.++.++++.. .|+.-+..+++++|+...-+-..|.....+|+
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~--~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--- 197 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN--AAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--- 197 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCc--hhhhhhhhhhccCcccccccchhhHHHHHhhc---
Confidence 3456788999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccccC
Q 007775 567 KLEAAECFEAAASLEET 583 (590)
Q Consensus 567 ~~~A~~~~~~al~l~p~ 583 (590)
|++|...+..+.+++-+
T Consensus 198 ~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 99999999999988643
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.092 Score=52.59 Aligned_cols=175 Identities=9% Similarity=0.010 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHH----------HHHHHHHHHccCHHHHHHHHH
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL----------YRLSLEYAEQRKLNAAHYYAK 341 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~ 341 (590)
+.|..++......-. ++.|...|-+.- .. + ..... ...+.+-.--|++++|.+.|-
T Consensus 693 rLWrllAe~Al~Kl~-----------l~tAE~AFVrc~-dY-~-Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLA-----------LDTAEHAFVRCG-DY-A-GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred HHHHHHHHHHHHHHh-----------hhhHhhhhhhhc-cc-c-chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence 578888776665555 777777776553 11 1 11111 223444455688899988876
Q ss_pred HHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhh
Q 007775 342 MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (590)
Q Consensus 342 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 421 (590)
.+-. .+ ....++.+.|++-...++++..-.-..+.....++..+|..+..+..+++|.++|.+.-...
T Consensus 759 d~dr---rD------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--- 826 (1189)
T KOG2041|consen 759 DADR---RD------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--- 826 (1189)
T ss_pred ccch---hh------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH---
Confidence 5421 11 22345566777777776666543322212235678889999999999999998887654331
Q ss_pred hhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007775 422 TKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAF 501 (590)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 501 (590)
+++.++....+|++-..+. ..-|++...+-.+|..+...|.-++|.+.|
T Consensus 827 ---------------------------~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 827 ---------------------------NQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ---------------------------hHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 2344444455554433222 233555555556666666666666666655
Q ss_pred HH
Q 007775 502 RS 503 (590)
Q Consensus 502 ~~ 503 (590)
-+
T Consensus 876 Lr 877 (1189)
T KOG2041|consen 876 LR 877 (1189)
T ss_pred Hh
Confidence 43
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.13 E-value=0.044 Score=44.73 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 523 (590)
...+..+..+-...++.+++...+..+--+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 44666777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 524 KLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
.+|+.+ =..+...+++..+ ++.+...... +....+
T Consensus 90 ~~~D~~---Wr~~A~evle~~~-d~~a~~Lv~~-Ll~~~~ 124 (160)
T PF09613_consen 90 ALGDPS---WRRYADEVLESGA-DPDARALVRA-LLARAD 124 (160)
T ss_pred HcCChH---HHHHHHHHHhcCC-ChHHHHHHHH-HHHhcc
Confidence 999976 4444555666555 4555543333 333433
No 282
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.08 E-value=0.27 Score=46.30 Aligned_cols=169 Identities=17% Similarity=0.087 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH----cC
Q 007775 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ----RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QK 366 (590)
Q Consensus 295 ~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~g 366 (590)
...+..+...+..+. . -.++.....++..|... .+..+|..+|+.+.+ ..++ .+.+.+|.+|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~-~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~-~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAA-E--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLA-EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhh-h--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccH-HHHHhHHHHHhcCCCccc
Confidence 344778888888876 3 23446788888888654 468889999995543 4455 788999999988 45
Q ss_pred ChHHHHHHHHHHHhccCCCCc-hHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHhhhhhcccccccccccccccccchHH
Q 007775 367 RYEDAETILNAALDQTGKWEQ-GELLRTKAKVQLVQGQLKGAVETY-THLLAALQVQTKTFSSDKRFYKGSANHARSLEL 444 (590)
Q Consensus 367 ~~~~A~~~~~~a~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (590)
+..+|..+|+++.+... .. ......++..|..-. ...+.... .+++..... .....++
T Consensus 128 d~~~A~~~~~~Aa~~g~--~~a~~~~~~l~~~~~~g~-~~~~~~~~~~~A~~~~~~-----------------aa~~~~~ 187 (292)
T COG0790 128 DLVKALKYYEKAAKLGN--VEAALAMYRLGLAYLSGL-QALAVAYDDKKALYLYRK-----------------AAELGNP 187 (292)
T ss_pred CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHcCh-hhhcccHHHHhHHHHHHH-----------------HHHhcCH
Confidence 99999999999999864 22 344778888887654 22222222 233333210 0113356
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 007775 445 EVWLDLAFIYIN----LSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKG 492 (590)
Q Consensus 445 ~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 492 (590)
.+...+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...|
T Consensus 188 ~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 788899988865 4588999999999998876 78888888 666666
No 283
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.03 E-value=0.0012 Score=40.70 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCC
Q 007775 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPE 50 (590)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 50 (590)
+.++...|.++...|++++|...+++++.+.++.++..||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 67889999999999999999999999999999988877774
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.01 E-value=0.0012 Score=38.54 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISS 475 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 475 (590)
+|..+|.+|...|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555444
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.99 E-value=0.00063 Score=40.21 Aligned_cols=31 Identities=39% Similarity=0.535 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 550 AWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 550 ~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
+|..||.+|...|+ +++|+++|++++.+.++
T Consensus 1 al~~Lg~~~~~~g~---~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD---YEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT----HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence 46778888888888 88888888886655443
No 286
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.97 E-value=0.093 Score=49.83 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH---cCChHH
Q 007775 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA---QKRYED 370 (590)
Q Consensus 294 ~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~---~g~~~~ 370 (590)
.....+.-+.+|++|+ +.+|.+...+..+-....+..+.++..+-+++++..+|++. ..|..+...... .-.++.
T Consensus 43 ~~a~~E~klsilerAL-~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~-~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 43 RRALAERKLSILERAL-KHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP-ELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHhccCcHHH
Confidence 3444778899999999 88999999999999999999999999999999999999988 888776655544 235777
Q ss_pred HHHHHHHHHhccCCC----------------CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 007775 371 AETILNAALDQTGKW----------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 371 A~~~~~~a~~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
....|.+++..-... .-..++..+.......|-.+.|+..++-.++.+
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 778877777542100 113456677778889999999999999999987
No 287
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.92 E-value=0.13 Score=45.44 Aligned_cols=217 Identities=13% Similarity=0.063 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHccc-----CCCcHHHHHHHHHHHHHcCCh
Q 007775 298 QAKALQALVSAARSTNMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSNLKGWLLMARILSAQKRY 368 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~la~~~~~~g~~ 368 (590)
.++|+..|++++ .+.+... .++-.+..++++.|++++-+..|.+++..- .+........+...-....+.
T Consensus 43 p~~Al~sF~kVl-elEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 43 PKEALSSFQKVL-ELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred HHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 789999999999 8887654 567788899999999999999998887321 111112333333333333444
Q ss_pred HHHHHHHHHHHhccCCCCchH----HHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhh--cccccccccccccccccch
Q 007775 369 EDAETILNAALDQTGKWEQGE----LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK--TFSSDKRFYKGSANHARSL 442 (590)
Q Consensus 369 ~~A~~~~~~a~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 442 (590)
+--...|+..++.-....+.. ....+|.+|...|+|.+-.+.+++.-........ ... ....
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k------------KGtQ 189 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK------------KGTQ 189 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh------------ccch
Confidence 444444444433221112222 2347899999999998888887776655432110 000 0112
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--HHHHHH----HHHHHHHcCCHHHHHHHHHHHhccC-----CCC
Q 007775 443 ELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS--ASKCHA----TGVLYEKKGLYKEAIKAFRSALNID-----PAH 511 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~----l~~~~~~~g~~~~A~~~~~~al~~~-----p~~ 511 (590)
-.++|..-...|..+.+...-..+|++++.+...- |.+... =|..+.+.|+|++|-..|-++++.. |..
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 24566666788888898888889999998775433 333222 2455678899999988888887643 322
Q ss_pred hh--hHHHHHHHHHHcCC
Q 007775 512 VP--SLISTAVVLRKLSD 527 (590)
Q Consensus 512 ~~--~~~~l~~~~~~~g~ 527 (590)
.. -+..++.++.+.|-
T Consensus 270 ttCLKYLVLANMLmkS~i 287 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSGI 287 (440)
T ss_pred hHHHHHHHHHHHHHHcCC
Confidence 22 24566777777653
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.88 E-value=0.38 Score=44.74 Aligned_cols=165 Identities=14% Similarity=0.007 Sum_probs=97.7
Q ss_pred HhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHh------cCCC-CHHHHHHHHHHHHHHc----CC---CC--cch
Q 007775 206 YGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG------EYPD-LAEEGATFASRALECL----GD---GC--DQM 269 (590)
Q Consensus 206 ~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~------~~~~-~~~~A~~~~~~~l~~~----~~---~~--~~~ 269 (590)
..+|+++.|..++.++-.... ..++.....++.+|+ ...+ .+++|..+++++.+.. +. .+ ..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 466777777777777752110 222222222332322 2334 7788888888888773 11 11 124
Q ss_pred hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC
Q 007775 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (590)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 349 (590)
...++..++.+|...+.. ...++|....+.+. ...|+.+..+...-.+..+.++.+++.+.+.+++..-+-
T Consensus 83 r~~iL~~La~~~l~~~~~--------~~~~ka~~~l~~l~-~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~ 153 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY--------ESVEKALNALRLLE-SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH 153 (278)
T ss_pred HHHHHHHHHHHHHcCCCh--------HHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc
Confidence 455778888888776651 12556777777776 677887877766666666689999999999999876542
Q ss_pred CcHHHHHHHHHHH--HHcCChHHHHHHHHHHHhc
Q 007775 350 SNLKGWLLMARIL--SAQKRYEDAETILNAALDQ 381 (590)
Q Consensus 350 ~~~~~~~~la~~~--~~~g~~~~A~~~~~~a~~~ 381 (590)
.. ..+......+ ........+...+...+..
T Consensus 154 ~e-~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 154 SE-SNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred cc-chHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 22 2222222222 1223445666776666654
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.068 Score=53.49 Aligned_cols=204 Identities=12% Similarity=-0.012 Sum_probs=114.7
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhccCC
Q 007775 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ----------KRYEDAETILNAALDQTGK 384 (590)
Q Consensus 315 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~ 384 (590)
.++..|..+|......-.++.|...|-+.-... . . .....++.++.+. |++++|.+.|-.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G-i-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~------ 760 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G-I-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA------ 760 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c-h-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc------
Confidence 356777777777777666666666665543221 1 1 2334444444332 4555555544332
Q ss_pred CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHH
Q 007775 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAE 464 (590)
Q Consensus 385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 464 (590)
+..+ .-..++.+.|+|-...++++..- ...+......+|.++|..+.....|++|.
T Consensus 761 -drrD---LAielr~klgDwfrV~qL~r~g~--------------------~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 761 -DRRD---LAIELRKKLGDWFRVYQLIRNGG--------------------SDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred -chhh---hhHHHHHhhhhHHHHHHHHHccC--------------------CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23345556666655554443211 01111333568888888888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 465 ICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 465 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
++|...-. .-+...++.....|++-.. ....-|++.+.+-.+|.++...|.-+ +|.+.|-+. ..
T Consensus 817 ~yY~~~~~--------~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~--qAV~a~Lr~--s~ 880 (1189)
T KOG2041|consen 817 KYYSYCGD--------TENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCD--QAVEAYLRR--SL 880 (1189)
T ss_pred HHHHhccc--------hHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHH--HHHHHHHhc--cC
Confidence 88876432 2345566666666665333 33345777778888888888888888 888776543 12
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 007775 545 GMNSSAWYNLGLFYKSQGTQSSKLEAAECFEA 576 (590)
Q Consensus 545 p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~ 576 (590)
|. +- -.....+++ |.+|.+.-++
T Consensus 881 pk---aA---v~tCv~LnQ---W~~avelaq~ 903 (1189)
T KOG2041|consen 881 PK---AA---VHTCVELNQ---WGEAVELAQR 903 (1189)
T ss_pred cH---HH---HHHHHHHHH---HHHHHHHHHh
Confidence 21 11 123345566 7777665543
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.80 E-value=0.17 Score=48.71 Aligned_cols=100 Identities=11% Similarity=-0.083 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CChhhHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSY-SASK-CHATGVLYEKKGLYKEAIKAFRSALNIDP-----AHVPSLI 516 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~ 516 (590)
..+.......+.+.|-+..|.++.+-.+.++|. ||-. ...+-....+.++++--++.++....... .-|..-+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 445666778889999999999999999999999 7655 44444455667788777777776544211 1245667
Q ss_pred HHHHHHHHcCCC---------------chHHHHHHHHHHHhhcC
Q 007775 517 STAVVLRKLSDQ---------------SNAVIRSFLMAALRLDG 545 (590)
Q Consensus 517 ~l~~~~~~~g~~---------------~l~~A~~~~~~a~~~~p 545 (590)
..+.++...++. + +|...+.+|+...|
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~--~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSE--SADEALQKAILRFP 224 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchh--HHHHHHHHHHHHhH
Confidence 888888888887 6 78888877776544
No 291
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.77 E-value=0.087 Score=50.63 Aligned_cols=150 Identities=16% Similarity=0.075 Sum_probs=108.7
Q ss_pred hhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc---------c-----cC------------CCc--HHHHHHHHHHH
Q 007775 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK---------L-----EG------------GSN--LKGWLLMARIL 362 (590)
Q Consensus 311 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---------~-----~p------------~~~--~~~~~~la~~~ 362 (590)
...|-+.+++..++.++..+|+...|.+++++++- . ++ .|- ..+.+.....+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999861 1 11 111 14566777888
Q ss_pred HHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccch
Q 007775 363 SAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSL 442 (590)
Q Consensus 363 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (590)
.+.|-+..|.++.+-.+.++|..+-..+...+=....+.++++--++.++........+ + ...
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~--------------~~~ 176 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---W--------------LSL 176 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---h--------------hhh
Confidence 99999999999999999999943334455555556667788887777777655421000 0 001
Q ss_pred HHHHHHHHHHHHHhcCCh---------------HHHHHHHHHHHhcCCCC
Q 007775 443 ELEVWLDLAFIYINLSQW---------------HDAEICLSKSEAISSYS 477 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~---------------~~A~~~~~~a~~~~p~~ 477 (590)
-+...+..+.++...++. ++|...+.+|+...|.-
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 134566777778888877 89999999999988753
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.76 E-value=0.0021 Score=37.06 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 550 AWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 550 ~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
+++.+|.++...|+ +++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~---~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGD---YDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCH---HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHHHHCcCC
Confidence 56777888888888 888888888888777764
No 293
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.67 E-value=0.029 Score=41.33 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC
Q 007775 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (590)
Q Consensus 302 ~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 349 (590)
+..+++.+ ..+|++..+.+.+|..+...|++++|++.+-.+++.+++
T Consensus 8 ~~al~~~~-a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAAL-AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHH-HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34445555 555555555555555555555555555555555555444
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.65 E-value=0.0031 Score=36.30 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNIDPA 510 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 510 (590)
++.+|.++...|++++|+..|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444444444445555444444444443
No 295
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.54 E-value=0.012 Score=52.56 Aligned_cols=76 Identities=18% Similarity=0.131 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
.-...+.-..+.|+.++|..+|+.++.+.|.+++++..+|.......+.-+|-.+|-+++.+.|.+.+++.+.+..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3344455566789999999999999999999999999999999999999999999999999999998887765543
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.34 Score=39.79 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=75.7
Q ss_pred HcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchH
Q 007775 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLE 443 (590)
Q Consensus 364 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (590)
+.++.++|+..|...-+.+-.....-+....+.+....|+...|+..|..+-...+. + .+..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-----------------P-~~~r 131 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-----------------P-QIGR 131 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-----------------c-chhh
Confidence 345566666666665554332122344556666677777777777777765544310 0 0111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSE-AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
-.+...-+.++...|-|++-....+..- ..+|-...+.-.||..-.+.|++..|.++|.+... +...+....+.+.+
T Consensus 132 d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 132 DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 2344455566667777776655544322 23344455566677777777777777777776654 33333333333333
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.54 E-value=0.16 Score=40.74 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHc
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKL 525 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 525 (590)
........-...++.+++...+..+--+.|+.+..-..-|.++...|+|++|+..++...+..+..+...-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 44445555566999999999999999999999999999999999999999999999999888888888888899999999
Q ss_pred CCCc
Q 007775 526 SDQS 529 (590)
Q Consensus 526 g~~~ 529 (590)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8875
No 298
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.50 E-value=0.035 Score=53.37 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCC-CchHHHHHHHHHHH
Q 007775 463 AEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSD-QSNAVIRSFLMAAL 541 (590)
Q Consensus 463 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~l~~A~~~~~~a~ 541 (590)
-...|+.+....+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-....+. .+ .|...|.+++
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~--saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIE--SARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchH--HHHHHHHHHh
Confidence 34566777777777788887777777777777777888888888888888888777777666665 44 7888888888
Q ss_pred hhcCCCHHHHHH
Q 007775 542 RLDGMNSSAWYN 553 (590)
Q Consensus 542 ~~~p~~~~~~~~ 553 (590)
+.+|+++..|..
T Consensus 168 R~npdsp~Lw~e 179 (568)
T KOG2396|consen 168 RFNPDSPKLWKE 179 (568)
T ss_pred hcCCCChHHHHH
Confidence 888888877654
No 299
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.85 Score=44.85 Aligned_cols=242 Identities=17% Similarity=0.110 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC--CcHHHHHHHHHHHHHcCChHHHHHHHH
Q 007775 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQKRYEDAETILN 376 (590)
Q Consensus 299 ~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 376 (590)
+...+.+.... ...|+++.....-+..+...|+.+.|+..++..++..-. .. ..++.++.++..+.+|.+|...+.
T Consensus 250 ~~~~~~Ll~~~-~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~-l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYR-KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKS-LMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHH-HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444555555 667998888888899999999988889999888771111 12 456678888888999999999999
Q ss_pred HHHhccCCCCchHHHHHHHHHHHH--------hcCHhHHHHHHHHHHHHHhhhhh-------cccccccccccccccccc
Q 007775 377 AALDQTGKWEQGELLRTKAKVQLV--------QGQLKGAVETYTHLLAALQVQTK-------TFSSDKRFYKGSANHARS 441 (590)
Q Consensus 377 ~a~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 441 (590)
...+... +.....-+..|.++.. .|+-++|-.+++.....-...+. .......+.........-
T Consensus 328 ~L~desd-WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~ 406 (546)
T KOG3783|consen 328 LLRDESD-WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASI 406 (546)
T ss_pred HHHhhhh-hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccc
Confidence 9888764 3333333333344322 23555555555544433221111 111111111111000000
Q ss_pred hHHHHHHHHHHHHHhcC--ChHHHHHHHHHHH---hc-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCC-
Q 007775 442 LELEVWLDLAFIYINLS--QWHDAEICLSKSE---AI-SSYS-ASKCHATGVLYEKKGLYKEAIKAFRSALNI---DPA- 510 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~---~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~- 510 (590)
.....+..++.++..-. ...+.. -++... +. ++++ .--+..+|.++...|+...|..+|...++. ...
T Consensus 407 ~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d 485 (546)
T KOG3783|consen 407 LLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTED 485 (546)
T ss_pred cccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccc
Confidence 00012233333333211 122222 111111 12 2222 123667899999999999999999887732 111
Q ss_pred ---ChhhHHHHHHHHHHcCC-CchHHHHHHHHHHHhhcCC
Q 007775 511 ---HVPSLISTAVVLRKLSD-QSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 511 ---~~~~~~~l~~~~~~~g~-~~l~~A~~~~~~a~~~~p~ 546 (590)
.|.+++.+|.++...|. .. ++..++.+|-+...+
T Consensus 486 ~w~~PfA~YElA~l~~~~~g~~~--e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 486 LWAVPFALYELALLYWDLGGGLK--EARALLLKAREYASD 523 (546)
T ss_pred cccccHHHHHHHHHHHhcccChH--HHHHHHHHHHhhccc
Confidence 26788999999999888 55 999999998876543
No 300
>PF13041 PPR_2: PPR repeat family
Probab=96.41 E-value=0.012 Score=37.91 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHH
Q 007775 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (590)
Q Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~ 234 (590)
|..+|+.+...+.+.|++++|.++|+++.+.+..|+.....
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 55667777777777777777777777777666666644433
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.38 E-value=0.0055 Score=36.13 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
|..+|.+|...|++++|+.+|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.33 E-value=0.13 Score=38.94 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 346 (590)
+-.+++.|.++. .+.|..+..++.+|.-+.....|++++.-.++++..
T Consensus 60 Ll~sve~~s~a~-~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 LLGSVECFSRAV-ELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhHHHHHHHh-ccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 557888889998 888888888888888777777788888888877754
No 303
>PRK10941 hypothetical protein; Provisional
Probab=96.29 E-value=0.014 Score=53.02 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 007775 479 SKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLF 557 (590)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~ 557 (590)
....++-.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+. .|...++..++..|+++.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~--~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEH--VALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 346677778888999999999999999999999988888999999999988 89999999999999888766544444
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.28 E-value=0.05 Score=41.06 Aligned_cols=46 Identities=13% Similarity=0.009 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 532 VIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 532 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
.+++.|.++..+.|..+..++.+|.-+....- |+++..--++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~---Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKY---YKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHH---HHHHHHHHHHHhcc
Confidence 67888888888899888888888877666666 88888888887765
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.19 E-value=0.079 Score=43.28 Aligned_cols=83 Identities=11% Similarity=-0.120 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 479 SKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
..+..+..+-...++.+++...+.-.--+.|+.+..-..-|+++...|++. +|+..|+.+.+..|..+.+--.++.|+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~--dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWD--DALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHH--HHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 446666777788899999999999888899999999999999999999999 999999999999999998888899999
Q ss_pred HHhCC
Q 007775 559 KSQGT 563 (590)
Q Consensus 559 ~~~g~ 563 (590)
...|+
T Consensus 89 ~~~~D 93 (160)
T PF09613_consen 89 YALGD 93 (160)
T ss_pred HHcCC
Confidence 88888
No 306
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.18 E-value=0.009 Score=33.95 Aligned_cols=33 Identities=39% Similarity=0.481 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 549 SAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
.+|..+|.++...|+ +++|..+|++++++.|++
T Consensus 2 ~~~~~~a~~~~~~~~---~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGD---YDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhh---HHHHHHHHHHHHccCCCC
Confidence 467788888888888 888888888888887753
No 307
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.18 E-value=0.13 Score=37.99 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=65.3
Q ss_pred HHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 007775 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (590)
Q Consensus 336 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 415 (590)
.+..+++.+..+|++. .+.+.++..+...|++++|++.+-.++..++.+++..+...+..++...|.-+.-...|++-+
T Consensus 7 ~~~al~~~~a~~P~D~-~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDL-DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3567788899999999 999999999999999999999999999999887788888899999999998776666666654
Q ss_pred H
Q 007775 416 A 416 (590)
Q Consensus 416 ~ 416 (590)
.
