Query 007775
Match_columns 590
No_of_seqs 1158 out of 3553
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 10:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-43 1.3E-47 367.4 44.0 440 65-586 86-585 (597)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-42 8E-47 341.1 43.2 379 133-563 10-388 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.5E-43 2.9E-47 344.2 39.5 371 167-587 5-375 (388)
4 2xpi_A Anaphase-promoting comp 100.0 9.2E-39 3.1E-43 334.3 41.1 399 132-586 94-551 (597)
5 2gw1_A Mitochondrial precursor 100.0 8.1E-38 2.8E-42 321.0 33.1 273 271-586 186-484 (514)
6 3fp2_A TPR repeat-containing p 100.0 9.4E-37 3.2E-41 314.9 33.5 257 297-585 217-496 (537)
7 2gw1_A Mitochondrial precursor 100.0 5E-36 1.7E-40 307.6 38.8 422 64-556 7-491 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 5.2E-36 1.8E-40 302.0 36.6 373 178-585 9-415 (450)
9 3fp2_A TPR repeat-containing p 100.0 3.5E-35 1.2E-39 303.1 36.6 456 2-552 17-500 (537)
10 2y4t_A DNAJ homolog subfamily 100.0 5.2E-35 1.8E-39 294.7 34.9 376 155-571 20-445 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 1.3E-33 4.5E-38 275.2 36.9 335 194-563 2-355 (359)
12 4g1t_A Interferon-induced prot 100.0 1.3E-33 4.5E-38 286.2 33.5 373 159-588 49-467 (472)
13 3ieg_A DNAJ homolog subfamily 100.0 8.1E-33 2.8E-37 269.6 36.1 308 231-586 3-341 (359)
14 4g1t_A Interferon-induced prot 100.0 4.4E-33 1.5E-37 282.4 33.9 389 64-556 52-472 (472)
15 3hym_B Cell division cycle pro 100.0 3.3E-31 1.1E-35 255.1 32.7 308 186-529 13-322 (330)
16 3hym_B Cell division cycle pro 100.0 5.2E-31 1.8E-35 253.7 31.2 294 225-563 16-320 (330)
17 1fch_A Peroxisomal targeting s 100.0 8.3E-32 2.8E-36 263.6 24.0 297 244-582 37-361 (368)
18 4eqf_A PEX5-related protein; a 100.0 7.9E-30 2.7E-34 249.2 25.9 269 272-580 66-356 (365)
19 1fch_A Peroxisomal targeting s 100.0 6.3E-30 2.2E-34 250.2 25.1 294 204-543 34-359 (368)
20 2ooe_A Cleavage stimulation fa 100.0 5.1E-28 1.7E-32 248.3 39.1 381 154-583 6-495 (530)
21 2xm6_A Protein corresponding t 100.0 2.7E-27 9.3E-32 240.3 43.4 357 158-583 36-435 (490)
22 3cv0_A Peroxisome targeting si 100.0 2.1E-29 7.3E-34 242.0 24.6 272 272-585 22-320 (327)
23 2xm6_A Protein corresponding t 100.0 1E-26 3.6E-31 236.0 44.7 338 160-561 74-453 (490)
24 2h6f_A Protein farnesyltransfe 100.0 5.1E-29 1.8E-33 240.7 22.7 249 308-585 89-353 (382)
25 4eqf_A PEX5-related protein; a 100.0 7.7E-29 2.6E-33 242.1 23.3 262 303-585 48-315 (365)
26 2h6f_A Protein farnesyltransfe 100.0 2.6E-28 9E-33 235.7 26.2 250 272-561 98-366 (382)
27 3u4t_A TPR repeat-containing p 100.0 5.4E-27 1.8E-31 218.9 25.0 243 316-586 2-256 (272)
28 3cv0_A Peroxisome targeting si 100.0 4.4E-27 1.5E-31 225.9 23.5 255 247-545 36-317 (327)
29 2ooe_A Cleavage stimulation fa 100.0 1.2E-25 4.3E-30 230.5 35.7 351 184-586 2-460 (530)
30 2pl2_A Hypothetical conserved 100.0 9.1E-27 3.1E-31 208.5 21.6 196 353-578 6-212 (217)
31 2pl2_A Hypothetical conserved 100.0 1.3E-26 4.5E-31 207.5 22.2 200 314-541 2-212 (217)
32 3uq3_A Heat shock protein STI1 100.0 4.9E-26 1.7E-30 210.5 26.7 239 271-557 5-256 (258)
33 3uq3_A Heat shock protein STI1 99.9 3.6E-26 1.2E-30 211.4 22.8 227 316-581 4-237 (258)
34 3mkr_A Coatomer subunit epsilo 99.9 4.7E-26 1.6E-30 213.1 23.3 252 298-586 15-270 (291)
35 3u4t_A TPR repeat-containing p 99.9 2.6E-26 8.8E-31 214.3 20.6 253 272-563 4-270 (272)
36 3mkr_A Coatomer subunit epsilo 99.9 1.6E-25 5.5E-30 209.5 23.3 273 245-574 12-288 (291)
37 4a1s_A PINS, partner of inscut 99.9 1.3E-25 4.5E-30 223.0 21.7 279 270-582 47-374 (411)
38 3sf4_A G-protein-signaling mod 99.9 2.6E-25 9E-30 220.4 23.3 279 272-584 10-340 (406)
39 3e4b_A ALGK; tetratricopeptide 99.9 3.5E-25 1.2E-29 221.0 22.5 376 133-583 14-424 (452)
40 3sf4_A G-protein-signaling mod 99.9 3.4E-25 1.2E-29 219.6 22.2 287 246-563 23-362 (406)
41 3ro2_A PINS homolog, G-protein 99.9 6.4E-25 2.2E-29 211.5 23.1 279 272-584 6-336 (338)
42 3e4b_A ALGK; tetratricopeptide 99.9 1.8E-24 6.3E-29 215.9 26.7 172 298-506 195-386 (452)
43 2q7f_A YRRB protein; TPR, prot 99.9 2.2E-24 7.5E-29 197.4 21.6 221 316-563 22-242 (243)
44 1ouv_A Conserved hypothetical 99.9 4.3E-23 1.5E-27 192.3 27.6 231 313-585 2-256 (273)
45 3vtx_A MAMA; tetratricopeptide 99.9 6.7E-24 2.3E-28 185.0 20.3 173 386-585 3-175 (184)
46 2q7f_A YRRB protein; TPR, prot 99.9 6.5E-24 2.2E-28 194.3 20.6 221 269-526 21-241 (243)
47 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.2E-24 1.4E-28 199.5 18.9 241 298-574 21-269 (275)
48 2ho1_A Type 4 fimbrial biogene 99.9 3E-23 1E-27 191.0 24.0 218 311-553 30-248 (252)
49 2vq2_A PILW, putative fimbrial 99.9 7.4E-23 2.5E-27 184.7 25.3 217 313-554 4-222 (225)
50 2ho1_A Type 4 fimbrial biogene 99.9 3.2E-23 1.1E-27 190.8 22.8 212 346-586 31-244 (252)
51 2vq2_A PILW, putative fimbrial 99.9 9E-23 3.1E-27 184.1 23.8 211 346-586 3-217 (225)
52 4a1s_A PINS, partner of inscut 99.9 1.8E-23 6.1E-28 207.6 20.5 285 193-546 46-375 (411)
53 3vtx_A MAMA; tetratricopeptide 99.9 5.8E-23 2E-27 179.1 21.1 172 315-511 3-174 (184)
54 1xi4_A Clathrin heavy chain; a 99.9 1.5E-20 5E-25 198.7 42.8 398 69-562 991-1415(1630)
55 1ouv_A Conserved hypothetical 99.9 7.7E-22 2.6E-26 183.9 30.1 229 272-551 7-259 (273)
56 3ro2_A PINS homolog, G-protein 99.9 4.7E-23 1.6E-27 198.4 21.8 270 246-546 19-335 (338)
57 4abn_A Tetratricopeptide repea 99.9 1.5E-23 5.2E-28 210.6 18.9 215 331-576 82-317 (474)
58 2ond_A Cleavage stimulation fa 99.9 1.5E-22 5.2E-27 191.9 23.6 222 334-585 33-275 (308)
59 3ulq_A Response regulator aspa 99.9 1.7E-22 5.8E-27 198.3 24.1 242 319-583 105-371 (383)
60 4abn_A Tetratricopeptide repea 99.9 4E-23 1.4E-27 207.5 19.9 213 298-539 84-317 (474)
61 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.2E-22 4.2E-27 189.5 21.0 229 325-585 13-249 (275)
62 2ond_A Cleavage stimulation fa 99.9 1.7E-21 5.7E-26 184.7 28.9 259 249-556 33-305 (308)
63 3nf1_A KLC 1, kinesin light ch 99.9 6.9E-23 2.4E-27 195.0 15.7 251 313-583 23-310 (311)
64 4i17_A Hypothetical protein; T 99.9 3.3E-21 1.1E-25 174.3 25.3 220 314-560 4-226 (228)
65 4gyw_A UDP-N-acetylglucosamine 99.9 2.5E-22 8.5E-27 209.0 19.7 171 386-583 7-177 (723)
66 3ulq_A Response regulator aspa 99.9 4.9E-22 1.7E-26 195.0 20.1 243 272-545 104-370 (383)
67 3q15_A PSP28, response regulat 99.9 1.3E-20 4.5E-25 184.4 26.6 240 319-581 103-366 (378)
68 4gyw_A UDP-N-acetylglucosamine 99.9 1.3E-21 4.3E-26 203.7 19.6 172 347-545 5-176 (723)
69 4i17_A Hypothetical protein; T 99.9 1.5E-21 5.2E-26 176.5 17.8 202 348-586 4-215 (228)
70 1xi4_A Clathrin heavy chain; a 99.9 7.6E-20 2.6E-24 193.3 31.8 296 201-576 1055-1380(1630)
71 3dra_A Protein farnesyltransfe 99.9 1.2E-19 4E-24 167.9 25.4 224 332-584 48-292 (306)
72 3qky_A Outer membrane assembly 99.9 1.6E-20 5.6E-25 173.5 19.5 200 345-571 9-252 (261)
73 4e6h_A MRNA 3'-END-processing 99.9 8.4E-18 2.9E-22 172.9 41.2 420 153-585 58-575 (679)
74 1qqe_A Vesicular transport pro 99.9 3.7E-20 1.3E-24 173.8 21.4 243 300-584 3-273 (292)
75 3nf1_A KLC 1, kinesin light ch 99.9 4.5E-21 1.5E-25 182.4 15.0 249 269-546 25-310 (311)
76 1hz4_A MALT regulatory protein 99.9 4.7E-19 1.6E-23 173.2 29.5 280 270-583 13-325 (373)
77 3dra_A Protein farnesyltransfe 99.8 4.4E-19 1.5E-23 164.1 26.5 232 298-557 49-302 (306)
78 2pzi_A Probable serine/threoni 99.8 2.6E-20 9E-25 195.4 20.8 188 311-527 388-583 (681)
79 1b89_A Protein (clathrin heavy 99.8 1.7E-21 6E-26 185.2 10.6 326 171-582 13-359 (449)
80 1qqe_A Vesicular transport pro 99.8 1.1E-19 3.7E-24 170.6 22.8 256 250-558 3-284 (292)
81 3qky_A Outer membrane assembly 99.8 6.4E-20 2.2E-24 169.5 20.9 213 311-529 9-249 (261)
82 3q15_A PSP28, response regulat 99.8 2.8E-19 9.6E-24 174.9 25.6 241 272-544 102-366 (378)
83 3urz_A Uncharacterized protein 99.8 4E-20 1.4E-24 164.0 17.0 188 387-584 3-190 (208)
84 4ga2_A E3 SUMO-protein ligase 99.8 9.3E-21 3.2E-25 158.1 12.1 147 393-563 2-149 (150)
85 1hz4_A MALT regulatory protein 99.8 2.1E-18 7.1E-23 168.6 28.5 269 245-545 27-324 (373)
86 2pzi_A Probable serine/threoni 99.8 2.5E-20 8.4E-25 195.6 15.7 188 345-563 388-583 (681)
87 3as5_A MAMA; tetratricopeptide 99.8 1.5E-19 5.2E-24 157.4 18.2 175 386-587 6-180 (186)
88 3edt_B KLC 2, kinesin light ch 99.8 9.3E-20 3.2E-24 170.6 16.9 235 329-581 13-282 (283)
89 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.5E-18 8.5E-23 154.6 22.3 193 353-587 5-220 (225)
90 3as5_A MAMA; tetratricopeptide 99.8 1.3E-18 4.4E-23 151.4 19.8 170 318-512 9-178 (186)
91 4ga2_A E3 SUMO-protein ligase 99.8 7.5E-20 2.6E-24 152.6 10.2 145 358-526 3-148 (150)
92 3dss_A Geranylgeranyl transfer 99.8 4.1E-17 1.4E-21 151.5 27.6 228 328-583 40-307 (331)
93 3urz_A Uncharacterized protein 99.8 1.7E-18 5.9E-23 153.4 16.7 195 316-557 3-199 (208)
94 3edt_B KLC 2, kinesin light ch 99.8 2.9E-18 1E-22 160.3 17.5 229 298-544 24-282 (283)
95 1b89_A Protein (clathrin heavy 99.8 4.2E-19 1.4E-23 168.9 11.2 292 205-578 13-309 (449)
96 3dss_A Geranylgeranyl transfer 99.8 8.6E-17 3E-21 149.3 25.6 234 298-559 46-320 (331)
97 4gco_A Protein STI-1; structur 99.8 5.2E-18 1.8E-22 136.4 14.6 117 440-558 9-125 (126)
98 2yhc_A BAMD, UPF0169 lipoprote 99.8 3E-17 1E-21 147.6 20.3 193 316-548 3-218 (225)
99 4e6h_A MRNA 3'-END-processing 99.8 2.1E-15 7.3E-20 155.1 36.3 366 178-583 49-536 (679)
100 2r5s_A Uncharacterized protein 99.8 4.5E-18 1.6E-22 146.4 13.4 165 387-579 5-172 (176)
101 3gyz_A Chaperone protein IPGC; 99.8 4.5E-19 1.5E-23 146.7 6.2 116 465-585 23-138 (151)
102 3q7a_A Farnesyltransferase alp 99.8 6.9E-17 2.4E-21 150.4 21.5 232 323-582 60-334 (349)
103 2ifu_A Gamma-SNAP; membrane fu 99.8 1.6E-17 5.3E-22 157.1 16.9 227 296-572 5-253 (307)
104 3q7a_A Farnesyltransferase alp 99.8 4.1E-16 1.4E-20 145.2 25.3 232 298-557 70-346 (349)
105 2r5s_A Uncharacterized protein 99.8 1.3E-17 4.6E-22 143.5 14.3 163 353-542 7-172 (176)
106 2ifu_A Gamma-SNAP; membrane fu 99.7 4.5E-17 1.5E-21 153.9 18.8 191 320-529 39-249 (307)
107 3qou_A Protein YBBN; thioredox 99.7 3.7E-17 1.3E-21 152.6 17.7 167 386-579 115-283 (287)
108 4gco_A Protein STI-1; structur 99.7 2.3E-17 7.7E-22 132.7 13.4 120 379-522 6-125 (126)
109 3qou_A Protein YBBN; thioredox 99.7 8.8E-17 3E-21 150.1 18.9 169 313-506 113-283 (287)
110 4f3v_A ESX-1 secretion system 99.7 3.6E-17 1.2E-21 147.3 12.9 210 320-557 10-250 (282)
111 2vsy_A XCC0866; transferase, g 99.7 9.3E-17 3.2E-21 165.9 17.4 158 401-585 2-162 (568)
112 3gyz_A Chaperone protein IPGC; 99.7 2.3E-17 7.8E-22 136.4 9.6 109 438-548 30-138 (151)
113 2vsy_A XCC0866; transferase, g 99.7 1.8E-16 6.2E-21 163.8 18.0 161 298-484 5-168 (568)
114 4f3v_A ESX-1 secretion system 99.7 8.1E-17 2.8E-21 145.0 12.9 200 298-523 22-252 (282)
115 2vgx_A Chaperone SYCD; alterna 99.7 2.8E-17 9.5E-22 136.4 9.2 110 439-550 16-125 (148)
116 3rjv_A Putative SEL1 repeat pr 99.7 6.2E-16 2.1E-20 137.2 17.8 127 444-579 50-196 (212)
117 3rjv_A Putative SEL1 repeat pr 99.7 1.6E-15 5.4E-20 134.6 19.5 174 336-544 5-198 (212)
118 2fo7_A Synthetic consensus TPR 99.7 1.1E-15 3.8E-20 124.9 16.4 135 445-584 2-136 (136)
119 2c2l_A CHIP, carboxy terminus 99.7 2.3E-16 8E-21 146.6 11.9 103 314-419 1-103 (281)
120 2vgx_A Chaperone SYCD; alterna 99.7 2E-16 6.7E-21 131.3 9.7 119 463-586 6-124 (148)
121 2c2l_A CHIP, carboxy terminus 99.7 5.8E-16 2E-20 143.9 14.0 203 348-585 1-204 (281)
122 1p5q_A FKBP52, FK506-binding p 99.7 2.1E-16 7.2E-21 150.9 11.0 153 401-580 126-294 (336)
123 2xcb_A PCRH, regulatory protei 99.7 2.6E-16 9E-21 129.9 9.7 121 437-559 11-131 (142)
124 1dce_A Protein (RAB geranylger 99.7 7.4E-16 2.5E-20 156.6 14.2 191 367-584 44-271 (567)
125 1p5q_A FKBP52, FK506-binding p 99.6 1.9E-17 6.4E-22 158.2 1.7 196 298-542 81-293 (336)
126 3upv_A Heat shock protein STI1 99.6 4.1E-15 1.4E-19 119.9 14.7 117 442-560 2-124 (126)
127 2e2e_A Formate-dependent nitri 99.6 2.1E-15 7.1E-20 130.0 12.7 128 454-586 20-150 (177)
128 1a17_A Serine/threonine protei 99.6 7.9E-15 2.7E-19 124.7 16.3 137 442-583 11-149 (166)
129 2fo7_A Synthetic consensus TPR 99.6 1.1E-14 3.7E-19 118.9 16.5 135 389-547 2-136 (136)
130 1hh8_A P67PHOX, NCF-2, neutrop 99.6 7.1E-15 2.4E-19 130.9 16.2 134 443-584 5-154 (213)
131 2xcb_A PCRH, regulatory protei 99.6 4.1E-15 1.4E-19 122.7 13.2 117 465-586 5-121 (142)
132 3mv2_B Coatomer subunit epsilo 99.6 1.7E-13 6E-18 125.0 24.4 191 336-552 85-291 (310)
133 2fbn_A 70 kDa peptidylprolyl i 99.6 1.7E-15 5.8E-20 133.1 10.6 162 392-580 8-186 (198)
134 1dce_A Protein (RAB geranylger 99.6 3.9E-15 1.3E-19 151.3 14.5 187 333-546 45-270 (567)
135 2lni_A Stress-induced-phosphop 99.6 1.1E-14 3.9E-19 118.5 14.5 124 438-563 10-133 (133)
136 2vyi_A SGTA protein; chaperone 99.6 2.2E-14 7.5E-19 116.3 15.1 122 440-563 8-129 (131)
137 3sz7_A HSC70 cochaperone (SGT) 99.6 1.4E-14 4.7E-19 123.0 14.3 119 439-559 6-124 (164)
138 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.4E-14 4.9E-19 128.9 14.7 131 354-511 8-154 (213)
139 2qfc_A PLCR protein; TPR, HTH, 99.6 5.1E-14 1.7E-18 132.1 18.0 175 387-582 74-268 (293)
140 2hr2_A Hypothetical protein; a 99.6 9.7E-15 3.3E-19 118.5 10.7 116 444-586 11-137 (159)
141 3mv2_B Coatomer subunit epsilo 99.6 4.1E-13 1.4E-17 122.5 22.0 257 171-481 23-290 (310)
142 4gcn_A Protein STI-1; structur 99.6 2.7E-14 9.3E-19 114.8 12.6 112 441-555 5-123 (127)
143 2uy1_A Cleavage stimulation fa 99.6 4.7E-12 1.6E-16 126.7 31.5 217 334-580 196-413 (493)
144 3upv_A Heat shock protein STI1 99.6 4.8E-14 1.6E-18 113.6 13.9 117 386-524 2-124 (126)
145 2e2e_A Formate-dependent nitri 99.6 5.3E-14 1.8E-18 121.0 14.8 128 364-515 22-152 (177)
146 3u3w_A Transcriptional activat 99.6 2.8E-13 9.6E-18 127.0 20.7 173 320-507 78-266 (293)
147 1hxi_A PEX5, peroxisome target 99.6 2.5E-14 8.4E-19 113.9 11.0 101 480-585 19-119 (121)
148 2qfc_A PLCR protein; TPR, HTH, 99.5 2.1E-13 7.1E-18 127.9 18.9 179 314-507 72-266 (293)
149 2fbn_A 70 kDa peptidylprolyl i 99.5 4.9E-15 1.7E-19 130.2 7.2 167 358-534 10-176 (198)
150 3sz7_A HSC70 cochaperone (SGT) 99.5 4E-14 1.4E-18 120.0 12.1 108 474-586 7-114 (164)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 9.2E-15 3.1E-19 145.7 9.1 151 400-577 246-412 (457)
152 3u3w_A Transcriptional activat 99.5 7.3E-14 2.5E-18 131.0 14.6 170 390-582 77-268 (293)
153 1na0_A Designed protein CTPR3; 99.5 2.6E-13 8.9E-18 108.9 15.8 118 443-562 8-125 (125)
154 4gcn_A Protein STI-1; structur 99.5 4.5E-14 1.5E-18 113.6 10.9 102 477-583 7-115 (127)
155 1a17_A Serine/threonine protei 99.5 2E-13 6.7E-18 116.0 15.5 133 387-543 12-146 (166)
156 3q49_B STIP1 homology and U bo 99.5 7.3E-14 2.5E-18 114.4 12.2 121 441-563 6-131 (137)
157 1elw_A TPR1-domain of HOP; HOP 99.5 2.5E-13 8.6E-18 107.7 14.9 114 444-559 4-117 (118)
158 2vyi_A SGTA protein; chaperone 99.5 2.2E-13 7.6E-18 110.3 14.8 122 386-529 10-131 (131)
159 1wao_1 Serine/threonine protei 99.5 4.8E-15 1.6E-19 148.3 5.7 143 441-588 3-158 (477)
160 2hr2_A Hypothetical protein; a 99.5 2.7E-14 9.2E-19 115.9 8.5 77 477-555 56-143 (159)
161 1hxi_A PEX5, peroxisome target 99.5 5.7E-14 2E-18 111.8 10.3 103 445-549 18-120 (121)
162 3rkv_A Putative peptidylprolyl 99.5 7.1E-14 2.4E-18 118.2 11.3 121 441-563 8-147 (162)
163 2lni_A Stress-induced-phosphop 99.5 1.5E-13 5.1E-18 111.8 12.9 121 385-527 13-133 (133)
164 3q49_B STIP1 homology and U bo 99.5 2.1E-13 7.1E-18 111.7 12.7 109 472-585 3-111 (137)
165 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 3.3E-14 1.1E-18 141.7 9.2 165 366-541 248-413 (457)
166 2kck_A TPR repeat; tetratricop 99.5 1.2E-13 4.3E-18 108.4 10.7 107 474-585 2-111 (112)
167 2if4_A ATFKBP42; FKBP-like, al 99.5 2.6E-14 8.9E-19 136.4 7.2 142 441-587 176-335 (338)
168 2dba_A Smooth muscle cell asso 99.5 4.9E-13 1.7E-17 111.0 13.6 120 439-560 23-145 (148)
169 3rkv_A Putative peptidylprolyl 99.5 5.2E-13 1.8E-17 112.8 13.3 137 387-527 10-147 (162)
170 1na0_A Designed protein CTPR3; 99.5 1.6E-12 5.4E-17 104.2 15.5 117 388-526 9-125 (125)
171 1elw_A TPR1-domain of HOP; HOP 99.5 1.8E-12 6E-17 102.7 15.4 114 387-522 3-116 (118)
172 3gw4_A Uncharacterized protein 99.5 1.3E-12 4.4E-17 115.1 15.9 162 363-544 3-177 (203)
173 3gw4_A Uncharacterized protein 99.5 1.6E-12 5.4E-17 114.5 16.3 166 327-509 2-178 (203)
174 2xev_A YBGF; tetratricopeptide 99.4 1.3E-12 4.3E-17 105.7 13.4 117 445-563 3-125 (129)
175 1elr_A TPR2A-domain of HOP; HO 99.4 8.8E-13 3E-17 106.8 12.1 119 442-563 2-127 (131)
176 2uy1_A Cleavage stimulation fa 99.4 4.3E-10 1.5E-14 112.5 32.8 209 298-542 195-412 (493)
177 4b4t_Q 26S proteasome regulato 99.4 3.5E-12 1.2E-16 127.1 17.3 209 317-543 4-245 (434)
178 2if4_A ATFKBP42; FKBP-like, al 99.4 5.2E-13 1.8E-17 127.4 10.7 103 445-549 231-334 (338)
179 2kck_A TPR repeat; tetratricop 99.4 8.3E-13 2.8E-17 103.6 9.8 106 441-548 3-111 (112)
180 1ihg_A Cyclophilin 40; ppiase 99.4 1.8E-12 6E-17 125.0 13.7 125 444-573 223-363 (370)
181 1wao_1 Serine/threonine protei 99.4 3.8E-14 1.3E-18 141.8 2.0 123 392-538 10-134 (477)
182 1zu2_A Mitochondrial import re 99.4 4.4E-13 1.5E-17 108.5 7.6 99 455-555 13-132 (158)
183 2dba_A Smooth muscle cell asso 99.4 2.6E-12 8.9E-17 106.6 12.6 110 472-586 22-134 (148)
184 2xev_A YBGF; tetratricopeptide 99.4 1.6E-12 5.4E-17 105.1 10.9 103 479-586 3-111 (129)
185 3k9i_A BH0479 protein; putativ 99.4 4.8E-13 1.6E-17 105.9 7.5 106 456-563 2-110 (117)
186 4b4t_Q 26S proteasome regulato 99.4 4.5E-12 1.6E-16 126.2 16.2 209 353-582 5-247 (434)
187 3ro3_A PINS homolog, G-protein 99.4 1.9E-12 6.5E-17 109.3 10.2 139 441-584 6-162 (164)
188 3k9i_A BH0479 protein; putativ 99.4 2.2E-12 7.4E-17 102.1 9.6 109 400-527 2-110 (117)
189 1ihg_A Cyclophilin 40; ppiase 99.4 8.3E-12 2.8E-16 120.3 14.7 139 389-535 224-362 (370)
190 1zu2_A Mitochondrial import re 99.3 2.3E-12 7.8E-17 104.3 8.4 93 399-513 13-126 (158)
191 1elr_A TPR2A-domain of HOP; HO 99.3 2.3E-11 7.7E-16 98.3 13.3 122 353-492 5-126 (131)
192 3ro3_A PINS homolog, G-protein 99.3 2.3E-11 7.9E-16 102.5 13.9 140 318-473 10-158 (164)
193 4g26_A Pentatricopeptide repea 99.3 2.9E-10 9.9E-15 113.7 20.1 178 66-264 29-207 (501)
194 2l6j_A TPR repeat-containing p 99.2 1.8E-11 6.1E-16 95.8 6.6 93 444-538 4-102 (111)
195 1na3_A Designed protein CTPR2; 99.2 2.1E-10 7.1E-15 85.8 11.3 86 441-526 6-91 (91)
196 2kat_A Uncharacterized protein 99.2 1E-10 3.5E-15 92.0 10.0 101 461-563 2-104 (115)
197 2l6j_A TPR repeat-containing p 99.2 1.6E-11 5.4E-16 96.0 4.7 96 477-577 3-104 (111)
198 1na3_A Designed protein CTPR2; 99.1 2.5E-10 8.5E-15 85.4 9.9 85 476-562 7-91 (91)
199 2kat_A Uncharacterized protein 99.1 4.6E-10 1.6E-14 88.3 10.7 93 300-394 3-95 (115)
200 2kc7_A BFR218_protein; tetratr 99.1 1.4E-10 4.6E-15 88.5 6.9 93 482-587 4-97 (99)
201 3ma5_A Tetratricopeptide repea 99.0 1.2E-09 4E-14 83.3 9.3 89 312-401 2-90 (100)
202 3ma5_A Tetratricopeptide repea 99.0 5.7E-10 1.9E-14 85.0 7.0 89 473-563 2-92 (100)
203 2kc7_A BFR218_protein; tetratr 99.0 5.7E-10 2E-14 85.0 5.9 91 448-548 4-95 (99)
204 3n71_A Histone lysine methyltr 99.0 2.5E-09 8.5E-14 105.9 11.7 136 393-544 314-465 (490)
205 3n71_A Histone lysine methyltr 99.0 7E-09 2.4E-13 102.7 14.5 135 358-506 315-463 (490)
206 1klx_A Cysteine rich protein B 98.9 7.5E-09 2.6E-13 84.0 11.8 111 458-581 9-127 (138)
207 4g26_A Pentatricopeptide repea 98.9 3.1E-07 1.1E-11 91.8 25.9 176 197-418 28-205 (501)
208 3u64_A Protein TP_0956; tetrat 98.9 1.5E-08 5.3E-13 89.8 14.0 86 494-584 179-273 (301)
209 1klx_A Cysteine rich protein B 98.9 1.1E-08 3.9E-13 82.9 12.2 121 402-556 9-137 (138)
210 3ly7_A Transcriptional activat 98.8 3.1E-08 1E-12 92.0 12.9 132 448-585 200-344 (372)
211 3bee_A Putative YFRE protein; 98.8 4E-08 1.4E-12 72.7 10.3 73 508-585 2-77 (93)
212 3u64_A Protein TP_0956; tetrat 98.7 7.6E-07 2.6E-11 79.1 18.3 109 345-476 146-272 (301)
213 3ly7_A Transcriptional activat 98.7 3.5E-07 1.2E-11 85.0 15.9 155 342-548 185-344 (372)
214 3bee_A Putative YFRE protein; 98.7 2E-07 6.7E-12 69.0 10.6 71 441-511 3-76 (93)
215 1pc2_A Mitochondria fission pr 98.6 3.7E-07 1.3E-11 72.9 10.4 97 460-558 14-115 (152)
216 3qww_A SET and MYND domain-con 98.5 5.4E-07 1.9E-11 87.7 12.0 102 400-515 310-424 (433)
217 1pc2_A Mitochondria fission pr 98.5 2.2E-07 7.5E-12 74.2 7.5 89 493-586 13-106 (152)
218 2v5f_A Prolyl 4-hydroxylase su 98.5 8.6E-07 3E-11 67.5 9.6 76 444-519 5-87 (104)
219 3qww_A SET and MYND domain-con 98.4 1.8E-06 6.2E-11 84.0 13.3 104 364-481 310-424 (433)
220 2v5f_A Prolyl 4-hydroxylase su 98.4 1.2E-06 4.2E-11 66.7 9.7 78 477-556 4-88 (104)
221 3qwp_A SET and MYND domain-con 98.4 3.1E-06 1.1E-10 82.6 13.7 115 360-488 295-423 (429)
222 3qwp_A SET and MYND domain-con 98.3 4.6E-06 1.6E-10 81.4 13.0 119 324-456 294-425 (429)
223 1nzn_A CGI-135 protein, fissio 98.0 6.9E-05 2.3E-09 57.5 10.7 97 460-558 17-118 (126)
224 4h7y_A Dual specificity protei 97.9 0.00036 1.2E-08 54.6 13.8 127 386-528 11-143 (161)
225 4h7y_A Dual specificity protei 97.9 9.4E-05 3.2E-09 57.8 10.4 108 440-550 9-130 (161)
226 1nzn_A CGI-135 protein, fissio 97.8 0.00029 9.8E-09 54.0 11.7 91 298-391 17-111 (126)
227 3spa_A Mtrpol, DNA-directed RN 97.7 0.00021 7.3E-09 74.8 11.9 128 62-221 126-258 (1134)
228 3ffl_A Anaphase-promoting comp 97.7 0.00055 1.9E-08 55.0 11.4 114 318-454 21-165 (167)
229 3ffl_A Anaphase-promoting comp 97.6 0.0018 6.2E-08 52.0 13.6 143 388-558 20-165 (167)
230 3spa_A Mtrpol, DNA-directed RN 97.2 0.0016 5.5E-08 68.4 11.1 101 128-229 133-235 (1134)
231 3o48_A Mitochondria fission 1 97.1 0.003 1E-07 48.5 9.1 80 477-558 39-122 (134)
232 1y8m_A FIS1; mitochondria, unk 97.0 0.0055 1.9E-07 47.8 9.8 81 475-557 36-120 (144)
233 3o48_A Mitochondria fission 1 97.0 0.018 6.1E-07 44.2 12.2 78 272-359 41-119 (134)
234 1y8m_A FIS1; mitochondria, unk 97.0 0.017 5.9E-07 45.0 12.0 72 443-514 38-113 (144)
235 1qsa_A Protein (soluble lytic 96.9 0.43 1.5E-05 48.5 28.6 244 313-579 98-347 (618)
236 4gns_B Protein CSD3, chitin bi 96.6 0.026 8.8E-07 58.3 13.7 61 444-504 337-397 (754)
237 4b4t_P 26S proteasome regulato 96.3 0.9 3.1E-05 44.3 23.2 259 298-581 32-325 (445)
238 3txn_A 26S proteasome regulato 96.2 0.86 2.9E-05 43.2 24.4 174 272-474 20-211 (394)
239 4ady_A RPN2, 26S proteasome re 96.2 0.64 2.2E-05 49.1 21.2 285 202-528 381-681 (963)
240 4gns_B Protein CSD3, chitin bi 95.9 0.044 1.5E-06 56.7 11.2 116 246-378 263-397 (754)
241 1zbp_A Hypothetical protein VP 95.7 0.28 9.5E-06 43.1 13.9 121 453-585 6-134 (273)
242 3mkq_A Coatomer beta'-subunit; 95.7 0.74 2.5E-05 49.1 20.7 178 327-563 609-798 (814)
243 3mkq_B Coatomer subunit alpha; 95.7 0.45 1.5E-05 39.0 14.2 47 454-505 15-61 (177)
244 3mkq_B Coatomer subunit alpha; 95.7 0.21 7.1E-06 41.0 12.2 110 315-470 6-115 (177)
245 3txn_A 26S proteasome regulato 95.4 1.8 6.2E-05 41.0 28.3 124 249-383 76-212 (394)