T Consensus 86 ~ 86 (90)
T PF14561_consen 86 A 86 (90)
T ss_dssp H
T ss_pred H
Confidence 4
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.15 E-value=0.022 Score=36.78 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHH
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 358 (590)
+.++.+|..+.+.|+|++|..+.+.+++..|++. .+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~-Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR-QAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH-HHHHHH
Confidence 3567777778888888888888888888888776 554433
No 309
>PRK10941 hypothetical protein; Provisional
Probab=96.15 E-value=0.05 Score=49.51 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTA 519 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 519 (590)
.....++-.+|.+.++++.|+.+.+.++.+.|+++.-+.-.|.+|.+.|.+..|...++..++..|+++.+-.-..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 3456677788999999999999999999999999999999999999999999999999999999999887654433
No 310
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.13 E-value=0.35 Score=48.28 Aligned_cols=216 Identities=13% Similarity=0.035 Sum_probs=115.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcc--------------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKL--------------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW 385 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~--------------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 385 (590)
|-.+|.-....=+++-|.+.|.++-.+ ....+ --..++.++...|++.+|.++|.+.-..+...
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P--~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAl 665 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP--NDLLLADVFAYQGKFHEAAKLFKRSGHENRAL 665 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhhhHHHHHHHHHHcCchhhHH
Confidence 555666666666667777666655321 11111 23467888888899999998887632211000
Q ss_pred ---CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHH
Q 007775 386 ---EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHD 462 (590)
Q Consensus 386 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 462 (590)
.+. -.+..+.-+...|..++-..+.++-.+-. .+..--...+..+...|+.++
T Consensus 666 EmyTDl-RMFD~aQE~~~~g~~~eKKmL~RKRA~WA-----------------------r~~kePkaAAEmLiSaGe~~K 721 (1081)
T KOG1538|consen 666 EMYTDL-RMFDYAQEFLGSGDPKEKKMLIRKRADWA-----------------------RNIKEPKAAAEMLISAGEHVK 721 (1081)
T ss_pred HHHHHH-HHHHHHHHHhhcCChHHHHHHHHHHHHHh-----------------------hhcCCcHHHHHHhhcccchhh
Confidence 011 12234444555555544433333322211 000001123566677777777
Q ss_pred HHHHHH----------HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHH
Q 007775 463 AEICLS----------KSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAV 532 (590)
Q Consensus 463 A~~~~~----------~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~ 532 (590)
|+...- -+-+++..+.+.+..++..+.+...+.-|-+.|.+.-. ...+..++...++++ +
T Consensus 722 Ai~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~--e 791 (1081)
T KOG1538|consen 722 AIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWD--E 791 (1081)
T ss_pred hhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccch--H
Confidence 765432 22233334445555666666666666667777665422 234556667777887 7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007775 533 IRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAA 577 (590)
Q Consensus 533 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~a 577 (590)
|....++.-+.- +.+++-.|..+.+..+ ++||-+.|.+|
T Consensus 792 AFalAe~hPe~~---~dVy~pyaqwLAE~Dr---FeEAqkAfhkA 830 (1081)
T KOG1538|consen 792 AFALAEKHPEFK---DDVYMPYAQWLAENDR---FEEAQKAFHKA 830 (1081)
T ss_pred hHhhhhhCcccc---ccccchHHHHhhhhhh---HHHHHHHHHHh
Confidence 776655433322 3456666666666666 77766666655
No 311
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.10 E-value=0.018 Score=51.50 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=62.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 007775 484 TGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLG 555 (590)
Q Consensus 484 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~ 555 (590)
.+.-..+.|+.++|..+|+.++.+.|+++.++..+|......++.- +|-.+|-+++.++|.+..++.+.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv--~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIV--EADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhH--hhhhhhheeeeeCCCchHHHhhhh
Confidence 3444567899999999999999999999999999999999888887 999999999999999988876654
No 312
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.09 E-value=0.72 Score=40.89 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=114.9
Q ss_pred cCCHHHHHHHHHHHcCCCCCch----HHHHHHHHHHHhCCChHHHHHHHHHhhcC---CCCCCChHHHHHHHHHHhcCCC
Q 007775 174 AGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLRTLLSG---SEDPKCLPALLIASKICGEYPD 246 (590)
Q Consensus 174 ~g~~~~a~~~~e~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~p~~~~~~~~~a~~~~~~~~ 246 (590)
..+.++|...|++.+...+... .++-.+..++++.|++++-.+.|++++.- ....+...-......-+.....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467888888888887665543 35667888999999999999988887620 0111111111111111111222
Q ss_pred CHHHHHHHHHHHHHHcCC-CCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCC----------
Q 007775 247 LAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR---------- 315 (590)
Q Consensus 247 ~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~---------- 315 (590)
..+--..+|+..+....+ ..+.+.-.....+|.+|...+. +.+-.+.+++.- .....
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e-----------~~kl~KIlkqLh-~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE-----------YTKLQKILKQLH-QSCQTEDGEDDQKKG 187 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH-----------HHHHHHHHHHHH-HHhccccCchhhhcc
Confidence 222333444443332221 1111222355678888988888 766666666554 32111
Q ss_pred --ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH-HH----HHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 007775 316 --DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL-KG----WLLMARILSAQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 316 --~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~----~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 383 (590)
-.+++..-...|..+.+..+-..+|++++.+...-+. .. .-.=|..+.+.|++++|-.-|-++++...
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 1144555567788888888888899999866433220 11 11224567778999999998888887653
No 313
>PF12854 PPR_1: PPR repeat
Probab=96.01 E-value=0.014 Score=33.76 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=17.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007775 158 EWDPSILDHLSFAFSIAGDLSSLATQIEE 186 (590)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~~~a~~~~e~ 186 (590)
++|..+|+.|...|++.|+.++|.+.|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45555666666666666666666665554
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.72 Score=37.99 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~ 345 (590)
.+.-.||....+.|++..|...|.++..
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444455555555555555555555443
No 315
>PF12854 PPR_1: PPR repeat
Probab=95.91 E-value=0.021 Score=33.06 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 007775 190 GIINRKERYHILALCYYGAGEDLVALNLLRTL 221 (590)
Q Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 221 (590)
+.++|..+|..+...|.+.|+.++|+++|+++
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34678999999999999999999999999986
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.88 E-value=1.8 Score=41.80 Aligned_cols=120 Identities=16% Similarity=0.090 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 377 (590)
...|-+-+..++ ...|.+|......+.+....|+|+.+...+..+-+.-.... .+...+.+.....|++++|...-.-
T Consensus 305 ~~aas~~~~~~l-r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~-~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 305 IIAASQQLFAAL-RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD-STLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred HHHHHHHHHHHH-HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc-hHHHHHHHhhhchhhHHHHHHHHHH
Confidence 555666667777 77888998888889999999999999988876655444444 5667777777888888888887777
Q ss_pred HHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhh
Q 007775 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (590)
Q Consensus 378 a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 421 (590)
++...- +++++...-+......|-++++...+++.+.++|..
T Consensus 383 ~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 383 MLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred Hhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 765443 455555445555555666777777777776666443
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.82 E-value=0.017 Score=32.72 Aligned_cols=30 Identities=37% Similarity=0.559 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
++..+|.++...|++++|+..++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 318
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.79 E-value=0.3 Score=42.98 Aligned_cols=93 Identities=22% Similarity=0.297 Sum_probs=61.9
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHH-------HHHHHHHHhc
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDA-------EICLSKSEAI 473 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-------~~~~~~a~~~ 473 (590)
...+++|++.|.-++-...-. .......+.++..+|.+|...|+.+.. ...|+++...
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~---------------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK---------------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 446778888888777654210 011123467889999999999996554 4444444443
Q ss_pred CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007775 474 SSY------SASKCHATGVLYEKKGLYKEAIKAFRSALNID 508 (590)
Q Consensus 474 ~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 508 (590)
... ...+.+.+|.+..+.|++++|.++|.+++...
T Consensus 155 e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 155 EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 221 14567888888888888888888888888653
No 319
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=95.72 E-value=0.021 Score=33.22 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 007775 66 VELLPELWKLADAPRETIMSYRRALLPCWNLD 97 (590)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 97 (590)
++.+...|.+.|++++|+.+|++|...|+.|+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 34556789999999999999999999988876
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.59 E-value=0.064 Score=34.67 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHH
Q 007775 515 LISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 515 ~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~ 552 (590)
++.+|..+.+.|+++ +|..+.+.+++.+|++..+..
T Consensus 4 lY~lAig~ykl~~Y~--~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYE--KARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HH--HHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHH--HHHHHHHHHHhhCCCcHHHHH
Confidence 444555555555555 555555555555555554443
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.57 E-value=0.075 Score=50.77 Aligned_cols=125 Identities=10% Similarity=-0.033 Sum_probs=99.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHH
Q 007775 455 INLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 455 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
...|+.-.|-+-+..++...|.+|......+.+....|+|+.+...+..+-..-.....+...+-.....+|+++ +|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~--~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR--EAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH--HHH
Confidence 456888888888888888899999888888999999999999988887665554445556777777888889988 888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 535 SFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
......+...-.++++..--+.....+|- +++|...+++.+.++|..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCChh
Confidence 88888877666677766655666667788 899999999999888753
No 322
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.22 Score=49.18 Aligned_cols=126 Identities=22% Similarity=0.116 Sum_probs=92.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHH
Q 007775 457 LSQWHDAEICLSKSEAISSYSASKCHA--TGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 457 ~g~~~~A~~~~~~a~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
.|...-++..+...+.++|.++..+.. +...+...+....+.-.+..++..+|++..+..+|+......|... .-+.
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~-~~~~ 122 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF-LALA 122 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH-HHHH
Confidence 344444666666667778888776433 3666667788888888888888889999888888888888777665 2344
Q ss_pred HHHHHHHhhcCCCHHHHHHH------HHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 535 SFLMAALRLDGMNSSAWYNL------GLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l------~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
.+.+.+....|++......+ +.....+|+ ..++.....++.++.|.+|.
T Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 123 DISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhh
Confidence 44444777788877665555 888888888 88888888888888887753
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.53 E-value=0.22 Score=42.36 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL 467 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 467 (590)
...+..+|..|.+.|+.++|++.|.++.+..... ......+..+..+....+++.....++
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~-------------------~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSP-------------------GHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH-------------------HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4567789999999999999999999877764211 233678888888899999999999888
Q ss_pred HHHHhcCCC--CHHH----HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007775 468 SKSEAISSY--SASK----CHATGVLYEKKGLYKEAIKAFRSALNI 507 (590)
Q Consensus 468 ~~a~~~~p~--~~~~----~~~l~~~~~~~g~~~~A~~~~~~al~~ 507 (590)
.++-..... ++.. ...-|..+...++|.+|-+.|-.+..-
T Consensus 97 ~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 97 EKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 887664322 2222 334466667788888888888776543
No 324
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.50 E-value=0.46 Score=36.23 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=64.5
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA-- 472 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-- 472 (590)
+.-...-|-|++|...++++++.....|..- .-....-+..++..|+..+..+|+|++++..-++++.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eE----------aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEE----------AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-------------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHh----------hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3445567889999999999998863221100 0011123466788899999999999998877766664
Q ss_pred -----cCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 473 -----ISSYSAS----KCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 473 -----~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
++.+... +.+..+..+...|+.++|+..|+.+-+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3333332 345567777778888888888776643
No 325
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.50 E-value=0.02 Score=49.01 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=39.6
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 488 YEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 488 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
..+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++ .|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~d--aAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFD--AAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHH--HHHHHHHHHHcCCcccc
Confidence 345566666667777777777776666777777766777766 66666777777666553
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.48 E-value=0.26 Score=41.98 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccc--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLE--GGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 381 (590)
.++..+|..|.+.|+.++|++.|.++.+.. +.+..+.+..+..+....+++.....++.++-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445556666666666666666666655432 2222244455555555555555555555554443
No 327
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.47 E-value=0.68 Score=40.78 Aligned_cols=75 Identities=11% Similarity=0.027 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHccCHHHHHHHHHH
Q 007775 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR------DLSILYRLSLEYAEQRKLNAAHYYAKM 342 (590)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 342 (590)
..+..+..++.+|...++ .......+..|+..|.++. ..... ...+.+.+|.++.+.|++++|.++|.+
T Consensus 116 ~~A~l~LrlAWlyR~~~~----~~~E~~fl~~Al~~y~~a~-~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~ 190 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGD----EENEKRFLRKALEFYEEAY-ENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSR 190 (214)
T ss_pred HHHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHHHHH-HhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344577788888877777 4556667889999999988 54322 236678889999999999999999999
Q ss_pred HHcccC
Q 007775 343 LLKLEG 348 (590)
Q Consensus 343 ~l~~~p 348 (590)
++....
T Consensus 191 vi~~~~ 196 (214)
T PF09986_consen 191 VIGSKK 196 (214)
T ss_pred HHcCCC
Confidence 986543
No 328
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.43 E-value=4 Score=42.56 Aligned_cols=397 Identities=12% Similarity=0.016 Sum_probs=202.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHH---HhCCChHHHHHHHHHhhcCCCCCCChHHH
Q 007775 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY---YGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (590)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~~l~~~~~p~~~~~~ 234 (590)
+.+...+..|...+.+.|++++....-.++....|..+..|.....-. ...++..++...|++++ .+-+.+..+
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal---~dy~~v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL---GDYNSVPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh---cccccchHH
Confidence 456667788889999999998766655555555667777776655433 34578889999999999 444444444
Q ss_pred HHHHHHHh------cCCCCHHHHHHHHHHHHHHcCCCCc--chhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHH
Q 007775 235 LIASKICG------EYPDLAEEGATFASRALECLGDGCD--QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (590)
Q Consensus 235 ~~~a~~~~------~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 306 (590)
...+...+ ...+.++.-...+.+++........ .-....+.-.-..|..... .++-+.++.
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~-----------~~qv~a~~~ 255 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE-----------QRQVIALFV 255 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHH
Confidence 44443332 2234566777888888875543221 1112233333344433333 445566666
Q ss_pred HHHHhhCCCChHH----HHHHH--HH-HHHccCHHHHHHH-------HHHHHcccCCCcHHHHHHHHHHHHHcCChHHHH
Q 007775 307 SAARSTNMRDLSI----LYRLS--LE-YAEQRKLNAAHYY-------AKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (590)
Q Consensus 307 ~a~~~~~p~~~~~----~~~la--~~-~~~~g~~~~A~~~-------~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 372 (590)
..+ .. |-+.++ |.... .. .....+++.|..- +++.++..|... ..|..+.......|....-.
T Consensus 256 ~el-~~-~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~-q~~~~yidfe~~~G~p~ri~ 332 (881)
T KOG0128|consen 256 REL-KQ-PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKD-QEWMSYIDFEKKSGDPVRIQ 332 (881)
T ss_pred HHH-hc-cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCchHHH
Confidence 555 33 222211 11111 11 1223344444443 333344444444 56777777777788887777
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHhhhhhccccccccccc------ccccccchHHH
Q 007775 373 TILNAALDQTGKWEQGELLRTKAKVQLV-QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKG------SANHARSLELE 445 (590)
Q Consensus 373 ~~~~~a~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 445 (590)
..++++....+ .+...|...+...-. .+-.+.+...+.+++...|-.-..+......+.. .+....+.+..
T Consensus 333 l~~eR~~~E~~--~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 333 LIEERAVAEMV--LDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred HHHHHHHHhcc--ccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 77777776665 445555544433211 1111222222222222221111111110000000 00000011111
Q ss_pred H---HHHHHHHHH-hcC------ChHHHHHHHHHHH-------hc-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhc
Q 007775 446 V---WLDLAFIYI-NLS------QWHDAEICLSKSE-------AI-SSYSASKCHATGVLYEK-KGLYKEAIKAFRSALN 506 (590)
Q Consensus 446 ~---~~~la~~~~-~~g------~~~~A~~~~~~a~-------~~-~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 506 (590)
. +.+....|. ..+ +++.-.+.|+.+. .. .......+...|.+... .++.+.+...++..+.
T Consensus 411 ~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 411 MTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 1 111111221 222 2222233333332 22 11123344555555443 5678888888887777
Q ss_pred cCCCChh-hHHHHHHHHHHcCCCchHHHHHHHHHHHhh--cCCC-HHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 007775 507 IDPAHVP-SLISTAVVLRKLSDQSNAVIRSFLMAALRL--DGMN-SSAWYNLGLFYKSQGTQSSKLEAAECFEAAA 578 (590)
Q Consensus 507 ~~p~~~~-~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~--~p~~-~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al 578 (590)
....... .|.....+-...|+.. .+..++++++.. +|++ -.++..+-......|. ++....+-.+.+
T Consensus 491 y~~~~iag~Wle~~~lE~~~g~~~--~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gt---l~~~~~~~~~~~ 561 (881)
T KOG0128|consen 491 YGGGSIAGKWLEAINLEREYGDGP--SARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGT---LESFDLCPEKVL 561 (881)
T ss_pred CCcchHHHHHHHHHhHHHHhCCch--hHHHHHHHHHhcCcCchhHHHHHHHHHHHHhcccc---HHHHhhhHHhhc
Confidence 6655555 7888888888889988 888888777753 2322 2344444555556677 777766665554
No 329
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.41 E-value=0.028 Score=50.41 Aligned_cols=77 Identities=8% Similarity=0.029 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCChhhHH
Q 007775 440 RSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHA-TGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLI 516 (590)
Q Consensus 440 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 516 (590)
.+.++..|...+..-.+.|.+.+--..|.++++..|.+.+.|.. -+.-+...++++.+...|.+++..+|+.|..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34444455444444444444444444555555555555444443 223334444455555555555555554444443
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.24 E-value=1.4 Score=43.84 Aligned_cols=159 Identities=14% Similarity=0.043 Sum_probs=87.7
Q ss_pred HHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhc
Q 007775 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (590)
Q Consensus 205 ~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 284 (590)
....|+++++....+..- .-|.-+........-++...|..+.|+.+.. + + ...+.| ....
T Consensus 271 av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-------D-~-----~~rFeL---Al~l 331 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVT-------D-P-----DHRFEL---ALQL 331 (443)
T ss_dssp HHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------H-----HHHHHH---HHHC
T ss_pred HHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcC-------C-h-----HHHhHH---HHhc
Confidence 345677777776665221 1233223333333344556667766665432 1 1 233433 2455
Q ss_pred hhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH
Q 007775 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (590)
Q Consensus 285 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 364 (590)
|+ ++.|.+. ....+++..|..+|.....+|+++-|.++|+++ .-+..+..+|..
T Consensus 332 g~-----------L~~A~~~------a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~---------~d~~~L~lLy~~ 385 (443)
T PF04053_consen 332 GN-----------LDIALEI------AKELDDPEKWKQLGDEALRQGNIELAEECYQKA---------KDFSGLLLLYSS 385 (443)
T ss_dssp T------------HHHHHHH------CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC---------T-HHHHHHHHHH
T ss_pred CC-----------HHHHHHH------HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh---------cCccccHHHHHH
Confidence 66 6667654 223457788999999999999999999999886 344566777888
Q ss_pred cCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 007775 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (590)
Q Consensus 365 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 415 (590)
.|+.+.-.++.+.+..... ++..-.++...|+.++.++++.+.=
T Consensus 386 ~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 386 TGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp CT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 8887766666666554432 2223345556688888777776543
No 331
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.12 E-value=0.04 Score=47.23 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=56.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007775 452 FIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH 511 (590)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 511 (590)
....+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345678899999999999999999999999999999999999999999999999999987
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.05 E-value=0.34 Score=38.93 Aligned_cols=81 Identities=11% Similarity=-0.021 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS 560 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 560 (590)
+......-...++.+++...+...--+.|+.+..-..-|+++...|++. +|+..|+...+..+..+...-.++.|+..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~--eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYD--EAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHH--HHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 4444455556899999999999888899999999999999999999999 99999999998888878777778888888
Q ss_pred hCC
Q 007775 561 QGT 563 (590)
Q Consensus 561 ~g~ 563 (590)
+|+
T Consensus 91 l~D 93 (153)
T TIGR02561 91 KGD 93 (153)
T ss_pred cCC
Confidence 777
No 333
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.99 E-value=2.7 Score=38.49 Aligned_cols=71 Identities=11% Similarity=-0.047 Sum_probs=41.4
Q ss_pred CCCchHHHHHHHHHHHhCCChHHHHHHHHHhh--------------cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007775 191 IINRKERYHILALCYYGAGEDLVALNLLRTLL--------------SGSEDPKCLPALLIASKICGEYPDLAEEGATFAS 256 (590)
Q Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------------~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~ 256 (590)
...+++.+..+|..+++.|++.+|...|-..- .....|.....+..++-+.+...++...|...+.
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34567788888888888888877775542211 0124455666666666666666677777777666
Q ss_pred HHHHH
Q 007775 257 RALEC 261 (590)
Q Consensus 257 ~~l~~ 261 (590)
.-.+.
T Consensus 166 ~f~~~ 170 (260)
T PF04190_consen 166 TFTSK 170 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 334
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.79 E-value=0.51 Score=35.99 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=50.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 454 YINLSQWHDAEICLSKSEAISSYS------------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 454 ~~~~g~~~~A~~~~~~a~~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
.+..|-|++|...++++......- ...+..|+..+...|+|++++..-.+++
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL---------------- 82 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL---------------- 82 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----------------
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----------------
Confidence 445566777777777666543211 2234555666666666666555444333
Q ss_pred HHHcCCCchHHHHHHHHHHHhhcCCCHHHH----HHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 522 LRKLSDQSNAVIRSFLMAALRLDGMNSSAW----YNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 522 ~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~----~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
.+|++-=+++.+....| ++.+..+...|+ .++|+..|+.+-+.
T Consensus 83 -------------~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr---~~eA~~~fr~agEM 129 (144)
T PF12968_consen 83 -------------RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGR---KEEALKEFRMAGEM 129 (144)
T ss_dssp -------------HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred -------------HHHhhccccccccchhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHH
Confidence 33333333344433333 455677777777 77777777776553
No 335
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.51 E-value=9 Score=41.91 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 007775 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (590)
Q Consensus 246 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~ 325 (590)
..++.|+..|+++....|...+.. ++.+..|.....+....... ..+++|+..|++.. ..|..|--|...|.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 560 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGY--EAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLH--GGVGAPLEYLGKAL 560 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccch--HHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhc--CCCCCchHHHhHHH
Confidence 467899999999999998865433 57788887776665522221 34889999998864 45667777889999
Q ss_pred HHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 326 EYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
+|.+.|++++-++++.-+++..|.++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999877
No 336
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.49 E-value=7.5 Score=40.93 Aligned_cols=331 Identities=11% Similarity=-0.028 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCc--chhhHH
Q 007775 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD--QMESTA 273 (590)
Q Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~ 273 (590)
...+.-+.-.+..|++..+.....++- ..|-.+..-+.. + ....+. ....-+...+...|+.+. .+....
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~---d~pL~~yl~y~~--L-~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~ 105 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLK---DYPLYPYLEYRQ--L-TQDLMN--QPAVQVTNFIRANPTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcc---CCCcHhHHHHHH--H-Hhcccc--CCHHHHHHHHHHCCCCchHHHHHHHH
Confidence 456777888889999988766665543 344322222211 1 112111 112244455566776552 111111
Q ss_pred HHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHH
Q 007775 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (590)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 353 (590)
...++ ..++ +..-+. .. ...|.+.......+......|+.++|.....++-......+ .
T Consensus 106 l~~La----~~~~-----------w~~~~~----~~-~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p-~ 164 (644)
T PRK11619 106 VNELA----RRED-----------WRGLLA----FS-PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLP-N 164 (644)
T ss_pred HHHHH----HccC-----------HHHHHH----hc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC-h
Confidence 11222 2233 333333 11 23477777777888888899999888888888766555555 6
Q ss_pred HHHHHHHHHHHcCChHHHHHH--HHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHH--HHHHhhhhhcccccc
Q 007775 354 GWLLMARILSAQKRYEDAETI--LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL--LAALQVQTKTFSSDK 429 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~--~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--l~~~~~~~~~~~~~~ 429 (590)
....+-..+...|........ +..++.. .+......+.... +.-.++ .++.. +..+|.+......