246 1qsa_A Protein (soluble lytic 95.3 2.9 0.0001 42.4 28.5 197 298-503 230-438 (618)
247 2ff4_A Probable regulatory pro 95.3 0.13 4.4E-06 49.3 11.2 62 444-505 171-232 (388)
248 3mkq_A Coatomer beta'-subunit; 95.2 0.32 1.1E-05 52.0 15.7 131 360-537 607-746 (814)
249 4b4t_S RPN3, 26S proteasome re 95.2 0.73 2.5E-05 45.0 16.1 87 441-529 228-328 (523)
250 2ff4_A Probable regulatory pro 95.2 0.23 7.9E-06 47.5 12.9 112 450-579 121-233 (388)
251 1ya0_A SMG-7 transcript varian 95.0 0.13 4.6E-06 50.5 10.6 80 445-524 153-232 (497)
252 1zbp_A Hypothetical protein VP 94.9 0.78 2.7E-05 40.3 14.0 56 327-383 7-62 (273)
253 3kae_A CDC27, possible protein 94.9 1.1 3.9E-05 35.8 19.0 94 273-383 35-145 (242)
254 3kae_A CDC27, possible protein 94.7 1.3 4.5E-05 35.4 17.4 101 158-264 30-146 (242)
255 4ady_A RPN2, 26S proteasome re 94.7 1.6 5.5E-05 46.2 18.1 279 244-563 386-680 (963)
256 4fhn_B Nucleoporin NUP120; pro 94.6 4.9 0.00017 44.6 23.2 199 321-543 816-1050(1139)
257 4b4t_S RPN3, 26S proteasome re 94.3 0.079 2.7E-06 51.6 7.1 129 451-586 143-305 (523)
258 4b4t_R RPN7, 26S proteasome re 94.2 0.61 2.1E-05 45.3 13.3 62 319-380 133-196 (429)
259 1ya0_A SMG-7 transcript varian 94.1 0.23 7.7E-06 48.9 9.8 80 480-561 154-233 (497)
260 4b4t_R RPN7, 26S proteasome re 93.9 0.38 1.3E-05 46.7 11.2 98 390-506 133-236 (429)
261 3lpz_A GET4 (YOR164C homolog); 92.2 6.8 0.00023 35.9 22.9 69 191-259 132-214 (336)
262 3lvg_A Clathrin heavy chain 1; 92.2 1.5E-05 5.2E-10 75.4 -21.4 223 315-562 52-277 (624)
263 4fhn_B Nucleoporin NUP120; pro 91.9 1.5 5.1E-05 48.7 13.5 119 449-576 817-963 (1139)
264 2wpv_A GET4, UPF0363 protein Y 91.4 8 0.00027 35.1 15.3 103 294-418 112-218 (312)
265 4b4t_P 26S proteasome regulato 91.0 12 0.00041 36.3 20.9 106 353-473 138-247 (445)
266 3lvg_A Clathrin heavy chain 1; 90.9 5.5E-06 1.9E-10 78.3 -25.8 83 323-417 176-258 (624)
267 2wpv_A GET4, UPF0363 protein Y 88.7 14 0.00047 33.6 21.1 71 191-261 130-217 (312)
268 3lpz_A GET4 (YOR164C homolog); 88.1 16 0.00053 33.5 26.9 105 292-418 112-217 (336)
269 1wy6_A Hypothetical protein ST 82.3 11 0.00037 29.1 8.7 64 160-223 90-153 (172)
270 4gq2_M Nucleoporin NUP120; bet 80.5 20 0.00069 38.7 13.8 52 450-505 816-867 (950)
271 3esl_A Checkpoint serine/threo 78.2 29 0.00098 29.0 11.1 69 440-509 76-146 (202)
272 1wy6_A Hypothetical protein ST 75.7 9.5 0.00033 29.5 6.6 53 488-542 101-153 (172)
273 4gq2_M Nucleoporin NUP120; bet 73.1 34 0.0012 37.0 13.0 53 166-222 815-867 (950)
274 3esl_A Checkpoint serine/threo 69.5 48 0.0017 27.6 13.8 65 353-418 81-145 (202)
275 4a1g_A Mitotic checkpoint seri 64.9 34 0.0012 27.1 8.0 63 441-509 68-132 (152)
276 2v6y_A AAA family ATPase, P60 63.4 20 0.00068 24.9 5.8 39 6-44 7-45 (83)
277 2wvi_A Mitotic checkpoint seri 63.0 24 0.00082 28.3 6.9 30 353-382 97-126 (164)
278 3ax2_A Mitochondrial import re 60.3 25 0.00087 23.6 5.5 34 447-480 20-53 (73)
279 4aez_C MAD3, mitotic spindle c 57.8 47 0.0016 28.2 8.1 80 408-506 97-178 (223)
280 2w2u_A Hypothetical P60 katani 57.4 28 0.00094 24.2 5.6 23 70-92 26-48 (83)
281 4a5x_A MITD1, MIT domain-conta 55.4 24 0.00081 24.7 5.1 34 11-44 17-50 (86)
282 3ax2_A Mitochondrial import re 50.5 21 0.00072 24.0 3.9 29 552-583 21-49 (73)
283 2crb_A Nuclear receptor bindin 49.8 31 0.001 24.3 4.6 28 444-471 15-42 (97)
284 2v6y_A AAA family ATPase, P60 49.2 41 0.0014 23.3 5.5 22 71-92 19-40 (83)
285 2v6x_A Vacuolar protein sortin 48.1 35 0.0012 23.7 5.1 39 6-44 9-47 (85)
286 3qnk_A Putative lipoprotein; a 48.0 27 0.00094 34.6 6.2 87 6-96 105-215 (517)
287 3t5v_B Nuclear mRNA export pro 47.6 33 0.0011 33.1 6.4 31 550-583 222-253 (455)
288 2ijq_A Hypothetical protein; s 46.3 1.1E+02 0.0037 24.5 8.1 60 447-506 35-103 (161)
289 3t5v_B Nuclear mRNA export pro 46.0 2.1E+02 0.0073 27.5 11.7 66 446-511 178-254 (455)
290 2cpt_A SKD1 protein, vacuolar 44.7 41 0.0014 25.2 5.2 39 6-44 14-52 (117)
291 2qx5_A Nucleoporin NIC96; mRNA 44.6 2.7E+02 0.0093 28.4 21.8 29 552-584 540-570 (661)
292 1wfd_A Hypothetical protein 15 44.4 75 0.0026 22.5 6.4 41 70-110 22-67 (93)
293 4a5x_A MITD1, MIT domain-conta 42.2 85 0.0029 21.9 6.6 40 71-110 24-68 (86)
294 2w2u_A Hypothetical P60 katani 41.7 62 0.0021 22.4 5.4 37 8-44 17-53 (83)
295 3t5x_A PCI domain-containing p 41.2 61 0.0021 27.2 6.4 34 318-351 15-48 (203)
296 2crb_A Nuclear receptor bindin 40.1 45 0.0015 23.5 4.3 25 551-578 18-42 (97)
297 2ijq_A Hypothetical protein; s 39.5 1.4E+02 0.0049 23.7 8.2 61 321-381 36-104 (161)
298 3l22_A SUSD superfamily protei 38.4 28 0.00096 33.6 4.5 83 6-90 114-228 (441)
299 2rpa_A Katanin P60 ATPase-cont 36.8 27 0.00093 23.8 2.8 26 320-345 15-40 (78)
300 3re2_A Predicted protein; meni 36.1 2.6E+02 0.0089 25.7 10.1 30 388-417 296-325 (472)
301 3lew_A SUSD-like carbohydrate 36.1 52 0.0018 32.3 6.0 83 7-90 116-230 (495)
302 3t5x_A PCI domain-containing p 35.6 70 0.0024 26.8 5.9 79 443-529 13-96 (203)
303 1om2_A Protein (mitochondrial 34.2 39 0.0013 24.1 3.4 28 553-583 25-52 (95)
304 1om2_A Protein (mitochondrial 33.7 44 0.0015 23.8 3.6 29 448-476 24-52 (95)
305 3i4g_A SUSD-like carbohydrate 33.5 61 0.0021 32.2 6.1 87 6-93 119-228 (528)
306 3u84_A Menin; MLL, JUND, ledgf 32.7 3.2E+02 0.011 25.7 10.1 21 77-98 14-34 (550)
307 2rpa_A Katanin P60 ATPase-cont 32.3 56 0.0019 22.3 3.8 29 390-418 14-42 (78)
308 3re2_A Predicted protein; meni 32.0 2.1E+02 0.0073 26.3 8.4 27 512-540 296-322 (472)
309 3jq1_A SUSD superfamily protei 31.3 1.2E+02 0.0042 29.5 7.8 79 7-92 107-209 (481)
310 3hdx_A SUSD homolog, SUSD supe 30.2 2.9E+02 0.0098 26.8 10.2 86 7-92 109-226 (478)
311 3jys_A SUSD superfamily protei 29.9 3E+02 0.01 26.9 10.3 84 7-96 117-227 (499)
312 3ubw_A 14-3-3E, 14-3-3 protein 28.2 3E+02 0.01 24.0 16.7 36 316-351 30-65 (261)
313 2br9_A 14-3-3E, 14-3-3 protein 27.9 2.9E+02 0.0098 23.7 15.8 32 318-349 6-37 (234)
314 2dl1_A Spartin; SPG20, MIT, st 27.7 1.9E+02 0.0064 21.5 6.4 33 12-44 24-56 (116)
315 1o9d_A 14-3-3-like protein C; 27.2 3.1E+02 0.011 23.9 15.5 30 318-347 9-38 (260)
316 3bu8_A Telomeric repeat-bindin 27.1 2.8E+02 0.0096 23.3 8.2 67 298-366 88-162 (235)
317 1wfd_A Hypothetical protein 15 27.0 99 0.0034 21.9 4.6 36 9-44 14-49 (93)
318 3snx_A SUSD homolog, putative 26.3 1.2E+02 0.0042 29.3 6.7 83 7-91 104-219 (460)
319 2cwy_A Hypothetical protein TT 26.3 1.3E+02 0.0044 21.4 5.1 55 450-506 7-67 (94)
320 4gq4_A Menin; tumor suppressor 24.7 2.4E+02 0.0081 26.6 7.5 64 477-542 261-331 (489)
321 3u84_A Menin; MLL, JUND, ledgf 24.2 3.8E+02 0.013 25.3 8.7 43 533-578 298-345 (550)
322 3otn_A SUSD superfamily protei 24.0 81 0.0028 30.8 5.0 84 7-93 113-227 (482)
323 2cpt_A SKD1 protein, vacuolar 23.7 2.3E+02 0.0078 21.1 7.1 22 71-92 26-47 (117)
324 4b4t_O 26S proteasome regulato 22.8 4.7E+02 0.016 24.4 12.5 69 389-471 128-196 (393)
325 2wvi_A Mitotic checkpoint seri 22.8 2.9E+02 0.01 22.0 13.9 64 440-509 62-127 (164)
326 3rkl_A STIV-A81; 4-helix bundl 22.4 41 0.0014 21.4 1.5 24 5-28 28-51 (87)
327 3s6n_M SurviVal motor neuron p 22.3 69 0.0024 17.7 2.2 15 79-93 18-32 (37)
328 3bu8_A Telomeric repeat-bindin 21.7 3.6E+02 0.012 22.7 8.4 46 484-529 120-165 (235)
329 2vkj_A TM1634; membrane protei 20.9 95 0.0032 21.6 3.2 30 194-223 52-81 (106)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-43 Score=367.45 Aligned_cols=440 Identities=14% Similarity=0.047 Sum_probs=380.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHH
Q 007775 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (590)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 144 (590)
.+..++..+.+.|++++|+..|++|+.. .|++.+.. .++.. +...|.+++|+..
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~----~l~~~--------------------~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAF----WLAQV--------------------YCCTGDYARAKCL 139 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHH----HHHHH--------------------HHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHH----HHHHH--------------------HHHcCcHHHHHHH
Confidence 4555667888889999999999888854 23433221 12222 4445677788776
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCC----------------CCchHHHHHHHHHHHhC
Q 007775 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI----------------INRKERYHILALCYYGA 208 (590)
Q Consensus 145 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~----------------~~~~~~~~~la~~~~~~ 208 (590)
+..+ . ..|.++.+++.++.+|.++|++++|.+.|++..+.. +.++.+|+.+|.+|.+.
T Consensus 140 ~~~~-----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 140 LTKE-----D-LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHT-----C-GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHH-----h-ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 6321 1 236788899999999999999999999998765544 44688999999999999
Q ss_pred CChHHHHHHHHHhhcCCCCCCChHHHHHHHHH-------------------------------------HhcCCCCHHHH
Q 007775 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKI-------------------------------------CGEYPDLAEEG 251 (590)
Q Consensus 209 g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~-------------------------------------~~~~~~~~~~A 251 (590)
|++++|+..|++++ ..+|+++..+..++.+ .+...|++++|
T Consensus 214 g~~~~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 214 SNFDRAKECYKEAL--MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp TCHHHHHHHHHHHH--HHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 99999999999999 5778777766554321 12245677889
Q ss_pred HHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcc
Q 007775 252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR 331 (590)
Q Consensus 252 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g 331 (590)
+..++++++. |.+. .++..++.++...|+ +++|+..|++++ ..+|.+..++..++.++...|
T Consensus 292 ~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 292 EDYLSSINGL-EKSS-----DLLLCKADTLFVRSR-----------FIDVLAITTKIL-EIDPYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHHHHTSTTG-GGCH-----HHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHCTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHhhcC-CchH-----HHHHHHHHHHHHhcC-----------HHHHHHHHHHHH-HcCcccHHHHHHHHHHHHHhC
Confidence 9999888876 4333 689999999999999 999999999999 999999999999999999999
Q ss_pred CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHH
Q 007775 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (590)
Q Consensus 332 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 411 (590)
++++|+..++++++..|++. .++..++.+|...|++++|+++|+++++..| .+..++..++.++...|++++|++.|
T Consensus 354 ~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRHPEKA-VTWLAVGIYYLCVNKISEARRYFSKSSTMDP--QFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTSH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999998 9999999999999999999999999999988 78899999999999999999999999
Q ss_pred HHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007775 412 THLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKK 491 (590)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 491 (590)
+++++.. |.+..+|..++.+|...|++++|+.+|+++++..|.++.++..+|.++...
T Consensus 431 ~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 431 TTAARLF----------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHTT----------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhC----------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 9999886 556789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcc------CCCC-hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 007775 492 GLYKEAIKAFRSALNI------DPAH-VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQ 564 (590)
Q Consensus 492 g~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 564 (590)
|++++|++.|+++++. +|++ ..++..+|.++...|+++ +|+..|+++++.+|+++.+|..+|.+|...|+
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~- 565 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD--AAIDALNQGLLLSTNDANVHTAIALVYLHKKI- 565 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-
Confidence 9999999999999987 5654 679999999999999999 99999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhccccCCCC
Q 007775 565 SSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 565 ~~~~~A~~~~~~al~l~p~~~~ 586 (590)
+++|.++|+++++++|+++.
T Consensus 566 --~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 566 --PGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp --HHHHHHHHHHHHHHCTTCHH
T ss_pred --HHHHHHHHHHHHhcCCCChH
Confidence 99999999999999999864
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-42 Score=341.09 Aligned_cols=379 Identities=17% Similarity=0.119 Sum_probs=319.1
Q ss_pred ccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChH
Q 007775 133 VPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL 212 (590)
Q Consensus 133 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~ 212 (590)
...|++++|+..+. ..+...|.++.++..++.++...|+++.|...++++++..|.++..|+.+|.++...|+++
T Consensus 10 ~~~g~~~~A~~~~~-----~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 10 YQAGDFEAAERHCM-----QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHCCCHHHHHHHHH-----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 44567788877663 3344568888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChH
Q 007775 213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (590)
Q Consensus 213 ~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (590)
+|+..|++++ ..+|+++..+..++..+. ..|++++|+..++++++..|+.. .++..+|.++...|+
T Consensus 85 ~A~~~~~~al--~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~------ 150 (388)
T 1w3b_A 85 EAIEHYRHAL--RLKPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNPDLY-----CVRSDLGNLLKALGR------ 150 (388)
T ss_dssp HHHHHHHHHH--HHCTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCTTCT-----HHHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHH--HcCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHccC------
Confidence 8888888888 577888877777775544 44566688888888888888776 588888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHH
Q 007775 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (590)
Q Consensus 293 ~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 372 (590)
+++|+..|++++ ..+|.++.++..+|.++...|++++|+..|+++++.+|++. .++..+|.++...|++++|+
T Consensus 151 -----~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 151 -----LEEAKACYLKAI-ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-DAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp -----HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTCTTHHH
T ss_pred -----HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHH
Confidence 888888888888 88888888888888888888888888888888888888887 88888888888888888888
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHH
Q 007775 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAF 452 (590)
Q Consensus 373 ~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 452 (590)
..+++++...| ++..++..+|.++...|++++|+..|+++++.. |.++.++..+|.
T Consensus 224 ~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~l~~ 279 (388)
T 1w3b_A 224 AAYLRALSLSP--NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ----------------------PHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----------------------SSCHHHHHHHHH
T ss_pred HHHHHHHhhCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------CCCHHHHHHHHH
Confidence 88888888887 778888888888888888888888888888876 555778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHH
Q 007775 453 IYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAV 532 (590)
Q Consensus 453 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~ 532 (590)
++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+++ +
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~ 357 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ--E 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH--H
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--H
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888 8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 533 IRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 533 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
|+..|+++++.+|+++.+|+.+|.++..+|+
T Consensus 358 A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 8888888888888888888888888887764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.5e-43 Score=344.24 Aligned_cols=371 Identities=17% Similarity=0.083 Sum_probs=354.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCC
Q 007775 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD 246 (590)
Q Consensus 167 l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~ 246 (590)
++..+.+.|++++|...+++++...|+++..+..+|.++...|++++|+..+++++ ..+|.++..+..++.++. ..|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~--~~~p~~~~~~~~lg~~~~-~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI--KQNPLLAEAYSNLGNVYK-ERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCchHHHHHHHHHHH-HCC
Confidence 56778899999999999999999999999999999999999999999999999999 688999999999986654 556
Q ss_pred CHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 007775 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (590)
Q Consensus 247 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~ 326 (590)
++++|+..|++++...|+.. .++..+|.++...|+ +++|+..|++++ ..+|++..++..+|.+
T Consensus 82 ~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~-----------~~~A~~~~~~al-~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFI-----DGYINLAAALVAAGD-----------MEGAVQAYVSAL-QYNPDLYCVRSDLGNL 144 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHSC-----------SSHHHHHHHHHH-HHCTTCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchH-----HHHHHHHHHHHHcCC-----------HHHHHHHHHHHH-HhCCCcHHHHHHHHHH
Confidence 88899999999999999876 589999999999999 999999999999 9999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhH
Q 007775 327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG 406 (590)
Q Consensus 327 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~ 406 (590)
+...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..|+++++..| ++..++..+|.++...|++++
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999998 9999999999999999999999999999998 889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007775 407 AVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGV 486 (590)
Q Consensus 407 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 486 (590)
|+..|++++... |.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 222 A~~~~~~al~~~----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 222 AVAAYLRALSLS----------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHhhC----------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 999999999997 5668999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCc
Q 007775 487 LYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSS 566 (590)
Q Consensus 487 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 566 (590)
++...|++++|+..|+++++..|+++.++..+|.++...|+++ +|+..|+++++.+|+++.++..+|.++...|+
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--- 354 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE--EAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--- 354 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH--HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccccCCCCC
Q 007775 567 KLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 567 ~~~A~~~~~~al~l~p~~~~~ 587 (590)
+++|+..|+++++++|+++.+
T Consensus 355 ~~~A~~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 355 LQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp CHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHH
Confidence 999999999999999987643
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-39 Score=334.34 Aligned_cols=399 Identities=13% Similarity=0.026 Sum_probs=351.8
Q ss_pred cccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCh
Q 007775 132 FVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGED 211 (590)
Q Consensus 132 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~ 211 (590)
+...|.+++|+..+..+. +..| +...+..++.++.+.|+++.|...|++++.. +.++.+|+.++.+|...|++
T Consensus 94 ~~~~g~~~~A~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVL-----DITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHTTCHHHHHHHHHHHH-----HHHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHccCchHHHHHHHHHH-----hhCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhH
Confidence 455678899998875543 2234 5577788999999999999999999998654 67899999999999999999
Q ss_pred HHHHHHHHHhhcCC--------------CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHH
Q 007775 212 LVALNLLRTLLSGS--------------EDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL 277 (590)
Q Consensus 212 ~~A~~~~~~~l~~~--------------~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l 277 (590)
++|+.+|++..... ..|.++..+..++.. +...|++++|+..|+++++.+|... .++..+
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l 240 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV-YTNLSNFDRAKECYKEALMVDAKCY-----EAFDQL 240 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHH
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCchhh-----HHHHHH
Confidence 99999999754211 002346677777755 4456788999999999999999866 344444
Q ss_pred H--------------------------------------HHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHH
Q 007775 278 G--------------------------------------ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (590)
Q Consensus 278 ~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~ 319 (590)
+ ..|...|+ +++|+..|++++ .. |.++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~A~~~~~~~~-~~-~~~~~~ 307 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE-----------LRRAEDYLSSIN-GL-EKSSDL 307 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH-----------HHHHHHHHHTST-TG-GGCHHH
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch-----------HHHHHHHHHHhh-cC-CchHHH
Confidence 3 34445555 999999999998 66 788999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~ 399 (590)
+..++.++...|++++|+.+|+++++.+|++. .++..++.++...|++++|...++++++..| .+..++..+|.+|.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNL-DVYPLHLASLHESGEKNKLYLISNDLVDRHP--EKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC-TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 9999999999999999999999999999888 88999999999999
Q ss_pred HhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH
Q 007775 400 VQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS 479 (590)
Q Consensus 400 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 479 (590)
..|++++|+..|+++++.. |.+..+|..++.+|...|++++|+..|++++...|+++.
T Consensus 385 ~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD----------------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HhccHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 9999999999999999986 566889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh------cCCC-HHHHH
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL------DGMN-SSAWY 552 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~------~p~~-~~~~~ 552 (590)
++..+|.++...|++++|++.|+++++..|+++.++..+|.++.+.|+++ +|+..|+++++. +|++ ..+|.
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ--TAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999998 5654 78999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 553 NLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 553 ~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
.+|.++...|+ +++|++.|+++++++|+++.
T Consensus 521 ~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 521 NLGHAYRKLKM---YDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHhcC---HHHHHHHHHHHHHhCCCChH
Confidence 99999999999 99999999999999998753
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-38 Score=320.96 Aligned_cols=273 Identities=16% Similarity=0.147 Sum_probs=254.5
Q ss_pred hHHHHHHHHHHhh---chhhccChHHHHHHHHHHHHHHHHHHHh-----h--C-------CCChHHHHHHHHHHHHccCH
Q 007775 271 STANCLLGISLSA---QSKVAITDFDRATRQAKALQALVSAARS-----T--N-------MRDLSILYRLSLEYAEQRKL 333 (590)
Q Consensus 271 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~--~-------p~~~~~~~~la~~~~~~g~~ 333 (590)
..++..+|.++.. .|+ +++|+..|++++ . . . |.++.++..+|.++...|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~-----------~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPES-----------YDKADESFTKAA-RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTH-----------HHHHHHHHHHHH-HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHhhhhcc-----------HHHHHHHHHHHH-HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 3566777776665 788 999999999999 7 4 3 44467899999999999999
Q ss_pred HHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHH
Q 007775 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (590)
Q Consensus 334 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (590)
++|+..++++++.+|. . .++..+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..|++
T Consensus 254 ~~A~~~~~~~l~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR-V-NSYIYMALIMADRNDSTEYYNYFDKALKLDS--NNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHHHCCC-H-HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT--TCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-H-HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc--CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999 7 9999999999999999999999999999998 7788999999999999999999999999
Q ss_pred HHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 007775 414 LLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGL 493 (590)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 493 (590)
+++.. |.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 330 ~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 330 AKELD----------------------PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHTC----------------------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC
T ss_pred HHHhC----------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC
Confidence 99987 45578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChh------hHHHHHHHHHH---cCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 007775 494 YKEAIKAFRSALNIDPAHVP------SLISTAVVLRK---LSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQ 564 (590)
Q Consensus 494 ~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 564 (590)
+++|+..|++++...|+++. ++..+|.++.. .|+++ +|+..|++++..+|+++.++..+|.++...|+
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~- 464 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI--EATNLLEKASKLDPRSEQAKIGLAQMKLQQED- 464 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH--HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC-
Confidence 99999999999999988865 99999999999 99998 99999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhccccCCCC
Q 007775 565 SSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 565 ~~~~~A~~~~~~al~l~p~~~~ 586 (590)
+++|...|+++++++|+++.
T Consensus 465 --~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 465 --IDEAITLFEESADLARTMEE 484 (514)
T ss_dssp --HHHHHHHHHHHHHHCSSHHH
T ss_pred --HHHHHHHHHHHHHhccccHH
Confidence 99999999999999998753
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=9.4e-37 Score=314.85 Aligned_cols=257 Identities=17% Similarity=0.158 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHHHHhhCCCChH-------HHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChH
Q 007775 297 RQAKALQALVSAARSTNMRDLS-------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (590)
Q Consensus 297 ~~~~A~~~~~~a~~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~ 369 (590)
.+++|+..|++++ ..+|.++. ++..+|.++...|++++|+..++++++.+|+ . .++..+|.++...|+++
T Consensus 217 ~~~~A~~~~~~~l-~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 217 LLTKSTDMYHSLL-SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P-NSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHH-C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H-HHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHH-HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c-hHHHHHHHHHHHhcCHH
Confidence 4899999999999 99999865 5778889999999999999999999999999 6 89999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHH
Q 007775 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLD 449 (590)
Q Consensus 370 ~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (590)
+|+..++++++..| .++.++..+|.++...|++++|+..|+++++.. |.+..++..
T Consensus 294 ~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------~~~~~~~~~ 349 (537)
T 3fp2_A 294 EFFKFFQKAVDLNP--EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN----------------------PENVYPYIQ 349 (537)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCSHHHHH
T ss_pred HHHHHHHHHhccCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHH
Confidence 99999999999998 789999999999999999999999999999997 455789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh------HHHHHHHHH
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS------LISTAVVLR 523 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~ 523 (590)
+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|+..|+++++..|++... +..+|.++.
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988766544 456678898
Q ss_pred Hc----------CCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 524 KL----------SDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 524 ~~----------g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
.. |+++ +|+.+|+++++.+|+++.++..+|.++...|+ +++|+.+|++++++.|+++
T Consensus 430 ~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 430 RQSSQDPTQLDEEKFN--AAIKLLTKACELDPRSEQAKIGLAQLKLQMEK---IDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHTC----CCHHHHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--CH
T ss_pred HHhhccchhhhHhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCcH
Confidence 88 9988 99999999999999999999999999999999 9999999999999999865
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=307.59 Aligned_cols=422 Identities=11% Similarity=0.012 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHH
Q 007775 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (590)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 143 (590)
.++...|..+.+.|++++|+..|++++... |++.. ...++.. +...|++++|+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~~la~~--------------------~~~~g~~~~A~~ 60 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVF----YSNLSAC--------------------YVSVGDLKKVVE 60 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHH----HHHHHHH--------------------HHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHH----HHhHHHH--------------------HHHHhhHHHHHH
Confidence 456677899999999999999999998872 23221 1112222 223345556655
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHH-----
Q 007775 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLL----- 218 (590)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~----- 218 (590)
.+.. ++...|.++.++..++.++...|++++|...|++++...|.+...................+.+.+
T Consensus 61 ~~~~-----al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (514)
T 2gw1_A 61 MSTK-----ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT 135 (514)
T ss_dssp HHHH-----HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHH-----HhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5532 223346666666666666666666666666666666555544332222222111111111111110
Q ss_pred --------------------------------HHhhcC------CCCCCChHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 007775 219 --------------------------------RTLLSG------SEDPKCLPALLIASKICGE--YPDLAEEGATFASRA 258 (590)
Q Consensus 219 --------------------------------~~~l~~------~~~p~~~~~~~~~a~~~~~--~~~~~~~A~~~~~~~ 258 (590)
...... -..|++...++..+...+. ..|++++|+..++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp ---------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred HHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000000 0013335556666644433 478899999999999
Q ss_pred HH-----H--cCCCC--cchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 007775 259 LE-----C--LGDGC--DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE 329 (590)
Q Consensus 259 l~-----~--~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~ 329 (590)
++ . .|++. ......++..+|.++...|+ +++|+..|++++ ...|. +.++..+|.++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~A~~~~~~~l-~~~~~-~~~~~~l~~~~~~ 282 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND-----------PLGAHEDIKKAI-ELFPR-VNSYIYMALIMAD 282 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC-----------HHHHHHHHHHHH-HHCCC-HHHHHHHHHHHHT
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-hhCcc-HHHHHHHHHHHHH
Confidence 99 5 44432 13445689999999999999 999999999999 99999 9999999999999
Q ss_pred ccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHH
Q 007775 330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409 (590)
Q Consensus 330 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 409 (590)
.|++++|+..++++++.+|.+. .++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+.
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNS-SVYYHRGQMNFILQNYDQAGKDFDKAKELDP--ENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCT-HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS--SCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh--hhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999998 778899999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH------HHHH
Q 007775 410 TYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS------KCHA 483 (590)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~------~~~~ 483 (590)
.++++++.. |.++.++..+|.++...|++++|+.++++++...|.++. ++..
T Consensus 360 ~~~~~~~~~----------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (514)
T 2gw1_A 360 LFSEAKRKF----------------------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417 (514)
T ss_dssp HHHHHHHHS----------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH
T ss_pred HHHHHHHHc----------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 999999987 455789999999999999999999999999999988865 9999
Q ss_pred HHHHHHH---cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 007775 484 TGVLYEK---KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGL 556 (590)
Q Consensus 484 l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~ 556 (590)
+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|+++ +|...|+++++.+|+++.++..+..
T Consensus 418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID--EAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhccccHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999 9999999999999999998877643
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=5.2e-36 Score=302.04 Aligned_cols=373 Identities=16% Similarity=0.067 Sum_probs=311.8
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007775 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASR 257 (590)
Q Consensus 178 ~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~ 257 (590)
..+...+.+++...|.++..|+.+|..+...|++++|+..|++++ ...|.++..+..++..+ ...|++++|+..+++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVF-LAMGKSKAALPDLTK 85 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence 344566777788889999999999999999999999999999999 57888888888888554 456788899999999
Q ss_pred HHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh---HHHHHH-----------
Q 007775 258 ALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---SILYRL----------- 323 (590)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~---~~~~~l----------- 323 (590)
+++..|+.. .++..+|.++...|+ +++|+..|++++ ..+|.+. .++..+
T Consensus 86 al~~~p~~~-----~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 86 VIQLKMDFT-----AARLQRGHLLLKQGK-----------LDEAEDDFKKVL-KSNPSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp HHHHCTTCH-----HHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcH-----HHHHHHHHHHHHcCC-----------HHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 999998876 689999999999999 999999999999 9999888 776655
Q ss_pred -HHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc
Q 007775 324 -SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (590)
Q Consensus 324 -a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g 402 (590)
|.++...|++++|+..|+++++..|.+. .++..+|.++...|++++|+..|+++++..| .++.++..+|.++...|
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAASKLKN--DNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Confidence 6669999999999999999999999998 9999999999999999999999999999998 88999999999999999
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH---
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS--- 479 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~--- 479 (590)
++++|+..|++++...|+....+..... -.....+..+|.++...|++++|+.+|++++...|.++.
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 295 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQ----------VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV 295 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHH
Confidence 9999999999999987543211110000 001122244499999999999999999999999999854
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHH-
Q 007775 480 -KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLF- 557 (590)
Q Consensus 480 -~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~- 557 (590)
.+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|+++ +|+..|+++++++|+++.++..++.+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD--EAIQDYETAQEHNENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999 99999999999999999999999955
Q ss_pred -----------HHHhCC--CCchHHHHHHHHH-HhccccCCC
Q 007775 558 -----------YKSQGT--QSSKLEAAECFEA-AASLEETAP 585 (590)
Q Consensus 558 -----------~~~~g~--~~~~~~A~~~~~~-al~l~p~~~ 585 (590)
|...|. ..+.+++.+.|++ +++..|++.
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 444551 1126788999997 888988764
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=3.5e-35 Score=303.05 Aligned_cols=456 Identities=12% Similarity=0.028 Sum_probs=343.9
Q ss_pred chhHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhhcCCCCCCCccccchHHHHHHHHHHHHHHHHhcCChhH
Q 007775 2 SIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRE 81 (590)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (590)
+.......+++++.+|.++...|++++|+..|++++... |. + ..++..++.+|.+.|++++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~------~-----~~~~~~la~~~~~~g~~~~ 77 (537)
T 3fp2_A 17 SPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--------PN------E-----PVFYSNISACYISTGDLEK 77 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--------TT------C-----HHHHHHHHHHHHHHTCHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--------CC------C-----cHHHHHHHHHHHHcCCHHH
Confidence 455566789999999999999999999999999998854 22 1 2467778899999999999
Q ss_pred HHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHHHHHHHHHHhhhcCCch
Q 007775 82 TIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDP 161 (590)
Q Consensus 82 A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 161 (590)
|+..|++++.. +|.... ....++.. +...|++++|+..+. .+...|...
T Consensus 78 A~~~~~~al~~----~p~~~~-~~~~la~~--------------------~~~~g~~~~A~~~~~------~~~~~~~~~ 126 (537)
T 3fp2_A 78 VIEFTTKALEI----KPDHSK-ALLRRASA--------------------NESLGNFTDAMFDLS------VLSLNGDFD 126 (537)
T ss_dssp HHHHHHHHHHH----CTTCHH-HHHHHHHH--------------------HHHHTCHHHHHHHHH------HHC------
T ss_pred HHHHHHHHHhc----CCchHH-HHHHHHHH--------------------HHHcCCHHHHHHHHH------HHhcCCCCC
Confidence 99999999887 222211 11112222 233345666665542 111112211
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchH---HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHH
Q 007775 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE---RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (590)
Q Consensus 162 ~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a 238 (590)
. .....+...+....+...+++++...|.... ........+....+.+.++..+.+.. ...+..........
T Consensus 127 ~---~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 201 (537)
T 3fp2_A 127 G---ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS--NYDTAYALLSDALQ 201 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCC--SSCSSHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcc--ccccHHHHHHHHHH
Confidence 1 1122334444556666667666654332211 11222333455566666655555544 33343333333343
Q ss_pred HHHhcCC-------CCHHHHHHHHHHHHHHcCCCCcch--hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHH
Q 007775 239 KICGEYP-------DLAEEGATFASRALECLGDGCDQM--ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (590)
Q Consensus 239 ~~~~~~~-------~~~~~A~~~~~~~l~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 309 (590)
.++.... +.+++|+..++++++..|++.... .+.++..+|.++...|+ +++|+..|++++
T Consensus 202 ~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~A~~~~~~~~ 270 (537)
T 3fp2_A 202 RLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN-----------LLDAQVLLQESI 270 (537)
T ss_dssp HHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc-----------HHHHHHHHHHHH
Confidence 3332222 367899999999999999875322 24578899999999999 999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchH
Q 007775 310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (590)
Q Consensus 310 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 389 (590)
..+|. +.++..+|.++...|++++|+.+++++++.+|++. .++..+|.++...|++++|+..++++++..| .+..
T Consensus 271 -~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~ 345 (537)
T 3fp2_A 271 -NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP-PTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--ENVY 345 (537)
T ss_dssp -HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCSH
T ss_pred -hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHH
Confidence 99998 99999999999999999999999999999999998 9999999999999999999999999999998 7788
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007775 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSK 469 (590)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 469 (590)
++..+|.++...|++++|+..++++++.. |.++.++..+|.++...|++++|+..|++
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKF----------------------PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999997 55678999999999999999999999999
Q ss_pred HHhcCCCCHHH------HHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHH
Q 007775 470 SEAISSYSASK------CHATGVLYEKK----------GLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVI 533 (590)
Q Consensus 470 a~~~~p~~~~~------~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A 533 (590)
++...|.++.. +..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|+++ +|
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~--~A 481 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID--EA 481 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH--HH
Confidence 99988776443 56678899998 99999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhcCCCHHHHH
Q 007775 534 RSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 534 ~~~~~~a~~~~p~~~~~~~ 552 (590)
+.+|++++++.|+++....
T Consensus 482 ~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 482 IELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999999887654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=5.2e-35 Score=294.71 Aligned_cols=376 Identities=11% Similarity=0.044 Sum_probs=326.6
Q ss_pred hhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHH
Q 007775 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (590)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~ 234 (590)
...|.++..+..++..+.+.|+++.|...|++++...|.++.+|+.+|.++...|++++|+..|++++ ...|+++.++
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~ 97 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI--QLKMDFTAAR 97 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCcHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999 6789999998
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---cchhh-------HHHHHHHHHHhhchhhccChHHHHHHHHHHHHH
Q 007775 235 LIASKICGEYPDLAEEGATFASRALECLGDGC---DQMES-------TANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (590)
Q Consensus 235 ~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~ 304 (590)
..++.++ ...|++++|+..++++++..|.+. ..... ..+..+|.++...|+ +++|+..
T Consensus 98 ~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~A~~~ 165 (450)
T 2y4t_A 98 LQRGHLL-LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-----------YTAAIAF 165 (450)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------HHHHHHH
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------HHHHHHH
Confidence 8888654 456788999999999999888754 21111 124455778999999 9999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC
Q 007775 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (590)
Q Consensus 305 ~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 384 (590)
|++++ ...|.++.++..+|.++...|++++|+..|+++++.+|.+. .++..+|.++...|++++|+..|++++...|
T Consensus 166 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p- 242 (450)
T 2y4t_A 166 LDKIL-EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT-EAFYKISTLYYQLGDHELSLSEVRECLKLDQ- 242 (450)
T ss_dssp HHHHH-HHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHH-HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 99999 99999999999999999999999999999999999999998 9999999999999999999999999999998
Q ss_pred CCchHHHHHH------------HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHH
Q 007775 385 WEQGELLRTK------------AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAF 452 (590)
Q Consensus 385 ~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 452 (590)
++...+..+ |.++...|++++|+..|+++++..|.++ .....++..+|.
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~------------------~~~~~~~~~l~~ 303 (450)
T 2y4t_A 243 -DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA------------------EYTVRSKERICH 303 (450)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH------------------HHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch------------------HHHHHHHHHHHH
Confidence 666666555 9999999999999999999999874321 112458999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH-----------
Q 007775 453 IYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV----------- 521 (590)
Q Consensus 453 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~----------- 521 (590)
++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred -HHHcC-----CCchHHHHHHHHH-HHhhcCCCH----------HHHHHHHHHHHHhCCCCchHHHH
Q 007775 522 -LRKLS-----DQSNAVIRSFLMA-ALRLDGMNS----------SAWYNLGLFYKSQGTQSSKLEAA 571 (590)
Q Consensus 522 -~~~~g-----~~~l~~A~~~~~~-a~~~~p~~~----------~~~~~l~~~~~~~g~~~~~~~A~ 571 (590)
|...| +.+ ++.+.|++ +++.+|++. ..+..++.+|..+|+ .+++.
T Consensus 384 ~y~~lg~~~~~~~~--~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d---~~~r~ 445 (450)
T 2y4t_A 384 YYKILGVKRNAKKQ--EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD---PEMRK 445 (450)
T ss_dssp SGGGSCSSTTCCTT--HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG---GGGC-
T ss_pred HHHHhCCCccCCHH--HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC---HHHHH
Confidence 44445 445 78888886 788777631 256678888888888 66543
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.3e-33 Score=275.23 Aligned_cols=335 Identities=16% Similarity=0.048 Sum_probs=287.1
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHH
Q 007775 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (590)
Q Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 273 (590)
+++.|+.+|..+...|++++|+..|++++ ..+|+++..+...+.++ ...|++++|+..++++++..|... .+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~-----~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVF-LAMGKSKAALPDLTKVIALKMDFT-----AA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCH-----HH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCcccHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCcc-----hH
Confidence 46678888888888888888888888888 57777777777777443 455677788888888888887766 58
Q ss_pred HHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCC---CChHHHHHH------------HHHHHHccCHHHHHH
Q 007775 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM---RDLSILYRL------------SLEYAEQRKLNAAHY 338 (590)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~ 338 (590)
+..+|.++...|+ +++|+..|++++ ...| .++.++..+ |.++...|++++|+.
T Consensus 74 ~~~l~~~~~~~~~-----------~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 74 RLQRGHLLLKQGK-----------LDEAEDDFKKVL-KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHHHHHHHHTC-----------HHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCC-----------hHHHHHHHHHHH-hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 8888888888888 889999999888 8888 777777666 789999999999999
Q ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 007775 339 YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 339 ~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
.++++++..|.+. .++..+|.++...|++++|+..++++++..| .++.++..+|.++...|++++|+..|+++++..
T Consensus 142 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 142 FLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAASKLKS--DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCch-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999998 9999999999999999999999999999998 889999999999999999999999999999998
Q ss_pred hhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCH
Q 007775 419 QVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS----KCHATGVLYEKKGLY 494 (590)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~g~~ 494 (590)
|.....+..... .........+|.++...|++++|+..+++++...|+++. ++..+|.++...|++
T Consensus 219 ~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 219 QDHKRCFAHYKQ----------VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp TTCHHHHHHHHH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH
Confidence 644221110000 001223445689999999999999999999999999874 466799999999999
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 495 KEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 495 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
++|+..|+++++.+|+++.++..+|.++...|+++ +|+..|+++++.+|+++.++..++.++...++
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD--EAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999998877654
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=286.25 Aligned_cols=373 Identities=14% Similarity=0.036 Sum_probs=290.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHcCC---------CCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----
Q 007775 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPG---------IINRKERYHILALCYYGAGEDLVALNLLRTLLSG----- 224 (590)
Q Consensus 159 ~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 224 (590)
....+|+.|+.++...|++++|.+.|++++.. .|....+|.++|.+|...|++++|+..|++++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34668999999999999999999999998753 4566788999999999999999999999998732
Q ss_pred -CCCCCChHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhc---hhhccChHHHHHHHH
Q 007775 225 -SEDPKCLPALLIASKICG-EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ---SKVAITDFDRATRQA 299 (590)
Q Consensus 225 -~~~p~~~~~~~~~a~~~~-~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~ 299 (590)
...+..+..+...+.... ...+++++|+.+|+++++.+|+++ .++..++.++... ++ .+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~-----~~~~~~~~~~~~l~~~~~-----------~~ 192 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP-----EFTSGLAIASYRLDNWPP-----------SQ 192 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHHHHSCC-----------CC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCchH-----------HH
Confidence 123344555554443322 234578999999999999999987 5777777775544 44 56
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 007775 300 KALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (590)
Q Consensus 300 ~A~~~~~~a~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 375 (590)
+|+..|++++ .++|.++.++..+|..+.. .|++++|+.++++++..+|.+. .++..+|.++...|++++|+..+
T Consensus 193 ~al~~~~~al-~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 193 NAIDPLRQAI-RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT-DVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp CTHHHHHHHH-HHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH-HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHh-hcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH-HHHHHHHHHHHHcCchHHHHHHH
Confidence 8999999999 9999999999988877655 4678899999999999999999 99999999999999999999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHHh-------------------cCHhHHHHHHHHHHHHHhhhhhccccccccccccc
Q 007775 376 NAALDQTGKWEQGELLRTKAKVQLVQ-------------------GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSA 436 (590)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 436 (590)
+++++..| +++.++..+|.+|... +.+++|+..++++++.+
T Consensus 271 ~~al~~~p--~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------------------ 330 (472)
T 4g1t_A 271 KKALEYIP--NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN------------------ 330 (472)
T ss_dssp HHHHHHST--TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHhCC--ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC------------------
Confidence 99999999 8899999999988653 34677888888888886
Q ss_pred ccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHhccCCCCh
Q 007775 437 NHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS---KCHATGVL-YEKKGLYKEAIKAFRSALNIDPAHV 512 (590)
Q Consensus 437 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~ 512 (590)
|....++..+|.++...|++++|+.+|++++.+.|++.. ++..+|.+ ....|++++|+..|++++++.|++.
T Consensus 331 ----~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 331 ----DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp ----TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred ----CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 555778999999999999999999999999999887643 35666654 4578999999999999999999876
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCCCC
Q 007775 513 PSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPVEP 588 (590)
Q Consensus 513 ~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~~ 588 (590)
..... .. .+...+++++..+|+++.+|..+|.+|...|+ +++|+++|++|+++.|.+|.+.
T Consensus 407 ~~~~~----------~~--~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~---~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 407 EKEKM----------KD--KLQKIAKMRLSKNGADSEALHVLAFLQELNEK---MQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHH----------HH--HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH---CC--------------------
T ss_pred HHHHH----------HH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCcHh
Confidence 43322 23 67778889999999999999999999999999 9999999999999999999764
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=8.1e-33 Score=269.63 Aligned_cols=308 Identities=16% Similarity=0.084 Sum_probs=284.7
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHH
Q 007775 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (590)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 310 (590)
+..++..+..+. ..|++++|+..++++++..|.+. .++..+|.++...|+ +++|+..|++++
T Consensus 3 ~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~a~~~~~~~~-----------~~~A~~~~~~~~- 64 (359)
T 3ieg_A 3 VEKHLELGKKLL-AAGQLADALSQFHAAVDGDPDNY-----IAYYRRATVFLAMGK-----------SKAALPDLTKVI- 64 (359)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTC-----------HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccH-----HHHHHHHHHHHHccC-----------HHHHHHHHHHHH-
Confidence 455666775544 56688899999999999999876 699999999999999 999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccC---CCcHHHHHHH------------HHHHHHcCChHHHHHHH
Q 007775 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG---GSNLKGWLLM------------ARILSAQKRYEDAETIL 375 (590)
Q Consensus 311 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~l------------a~~~~~~g~~~~A~~~~ 375 (590)
..+|.++.++..+|.++...|++++|+..++++++..| ++. .++..+ |.++...|++++|+..+
T Consensus 65 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 65 ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK-EAESQLVKADEMQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH-HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999999999999999999999999999999 777 777776 78999999999999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHH
Q 007775 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYI 455 (590)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 455 (590)
+++++..| .++.++..+|.++...|++++|+..++++++.. |.++.++..+|.++.
T Consensus 144 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 144 DKILEVCV--WDAELRELRAECFIKEGEPRKAISDLKAASKLK----------------------SDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------------SCCHHHHHHHHHHHH
T ss_pred HHHHHhCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHH
Confidence 99999998 789999999999999999999999999999886 566899999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHhccCCCChh----hHHHHH
Q 007775 456 NLSQWHDAEICLSKSEAISSYSASKCH------------ATGVLYEKKGLYKEAIKAFRSALNIDPAHVP----SLISTA 519 (590)
Q Consensus 456 ~~g~~~~A~~~~~~a~~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~ 519 (590)
..|++++|+..++++++..|+++.++. .+|.++...|++++|+..++++++..|+++. ++..+|
T Consensus 200 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC 279 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 999999999999999999999988654 3488899999999999999999999999874 466799
Q ss_pred HHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 520 VVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 520 ~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
.++...|+++ +|+..++++++.+|+++.++..+|.++...|+ +++|+..|+++++++|+++.
T Consensus 280 ~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 280 HCFSKDEKPV--EAIRICSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHccCHH--HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChH
Confidence 9999999999 99999999999999999999999999999999 99999999999999998864
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-33 Score=282.43 Aligned_cols=389 Identities=12% Similarity=-0.005 Sum_probs=292.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHH
Q 007775 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (590)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 143 (590)
..++.||.++...|++++|+..|++++.. .+..
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----~~~~------------------------------------------- 84 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEEL----IQQE------------------------------------------- 84 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HHhc-------------------------------------------
Confidence 46788999999999999999999999876 1000
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCC--------CCCchHHHHHHHHHHHh--CCChHH
Q 007775 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYG--AGEDLV 213 (590)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~--------~~~~~~~~~~la~~~~~--~g~~~~ 213 (590)
......|....++.+++.+|...|++++|...+++++.. .+..+.++..+|.++.. .+++++
T Consensus 85 --------~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~ 156 (472)
T 4g1t_A 85 --------HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNER 156 (472)
T ss_dssp --------SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHH
T ss_pred --------CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHH
Confidence 000112445567889999999999999999999988642 33557788888877765 457999
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccCh
Q 007775 214 ALNLLRTLLSGSEDPKCLPALLIASKIC--GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (590)
Q Consensus 214 A~~~~~~~l~~~~~p~~~~~~~~~a~~~--~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (590)
|+..|++++ ..+|+++.++...+.+. ....+..++|+..++++++++|++. .++..+|..+...+..
T Consensus 157 A~~~~~kal--~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~-----~~~~~l~~~~~~~~~~---- 225 (472)
T 4g1t_A 157 AKVCFEKAL--EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ-----YLKVLLALKLHKMREE---- 225 (472)
T ss_dssp HHHHHHHHH--HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH-----HHHHHHHHHHHHCC------
T ss_pred HHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch-----HHHHHHHHHHHHHHhh----
Confidence 999999999 68899988887766543 3345667789999999999999877 4777777655544320
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHc------
Q 007775 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ------ 365 (590)
Q Consensus 292 ~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~------ 365 (590)
.+.+++|+..+++++ ..+|.++.++..+|.+|...|++++|+..++++++.+|++. .++..+|.+|...