T Consensus 165 ~cd~l~~~~~~~g~lt~~d~w~R~~~al~~----~~~~lA~~l~~~l---~~~~~~--~a~a~~al~~~p~~~~~~~~-- 233 (644)
T PRK11619 165 ACDKLFSVWQQSGKQDPLAYLERIRLAMKA----GNTGLVTYLAKQL---PADYQT--IASALIKLQNDPNTVETFAR-- 233 (644)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHhc---ChhHHH--HHHHHHHHHHCHHHHHHHhh--
Confidence 666666666666655443322 2222221 2222222222221 111111 11111 1122221111100
Q ss_pred cccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 430 RFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS----ASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
.... +....-...++..-....+.+.|...+.+.....+-+ ..++..+|.-....+...+|..++..+.
T Consensus 234 ------~~~~-~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~ 306 (644)
T PRK11619 234 ------TTGP-TDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI 306 (644)
T ss_pred ------ccCC-ChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 0000 0001112223333445667788888888764444333 2234445544444433667788887665
Q ss_pred ccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 506 NIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
.... +...+.....+....++++ .+..++...-..........+.+|..+...|+ .++|...|+++..
T Consensus 307 ~~~~-~~~~~e~r~r~Al~~~dw~--~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~---~~~A~~~~~~~a~ 374 (644)
T PRK11619 307 MRSQ-STSLLERRVRMALGTGDRR--GLNTWLARLPMEAKEKDEWRYWQADLLLEQGR---KAEAEEILRQLMQ 374 (644)
T ss_pred cccC-CcHHHHHHHHHHHHccCHH--HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCC---HHHHHHHHHHHhc
Confidence 4322 2333444444555788887 77777766544344567788899999888999 9999999998754
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.48 E-value=9.2 Score=41.86 Aligned_cols=97 Identities=13% Similarity=-0.022 Sum_probs=75.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHcCCCCCc---hHHHHHHHHHHHh----CC---ChHHHHHHHHHhhcCCCCCCChHHHHH
Q 007775 167 LSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYG----AG---EDLVALNLLRTLLSGSEDPKCLPALLI 236 (590)
Q Consensus 167 l~~~~~~~g~~~~a~~~~e~~~~~~~~~---~~~~~~la~~~~~----~g---~~~~A~~~~~~~l~~~~~p~~~~~~~~ 236 (590)
.-.++.....|+.|...|.++-...|.. -++.+..|...+. .| .+++|+..|++.- ..|..+--++.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 557 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH---GGVGAPLEYLG 557 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc---CCCCCchHHHh
Confidence 3457778888999999998887666654 4566777766653 23 5888999998887 67777888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCCc
Q 007775 237 ASKICGEYPDLAEEGATFASRALECLGDGCD 267 (590)
Q Consensus 237 ~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 267 (590)
.| +.++..+++++-++.+.-+++..|.++.
T Consensus 558 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 558 KA-LVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 88 5577888999999999999999999874
No 338
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=94.31 E-value=0.093 Score=30.17 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 007775 66 VELLPELWKLADAPRETIMSYRRALLPCWNL 96 (590)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 96 (590)
++.+...+.+.|+++.|...|++|.+.|+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4556678999999999999999999987765
No 339
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.96 E-value=5.1 Score=36.92 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHH
Q 007775 532 VIRSFLMAALRLDGMNSSAWYNL 554 (590)
Q Consensus 532 ~A~~~~~~a~~~~p~~~~~~~~l 554 (590)
.|++.+.++++.+|..|..+..+
T Consensus 380 ~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHH
Confidence 46777888888888877665544
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.87 E-value=1.3 Score=34.83 Aligned_cols=78 Identities=17% Similarity=0.058 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHhc-cCCC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHH
Q 007775 478 ASKCHATGVLYEKKG---LYKEAIKAFRSALN-IDPA-HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~ 552 (590)
....+++++++.... +..+.+.+++..++ -.|+ .-+..+.|+..+.+.++|+ .++.+.+..++.+|++..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~--~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYS--KSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHH--HHHHHHHHHHhhCCCcHHHHH
Confidence 445666666665544 34556667777665 3332 2345667777777777777 777777777777777766655
Q ss_pred HHHHH
Q 007775 553 NLGLF 557 (590)
Q Consensus 553 ~l~~~ 557 (590)
..-.+
T Consensus 110 Lk~~i 114 (149)
T KOG3364|consen 110 LKETI 114 (149)
T ss_pred HHHHH
Confidence 43333
No 341
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=5.6 Score=39.87 Aligned_cols=74 Identities=14% Similarity=0.018 Sum_probs=35.6
Q ss_pred HHHHHHHHHcccCCCcHHHHHH--HHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHH
Q 007775 336 AHYYAKMLLKLEGGSNLKGWLL--MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (590)
Q Consensus 336 A~~~~~~~l~~~p~~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (590)
++..+...+..+|.++ ..+.. +...+...+....+.-.+...+..+| .+..+...++......|....+...+.
T Consensus 50 ~~~a~~~~~~~~~~~~-~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 50 AIYALLLGIAINDVNP-ELLLAAFLSILLAPLADSTLAFLAKRIPLSVNP--ENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred HHHHHHccCccCCCCH-HHHHHHHHHhhccccccchhHHHHHhhhHhcCc--ccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444444444555544 33211 23334444555555555555555555 455555555555555554444444443
No 342
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.74 E-value=0.16 Score=45.76 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=76.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHH-HHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIS-TAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
.|.++....|+++..|...+....+.|-+.+--..|.++++.+|.+++.|.. -+.-+...++++ .+...|.++++.+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~--s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIE--SSRAMFLKGLRMN 172 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHH--HHHHHHHhhhccC
Confidence 4456666788999999999988889999999999999999999999999976 566677889988 9999999999999
Q ss_pred CCCHHHHHHH
Q 007775 545 GMNSSAWYNL 554 (590)
Q Consensus 545 p~~~~~~~~l 554 (590)
|++|..|...
T Consensus 173 ~~~p~iw~ey 182 (435)
T COG5191 173 SRSPRIWIEY 182 (435)
T ss_pred CCCchHHHHH
Confidence 9999988653
No 343
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.74 E-value=2.1 Score=33.77 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHcc---CHHHHHHHHHHHHc-ccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHH
Q 007775 316 DLSILYRLSLEYAEQR---KLNAAHYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (590)
Q Consensus 316 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 390 (590)
.....++++.++.... +..+.+.+++..++ ..|....+..+.++..+.+.++|+.++.+.+..++..| ++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~--~n~Qa 107 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP--NNRQA 107 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC--CcHHH
Confidence 3467788888887654 45677889999886 66665547888999999999999999999999999988 55444
No 344
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.67 E-value=0.26 Score=47.92 Aligned_cols=105 Identities=13% Similarity=-0.056 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCChhhHHHH
Q 007775 442 LELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKG---LYKEAIKAFRSALNIDPAHVPSLIST 518 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l 518 (590)
...+-+..-|.--+..+....|+..|.+++...|.....+.+.+.++.+.+ +.-.|+.....+++++|....+++.|
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~l 451 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHH
Confidence 334444444544555667888999999999999999999999999888754 56677778888999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
+.++..++++. +|+.....+....|.+.
T Consensus 452 a~aL~el~r~~--eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 452 ARALNELTRYL--EALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHhhHH--HhhhhHHHHhhcCchhh
Confidence 99999999998 99998877777777543
No 345
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.65 E-value=0.17 Score=49.08 Aligned_cols=92 Identities=22% Similarity=0.142 Sum_probs=77.0
Q ss_pred HcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchH
Q 007775 490 KKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS-NAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKL 568 (590)
Q Consensus 490 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~ 568 (590)
..+....|+..|.+++...|.....+.+.+.++++.+=.. .-.|+.....+++++|....+|+.|+.++..+++ +.
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r---~~ 462 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR---YL 462 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh---HH
Confidence 3455778999999999999999999999999988765332 0156777778889999999999999999999999 99
Q ss_pred HHHHHHHHHhccccCC
Q 007775 569 EAAECFEAAASLEETA 584 (590)
Q Consensus 569 ~A~~~~~~al~l~p~~ 584 (590)
+|+.+...+....|++
T Consensus 463 eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 463 EALSCHWALQMSFPTD 478 (758)
T ss_pred HhhhhHHHHhhcCchh
Confidence 9999999888888854
No 346
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.63 E-value=0.9 Score=49.69 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHccCHHHHHH------HHHH-HHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC------CC
Q 007775 319 ILYRLSLEYAEQRKLNAAHY------YAKM-LLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG------KW 385 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~------~~~~-~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------~~ 385 (590)
-....+......|.+.+|.+ ++.. +-.+.|... ..+..++.++...|++++|+.+-.++.-... .+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~-~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVA-SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHH-HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 34566667777788887777 5553 334567777 8999999999999999999999877665431 22
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
+....+..++......++...|+..+.++....--. ..++.|.-..+..+++.++...++++.|+.
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls--------------~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS--------------SGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc--------------cCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence 456677788888888889999999999888875111 122457777788889999999999999999
Q ss_pred HHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 466 CLSKSEAISSY--------SASKCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 466 ~~~~a~~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
+.+.|.+.+.. ....+..+++.+...+++..|....+....
T Consensus 1079 ~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1079 YLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 99999885422 234566677777777777777766665543
No 347
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=7.3 Score=37.13 Aligned_cols=108 Identities=20% Similarity=0.120 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL 467 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 467 (590)
+..|+.+..+|...|+...-...+...+.... ...+....+...+.+-..|...+.|+.|....
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt----------------Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lv 232 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTAT----------------LRHDEEGQAVLINLLLRNYLHNKLYDQADKLV 232 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh----------------hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 44566677777777776666666665555431 11223444667777888899999999999888
Q ss_pred HHHHhc--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007775 468 SKSEAI--SSYS--ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH 511 (590)
Q Consensus 468 ~~a~~~--~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 511 (590)
.+..-- ..++ +..++.+|.+..-+++|..|.+++-+++...|++
T Consensus 233 sK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 233 SKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 776421 1111 4557789999999999999999999999999975
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.43 E-value=1.2 Score=38.11 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHH
Q 007775 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWL 448 (590)
Q Consensus 369 ~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (590)
++|...|-++-. .|..++++..+.+|..|. ..+.++|+..+.++++..+ +....+++++.
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~------------------~~~~~n~eil~ 182 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN------------------PDDNFNPEILK 182 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC------------------CCCCCCHHHHH
Confidence 444444444322 222344555555555554 3455556666666555542 11123355555
Q ss_pred HHHHHHHhcCChHHH
Q 007775 449 DLAFIYINLSQWHDA 463 (590)
Q Consensus 449 ~la~~~~~~g~~~~A 463 (590)
.|+.++...|+++.|
T Consensus 183 sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 183 SLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHhcchhhh
Confidence 555555555555554
No 349
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=93.37 E-value=0.18 Score=29.01 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCC
Q 007775 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (590)
Q Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~ 229 (590)
+|+.+...|.+.|++++|.++|+++...+..|+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 467777788888888888888888776555554
No 350
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=7.8 Score=37.11 Aligned_cols=130 Identities=13% Similarity=0.094 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCC---chHHH
Q 007775 459 QWHDAEICLSKSEAISSYSASKCHATGVLYEKKGL--YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQ---SNAVI 533 (590)
Q Consensus 459 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---~l~~A 533 (590)
-.++-+.+...+++.+|++..+|+.+..++.+.+. +..-+++.+++++.+|.+..+|...=.+....... . .+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~-~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE-KEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc-hhH
Confidence 45667788889999999999999999999998764 68889999999999999988887766665544433 3 256
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhC-C--CC------chHHHHHHHHHHhccccCCCCCCC
Q 007775 534 RSFLMAALRLDGMNSSAWYNLGLFYKSQG-T--QS------SKLEAAECFEAAASLEETAPVEPF 589 (590)
Q Consensus 534 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g-~--~~------~~~~A~~~~~~al~l~p~~~~~~f 589 (590)
+++..+++..++.|-.+|.....++...- + .+ -...-++.-..|+-.+|+|+...|
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~Wf 233 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWF 233 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceee
Confidence 77888999889999999998887776321 1 00 023445566677788999987754
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.34 E-value=0.15 Score=31.02 Aligned_cols=29 Identities=41% Similarity=0.438 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 549 SAWYNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
.++.++|.+|...|+ +++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGR---YEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh---cchhhHHHHHHHHH
Confidence 567889999999999 99999999998875
No 352
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.31 E-value=0.92 Score=49.62 Aligned_cols=171 Identities=16% Similarity=0.114 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
....+......|.+.+|.+ ..+.+....+.. ...+|.....+..++.++...|++++|+..-.++
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~--------------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka 999 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVM--------------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKA 999 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhh--------------hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccc
Confidence 4456666667778887777 555555432211 1223777889999999999999999999988877
Q ss_pred HhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCCChhhHHHHHHHHHHcCCCchHHHH
Q 007775 471 EAIS--------SYSASKCHATGVLYEKKGLYKEAIKAFRSALNI--------DPAHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 471 ~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
.-+. |+....+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++ .|+
T Consensus 1000 ~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d--~al 1077 (1236)
T KOG1839|consen 1000 CIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD--TAL 1077 (1236)
T ss_pred eeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH--HHH
Confidence 6543 344566888888888888988999888887653 3444555678888888889988 999
Q ss_pred HHHHHHHhhcC--------CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 535 SFLMAALRLDG--------MNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 535 ~~~~~a~~~~p--------~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
++.+.|..... .....+..+++.+...++ +..|....+....+.
T Consensus 1078 ~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~d---fr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1078 RYLESALAKNKKVLGPKELETALSYHALARLFESMKD---FRNALEHEKVTYGIY 1129 (1236)
T ss_pred HHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHH---HHHHHHHHhhHHHHH
Confidence 99999987432 234556677888888888 888777776665543
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.30 E-value=7.3 Score=38.80 Aligned_cols=127 Identities=17% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHH
Q 007775 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA 407 (590)
Q Consensus 328 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A 407 (590)
...++++++.+..... ++-|.-+..-...++..+.+.|.++.|+.+. .++.. .-.+..+.|+.+.|
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~----------~D~~~---rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV----------TDPDH---RFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS----------S-HHH---HHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc----------CChHH---HhHHHHhcCCHHHH
Confidence 3566777766655411 1122222145566677777777777776652 23333 23344667777777
Q ss_pred HHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007775 408 VETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVL 487 (590)
Q Consensus 408 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 487 (590)
.+..++ ..++..|..||...+.+|+++-|.++|+++-. +..+..+
T Consensus 338 ~~~a~~---------------------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lL 382 (443)
T PF04053_consen 338 LEIAKE---------------------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLL 382 (443)
T ss_dssp HHHCCC---------------------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHH
T ss_pred HHHHHh---------------------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHH
Confidence 655431 23356777778777778888777777776532 2334444
Q ss_pred HHHcCCHHHHHHHHHH
Q 007775 488 YEKKGLYKEAIKAFRS 503 (590)
Q Consensus 488 ~~~~g~~~~A~~~~~~ 503 (590)
|.-.|+.+.=.++.+.
T Consensus 383 y~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 383 YSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHCT-HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 5555554443333333
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.12 E-value=9.7 Score=37.57 Aligned_cols=188 Identities=15% Similarity=0.053 Sum_probs=113.1
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHH
Q 007775 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (590)
Q Consensus 313 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 392 (590)
.|-+...+..+..++.....+.-....+.+++...... .+++.++.+|... ..++-..++++..+.+- ++...-.
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~R 136 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGR 136 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHH
Confidence 34555666677777777777777778888888776553 5888999999888 56777888888888775 6777777
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
.++..|.+ ++-..+...|.+++...-.. .....--++|..+... -..+.+.-.....+.-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~----------------~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt 197 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPR----------------RQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQT 197 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcch----------------hhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHH
Confidence 78888777 88889999999988764100 0001112233333221 12223333333322222
Q ss_pred cCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 473 ISSY-SASK-CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 473 ~~p~-~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
.... -..+ +..+-.-|....++++|++.+...++.+..+..+.-++..-+..
T Consensus 198 ~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 198 KLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred hhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 1111 1112 22222344556677788888777777777666665555544443
No 355
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=11 Score=37.85 Aligned_cols=160 Identities=11% Similarity=-0.038 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhhC-----------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHc-----cc--------------
Q 007775 298 QAKALQALVSAARSTN-----------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK-----LE-------------- 347 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~-----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~-------------- 347 (590)
|++|...|.-++...+ |.+.+.+..++.+...+|+.+-|....++++= ..
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Confidence 7788888877762223 55568899999999999999998888888761 11
Q ss_pred --CCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHH-HHhcCHhHHHHHHHHHHHHHhhhh
Q 007775 348 --GGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ-LVQGQLKGAVETYTHLLAALQVQT 422 (590)
Q Consensus 348 --p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~~~~~ 422 (590)
|.+- ..+++.....+.+.|-+..|.++.+-.+.++|.. ++.....+.++| .+..+|.=-++.++..-..+
T Consensus 334 ~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e-DPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n---- 408 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE-DPLGILYLIDIYALRAREYQWIIELSNEPENMN---- 408 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC-CchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc----
Confidence 2221 0234445566778899999999999999999832 555444555544 44556665555555442221
Q ss_pred hcccccccccccccccccchHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCC
Q 007775 423 KTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQ---WHDAEICLSKSEAISSY 476 (590)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~ 476 (590)
.....|+ ...-..+|..|..... -..|...+.+|+...|.
T Consensus 409 -------------~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 409 -------------KLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred -------------cHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 0111122 2233456666666655 56788899999988773
No 356
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.78 Score=45.92 Aligned_cols=90 Identities=12% Similarity=-0.011 Sum_probs=54.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 451 AFIYINLSQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 451 a~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
|.-.++..+|..+++.|...+...|.+ ......+..||....+.|.|.++++++-+.+|.++-....+-.+...
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 444555666666666666666655443 33345566666666666666666666666666666665666666666
Q ss_pred cCCCchHHHHHHHHHHHh
Q 007775 525 LSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 525 ~g~~~l~~A~~~~~~a~~ 542 (590)
.|.-+ +|+........
T Consensus 441 E~~Se--~AL~~~~~~~s 456 (872)
T KOG4814|consen 441 EDKSE--EALTCLQKIKS 456 (872)
T ss_pred hcchH--HHHHHHHHHHh
Confidence 66665 66666555444
No 357
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=92.89 E-value=0.15 Score=28.43 Aligned_cols=28 Identities=7% Similarity=-0.110 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccC
Q 007775 66 VELLPELWKLADAPRETIMSYRRALLPC 93 (590)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 93 (590)
+..+...|.+.|++++|...|++|.+.|
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 4456678999999999999999998764
No 358
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.73 E-value=13 Score=37.90 Aligned_cols=181 Identities=15% Similarity=0.085 Sum_probs=94.4
Q ss_pred HHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHHccCHHHHHHHHHHHHc--ccCC
Q 007775 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM----RDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--LEGG 349 (590)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~ 349 (590)
.++..+...|+ +.+|.++|.+.- ..+. -..--.+..+.-+...|..++-..+.++-.+ .+-+
T Consensus 637 LlA~~~Ay~gK-----------F~EAAklFk~~G-~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k 704 (1081)
T KOG1538|consen 637 LLADVFAYQGK-----------FHEAAKLFKRSG-HENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK 704 (1081)
T ss_pred HHHHHHHhhhh-----------HHHHHHHHHHcC-chhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC
Confidence 44555566666 777777765432 1000 0001234455666666666555544444221 1111
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHH------HHHHhccCCC--CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhh
Q 007775 350 SNLKGWLLMARILSAQKRYEDAETIL------NAALDQTGKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (590)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 421 (590)
.+ ...+.++...|+.++|+.+. +-++++.... .+.+.+...+..+.+...+.-|-++|.++-..
T Consensus 705 eP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---- 776 (1081)
T KOG1538|consen 705 EP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---- 776 (1081)
T ss_pred Cc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence 12 12355666777777776653 1222221100 22334444555555555555555555543322
Q ss_pred hhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007775 422 TKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAF 501 (590)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 501 (590)
..+...+...++|.+|..+-++.-+.- +++++-.|+.+.+..++++|.+.|
T Consensus 777 --------------------------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 777 --------------------------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred --------------------------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHH
Confidence 233455677788888877666543332 456777777777888888887777
Q ss_pred HHHh
Q 007775 502 RSAL 505 (590)
Q Consensus 502 ~~al 505 (590)
.++-
T Consensus 828 hkAG 831 (1081)
T KOG1538|consen 828 HKAG 831 (1081)
T ss_pred HHhc
Confidence 6653
No 359
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.70 E-value=2.3 Score=31.71 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHcCChHHHHHHHHHHHhccCCCC-------chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHh
Q 007775 362 LSAQKRYEDAETILNAALDQTGKWE-------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (590)
Q Consensus 362 ~~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 419 (590)
..+.|++.+|.+.+.+.++...... ...+...++.+....|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3456777777777666665543111 134566788899999999999999999998864
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.47 E-value=12 Score=36.98 Aligned_cols=206 Identities=11% Similarity=-0.031 Sum_probs=135.7
Q ss_pred ccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcc
Q 007775 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (590)
Q Consensus 346 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 425 (590)
..|-+. ..+..+..++....+..-...++.+++..+ .+-..+..++.+|... ..++-...+++.++.+
T Consensus 61 ~~~l~d-~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~d------- 128 (711)
T COG1747 61 KQLLDD-SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD------- 128 (711)
T ss_pred hccccc-hHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-------
Confidence 345555 667777777777777788888899999887 4667888999999988 5677778888888876
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---C---HHHHHHHHHHHHHcCCHHHHHH
Q 007775 426 SSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY---S---ASKCHATGVLYEKKGLYKEAIK 499 (590)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~---~~~~~~l~~~~~~~g~~~~A~~ 499 (590)
-++...-..++..|.+ ++.+.+..+|.+++...-. + .++|..+-.. --.+.+.-+.
T Consensus 129 ---------------fnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~ 190 (711)
T COG1747 129 ---------------FNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLR 190 (711)
T ss_pred ---------------chhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHH
Confidence 5557777778887777 8899999999998864321 1 2334433221 1233444444
Q ss_pred HHHHHhccC-CCChhhHH-HHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-----------------
Q 007775 500 AFRSALNID-PAHVPSLI-STAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS----------------- 560 (590)
Q Consensus 500 ~~~~al~~~-p~~~~~~~-~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----------------- 560 (590)
...+.-+.. .....+.. .+-.-|....+++ +|+..+...++.+..+..+.-.+..-+..
T Consensus 191 l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~--eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i 268 (711)
T COG1747 191 LQKKIQTKLGEGRGSVLMQDVYKKYSENENWT--EAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNI 268 (711)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHhccccCHH--HHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcch
Confidence 333332211 11122222 2223455566777 99999999999888888777666555444
Q ss_pred --hCCCCchHHHHHHHHHHhccccCCC
Q 007775 561 --QGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 561 --~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
.|+ |+.+++.-|++.+..+..|-
T Consensus 269 ~~~~r--nf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 269 SQSGR--NFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hhccc--cHHHHHHHHHHHheeccCce
Confidence 122 38888888888887766553
No 361
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.46 E-value=0.29 Score=29.03 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhc
Q 007775 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFA 45 (590)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 45 (590)
+++|..+|-+-...++|++|++.|.+.|++..+..|
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 467888888888889999999999999999887754
No 362
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.06 E-value=1.4 Score=44.32 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
.....++.+|....+.+.|.+++++|-+.+|.++-....+-.+....|.-++|+........