T Consensus 226 ---~~~~~~a~~~~~~al-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~y~~~~~~~~~ 300 (472)
T 4g1t_A 226 ---GEEEGEGEKLVEEAL-EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA-YLHCQIGCCYRAKVFQVMN 300 (472)
T ss_dssp -------CHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHhhh
Confidence 111789999999999 99999999999999999999999999999999999999998 9999999988653
Q ss_pred -------------CChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc
Q 007775 366 -------------KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY 432 (590)
Q Consensus 366 -------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 432 (590)
+.+++|+..++++++..| ....++..+|.++...|++++|+..|+++++..+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~----------- 367 (472)
T 4g1t_A 301 LRENGMYGKRKLLELIGHAVAHLKKADEAND--NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP----------- 367 (472)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHCT--TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH-----------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC-----------
Confidence 347889999999999998 778889999999999999999999999999876421
Q ss_pred ccccccccchHHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007775 433 KGSANHARSLELEVWLDLAFI-YINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH 511 (590)
Q Consensus 433 ~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 511 (590)
.....++..+|.+ +...|++++|+..|++++++.|++..... ....+...+++++..+|++
T Consensus 368 --------~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~ 429 (472)
T 4g1t_A 368 --------VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGAD 429 (472)
T ss_dssp --------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-C
T ss_pred --------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCC
Confidence 1223456667755 45789999999999999999999865332 2345567788999999999
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 007775 512 VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGL 556 (590)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~ 556 (590)
+.++..+|.++...|+++ +|+++|+++++..|.+|.++..+|.
T Consensus 430 ~~~~~~LG~~~~~~g~~~--~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQ--QADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 999999999999999999 9999999999999999999888774
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-31 Score=255.06 Aligned_cols=308 Identities=15% Similarity=0.100 Sum_probs=270.5
Q ss_pred HHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Q 007775 186 ELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDG 265 (590)
Q Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~ 265 (590)
..+...+.++..+..+|..++..|++++|+..|++++ ..+|.+...+...+..+ ...+++++|+..++++++..|.+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM--EKDPFHASCLPVHIGTL-VELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCTTTHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCCChhhHHHHHHHH-HHhhhHHHHHHHHHHHHHhCcCC
Confidence 4455567888899999999999999999999999999 57788777776666444 45678889999999999999988
Q ss_pred CcchhhHHHHHHHHHHhhch-hhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 007775 266 CDQMESTANCLLGISLSAQS-KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL 344 (590)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 344 (590)
. .++..+|.++...| + +++|+..|++++ ..+|.++.++..+|.++...|++++|+..+++++
T Consensus 90 ~-----~~~~~l~~~~~~~~~~-----------~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 152 (330)
T 3hym_B 90 P-----VSWFAVGCYYLMVGHK-----------NEHARRYLSKAT-TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152 (330)
T ss_dssp T-----HHHHHHHHHHHHSCSC-----------HHHHHHHHHHHH-TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHhhhh-----------HHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7 69999999999999 8 999999999999 9999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhc
Q 007775 345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (590)
Q Consensus 345 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 424 (590)
+..|++. .++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+..++++++..+.....
T Consensus 153 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 153 QLMKGCH-LPMLYIGLEYGLTNNSKLAERFFSQALSIAP--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HHTTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HhccccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 9999998 9999999999999999999999999999998 789999999999999999999999999999987543211
Q ss_pred ccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007775 425 FSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSA 504 (590)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 504 (590)
. ..|..+.++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|+.+|+++
T Consensus 230 ~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 230 V-------------TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp C-------------TTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred c-------------cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 114456789999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCChhhHHHHHHHH-HHcCCCc
Q 007775 505 LNIDPAHVPSLISTAVVL-RKLSDQS 529 (590)
Q Consensus 505 l~~~p~~~~~~~~l~~~~-~~~g~~~ 529 (590)
++++|+++.++..++.++ ...|+.+
T Consensus 297 l~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999988 5666654
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-31 Score=253.71 Aligned_cols=294 Identities=12% Similarity=0.024 Sum_probs=253.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHH
Q 007775 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (590)
Q Consensus 225 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~ 304 (590)
...|.++...+..+..++.. |++++|+..++++++..|.+. .++..++.++...|+ +++|+..
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~-----~~~~~~~~~~~~~~~-----------~~~A~~~ 78 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYN-CDFKMCYKLTSVVMEKDPFHA-----SCLPVHIGTLVELNK-----------ANELFYL 78 (330)
T ss_dssp ----CCCTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCT-----TTHHHHHHHHHHHTC-----------HHHHHHH
T ss_pred hhchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCh-----hhHHHHHHHHHHhhh-----------HHHHHHH
Confidence 35567888888888776655 688899999999999888877 477778888888888 8899999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 007775 305 LVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 305 ~~~a~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 383 (590)
+++++ ..+|.++.++..+|.++...| ++++|+.+++++++.+|.+. .++..+|.++...|++++|+..++++++..|
T Consensus 79 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 79 SHKLV-DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG-PAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp HHHHH-HHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred HHHHH-HhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 99999 889999999999999999999 89999999999999999888 8899999999999999999999999999888
Q ss_pred CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHH
Q 007775 384 KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDA 463 (590)
Q Consensus 384 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 463 (590)
.+...+..+|.++...|++++|+..++++++.. |.++.++..+|.++...|++++|
T Consensus 157 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 157 --GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA----------------------PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp --TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----------------------CCChHHHHHHHHHHHHcccHHHH
Confidence 667778889999999999999999999988886 55578899999999999999999
Q ss_pred HHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHH
Q 007775 464 EICLSKSEAIS---------SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 464 ~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
+.++++++... |..+.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+++ +|+
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~--~A~ 290 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE--NAV 290 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH--HHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH--HHH
Confidence 99999998875 5667788999999999999999999999999999999999999999999999988 999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHH-HHhCC
Q 007775 535 SFLMAALRLDGMNSSAWYNLGLFY-KSQGT 563 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l~~~~-~~~g~ 563 (590)
.+|+++++.+|+++.++..+|.++ ...|+
T Consensus 291 ~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 999999999999999999999988 45566
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=8.3e-32 Score=263.59 Aligned_cols=297 Identities=13% Similarity=0.114 Sum_probs=260.1
Q ss_pred CCCCHHHHHH-HHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHH
Q 007775 244 YPDLAEEGAT-FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (590)
Q Consensus 244 ~~~~~~~A~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~ 322 (590)
..+++++|+. .+++++...|.++. .....++.+|.++...|+ +++|+..|++++ ..+|.++.++..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~g~-----------~~~A~~~~~~al-~~~p~~~~~~~~ 103 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPL-RDHPQPFEEGLRRLQEGD-----------LPNAVLLFEAAV-QQDPKHMEAWQY 103 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTT-TTCSSHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HSCTTCHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcc-cchHHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HhCCCCHHHHHH
Confidence 3456778888 88888887776541 122478899999999999 999999999999 999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHH----------
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR---------- 392 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---------- 392 (590)
+|.++...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+++++...| .+...+.
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKPDNQ-TALMALAVSFTNESLQRQACEILRDWLRYTP--AYAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTGGGCC----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999998 9999999999999999999999999999988 4443332
Q ss_pred ------HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHH
Q 007775 393 ------TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 393 ------~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
.++.++ ..|++++|+..|+++++..|.. .++.++..+|.++...|++++|+.+
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~--------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 181 LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS--------------------IDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp -----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS--------------------CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc--------------------ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 466666 9999999999999999997421 0588999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC
Q 007775 467 LSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~ 546 (590)
|++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +|+..|+++++..|+
T Consensus 240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR--EAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred C-----------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 547 N-----------SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 547 ~-----------~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
+ +.+|..+|.++...|+ +++|..+++++++..+
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQ---SDAYGAADARDLSTLL 361 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTC---GGGHHHHHTTCHHHHH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCC---hHhHHHhHHHHHHHHH
Confidence 8 8999999999999999 9999999998887644
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=7.9e-30 Score=249.16 Aligned_cols=269 Identities=15% Similarity=0.128 Sum_probs=243.6
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
..++.+|..+...|+ +++|+..|++++ ..+|.++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 66 ~~~~~~~~~~~~~g~-----------~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 133 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGD-----------LPVTILFMEAAI-LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133 (365)
T ss_dssp TTHHHHHHHHHHHTC-----------HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 468999999999999 999999999999 99999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHH----------HHHHHHHHhcCHhHHHHHHHHHHHHHhhh
Q 007775 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR----------TKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (590)
Q Consensus 352 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----------~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 421 (590)
.++..+|.++...|++++|+..++++++..| .+...+. .+|.++...|++++|+..|+++++..|.
T Consensus 134 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~- 209 (365)
T 4eqf_A 134 -KALMALAVSYTNTSHQQDACEALKNWIKQNP--KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD- 209 (365)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH--HHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-
T ss_pred -HHHHHHHHHHHccccHHHHHHHHHHHHHhCc--cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-
Confidence 9999999999999999999999999999987 4444443 4599999999999999999999999732
Q ss_pred hhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007775 422 TKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAF 501 (590)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 501 (590)
..++.++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+..|
T Consensus 210 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 210 -------------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0158899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC------------CHHHHHHHHHHHHHhCCCCchHH
Q 007775 502 RSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM------------NSSAWYNLGLFYKSQGTQSSKLE 569 (590)
Q Consensus 502 ~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~g~~~~~~~ 569 (590)
+++++.+|+++.++..+|.++...|+++ +|+..|++++++.|+ +..+|..++.++...|+ .+.
T Consensus 271 ~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~ 345 (365)
T 4eqf_A 271 TRALEIQPGFIRSRYNLGISCINLGAYR--EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ---PEL 345 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC---HHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc---HHH
Confidence 9999999999999999999999999999 999999999999887 36789999999999999 999
Q ss_pred HHHHHHHHhcc
Q 007775 570 AAECFEAAASL 580 (590)
Q Consensus 570 A~~~~~~al~l 580 (590)
|..+.++.+..
T Consensus 346 a~~~~~~~l~~ 356 (365)
T 4eqf_A 346 FQAANLGDLDV 356 (365)
T ss_dssp HHHHHTTCCGG
T ss_pred HHHHHHhhHHH
Confidence 99888876554
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=6.3e-30 Score=250.20 Aligned_cols=294 Identities=12% Similarity=0.060 Sum_probs=249.4
Q ss_pred HHHhCCChHHHHH-HHHHhhcCCCCCCC----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHH
Q 007775 204 CYYGAGEDLVALN-LLRTLLSGSEDPKC----LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (590)
Q Consensus 204 ~~~~~g~~~~A~~-~~~~~l~~~~~p~~----~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~ 278 (590)
++...|++++|+. .|++++ ...|.+ ...++..+..+ ...|++++|+..++++++..|.+. .++..+|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~ 105 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGY--QFEEENPLRDHPQPFEEGLRR-LQEGDLPNAVLLFEAAVQQDPKHM-----EAWQYLG 105 (368)
T ss_dssp ------------CHHHHCCC--CCCSSCTTTTCSSHHHHHHHH-HHTTCHHHHHHHHHHHHHSCTTCH-----HHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHH--hcCCCCcccchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHH
Confidence 4556788999998 898888 455544 34456666444 355678899999999999888776 5899999
Q ss_pred HHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHH--
Q 007775 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL-- 356 (590)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-- 356 (590)
.++...|+ +++|+..|++++ ..+|.++.++..+|.++...|++++|+..+++++...|.+. ..+.
T Consensus 106 ~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 172 (368)
T 1fch_A 106 TTQAENEQ-----------ELLAISALRRCL-ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPA 172 (368)
T ss_dssp HHHHHTTC-----------HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC--
T ss_pred HHHHHCcC-----------HHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Confidence 99999999 999999999999 99999999999999999999999999999999999999877 5554
Q ss_pred --------------HHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhh
Q 007775 357 --------------LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (590)
Q Consensus 357 --------------~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 422 (590)
.++.++ ..|++++|+..++++++..|...++.++..+|.++...|++++|+..|++++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---- 247 (368)
T 1fch_A 173 EEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---- 247 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 456666 9999999999999999999832278999999999999999999999999999997
Q ss_pred hcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007775 423 KTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFR 502 (590)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 502 (590)
|.++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|+
T Consensus 248 ------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 248 ------------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCC-----------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Q 007775 503 SALNIDPAH-----------VPSLISTAVVLRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 503 ~al~~~p~~-----------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
+++++.|++ ..+|..+|.++...|+++ +|..++.++++.
T Consensus 310 ~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~l~~ 359 (368)
T 1fch_A 310 EALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD--AYGAADARDLST 359 (368)
T ss_dssp HHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG--GHHHHHTTCHHH
T ss_pred HHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH--hHHHhHHHHHHH
Confidence 999998887 889999999999999999 999988776653
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=5.1e-28 Score=248.26 Aligned_cols=381 Identities=11% Similarity=0.024 Sum_probs=259.1
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHH
Q 007775 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (590)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~ 233 (590)
+...|.+..++..++. +...|+++.|...|++++...|.+...|..++..+...|++++|+.+|++++ ...| ++..
T Consensus 6 l~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral--~~~p-~~~l 81 (530)
T 2ooe_A 6 LEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL--MKVL-HIDL 81 (530)
T ss_dssp HHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TTCC-CHHH
T ss_pred hhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hcCC-ChHH
Confidence 4567999999999988 4789999999999999999999999999999999999999999999999999 5667 5666
Q ss_pred HHHHHHHHhcCCCCHHHHHH----HHHHHHHHcCCCCcchhhHHHHHHHHHHhh---------chhhccChHHHHHHHHH
Q 007775 234 LLIASKICGEYPDLAEEGAT----FASRALECLGDGCDQMESTANCLLGISLSA---------QSKVAITDFDRATRQAK 300 (590)
Q Consensus 234 ~~~~a~~~~~~~~~~~~A~~----~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~ 300 (590)
++..+.......+..++|.+ .|++++...+.+.. ....|...+..... .|+ +++
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~-----------~~~ 148 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM--SYQIWVDYINFLKGVEAVGSYAENQR-----------ITA 148 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT--CHHHHHHHHHHHHHSCCCSSTTHHHH-----------HHH
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc--cHHHHHHHHHHHhcCCCcccHHHHhH-----------HHH
Confidence 66666544444455555554 78888876443321 12455555544433 455 778
Q ss_pred HHHHHHHHHHhhCCCCh--HHHHHHHHHH-------------HHccCH--------------------------------
Q 007775 301 ALQALVSAARSTNMRDL--SILYRLSLEY-------------AEQRKL-------------------------------- 333 (590)
Q Consensus 301 A~~~~~~a~~~~~p~~~--~~~~~la~~~-------------~~~g~~-------------------------------- 333 (590)
|..+|++++ . .|.+. ..|....... ...+++
T Consensus 149 a~~~y~~al-~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 149 VRRVYQRGC-V-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHT-T-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHH-h-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 888888887 6 35432 1221111100 011122
Q ss_pred ----------------------------HHHHHHHHHHHcccCCCcHHHHHHHHHHHHH-------cCChH-------HH
Q 007775 334 ----------------------------NAAHYYAKMLLKLEGGSNLKGWLLMARILSA-------QKRYE-------DA 371 (590)
Q Consensus 334 ----------------------------~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~-------~g~~~-------~A 371 (590)
..++..|++++..+|.++ .+|..+|..+.. .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~-~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 245566777777777776 777777777665 56665 67
Q ss_pred HHHHHHHHh-ccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHH-HHHHH
Q 007775 372 ETILNAALD-QTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLEL-EVWLD 449 (590)
Q Consensus 372 ~~~~~~a~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 449 (590)
..+|+++++ ..| ++..+|..++.++...|++++|...|+++++.. |.++ .+|..
T Consensus 306 ~~~~~~Al~~~~p--~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~~ 361 (530)
T 2ooe_A 306 ANIYERAISTLLK--KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE----------------------DIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHHTTTTCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS----------------------SSCHHHHHHH
T ss_pred HHHHHHHHHHhCc--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc----------------------ccCchHHHHH
Confidence 777777775 555 566777777777777777777777777777664 2222 46777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCC
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVL-YEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQ 528 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 528 (590)
++.++.+.|++++|+.+|+++++..|.+...+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence 77777777777777777777777666665555555544 23467777777777777777777777777777777777776
Q ss_pred chHHHHHHHHHHHhhcCCCHH----HHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 529 SNAVIRSFLMAALRLDGMNSS----AWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 529 ~l~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
+ +|..+|++++...|.++. +|...+......|+ .+.+..+++++++..|+
T Consensus 442 ~--~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~---~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 442 N--NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFRE 495 (530)
T ss_dssp H--HHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHTHH
T ss_pred h--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCch
Confidence 6 777777777776554443 66666666666677 77777777777777664
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=2.7e-27 Score=240.32 Aligned_cols=357 Identities=15% Similarity=0.077 Sum_probs=315.6
Q ss_pred CCchhHHHHHHHHHHh----cCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHh----CCChHHHHHHHHHhhcCCCCCC
Q 007775 158 EWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPK 229 (590)
Q Consensus 158 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~p~ 229 (590)
+.++.....|+.+|.. .++++.|...|+++... .++.+++.+|.+|.. .+++++|+.+|+++.. +.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~ 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL----KG 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TT
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CC
Confidence 5688899999999998 89999999999999864 678999999999999 9999999999999984 24
Q ss_pred ChHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhh----chhhccChHHHHHHHHHHH
Q 007775 230 CLPALLIASKICGEY---PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSA----QSKVAITDFDRATRQAKAL 302 (590)
Q Consensus 230 ~~~~~~~~a~~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~A~ 302 (590)
++.+...++.++... .++.++|+.+|+++.+.. +. .+++.+|.+|.. .++ +++|+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~-----~a~~~Lg~~y~~g~g~~~d-----------~~~A~ 171 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RD-----SGQQSMGDAYFEGDGVTRD-----------YVMAR 171 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH-----HHHHHHHHHHHHTSSSCCC-----------HHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH-----HHHHHHHHHHHcCCCCCCC-----------HHHHH
Confidence 677888888666542 568889999999998752 33 689999999987 677 99999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH----cCChHHHHHH
Q 007775 303 QALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETI 374 (590)
Q Consensus 303 ~~~~~a~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~ 374 (590)
..|++++ .. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++ .++..+|.++.. .+++++|+.+
T Consensus 172 ~~~~~a~-~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~-~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAA-EQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDE-LGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHH-HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH-HHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHH-HC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCH-HHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998 64 678999999999998 89999999999999875 456 899999999997 8999999999
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHH
Q 007775 375 LNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDL 450 (590)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (590)
|+++.+.. ++.+++.+|.++.. .+++++|+..|+++.+.. ++.++..+
T Consensus 246 ~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~------------------------~~~a~~~L 297 (490)
T 2xm6_A 246 FSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG------------------------NSDGQYYL 297 (490)
T ss_dssp HHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT------------------------CHHHHHHH
T ss_pred HHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC------------------------CHHHHHHH
Confidence 99999864 46788899999999 899999999999997653 36789999
Q ss_pred HHHHHhc-----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 007775 451 AFIYINL-----SQWHDAEICLSKSEAISSYSASKCHATGVLYEKKG---LYKEAIKAFRSALNIDPAHVPSLISTAVVL 522 (590)
Q Consensus 451 a~~~~~~-----g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 522 (590)
|.+|... +++++|+.+|+++.+. .++.+++.+|.++...| ++++|+.+|+++.+. +++.+++.+|.+|
T Consensus 298 g~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 298 AHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNAL 373 (490)
T ss_dssp HHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 9999998 9999999999999886 46789999999999877 899999999999986 6789999999999
Q ss_pred HH----cCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----hCCCCchHHHHHHHHHHhccccC
Q 007775 523 RK----LSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS----QGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 523 ~~----~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
.. .++++ +|+.+|+++++. .++.+++.||.+|.. .++ +++|..+|+++++..|+
T Consensus 374 ~~g~g~~~~~~--~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 374 LQGKGVKKDEQ--QAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERD---YVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHTSSSCCCHH--HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHHHCC
T ss_pred HcCCCCCCCHH--HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHCCCC
Confidence 99 88888 999999999886 468999999999998 788 99999999999999843
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=2.1e-29 Score=242.04 Aligned_cols=272 Identities=15% Similarity=0.094 Sum_probs=253.3
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
..++.+|..+...|+ +++|+..|++++ ..+|.++.++..+|.++...|++++|+..++++++.+|++.
T Consensus 22 ~~~~~~a~~~~~~~~-----------~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 89 (327)
T 3cv0_A 22 ENPMEEGLSMLKLAN-----------LAEAALAFEAVC-QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 89 (327)
T ss_dssp SCHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcc-----------HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH
Confidence 478899999999999 999999999999 99999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHH--------------HH-HHHHhcCHhHHHHHHHHHHH
Q 007775 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK--------------AK-VQLVQGQLKGAVETYTHLLA 416 (590)
Q Consensus 352 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~~l~ 416 (590)
.++..+|.++...|++++|+..++++++..| .+...+..+ +. ++...|++++|+..++++++
T Consensus 90 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 90 -AVHAALAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988 555555555 55 68889999999999999999
Q ss_pred HHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 007775 417 ALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKE 496 (590)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 496 (590)
.. |.++.++..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++
T Consensus 167 ~~----------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 167 MN----------------------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp HS----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hC----------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 87 55688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC------------CHHHHHHHHHHHHHhCCC
Q 007775 497 AIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM------------NSSAWYNLGLFYKSQGTQ 564 (590)
Q Consensus 497 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~g~~ 564 (590)
|+..|+++++..|+++.++..+|.++...|+++ +|+..|++++...|+ ++.+|..+|.++...|+
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 301 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD--LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR- 301 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC-
Confidence 999999999999999999999999999999999 999999999999999 78999999999999999
Q ss_pred CchHHHHHHHHHHhccccCCC
Q 007775 565 SSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 565 ~~~~~A~~~~~~al~l~p~~~ 585 (590)
+++|...++++++..|++.
T Consensus 302 --~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 302 --PDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp --HHHHHHHTTCCSHHHHHHT
T ss_pred --HHHHHHHHHHHHHhcchhh
Confidence 9999999999998887654
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=1e-26 Score=236.00 Aligned_cols=338 Identities=13% Similarity=-0.002 Sum_probs=284.6
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHh----CCChHHHHHHHHHhhcCCCCCCCh
Q 007775 160 DPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCL 231 (590)
Q Consensus 160 ~~~~~~~l~~~~~~----~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~p~~~ 231 (590)
++..+..|+.+|.. .++++.|...|+++... .++..++.+|.+|.. .+++++|+..|+++.. ++++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~~ 147 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE----QGRD 147 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCCH
Confidence 45566677777777 78889999999888753 578889999999998 8899999999999884 2467
Q ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhh----chhhccChHHHHHHHHHHHHH
Q 007775 232 PALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSA----QSKVAITDFDRATRQAKALQA 304 (590)
Q Consensus 232 ~~~~~~a~~~~~---~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~A~~~ 304 (590)
.+...++.++.. ..++.++|+.+|+++++. .+. .++..+|.+|.. .++ +++|+..
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~-----~a~~~Lg~~y~~g~g~~~~-----------~~~A~~~ 209 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV-----WSCNQLGYMYSRGLGVERN-----------DAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH-----HHHHHHHHHHHHTSSSCCC-----------HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH-----HHHHHHHHHHhcCCCCCcC-----------HHHHHHH
Confidence 777778866554 256788999999999875 222 689999999987 777 8999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH----cCChHHHHHHHH
Q 007775 305 LVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILN 376 (590)
Q Consensus 305 ~~~a~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 376 (590)
|+++. .. .++.+++.+|.+|.. .+++++|+.+|+++++. .++ .++..+|.++.. .+++++|+.+|+
T Consensus 210 ~~~a~-~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~-~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSA-TS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNS-IAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHH-HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCH-HHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHH-HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH-HHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 99988 53 578899999999997 88999999999999876 345 889999999998 899999999999
Q ss_pred HHHhccCCCCchHHHHHHHHHHHHh-----cCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHH
Q 007775 377 AALDQTGKWEQGELLRTKAKVQLVQ-----GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLA 451 (590)
Q Consensus 377 ~a~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 451 (590)
++.+.. ++.+++.+|.+|... +++++|+..|+++++.. ++.++..+|
T Consensus 284 ~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~------------------------~~~a~~~lg 335 (490)
T 2xm6_A 284 KSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG------------------------DATAQANLG 335 (490)
T ss_dssp HHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT------------------------CHHHHHHHH
T ss_pred HHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC------------------------CHHHHHHHH
Confidence 998763 467888999999988 89999999999998753 267889999
Q ss_pred HHHHhcC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 452 FIYINLS---QWHDAEICLSKSEAISSYSASKCHATGVLYEK----KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 452 ~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
.+|...| ++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 9998876 889999999999886 578999999999999 89999999999999875 468899999999998
Q ss_pred ----cCCCchHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHh
Q 007775 525 ----LSDQSNAVIRSFLMAALRLDGM---NSSAWYNLGLFYKSQ 561 (590)
Q Consensus 525 ----~g~~~l~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~ 561 (590)
.++++ +|..+|+++++..|+ ++.++..+|.++...
T Consensus 412 g~g~~~d~~--~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 412 GLGVERDYV--QAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp TSSSCCCHH--HHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred CCCCCCCHH--HHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 88888 999999999999854 888888888877653
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=5.1e-29 Score=240.65 Aligned_cols=249 Identities=8% Similarity=0.066 Sum_probs=231.0
Q ss_pred HHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhccCCCC
Q 007775 308 AARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR-YEDAETILNAALDQTGKWE 386 (590)
Q Consensus 308 a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~ 386 (590)
++ ..+|.+..++..+|.++...|++++|+..++++++++|++. .+|..+|.++...|+ +++|+..|++++..+| +
T Consensus 89 ai-~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~-~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~ 164 (382)
T 2h6f_A 89 QI-IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY-TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--K 164 (382)
T ss_dssp EE-CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--T
T ss_pred hh-hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH-HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--C
Confidence 35 66788889999999999999999999999999999999999 999999999999997 9999999999999999 8
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
+..+|+.+|.++...|++++|+..|+++++++ |.+..+|..+|.++...|++++|+.+
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld----------------------P~~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD----------------------AKNYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------ccCHHHHHHHHHHHHHcCChHHHHHH
Confidence 89999999999999999999999999999998 66699999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHhccCCCChhhHHHHHHHHHHcC--CCchHHHHHHHH
Q 007775 467 LSKSEAISSYSASKCHATGVLYEK-KGLYKEA-----IKAFRSALNIDPAHVPSLISTAVVLRKLS--DQSNAVIRSFLM 538 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~l~~A~~~~~ 538 (590)
|+++++++|++..+|+.+|.++.. .|..++| +.+|++++.++|++..+|++++.++...| +++ +|+..+.
T Consensus 223 ~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~--~a~~~~~ 300 (382)
T 2h6f_A 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYP--NLLNQLL 300 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCH--HHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchH--HHHHHHH
Confidence 999999999999999999999999 6665788 59999999999999999999999999988 577 9999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhCCC-----C-chHHHHHHHHHH-hccccCCC
Q 007775 539 AALRLDGMNSSAWYNLGLFYKSQGTQ-----S-SKLEAAECFEAA-ASLEETAP 585 (590)
Q Consensus 539 ~a~~~~p~~~~~~~~l~~~~~~~g~~-----~-~~~~A~~~~~~a-l~l~p~~~ 585 (590)
++ +.+|+++.++..+|.+|..+|+. + .+++|+++|+++ ++++|..+
T Consensus 301 ~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~ 353 (382)
T 2h6f_A 301 DL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK 353 (382)
T ss_dssp HH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred Hh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhH
Confidence 98 99999999999999999998510 0 058999999999 99999753
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=7.7e-29 Score=242.13 Aligned_cols=262 Identities=15% Similarity=0.121 Sum_probs=224.1
Q ss_pred HHHHHHHHhhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007775 303 QALVSAARSTNMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (590)
Q Consensus 303 ~~~~~a~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 378 (590)
..+.+.. ...+.++ ..++.+|..+...|++++|+.+|+++++.+|++. .++..+|.++...|++++|+..|+++
T Consensus 48 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 48 SASEKGY-YFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDA-EAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp -----CC-CCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhh-hcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH-HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444 4444444 5599999999999999999999999999999998 99999999999999999999999999
Q ss_pred HhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcC
Q 007775 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLS 458 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 458 (590)
++..| .+..++..+|.++...|++++|+..|+++++..|.....+... ......+..+|.++...|
T Consensus 126 l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------------~~~~~~~~~l~~~~~~~g 191 (365)
T 4eqf_A 126 LELQP--NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK------------KGSPGLTRRMSKSPVDSS 191 (365)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------CCH
T ss_pred HhcCC--CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhh------------ccchHHHHHHHHHHhhhh
Confidence 99998 7899999999999999999999999999999987654332210 012445667799999999
Q ss_pred ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHH
Q 007775 459 QWHDAEICLSKSEAISSY--SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSF 536 (590)
Q Consensus 459 ~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~ 536 (590)
++++|+.+|++++...|. ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+++ +|+..
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~ 269 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSE--EAVEA 269 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHH
Confidence 999999999999999999 89999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 537 LMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 537 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
|+++++.+|+++.++..+|.++...|+ +++|+.+|++++++.|++.
T Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 270 YTRALEIQPGFIRSRYNLGISCINLGA---YREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcccC
Confidence 999999999999999999999999999 9999999999999999853
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=2.6e-28 Score=235.70 Aligned_cols=250 Identities=10% Similarity=0.079 Sum_probs=236.1
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHcccCCC
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK-LNAAHYYAKMLLKLEGGS 350 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~ 350 (590)
.++..+|.++...|+ +++|+..|++++ .++|.+..+|+.+|.++...|+ +++|+..|++++.++|++
T Consensus 98 ~a~~~lg~~~~~~g~-----------~~~Al~~~~~al-~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 98 DVYDYFRAVLQRDER-----------SERAFKLTRDAI-ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp HHHHHHHHHHHHTCC-----------CHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCC-----------hHHHHHHHHHHH-HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 589999999999999 999999999999 9999999999999999999997 999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc
Q 007775 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (590)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 430 (590)
. .+|..+|.++...|++++|+..|+++++.+| .+..+|+.+|.++...|++++|+..|+++++.+
T Consensus 166 ~-~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~------------ 230 (382)
T 2h6f_A 166 Y-QVWHHRRVLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------------ 230 (382)
T ss_dssp H-HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------------
T ss_pred H-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------------
Confidence 9 9999999999999999999999999999999 899999999999999999999999999999998
Q ss_pred ccccccccccchHHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 007775 431 FYKGSANHARSLELEVWLDLAFIYIN-LSQWHDA-----EICLSKSEAISSYSASKCHATGVLYEKKG--LYKEAIKAFR 502 (590)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~a~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~ 502 (590)
|.+..+|+.+|.++.. .|.+++| +.+|++++.++|++..+|+.+|.++...| ++++|++.++
T Consensus 231 ----------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 231 ----------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 6669999999999999 6665888 59999999999999999999999999988 6999999999
Q ss_pred HHhccCCCChhhHHHHHHHHHHcC--------C-CchHHHHHHHHHH-HhhcCCCHHHHHHHHHHHHHh
Q 007775 503 SALNIDPAHVPSLISTAVVLRKLS--------D-QSNAVIRSFLMAA-LRLDGMNSSAWYNLGLFYKSQ 561 (590)
Q Consensus 503 ~al~~~p~~~~~~~~l~~~~~~~g--------~-~~l~~A~~~~~~a-~~~~p~~~~~~~~l~~~~~~~ 561 (590)
++ +.+|+++.++..+|.++.++| + ++ +|+.+|+++ ++++|.....|..++..+...
T Consensus 301 ~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~--~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 301 DL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN--KALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH--HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred Hh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 98 999999999999999999985 2 35 999999999 999999999999999888754
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=5.4e-27 Score=218.88 Aligned_cols=243 Identities=13% Similarity=0.109 Sum_probs=220.0
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc-hHHHHHH
Q 007775 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-GELLRTK 394 (590)
Q Consensus 316 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~l 394 (590)
+++.++..|.++...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..++++++..+.+.. ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-YIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS-TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 456788999999999999999999999999999998 99999999999999999999999999994332222 4568999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS 474 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 474 (590)
|.++...|++++|+..|+++++.+ |.++.++..+|.++...|++++|+.+|+++++.+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD----------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS----------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC----------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 999999999999999999999997 5557899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCC---CchHHHHHHHHHHHhhc---CCC-
Q 007775 475 SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSD---QSNAVIRSFLMAALRLD---GMN- 547 (590)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~l~~A~~~~~~a~~~~---p~~- 547 (590)
|.++.++..+|......+++++|+..|+++++.+|+++.++..+|.++...|+ ++ +|+..|+++++.. |+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG--LAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSC--TTHHHHHHHHHHHGGGGGGG
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhH--HHHHHHHHHHHHHhcccccc
Confidence 99999999999555556699999999999999999999999999999999999 88 9999999999876 442
Q ss_pred ----HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 548 ----SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 548 ----~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
..++..+|.+|...|+ +++|+.+|+++++++|+++.
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRD---KVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCccHHH
Confidence 3688999999999999 99999999999999999874
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=4.4e-27 Score=225.85 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 007775 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (590)
Q Consensus 247 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~ 326 (590)
++++|+..++++++..|++. .++..+|.++...|+ +++|+..|++++ ..+|.++.++..+|.+
T Consensus 36 ~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~-----------~~~A~~~~~~a~-~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAPERE-----EAWRSLGLTQAENEK-----------DGLAIIALNHAR-MLDPKDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCC-----------HHHHHHHHHHHH-hcCcCCHHHHHHHHHH
Confidence 44444444444444455443 466666777777777 777777777777 7777777777777777
Q ss_pred HHHccCHHHHHHHHHHHHcccCCCcHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHhccCCCCchHHH
Q 007775 327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM--------------AR-ILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (590)
Q Consensus 327 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 391 (590)
+...|++++|+..++++++..|.+. ..+..+ +. ++...|++++|+..++++++..| .+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYE-QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP--NDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTT-TC--------------------CCTTSHHHHHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccH-HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC--CCHHHH
Confidence 7777777777777777777777765 555554 55 57777888888888888888877 677788
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007775 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSE 471 (590)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 471 (590)
..+|.++...|++++|+..++++++.. |.++.++..+|.++...|++++|+..+++++
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR----------------------PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC----------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888888888888776 4557778888888888888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------------ChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 007775 472 AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA------------HVPSLISTAVVLRKLSDQSNAVIRSFLMA 539 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~l~~A~~~~~~ 539 (590)
+..|.++.++..+|.++...|++++|+..|++++...|+ ++.++..+|.++...|+++ +|...+++
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~ 311 (327)
T 3cv0_A 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD--LVELTYAQ 311 (327)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH--HHHHHTTC
T ss_pred HcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH--HHHHHHHH
Confidence 888888888888888888888888888888888888887 6778888888888888887 88888777
Q ss_pred HHhhcC
Q 007775 540 ALRLDG 545 (590)
Q Consensus 540 a~~~~p 545 (590)
+++..|
T Consensus 312 ~l~~~~ 317 (327)
T 3cv0_A 312 NVEPFA 317 (327)
T ss_dssp CSHHHH
T ss_pred HHHhcc
Confidence 666544
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=1.2e-25 Score=230.47 Aligned_cols=351 Identities=11% Similarity=0.007 Sum_probs=279.3
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 007775 184 IEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG 263 (590)
Q Consensus 184 ~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~ 263 (590)
|++++...|.+...|..++.. ...|++++|..+|++++ ...|.+...+...+..+.. .|..++|...|++++...|
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al--~~~P~~~~~w~~~~~~~~~-~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLV--AQFPSSGRFWKLYIEAEIK-AKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCC
Confidence 577778899999999999984 88999999999999999 7899999999988877654 4688899999999999988
Q ss_pred CCCcchhhHHHHHHHH-HHhhchhhccChHHHHHHHHH----HHHHHHHHHHhh---CCCChHHHHHHHHHHHH------
Q 007775 264 DGCDQMESTANCLLGI-SLSAQSKVAITDFDRATRQAK----ALQALVSAARST---NMRDLSILYRLSLEYAE------ 329 (590)
Q Consensus 264 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~----A~~~~~~a~~~~---~p~~~~~~~~la~~~~~------ 329 (590)
+. ..|...+. .....|+ +++ +...|++++ .. +|.+..+|...+.....
T Consensus 78 -~~-----~lw~~~~~~~~~~~~~-----------~~~a~~~~~~~~~~al-~~~g~~~~~~~~w~~~~~~~~~~~~~~~ 139 (530)
T 2ooe_A 78 -HI-----DLWKCYLSYVRETKGK-----------LPSYKEKMAQAYDFAL-DKIGMEIMSYQIWVDYINFLKGVEAVGS 139 (530)
T ss_dssp -CH-----HHHHHHHHHHHHHTTT-----------STTHHHHHHHHHHHHH-HHTTTSTTCHHHHHHHHHHHHHSCCCSS
T ss_pred -Ch-----HHHHHHHHHHHHHccc-----------hhhHHHHHHHHHHHHH-HHCCCCcccHHHHHHHHHHHhcCCCccc
Confidence 33 35665553 3333444 333 344788877 43 56777888888877665
Q ss_pred ---ccCHHHHHHHHHHHHcccCCCcH-HHHHHHHHHH-------------HHcCCh------------------------
Q 007775 330 ---QRKLNAAHYYAKMLLKLEGGSNL-KGWLLMARIL-------------SAQKRY------------------------ 368 (590)
Q Consensus 330 ---~g~~~~A~~~~~~~l~~~p~~~~-~~~~~la~~~-------------~~~g~~------------------------ 368 (590)
.|++++|..+|+++++ .|.... ..|....... ...+++
T Consensus 140 ~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 140 YAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 7999999999999998 465431 2222111110 001112
Q ss_pred ------------------------------------HHHHHHHHHHHhccCCCCchHHHHHHHHHHHH-------hcCHh
Q 007775 369 ------------------------------------EDAETILNAALDQTGKWEQGELLRTKAKVQLV-------QGQLK 405 (590)
Q Consensus 369 ------------------------------------~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~-------~g~~~ 405 (590)
.+++..|++++...| .++.+|..+|..+.. .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p--~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhchhhhhccchh
Confidence 245566777777776 667777777777765 57765
Q ss_pred -------HHHHHHHHHHH-HHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 406 -------GAVETYTHLLA-ALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 406 -------~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
+|+..|+++++ .. |.+..+|..++.++...|++++|...|+++++..|.+
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~----------------------p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 354 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLL----------------------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID 354 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC----------------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC
T ss_pred hhhhhhHHHHHHHHHHHHHhC----------------------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC
Confidence 77777777775 44 6679999999999999999999999999999999998
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH-HHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 007775 478 A-SKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV-LRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLG 555 (590)
Q Consensus 478 ~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~ 555 (590)
+ .+|..++.++.+.|++++|...|+++++..|.....+...+.+ +...|+++ +|..+|+++++..|+++.+|..++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~--~A~~~~e~al~~~p~~~~~~~~~~ 432 (530)
T 2ooe_A 355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS--VAFKIFELGLKKYGDIPEYVLAYI 432 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHH--HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChh--HHHHHHHHHHHHCCCCHHHHHHHH
Confidence 6 6999999999999999999999999999998887777776666 34689988 999999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 556 LFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 556 ~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
.++...|+ .++|..+|++++...|.+|.
T Consensus 433 ~~~~~~g~---~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 433 DYLSHLNE---DNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHTTTTC---HHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHhCCC---HhhHHHHHHHHHhccCCCHH
Confidence 99999999 99999999999998877653
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=9.1e-27 Score=208.53 Aligned_cols=196 Identities=20% Similarity=0.161 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY 432 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 432 (590)
.++..+|.++...|++++|+..|+++++.+| +++.++..+|.++...|++++|+..|+++++.+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 69 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVART-------------- 69 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 4555555555555555555555555555554 445555555555555555555555555555554
Q ss_pred ccccccccchHHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007775 433 KGSANHARSLELEVWLDLAFIYINL-----------SQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAF 501 (590)
Q Consensus 433 ~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 501 (590)
|.++.++..+|.++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|
T Consensus 70 --------P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 70 --------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33345555555555555 99999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 007775 502 RSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAA 578 (590)
Q Consensus 502 ~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al 578 (590)
+++++++ +++.++..+|.++...|+++ +|+..|+++++.+|+++.++..+|.++...|+ +++|+..|+++-
T Consensus 142 ~~al~~~-~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~ 212 (217)
T 2pl2_A 142 KQALALE-DTPEIRSALAELYLSMGRLD--EALAQYAKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALEH 212 (217)
T ss_dssp HHHHHHC-CCHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------------
T ss_pred HHHHhcc-cchHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHh
Confidence 9999999 99999999999999999999 99999999999999999999999999999999 999999998864
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=1.3e-26 Score=207.48 Aligned_cols=200 Identities=16% Similarity=0.066 Sum_probs=179.1
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHH
Q 007775 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (590)
Q Consensus 314 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 393 (590)
|.++.+++.+|.++...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..++++++..| +++.++..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP-EALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHH
Confidence 78889999999999999999999999999999999999 9999999999999999999999999999999 88999999
Q ss_pred HHHHHHHh-----------cCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHH
Q 007775 394 KAKVQLVQ-----------GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHD 462 (590)
Q Consensus 394 la~~~~~~-----------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 462 (590)
+|.++... |++++|+..|+++++.+ |.++.+|..+|.++...|++++
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN----------------------PRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC----------------------cccHHHHHHHHHHHHHcCChHH
Confidence 99999999 99999999999999998 6668999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007775 463 AEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAAL 541 (590)
Q Consensus 463 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~ 541 (590)
|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +|+..|+++-
T Consensus 137 A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~ 212 (217)
T 2pl2_A 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE--EAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH--HHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999999999999999999999 9999998764
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.9e-26 Score=210.46 Aligned_cols=239 Identities=13% Similarity=0.023 Sum_probs=194.1
Q ss_pred hHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCC
Q 007775 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (590)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 350 (590)
+..+..+|.++...|+ +++|+..|++++ ..+ .++.++..+|.++...|++++|+..++++++..|.+
T Consensus 5 a~~~~~~g~~~~~~~~-----------~~~A~~~~~~a~-~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 71 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQ-----------FDEAIEHYNKAW-ELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM 71 (258)
T ss_dssp HHHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc-----------HHHHHHHHHHHH-Hhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 3577888888888888 888888888888 777 778888888888888888888888888888877765
Q ss_pred -------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhh
Q 007775 351 -------NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (590)
Q Consensus 351 -------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 423 (590)
. .++..+|.++...|++++|+..+++++...| . +.++...|++++|+..+++++..+
T Consensus 72 ~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~--------~~~~~~~~~~~~a~~~~~~~~~~~----- 135 (258)
T 3uq3_A 72 RADYKVIS-KSFARIGNAYHKLGDLKKTIEYYQKSLTEHR--T--------ADILTKLRNAEKELKKAEAEAYVN----- 135 (258)
T ss_dssp TCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C--------HHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred ccchHHHH-HHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--h--------hHHHHHHhHHHHHHHHHHHHHHcC-----
Confidence 4 7788888888888888888888888888776 2 345667777888888888887775
Q ss_pred cccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 424 TFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
|..+.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+..|++
T Consensus 136 -----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 136 -----------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp -----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555778888888888888888888888888888888888888888888888888888888888
Q ss_pred HhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc------CCCHHHHHHHHHH
Q 007775 504 ALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD------GMNSSAWYNLGLF 557 (590)
Q Consensus 504 al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~------p~~~~~~~~l~~~ 557 (590)
+++.+|+++.++..+|.++...|+++ +|...|+++++.+ |++..++..++.+
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYA--SALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 88888888888888888888888887 8888888888887 7777777766654
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-26 Score=211.38 Aligned_cols=227 Identities=18% Similarity=0.096 Sum_probs=215.2
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc-------h
Q 007775 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-------G 388 (590)
Q Consensus 316 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~ 388 (590)
....+..+|.++...|++++|+.+|+++++.+ .+. .++..+|.++...|++++|+..++++++..| .. +
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI-TYLNNRAAAEYEKGEYETAISTLNDAVEQGR--EMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH-HHHHHHHHHHHHcccHHHHHHHHHHHHHhCc--ccccchHHHH
Confidence 45789999999999999999999999999999 777 9999999999999999999999999999887 33 6
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007775 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLS 468 (590)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 468 (590)
.++..+|.++...|++++|+..|++++...| . +.++...|++++|+..++
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------------------~--------~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHR----------------------T--------ADILTKLRNAEKELKKAE 129 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----------------------C--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCc----------------------h--------hHHHHHHhHHHHHHHHHH
Confidence 8999999999999999999999999999863 2 356777888999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 469 KSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 469 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
+++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +|+..|+++++.+|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~~~~~ 207 (258)
T 3uq3_A 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP--EAIADCNKAIEKDPNFV 207 (258)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCH
T ss_pred HHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 549 SAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
.+|..+|.++...|+ +++|+..|+++++++
T Consensus 208 ~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 208 RAYIRKATAQIAVKE---YASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---HHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=4.7e-26 Score=213.13 Aligned_cols=252 Identities=15% Similarity=0.087 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 376 (590)
+.+|+..+++.. ...|.+ .+....++.+|...|++++|+..++.. +|... .++..++..+...+++++|++.++
T Consensus 15 y~~ai~~~~~~~-~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~-~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 15 YQQCINEAQRVK-PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL-QAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp HHHHHHHHHHSC-CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHH-HHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHhcc-cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhH-HHHHHHHHHHcCCCcHHHHHHHHH
Confidence 899999998877 666665 357788999999999999999877652 45455 788999999999999999999999
Q ss_pred HHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh
Q 007775 377 AALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN 456 (590)
Q Consensus 377 ~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 456 (590)
+++.....|+++.+++.+|.++...|++++|+..+++ |.+..++..+|.++..
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------------------------~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------------------------GDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------------------------CCSHHHHHHHHHHHHH
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------------------------CCCHHHHHHHHHHHHH
Confidence 9987642238899999999999999999999999985 2347899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHH
Q 007775 457 LSQWHDAEICLSKSEAISSYSASKCHATG--VLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 457 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
.|++++|+..|+++++.+|++.......+ .++...|++++|+..|+++++..|+++.+++++|.++...|+++ +|+
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--eA~ 220 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE--AAE 220 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH--HHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--HHH
Confidence 99999999999999999999865444333 34445689999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHH-HHHHHHHHhccccCCCC
Q 007775 535 SFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLE-AAECFEAAASLEETAPV 586 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~-A~~~~~~al~l~p~~~~ 586 (590)
..|+++++.+|+++.++.++|.++...|+ +++ +.++++++++++|++|.
T Consensus 221 ~~l~~al~~~p~~~~~l~~l~~~~~~~g~---~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 221 GVLQEALDKDSGHPETLINLVVLSQHLGK---PPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999999999999 876 57899999999999874
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=2.6e-26 Score=214.26 Aligned_cols=253 Identities=13% Similarity=0.065 Sum_probs=224.0
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
..++..|.++...|+ +++|+..|++++ ..+|.++.++..+|.++...|++++|+..++++++ .|.++
T Consensus 4 ~~~~~~a~~~~~~~~-----------~~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~ 70 (272)
T 3u4t_A 4 DVEFRYADFLFKNNN-----------YAEAIEVFNKLE-AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT 70 (272)
T ss_dssp -CHHHHHHHHHTTTC-----------HHHHHHHHHHHH-HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT
T ss_pred HHHHHHHHHHHHhcC-----------HHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch
Confidence 477889999999999 999999999999 99999999999999999999999999999999999 44332
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccc
Q 007775 352 ---LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSD 428 (590)
Q Consensus 352 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 428 (590)
..++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+..|+++++.+
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------- 138 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---------- 138 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS----------
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC----------
Confidence 14589999999999999999999999999998 788999999999999999999999999998876
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHh
Q 007775 429 KRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGL---YKEAIKAFRSAL 505 (590)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al 505 (590)
|.++.++..+|......+++++|+..|+++++..|+++.++..+|.++...|+ +++|+..|++++
T Consensus 139 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 139 ------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 66789999999444555699999999999999999999999999999999999 999999999999
Q ss_pred ccC---CCC-----hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 506 NID---PAH-----VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 506 ~~~---p~~-----~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
+.. |+. ..++..+|.++...|+++ +|+.+|+++++++|+++.++..++.+....+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKV--KADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 875 442 368899999999999999 99999999999999999999999887765543
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.6e-25 Score=209.50 Aligned_cols=273 Identities=13% Similarity=0.055 Sum_probs=204.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH
Q 007775 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (590)
Q Consensus 245 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la 324 (590)
.|.+++|+..++++....|++. ..+...++.+|...|+ +++|+..++. .+|.+..++..++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~----~e~~~~l~r~yi~~g~-----------~~~al~~~~~----~~~~~~~a~~~la 72 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERD----VERDVFLYRAYLAQRK-----------YGVVLDEIKP----SSAPELQAVRMFA 72 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHH----HHHHHHHHHHHHHTTC-----------HHHHHHHSCT----TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhh----HHHHHHHHHHHHHCCC-----------HHHHHHHhcc----cCChhHHHHHHHH
Confidence 3456666666665544444321 1355666777888888 7777765543 2355566777788
Q ss_pred HHHHHccCHHHHHHHHHHHHcc--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc
Q 007775 325 LEYAEQRKLNAAHYYAKMLLKL--EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (590)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g 402 (590)
..+...|+.++|++.+++++.. +|+++ .++..+|.++...|++++|+..+++ | .+..++..+|.++..+|
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~-~~~~~la~~~~~~g~~~~Al~~l~~-----~--~~~~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNT-TFLLMAASIYFYDQNPDAALRTLHQ-----G--DSLECMAMTVQILLKLD 144 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCH-HHHHHHHHHHHHTTCHHHHHHHHTT-----C--CSHHHHHHHHHHHHHTT
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHCCCHHHHHHHHhC-----C--CCHHHHHHHHHHHHHCC
Confidence 8888888888888888887754 58777 7888888888888888888888877 4 67778888888888888
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHH--HHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLD--LAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
++++|+..|+++++.+| .+...... +..++...|++++|+.+|+++++..|+++.+
T Consensus 145 ~~~~A~~~l~~~~~~~p----------------------~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~ 202 (291)
T 3mkr_A 145 RLDLARKELKKMQDQDE----------------------DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202 (291)
T ss_dssp CHHHHHHHHHHHHHHCT----------------------TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHH
T ss_pred CHHHHHHHHHHHHhhCc----------------------CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888888888763 22222222 2233445688999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS 560 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 560 (590)
++.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+.. +.+..+++++++.+|+++.+.. ...+
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~-eaa~~~~~~~~~~~P~~~~~~d----~~~~ 277 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP-EVTNRYLSQLKDAHRSHPFIKE----YRAK 277 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHCTTCHHHHH----HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCCChHHHH----HHHH
Confidence 9999999999999999999999999999999999999999999999986 2357888999999999887653 4555
Q ss_pred hCCCCchHHHHHHH
Q 007775 561 QGTQSSKLEAAECF 574 (590)
Q Consensus 561 ~g~~~~~~~A~~~~ 574 (590)
.+. ++++..-|
T Consensus 278 ~~~---fd~~~~~~ 288 (291)
T 3mkr_A 278 END---FDRLVLQY 288 (291)
T ss_dssp HHH---HHHHHHHH
T ss_pred HHH---HHHHHHHc
Confidence 566 66666555
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.3e-25 Score=223.04 Aligned_cols=279 Identities=19% Similarity=0.153 Sum_probs=244.9
Q ss_pred hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 007775 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (590)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~ 345 (590)
....+..+|..+...|+ +++|+..|++++ ...|.++ .++..+|.++...|++++|+.+++++++
T Consensus 47 ~~~~l~~~g~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 47 MCLELALEGERLCNAGD-----------CRAGVAFFQAAI-QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHH-HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34577889999999999 999999999999 9999987 5789999999999999999999999998
Q ss_pred c------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC----CCCchHHHHHHHHHHHHhcC------------
Q 007775 346 L------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG----KWEQGELLRTKAKVQLVQGQ------------ 403 (590)
Q Consensus 346 ~------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~~~la~~~~~~g~------------ 403 (590)
. .|... .++..+|.++...|++++|+.+++++++..+ .+....++..+|.++...|+
T Consensus 115 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 115 LAKSMNDRLGEA-KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp HHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHccCchHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 7 45566 8999999999999999999999999998832 11557789999999999999
Q ss_pred -----HhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCH
Q 007775 404 -----LKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSA 478 (590)
Q Consensus 404 -----~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 478 (590)
+++|+..++++++..+.. ...+....++..+|.++...|++++|+.++++++.+.+...
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDL----------------GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 999999999999876432 22255577999999999999999999999999999876543
Q ss_pred H------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC
Q 007775 479 S------KCHATGVLYEKKGLYKEAIKAFRSALNIDPAH------VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 479 ~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~ 546 (590)
. ++..+|.++...|++++|+.+|++++...|.. ..++..+|.++...|+++ +|+.++++++...+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN--TAIEYHNRHLAIAQE 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Confidence 3 89999999999999999999999999877644 678899999999999999 999999999987543
Q ss_pred C------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 547 N------SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 547 ~------~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
. ..++..+|.++...|+ +++|..+|++++++.+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGG---HERALKYAEQHLQLAX 374 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHh
Confidence 2 4588999999999999 9999999999998754
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.6e-25 Score=220.40 Aligned_cols=279 Identities=18% Similarity=0.178 Sum_probs=244.8
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKL- 346 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 346 (590)
.++..+|.++...|+ +++|+..|++++ ...|.++ .++..+|.++...|++++|+.++++++..
T Consensus 10 ~~l~~~g~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 10 LELALEGERLCKSGD-----------CRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp HHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-----------HHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 578899999999999 999999999999 9999885 67889999999999999999999999876
Q ss_pred -----cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC----chHHHHHHHHHHHHhcC--------------
Q 007775 347 -----EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQ-------------- 403 (590)
Q Consensus 347 -----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~la~~~~~~g~-------------- 403 (590)
.|... .++..+|.++...|++++|+..++++++..+... ...++..+|.++...|+
T Consensus 78 ~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 78 RTIGDQLGEA-KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HhccccHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 33344 7899999999999999999999999998865222 25588999999999999
Q ss_pred ------HhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 404 ------LKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 404 ------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
+++|+..+++++...+.. ...+....++..+|.++...|++++|+.++++++.+.|..
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTAL----------------GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc----------------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 999999999999886421 2235567899999999999999999999999999887655
Q ss_pred HH------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 478 AS------KCHATGVLYEKKGLYKEAIKAFRSALNIDPAH------VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 478 ~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
.. ++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|+++ +|+.+++++++..+
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE--KAIDYHLKHLAIAQ 298 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHH
Confidence 43 89999999999999999999999999877655 678899999999999999 99999999998755
Q ss_pred CC------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 546 MN------SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 546 ~~------~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
.. ..++..+|.++...|+ +++|+.+|++++++.+..