T Consensus 395 K~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 395 KIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 34445555555555666666666666555555555555555555555555555555554443
No 363
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.06 E-value=2.1 Score=39.07 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
..++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999999999999999999999988755
No 364
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.05 E-value=1.7 Score=32.45 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=49.8
Q ss_pred HHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 007775 16 KAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (590)
Q Consensus 16 ~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 92 (590)
.-.---+.|+|.+|.+.+.+..|....... + .....+..++..++.++...|++++|+..++++++.
T Consensus 4 ~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~---~-------~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 4 RYLNALRSGDYSEALDALHRYFDYAKQSNN---S-------SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhccc---c-------hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333445679999999999999887654321 1 102235567777889999999999999999999987
No 365
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=91.85 E-value=0.36 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCC
Q 007775 197 RYHILALCYYGAGEDLVALNLLRTLLSGSE 226 (590)
Q Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 226 (590)
+|..+..++.+.|+++.|..+|+.+.+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 455666666666666666666666664333
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.76 E-value=0.46 Score=27.79 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHH--HHHHhccccCC
Q 007775 549 SAWYNLGLFYKSQGTQSSKLEAAEC--FEAAASLEETA 584 (590)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~~~~A~~~--~~~al~l~p~~ 584 (590)
+.|+.+|..+...|+ +++|++. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~k---y~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGK---YDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHhcccC
Confidence 456777888888888 8888888 44666666543
No 367
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=13 Score=35.73 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=99.0
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCHHH
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQ--WHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~ 480 (590)
-.++-+.+...+++.+ |....+|+....++.+.+. +..-+++.+++++.+|.+-.+
T Consensus 90 ~ld~eL~~~~~~L~~n----------------------pksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~ 147 (421)
T KOG0529|consen 90 LLDEELKYVESALKVN----------------------PKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHA 147 (421)
T ss_pred hhHHHHHHHHHHHHhC----------------------chhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccc
Confidence 4566677778888887 6668899999999987664 578889999999999999888
Q ss_pred HHHHHHHHHHcC----CHHHHHHHHHHHhccCCCChhhHHHHHHHHHHc------CC-Cc---hHHHHHHHHHHHhhcCC
Q 007775 481 CHATGVLYEKKG----LYKEAIKAFRSALNIDPAHVPSLISTAVVLRKL------SD-QS---NAVIRSFLMAALRLDGM 546 (590)
Q Consensus 481 ~~~l~~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------g~-~~---l~~A~~~~~~a~~~~p~ 546 (590)
|...-.+..... ...+-+++..+++.-++.+-.+|.....++... |+ +. +..-......|+-.+|+
T Consensus 148 W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~ 227 (421)
T KOG0529|consen 148 WHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPE 227 (421)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence 766555544333 346667888999988999999999888877632 31 11 23445556677788999
Q ss_pred CHHHHHHHHHHH
Q 007775 547 NSSAWYNLGLFY 558 (590)
Q Consensus 547 ~~~~~~~l~~~~ 558 (590)
+..+|+..-+.+
T Consensus 228 DqS~WfY~rWLl 239 (421)
T KOG0529|consen 228 DQSCWFYHRWLL 239 (421)
T ss_pred ccceeeehHHhh
Confidence 999998744433
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.64 E-value=11 Score=34.82 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHH
Q 007775 462 DAEICLSKSEAISSYSASKCH 482 (590)
Q Consensus 462 ~A~~~~~~a~~~~p~~~~~~~ 482 (590)
.|++.+.++.+.+|.-|..+.
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 477888889998887765543
No 369
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=12 Score=34.95 Aligned_cols=296 Identities=15% Similarity=0.058 Sum_probs=154.0
Q ss_pred HHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 007775 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (590)
Q Consensus 14 ~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 93 (590)
+..++......++++++..++.++..... +.+ +...-..-+.++..++.+|.+.|+.++=-.+.......=
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~------~~s---~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~ 78 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQG------ASS---DEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFL 78 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhcc------ccC---CHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 55666666777889999999998874221 110 012223356788889999999998877544333222110
Q ss_pred CCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHH-hhhcCCchhHHHHHHHHHH
Q 007775 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVA-LKRIEWDPSILDHLSFAFS 172 (590)
Q Consensus 94 ~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 172 (590)
......-.+.+.+.+-...+. .+.+. +.-+.+....+.-.. .++.--.-.+-..|+..|.
T Consensus 79 ~~v~KakaaKlvR~Lvd~~~~------------------~~~~~-~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~ 139 (411)
T KOG1463|consen 79 SSVSKAKAAKLVRSLVDMFLK------------------IDDGT-GDQIELCTECIEWAKREKRTFLRQSLEARLIRLYN 139 (411)
T ss_pred HHhhhHHHHHHHHHHHHHHcc------------------CCCCc-chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 001111112222222222111 11111 111222211110000 0000001123445778889
Q ss_pred hcCCHHHHHHHHHHHcC----CC--CCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHH----HHHHHHHHh
Q 007775 173 IAGDLSSLATQIEELLP----GI--INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA----LLIASKICG 242 (590)
Q Consensus 173 ~~g~~~~a~~~~e~~~~----~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~----~~~~a~~~~ 242 (590)
..++|.+|.......++ .+ +.-.++...-...|+...+..+|...+..+-.....--.++. .=+...+..
T Consensus 140 d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlh 219 (411)
T KOG1463|consen 140 DTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILH 219 (411)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhcccee
Confidence 99999998876654432 11 122455666778888899999998888776522211111211 112222333
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCCcchhh-HHHHHHHHHHhhchhhccChHHHHHHHHHH--HHHHHHHHHhhCCCChHH
Q 007775 243 EYPDLAEEGATFASRALECLGDGCDQMES-TANCLLGISLSAQSKVAITDFDRATRQAKA--LQALVSAARSTNMRDLSI 319 (590)
Q Consensus 243 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A--~~~~~~a~~~~~p~~~~~ 319 (590)
....++.-|..+|-++++-...-.+...+ .++-++-.|-.+.+. .++- +-.-+.++ +....+.++
T Consensus 220 a~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~-----------~ddv~~lls~K~~l-~y~g~~i~A 287 (411)
T KOG1463|consen 220 AAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL-----------PDDVAALLSAKLAL-KYAGRDIDA 287 (411)
T ss_pred ecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC-----------HHHHHHHHhhHHHH-hccCcchHH
Confidence 34477889999999998865543322111 123333333333333 3333 33334556 556667788
Q ss_pred HHHHHHHHHH--ccCHHHHHHHHHHHHcccCC
Q 007775 320 LYRLSLEYAE--QRKLNAAHYYAKMLLKLEGG 349 (590)
Q Consensus 320 ~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~ 349 (590)
+...+..+.+ ..+|+.|+.-|..-+..+|-
T Consensus 288 mkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 288 MKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 8888887754 35788888888777766653
No 370
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.57 E-value=0.31 Score=26.02 Aligned_cols=21 Identities=19% Similarity=-0.007 Sum_probs=9.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAF 501 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~ 501 (590)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 334444444444444444443
No 371
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=18 Score=36.39 Aligned_cols=157 Identities=11% Similarity=0.010 Sum_probs=92.7
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhh-cccccccccccccccccchHHH---HHHHHHHHHHhcCChH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK-TFSSDKRFYKGSANHARSLELE---VWLDLAFIYINLSQWH 461 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~ 461 (590)
.+.+.+..++.+...+|+.+-|....++++=....... .+....-.+ +..-..|.+-. +.+.....+.+.|-+.
T Consensus 282 YHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c--RL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 282 YHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC--RLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc--cCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 55677788888888888888888887777643211100 000000000 01111133322 3444456677899999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH-----hccCCCChhhHHHHHHHHHHcCCC-chHHH
Q 007775 462 DAEICLSKSEAISSY-SASKCHATGVLYE-KKGLYKEAIKAFRSA-----LNIDPAHVPSLISTAVVLRKLSDQ-SNAVI 533 (590)
Q Consensus 462 ~A~~~~~~a~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~l~~~~~~~g~~-~l~~A 533 (590)
.|.++.+-.++++|. +|.....+..+|. +..+|+=-++.++.. +..-|+.+ .-..++..|...... +-..|
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHH
Confidence 999999999999998 7777666655553 445565555555543 23345432 334455555555442 12368
Q ss_pred HHHHHHHHhhcC
Q 007775 534 RSFLMAALRLDG 545 (590)
Q Consensus 534 ~~~~~~a~~~~p 545 (590)
...+.+|+...|
T Consensus 439 ~~~l~qAl~~~P 450 (665)
T KOG2422|consen 439 LNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHhCc
Confidence 888888888776
No 372
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.07 E-value=15 Score=35.38 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=62.5
Q ss_pred HHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcC-----CCCCchHHHHHHHHHHHhCCChH-HHHHHHHHhhc-
Q 007775 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP-----GIINRKERYHILALCYYGAGEDL-VALNLLRTLLS- 223 (590)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~-----~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~- 223 (590)
.++..+..+|..++|.+..+..+.|+|+.+...+-+++. +..+....++.+...+.+.++.. -|..++..+..
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 445556678999999999999999999988877765543 22234456666667777766654 35555555542
Q ss_pred ---CC---CCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 007775 224 ---GS---EDPKCLPALLIASKICGEYPDLAEEGAT 253 (590)
Q Consensus 224 ---~~---~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 253 (590)
.. ..|.+.........+|+ ...+.+-|..
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~-~l~d~~LA~~ 377 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICS-SLRDLELAYQ 377 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHH-HhhhHHHHHH
Confidence 11 23444444444555666 4434433433
No 373
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=1.5 Score=39.48 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS 514 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 514 (590)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|+..+...+...|+++.+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 33444556666777777777777777777777666677777777777777777777666666666544
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.74 E-value=10 Score=32.69 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 007775 442 LELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY----SASKCHATGVLYEKKGLYKEAI 498 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 498 (590)
.+++....+|..|. ..+.++|+.++-+++++.+. +++++..|+.++.++|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45777777777776 56678888888888876543 3777888888888888887764
No 375
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=0.58 Score=42.01 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
..++=..+...++++.|....++.+.++|+++.-+.-.|.+|.++|.+. -|+..++..++..|+++.+-..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~--vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYH--VALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCch--hhHHHHHHHHHhCCCchHHHHH
Confidence 4455566778889999999999999999999888888999999999988 8999998888888888765443
No 376
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.54 E-value=0.4 Score=25.58 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHH
Q 007775 549 SAWYNLGLFYKSQGTQSSKLEAAECFE 575 (590)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~~~~A~~~~~ 575 (590)
.+...+|.++...|+ +++|...++
T Consensus 2 ~a~~~la~~~~~~G~---~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGD---PDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHh
Confidence 355667777777777 777776664
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.49 E-value=14 Score=33.90 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCchHHHHHHHHHHHHhcCHhHHHHHHHH
Q 007775 385 WEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (590)
Q Consensus 385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (590)
..++..+..+|..+.+.|++.+|..+|-.
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 46788999999999999999988887753
No 378
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=2.6 Score=39.97 Aligned_cols=141 Identities=16% Similarity=0.083 Sum_probs=93.3
Q ss_pred HHHHHHHH--HHHHhcCChHHHHHHHHHHHhc-CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----
Q 007775 444 LEVWLDLA--FIYINLSQWHDAEICLSKSEAI-SSYS--------ASKCHATGVLYEKKGLYKEAIKAFRSALNI----- 507 (590)
Q Consensus 444 ~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~-~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 507 (590)
..+|..+- ..+..++++.+|..+-+..+.. .-.+ ...|+.+..++...|+...-...+...+..
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 34444333 3344568889988877665432 1111 455788888888888866655555444332
Q ss_pred CC-CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh--hcCCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 508 DP-AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR--LDGMN--SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 508 ~p-~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~--~~p~~--~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
+. ......+.+-..|...+.++ .|.....+..- ...++ ....+.+|.+..-+++ |..|.++|-+|+...|
T Consensus 204 d~e~qavLiN~LLr~yL~n~lyd--qa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld---YssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYD--QADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD---YSSALEYFLQALRKAP 278 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHH--HHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc---hhHHHHHHHHHHHhCc
Confidence 21 22445667778888888888 88887766642 11222 3456778999999999 9999999999999999
Q ss_pred CCCCCCC
Q 007775 583 TAPVEPF 589 (590)
Q Consensus 583 ~~~~~~f 589 (590)
.+...-|
T Consensus 279 q~~alGf 285 (493)
T KOG2581|consen 279 QHAALGF 285 (493)
T ss_pred chhhhhH
Confidence 8654433
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.00 E-value=1.5 Score=40.04 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Q 007775 478 ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
..++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+.. .|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~--~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQS--AAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCch--HHHHHHHHHHHH
Confidence 5667788888888888888888888888888888888888888888888888 888888776553
No 380
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=17 Score=33.96 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=113.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHc----ccCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCCchHH
Q 007775 321 YRLSLEYAEQRKLNAAHYYAKMLLK----LEGG-SNLKGWLLMARILSAQKRYEDAETILNAALDQT-----GKWEQGEL 390 (590)
Q Consensus 321 ~~la~~~~~~g~~~~A~~~~~~~l~----~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~ 390 (590)
..++.+|...++|.+|+......+. .+.. ..++....-..+|....+..+|...+..+-... |..-.+.+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 4578899999999999998777663 2222 222566667788888999999998888776543 21111222
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH--H
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL--S 468 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--~ 468 (590)
=..-|.++....+|.-|..+|-++++-.. .....+.-...+..+-.+-...+..++--..+ +
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~----------------s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K 275 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFD----------------SLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAK 275 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHcccc----------------ccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhH
Confidence 22345556666899999999998887652 11121222334444445555667776655444 4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCC
Q 007775 469 KSEAISSYSASKCHATGVLYEKK--GLYKEAIKAFRSALNIDPA 510 (590)
Q Consensus 469 ~a~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~ 510 (590)
.+++....+.++....+..+... .+|+.|+..|+.-+..+|-
T Consensus 276 ~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 276 LALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 55666666778888888887653 4789999999888776654
No 381
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.67 E-value=0.97 Score=26.44 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=7.3
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 007775 482 HATGVLYEKKGLYKEAIKA 500 (590)
Q Consensus 482 ~~l~~~~~~~g~~~~A~~~ 500 (590)
..+|..+..+|++++|+..
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3334444444444444444
No 382
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.55 E-value=3.1 Score=39.70 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
.+-..+..||++.++.+-|+....+.+..+|....-+...+.++....+|.+|-+.+--
T Consensus 229 fIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 229 FIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999998776543
No 383
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.07 E-value=0.82 Score=27.11 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 549 SAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
+++..||.+-...++ |++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence 467788899888899 999999999988764
No 384
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=87.94 E-value=0.73 Score=25.51 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhh
Q 007775 198 YHILALCYYGAGEDLVALNLLRTLL 222 (590)
Q Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~~l 222 (590)
|..+...|.+.|++++|.++|+++.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4444445555555555555555444
No 385
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.89 E-value=1.9 Score=40.13 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 463 AEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 463 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
|..+|.+|..+.|.+...++.+|.++...|+.=+|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999987766668889999998888
No 386
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.75 E-value=21 Score=32.40 Aligned_cols=203 Identities=14% Similarity=0.084 Sum_probs=113.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHcCCCC--------CchHHHHHHHHHHHhCCChHHHHHH---HHHhhcCCCCCCChHHHHH
Q 007775 168 SFAFSIAGDLSSLATQIEELLPGII--------NRKERYHILALCYYGAGEDLVALNL---LRTLLSGSEDPKCLPALLI 236 (590)
Q Consensus 168 ~~~~~~~g~~~~a~~~~e~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~---~~~~l~~~~~p~~~~~~~~ 236 (590)
+.-..+.+++++|...+.+.+.... ....+...++..|...|++..--+. .+++......|........
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3444556667777777766654311 1133556677778777776543332 2333322223333333322
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-cchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh---
Q 007775 237 ASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--- 312 (590)
Q Consensus 237 ~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 312 (590)
+....-...+..+.-+..+...++...... ..++...-..+...+...|+ |.+|+......++++
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~-----------YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK-----------YSDALALINPLLHELKKY 158 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------HHHHHHHHHHHHHHHHhh
Confidence 322223344455566666666665443322 12222344556677888888 888888877665332
Q ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----cCCCcHHHH--HHHHHHHHHcCChHHHHHHHHHHHhcc
Q 007775 313 --NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGSNLKGW--LLMARILSAQKRYEDAETILNAALDQT 382 (590)
Q Consensus 313 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~--~~la~~~~~~g~~~~A~~~~~~a~~~~ 382 (590)
.|.-..++..-..+|....+..++...+..+-.. .|... .+- ..-|...+...+|..|..+|-++++-.
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql-qa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL-QAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH-HHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 1333456666777888888888777766655422 23322 222 223445566678999999998888765
No 387
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.68 E-value=3 Score=39.75 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=74.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC--------C----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007775 449 DLAFIYINLSQWHDAEICLSKSEAISSY--------S----------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA 510 (590)
Q Consensus 449 ~la~~~~~~g~~~~A~~~~~~a~~~~p~--------~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 510 (590)
.=|..+.++++|..|.--|..++++..+ . ..+-..+..||.+.++.+-|+..-.+.+.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 3366788999999999999999986421 1 122456889999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 007775 511 HVPSLISTAVVLRKLSDQSNAVIRSFLMAA 540 (590)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a 540 (590)
+..-+...|.++..+.+|. +|-..+.-+
T Consensus 261 ~frnHLrqAavfR~LeRy~--eAarSamia 288 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYS--EAARSAMIA 288 (569)
T ss_pred hhhHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 9999999999999999998 877765544
No 388
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=34 Score=34.30 Aligned_cols=67 Identities=19% Similarity=0.060 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCC
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAI---SSY----SASKCHATGVLYEKKGL-YKEAIKAFRSALNIDPA 510 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~ 510 (590)
.--+..+|.++...|+...|..+|...++. ... -|.+++.+|.++..+|. ..++..++.+|-....+
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 445677899999999999999999988742 111 27889999999999998 99999999999776544
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=24 Score=32.13 Aligned_cols=292 Identities=14% Similarity=0.055 Sum_probs=147.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCCCC------hHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCCCcchh
Q 007775 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKC------LPALLIASKICGEYPD--LAEEGATFASRALECLGDGCDQME 270 (590)
Q Consensus 199 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~------~~~~~~~a~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~ 270 (590)
..+++-....+++++|+..|.+++..+...+. -...+.+..++...+. ...+-+...+.+........ .
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k---~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK---I 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh---H
Confidence 45677778899999999999999954333221 2233444444443322 12222333333333221111 0
Q ss_pred hHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 007775 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKMLL 344 (590)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l 344 (590)
......+-.-+....+. ++.-+..+...+ +.....- ..-..++.++.+.|+|.+|+......+
T Consensus 84 ~KiirtLiekf~~~~ds----------l~dqi~v~~~~i-ewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 84 TKIIRTLIEKFPYSSDS----------LEDQIKVLTALI-EWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHHhcCCCCcc----------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 11111111111111110 334444444444 2211111 223457788899999999998877665
Q ss_pred cc------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCCchHHHHHHHHHHHHhcCHhHHHHHHHH
Q 007775 345 KL------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT-----GKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (590)
Q Consensus 345 ~~------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (590)
.. .|.-. ..+..-..+|....+..++...+..+-... |..-.+..-..-|...+.-.+|.-|..+|-+
T Consensus 153 ~ElKk~DDK~~Li-~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~E 231 (421)
T COG5159 153 HELKKYDDKINLI-TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIE 231 (421)
T ss_pred HHHHhhcCcccee-ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHH
Confidence 32 23333 667777888888888888888777665443 2111122222334455666788899999988
Q ss_pred HHHHHhhhhhcccccccccccccccccchHHHHHHHHH---HHHHhcCChHHHHHHHH--HHHh-cCCCCHHHHHHHHHH
Q 007775 414 LLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLA---FIYINLSQWHDAEICLS--KSEA-ISSYSASKCHATGVL 487 (590)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la---~~~~~~g~~~~A~~~~~--~a~~-~~p~~~~~~~~l~~~ 487 (590)
+++-...- ..+..+...+- ..-...+..++-...++ ..++ .......++...+..
T Consensus 232 a~Egft~l-------------------~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea 292 (421)
T COG5159 232 ALEGFTLL-------------------KMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEA 292 (421)
T ss_pred HHhccccc-------------------cchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHH
Confidence 88764211 11222222221 12223344444333332 1222 222334555555655
Q ss_pred HHH--cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 488 YEK--KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 488 ~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
+.. ..+|..|++.|..-+..+|---..+..+-..+..
T Consensus 293 ~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe 331 (421)
T COG5159 293 FGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLE 331 (421)
T ss_pred hCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHH
Confidence 543 3478888888887766554333333344444433
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.55 E-value=0.86 Score=28.10 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhh
Q 007775 199 HILALCYYGAGEDLVALNLLRTLL 222 (590)
Q Consensus 199 ~~la~~~~~~g~~~~A~~~~~~~l 222 (590)
+.+|..|...|+.+.|.+++++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 467788888888888888888887
No 391
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.70 E-value=5.6 Score=28.08 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
..|.-++...+.++|+..++++++..++. +....++-.+..+|...|++.+.+.+--+=
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~-------------------~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDR-------------------EDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCCh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444557778889999999999886432 444567777778888899998887765443
No 392
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=85.64 E-value=0.25 Score=50.50 Aligned_cols=96 Identities=18% Similarity=0.070 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHH--HhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAA--LQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAE 464 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 464 (590)
.......-+..+...|++..|...+.++-.. .+ ..........+.+....|++++|+
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~---------------------~q~~~~~Ll~A~lal~~~~~~~Al 81 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSP---------------------SQQARYQLLRARLALAQGDPEQAL 81 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCCh---------------------HHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3444445556666666666666665544411 11 111333444555666666666666
Q ss_pred HHHHHH--HhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 465 ICLSKS--EAISSY-SASKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 465 ~~~~~a--~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
..+... ..+.+. ....+...+.++...|++-+|...+-.
T Consensus 82 ~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 82 SLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp ------------------------------------------
T ss_pred HHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 665531 111111 122344456666666666665554433
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.06 E-value=28 Score=31.69 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=21.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLK 345 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~ 345 (590)
-+.+..+++..|+..+|+.-+++-+.
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45667889999999999998887654
No 394
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.85 E-value=4.4 Score=36.75 Aligned_cols=59 Identities=19% Similarity=0.030 Sum_probs=44.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 379 (590)
+...+..|...|.+.+|+++.++++..+|-+. ..+..+..++...|+--.+.+.+++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e-~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSE-QDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhh-HHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456677778888888888888888888777 777788888888887777777666643
No 395
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.17 E-value=2.8 Score=39.04 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007775 497 AIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS 560 (590)
Q Consensus 497 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 560 (590)
|..+|.+|..+.|++...++.+|.+....|+.- .|+-+|-+++-.....+.+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l--~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDL--DAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HH--HHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678999999999999999999999999999987 89999999987654468889999888887
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.92 E-value=2.6 Score=23.46 Aligned_cols=29 Identities=7% Similarity=-0.139 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007775 458 SQWHDAEICLSKSEAISSYSASKCHATGV 486 (590)
Q Consensus 458 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 486 (590)
|+.+.|...|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34556666666666666666666555443
No 397
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.91 E-value=77 Score=35.31 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHH
Q 007775 392 RTKAKVQLVQGQLKGAVETYTHLLA 416 (590)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~~l~ 416 (590)
..|+.-+..++++-+|-++....+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4556666666776666666555443
No 398
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.69 E-value=2 Score=26.47 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=11.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 007775 357 LMARILSAQKRYEDAETILNAAL 379 (590)
Q Consensus 357 ~la~~~~~~g~~~~A~~~~~~a~ 379 (590)
.++..|...|+.+.|.+.+++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444444
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.86 E-value=22 Score=32.48 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSA 504 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 504 (590)
.+...+..|...|.+.+|+++.++++..+|-+...+..+-.++...|+--.|++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444566677777777777777777777777777777777777777766666666543
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.79 E-value=18 Score=34.68 Aligned_cols=98 Identities=23% Similarity=0.238 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007775 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLS 468 (590)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 468 (590)
.++..+|.-|...|+++.|++.|-++-....+. ......|.++..+-...|+|..-..+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-------------------khvInm~ln~i~VSI~~~nw~hv~sy~~ 211 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-------------------KHVINMCLNLILVSIYMGNWGHVLSYIS 211 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-------------------HHHHHHHHHHHHHHHhhcchhhhhhHHH
Confidence 456678888899999999999998866554211 2335678888888888899888877777
Q ss_pred HHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 469 KSEAISS--------YSASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 469 ~a~~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
++...-. -.+.+...-|.+....++|..|.++|-.+.
T Consensus 212 ~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 212 KAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7765410 012345555666677779999998887654
No 401
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.26 E-value=74 Score=33.93 Aligned_cols=234 Identities=11% Similarity=-0.020 Sum_probs=113.3
Q ss_pred HHHHhcCCHHHHHHHHHHHcCCCCC-chHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCC
Q 007775 169 FAFSIAGDLSSLATQIEELLPGIIN-RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL 247 (590)
Q Consensus 169 ~~~~~~g~~~~a~~~~e~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~ 247 (590)
.++.+...|..|...-..- ..+++ -.......|..++..|++++|...|-+.+. ..+|..+.--++ ....
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~-~le~s~Vi~kfL-------daq~ 412 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG-FLEPSEVIKKFL-------DAQR 412 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc-cCChHHHHHHhc-------CHHH
Confidence 3445555556555544322 11111 244667778888999999999999998884 233432221111 1122
Q ss_pred HHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHH--------HHHHHHHHHHHHHHH--H---hh--
Q 007775 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDR--------ATRQAKALQALVSAA--R---ST-- 312 (590)
Q Consensus 248 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~a~--~---~~-- 312 (590)
..+-..+++...+..-.+.+ --..|-.+|.+.++......-- .-..+.|++.+.++- . .+
T Consensus 413 IknLt~YLe~L~~~gla~~d-----httlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSD-----HTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHcccccch-----hHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 33334455555544333332 2334445666666532211100 001344444443321 0 00
Q ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHH
Q 007775 313 -NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (590)
Q Consensus 313 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 391 (590)
...+. ..+-.++...++|++|++++..+ .|..........|..+... .+++-...+-+.+.....+......
T Consensus 488 k~~~he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~ 560 (933)
T KOG2114|consen 488 KFKKHE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSL 560 (933)
T ss_pred HhccCH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchh
Confidence 01111 12334556778888888887654 3443335555666666654 4555555555544433211111111
Q ss_pred ----HHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhh
Q 007775 392 ----RTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (590)
Q Consensus 392 ----~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 423 (590)
...-.+..-.+++..-...++.+.+..|+.++
T Consensus 561 s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 561 SNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred hcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 11223334456666666666667777665544
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.11 E-value=2.9 Score=23.25 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHH
Q 007775 532 VIRSFLMAALRLDGMNSSAWYNLGL 556 (590)
Q Consensus 532 ~A~~~~~~a~~~~p~~~~~~~~l~~ 556 (590)
.+...|++++...|.++..|...+.
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 5 RARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHH
Confidence 6666666666666666666665544
No 403
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.72 E-value=29 Score=35.27 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHH
Q 007775 390 LLRTKAKVQLVQGQLKGAVETYTHL 414 (590)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~~ 414 (590)
-|..||++....|++..|.++|.++
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhh
Confidence 3444455444555554444444443
No 404
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.41 E-value=39 Score=30.86 Aligned_cols=102 Identities=12% Similarity=0.204 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC-----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchH-H
Q 007775 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-----SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE-L 390 (590)
Q Consensus 317 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~ 390 (590)
.+++.++|..|.+.++.+.+.++..+.+...-. +....-..+|.+|..+.-.++.++..+.+++.+..|+.-. .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 488999999999999999999988887754321 1113455677777777777888888888888876553322 1
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
-...|...+...+|.+|-.++-..+...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2234555566678888888877766543
No 405
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=81.40 E-value=41 Score=30.33 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=35.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA-QKRYEDAETILNAALD 380 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~ 380 (590)
+..+|.+..+.|++++.+.+.++++..+|.-...-...+..+|-. .|....+...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 456777777778888888887777777666443445555555532 2444444444444433
No 406
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.62 E-value=18 Score=25.69 Aligned_cols=42 Identities=21% Similarity=0.020 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHccCHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSI---LYRLSLEYAEQRKLNAAHYYA 340 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~ 340 (590)
.++|+..+++++ +..++.++- +-.+..+|...|++.+++.+.
T Consensus 22 ~~~Al~~W~~aL-~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 22 TQQALQKWRKAL-EKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHH-hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555 444433322 233344455555555555543
No 407
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=80.08 E-value=5.5 Score=37.23 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=69.1
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHhhhh--hcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007775 394 KAKVQLVQGQLKGAVETYTHLLAALQVQT--KTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSE 471 (590)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 471 (590)
.+.-..+.++++.|..-+.+++......+ ....... ..............+++.+-...+.+..|+..-..++
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~-----~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQEN-----RIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhccccccccccccc-----ccccccccccccccchHHhcccccCCCcceecccccc
Confidence 34445666777777777776665432100 0000000 0001112223344556666667777777766666666
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 472 AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
..++....+++..+..+....++++|++.+..+....|++......+..+
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 66666666777777777777777777777777777777766554444333
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.05 E-value=16 Score=33.22 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
..+...+|.-|...|++++|.++|+.+....... ..++..+..|+...|+.+..+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4567788999999999999999999986554322 4556677888888888888777655443
No 409
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.75 E-value=69 Score=34.14 Aligned_cols=207 Identities=12% Similarity=0.013 Sum_probs=112.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g 402 (590)
.-....+..-|+-|+.+.+. ...+++.........|.-++..|++++|...|-+.+..-. .+.+. .-+....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le---~s~Vi----~kfLdaq 411 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE---PSEVI----KKFLDAQ 411 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC---hHHHH----HHhcCHH
Confidence 34456667777777765543 2344444435677778888888888888888888876542 12221 1122223
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH--
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK-- 480 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-- 480 (590)
+..+-..+++...+.. -.+..--..|-.+|.+.++.++-.+..++ .+.....
T Consensus 412 ~IknLt~YLe~L~~~g----------------------la~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd 465 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKG----------------------LANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFD 465 (933)
T ss_pred HHHHHHHHHHHHHHcc----------------------cccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeee
Confidence 3333334444444332 11123344567889999988876655543 2311100
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC-HHHHHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN-SSAWYNLGLFYK 559 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~ 559 (590)
.-..-.++.+.+-.++|.-+-.+.-. + -..+-.++...++++ +|+.++... .|.. .......|.++.
T Consensus 466 ~e~al~Ilr~snyl~~a~~LA~k~~~----h---e~vl~ille~~~ny~--eAl~yi~sl---p~~e~l~~l~kyGk~Ll 533 (933)
T KOG2114|consen 466 VETALEILRKSNYLDEAELLATKFKK----H---EWVLDILLEDLHNYE--EALRYISSL---PISELLRTLNKYGKILL 533 (933)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhcc----C---HHHHHHHHHHhcCHH--HHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 11122344555555666555443321 1 223445667889998 999987643 2222 234556788777
Q ss_pred HhCCCCchHHHHHHHHHHhc
Q 007775 560 SQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 560 ~~g~~~~~~~A~~~~~~al~ 579 (590)
... +++-...+-+...
T Consensus 534 ~h~----P~~t~~ili~~~t 549 (933)
T KOG2114|consen 534 EHD----PEETMKILIELIT 549 (933)
T ss_pred hhC----hHHHHHHHHHHHh
Confidence 654 4555555555443
No 410
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.49 E-value=87 Score=32.95 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=14.1
Q ss_pred HHHHhhhhhccchHHHHHHH
Q 007775 14 FLKAKCLQGLGRFKEAAQSC 33 (590)
Q Consensus 14 ~~~~~~~~~~g~~~~A~~~~ 33 (590)
....++|+.||+|++|++.-
T Consensus 63 L~~SKVyy~Lgeye~Al~yA 82 (929)
T KOG2062|consen 63 LLASKVYYYLGEYEDALEYA 82 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888886643
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.44 E-value=59 Score=31.86 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=44.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcccCCCc-HHHHHHH--HHHHHHcCChHHHHHHHHHHHhcc
Q 007775 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-LKGWLLM--ARILSAQKRYEDAETILNAALDQT 382 (590)
Q Consensus 321 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~l--a~~~~~~g~~~~A~~~~~~a~~~~ 382 (590)
...+...+..++|..|...+..+...-|... ...+..+ |..++..-++++|.+.++..+...
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4566677899999999999999887533333 1234444 444567888999999999877653
No 412
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.07 E-value=16 Score=31.86 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=55.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCh
Q 007775 451 AFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHV 512 (590)
Q Consensus 451 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 512 (590)
..-+.+.+...+|+...+.-++-.|.+......+-.++.-.|+|++|...++-+-++.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34567788999999999999999999999999999999999999999999999999988864
No 413
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=78.95 E-value=1.2e+02 Score=34.07 Aligned_cols=133 Identities=14% Similarity=0.003 Sum_probs=68.1
Q ss_pred HccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHH
Q 007775 329 EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV 408 (590)
Q Consensus 329 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 408 (590)
+.|-|.+|+.+|.--.+.. . ..+...|.-+...+.+++|.-.|+.+-+.. .--.+|...|++.+|+
T Consensus 920 kh~Ly~~aL~ly~~~~e~~---k-~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle----------kAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 920 KHGLYDEALALYKPDSEKQ---K-VIYEAYADHLREELMSDEAALMYERCGKLE----------KALKAYKECGDWREAL 985 (1265)
T ss_pred hcccchhhhheeccCHHHH---H-HHHHHHHHHHHHhccccHHHHHHHHhccHH----------HHHHHHHHhccHHHHH
Confidence 4455555555443221111 1 344555666666666666666665543221 1223455556666665
Q ss_pred HHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007775 409 ETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLY 488 (590)
Q Consensus 409 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 488 (590)
....+.-.-. ......-..|+.-+..++++-+|-+...+.+.- |... ...+
T Consensus 986 ~~a~ql~~~~----------------------de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~~~a------v~ll 1036 (1265)
T KOG1920|consen 986 SLAAQLSEGK----------------------DELVILAEELVSRLVEQRKHYEAAKILLEYLSD-PEEA------VALL 1036 (1265)
T ss_pred HHHHhhcCCH----------------------HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-HHHH------HHHH
Confidence 5544322110 111222366777788888888888777766531 2111 2334
Q ss_pred HHcCCHHHHHHHHHHH
Q 007775 489 EKKGLYKEAIKAFRSA 504 (590)
Q Consensus 489 ~~~g~~~~A~~~~~~a 504 (590)
.+...|++|+.....+
T Consensus 1037 ~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1037 CKAKEWEEALRVASKA 1052 (1265)
T ss_pred hhHhHHHHHHHHHHhc
Confidence 5555677777665543
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.64 E-value=31 Score=27.38 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=53.6
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCHHH
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA--ISSYSASK 480 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~ 480 (590)
.-..-..++++++....++..- .+.+....+|...+... +++.+.|..+.. +....+..
T Consensus 41 ~~~~L~~lLer~~~~f~~~~~Y-------------~nD~RylkiWi~ya~~~------~~~~~if~~l~~~~IG~~~A~f 101 (126)
T PF08311_consen 41 KQSGLLELLERCIRKFKDDERY-------------KNDERYLKIWIKYADLS------SDPREIFKFLYSKGIGTKLALF 101 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSGGG-------------TT-HHHHHHHHHHHTTB------SHHHHHHHHHHHHTTSTTBHHH
T ss_pred chhHHHHHHHHHHHHHhhhHhh-------------cCCHHHHHHHHHHHHHc------cCHHHHHHHHHHcCccHHHHHH
Confidence 3344456677777665332111 11244455666655532 277788877665 45556888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
|...|..+...|++++|.+.|+.++
T Consensus 102 Y~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 102 YEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 8899999999999999999998764
No 415
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=78.45 E-value=40 Score=28.50 Aligned_cols=194 Identities=12% Similarity=-0.024 Sum_probs=112.1
Q ss_pred CchHHHHHHHHHHH-hCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHh-c---CCCCHHHHHHHHHHHHHHcCCCCc
Q 007775 193 NRKERYHILALCYY-GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG-E---YPDLAEEGATFASRALECLGDGCD 267 (590)
Q Consensus 193 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~-~---~~~~~~~A~~~~~~~l~~~~~~~~ 267 (590)
.+|+..+.+|..+- -+.+|++|..+|+.--. ....+...+-.+...+ . ..+....|+..+..+-..+ .+
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCd---en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n--~~- 105 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCD---ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN--IP- 105 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC--CH-
Confidence 57888888888765 46789999999998773 2233344444442222 2 2335566777776665522 12
Q ss_pred chhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccc
Q 007775 268 QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (590)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 347 (590)
.+-..+|.++..-... .+..-..++|.+++.++- . -.+..+.+.|...|+... ++ +....
T Consensus 106 ----~aC~~~gLl~~~g~~~----r~~dpd~~Ka~~y~traC-d--l~~~~aCf~LS~m~~~g~--~k-------~~t~a 165 (248)
T KOG4014|consen 106 ----QACRYLGLLHWNGEKD----RKADPDSEKAERYMTRAC-D--LEDGEACFLLSTMYMGGK--EK-------FKTNA 165 (248)
T ss_pred ----HHHhhhhhhhccCcCC----ccCCCCcHHHHHHHHHhc-c--CCCchHHHHHHHHHhccc--hh-------hcccC
Confidence 4667777666543321 011111678888888877 3 456677777776665432 22 22223
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh----cCHhHHHHHHHHHHHHH
Q 007775 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ----GQLKGAVETYTHLLAAL 418 (590)
Q Consensus 348 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~ 418 (590)
|... --...+..+.-..+.+.|.++--++-++.. +.+--++.++|..- .+-++|..+-+++.++.
T Consensus 166 p~~g--~p~~~~~~~~~~kDMdka~qfa~kACel~~----~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 166 PGEG--KPLDRAELGSLSKDMDKALQFAIKACELDI----PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred CCCC--CCcchhhhhhhhHhHHHHHHHHHHHHhcCC----hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 3211 001223445556788899998888888753 44444555555432 35567877777777764
No 416
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.76 E-value=18 Score=31.49 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 007775 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 383 (590)
.-+.+.+...+|+...+.-++.+|.+. .....+-.+++-.|++++|...++-+-...|
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda-~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDA-GGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccc-cchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 445667778888888888888888877 7777777888888888888888877777776
No 417
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.69 E-value=1.1e+02 Score=32.57 Aligned_cols=356 Identities=13% Similarity=0.022 Sum_probs=183.3
Q ss_pred hhcCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCC-CCCC
Q 007775 155 KRIEWDPS---ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE-DPKC 230 (590)
Q Consensus 155 ~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~p~~ 230 (590)
...|..|. +-......+.+.++.......+ +..|.+.......+......|+.++|....+++-..+. .|+.
T Consensus 90 ~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~ 165 (644)
T PRK11619 90 RANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNA 165 (644)
T ss_pred HHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChH
Confidence 44454443 3444444556677777666632 22367777778888889999999989888888752222 2222
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHH-HHHH--
Q 007775 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ-ALVS-- 307 (590)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~-- 307 (590)
-..+ ..... ..|.. ......+++....-.+.. ..+.+... .+. .+. .. .-++.. +...
T Consensus 166 cd~l---~~~~~-~~g~l-t~~d~w~R~~~al~~~~~---~lA~~l~~-~l~-~~~--------~~-~a~a~~al~~~p~ 226 (644)
T PRK11619 166 CDKL---FSVWQ-QSGKQ-DPLAYLERIRLAMKAGNT---GLVTYLAK-QLP-ADY--------QT-IASALIKLQNDPN 226 (644)
T ss_pred HHHH---HHHHH-HcCCC-CHHHHHHHHHHHHHCCCH---HHHHHHHH-hcC-hhH--------HH-HHHHHHHHHHCHH
Confidence 1111 11211 12222 112233333222222111 01222221 110 000 00 111221 1111
Q ss_pred -H---HHhhCCCCh--HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007775 308 -A---ARSTNMRDL--SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDAETILNAA 378 (590)
Q Consensus 308 -a---~~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 378 (590)
+ . ...|.+. .....++..-....+.+.|...+.+.....+-+. ...+..++.-....+...+|..++..+
T Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~ 305 (644)
T PRK11619 227 TVETFA-RTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDV 305 (644)
T ss_pred HHHHHh-hccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhc
Confidence 1 1 1111111 2223334444556677888888887644443222 134445554444443367788888776
Q ss_pred HhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcC
Q 007775 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLS 458 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 458 (590)
.... .+....-....+....++++.+...+..+-... .......+.+|..+...|
T Consensus 306 ~~~~---~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~----------------------~~~~rw~YW~aRa~~~~g 360 (644)
T PRK11619 306 IMRS---QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA----------------------KEKDEWRYWQADLLLEQG 360 (644)
T ss_pred cccc---CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh----------------------ccCHhhHHHHHHHHHHcC
Confidence 5443 233444445556668889988777777643321 234667888899988899
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---H-HHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHH
Q 007775 459 QWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKE---A-IKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 459 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~---A-~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
+.++|...|+++.. +. ..|..++.-. .|..-. . ...-...+. . ......+..+...|+.. .|.
T Consensus 361 ~~~~A~~~~~~~a~--~~--~fYG~LAa~~--Lg~~~~~~~~~~~~~~~~~~---~--~~~~~ra~~L~~~g~~~--~a~ 427 (644)
T PRK11619 361 RKAEAEEILRQLMQ--QR--GFYPMVAAQR--LGEEYPLKIDKAPKPDSALT---Q--GPEMARVRELMYWNMDN--TAR 427 (644)
T ss_pred CHHHHHHHHHHHhc--CC--CcHHHHHHHH--cCCCCCCCCCCCCchhhhhc---c--ChHHHHHHHHHHCCCHH--HHH
Confidence 99999999999754 22 2333333222 222100 0 000000011 1 12345666777788877 888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007775 535 SFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAA 577 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~a 577 (590)
..+..++.. .++.-...++.+....|. ++.|+....++
T Consensus 428 ~ew~~~~~~--~~~~~~~~la~~A~~~g~---~~~ai~~~~~~ 465 (644)
T PRK11619 428 SEWANLVAS--RSKTEQAQLARYAFNQQW---WDLSVQATIAG 465 (644)
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHCCC---HHHHHHHHhhc
Confidence 877777664 245566677777777888 77777666544
No 418
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.25 E-value=44 Score=34.07 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 377 (590)
++.|.++..+ .++..-|-.||.+....|++..|.+++.++... ..|..++...|+-+--..+-..
T Consensus 653 l~iA~~la~e------~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 653 LDIAFDLAVE------ANSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHHHHHHh------hcchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHH
Confidence 6666665433 345667888888888889998888888887432 2233334444544332222222
Q ss_pred HHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHH
Q 007775 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (590)
Q Consensus 378 a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 414 (590)
+-+... .+ .--.+|...|+++++++.+.+.
T Consensus 718 ~~~~g~--~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGK--NN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcc--cc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 222221 11 1223566778888887776544
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.06 E-value=6.4 Score=38.25 Aligned_cols=61 Identities=13% Similarity=-0.047 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH-------cccC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007775 319 ILYRLSLEYAEQRKLNAAHYYAKMLL-------KLEG-GSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~~~~~~l-------~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 380 (590)
+...+.+++.-.|||..|++.++.+- ..-| -+. .+++.+|-+|..+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~i-s~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHI-STYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchhe-ehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999876541 1112 234 6788888888888888888888887664
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.58 E-value=66 Score=29.02 Aligned_cols=29 Identities=14% Similarity=0.400 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 007775 355 WLLMARILSAQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 355 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 383 (590)
+..++.+..+.|+|++...++++++...+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 34455666666666666666666665544
No 421
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.23 E-value=26 Score=24.71 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSA 504 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~a 504 (590)
+...|.-+...|++++|+.+|+++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334445555667777777766643
No 422
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.21 E-value=1.2e+02 Score=31.95 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=71.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccc
Q 007775 358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSAN 437 (590)
Q Consensus 358 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 437 (590)
.|..+..-|+-++|..+.++++......-...-.+.++..|.-.|+...-..++.-++.
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--------------------- 565 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--------------------- 565 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc---------------------
Confidence 34455555666677777766665431111122234555566666554332222221111
Q ss_pred cccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---h
Q 007775 438 HARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS--ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---V 512 (590)
Q Consensus 438 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~ 512 (590)
+..++..-.-.+|..+.-..+++......+-..+....+ ..+-..+|.++...|. .+|+..++.... +|.+ -
T Consensus 566 -D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQ 642 (929)
T KOG2062|consen 566 -DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQ 642 (929)
T ss_pred -ccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHH
Confidence 112233333333333344455555555444333322111 1234456666666665 467888777665 5544 2
Q ss_pred hhHHHHHHHHHHcCCC
Q 007775 513 PSLISTAVVLRKLSDQ 528 (590)
Q Consensus 513 ~~~~~l~~~~~~~g~~ 528 (590)
.++..+|.+..++.+.
T Consensus 643 gAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 643 GALIALAMIMIQQTEQ 658 (929)
T ss_pred HHHHHHHHHHHhcccc
Confidence 3566677777766554
No 423
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=74.13 E-value=1.3e+02 Score=32.21 Aligned_cols=277 Identities=10% Similarity=-0.012 Sum_probs=149.0
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHH--HHHHHHHhcCCCCHHHHHHHH
Q 007775 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL--LIASKICGEYPDLAEEGATFA 255 (590)
Q Consensus 178 ~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~--~~~a~~~~~~~~~~~~A~~~~ 255 (590)
+.-...++.-+...+.+......+..++...|++++-...-.++. ...|..+..+ .....+.........++...+
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~--~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMS--EIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHH--HhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 334455555566677788888889999999999887766666666 3444444443 333334444556677889999
Q ss_pred HHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHH
Q 007775 256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM------RDLSILYRLSLEYAE 329 (590)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p------~~~~~~~~la~~~~~ 329 (590)
++++...- .. ..|...+......+.. ..+...++.-...|.++++...- .....+...-..|..