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHT
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHh
Confidence 43 6788999999999999 999999999999886543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=3.5e-25 Score=221.04 Aligned_cols=376 Identities=13% Similarity=-0.009 Sum_probs=206.2
Q ss_pred ccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCH---HHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC
Q 007775 133 VPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDL---SSLATQIEELLPGIINRKERYHILALCYYGAG 209 (590)
Q Consensus 133 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g 209 (590)
...+++++|+..+..... +.++..+..|+.+|...|+. ++|...|++++.. ++..++.+|.++...|
T Consensus 14 ~~~g~~~~A~~~~~~aa~-------~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAE-------LGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HTCCTGGGTCC-------------------------------CHHHHHHHHHTC-
T ss_pred HhCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCC
Confidence 345556666655533211 13455556666666666666 6677777766643 5566667777555554
Q ss_pred -----ChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHh
Q 007775 210 -----EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL--AEEGATFASRALECLGDGCDQMESTANCLLGISLS 282 (590)
Q Consensus 210 -----~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 282 (590)
++++|+..|++++. . +++.+.+.++.++....+. ..++...+.++.... .+ .+++.+|.+|.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~--~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~-----~a~~~Lg~~y~ 152 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFA--N--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YP-----EAGLAQVLLYR 152 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHH--T--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CT-----THHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CH-----HHHHHHHHHHH
Confidence 56677777777763 2 2223444455444333221 123344444433321 12 36667777766
Q ss_pred hchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcc---CHHHHHHHHHHHHcccCCCcHHHHHHHH
Q 007775 283 AQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMA 359 (590)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~la 359 (590)
..+.. ....+++..+++.+. ..++.+++.+|.+|...| ++++|+.+|+++.+..|... ..++.+|
T Consensus 153 ~~~~~-------~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a-~~~~~Lg 220 (452)
T 3e4b_A 153 TQGTY-------DQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA-QRVDSVA 220 (452)
T ss_dssp HHTCG-------GGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-HHHHHHH
T ss_pred cCCCc-------ccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-HHHHHHH
Confidence 66640 000344444444444 334447777777777777 77777777777777776665 5566777
Q ss_pred HHHHHc----CChHHHHHHHHHHHhccCCCCchHHHHHHHHH-H--HHhcCHhHHHHHHHHHHHHHhhhhhccccccccc
Q 007775 360 RILSAQ----KRYEDAETILNAALDQTGKWEQGELLRTKAKV-Q--LVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY 432 (590)
Q Consensus 360 ~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 432 (590)
.+|... +++++|+.+|+++. | .++.+++.+|.+ + ...+++++|+..|+++.+.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa---~--g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------------- 280 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA---P--GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------------- 280 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG---G--GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---------------
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc---C--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---------------
Confidence 777554 57777777777766 3 566677777776 3 3567777777777776643
Q ss_pred ccccccccchHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 007775 433 KGSANHARSLELEVWLDLAFIYINLS-----QWHDAEICLSKSEAISSYSASKCHATGVLYEK----KGLYKEAIKAFRS 503 (590)
Q Consensus 433 ~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 503 (590)
.++.+++.+|.+|. .| ++++|+.+|+++. +.++.+++.+|.+|.. ..++++|+.+|++
T Consensus 281 ---------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 281 ---------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp ---------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 23667777777776 44 7777777777776 6677777777777665 3377777777777
Q ss_pred HhccCCCChhhHHHHHHHHHH----cCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHH
Q 007775 504 ALNIDPAHVPSLISTAVVLRK----LSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQ--GTQSSKLEAAECFEAA 577 (590)
Q Consensus 504 al~~~p~~~~~~~~l~~~~~~----~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--g~~~~~~~A~~~~~~a 577 (590)
+.+ +.++.+.+++|.+|.. ..++. +|..+|+++.+.. ++.+...++.+.... ++ ..+|....++.
T Consensus 348 Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~--~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~~~~---~~~a~~~~~~~ 418 (452)
T 3e4b_A 348 AAR--NGQNSADFAIAQLFSQGKGTKPDPL--NAYVFSQLAKAQD--TPEANDLATQLEAPLTPAQ---RAEGQRLVQQE 418 (452)
T ss_dssp HHT--TTCTTHHHHHHHHHHSCTTBCCCHH--HHHHHHHHHHTTC--CHHHHHHHHHHHTTCCHHH---HHHHHHHHHHH
T ss_pred HHh--hChHHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHHHCC--CHHHHHHHHHHHHhCCHHH---HHHHHHHHHHH
Confidence 765 3456677777777764 23444 7777777776644 345555555554332 23 56666666666
Q ss_pred hccccC
Q 007775 578 ASLEET 583 (590)
Q Consensus 578 l~l~p~ 583 (590)
.+..++
T Consensus 419 ~~~~~~ 424 (452)
T 3e4b_A 419 LAARGT 424 (452)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 554443
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=219.63 Aligned_cols=287 Identities=16% Similarity=0.138 Sum_probs=211.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh------CCCChHH
Q 007775 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST------NMRDLSI 319 (590)
Q Consensus 246 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~p~~~~~ 319 (590)
|++++|+.+++++++..|.+. .....++..+|.++...|+ +++|+..+++++ .. .|....+
T Consensus 23 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDL-KTLSAIYSQLGNAYFYLHD-----------YAKALEYHHHDL-TLARTIGDQLGEAKA 89 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHH-HHHHhccccHHHHHH
Confidence 344444444444444444332 1223467777777777777 778888877776 54 2333567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCc-----HHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKR--------------------YEDAETI 374 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~--------------------~~~A~~~ 374 (590)
+..+|.++...|++++|+.+++++++..|... ..++..+|.++...|+ +++|+..
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77888888888888888888888887655421 1478888888888888 8888888
Q ss_pred HHHHHhccCC----CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHH
Q 007775 375 LNAALDQTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDL 450 (590)
Q Consensus 375 ~~~a~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (590)
+++++...+. +....++..+|.++...|++++|+..++++++..+.. ...+....++..+
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~l 233 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----------------GDKAAERRAYSNL 233 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc----------------CCcHHHHHHHHHH
Confidence 8888776321 1335678888999999999999999999998887542 1113345688889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------hhhHHHH
Q 007775 451 AFIYINLSQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH------VPSLIST 518 (590)
Q Consensus 451 a~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 518 (590)
|.++...|++++|+.++++++.+.|.. ..++..+|.++...|++++|+.+|++++.+.+.. ..++..+
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 313 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999999999999988876655 6678888999999999999999999888765433 5678889
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcC------CCHHHHHHHHHHHHHhCC
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDG------MNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~g~ 563 (590)
|.++...|+++ +|+.++++++++.+ ....++..+|.++...|+
T Consensus 314 a~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 314 GNAYTALGNHD--QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHTCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHH--HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 99999999988 99999999888633 335678888999988887
No 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=6.4e-25 Score=211.49 Aligned_cols=279 Identities=18% Similarity=0.176 Sum_probs=239.7
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKL- 346 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 346 (590)
..+...|..+...|+ +++|+..|++++ ...|.++ .++..+|.++...|++++|+.++++++..
T Consensus 6 ~~l~~~g~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 6 LELALEGERLCKSGD-----------CRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-----------HHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 467888999999999 999999999999 9999984 67889999999999999999999999876
Q ss_pred -----cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc----hHHHHHHHHHHHHhcC--------------
Q 007775 347 -----EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----GELLRTKAKVQLVQGQ-------------- 403 (590)
Q Consensus 347 -----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~la~~~~~~g~-------------- 403 (590)
.|... .++..+|.++...|++++|+..++++++..+...+ ..++..+|.++...|+
T Consensus 74 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3ro2_A 74 RTIGDQLGEA-KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFP 152 (338)
T ss_dssp HHHTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CC
T ss_pred hcccccHHHH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhh
Confidence 33444 78999999999999999999999999988652222 4588899999999999
Q ss_pred ------HhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 404 ------LKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 404 ------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
+++|+..+++++...+.. ...+....++..+|.++...|++++|+.++++++...+..
T Consensus 153 ~~a~~~~~~A~~~~~~a~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 153 EDVRNALQAAVDLYEENLSLVTAL----------------GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999999999998875422 2225557799999999999999999999999999876543
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 478 ------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH------VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 478 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
..++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+++ +|+.+++++++..+
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE--KAIDYHLKHLAIAQ 294 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHH
Confidence 3379999999999999999999999999876654 678899999999999999 99999999998755
Q ss_pred CC------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 546 MN------SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 546 ~~------~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
.. ..++..+|.++...|+ +++|..+|++++++.++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHC----
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhh
Confidence 32 4588899999999999 999999999999998764
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=1.8e-24 Score=215.87 Aligned_cols=172 Identities=16% Similarity=0.084 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHcccCCCcHHHHHHHHHH-H--HHcCChHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQ----RKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-L--SAQKRYED 370 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~-~--~~~g~~~~ 370 (590)
+++|+..|+++. ...|.+...++.+|.+|... +++++|+.+|+++. |+++ .+++.+|.+ + ...+++++
T Consensus 195 ~~~A~~~~~~aa-~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~-~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 195 QAELLKQMEAGV-SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP-ASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHH-HTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST-HHHHHHHHHHHHSGGGCCHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH-HHHHHHHHHHHhCCCCCCHHH
Confidence 455555555555 44444444445555555333 35555555555544 4444 555555554 2 23445555
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHHHHhc-----CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHH
Q 007775 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQG-----QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELE 445 (590)
Q Consensus 371 A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (590)
|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. + .++.
T Consensus 270 A~~~~~~Aa~~----g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~----------------------g~~~ 319 (452)
T 3e4b_A 270 MMKYLDNGRAA----DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G----------------------REVA 319 (452)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T----------------------TCHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C----------------------CCHH
Confidence 55555555433 23444555555554 33 5555555555444 1 1144
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhc
Q 007775 446 VWLDLAFIYIN----LSQWHDAEICLSKSEAISSYSASKCHATGVLYEK----KGLYKEAIKAFRSALN 506 (590)
Q Consensus 446 ~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~ 506 (590)
+++.+|.+|.. ..++++|+.+|+++.+ +.++.+.+.+|.+|.. ..++++|..+|+++.+
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 55555554444 2255555555555443 2334445555555442 2345555555555544
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=2.2e-24 Score=197.40 Aligned_cols=221 Identities=15% Similarity=0.118 Sum_probs=185.0
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHH
Q 007775 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (590)
Q Consensus 316 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la 395 (590)
.+..++.+|..+...|++++|+.+|+++++.+|.+. .++..+|.++...|++++|+..++++++..| .+..++..+|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA-IPYINFANLLSSVNELERALAFYDKALELDS--SAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cchHHHHHHH
Confidence 346788999999999999999999999999999998 9999999999999999999999999999988 7889999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007775 396 KVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS 475 (590)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 475 (590)
.++...|++++|+..++++++.. |.+..++..+|.++...|++++|+..+++++...|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG----------------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT----------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhccHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987 55578899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 007775 476 YSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLG 555 (590)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~ 555 (590)
.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++ +|+.+++++++.+|+++.++..++
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE--KALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT--HHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH--HHHHHHHHHHccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999888
Q ss_pred HHHHHhCC
Q 007775 556 LFYKSQGT 563 (590)
Q Consensus 556 ~~~~~~g~ 563 (590)
.+....|.
T Consensus 235 ~l~~~~~~ 242 (243)
T 2q7f_A 235 LLGHHHHH 242 (243)
T ss_dssp C-------
T ss_pred HHHhhccC
Confidence 77665543
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=4.3e-23 Score=192.34 Aligned_cols=231 Identities=16% Similarity=0.193 Sum_probs=212.1
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhccCCCCch
Q 007775 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTGKWEQG 388 (590)
Q Consensus 313 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~ 388 (590)
+|.++.+++.+|.++...|++++|+.+|+++++ |++. .++..+|.++.. .+++++|+.+|+++++.. ++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~-~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~ 74 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN-SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YS 74 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH-HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CH
Confidence 478899999999999999999999999999998 7777 999999999999 999999999999999874 57
Q ss_pred HHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh----cCCh
Q 007775 389 ELLRTKAKVQLV----QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN----LSQW 460 (590)
Q Consensus 389 ~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~ 460 (590)
.++..+|.++.. .+++++|+..|+++++.. ++.++..+|.+|.. .+++
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------------------------YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHCSSSCCCH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------------CccHHHHHHHHHHcCCCcccCH
Confidence 899999999999 999999999999998763 37899999999999 9999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH----cCCCchHH
Q 007775 461 HDAEICLSKSEAISSYSASKCHATGVLYEK----KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK----LSDQSNAV 532 (590)
Q Consensus 461 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~l~~ 532 (590)
++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++. +++.++..+|.++.. .++++ +
T Consensus 131 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~--~ 204 (273)
T 1ouv_A 131 KKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFK--E 204 (273)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHH--H
T ss_pred HHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHH--H
Confidence 99999999999876 68899999999999 99999999999999987 457899999999999 99998 9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHH----hCCCCchHHHHHHHHHHhccccCCC
Q 007775 533 IRSFLMAALRLDGMNSSAWYNLGLFYKS----QGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 533 A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
|+.+|+++++..| +.+++.+|.+|.. .++ +++|+.+|++++++.|+++
T Consensus 205 A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~---~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 205 ALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN---EKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC---STTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHHcCCHHH
Confidence 9999999999866 8899999999999 899 9999999999999988653
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=6.7e-24 Score=184.99 Aligned_cols=173 Identities=20% Similarity=0.245 Sum_probs=167.4
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
+++.+|+.+|.++...|++++|+..|+++++.+ |.++.++..+|.++...|++++|+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~la~~~~~~~~~~~a~~ 60 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----------------------PNNVETLLKLGKTYMDIGLPNDAIE 60 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 567899999999999999999999999999998 6669999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
.+++++...|.++.++..+|.++...++++.|...+.+++...|+++.++..+|.++...|+++ +|+..|+++++.+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 61 SLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHD--KAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCT
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCch--hHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 546 MNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 546 ~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+++.+|+.+|.+|..+|+ +++|+.+|+++++++|+++
T Consensus 139 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGL---RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTHHHH
T ss_pred hhhhHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCccCH
Confidence 999999999999999999 9999999999999999875
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=6.5e-24 Score=194.27 Aligned_cols=221 Identities=17% Similarity=0.160 Sum_probs=187.6
Q ss_pred hhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccC
Q 007775 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (590)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 348 (590)
..+..++.+|.++...|+ +++|+..|++++ ..+|.++.++..+|.++...|++++|+..++++++..|
T Consensus 21 ~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGD-----------YEKAAEAFTKAI-EENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88 (243)
T ss_dssp --------------------------------CCTTHHHHH-TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHhhC-----------HHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 445689999999999999 999999999999 99999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccc
Q 007775 349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSD 428 (590)
Q Consensus 349 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 428 (590)
.+. .++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+..++++++..
T Consensus 89 ~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------- 155 (243)
T 2q7f_A 89 SAA-TAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---------- 155 (243)
T ss_dssp TCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----------
T ss_pred cch-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------
Confidence 998 9999999999999999999999999999998 778999999999999999999999999999987
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007775 429 KRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID 508 (590)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 508 (590)
|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++.+
T Consensus 156 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 156 ------------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp ------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred ------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 55588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcC
Q 007775 509 PAHVPSLISTAVVLRKLS 526 (590)
Q Consensus 509 p~~~~~~~~l~~~~~~~g 526 (590)
|+++.++..++.+....+
T Consensus 224 p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTCHHHHHHHTC------
T ss_pred cchHHHHHHHHHHHhhcc
Confidence 999999988887765544
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=4.2e-24 Score=199.51 Aligned_cols=241 Identities=10% Similarity=-0.028 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHH
Q 007775 298 QAKALQALVSAARSTN----MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 373 (590)
+++|+..|++++ ... |.++.+++.+|.++...|++++|+..|+++++.+|++. .++..+|.++...|++++|+.
T Consensus 21 ~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 21 QEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP-EVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHccCHHHHHH
Confidence 999999999999 763 45678899999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHH
Q 007775 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFI 453 (590)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 453 (590)
.++++++..| .+..++..+|.++...|++++|+..|+++++..| .+......++ .
T Consensus 99 ~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----------------------~~~~~~~~~~-~ 153 (275)
T 1xnf_A 99 AFDSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP----------------------NDPFRSLWLY-L 153 (275)
T ss_dssp HHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------------TCHHHHHHHH-H
T ss_pred HHHHHHhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----------------------CChHHHHHHH-H
Confidence 9999999998 7889999999999999999999999999999974 3344343333 3
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----hhhHHHHHHHHHHcCCCc
Q 007775 454 YINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH----VPSLISTAVVLRKLSDQS 529 (590)
Q Consensus 454 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~ 529 (590)
+...|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++...|.. +.++..+|.++...|+++
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 46679999999999999999998876654 7777888899999999999999887743 788999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 007775 530 NAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECF 574 (590)
Q Consensus 530 l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~ 574 (590)
+|+.+|+++++.+|++... .+.++...|+ +++|++.+
T Consensus 233 --~A~~~~~~al~~~p~~~~~---~~~~~~~l~~---~~~a~~~~ 269 (275)
T 1xnf_A 233 --SATALFKLAVANNVHNFVE---HRYALLELSL---LGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHTTCCTTCHH---HHHHHHHHHH---HHHC----
T ss_pred --HHHHHHHHHHhCCchhHHH---HHHHHHHHHH---HHhhHHHH
Confidence 9999999999999987543 4788899999 99999887
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=3e-23 Score=190.98 Aligned_cols=218 Identities=13% Similarity=0.086 Sum_probs=176.4
Q ss_pred hhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchH
Q 007775 311 STNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (590)
Q Consensus 311 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 389 (590)
..+|.+ +.+++.+|.++...|++++|+.+++++++.+|.+. .++..+|.++...|++++|+..++++++..| .+..
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~ 106 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA-DAHAALAVVFQTEMEPKLADEEYRKALASDS--RNAR 106 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHH
Confidence 334554 67788888888888888888888888888888887 8888888888888888888888888888877 6777
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007775 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSK 469 (590)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 469 (590)
++..+|.++...|++++|+..+++++. .+ ..|....++..+|.++...|++++|+.++++
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~-~~-------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQ-DT-------------------LYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT-CT-------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh-Cc-------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888888888888888776 11 1155677888888888888888888888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHH
Q 007775 470 SEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSS 549 (590)
Q Consensus 470 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~ 549 (590)
++...|.++.++..+|.++...|++++|+..++++++..|++..++..++.++...|+++ +|..+++++++..|+++.
T Consensus 167 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 167 SLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD--TAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTSHH
T ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHCCCCHH
Confidence 888888888888888888888888888888888888888888888888888888888877 888888888888888777
Q ss_pred HHHH
Q 007775 550 AWYN 553 (590)
Q Consensus 550 ~~~~ 553 (590)
++..
T Consensus 245 ~~~~ 248 (252)
T 2ho1_A 245 YQEF 248 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=7.4e-23 Score=184.73 Aligned_cols=217 Identities=14% Similarity=0.060 Sum_probs=170.5
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHH
Q 007775 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (590)
Q Consensus 313 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 392 (590)
.|.++.++..+|.++...|++++|+..++++++.+|++. .++..+|.++...|++++|+..+++++...| .+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~ 80 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE-LAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEINN 80 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHH
Confidence 466677788888888888888888888888888888877 7888888888888888888888888888777 6677778
Q ss_pred HHHHHHHHh-cCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007775 393 TKAKVQLVQ-GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSE 471 (590)
Q Consensus 393 ~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 471 (590)
.+|.++... |++++|+..++++++ .|. .|....++..+|.++...|++++|+.++++++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~-~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALA-DPT-------------------YPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHT-STT-------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHc-CcC-------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888 888888888888777 221 15557777888888888888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 472 AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP-AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
+..|.++.++..+|.++...|++++|+..++++++..| +++..+..++.++...|+.+ +|..+++.+.+.+|+++.+
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ--AAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH--HHHHHHHHHHHhCCCCHHH
Confidence 88888888888888888888888888888888888777 77777777777777788777 7777777777778877776
Q ss_pred HHHH
Q 007775 551 WYNL 554 (590)
Q Consensus 551 ~~~l 554 (590)
...+
T Consensus 219 ~~~l 222 (225)
T 2vq2_A 219 QTVL 222 (225)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=3.2e-23 Score=190.81 Aligned_cols=212 Identities=15% Similarity=0.033 Sum_probs=200.3
Q ss_pred ccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcc
Q 007775 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (590)
Q Consensus 346 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 425 (590)
.+|.+...++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+..|+++++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------- 101 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASD------- 101 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------
Confidence 45555228899999999999999999999999999988 789999999999999999999999999999987
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 426 SSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA--ISSYSASKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
|.+..++..+|.++...|++++|+.++++++. ..|.++.++..+|.++...|++++|+..|++
T Consensus 102 ---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 102 ---------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55588999999999999999999999999999 8888899999999999999999999999999
Q ss_pred HhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 504 ALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 504 al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
+++..|.++.++..+|.++...|+++ +|+..++++++..|.++.++..++.++...|+ +++|..++++++++.|+
T Consensus 167 ~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 167 SLRLNRNQPSVALEMADLLYKEREYV--PARQYYDLFAQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHhcCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999 99999999999999998
Q ss_pred CCC
Q 007775 584 APV 586 (590)
Q Consensus 584 ~~~ 586 (590)
++.
T Consensus 242 ~~~ 244 (252)
T 2ho1_A 242 SLE 244 (252)
T ss_dssp SHH
T ss_pred CHH
Confidence 864
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=9e-23 Score=184.15 Aligned_cols=211 Identities=11% Similarity=0.012 Sum_probs=198.5
Q ss_pred ccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcc
Q 007775 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (590)
Q Consensus 346 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 425 (590)
..|.++ .++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+..+++++...
T Consensus 3 ~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------- 72 (225)
T 2vq2_A 3 KANQVS-NIKTQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------- 72 (225)
T ss_dssp -CCHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred CCcccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------
Confidence 346666 8999999999999999999999999999998 778999999999999999999999999999987
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHhc-CChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007775 426 SSDKRFYKGSANHARSLELEVWLDLAFIYINL-SQWHDAEICLSKSEA--ISSYSASKCHATGVLYEKKGLYKEAIKAFR 502 (590)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 502 (590)
|.+..++..+|.++... |++++|+.++++++. ..|.++.++..+|.++...|++++|+..++
T Consensus 73 ---------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 73 ---------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp ---------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55688999999999999 999999999999999 666678999999999999999999999999
Q ss_pred HHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 503 SALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG-MNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 503 ~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
++++..|+++.++..+|.++...|+++ +|...++++++..| .++..+..++.++...|+ .++|..+++.+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 138 RSLAAQPQFPPAFKELARTKMLAGQLG--DADYYFKKYQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhC
Confidence 999999999999999999999999999 99999999999999 999999999999999999 999999999999999
Q ss_pred cCCCC
Q 007775 582 ETAPV 586 (590)
Q Consensus 582 p~~~~ 586 (590)
|+++.
T Consensus 213 p~~~~ 217 (225)
T 2vq2_A 213 PYSEE 217 (225)
T ss_dssp TTCHH
T ss_pred CCCHH
Confidence 98864
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=1.8e-23 Score=207.63 Aligned_cols=285 Identities=15% Similarity=0.106 Sum_probs=220.1
Q ss_pred CchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhH
Q 007775 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMEST 272 (590)
Q Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 272 (590)
.....++.+|..+...|++++|+..|++++ ...|+++. ....
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al--~~~~~~~~------------------------------------~~~~ 87 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAI--QAGTEDLR------------------------------------TLSA 87 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCSCHH------------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HhcccChh------------------------------------HHHH
Confidence 344555666666666666666666666666 22332211 1224
Q ss_pred HHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 007775 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (590)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 346 (590)
++..+|.++...|+ +++|+..|++++ .. .|....++..+|.++...|++++|+.+++++++.
T Consensus 88 ~~~~lg~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 88 IYSQLGNAYFYLGD-----------YNKAMQYHKHDL-TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp HHHHHHHHHHHHTC-----------HHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67777888888888 888888888887 65 3555677888888888889999999888888876
Q ss_pred ------cCCCcHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHhccC----CCCchHHHHHHHHHHH
Q 007775 347 ------EGGSNLKGWLLMARILSAQKR-----------------YEDAETILNAALDQTG----KWEQGELLRTKAKVQL 399 (590)
Q Consensus 347 ------~p~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~a~~~~~----~~~~~~~~~~la~~~~ 399 (590)
.|... .++..+|.++...|+ +++|+.+++++++..+ .+....++..+|.++.
T Consensus 156 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 234 (411)
T 4a1s_A 156 ARQLGDRLSEG-RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY 234 (411)
T ss_dssp HHHHTCHHHHH-HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhchHHHH-HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 44444 688889999999999 8899998888877642 1134568889999999
Q ss_pred HhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--
Q 007775 400 VQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS-- 477 (590)
Q Consensus 400 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-- 477 (590)
..|++++|+..++++++..+... .......++..+|.++...|++++|+.++++++...+..
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 235 LLGDFQAAIEHHQERLRIAREFG----------------DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHT----------------CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HcCChHHHHHHHHHHHHHHHhcC----------------CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999875431 112335688999999999999999999999999887654
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC
Q 007775 478 ----ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH------VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 478 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~ 546 (590)
..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|+++ +|..+|++++++.+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE--RALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHhh
Confidence 6778899999999999999999999998875433 458889999999999998 999999999998764
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=5.8e-23 Score=179.06 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=114.3
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHH
Q 007775 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (590)
Q Consensus 315 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~l 394 (590)
.++.+|+.+|.+|...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+.+++...| .+..++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV-ETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHH
Confidence 3455666667777667777777777777766666666 6666666666666666666666666666666 556666666
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS 474 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 474 (590)
|.++...++++.|...+.+++... |.+..++..+|.++...|++++|+..|+++++.+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~----------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN----------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 666666666666666666666665 4445666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007775 475 SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH 511 (590)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 511 (590)
|.++.++..+|.++..+|++++|+..|+++++++|++
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 6666666666666666666666666666666666654
No 54
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=1.5e-20 Score=198.67 Aligned_cols=398 Identities=13% Similarity=0.094 Sum_probs=294.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCChhh-HHHHHHHHHHHHhhcCCCCC-------CCCcccccCCccccCcchHH
Q 007775 69 LPELWKLADAPRETIMSYRRALLPCWNLDAET-TAKLQKEFAIFLLYCGGETC-------PPNLRSQMGSSFVPRNNIEE 140 (590)
Q Consensus 69 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~ll~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 140 (590)
....|...|.+.+|+..|++++.. +.++. -..++..++...++...... .......++..+...+.++|
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence 346788999999999999999955 22111 11111112222222211110 00001223455667888888
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 007775 141 AILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRT 220 (590)
Q Consensus 141 a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (590)
|..++... ... ...+...+...|+++.|.+..+++ ..+.+|+.+|..+...|++++|++.|.+
T Consensus 1068 Af~IYkKa---------~~~---~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1068 AFAIFRKF---------DVN---TSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHc---------CCH---HHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 88776321 111 111223344788899999988865 5689999999999999999999999977
Q ss_pred hhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHH
Q 007775 221 LLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300 (590)
Q Consensus 221 ~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 300 (590)
+ +++..+...+ .++.+.|++++|++++..+.+..++.. +...+|.+|.+.++ +++
T Consensus 1131 A-------dD~say~eVa-~~~~~lGkyEEAIeyL~mArk~~~e~~------Idt~LafaYAKl~r-----------lee 1185 (1630)
T 1xi4_A 1131 A-------DDPSSYMEVV-QAANTSGNWEELVKYLQMARKKARESY------VETELIFALAKTNR-----------LAE 1185 (1630)
T ss_pred c-------CChHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhccccc------ccHHHHHHHHhhcC-----------HHH
Confidence 5 4566666666 445677889999999999998875533 34458888988888 664
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007775 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (590)
Q Consensus 301 A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 380 (590)
++.| + ...+...+..+|..+...|++++|..+|.++ ..|..++.++.+.|++++|++.++++
T Consensus 1186 -le~f---I---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1186 -LEEF---I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred -HHHH---H---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 3333 3 1334566778999999999999999999995 58889999999999999999999987
Q ss_pred ccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCCh
Q 007775 381 QTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQW 460 (590)
Q Consensus 381 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 460 (590)
.+..+|...+.++...|+|..|..+... +..+ ++.+..++..|...|.+
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~-------------------------~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH-------------------------ADELEELINYYQDRGYF 1296 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC-------------------------HHHHHHHHHHHHHcCCH
Confidence 3457899999999999999999987764 3332 55666889999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCC-----CChhhHHHHHHHHHHcCCCchHHH
Q 007775 461 HDAEICLSKSEAISSYSASKCHATGVLYEK--KGLYKEAIKAFRSALNIDP-----AHVPSLISTAVVLRKLSDQSNAVI 533 (590)
Q Consensus 461 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~l~~A 533 (590)
++|+.+++.++.++|.+...+..+|.++.+ -++..++++.|...+.+.| ++...|..+..+|.+-|+++ .|
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d--nA 1374 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD--NA 1374 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH--HH
Confidence 999999999999999999999888888866 4578889999998888777 77889999999999999998 88
Q ss_pred HHHHHHHHh------------hcCCCHHHHHHHHHHHHHhC
Q 007775 534 RSFLMAALR------------LDGMNSSAWYNLGLFYKSQG 562 (590)
Q Consensus 534 ~~~~~~a~~------------~~p~~~~~~~~l~~~~~~~g 562 (590)
......... ..+.+++.++.....|...+
T Consensus 1375 ~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1375 IITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 743332221 25678899998888888666
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=7.7e-22 Score=183.86 Aligned_cols=229 Identities=14% Similarity=0.150 Sum_probs=211.1
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHccc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLE 347 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 347 (590)
.+++.+|.++...|+ +++|+..|++++ . |.++.+++.+|.++.. .+++++|+.+|+++++.+
T Consensus 7 ~a~~~lg~~~~~~~~-----------~~~A~~~~~~a~-~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 7 KELVGLGAKSYKEKD-----------FTQAKKYFEKAC-D--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp HHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCC-----------HHHHHHHHHHHH-H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 689999999999999 999999999999 6 7889999999999999 999999999999999885
Q ss_pred CCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHh
Q 007775 348 GGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQ 419 (590)
Q Consensus 348 p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~ 419 (590)
++ .++..+|.++.. .+++++|+.+|+++++.. ++.++..+|.+|.. .+++++|+..|+++++..