T Consensus 174 ekal~dy~-~v-----~iw~e~~~y~~~~~~~----~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~ 243 (881)
T KOG0128|consen 174 EKALGDYN-SV-----PIWEEVVNYLVGFGNV----AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLC 243 (881)
T ss_pred HHHhcccc-cc-----hHHHHHHHHHHhcccc----ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 99987433 22 1333333333322221 00111156666677776621111 112334444455555
Q ss_pred ccCHHHHHHHHHHHHcccCCCcH--HHHHHHH--H-HHHHcCChHHHHHHHHHHH-------hccCCCCchHHHHHHHHH
Q 007775 330 QRKLNAAHYYAKMLLKLEGGSNL--KGWLLMA--R-ILSAQKRYEDAETILNAAL-------DQTGKWEQGELLRTKAKV 397 (590)
Q Consensus 330 ~g~~~~A~~~~~~~l~~~p~~~~--~~~~~la--~-~~~~~g~~~~A~~~~~~a~-------~~~~~~~~~~~~~~la~~ 397 (590)
.-..++-+.++...+...-+... ..|.... . ......+++.|..-+.+.+ ...+ ....-|..+...
T Consensus 244 n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~--~~~q~~~~yidf 321 (881)
T KOG0128|consen 244 NVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP--IKDQEWMSYIDF 321 (881)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHH
Confidence 55556667777776655422110 1111111 1 1122334444444433322 2222 223345556666
Q ss_pred HHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCC
Q 007775 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYI-NLSQWHDAEICLSKSEAISSY 476 (590)
Q Consensus 398 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~ 476 (590)
....|++..-...+++++... +.+...|...+...- .++-...+...+.+++...|.
T Consensus 322 e~~~G~p~ri~l~~eR~~~E~----------------------~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 322 EKKSGDPVRIQLIEERAVAEM----------------------VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred HHhcCCchHHHHHHHHHHHhc----------------------cccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 667777777777777777665 455777777765443 344455566777778877777
Q ss_pred CHHHHHHHHHHHHH
Q 007775 477 SASKCHATGVLYEK 490 (590)
Q Consensus 477 ~~~~~~~l~~~~~~ 490 (590)
....|...-..+.+
T Consensus 380 tgdL~~rallAleR 393 (881)
T KOG0128|consen 380 TGDLWKRALLALER 393 (881)
T ss_pred HHHHHHHHHHHHHh
Confidence 66665443333333
No 424
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=74.03 E-value=6.8 Score=38.06 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAIS---------SYSASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
.+...+.+++.-.|||..|++.++.. +++ +-...+++.+|-+|...++|.+|++.|...+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999988753 222 2235668999999999999999999999876
No 425
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.89 E-value=48 Score=32.49 Aligned_cols=62 Identities=15% Similarity=-0.082 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHhcc
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS--KCHAT--GVLYEKKGLYKEAIKAFRSALNI 507 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~--~~~~l--~~~~~~~g~~~~A~~~~~~al~~ 507 (590)
.....+.-++..++|..|...++.....-|.+.. .+..+ |.-+...-++++|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445566778999999999999999886344333 34444 44445677899999999988764
No 426
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.09 E-value=1e+02 Score=30.65 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--C--CC---ChhhHHHHHHHH--HHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 478 ASKCHATGVLYEKKGLYKEAIKAFRSALNI--D--PA---HVPSLISTAVVL--RKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~--p~---~~~~~~~l~~~~--~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
..+....+.++...|.+.+|...+-+.... . .. ..-.+-..+.++ ....... ....-+++ .
T Consensus 300 ~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~--~~~~r~RK--------~ 369 (414)
T PF12739_consen 300 LRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPS--PGLTRFRK--------Y 369 (414)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCC--ccchhhHH--------H
Confidence 344556677777788877776666555433 1 11 223344444444 2221110 00000111 1
Q ss_pred HHHHHH-HHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 549 SAWYNL-GLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 549 ~~~~~l-~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
..|..| |.-|.+.|+ ...|..+|.+|+......
T Consensus 370 af~~vLAg~~~~~~~~---~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 370 AFHMVLAGHRYSKAGQ---KKHALRCYKQALQVYEGK 403 (414)
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhCCC
Confidence 233333 788889999 999999999999876543
No 427
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=73.00 E-value=36 Score=27.10 Aligned_cols=60 Identities=20% Similarity=0.077 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 007775 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (590)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 223 (590)
.+.-...+...|.-+..-+.+....+....+++....+|..|-+.|+..+|-++++++-+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333345677888888888888877766667889999999999999999999999998874
No 428
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.49 E-value=1.3e+02 Score=31.69 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH---------HccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcC
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYA---------EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 366 (590)
-++|+...-.++++..|-.++.+..-|++|- ..+..+.|+++|+++++..|... +-.+++.++...|
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~--sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY--SGINLATLLRAAG 334 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh--ccccHHHHHHHhh
Confidence 6788888777773445556666666666664 34667788889999998888743 4445555555554
No 429
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.43 E-value=97 Score=32.64 Aligned_cols=123 Identities=12% Similarity=0.041 Sum_probs=74.5
Q ss_pred CCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChH------HHHHHHHHH---HHccCHHH
Q 007775 265 GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEY---AEQRKLNA 335 (590)
Q Consensus 265 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~------~~~~la~~~---~~~g~~~~ 335 (590)
+++.+.+....++-..|....+ |+.-+++.+..- .-|+... +.+..+-++ -+-|+-++
T Consensus 195 np~VL~~d~V~nlmlSyRDvQd-----------Y~amirLVe~Lk--~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 195 NPDVLHPDTVSNLMLSYRDVQD-----------YDAMIRLVEDLK--RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred CccccCHHHHHHHHhhhccccc-----------hHHHHHHHHHHH--hCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 4444555666677777777777 776666665442 2242211 111122222 24578889
Q ss_pred HHHHHHHHHcccCCCcHHHHHHHHHHHHH---------cCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcC
Q 007775 336 AHYYAKMLLKLEGGSNLKGWLLMARILSA---------QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (590)
Q Consensus 336 A~~~~~~~l~~~p~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~ 403 (590)
|+...-.+++.......+.+...|++|-. .+..+.|+++|+++++..|.. ..-.+++.++...|+
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~---~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE---YSGINLATLLRAAGE 335 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh---hccccHHHHHHHhhh
Confidence 99988888876544322666677777654 356788999999999998732 222356666666654
No 430
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.71 E-value=1.7e+02 Score=32.11 Aligned_cols=165 Identities=13% Similarity=0.057 Sum_probs=94.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccc----CCCcHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhccCCCC-------
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLE----GGSNLKGWLLMARILSAQKRY--EDAETILNAALDQTGKWE------- 386 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~------- 386 (590)
+..|+..|...|++++|++.+.+..+.. +... ..+-.....+...+.. +-..++-.-.++.+|...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~-~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL-DGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchh-hhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 6778999999999999999999988733 2222 3444445555555544 444554444444444110
Q ss_pred ch----HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh------
Q 007775 387 QG----ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN------ 456 (590)
Q Consensus 387 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------ 456 (590)
+. .+-.....-|......+-++.+++.++..+.. .....+..++..|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~---------------------~~~~lht~ll~ly~e~v~~~~ 644 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL---------------------TSTLLHTVLLKLYLEKVLEQA 644 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc---------------------cchHHHHHHHHHHHHHHhhcc
Confidence 00 01112233345667778888888888877631 123333344443332
Q ss_pred --cCChHHHHHH--HHHHHh-------cCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 457 --LSQWHDAEIC--LSKSEA-------ISSYS-------ASKCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 457 --~g~~~~A~~~--~~~a~~-------~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
.++-+++.+. .++... ..|.. ...|...+.++.+.|+.++|+..|-..+.
T Consensus 645 ~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 645 STDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred CchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1223344433 222221 11211 34577788888899999999999887764
No 431
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.55 E-value=93 Score=29.04 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--C--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCChh
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISS--Y--S----ASKCHATGVLYEKKGLYKEAIKAFRSAL--NIDPAHVP 513 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~ 513 (590)
..+...+|.+|.+.++|..|...+.-. ..+. . + ...+..+|.+|.+.++..+|..+..++- ..+..+..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 456778888888888888887766432 2221 1 1 2346778888888888888888877653 22334433
Q ss_pred hH----HHHHHHHHHcCCCchHHHHHHH
Q 007775 514 SL----ISTAVVLRKLSDQSNAVIRSFL 537 (590)
Q Consensus 514 ~~----~~l~~~~~~~g~~~l~~A~~~~ 537 (590)
.. .+.|.++-..+++- +.|..+|
T Consensus 182 Lqie~kvc~ARvlD~krkFl-EAAqrYy 208 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFL-EAAQRYY 208 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33 34455555555553 3444444
No 432
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.23 E-value=69 Score=29.84 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--------hhhHHHHHHHHHHcCCCchHHHHHHHHHHH--hhcCCC
Q 007775 478 ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH--------VPSLISTAVVLRKLSDQSNAVIRSFLMAAL--RLDGMN 547 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~--~~~p~~ 547 (590)
......++.+|.+.++|..|-..+.- +..+... ...+..+|.+|.+.++.. +|..+..++- ..+..|
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~v--eae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKV--EAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHH--HHHHHHHHHHHhhhcccC
Confidence 34577899999999999999888753 3333211 345778999999999988 9999888763 334456
Q ss_pred HHHHHHH----HHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 548 SSAWYNL----GLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 548 ~~~~~~l----~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
+.....+ ++++-..++ +-||...|-+...
T Consensus 180 e~Lqie~kvc~ARvlD~krk---FlEAAqrYyels~ 212 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRK---FLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 5554443 555666777 8888777766543
No 433
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.41 E-value=92 Score=28.50 Aligned_cols=128 Identities=13% Similarity=-0.008 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCCChhhHHHHHHHH---HHcCCCc-hHHH
Q 007775 460 WHDAEICLSKSEAISSYSASKCHATGVLYEKK--GLYKEAIKAFRSALNIDPAHVPSLISTAVVL---RKLSDQS-NAVI 533 (590)
Q Consensus 460 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~---~~~g~~~-l~~A 533 (590)
.+.-...+..+++-+|.+-.+|...-.++... .++..-+...++.++.+|.+-..|...-.++ ...+++. +..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45556778888999999999988887777665 5677778888999999999877776554444 1223332 1144
Q ss_pred HHHHHHHHhhcCCCHHHHHHH---HHHHHHhCCCCc---hHHHHHHHHHHhccccCCCCC
Q 007775 534 RSFLMAALRLDGMNSSAWYNL---GLFYKSQGTQSS---KLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 534 ~~~~~~a~~~~p~~~~~~~~l---~~~~~~~g~~~~---~~~A~~~~~~al~l~p~~~~~ 587 (590)
.++-..++..++.+..+|... -......|+..+ +++-+++.-.++-.+|++...
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~ 229 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSV 229 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccch
Confidence 556667788899999999876 333344555332 344556666667777877554
No 434
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.15 E-value=17 Score=31.62 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 533 IRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 533 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
.++..++.++..| ++.++..++.++...|+ .++|.....++..+.|
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~---~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGD---PEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 3333444444444 34455555555555555 5555555555555555
No 435
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=68.99 E-value=24 Score=28.00 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=20.2
Q ss_pred HcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 490 KKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 490 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
.+|+-++--+.+....+....+++.+..+|.+|.+.|+.. ++.+.+.+|-+
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r--~~~ell~~ACe 148 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTR--EANELLKEACE 148 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HH--HHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchh--hHHHHHHHHHH
Confidence 3444444444444444333334445555555555555544 55554444443
No 436
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=68.83 E-value=57 Score=25.91 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=47.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHcCCC----------------CCchHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 007775 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGI----------------INRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (590)
Q Consensus 160 ~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 223 (590)
|..++..+..++++.|+.+.....+++.-..+ .++..++..++.+|...|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34567788889999999999988887653322 13356777777888888888888877777763
No 437
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.80 E-value=9.8 Score=35.67 Aligned_cols=109 Identities=11% Similarity=-0.090 Sum_probs=74.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC-----------C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISS-----------Y--------SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA 510 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p-----------~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 510 (590)
.+.-..+.++++.|..-+.+++..-. + -.....+++.+-...+.+..|+..-..++..+++
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 34456677777777777766654211 0 0123445666777777777777777777777777
Q ss_pred ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007775 511 HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS 560 (590)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 560 (590)
...+++..+..+....+++ +|++.+..+....|++......+..+-..
T Consensus 308 ~tka~~Rr~~~~~~~~~~~--~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYD--EALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred hCcHHHHHHhHHHhhhchh--hhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 7888888888888888887 88888888888888877665555444433
No 438
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.71 E-value=1.6e+02 Score=33.05 Aligned_cols=186 Identities=15% Similarity=0.056 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccc-------cccccccccchH-HHHHHHHHHHHHhcCC
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF-------YKGSANHARSLE-LEVWLDLAFIYINLSQ 459 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~la~~~~~~g~ 459 (590)
....+.+|.+|...|+..+|+.+|.++..-..... .+...... ..+......+.. ...|.....++...+-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 44556777788888888888888887765431111 00000000 000011111111 3445566677778888
Q ss_pred hHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCCc---
Q 007775 460 WHDAEICLSKSEAISSYS----ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQS--- 529 (590)
Q Consensus 460 ~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~--- 529 (590)
.+.+.+.-.+|++.-|++ +.....+-.-+...|.+-+|...+- .+|+. -..+..+..++++.|..+
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlvivLfecg~l~~L~ 1074 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLVIVLFECGELEALA 1074 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHhccchHHHh
Confidence 888888888888765554 3334455555666777777765443 34543 245667777788888775
Q ss_pred ------h-HHHHH-HHHHHHhhcCCCH-HHHHHHHHHHHHhCCCCchHHHHH-HHHHHhccc
Q 007775 530 ------N-AVIRS-FLMAALRLDGMNS-SAWYNLGLFYKSQGTQSSKLEAAE-CFEAAASLE 581 (590)
Q Consensus 530 ------l-~~A~~-~~~~a~~~~p~~~-~~~~~l~~~~~~~g~~~~~~~A~~-~~~~al~l~ 581 (590)
+ ++-.. +++.+-+..|-.. ..|..|--.+...++ +.+|-. .|+.+..+.
T Consensus 1075 ~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN---~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1075 TFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHN---FRKAATVMYEYAMRLE 1133 (1480)
T ss_pred hCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcc---hhHHHHHHHHHHHHhc
Confidence 1 12233 3444444444333 333334444555666 776654 455555443
No 439
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=66.23 E-value=79 Score=28.20 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=13.7
Q ss_pred HHHhcCHhHHHHHHHHHHHHHhh
Q 007775 398 QLVQGQLKGAVETYTHLLAALQV 420 (590)
Q Consensus 398 ~~~~g~~~~A~~~~~~~l~~~~~ 420 (590)
.+..|+++.|++...-+++.+..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 34556666666666666665533
No 440
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.12 E-value=2.1e+02 Score=31.44 Aligned_cols=179 Identities=15% Similarity=0.034 Sum_probs=101.9
Q ss_pred HHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHccCH--HHHHHHHHHHHcc
Q 007775 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN----MRDLSILYRLSLEYAEQRKL--NAAHYYAKMLLKL 346 (590)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~ 346 (590)
-+..|+..|...|. .++|++.+.+.. ... +.-.+.+-.........+.- +-..++-.-.++.
T Consensus 506 ~y~~Li~LY~~kg~-----------h~~AL~ll~~l~-d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~ 573 (877)
T KOG2063|consen 506 KYRELIELYATKGM-----------HEKALQLLRDLV-DEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK 573 (877)
T ss_pred cHHHHHHHHHhccc-----------hHHHHHHHHHHh-ccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc
Confidence 57778888999999 999999999988 522 22223333444444444444 5555555555555
Q ss_pred cCCCcHHHHH------------HHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh--------cCHhH
Q 007775 347 EGGSNLKGWL------------LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ--------GQLKG 406 (590)
Q Consensus 347 ~p~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~--------g~~~~ 406 (590)
+|......+. ....-+......+-++.+++.++..... .....+..++..|... ++-++
T Consensus 574 ~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~-~~~~lht~ll~ly~e~v~~~~~~~~kg~e 652 (877)
T KOG2063|consen 574 NPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL-TSTLLHTVLLKLYLEKVLEQASTDGKGEE 652 (877)
T ss_pred CchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc-cchHHHHHHHHHHHHHHhhccCchhcccc
Confidence 5553211111 1122345667788889999998887642 2445555566555432 22234
Q ss_pred HHHH--HHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 407 AVET--YTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 407 A~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
+.+. .++....-+ ..+.+... ......+. ...|...+.++.+.|+.++|+..|-..+.
T Consensus 653 ~~E~~~rekl~~~l~-~s~~Y~p~------~~L~~~~~-~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 653 APETTVREKLLDFLE-SSDLYDPQ------LLLERLNG-DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred chhhhHHHHHHHHhh-hhcccCcc------hhhhhccc-hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 4444 222222211 11111111 11111222 56788889999999999999988876653
No 441
>PRK12798 chemotaxis protein; Reviewed
Probab=65.80 E-value=1.4e+02 Score=29.27 Aligned_cols=223 Identities=11% Similarity=-0.043 Sum_probs=132.0
Q ss_pred HhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 007775 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (590)
Q Consensus 172 ~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A 251 (590)
..-|+.......+..-. .++.+.-..-|..-+-.|+-.+|.+.+..+.... .|.....++.+.........+..+|
T Consensus 92 lSGGnP~vlr~L~~~d~---~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l~~~~dP~~A 167 (421)
T PRK12798 92 LSGGNPATLRKLLARDK---LGNFDQRLADGALAYLSGRGREARKLLAGVAPEY-LPAELGAYLALVQGNLMVATDPATA 167 (421)
T ss_pred hcCCCHHHHHHHHHcCC---CChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHHhcccCHHHH
Confidence 34566666555555433 2355555666777788999999999998877433 3333333443433334456678899
Q ss_pred HHHHHHHHHHcCCCCcchhhH-HHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh---HHHHHHHHHH
Q 007775 252 ATFASRALECLGDGCDQMEST-ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---SILYRLSLEY 327 (590)
Q Consensus 252 ~~~~~~~l~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~---~~~~~la~~~ 327 (590)
+.+|+.+--..|..- ..+ ++..--.+....|+ .++...+-.+-+ .....++ ..+-......
T Consensus 168 l~~lD~aRLlaPGTL---vEEAALRRsi~la~~~g~-----------~~rf~~la~~Y~-rRF~~S~YA~~F~~~F~~~~ 232 (421)
T PRK12798 168 LKLLDQARLLAPGTL---VEEAALRRSLFIAAQLGD-----------ADKFEALARNYL-RRFRHSPYASQFAQRFVDLV 232 (421)
T ss_pred HHHHHHHHHhCCchH---HHHHHHHHhhHHHHhcCc-----------HHHHHHHHHHHH-HHhccCchHHHHHHHHHHHH
Confidence 999999988888633 222 33333344466666 666666555555 4444444 3333334444
Q ss_pred HHccCHHHHHHHHHHHHc-ccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC--CchHHHHHHHHHHHHhcCH
Q 007775 328 AEQRKLNAAHYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW--EQGELLRTKAKVQLVQGQL 404 (590)
Q Consensus 328 ~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~la~~~~~~g~~ 404 (590)
...++-..- ..+..++. .+|..-...|..+++.-.-.|+.+-|.-.-++++.+.... +...+....+-...-..++
T Consensus 233 ~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~ 311 (421)
T PRK12798 233 VRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDA 311 (421)
T ss_pred HhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccH
Confidence 444322222 23445553 3565544788889999999999999999999998886421 1222332333333344566
Q ss_pred hHHHHHHHHH
Q 007775 405 KGAVETYTHL 414 (590)
Q Consensus 405 ~~A~~~~~~~ 414 (590)
++|+..+.++
T Consensus 312 ~~al~~L~~I 321 (421)
T PRK12798 312 ESALEELSQI 321 (421)
T ss_pred HHHHHHHhcC
Confidence 6776665543
No 442
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=65.32 E-value=2.1 Score=43.95 Aligned_cols=117 Identities=23% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHH--cccCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 007775 300 KALQALVSAARSTNM-RDLSILYRLSLEYAEQRKLNAAHYYAKMLL--KLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (590)
Q Consensus 300 ~A~~~~~~a~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 376 (590)
.|..++.++- ...+ ........-+..+...|++..|...+.++- .+.|..........+.+....|++++|+..+.
T Consensus 7 aA~~yL~~A~-~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 7 AAEQYLQQAQ-QASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH-hcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 3444555554 3333 333556667889999999999999998876 34454443566777889999999999999987
Q ss_pred HH-HhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 007775 377 AA-LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (590)
Q Consensus 377 ~a-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 417 (590)
.. ...-|.......+...+.++...|++-+|...+-.+-..
T Consensus 86 ~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 86 AQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ------------------------------------------
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 42 111222234556667888999999988887765544443
No 443
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=64.75 E-value=73 Score=25.67 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=12.6
Q ss_pred cCHHHHHHHHHHHHcccCCCcHHHHHHHHHHH
Q 007775 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (590)
Q Consensus 331 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 362 (590)
+.....+.+++.++..++.++ .....+..+|
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~-~~~~~li~ly 51 (140)
T smart00299 21 NLLEELIPYLESALKLNSENP-ALQTKLIELY 51 (140)
T ss_pred CcHHHHHHHHHHHHccCccch-hHHHHHHHHH
Confidence 344444444444444433333 3333333333
No 444
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.45 E-value=1.3e+02 Score=28.43 Aligned_cols=189 Identities=12% Similarity=0.062 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHH
Q 007775 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (590)
Q Consensus 332 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 411 (590)
--++|+.+-+-...+-|..+ +++-.++.++.+..+... ..+.. ..+..+...=......+-++++...+
T Consensus 211 Lc~EairLgRll~~L~p~EP-E~~GL~ALmll~~sR~~A---------R~~~~-G~~vlL~dQDr~lW~r~lI~eg~all 279 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEP-EALGLLALMLLQESRRPA---------RFDAD-GEPVLLEDQDRSLWDRALIDEGLALL 279 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhhhhh---------ccCCC-CCeeeccccchhhhhHHHHHHHHHHH
Confidence 34778887777778888887 777777766654422111 11110 11111111111222334466777777
Q ss_pred HHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007775 412 THLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN-----LSQWHDAEICLSKSEAISSYSASKCHATGV 486 (590)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 486 (590)
.+++.... |.-....-.++.++.. .-+|..-..+|.-...+.|. |.+-.+.+.
T Consensus 280 ~rA~~~~~---------------------pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAV 337 (415)
T COG4941 280 DRALASRR---------------------PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAV 337 (415)
T ss_pred HHHHHcCC---------------------CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHH
Confidence 77776541 2222333333333332 33566666666666666554 555556666
Q ss_pred HHHHcCCHHHHHHHHHHHhcc--CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 007775 487 LYEKKGLYKEAIKAFRSALNI--DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLG 555 (590)
Q Consensus 487 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~ 555 (590)
......-.+.++...+-.... -..+...+...|.++.++|+.+ +|...|++++.+.++..+..+...
T Consensus 338 Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~--eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 338 ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVE--EARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChH--HHHHHHHHHHHhcCChHHHHHHHH
Confidence 666655566677666655443 2344556777888888888888 888888888888887666554433
No 445
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=64.34 E-value=36 Score=33.67 Aligned_cols=83 Identities=18% Similarity=0.192 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 007775 161 PSILDHLSFAFSIAGDLSSLATQIEE-LLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (590)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~e~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~ 239 (590)
+.+...++..+...|..+.+...+.. ..-+.+.|..+.+.+...++..|+|..|.++...+.. ....+++....+...
T Consensus 103 ~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 103 PSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALY 181 (429)
T ss_pred CccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHH
Confidence 44556788888999999999988864 3445678888889999999999999999999888764 233333333333333
Q ss_pred HHhcC
Q 007775 240 ICGEY 244 (590)
Q Consensus 240 ~~~~~ 244 (590)
+|+.-
T Consensus 182 ~~~~~ 186 (429)
T PF10037_consen 182 SCYKY 186 (429)
T ss_pred HHHHh
Confidence 44433
No 446
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=64.19 E-value=20 Score=25.23 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
.+-.+..+++-+.+.|++++|+..|+..++...+..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999999888776654
No 447
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=63.66 E-value=77 Score=25.54 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHH
Q 007775 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (590)
Q Consensus 359 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (590)
...+...+.......+++..+..++ .+...+..+..+|.+.+ ..+.+..++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 3444556677888888888877765 56677777777777543 344444444
No 448
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=63.13 E-value=91 Score=27.85 Aligned_cols=41 Identities=22% Similarity=0.068 Sum_probs=28.5
Q ss_pred CCCcchhhHHHHHHHHHHh---------hchhhccChHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007775 264 DGCDQMESTANCLLGISLS---------AQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (590)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~ 316 (590)
+-++...+..+-..|..+. ..++ ...|+.++++++ .++|+-
T Consensus 162 dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~-----------l~~Al~~L~rA~-~l~~k~ 211 (230)
T PHA02537 162 DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAET-----------LQLALALLQRAF-QLNDKC 211 (230)
T ss_pred CCChHHHHHHHHHHHHHHhhcccCCCccCccc-----------HHHHHHHHHHHH-HhCCCC
Confidence 3445566667777777663 2334 778999999999 888764
No 449
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=62.82 E-value=1.8e+02 Score=29.50 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=36.5
Q ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-ccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 007775 339 YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD-QTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (590)
Q Consensus 339 ~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 415 (590)
++.++-...++........-+.++.+.|+...|..++.+.-. +.+ ....+.-...+.+.....++..|...+.+..
T Consensus 50 yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd-~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~ 126 (604)
T COG3107 50 YLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTD-AQRAEKSLLAAELALAQKQPAAALQQLAKLL 126 (604)
T ss_pred HHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCH-HHHHHHHHHHHHHHHhccChHHHHHHHhhcc
Confidence 344444444443312222334556666666666666666542 222 1122333345555556666666666655443
No 450
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.23 E-value=30 Score=28.05 Aligned_cols=52 Identities=10% Similarity=-0.049 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCC
Q 007775 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (590)
Q Consensus 315 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 367 (590)
...+.....+......|++.-|.++...++..+|++. .+....+.++.+.|.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~-~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE-EARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHH
Confidence 4567777888888899999999999999999999988 888888888776653
No 451
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=58.68 E-value=1.2e+02 Score=25.93 Aligned_cols=109 Identities=16% Similarity=0.098 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-----HccCHHHHHHHHHHHHcc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYA-----EQRKLNAAHYYAKMLLKL 346 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~l~~ 346 (590)
.+-..||..+....+ .+++|..+|..-- .- -..+...+.+|..+. ..++...|++.+..+-..
T Consensus 35 e~C~lLgdYlEgi~k----------nF~~A~kv~K~nC-de-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~ 102 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQK----------NFQAAVKVFKKNC-DE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA 102 (248)
T ss_pred hHHHHHHHHHHHHHH----------HHHHHHHHHHhcc-cc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc
Confidence 466666665543332 1788888877654 22 233566666665543 346788999999888764
Q ss_pred cCCCcHHHHHHHHHHHHHc-----C--ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 007775 347 EGGSNLKGWLLMARILSAQ-----K--RYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (590)
Q Consensus 347 ~p~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~ 399 (590)
+.+ .+...++.++..- + +.++|++++.++-+... ..+-+.|...++
T Consensus 103 --n~~-~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~----~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 103 --NIP-QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED----GEACFLLSTMYM 155 (248)
T ss_pred --CCH-HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC----chHHHHHHHHHh
Confidence 344 7777888777653 2 47789999999887653 344445555554
No 452
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.96 E-value=24 Score=24.88 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.0
Q ss_pred hcCHhHHHHHHHHHHHHH
Q 007775 401 QGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~ 418 (590)
.|++++|+.+|..+++..
T Consensus 19 ~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 19 KGNAEEAIELYTEAVELC 36 (75)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 577888888888887775
No 453
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.85 E-value=37 Score=27.58 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKG 492 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 492 (590)
......+......|++.-|..+.+.++..+|++..+...++.++...|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 334444555555666666666666666666666666666665555544
No 454
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.10 E-value=1.6e+02 Score=27.06 Aligned_cols=118 Identities=11% Similarity=0.026 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHhccCCCCh
Q 007775 441 SLELEVWLDLAFIYINL--SQWHDAEICLSKSEAISSYSASKCHATGVLY------EKKGLYKEAIKAFRSALNIDPAHV 512 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~------~~~g~~~~A~~~~~~al~~~p~~~ 512 (590)
|....+|...-.++... ..+..-....+++++.++.|-..|...-.+. ..-..+..-.++-...+..++.+.
T Consensus 105 PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~ 184 (328)
T COG5536 105 PKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNN 184 (328)
T ss_pred CchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCCh
Confidence 55577777766666554 5677777888899999999877765544443 222334444555566777888888
Q ss_pred hhHHHH---HHHHHHcCCCc----hHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 513 PSLIST---AVVLRKLSDQS----NAVIRSFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 513 ~~~~~l---~~~~~~~g~~~----l~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
.+|... -......|++- +++-+.+.-.++-.+|++..+|..+-.+.
T Consensus 185 SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 185 SAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence 888766 33344456554 22445555566667899988887664443
No 455
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.43 E-value=1.8e+02 Score=27.44 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 417 (590)
.+++..++..|++.|+.+.|.+.+.+..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555666666666666666655555443
No 456
>PRK12798 chemotaxis protein; Reviewed
Probab=56.37 E-value=2.1e+02 Score=28.16 Aligned_cols=229 Identities=15% Similarity=0.029 Sum_probs=134.2
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCc-chhhHHHHHHHHH
Q 007775 202 ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTANCLLGIS 280 (590)
Q Consensus 202 a~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~ 280 (590)
+.+|...|-..+.++.+-.- ...|+ ....+..+.+.|. .|+..++.+.+..+ +|...+ .+-+......|..
T Consensus 87 a~iy~lSGGnP~vlr~L~~~---d~~~~-~d~~L~~g~laY~-~Gr~~~a~~~La~i---~~~~l~~~lg~~laLv~a~l 158 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLLAR---DKLGN-FDQRLADGALAYL-SGRGREARKLLAGV---APEYLPAELGAYLALVQGNL 158 (421)
T ss_pred HHhhHhcCCCHHHHHHHHHc---CCCCh-hhHHHHHHHHHHH-cCCHHHHHHHhhcC---ChhhcCchhhhHHHHHHHHH
Confidence 44565555555544443222 23333 3333334434333 34565777766543 333221 1212233333333
Q ss_pred HhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH--HHH
Q 007775 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGW 355 (590)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~ 355 (590)
+. ..+ ..+|+..|+.+- -..|... -++-.-..+..+.|+.+++..+-.+.+.....++. ..+
T Consensus 159 ~~-~~d-----------P~~Al~~lD~aR-LlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~ 225 (421)
T PRK12798 159 MV-ATD-----------PATALKLLDQAR-LLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFA 225 (421)
T ss_pred hc-ccC-----------HHHHHHHHHHHH-HhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHH
Confidence 32 233 689999999987 7777654 33444455668899999999988888877766551 233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccc
Q 007775 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGS 435 (590)
Q Consensus 356 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 435 (590)
...+..+.+.++-. -...+..++...+......+|..+++.-...|+.+-|.-.-++++.+..
T Consensus 226 ~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~---------------- 288 (421)
T PRK12798 226 QRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLAD---------------- 288 (421)
T ss_pred HHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcc----------------
Confidence 33444444444222 2233666666544345678999999999999999999999999998852
Q ss_pred cccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 436 ANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 436 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
........+....+....-..++++|...+...
T Consensus 289 --~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 289 --PDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred --CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 122333445555555555666778877766543
No 457
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.15 E-value=5.7e+02 Score=33.17 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-HHHHHH---HHHHHHHcC-CHHHHHHHHHHHh-cc--CCCChhhH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS-ASKCHA---TGVLYEKKG-LYKEAIKAFRSAL-NI--DPAHVPSL 515 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~---l~~~~~~~g-~~~~A~~~~~~al-~~--~p~~~~~~ 515 (590)
+.+.+..|.+....|-++-++..+.+...+..-. .++... -+.||.... ....+++..+..= .. +....+.+
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 4455666777777888888888887776653322 122222 233333332 3333443333210 00 11225567
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh--CCCCc---hHHHHHHHHHHhccc
Q 007775 516 ISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQ--GTQSS---KLEAAECFEAAASLE 581 (590)
Q Consensus 516 ~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--g~~~~---~~~A~~~~~~al~l~ 581 (590)
...|..+.+.|+.+ +|-..|..|++++-..+.+|..-|...... +.+.+ -..|+.+|-+|....
T Consensus 2816 ~lkG~f~~kL~~~e--eAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~ 2884 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFE--EANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY 2884 (3550)
T ss_pred HhhhHHHHHhcCcc--hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc
Confidence 78899999999999 999999999999998899998887765543 22111 245677777776544
No 458
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.00 E-value=3e+02 Score=29.96 Aligned_cols=42 Identities=21% Similarity=0.115 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 345 (590)
.+.|++...+ -++++.|..||.....+|+.+-|..+|++.-.
T Consensus 659 le~ale~akk------ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 659 LEVALEAAKK------LDDKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 7777776443 25788999999999999999999999998743
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.90 E-value=3.5e+02 Score=30.61 Aligned_cols=130 Identities=10% Similarity=0.008 Sum_probs=78.6
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007775 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI 473 (590)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 473 (590)
..+++...+-.+.+.+...++++.- ..+.|..+.+...+-+.+...|.+-+|...+ -.
T Consensus 989 v~rlle~hn~~E~vcQlA~~AIe~l------------------~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~ 1046 (1480)
T KOG4521|consen 989 VVRLLEEHNHAEEVCQLAVKAIENL------------------PDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LR 1046 (1480)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC------------------CCcchhHHHHHHHHHHhhhchhhHHHHHHHH----Hc
Confidence 3444555555666666666666653 3444666777778888888899999887544 44
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHH------------HHHH-HHHHHhccCCCCh-hhHHHHHHHHHHcCCCchHHHHHH
Q 007775 474 SSYS---ASKCHATGVLYEKKGLYK------------EAIK-AFRSALNIDPAHV-PSLISTAVVLRKLSDQSNAVIRSF 536 (590)
Q Consensus 474 ~p~~---~~~~~~l~~~~~~~g~~~------------~A~~-~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~l~~A~~~ 536 (590)
+|+. ...+..+..++++.|.++ +-.. .++.+-+..|-.. ..|..|-..+...+++. +.|-.+
T Consensus 1047 npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~R-kaatvM 1125 (1480)
T KOG4521|consen 1047 NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFR-KAATVM 1125 (1480)
T ss_pred CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchh-HHHHHH
Confidence 5654 234566677777777653 2233 3344444444333 34444444556778887 466777
Q ss_pred HHHHHhhcCC
Q 007775 537 LMAALRLDGM 546 (590)
Q Consensus 537 ~~~a~~~~p~ 546 (590)
|+-+.++..+
T Consensus 1126 YEyamrl~se 1135 (1480)
T KOG4521|consen 1126 YEYAMRLESE 1135 (1480)
T ss_pred HHHHHHhccc
Confidence 8888776543
No 460
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.12 E-value=1.9e+02 Score=27.30 Aligned_cols=102 Identities=9% Similarity=0.080 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCC-----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchH-H
Q 007775 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-----SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE-L 390 (590)
Q Consensus 317 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~ 390 (590)
.+++...+..|++.|+-+.|.+.+.+..+..-. +..-....+|..|....-..+.++..+..++.+.+|+.-. .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 478999999999999999999988887654321 2224455667777766656666666666677665443321 2
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
-...|.......+|.+|-..|-..+...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 2234555566678888888777666543
No 461
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=54.94 E-value=1.9e+02 Score=27.37 Aligned_cols=164 Identities=15% Similarity=0.045 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhh----------ccC-----hHHHHHHHHHHHHHHHHHHHhh
Q 007775 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV----------AIT-----DFDRATRQAKALQALVSAARST 312 (590)
Q Consensus 248 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~-----~~~~~~~~~~A~~~~~~a~~~~ 312 (590)
.+||+..-.-...+.|..++ ++-.++.+.....+. ... ........+++...+.++....
T Consensus 212 c~EairLgRll~~L~p~EPE-----~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~ 286 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPE-----ALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASR 286 (415)
T ss_pred HHHHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 45677777777777776663 333333322222111 000 0112334778888999888333
Q ss_pred CCCChHHHHHHHHHHHH-----ccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc
Q 007775 313 NMRDLSILYRLSLEYAE-----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ 387 (590)
Q Consensus 313 ~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 387 (590)
.|.-....-.++.++.. .-+|..-..+|+-.....|... +-.+.+.......-.+.++...+.......-...
T Consensus 287 ~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv--V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy 364 (415)
T COG4941 287 RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV--VTLNRAVALAMREGPAAGLAMVEALLARPRLDGY 364 (415)
T ss_pred CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe--EeehHHHHHHHhhhHHhHHHHHHHhhcccccccc
Confidence 34433444444444433 3477787888888888888755 4445555666665677778777776665221234
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
...+...|.++.+.|+.++|...|++++.+.
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred cccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 4567789999999999999999999999986
No 462
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.04 E-value=79 Score=22.62 Aligned_cols=36 Identities=17% Similarity=-0.000 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
.|=.+-.+|+++...|+.++|+..|++.+...+..+
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 344567799999999999999999999999888765
No 463
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.03 E-value=43 Score=29.01 Aligned_cols=47 Identities=11% Similarity=-0.056 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 462 DAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 462 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
..++..++.+...| ++.++..++.++...|+.++|....+++....|
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33445555566566 477777788888888888888888888888777
No 464
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=53.80 E-value=2.1e+02 Score=27.34 Aligned_cols=201 Identities=13% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCchHHHHHHHH---------HHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCC----
Q 007775 181 ATQIEELLPGIINRKERYHILAL---------CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL---- 247 (590)
Q Consensus 181 ~~~~e~~~~~~~~~~~~~~~la~---------~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~---- 247 (590)
...|.+.+...|.....+..... .|.+.+++.+.-.+.-+---...+++.....+..+.-.+.....
T Consensus 71 ~s~f~~il~~~p~a~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~k~~~f~ 150 (319)
T PF04840_consen 71 LSQFFKILNQNPVASNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKSKNDAFE 150 (319)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcchhHHH
Q ss_pred ---HHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH
Q 007775 248 ---AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (590)
Q Consensus 248 ---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la 324 (590)
.++.++.++---++.......+........-.-+...|+ ...|..+-.+.- -.+...|+...
T Consensus 151 ~~~~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~-----------~k~A~kl~k~Fk----v~dkrfw~lki 215 (319)
T PF04840_consen 151 AKLIEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQ-----------EKQAEKLKKEFK----VPDKRFWWLKI 215 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCC-----------HHHHHHHHHHcC----CcHHHHHHHHH
Q ss_pred HHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCH
Q 007775 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (590)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~ 404 (590)
.++...++|++-...... ..+| ..|.-...++...|+..+|..+..+ -+ .......|.+.|++
T Consensus 216 ~aLa~~~~w~eL~~fa~s-----kKsP-IGyepFv~~~~~~~~~~eA~~yI~k----~~-------~~~rv~~y~~~~~~ 278 (319)
T PF04840_consen 216 KALAENKDWDELEKFAKS-----KKSP-IGYEPFVEACLKYGNKKEASKYIPK----IP-------DEERVEMYLKCGDY 278 (319)
T ss_pred HHHHhcCCHHHHHHHHhC-----CCCC-CChHHHHHHHHHCCCHHHHHHHHHh----CC-------hHHHHHHHHHCCCH
Q ss_pred hHHHHHHHH
Q 007775 405 KGAVETYTH 413 (590)
Q Consensus 405 ~~A~~~~~~ 413 (590)
.+|.+..-+
T Consensus 279 ~~A~~~A~~ 287 (319)
T PF04840_consen 279 KEAAQEAFK 287 (319)
T ss_pred HHHHHHHHH
No 465
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.69 E-value=1.9e+02 Score=26.79 Aligned_cols=65 Identities=3% Similarity=-0.080 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CchHH---HHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGEL---LRTKAKVQLVQGQLKGAVETYTHLLAA 417 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~ 417 (590)
+++.++|..|.+.++.+.+.++..+.+...-.. -..++ -..+|.+|..+.-.++.++..+.+++.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 556666666666666666666655554432100 11222 223444444444444444444444444
No 466
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=52.72 E-value=31 Score=24.32 Aligned_cols=18 Identities=6% Similarity=-0.005 Sum_probs=14.2
Q ss_pred hcCChHHHHHHHHHHHhc
Q 007775 456 NLSQWHDAEICLSKSEAI 473 (590)
Q Consensus 456 ~~g~~~~A~~~~~~a~~~ 473 (590)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 468888898888888764
No 467
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=52.39 E-value=1.3e+02 Score=27.78 Aligned_cols=111 Identities=6% Similarity=-0.026 Sum_probs=61.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHH--HHHcCCH----HHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 452 FIYINLSQWHDAEICLSKSEAISSY----SASKCHATGVL--YEKKGLY----KEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~--~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
..++..++|++=...+.+......+ ... |...... ....... ..-...++.-++..|++..++..+|..
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 4456677777777777666543222 111 1111111 1111111 124455555566778777777777776
Q ss_pred HHHcC------CCc--------------hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 522 LRKLS------DQS--------------NAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 522 ~~~~g------~~~--------------l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
+.... .+. .+.|...+.+++.++|....+...+-.+-...|.
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 65431 111 4577777888888888887777776666555554
No 468
>PRK09687 putative lyase; Provisional
Probab=51.73 E-value=2e+02 Score=26.72 Aligned_cols=225 Identities=12% Similarity=-0.055 Sum_probs=133.7
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhccCCCCchH
Q 007775 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY----EDAETILNAALDQTGKWEQGE 389 (590)
Q Consensus 314 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~----~~A~~~~~~a~~~~~~~~~~~ 389 (590)
..+..+....+..+...|. +++...+.+++. + .++ ......+.++...|+. .++...+..++..++ ++.
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~-~-~d~-~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~---d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS-S-KNP-IERDIGADILSQLGMAKRCQDNVFNILNNLALEDK---SAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh-C-CCH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC---CHH
Confidence 4556666666666766664 444444555432 2 234 6666777788888864 467777777655443 344
Q ss_pred HHHHHHHHHHHhcCH-----hHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHH
Q 007775 390 LLRTKAKVQLVQGQL-----KGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAE 464 (590)
Q Consensus 390 ~~~~la~~~~~~g~~-----~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 464 (590)
+....+..+...+.. ..+...+..++. ..+..+....+..+...++ .+|+
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~------------------------D~~~~VR~~a~~aLg~~~~-~~ai 161 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF------------------------DKSTNVRFAVAFALSVIND-EAAI 161 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh------------------------CCCHHHHHHHHHHHhccCC-HHHH
Confidence 443333333333221 122332222221 1235566666666666665 6788
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Q 007775 465 ICLSKSEAISSYSASKCHATGVLYEKKG-LYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 465 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
..+..++.- .++.+...-+..+...+ ....+...+.+++. ..+..+...-...+.+.|+. .|+..+.+.++.
T Consensus 162 ~~L~~~L~d--~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~~---~av~~Li~~L~~ 234 (280)
T PRK09687 162 PLLINLLKD--PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKDK---RVLSVLIKELKK 234 (280)
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCCh---hHHHHHHHHHcC
Confidence 888888862 33444444444443332 24578888888873 23456666666777777764 588888888774
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 544 DGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 544 ~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
.. .......++...|. .+|+..+.+.++.+|+..
T Consensus 235 ~~----~~~~a~~ALg~ig~----~~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 235 GT----VGDLIIEAAGELGD----KTLLPVLDTLLYKFDDNE 268 (280)
T ss_pred Cc----hHHHHHHHHHhcCC----HhHHHHHHHHHhhCCChh
Confidence 22 44567777788888 479999999998777543
No 469
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=51.67 E-value=31 Score=23.73 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=27.3
Q ss_pred HHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 12 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
.+..+|+-....|++++|+..|...++......
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 39 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQAL 39 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 456788889999999999999999888776554
No 470
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.02 E-value=76 Score=25.16 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=18.7
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHH
Q 007775 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (590)
Q Consensus 372 ~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (590)
.++|..+....-....+..+...|..+...|++.+|.++|+
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444443333222334444455555555555555555543
No 471
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=50.15 E-value=35 Score=19.79 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=19.9
Q ss_pred HHHHHHHH--HHHHHhC--CCCchHHHHHHHHHHhcc
Q 007775 548 SSAWYNLG--LFYKSQG--TQSSKLEAAECFEAAASL 580 (590)
Q Consensus 548 ~~~~~~l~--~~~~~~g--~~~~~~~A~~~~~~al~l 580 (590)
+.+.+.+| .++..-. -+.|.++|..+|+++.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 34666777 4444332 222578888888887654
No 472
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=49.94 E-value=89 Score=22.01 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--HHHHHhcCChhHHHHHHHHHhcc-----CCCCChhhHHHHHHHHHHHH
Q 007775 60 ETLNRAVELL--PELWKLADAPRETIMSYRRALLP-----CWNLDAETTAKLQKEFAIFL 112 (590)
Q Consensus 60 ~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~~~a~~l 112 (590)
..+..|...+ +.-+-..|++++|+..|.+++.. ...+++.....+...+...+
T Consensus 3 ~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl 62 (77)
T smart00745 3 DYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYL 62 (77)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
No 473
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.25 E-value=2.7e+02 Score=27.44 Aligned_cols=431 Identities=10% Similarity=0.052 Sum_probs=197.1
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCccc---cc------CCccccCcchHHHHH
Q 007775 73 WKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRS---QM------GSSFVPRNNIEEAIL 143 (590)
Q Consensus 73 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~---~~------~~~~~~~~~~~~a~~ 143 (590)
...+|...+++-.|.+|...++.+.+..-..+.+... .+...+ .|...+. .+ .+.-.+.|...+ +
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~---~~Ns~~-~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd--L 198 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVT---YYNSSN-VPFAEWEEFVGMRNFGEDSTSSWKSGAVAD--L 198 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHH---hhcCCC-CcchhHHHHhhccccccccccccccccHHH--H
Confidence 3467999999999999999977666654333321111 111110 0100000 00 001112222222 1
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcC-CCCCchHHHHHHH-HHHHhCCChHHHHHHHHHh
Q 007775 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP-GIINRKERYHILA-LCYYGAGEDLVALNLLRTL 221 (590)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~-~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~ 221 (590)
.....|..+..+..+...+++-.+.+.|.+.+.+.-. ...-+.++++.+. ..-+..| .+++.++
T Consensus 199 ---------~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EM 264 (625)
T KOG4422|consen 199 ---------LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEM 264 (625)
T ss_pred ---------HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHH
Confidence 2234588888999999999999999999999976532 1122334444432 2223333 6778888
Q ss_pred hcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHH
Q 007775 222 LSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300 (590)
Q Consensus 222 l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 300 (590)
+.....|+-.+....+ -|...-|.++.|.+.+-+++..... ..+.-. ..|+.+.....+.++. ...