T Consensus 73 --~~-~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 73 --YS-NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp --CH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred --CH-HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence 56 899999999999 999999999999999874 57899999999999 999999999999999864
Q ss_pred hhhhcccccccccccccccccchHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----c
Q 007775 420 VQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN----LSQWHDAEICLSKSEAISSYSASKCHATGVLYEK----K 491 (590)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~ 491 (590)
++.++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.++.. .
T Consensus 145 -----------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 145 -----------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp -----------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSC
T ss_pred -----------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC
Confidence 26789999999999 99999999999999987 468999999999999 9
Q ss_pred CCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH----cCCCchHHHHHHHHHHHhhcCCCHHHH
Q 007775 492 GLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK----LSDQSNAVIRSFLMAALRLDGMNSSAW 551 (590)
Q Consensus 492 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~l~~A~~~~~~a~~~~p~~~~~~ 551 (590)
+++++|+.+|+++++..| +.++..+|.++.. .++++ +|+.+|+++++..|.++..+
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~--~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEK--QAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCST--THHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHH--HHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999866 8899999999999 99999 99999999999988654433
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=4.7e-23 Score=198.37 Aligned_cols=270 Identities=16% Similarity=0.146 Sum_probs=199.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh------CCCChHH
Q 007775 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST------NMRDLSI 319 (590)
Q Consensus 246 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~p~~~~~ 319 (590)
|++++|+..++++++..|.+. .....++..+|.++...|+ +++|+..+++++ .. .|....+
T Consensus 19 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTEDL-KTLSAIYSQLGNAYFYLHD-----------YAKALEYHHHDL-TLARTIGDQLGEAKA 85 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCcccH-HHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHH-HHhhcccccHHHHHH
Confidence 344444444444444444332 1223467777777777887 778888887776 54 2334567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCc-----HHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKR--------------------YEDAETI 374 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~--------------------~~~A~~~ 374 (590)
+..+|.++...|++++|+..++++++..|... ..++..+|.++...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 78888888888888888888888887655432 1377888888888888 8888888
Q ss_pred HHHHHhccC----CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHH
Q 007775 375 LNAALDQTG----KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDL 450 (590)
Q Consensus 375 ~~~a~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (590)
+++++...+ .+....++..+|.++...|++++|+..++++++..+.. ...+....++..+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~~~~~~~~~l 229 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----------------GDKAAERRAYSNL 229 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----------------CChHHHHHHHHHH
Confidence 888876532 11335678889999999999999999999998887532 1113345688899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------hhhHHHH
Q 007775 451 AFIYINLSQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH------VPSLIST 518 (590)
Q Consensus 451 a~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 518 (590)
|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 309 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999999999999998876654 6678889999999999999999999988765433 4478889
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcCC
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p~ 546 (590)
|.++...|+++ +|..++++++++.+.
T Consensus 310 a~~~~~~g~~~--~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 310 GNAYTALGNHD--QAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHTCHH--HHHHHHHHHHHC---
T ss_pred HHHHHHcCChH--HHHHHHHHHHHHHHh
Confidence 99999999988 999999999887664
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=1.5e-23 Score=210.61 Aligned_cols=215 Identities=13% Similarity=0.082 Sum_probs=193.6
Q ss_pred cCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHH
Q 007775 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY-EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409 (590)
Q Consensus 331 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 409 (590)
+.+++++..+++.....|.+. .+++.+|.++...|++ ++|+..|+++++.+| .+..++..+|.+|...|++++|+.
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a-~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEA-QALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhH-HHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 346677777777777788777 8888888888888888 888888888888887 778888888888888888888888
Q ss_pred HHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCHHH
Q 007775 410 TYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINL---------SQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
.|+++++.+ |. ..++..+|.++... |++++|+..|+++++++|+++.+
T Consensus 159 ~~~~al~~~----------------------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 215 (474)
T 4abn_A 159 CFSGALTHC----------------------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215 (474)
T ss_dssp HHHHHHTTC----------------------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhhC----------------------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 888888876 44 57888888888888 99999999999999999999999
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHhccCC---CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHH
Q 007775 481 CHATGVLYEKK--------GLYKEAIKAFRSALNIDP---AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSS 549 (590)
Q Consensus 481 ~~~l~~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~ 549 (590)
|..+|.++... |++++|+..|+++++++| +++.++.++|.++...|+++ +|+..|+++++++|+++.
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG--EALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHH
Confidence 99999999999 999999999999999999 99999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHH
Q 007775 550 AWYNLGLFYKSQGTQSSKLEAAECFEA 576 (590)
Q Consensus 550 ~~~~l~~~~~~~g~~~~~~~A~~~~~~ 576 (590)
++..++.++...|+ +++|+..+.+
T Consensus 294 a~~~l~~~~~~lg~---~~eAi~~~~~ 317 (474)
T 4abn_A 294 PQQREQQLLEFLSR---LTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhcc
Confidence 99999999999999 9999986644
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=1.5e-22 Score=191.86 Aligned_cols=222 Identities=12% Similarity=0.080 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHcccCCCcHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHh-ccCCCCchHHHHHHHHHH
Q 007775 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSA-------QKRY-------EDAETILNAALD-QTGKWEQGELLRTKAKVQ 398 (590)
Q Consensus 334 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~a~~-~~~~~~~~~~~~~la~~~ 398 (590)
++|+..|++++..+|.++ .+|..+|.++.. .|++ ++|...|+++++ ..| ++..+|..+|.++
T Consensus 33 ~~a~~~~~~al~~~p~~~-~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p--~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP-DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK--KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc--ccHHHHHHHHHHH
Confidence 455555555555555555 555555555542 3443 555555555555 344 4455555555555
Q ss_pred HHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 399 LVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELE-VWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 399 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
...|++++|...|+++++.. |.++. +|..+|.++.+.|++++|+..|+++++..|.+
T Consensus 110 ~~~~~~~~A~~~~~~al~~~----------------------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIE----------------------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSS----------------------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HhcCCHHHHHHHHHHHHhcc----------------------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 55555555555555555543 22232 55555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh---cC-CCHHHHH
Q 007775 478 ASKCHATGVLYEK-KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL---DG-MNSSAWY 552 (590)
Q Consensus 478 ~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~---~p-~~~~~~~ 552 (590)
..+|...+.+... .|++++|+..|+++++.+|+++.+|..++.++...|+++ +|+..|++++.. .| ....+|.
T Consensus 168 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~--~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN--NTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 5555444443222 455555555555555555555555555555555555555 555555555553 33 2445555
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 553 NLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 553 ~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
.++..+...|+ +++|..+++++++..|+++
T Consensus 246 ~~~~~~~~~g~---~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 246 RFLAFESNIGD---LASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHSC---HHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHHccccc
Confidence 55555555555 5555555555555555543
No 59
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=1.7e-22 Score=198.34 Aligned_cols=242 Identities=11% Similarity=-0.000 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccc------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-----Cc
Q 007775 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLE------GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-----EQ 387 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~ 387 (590)
.++.+|..+...|++++|+.+++++++.. +... .++..+|.++...|++++|+.+++++++..+.. ..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKA-EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 45569999999999999999999999872 2234 789999999999999999999999999986532 23
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL 467 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 467 (590)
..++..+|.++...|++++|+..|+++++..+.. .+.+....++.++|.+|...|++++|+.++
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE----------------KQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5688999999999999999999999999997543 222455679999999999999999999999
Q ss_pred HHHHh-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----CCChhhHHHHHHHHHHcCC---CchHHH
Q 007775 468 SKSEA-----IS-SYSASKCHATGVLYEKKGLYKEAIKAFRSALNID-----PAHVPSLISTAVVLRKLSD---QSNAVI 533 (590)
Q Consensus 468 ~~a~~-----~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~---~~l~~A 533 (590)
++++. .+ |..+.++..+|.++...|++++|+.++++++++. |.....+..+|.++...|+ +. +|
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~a 325 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ--GF 325 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH--HH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH--HH
Confidence 99999 45 7778899999999999999999999999999873 3334446789999999998 66 88
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 534 RSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 534 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
+.++++. ...|....++..+|.+|...|+ +++|..+|++++++...
T Consensus 326 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~---~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 326 FDFLESK-MLYADLEDFAIDVAKYYHERKN---FQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHC-cCHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence 8888776 4445556788999999999999 99999999999987654
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=4e-23 Score=207.52 Aligned_cols=213 Identities=16% Similarity=0.140 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCH-HHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL-NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 376 (590)
+++++..+++.. ...|.+..+++.+|.++...|++ ++|+.+|+++++.+|++. .+|..+|.++...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV-EAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788999999988 88999999999999999999999 999999999999999999 999999999999999999999999
Q ss_pred HHHhccCCCCchHHHHHHHHHHHHh---------cCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHH
Q 007775 377 AALDQTGKWEQGELLRTKAKVQLVQ---------GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVW 447 (590)
Q Consensus 377 ~a~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (590)
++++..| + ..++..+|.++... |++++|+..|+++++.+ |.++.+|
T Consensus 162 ~al~~~p--~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~ 216 (474)
T 4abn_A 162 GALTHCK--N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----------------------VLDGRSW 216 (474)
T ss_dssp HHHTTCC--C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC----------------------TTCHHHH
T ss_pred HHHhhCC--C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC----------------------CCCHHHH
Confidence 9999998 5 68999999999999 99999999999999997 6668999
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHH
Q 007775 448 LDLAFIYINL--------SQWHDAEICLSKSEAISS---YSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLI 516 (590)
Q Consensus 448 ~~la~~~~~~--------g~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 516 (590)
..+|.+|... |++++|+.+|+++++++| .++.+++.+|.++...|++++|+..|+++++++|+++.++.
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 296 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999 999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHH
Q 007775 517 STAVVLRKLSDQSNAVIRSFLMA 539 (590)
Q Consensus 517 ~l~~~~~~~g~~~l~~A~~~~~~ 539 (590)
.++.++...|+++ +|+..+.+
T Consensus 297 ~l~~~~~~lg~~~--eAi~~~~~ 317 (474)
T 4abn_A 297 REQQLLEFLSRLT--SLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHH--HHHHHTTT
T ss_pred HHHHHHHHHHHHH--HHHHHhcc
Confidence 9999999999988 88876543
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=1.2e-22 Score=189.54 Aligned_cols=229 Identities=12% Similarity=-0.030 Sum_probs=204.0
Q ss_pred HHHHHccCHHHHHHHHHHHHcc----cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Q 007775 325 LEYAEQRKLNAAHYYAKMLLKL----EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (590)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~ 400 (590)
......|++++|+..++++++. .|.+. .++..+|.++...|++++|+..|+++++..| .+..++..+|.++..
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERA-QLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhH-HHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHH
Confidence 3444568999999999999987 34556 8999999999999999999999999999998 789999999999999
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
.|++++|+..|+++++.+ |.++.++..+|.++...|++++|+.+|+++++..|+++..
T Consensus 90 ~~~~~~A~~~~~~al~~~----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELD----------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC----------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccCHHHHHHHHHHHHhcC----------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHH
Confidence 999999999999999997 5558899999999999999999999999999999999877
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC----CHHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM----NSSAWYNLGL 556 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~----~~~~~~~l~~ 556 (590)
....+.+ ...|++++|+..+++++...|++...+. ++.++...++.+ +|+..+++++...|. ++.++..+|.
T Consensus 148 ~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 148 SLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQ--TLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp HHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHH--HHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHH--HHHHHHHHHhcccccccccccHHHHHHHH
Confidence 6666544 6679999999999999999988766554 777777777777 999999999987764 3789999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 557 FYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 557 ~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
++...|+ +++|+..|+++++++|++.
T Consensus 224 ~~~~~g~---~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 224 YYLSLGD---LDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHHTTC---HHHHHHHHHHHHTTCCTTC
T ss_pred HHHHcCC---HHHHHHHHHHHHhCCchhH
Confidence 9999999 9999999999999999765
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=1.7e-21 Score=184.72 Aligned_cols=259 Identities=11% Similarity=0.031 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhc-------hhhccChHHHHHHHHHHHHHHHHHHHh-hCCCChHHH
Q 007775 249 EEGATFASRALECLGDGCDQMESTANCLLGISLSAQ-------SKVAITDFDRATRQAKALQALVSAARS-TNMRDLSIL 320 (590)
Q Consensus 249 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~p~~~~~~ 320 (590)
++|+..|++++..+|.++ .+|+.+|..+... |+. .......++|+..|++++ . ..|++..+|
T Consensus 33 ~~a~~~~~~al~~~p~~~-----~~w~~~~~~~~~~~~~l~~~g~~----~~~~~~~~~A~~~~~rAl-~~~~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDM----NNAKLFSDEAANIYERAI-STLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHHHHH-TTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHhchhhhhccch----hhcccchHHHHHHHHHHH-HHhCcccHHHH
Confidence 578889999999999887 5888888777543 440 011112489999999999 8 799999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcccCCCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 007775 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK-GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (590)
Q Consensus 321 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~ 399 (590)
..+|.++...|++++|...|+++++..|.+. . +|..++.++...|++++|..+|+++++..| ....++...+.+..
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccccCc-cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 6 999999999999999999999999999988 66777776666654
Q ss_pred H-hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CC
Q 007775 400 V-QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI---SS 475 (590)
Q Consensus 400 ~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p 475 (590)
. .|++++|+..|+++++.+ |.++.+|..++.++...|++++|+.+|++++.. .|
T Consensus 180 ~~~~~~~~A~~~~~~al~~~----------------------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY----------------------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH----------------------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHcCCHHHHHHHHHHHHHhC----------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 4 699999999999999998 566899999999999999999999999999995 45
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHH
Q 007775 476 -YSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNL 554 (590)
Q Consensus 476 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l 554 (590)
....+|..++..+...|++++|...++++++..|++...... +.+ ..++ +.+.++|+++..++.|
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~---~~r~----------~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-ALL---VDRY----------KFMDLYPCSASELKAL 303 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH---HTTT----------CBTTBCSSCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchH-HHH---HHHH----------HhcccCCCCHHHHHhc
Confidence 367899999999999999999999999999999987644321 111 1111 4456899999998887
Q ss_pred HH
Q 007775 555 GL 556 (590)
Q Consensus 555 ~~ 556 (590)
|.
T Consensus 304 gY 305 (308)
T 2ond_A 304 GY 305 (308)
T ss_dssp TC
T ss_pred CC
Confidence 74
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.9e-23 Score=194.97 Aligned_cols=251 Identities=19% Similarity=0.161 Sum_probs=199.3
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--
Q 007775 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT-- 382 (590)
Q Consensus 313 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-- 382 (590)
+|....++..+|.++...|++++|+.+++++++. .|... .++..+|.++...|++++|+.++++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA-TMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4555688999999999999999999999999984 45555 889999999999999999999999999873
Q ss_pred ----CCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcC
Q 007775 383 ----GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLS 458 (590)
Q Consensus 383 ----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 458 (590)
..+....++..+|.++...|++++|+..|+++++..... .....+....++..+|.++...|
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV--------------LGKDHPDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh--------------cCCCChHHHHHHHHHHHHHHHcC
Confidence 223567889999999999999999999999999885211 01223666889999999999999
Q ss_pred ChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------CCChhh------H
Q 007775 459 QWHDAEICLSKSEAI--------SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID---------PAHVPS------L 515 (590)
Q Consensus 459 ~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~------~ 515 (590)
++++|+.++++++.. .|....++..+|.++...|++++|+.+++++++.. +..... +
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 999999999999988 66667889999999999999999999999999653 333333 3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 516 ISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 516 ~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
..++..+...+.+. +|...+.++....|..+.++..+|.+|...|+ +++|+.+|++++++.|+
T Consensus 248 ~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFG--EYGGWYKACKVDSPTVTTTLKNLGALYRRQGK---FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSC--CCC---------CHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHH--HHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhc
Confidence 34444455666777 88889999999999999999999999999999 99999999999999885
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=3.3e-21 Score=174.30 Aligned_cols=220 Identities=13% Similarity=0.054 Sum_probs=190.0
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHH
Q 007775 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (590)
Q Consensus 314 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 392 (590)
+.++..++.+|.++...|++++|+..|+++++.+| .+. .+++.+|.++...|++++|+..++++++..| .+..++.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS-VTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHH
Confidence 56789999999999999999999999999999998 777 8999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
.+|.++...|++++|+..|+++++..|++...+ .....++..+|.++...|++++|+..|+++++
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE---------------KLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH---------------HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 999999999999999999999999985431110 11236799999999999999999999999999
Q ss_pred cCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 473 ISSY--SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 473 ~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
.+|+ ++.++..+|.++...|+ ..++++..+.+.....+ .+......+.++ +|+.+|+++++++|+++.+
T Consensus 146 ~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~--~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 146 VTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFK--KAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHCTTCHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHH--HHHHHHHHHhhcCCCCHHH
Confidence 9999 89999999999976654 45677777776664443 344455667777 9999999999999999999
Q ss_pred HHHHHHHHHH
Q 007775 551 WYNLGLFYKS 560 (590)
Q Consensus 551 ~~~l~~~~~~ 560 (590)
+..++.+...
T Consensus 217 ~~~l~~i~~~ 226 (228)
T 4i17_A 217 KQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9888877543
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=2.5e-22 Score=209.03 Aligned_cols=171 Identities=17% Similarity=0.168 Sum_probs=135.5
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
+++.+++.+|.++..+|++++|+..|+++++++ |.+..++.++|.+|...|++++|+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----------------------P~~~~a~~nLg~~l~~~g~~~eA~~ 64 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF----------------------PEFAAAHSNLASVLQQQGKLQEALM 64 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 677777778888888888888888888887776 5557777788888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|+++.++.++|.++...|+++ +|+..|+++++++|
T Consensus 65 ~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~--eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP--EAIASYRTALKLKP 142 (723)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888888888888888888877 88888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 546 MNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 546 ~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
+++.++.++|.++...|+ +++|.+.|++++++.|+
T Consensus 143 ~~~~a~~~L~~~l~~~g~---~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCD---WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CCHHHHHHHHHHHHHTTC---CTTHHHHHHHHHHHHHH
T ss_pred CChHHHhhhhhHHHhccc---HHHHHHHHHHHHHhChh
Confidence 888888888888888888 88888888887777654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=4.9e-22 Score=195.04 Aligned_cols=243 Identities=16% Similarity=0.114 Sum_probs=204.8
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh---CCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---NMR---DLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 345 (590)
..++.+|..+...|+ +++|+..|++++ .. .++ ...+++.+|.+|...|++++|+.+++++++
T Consensus 104 ~~~~~~g~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 104 YFNFFRGMYELDQRE-----------YLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----------HHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356679999999999 999999999999 76 222 347899999999999999999999999998
Q ss_pred ccCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC----chHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 007775 346 LEGGSN------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (590)
Q Consensus 346 ~~p~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l 415 (590)
..+... ..++..+|.++...|++++|+..++++++..+... ...++..+|.+|...|++++|+..|++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 754432 15889999999999999999999999998865222 23588899999999999999999999999
Q ss_pred HHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHH
Q 007775 416 AALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS-----YSASKCHATGVLYEK 490 (590)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~ 490 (590)
+..+.. ...|..+.++..+|.++...|++++|+.++++++.+.+ .....+..+|.++..
T Consensus 252 ~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 252 AVFEES----------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp HHHHHT----------------TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred HHHHhh----------------ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 976421 12266688999999999999999999999999998743 333446789999999
Q ss_pred cCC---HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 491 KGL---YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 491 ~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
.|+ +++|+..+++. ...|....++..+|.+|...|+++ +|..+|++++++..
T Consensus 316 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~--~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQ--KASAYFLKVEQVRQ 370 (383)
T ss_dssp SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHH
Confidence 999 88999999887 444556778899999999999999 99999999998654
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.88 E-value=1.3e-20 Score=184.38 Aligned_cols=240 Identities=13% Similarity=-0.018 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcccCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-----Cc
Q 007775 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG------SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-----EQ 387 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~ 387 (590)
.++..|..+...|++++|+.+|+++++..+. .. .++..+|.++...|++++|+..++++++..+.. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKA-EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 5678899999999999999999999976432 33 689999999999999999999999999876532 23
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL 467 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 467 (590)
..++..+|.++...|++++|+..|+++++..+.. ...+....++.++|.+|...|++++|+.++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----------------QNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5678899999999999999999999999986422 122345678999999999999999999999
Q ss_pred HHHHh-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CChhhHHHHHHHHHHcCC---CchHHHH
Q 007775 468 SKSEA-----ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP-----AHVPSLISTAVVLRKLSD---QSNAVIR 534 (590)
Q Consensus 468 ~~a~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~---~~l~~A~ 534 (590)
++++. .+|..+.++..+|.++...|++++|+.++++++++.+ .....+..++.++...++ +. +|+
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~--~al 323 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIH--DLL 323 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHH--HHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH--HHH
Confidence 99999 7787888999999999999999999999999998743 334456777888888887 66 888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 535 SFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
.++++. ...|.....+..+|.+|...|+ +++|..+|++++++.
T Consensus 324 ~~~~~~-~~~~~~~~~~~~la~~y~~~g~---~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 324 SYFEKK-NLHAYIEACARSAAAVFESSCH---FEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHhC-CChhHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHH
Confidence 888762 3344456778899999999999 999999999998764
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=1.3e-21 Score=203.74 Aligned_cols=172 Identities=17% Similarity=0.175 Sum_probs=115.8
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccc
Q 007775 347 EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (590)
Q Consensus 347 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 426 (590)
.|++. .++.++|.++..+|++++|+..|+++++.+| ++..++..+|.++..+|++++|+..|+++++++
T Consensus 5 ~P~~a-~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-------- 73 (723)
T 4gyw_A 5 CPTHA-DSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-------- 73 (723)
T ss_dssp -CHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 45555 6666666666666666666666666666666 566666666666666666666666666666665
Q ss_pred ccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 427 SDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
|.++.+|.++|.++...|++++|+++|+++++++|+++.++.++|.++..+|++++|+..|+++++
T Consensus 74 --------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 74 --------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444666666666666677777777777777777777777777777777777777777777777777
Q ss_pred cCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 507 IDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 507 ~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
++|+++.++.++|.++...|+++ +|++.+++++++.|
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~~~--~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCDWT--DYDERMKKLVSIVA 176 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCCT--THHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhcccHH--HHHHHHHHHHHhCh
Confidence 77777777777777777777766 67777766666543
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=1.5e-21 Score=176.48 Aligned_cols=202 Identities=12% Similarity=0.056 Sum_probs=161.7
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccc
Q 007775 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (590)
Q Consensus 348 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 426 (590)
+.++ ..+..+|.++...|++++|+..|+++++.. + .+..+++.+|.++...|++++|+..|+++++.+
T Consensus 4 ~~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------- 72 (228)
T 4i17_A 4 TTDP-NQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------- 72 (228)
T ss_dssp CCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------
T ss_pred ccCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------
Confidence 4455 788888888888888888888888888764 5 567777888888888888888888888888876
Q ss_pred ccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHH
Q 007775 427 SDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSA-------SKCHATGVLYEKKGLYKEAIK 499 (590)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~ 499 (590)
|.++.++..+|.++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+.
T Consensus 73 --------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 73 --------------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp --------------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH
Confidence 56688888888888888888888888888888888887 568888888888888888888
Q ss_pred HHHHHhccCCC--ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007775 500 AFRSALNIDPA--HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAA 577 (590)
Q Consensus 500 ~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~a 577 (590)
.|+++++++|+ ++.++..+|.++...| ...++++..+.+.++..+ .+......+. +++|+.+|+++
T Consensus 139 ~~~~al~~~p~~~~~~~~~~l~~~~~~~~-------~~~~~~a~~~~~~~~~~~--~~~~~~~~~~---~~~A~~~~~~a 206 (228)
T 4i17_A 139 NYKHATDVTSKKWKTDALYSLGVLFYNNG-------ADVLRKATPLASSNKEKY--ASEKAKADAA---FKKAVDYLGEA 206 (228)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHGGGTTTCHHHH--HHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHH-------HHHHHHHHhcccCCHHHH--HHHHHHHHHH---HHHHHHHHHHH
Confidence 88888888888 8888888888886544 344566666666664443 3445566777 89999999999
Q ss_pred hccccCCCC
Q 007775 578 ASLEETAPV 586 (590)
Q Consensus 578 l~l~p~~~~ 586 (590)
++++|+++.
T Consensus 207 ~~l~p~~~~ 215 (228)
T 4i17_A 207 VTLSPNRTE 215 (228)
T ss_dssp HHHCTTCHH
T ss_pred hhcCCCCHH
Confidence 999999864
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=7.6e-20 Score=193.26 Aligned_cols=296 Identities=14% Similarity=0.115 Sum_probs=209.7
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHH
Q 007775 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280 (590)
Q Consensus 201 la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 280 (590)
+|.++...|.+++|..+|+++. .+. . ...+++...+.+++|.++++++ +.+ .+|+.+|.+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~--~----A~~VLie~i~nldrAiE~Aerv-----n~p-----~vWsqLAKA 1114 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNT--S----AVQVLIEHIGNLDRAYEFAERC-----NEP-----AVWSQLAKA 1114 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHH--H----HHHHHHHHHhhHHHHHHHHHhc-----CCH-----HHHHHHHHH
Confidence 6888888888888888888864 111 1 1122233445667777777655 222 588888888
Q ss_pred HhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHH
Q 007775 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (590)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 360 (590)
+...|+ +++|+..|.++ +++..+..++.++.+.|++++|+++|..+.+..++.. ....+|.
T Consensus 1115 ql~~G~-----------~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--Idt~Laf 1175 (1630)
T 1xi4_A 1115 QLQKGM-----------VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIF 1175 (1630)
T ss_pred HHhCCC-----------HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--ccHHHHH
Confidence 888888 88888888664 5778888888888888888888888888887775532 2334777
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccccccccc
Q 007775 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHAR 440 (590)
Q Consensus 361 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (590)
+|.+++++++ ++.|. . .+ +...+..+|..+...|++++|..+|.++
T Consensus 1176 aYAKl~rlee-le~fI---~-~~---n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------------------- 1221 (1630)
T 1xi4_A 1176 ALAKTNRLAE-LEEFI---N-GP---NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------------------- 1221 (1630)
T ss_pred HHHhhcCHHH-HHHHH---h-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------------------------
Confidence 7777777764 33331 1 22 2234446777777777777777777653
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-------------------------CCHHHHHHHHHHHHHcCCHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS-------------------------YSASKCHATGVLYEKKGLYK 495 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-------------------------~~~~~~~~l~~~~~~~g~~~ 495 (590)
..|..++.++.+.|++++|+++++++....+ .+++.+..++..|...|.++
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHH
Confidence 1355556666666666666666655532221 23455667888899999999
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHhCCCCchHHH
Q 007775 496 EAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG-----MNSSAWYNLGLFYKSQGTQSSKLEA 570 (590)
Q Consensus 496 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~g~~~~~~~A 570 (590)
+|+.++++++.++|.+...+..+|.++.+-.--.+.++.++|...+.+.| .+...|..+..+|.+.|+ ++.|
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e---~dnA 1374 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE---YDNA 1374 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhccc---HHHH
Confidence 99999999999999999999899998887654444588888888888777 678889999999999999 9999
Q ss_pred HHHHHH
Q 007775 571 AECFEA 576 (590)
Q Consensus 571 ~~~~~~ 576 (590)
+..+-.