T Consensus 265 isqkm~Pnl~TfNalL--~c~akfg~F~~ar~aalqil~EmKeiGVePsL-sSyh~iik~f~re~dp----------~k~ 331 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALL--SCAAKFGKFEDARKAALQILGEMKEIGVEPSL-SSYHLIIKNFKRESDP----------QKV 331 (625)
T ss_pred HHhhcCCchHhHHHHH--HHHHHhcchHHHHHHHHHHHHHHHHhCCCcch-hhHHHHHHHhcccCCc----------hhh
Confidence 8777888844433333 3455677787888777766643322 111011 1444444444444431 234
Q ss_pred HHHHHHHHHHhh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc------ccCCCcH-HHHHHHHHHHHHc
Q 007775 301 ALQALVSAARST--------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK------LEGGSNL-KGWLLMARILSAQ 365 (590)
Q Consensus 301 A~~~~~~a~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~-~~~~~la~~~~~~ 365 (590)
+...+....+.+ .|.+...+..-..++....+.+-|.++-.-.-. ..|+... -.+..+-.+.++.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 555555544221 233333333333334466666666654332211 1111110 2233344455555
Q ss_pred CChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccc--cccccccccccccchH
Q 007775 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS--DKRFYKGSANHARSLE 443 (590)
Q Consensus 366 g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 443 (590)
...+.-..+|+.++-..-.+. ..+...+-+.....|.++---.++...+..+......+.. ..........+..|..
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~-~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r 490 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPH-SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPER 490 (625)
T ss_pred HHHHHHHHHHHHhccceecCC-chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHH
Confidence 666666777766553211011 1122222222222233222222222222221100000000 0000000111111222
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCh--hhHHH
Q 007775 444 LEVWLDLAFIYINL-SQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID---PAHV--PSLIS 517 (590)
Q Consensus 444 ~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~--~~~~~ 517 (590)
...-...+.+-... ..++.+..-.+ ...-.+..+...+.++.+.|++++|.+.+.-.++.. |..+ .+...
T Consensus 491 ~Ql~~~~ak~aad~~e~~e~~~~R~r----~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 491 EQLQVAFAKCAADIKEAYESQPIRQR----AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH----hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 22222222221111 11111111111 122235567777888888888888888887765432 2222 22334
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhh
Q 007775 518 TAVVLRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 518 l~~~~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
+-..-...+... +|+..++-++..
T Consensus 567 l~d~a~~~~sps--qA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 567 LMDSAKVSNSPS--QAIEVLQLASAF 590 (625)
T ss_pred HHHHHHhcCCHH--HHHHHHHHHHHc
Confidence 444445555655 777777766543
No 474
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=49.00 E-value=27 Score=20.30 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhcc
Q 007775 550 AWYNLGLFYKSQGTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 550 ~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l 580 (590)
+.+++|+++.+...+.+..+.+..++..+..
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEELYRD 33 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHCCC
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4455666666555433345555555555443
No 475
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=48.78 E-value=2.4e+02 Score=26.58 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=33.8
Q ss_pred hhCCCChHHHHHHHHHHHHccCHHHHHHHHHH--HHcccCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007775 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKM--LLKLEGGS-NLKGWLLMARILSAQKRYEDAETILNAALD 380 (590)
Q Consensus 311 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--~l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 380 (590)
...|...++++..+...+..|+|..|-.++-. ++-.+|+. ...+....-..-.-..+++.|.+-+.+.-+
T Consensus 123 nf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 123 NFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred CCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44455556666666666677777666654332 23222221 112222222222334456666666555443
No 476
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=48.35 E-value=2.9e+02 Score=27.53 Aligned_cols=109 Identities=15% Similarity=-0.032 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHH---hhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--cCC-C---cHHHHHHHHHHHHHcCC
Q 007775 297 RQAKALQALVSAAR---STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EGG-S---NLKGWLLMARILSAQKR 367 (590)
Q Consensus 297 ~~~~A~~~~~~a~~---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~-~---~~~~~~~la~~~~~~g~ 367 (590)
.++.|...|.++-. ........+....+.++...|.+.+|...+-++... ..+ . ....+-..+.++
T Consensus 277 ~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~----- 351 (414)
T PF12739_consen 277 YLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY----- 351 (414)
T ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-----
Confidence 36777777777420 111233356666777788888888877766665544 111 1 102333333333
Q ss_pred hHHHHHHHHHHHhc-cCCC-----Cc-hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHh
Q 007775 368 YEDAETILNAALDQ-TGKW-----EQ-GELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (590)
Q Consensus 368 ~~~A~~~~~~a~~~-~~~~-----~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 419 (590)
..+.. .|.+ .. +-.+..-|.-|...|+...|..+|.+++....
T Consensus 352 ---------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 ---------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ---------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 11111 1101 11 22233456788999999999999999998863
No 477
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.66 E-value=1.9e+02 Score=25.17 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 381 (590)
..+..+-......||++.|-++|--++...+-+....|..=+.++.+.+.-....+.++.....
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~ 105 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISF 105 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 5566777788899999999999999998776666333444455666666555554666655443
No 478
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=47.40 E-value=38 Score=19.10 Aligned_cols=32 Identities=38% Similarity=0.547 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHh-CCCCchHHHHHHHHHHhcc
Q 007775 549 SAWYNLGLFYKSQ-GTQSSKLEAAECFEAAASL 580 (590)
Q Consensus 549 ~~~~~l~~~~~~~-g~~~~~~~A~~~~~~al~l 580 (590)
.+.+.||.+|..- |-+.|.++|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3566677776532 2222478888888887654
No 479
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.38 E-value=93 Score=24.41 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----hcc
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKSEAISSYS---------------ASKCHATGVLYEKKGLYKEAIKAFRSA----LNI 507 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~a----l~~ 507 (590)
+..+|+...+.+++-.++-.|++|+.+..+- .....++|..+..+|+.+-.+++++-+ +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888887643211 223567888888888888888887644 445
Q ss_pred CCCCh
Q 007775 508 DPAHV 512 (590)
Q Consensus 508 ~p~~~ 512 (590)
-|..+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 55543
No 480
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.25 E-value=2.9e+02 Score=27.09 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------C-CCh
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS---ASKCHATGVLYEKKGLYKEAIKAFRSALNID-------P-AHV 512 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p-~~~ 512 (590)
-.++..+|..|...|+.+.|+++|.++-...... ...+.++..+-...|+|..-..+-.++.+.- + -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4578889999999999999999999976554333 4557778888888899888777777665431 0 012
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007775 513 PSLISTAVVLRKLSDQSNAVIRSFLMAAL 541 (590)
Q Consensus 513 ~~~~~l~~~~~~~g~~~l~~A~~~~~~a~ 541 (590)
.+...-|.+...+++|. .|..+|-.+.
T Consensus 230 kl~C~agLa~L~lkkyk--~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYK--SAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHH--HHHHHHHhCC
Confidence 34444555566666777 7777776553
No 481
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=46.82 E-value=3.8e+02 Score=28.45 Aligned_cols=258 Identities=14% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChH----HHHHHHHHHhcC
Q 007775 169 FAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALLIASKICGEY 244 (590)
Q Consensus 169 ~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~----~~~~~a~~~~~~ 244 (590)
.++.-+|+|+.|++.+-+ .+....--..+|.++...|-..-.-..-...+ ..++.++. +.+...+.-...
T Consensus 266 ~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~ll--s~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLL--SVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCcccccee--eecCCCCCCcCHHHHHHHHHHHHh
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHh-----------hchhhccChHHHHHHHHHHHHHHHHHHHhhC
Q 007775 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS-----------AQSKVAITDFDRATRQAKALQALVSAARSTN 313 (590)
Q Consensus 245 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 313 (590)
..+..+|+.++--+-.........+...+...+...-. .-.+ ....++-..+.+ ...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r-----------~~G~i~~~~~Li-~~~ 407 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSR-----------TPGLIERRLSLI-KFD 407 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-E-----------EE-HHHHTGGGG-T-S
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCcc-----------ccceeecccccc-CCC
Q ss_pred CCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHH
Q 007775 314 MRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (590)
Q Consensus 314 p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 390 (590)
.... .+....|.-....|++++|+.+|.-+-+.+.--. ..-..|+.+...... .........+-...
T Consensus 408 ~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~-lln~~Ls~~l~~~~~---------~~~~~s~~~~l~~l 477 (613)
T PF04097_consen 408 DDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLS-LLNRLLSQVLSQPSS---------SSLSDSERERLIEL 477 (613)
T ss_dssp SSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHH-HHHHHHHHHHHCSST---------SSSSSTTTTSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCccc---------cccccchhhhHHHH
Q ss_pred HHHHHHHHHHhcCH-----hHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 391 LRTKAKVQLVQGQL-----KGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 391 ~~~la~~~~~~g~~-----~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
-..+...|...+.. ......+..++.+ .-..-+...|++++|++
T Consensus 478 a~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L-------------------------------~~ff~~~~~g~~~~AL~ 526 (613)
T PF04097_consen 478 AKEILERYKSNPHISSKVSRKNRETFQLLLDL-------------------------------AEFFDLYHAGQYEQALD 526 (613)
T ss_dssp HHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHH-------------------------------HHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhCcchHhhccHHHHHHHHHHHHH-------------------------------HHHHHHHHcCCHHHHHH
Q ss_pred HHHHHHhcCCCCHHHHHHHHH
Q 007775 466 CLSKSEAISSYSASKCHATGV 486 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~ 486 (590)
.+++ +.+-|.++......+.
T Consensus 527 ~i~~-L~liP~~~~~V~~~a~ 546 (613)
T PF04097_consen 527 IIEK-LDLIPLDPSEVRRCAE 546 (613)
T ss_dssp HHHH-TT-S-S-HHHHHHHHH
T ss_pred HHHh-CCCCCCCHHHHHHHHH
No 482
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=46.49 E-value=52 Score=23.38 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
+-.+..+|+-....|+|++|+..|...++......
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 44566788899999999999999999988776543
No 483
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.19 E-value=1.3e+02 Score=29.49 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHH-----------HHHhccCCCChhhHHHHHHHHHHcCCCc--------hHHHHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAF-----------RSALNIDPAHVPSLISTAVVLRKLSDQS--------NAVIRSFLMAAL 541 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~-----------~~al~~~p~~~~~~~~l~~~~~~~g~~~--------l~~A~~~~~~a~ 541 (590)
++..|.+......|++|+.++ .+.++.-.+.+..-.-+.|||+.+.+.. |..|.+-|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Q ss_pred hhc---------CCCH------HHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007775 542 RLD---------GMNS------SAWYNLGLFYKSQGTQSSKLEAAECFEAA 577 (590)
Q Consensus 542 ~~~---------p~~~------~~~~~l~~~~~~~g~~~~~~~A~~~~~~a 577 (590)
-.+ |..| ..+..-|.+.+.+|+ .++|.++++.+
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~---~deAye~le~a 293 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQ---RDEAYEALESA 293 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHH
No 484
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=46.11 E-value=88 Score=33.13 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=82.3
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh--cCChHHHHHHHHHHH
Q 007775 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN--LSQWHDAEICLSKSE 471 (590)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~ 471 (590)
-++..+..+++.++.--|..++..-| .+++.......+.+.++.. .|++..++.-..-++
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp------------------~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~ 120 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLP------------------KDHHVVATLRSNQASCYMQLGLGEYPKAIPECELAL 120 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheecc------------------ccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhh
Confidence 34556667777777777777776653 2234556666677766665 578888888888889
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 472 AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
...|....++...+.+|...++++-|++...-.....|.++.+.......
T Consensus 121 ~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 121 ESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred hccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 99999889999999999999999999999888888899986555433333
No 485
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.98 E-value=60 Score=34.25 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=77.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYS----ASKCHATGVLYEK--KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 523 (590)
-++.+++.+++..|.--|..++.+-|.+ .....+.+.++.. .|++..++.-..-++...|....++...+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3566778888888888888888887744 3445666666655 568999999999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 524 KLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
..++.+ -|.+...-....+|.++.+
T Consensus 139 al~k~d--~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 139 ALNKLD--LAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCcchH
Confidence 988877 7777776667778887543
No 486
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=45.60 E-value=1.1e+02 Score=28.84 Aligned_cols=89 Identities=12% Similarity=-0.037 Sum_probs=54.3
Q ss_pred HHHHhcCCHHHHHHHHHHHcCC----CCCchH--HHHHHHHHHHhCCChHHHHHHHHHhhc-----CCCCCCChHHHHHH
Q 007775 169 FAFSIAGDLSSLATQIEELLPG----IINRKE--RYHILALCYYGAGEDLVALNLLRTLLS-----GSEDPKCLPALLIA 237 (590)
Q Consensus 169 ~~~~~~g~~~~a~~~~e~~~~~----~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~p~~~~~~~~~ 237 (590)
.+..++++.++|.+.+++.... ..+++. ....+|.+++..|+..++.+.+...-. ....|+....++..
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3445667888888888876532 222333 345678999999999999888776653 12333333344555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Q 007775 238 SKICGEYPDLAEEGATFASRALE 260 (590)
Q Consensus 238 a~~~~~~~~~~~~A~~~~~~~l~ 260 (590)
+.-+++..+++ ..+|..++.
T Consensus 163 ssqYyk~~~d~---a~yYr~~L~ 182 (380)
T KOG2908|consen 163 SSQYYKKIGDF---ASYYRHALL 182 (380)
T ss_pred HHHHHHHHHhH---HHHHHHHHH
Confidence 55666666665 344444444
No 487
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.52 E-value=3e+02 Score=26.89 Aligned_cols=54 Identities=13% Similarity=-0.156 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYS-----ASKCHATGVL--YEKKGLYKEAIKAFRS 503 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~l~~~--~~~~g~~~~A~~~~~~ 503 (590)
.+.-+...++|..|...|+++....+.. ...+..+..+ +...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4557788999999999999999875422 2334444444 4567789999999986
No 488
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.72 E-value=50 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.034 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhh
Q 007775 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESS 43 (590)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~ 43 (590)
+-.+..+|+-..+.|+|++|+..|...++..-..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4456778888999999999999999998877554
No 489
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=44.33 E-value=1.6e+02 Score=23.39 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCC----------------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG----------------SNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 381 (590)
+.+..+..++...|+.+....++++.-.++.+ +. ..+..++..+...|++..|+++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~-~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTS-RLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCH-HHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44556667777888888888888776544321 12 56777788888888888888888888887
Q ss_pred cCCCCchHHHHHHHHH
Q 007775 382 TGKWEQGELLRTKAKV 397 (590)
Q Consensus 382 ~~~~~~~~~~~~la~~ 397 (590)
.|-+-...+|..+-.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 7644445555554443
No 490
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.08 E-value=1.4e+02 Score=22.45 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=19.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCC
Q 007775 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN 193 (590)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~ 193 (590)
+.-|-....|+..|++.|+-+.+.+.|+.-....|.
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 344455556666666666666666666544333333
No 491
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=43.76 E-value=1.1e+02 Score=21.45 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HHHHHhcCChhHHHHHHHHHhcc-----CCCCChhhHHHHHHHHHHHHhh
Q 007775 61 TLNRAVELL--PELWKLADAPRETIMSYRRALLP-----CWNLDAETTAKLQKEFAIFLLY 114 (590)
Q Consensus 61 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~~~a~~ll~ 114 (590)
++..|...+ +.-.-..|++++|+..|.+++.. ...+++.....+...+...+-+
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~R 62 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDR 62 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
No 492
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=43.62 E-value=1.6e+02 Score=23.18 Aligned_cols=81 Identities=7% Similarity=-0.009 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
+..+|....+.+++-.++-.|++++....+-...... ...+.-.-.+....++|..+...|+.+=.+++++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~-------el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEI-------ELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccc-------cHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 3456777777788888888888887765332100000 000000122456778999999999999999999755
Q ss_pred H----hcCCCCH
Q 007775 471 E----AISSYSA 478 (590)
Q Consensus 471 ~----~~~p~~~ 478 (590)
. .+-|..+
T Consensus 77 SE~VltLiPQCp 88 (140)
T PF10952_consen 77 SEKVLTLIPQCP 88 (140)
T ss_pred HHHHHHhccCCC
Confidence 4 4556543
No 493
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.91 E-value=2.2e+02 Score=24.44 Aligned_cols=63 Identities=19% Similarity=0.052 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhCCCCh--------HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDL--------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~--------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 363 (590)
++.|+..++..- +-.+... -+-.....++.+.|.+++|.+.+++... +|++. .....|..+-.
T Consensus 85 LESAl~v~~~I~-~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~-~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIE-KEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQ-KLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCch-hHHHHHHHHHH
Confidence 556666666554 3222210 1122345678899999999999999988 77765 44444444433
No 494
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.12 E-value=1.7e+02 Score=23.16 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=54.2
Q ss_pred cCHHHHHHHHHHHHcccCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhH
Q 007775 331 RKLNAAHYYAKMLLKLEGGSNL----KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG 406 (590)
Q Consensus 331 g~~~~A~~~~~~~l~~~p~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~ 406 (590)
+.-..-..++++++....++.. .-+..+-..|.. ..+++.++|..+....-....+..|...|..+...|++++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444555667776654433210 122222222222 2338899999988876545778999999999999999999
Q ss_pred HHHHHHHHH
Q 007775 407 AVETYTHLL 415 (590)
Q Consensus 407 A~~~~~~~l 415 (590)
|.++|+.++
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999998764
No 495
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=40.15 E-value=3.9e+02 Score=26.69 Aligned_cols=107 Identities=14% Similarity=0.044 Sum_probs=74.1
Q ss_pred hhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCCh
Q 007775 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG---IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (590)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~ 231 (590)
+..|-.+.-...++.......+.+.+...+-+.-.. ..-.+.+.+.+.+.++..|..++++.+++.-+.-+.-|++.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 444555555556666666666777777766553211 11123344678889999999999999999988778889988
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 007775 232 PALLIASKICGEYPDLAEEGATFASRALECLG 263 (590)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~ 263 (590)
...+++-.+. ..|++..|.++...+....-
T Consensus 140 s~n~Lmd~fl--~~~~~~~A~~V~~~~~lQe~ 169 (429)
T PF10037_consen 140 SFNLLMDHFL--KKGNYKSAAKVATEMMLQEE 169 (429)
T ss_pred hHHHHHHHHh--hcccHHHHHHHHHHHHHhhc
Confidence 8777665443 67788899999887766443
No 496
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=40.12 E-value=1.6e+02 Score=22.51 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGL 493 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 493 (590)
......|.+-...|++..|.+...++-+..+..+-.+..-+..-..+||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3444555666667777777777777766544444444444555554443
No 497
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=39.65 E-value=3.3e+02 Score=25.67 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=0.0
Q ss_pred hhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--------
Q 007775 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT-------- 382 (590)
Q Consensus 311 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------- 382 (590)
.+.|...+....+-..+ ..+++.+.++.+++.+..+|--. +..+..+.++.+.| ++.+...+...+...
T Consensus 94 ~L~~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWL-Dgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~ 170 (301)
T TIGR03362 94 RLAPPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWL-DGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLL 170 (301)
T ss_pred cCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChh
Q ss_pred -----------CCCCchHHHHHH----------------------------HHHHHHhcCHhHHHHHHHHHHHHHhhhhh
Q 007775 383 -----------GKWEQGELLRTK----------------------------AKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (590)
Q Consensus 383 -----------~~~~~~~~~~~l----------------------------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 423 (590)
+ .....|..- +......+..++|+..++..+....+.
T Consensus 171 ~L~F~DGtPFad--~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~-- 246 (301)
T TIGR03362 171 ELKFSDGTPFAD--DETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREP-- 246 (301)
T ss_pred hcccCCCCCCCC--HHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCCh--
Q ss_pred cccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 424 TFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
.........++.++...|.++-|...|+...+
T Consensus 247 -----------------R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 247 -----------------RERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred -----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.49 E-value=1.6e+02 Score=22.06 Aligned_cols=52 Identities=15% Similarity=-0.052 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 300 ~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
.-.+.++++-.+.-+--|-.+-.+|.+|...|+.+.|.+-|+.--.+.|.+.
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 3344455544122233456677788899999999999998888878888865
No 499
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=39.21 E-value=6.1e+02 Score=28.62 Aligned_cols=129 Identities=18% Similarity=0.061 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcc--CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007775 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (590)
Q Consensus 300 ~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 377 (590)
.--..+.+++ .........+..+-.+|.+.+ ++++|+....+..+.++.....+.. .+++ .-++-++|+.
T Consensus 796 ~ICdair~~l-~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alk---yl~f----LvDvn~Ly~~ 867 (928)
T PF04762_consen 796 KICDAIRKAL-EKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALK---YLCF----LVDVNKLYDV 867 (928)
T ss_pred HHHHHHHHHh-cccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHh---Hhee----eccHHHHHHH
Confidence 3334444444 323344455667777888888 8899998888887664432212221 1111 2345666777
Q ss_pred HHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhc
Q 007775 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINL 457 (590)
Q Consensus 378 a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 457 (590)
|+.... .-..+..+...+.++.|=+..+++.-++.+. ...-.+-..+
T Consensus 868 ALG~YD------l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~---------------------------~rry~ID~hL 914 (928)
T PF04762_consen 868 ALGTYD------LELALMVAQQSQKDPKEYLPFLQELQKLPPL---------------------------YRRYKIDDHL 914 (928)
T ss_pred HhhhcC------HHHHHHHHHHhccChHHHHHHHHHHHhCChh---------------------------heeeeHhhhh
Confidence 776653 2234555666778888888888776665321 1222344557
Q ss_pred CChHHHHHHHHH
Q 007775 458 SQWHDAEICLSK 469 (590)
Q Consensus 458 g~~~~A~~~~~~ 469 (590)
++|++|+..+.+
T Consensus 915 kRy~kAL~~L~~ 926 (928)
T PF04762_consen 915 KRYEKALRHLSA 926 (928)
T ss_pred CCHHHHHHHHHh
Confidence 888888877754
No 500
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=38.96 E-value=4.7e+02 Score=27.19 Aligned_cols=157 Identities=17% Similarity=0.070 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHH
Q 007775 368 YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVW 447 (590)
Q Consensus 368 ~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (590)
|..|.++++.++...|.. ++..-|+.++|+...++.... .......
T Consensus 300 yk~a~KYLR~al~s~p~v-----------lLl~~~~l~eal~~~e~~c~~-----------------------~~~~lpi 345 (547)
T PF14929_consen 300 YKYAVKYLRLALQSNPPV-----------LLLIGGRLKEALNELEKFCIS-----------------------STCALPI 345 (547)
T ss_pred HHHHHHHHHHHhcCCCCe-----------EEeccccHHHHHHHHHHhccC-----------------------CCccchH
Q ss_pred HHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH-
Q 007775 448 LDLAFIYINLS--QWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK- 524 (590)
Q Consensus 448 ~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 524 (590)
...+.++...+ ....=..+|+..++++|........+...+...-...+=++...--+.+. ...++|..++.++.+
T Consensus 346 ~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~l~~ 424 (547)
T PF14929_consen 346 RLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLV-PSHPIWLEFVSCFLKN 424 (547)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHhc
Q ss_pred cCCCchHHHHHHHHHHHhh---------cCCCHHHHHHHHHHHHHh
Q 007775 525 LSDQSNAVIRSFLMAALRL---------DGMNSSAWYNLGLFYKSQ 561 (590)
Q Consensus 525 ~g~~~l~~A~~~~~~a~~~---------~p~~~~~~~~l~~~~~~~ 561 (590)
.++++ .-.+....++++ ...+..+|..+.....+.
T Consensus 425 ~~~~~--~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 425 PSRFE--DKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred ccccc--ccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHh
Done!