T Consensus 1375 ~~tm~~ 1380 (1630)
T 1xi4_A 1375 IITMMN 1380 (1630)
T ss_pred HHHHHh
Confidence 854433
No 71
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=1.2e-19 Score=167.93 Aligned_cols=224 Identities=10% Similarity=0.047 Sum_probs=207.6
Q ss_pred CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhccCCCCchHHHHHHHHHH----HHh---c
Q 007775 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK--RYEDAETILNAALDQTGKWEQGELLRTKAKVQ----LVQ---G 402 (590)
Q Consensus 332 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~----~~~---g 402 (590)
..++|+..+.+++.++|++. .+|+..+.++...| ++++++..++.++..+| .+..+|+..+.++ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~-taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINELASHY-TIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT--TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCcHHH-HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHhccccC
Confidence 34689999999999999999 99999999999999 99999999999999999 8899999999998 666 7
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCHHH
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWH--DAEICLSKSEAISSYSASK 480 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~p~~~~~ 480 (590)
++++++..++++++.+ |.+..+|...+.++...|.++ +++++++++++.+|.+..+
T Consensus 125 ~~~~EL~~~~~~l~~~----------------------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA 182 (306)
T 3dra_A 125 DPYREFDILEAMLSSD----------------------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA 182 (306)
T ss_dssp CTHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH
Confidence 8999999999999998 666999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHcCC------HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc---CCCHHHH
Q 007775 481 CHATGVLYEKKGL------YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD---GMNSSAW 551 (590)
Q Consensus 481 ~~~l~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~---p~~~~~~ 551 (590)
|...+.+....|+ ++++++++.+++..+|++..+|+.++.++.+.|+.. ++...++.+++..+ |.++.++
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSI-TQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCG-GGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCCh-HHHHHHHHHHHhccCCCCCCHHHH
Confidence 9999999999987 999999999999999999999999999999999975 24666888888776 8899999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhc-cccCC
Q 007775 552 YNLGLFYKSQGTQSSKLEAAECFEAAAS-LEETA 584 (590)
Q Consensus 552 ~~l~~~~~~~g~~~~~~~A~~~~~~al~-l~p~~ 584 (590)
..++.++.+.|+ .++|+++|+.+.+ .+|-.
T Consensus 262 ~~la~~~~~~~~---~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 262 ETLAKIYTQQKK---YNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHccCC---HHHHHHHHHHHHhccChHH
Confidence 999999999999 9999999999996 78854
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=1.6e-20 Score=173.49 Aligned_cols=200 Identities=13% Similarity=0.049 Sum_probs=167.2
Q ss_pred cccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc---hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhh
Q 007775 345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (590)
Q Consensus 345 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 421 (590)
...|.++ ..++.+|..+...|++++|+..|+++++..| .+ ..+++.+|.++...|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 9 RLRHSSP-QEAFERAMEFYNQGKYDRAIEYFKAVFTYGR--THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp --CCSSH-HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS--CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 3456666 7888888888888888888888888888777 44 6788888888888888888888888888887543
Q ss_pred hhcccccccccccccccccchHHHHHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCCHHHH------------
Q 007775 422 TKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN--------LSQWHDAEICLSKSEAISSYSASKC------------ 481 (590)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~~------------ 481 (590)
+..+.+++.+|.++.. .|++++|+..|++++..+|+++.+.
T Consensus 86 -------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~ 146 (261)
T 3qky_A 86 -------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK 146 (261)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred -------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH
Confidence 5567889999999999 9999999999999999999987665
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHc----------CCCchHHHHHHHHHHHhh
Q 007775 482 -----HATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKL----------SDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 482 -----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~----------g~~~l~~A~~~~~~a~~~ 543 (590)
+.+|.++...|++++|+..|+++++..|++ +.++..+|.++..+ |+++ +|+..|+++++.
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~--~A~~~~~~~~~~ 224 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR--RAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH--HHHHHHHHHHHH
Confidence 888999999999999999999999999984 56899999999977 7777 999999999999
Q ss_pred cCCCH---HHHHHHHHHHHHhCCCCchHHHH
Q 007775 544 DGMNS---SAWYNLGLFYKSQGTQSSKLEAA 571 (590)
Q Consensus 544 ~p~~~---~~~~~l~~~~~~~g~~~~~~~A~ 571 (590)
+|+++ .+...++.++...|+ ++++.
T Consensus 225 ~p~~~~~~~a~~~l~~~~~~~~~---~~~~~ 252 (261)
T 3qky_A 225 FPDSPLLRTAEELYTRARQRLTE---LEGDA 252 (261)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHH---HHTCT
T ss_pred CCCChHHHHHHHHHHHHHHHHHH---hhhhh
Confidence 99985 456677888877777 65543
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.86 E-value=8.4e-18 Score=172.85 Aligned_cols=420 Identities=9% Similarity=-0.039 Sum_probs=297.4
Q ss_pred HhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC---hHHHHHHHHHhhcCCCCCC
Q 007775 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE---DLVALNLLRTLLSGSEDPK 229 (590)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~~p~ 229 (590)
.+...|.|...+..++......+.+..+...|++++...|.....|...+..-...|+ ++.+..+|++++.....|.
T Consensus 58 ~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 58 MIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred HHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 3456799999999999999999999999999999999999999999999999999999 9999999999994332235
Q ss_pred ChHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHcCC-CCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHH
Q 007775 230 CLPALLIASKICGEYPDL-------AEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (590)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~-------~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A 301 (590)
++..+...........+. .+.....|++++...+. +... ...|..........+. ....+.....+.+
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s--~~iW~~Yi~f~~~~~~--~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKS--IQFWNEYLHFLEHWKP--VNKFEEQQRVQYI 213 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSC--HHHHHHHHHHHHTCCC--CSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccc--hHHHHHHHHHHHhccc--cCcHHHHhHHHHH
Confidence 666665554433222221 12344788888876544 3211 1233222221111000 0000000013333
Q ss_pred HHHHHHHHHhhC-------------------------------------------------------CCC----------
Q 007775 302 LQALVSAARSTN-------------------------------------------------------MRD---------- 316 (590)
Q Consensus 302 ~~~~~~a~~~~~-------------------------------------------------------p~~---------- 316 (590)
..+|++++ ... |..
T Consensus 214 R~iy~raL-~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 214 RKLYKTLL-CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHT-TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHH-hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 33333333 211 100
Q ss_pred ---------hHHHHHHHHHHHHcc-------CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 007775 317 ---------LSILYRLSLEYAEQR-------KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE-TILNAAL 379 (590)
Q Consensus 317 ---------~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~ 379 (590)
...|......-...+ ..+.....|++++...|..+ ..|...+..+...|+.++|. .+|++++
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~-~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP-EIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 012222221111111 12345678999999999999 99999999999999999997 9999999
Q ss_pred hccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCC
Q 007775 380 DQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQ 459 (590)
Q Consensus 380 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 459 (590)
...| .+..+|...+.+....|++++|..+|++++...+..........................+|...+....+.|.
T Consensus 372 ~~~P--~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 372 QCIP--NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 9988 77888999999999999999999999999986432110000000000000000001245689999999999999
Q ss_pred hHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHH
Q 007775 460 WHDAEICLSKSEAI-SSYSASKCHATGVLYEKKGL-YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFL 537 (590)
Q Consensus 460 ~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~ 537 (590)
.+.|...|.++++. .+....+|...+.+....++ ++.|..+|+++++..|+++..|...+......|+.+ .|..+|
T Consensus 450 l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~--~AR~lf 527 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES--QVKSLF 527 (679)
T ss_dssp HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH--HHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH--HHHHHH
Confidence 99999999999987 44557778877877777654 899999999999999999999999999999999988 999999
Q ss_pred HHHHhhcCC---CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 538 MAALRLDGM---NSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 538 ~~a~~~~p~---~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
++++...|+ ....|......-...|+ .+.+..+++++.+..|+++
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~---~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGS---LNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCc
Confidence 999998883 56788888898899999 9999999999999999876
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=3.7e-20 Score=173.81 Aligned_cols=243 Identities=14% Similarity=0.061 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---cCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 007775 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQ---RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (590)
Q Consensus 300 ~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 376 (590)
+|.+++.++- +.-+.....+ .++.. +++++|+..|.++ +.++...|++++|+..|.
T Consensus 3 ~a~~~~~~a~-k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAE-KKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHH-HHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHH-HHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4666777776 5444432222 11222 2589999888887 456788999999999999
Q ss_pred HHHhccCCC----CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHH
Q 007775 377 AALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAF 452 (590)
Q Consensus 377 ~a~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 452 (590)
++++..+.. ..+.++..+|.+|...|++++|+..|++++++.+.. ........++..+|.
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~----------------g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR----------------GQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHH
Confidence 999985321 226789999999999999999999999999998532 111234678999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChh-------hHHHH
Q 007775 453 IYINL-SQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVP-------SLIST 518 (590)
Q Consensus 453 ~~~~~-g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l 518 (590)
+|... |++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|++++++.|++.. ++.++
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99996 99999999999999998764 467899999999999999999999999999987654 57899
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH-----HHHHHHHHH--HhCCCCchHHHHHHHHHHhccccCC
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA-----WYNLGLFYK--SQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~-----~~~l~~~~~--~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
|.++...|+++ +|+..|+++++++|+.... +..++..+. ..++ +++|+..|++++.++|.+
T Consensus 206 g~~~~~~g~~~--~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~---~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAV--AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ---LSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTCHH--HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT---HHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHcCCHH--HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH---HHHHHHHhccCCccHHHH
Confidence 99999999999 9999999999999987653 445666664 3466 999999999999998864
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=182.38 Aligned_cols=249 Identities=15% Similarity=0.105 Sum_probs=196.3
Q ss_pred hhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHccCHHHHHHHH
Q 007775 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--------NMRDLSILYRLSLEYAEQRKLNAAHYYA 340 (590)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 340 (590)
....++..+|.++...|+ +++|+..|++++ .. .|....++..+|.++...|++++|+.++
T Consensus 25 ~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 92 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGR-----------YEVAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92 (311)
T ss_dssp HHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345689999999999999 999999999999 74 5666788999999999999999999999
Q ss_pred HHHHccc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc------CCCCchHHHHHHHHHHHHhcCHhH
Q 007775 341 KMLLKLE--------GGSNLKGWLLMARILSAQKRYEDAETILNAALDQT------GKWEQGELLRTKAKVQLVQGQLKG 406 (590)
Q Consensus 341 ~~~l~~~--------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~~~la~~~~~~g~~~~ 406 (590)
++++... |... .++..+|.++...|++++|+.+++++++.. ..+....++..+|.++...|++++
T Consensus 93 ~~al~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 93 NDALAIREKTLGKDHPAVA-ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 9999763 4445 789999999999999999999999999874 123567789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---------CC
Q 007775 407 AVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS---------YS 477 (590)
Q Consensus 407 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p---------~~ 477 (590)
|+..|++++...... .....|....++..+|.++...|++++|+.++++++...| ..
T Consensus 172 A~~~~~~a~~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 172 VEYYYQRALEIYQTK--------------LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHHHHHHHHT--------------SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 999999999984221 0112366788999999999999999999999999997533 22
Q ss_pred HHH------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC
Q 007775 478 ASK------CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 478 ~~~------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~ 546 (590)
... +...+..+...+.+.+|...++++....|..+.++..+|.++...|+++ +|+.+|++++++.|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFE--AAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHhhc
Confidence 223 3344445556667777888899999889999999999999999999999 999999999998875
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=4.7e-19 Score=173.18 Aligned_cols=280 Identities=14% Similarity=0.025 Sum_probs=228.2
Q ss_pred hhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh-----HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 007775 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-----SILYRLSLEYAEQRKLNAAHYYAKMLL 344 (590)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l 344 (590)
...++..+|.++...|+ +++|+..+++++ ...|.+. .++..+|.++...|++++|...+++++
T Consensus 13 ~~~~~~~~a~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGN-----------PDEAERLAKLAL-EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34577888999999999 999999999999 7766543 267889999999999999999999999
Q ss_pred cccCCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC------CCchHHHHHHHHHHHHhcCHhHHHHHHHH
Q 007775 345 KLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGK------WEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (590)
Q Consensus 345 ~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (590)
...|... ..++..+|.++...|++++|+..++++++..+. +....++..+|.++...|++++|...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8765432 134678999999999999999999999987531 23456778899999999999999999999
Q ss_pred HHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CHHHHH-----HHHH
Q 007775 414 LLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY--SASKCH-----ATGV 486 (590)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~-----~l~~ 486 (590)
++...+.. ..+....++..+|.++...|++++|..++++++.+.+. .+..+. .++.
T Consensus 161 al~~~~~~-----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 161 GIEVLSSY-----------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 223 (373)
T ss_dssp HHHHTTTS-----------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhhcc-----------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 99987432 01224578899999999999999999999999876332 221221 3455
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCC----hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC------CHHHHHHHHH
Q 007775 487 LYEKKGLYKEAIKAFRSALNIDPAH----VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM------NSSAWYNLGL 556 (590)
Q Consensus 487 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~------~~~~~~~l~~ 556 (590)
++...|++++|...+++++...|.. ...+..++.++...|+++ +|...+++++...+. ...++..+|.
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE--PAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 6889999999999999999877654 225678999999999999 999999999886542 1247888999
Q ss_pred HHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 557 FYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 557 ~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
++...|+ +++|...+++++.+.+.
T Consensus 302 ~~~~~g~---~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 302 LYWQAGR---KSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---HHHHHHHHHHHHHHhcc
Confidence 9999999 99999999999987664
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.85 E-value=4.4e-19 Score=164.06 Aligned_cols=232 Identities=8% Similarity=-0.032 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcc--CHHHHHHHHHHHHcccCCCcHHHHHHHHHHH----HHc---CCh
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARIL----SAQ---KRY 368 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~----~~~---g~~ 368 (590)
.++|+..+.+++ .++|.+..+|+..+.++...| ++++++..+.+++..+|++. .+|...+.++ ... +++
T Consensus 49 s~~aL~~t~~~L-~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y-~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGI-NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY-QIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHH-HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH-HHHHHHHHHHHHHHHhccccCCH
Confidence 468999999999 999999999999999999999 99999999999999999999 9999999999 766 789
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHh--HHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHH
Q 007775 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK--GAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEV 446 (590)
Q Consensus 369 ~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (590)
++++.+++++++.+| .+..+|...+.+....|.++ ++++.++++++.+ |.+..+
T Consensus 127 ~~EL~~~~~~l~~~p--kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d----------------------~~N~sA 182 (306)
T 3dra_A 127 YREFDILEAMLSSDP--KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD----------------------LKNNSA 182 (306)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC----------------------TTCHHH
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC----------------------CCCHHH
Confidence 999999999999999 89999999999999999999 9999999999998 666899
Q ss_pred HHHHHHHHHhcCC------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccC---CCChhhHH
Q 007775 447 WLDLAFIYINLSQ------WHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKE-AIKAFRSALNID---PAHVPSLI 516 (590)
Q Consensus 447 ~~~la~~~~~~g~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~ 516 (590)
|...+.++...++ ++++++++++++..+|.+..+|+.++.++...|+..+ ....+.+++.++ |.++.++.
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 262 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALE 262 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 9999999999887 9999999999999999999999999999999998655 455777777776 88899999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHh-hcCCCHHHHHHHHHH
Q 007775 517 STAVVLRKLSDQSNAVIRSFLMAALR-LDGMNSSAWYNLGLF 557 (590)
Q Consensus 517 ~l~~~~~~~g~~~l~~A~~~~~~a~~-~~p~~~~~~~~l~~~ 557 (590)
.++.++.+.|+.+ +|+++|+.+.+ .+|.....|...+..
T Consensus 263 ~la~~~~~~~~~~--~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 263 TLAKIYTQQKKYN--ESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHTTCHH--HHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHccCCHH--HHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 9999999999988 99999999997 799999999887654
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=2.6e-20 Score=195.39 Aligned_cols=188 Identities=14% Similarity=0.033 Sum_probs=175.0
Q ss_pred hhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH--------cccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 007775 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL--------KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (590)
Q Consensus 311 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 382 (590)
..+|.++.+++..+ ...|++++|+..+++++ +.+|++. .++..+|.++...|++++|+..|+++++.+
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV-ELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch-hHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 45788888887766 78999999999999999 8999999 999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHH
Q 007775 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHD 462 (590)
Q Consensus 383 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 462 (590)
| ++..+++.+|.++...|++++|+..|+++++.+ |.++.++..+|.++...|++++
T Consensus 464 p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------------P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 464 G--WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF----------------------PGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----------------------TTCSHHHHHHHHHHHHHTCCCT
T ss_pred c--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCChHHHHHHHHHHHHcCChHH
Confidence 9 889999999999999999999999999999998 5668999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCC
Q 007775 463 AEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSD 527 (590)
Q Consensus 463 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 527 (590)
+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|++..++.++|.++...++
T Consensus 520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999999999999999999999988776
No 79
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.7e-21 Score=185.19 Aligned_cols=326 Identities=13% Similarity=0.055 Sum_probs=170.7
Q ss_pred HHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 007775 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE 250 (590)
Q Consensus 171 ~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~ 250 (590)
+.+.|+++.|.+.+++. +++.+|..+|..+...|++++|++.|.++- ++..+...+.. ....|.+++
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~-------D~~~y~~V~~~-ae~~g~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYMEVVQA-ANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCC-------CHHHHHHHHHH-HHhCCCHHH
Confidence 44778889999999887 445799999999999999999999997642 23344444433 345788999
Q ss_pred HHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 007775 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ 330 (590)
Q Consensus 251 A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~ 330 (590)
|+.+++.+.+..++ + .+...++.+|.+.|+ +.++.+.++ +.+..+|..+|..+...
T Consensus 80 Ai~yl~~ark~~~~-~-----~i~~~Li~~Y~Klg~-----------l~e~e~f~~-------~pn~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 80 LVKYLQMARKKARE-S-----YVETELIFALAKTNR-----------LAELEEFIN-------GPNNAHIQQVGDRCYDE 135 (449)
T ss_dssp -----------------------------------C-----------HHHHTTTTT-------CC---------------
T ss_pred HHHHHHHHHHhCcc-c-----hhHHHHHHHHHHhCC-----------HHHHHHHHc-------CCcHHHHHHHHHHHHHc
Confidence 99999988885443 3 377788899999999 888776653 23446999999999999
Q ss_pred cCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHH
Q 007775 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (590)
Q Consensus 331 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 410 (590)
|+|++|..+|.++ ..|..++.++.+.|++++|++.++++ .++.+|...+.++...|+++.|..+
T Consensus 136 g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 136 KMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp -CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred CCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999977 47889999999999999999999998 3578899999999999999999766
Q ss_pred HHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007775 411 YTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEK 490 (590)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 490 (590)
...+. .. |. -...++..|.+.|++++|+.++++++.+++.....+..+|.+|.+
T Consensus 200 ~l~L~-~~----------------------ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 200 GLHIV-VH----------------------AD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TTTTT-TC----------------------HH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHH-hC----------------------Hh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 65422 22 32 244688899999999999999999999999999999999998876
Q ss_pred --cCCHHHHHHHHHHHhccCC-----CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhh------------cCCCHHHH
Q 007775 491 --KGLYKEAIKAFRSALNIDP-----AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRL------------DGMNSSAW 551 (590)
Q Consensus 491 --~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~------------~p~~~~~~ 551 (590)
.++..+.++.|...+.+.| +++..|..+..+|.+.++++ .|.......... .+.+.+.+
T Consensus 254 y~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d--~A~~tm~~h~~~a~~~~~f~~~~~kv~n~ely 331 (449)
T 1b89_A 254 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD--NAIITMMNHPTDAWKEGQFKDIITKVANVELY 331 (449)
T ss_dssp TCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH--HHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHH
T ss_pred cCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH--HHHHHHHhCChhhhhhHHHHHHHhchhHHHHH
Confidence 4578888888888888888 88899999999999999998 887755443222 56678888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHh--cccc
Q 007775 552 YNLGLFYKSQGTQSSKLEAAECFEAAA--SLEE 582 (590)
Q Consensus 552 ~~l~~~~~~~g~~~~~~~A~~~~~~al--~l~p 582 (590)
+.....|. +. ..+++..+..++ .++|
T Consensus 332 Ykai~fyl--~~---~p~~l~~ll~~l~~~ld~ 359 (449)
T 1b89_A 332 YRAIQFYL--EF---KPLLLNDLLMVLSPRLDH 359 (449)
T ss_dssp HHHHHHHH--HH---CGGGHHHHHHHHGGGCCH
T ss_pred HHHHHHHH--hc---CHHHHHHHHHHHHhccCc
Confidence 88777777 33 445666666666 4444
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=1.1e-19 Score=170.63 Aligned_cols=256 Identities=14% Similarity=0.002 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhh--chhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 007775 250 EGATFASRALECLGDGCDQMESTANCLLGISLSA--QSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY 327 (590)
Q Consensus 250 ~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~ 327 (590)
+|.+++.++-+..+.... .+ . .+.. .++ +++|+..|.++. .+|
T Consensus 3 ~a~~~~~~a~k~~~~~~~-----~~-~---~~~~~~~~~-----------~~~A~~~~~~a~---------------~~~ 47 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSG-----FM-K---LFSGSDSYK-----------FEEAADLCVQAA---------------TIY 47 (292)
T ss_dssp CHHHHHHHHHHHSSCCCT-----HH-H---HHSCCSHHH-----------HHHHHHHHHHHH---------------HHH
T ss_pred cHHHHHHHHHHHhCcCCC-----cc-h---hcCCCCCcc-----------HHHHHHHHHHHH---------------HHH
Confidence 567778888887765431 11 1 1121 235 889999888874 367
Q ss_pred HHccCHHHHHHHHHHHHcccCC-----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc----hHHHHHHHHHH
Q 007775 328 AEQRKLNAAHYYAKMLLKLEGG-----SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----GELLRTKAKVQ 398 (590)
Q Consensus 328 ~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~la~~~ 398 (590)
...|++++|+.+|++++.+.+. ....++..+|.+|...|++++|+.+|++++++.+...+ ..++..+|.+|
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 127 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8899999999999999987532 11278999999999999999999999999998763222 46888999999
Q ss_pred HHh-cCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 399 LVQ-GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 399 ~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
... |++++|+..|++++++.|... ..+....++..+|.++...|++++|+.+|++++.+.|++
T Consensus 128 ~~~lg~~~~A~~~~~~Al~~~~~~~----------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGEWYAQDQ----------------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHhhcCHHHHHHHHHHHHHHHHhCC----------------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 996 999999999999999986321 112235689999999999999999999999999999887
Q ss_pred HH-------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh-----HHHHHHHHH--HcCCCchHHHHHHHHHHHhh
Q 007775 478 AS-------KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS-----LISTAVVLR--KLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 478 ~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~--~~g~~~l~~A~~~~~~a~~~ 543 (590)
.. ++..+|.++...|++++|+..|+++++++|+.... +..++..+. ..++++ +|+..|++++.+
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~--~A~~~~~~~~~l 269 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS--EHCKEFDNFMRL 269 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH--HHHHHHTTSSCC
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH--HHHHHhccCCcc
Confidence 53 57899999999999999999999999999987653 445566554 345666 999999999888
Q ss_pred cCCCHHHHHHHHHHH
Q 007775 544 DGMNSSAWYNLGLFY 558 (590)
Q Consensus 544 ~p~~~~~~~~l~~~~ 558 (590)
+|....++..+-..+
T Consensus 270 ~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 270 DKWKITILNKIKESI 284 (292)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 887766666554444
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=6.4e-20 Score=169.48 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=175.8
Q ss_pred hhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC-CC
Q 007775 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGK-WE 386 (590)
Q Consensus 311 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~ 386 (590)
...|.++..++.+|..+...|++++|+..|+++++..|++ . .+++.+|.++...|++++|+..|+++++..|. +.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAA-DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 5578899999999999999999999999999999999998 6 89999999999999999999999999999873 34
Q ss_pred chHHHHHHHHHHHH--------hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcC
Q 007775 387 QGELLRTKAKVQLV--------QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLS 458 (590)
Q Consensus 387 ~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 458 (590)
...+++.+|.++.. .|++++|+..|+++++..|++.......... ....+.....+..+|.+|...|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~-----~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI-----RELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcc
Confidence 57889999999999 9999999999999999987653221100000 0000112233489999999999
Q ss_pred ChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCh---hhHHHHHHHH
Q 007775 459 QWHDAEICLSKSEAISSYS---ASKCHATGVLYEKK----------GLYKEAIKAFRSALNIDPAHV---PSLISTAVVL 522 (590)
Q Consensus 459 ~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~ 522 (590)
++++|+..|+++++..|++ +.+++.+|.++... |++++|+..|+++++..|+++ .+...++.++
T Consensus 163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 9999999999999999984 67899999999977 999999999999999999985 4455666666
Q ss_pred HHcCCCc
Q 007775 523 RKLSDQS 529 (590)
Q Consensus 523 ~~~g~~~ 529 (590)
...++++
T Consensus 243 ~~~~~~~ 249 (261)
T 3qky_A 243 QRLTELE 249 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6665544
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.85 E-value=2.8e-19 Score=174.91 Aligned_cols=241 Identities=14% Similarity=0.095 Sum_probs=201.5
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM------RDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 345 (590)
..++..|..+...|+ +++|+..|++++ ...+ ....+++.+|.+|...|++++|+.+++++++
T Consensus 102 ~~~~~~g~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 102 YSLFFRGMYEFDQKE-----------YVEAIGYYREAE-KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp HHHHHHHHHHHHTTC-----------HHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-----------HHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 467889999999999 999999999998 7632 2347899999999999999999999999997
Q ss_pred ccCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC----CchHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 007775 346 LEGGS------NLKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (590)
Q Consensus 346 ~~p~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 415 (590)
..+.. ...++..+|.++...|++++|+..++++++..+.. ....++..+|.++...|++++|+..|++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 65431 12578899999999999999999999999875311 235678899999999999999999999999
Q ss_pred HHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHH
Q 007775 416 AALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY-----SASKCHATGVLYEK 490 (590)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~~ 490 (590)
...+.. ..|..+.++..+|.++...|++++|+.++++++.+.+. ....+..++.++..
T Consensus 250 ~~~~~~-----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 250 KVSREK-----------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHHHHH-----------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred HHHHhh-----------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 975321 12556889999999999999999999999999998543 34456778888888
Q ss_pred cCC---HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 491 KGL---YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 491 ~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
.|+ +.+|+..+++. ...|.....+..+|.+|...|+++ +|..+|+++++..
T Consensus 313 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~--~A~~~~~~al~~~ 366 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFE--QAAAFYRKVLKAQ 366 (378)
T ss_dssp SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHH
Confidence 888 89999998873 334455678889999999999999 9999999998754
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=4e-20 Score=163.98 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=149.6
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
.+..+...|..+...|++++|+..|+++++.+|+++..+.... ........+.....+|.++...|++++|+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN------VDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHH------SCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhh------hcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566778999999999999999999999999854422111000 0000011122223399999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC
Q 007775 467 LSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~ 546 (590)
|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+.+.+.+...+.+++...|
T Consensus 77 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~- 155 (208)
T 3urz_A 77 YKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK- 155 (208)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999988776543367777777764333
Q ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 547 NSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
...+++.+|.++...|+ +++|+.+|+++++++|++
T Consensus 156 ~~~a~~~~g~~~~~~~~---~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 156 MQYARYRDGLSKLFTTR---YEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHT---HHHHHHHHHHHTTTSCCH
T ss_pred hhHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCH
Confidence 23478889999999999 999999999999999975
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=9.3e-21 Score=158.13 Aligned_cols=147 Identities=11% Similarity=0.132 Sum_probs=134.2
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
.||.++...|++++|+..+++++... |..+..++.+|.+|...|++++|+.+|+++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~----------------------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP----------------------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN 59 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH----------------------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC----------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 37888889999999999999998876 56688899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHH-HHHHHhhcCCCHHHH
Q 007775 473 ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSF-LMAALRLDGMNSSAW 551 (590)
Q Consensus 473 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~-~~~a~~~~p~~~~~~ 551 (590)
++|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++...|+++ +|... ++++++++|+++.++
T Consensus 60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD--GRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS--SHHHHHHHHHHHHSTTCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHhCcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 76654 699999999999999
Q ss_pred HHHHHHHHHhCC
Q 007775 552 YNLGLFYKSQGT 563 (590)
Q Consensus 552 ~~l~~~~~~~g~ 563 (590)
..++.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999999998886
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.83 E-value=2.1e-18 Score=168.57 Aligned_cols=269 Identities=16% Similarity=0.070 Sum_probs=206.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCCh------H
Q 007775 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL------S 318 (590)
Q Consensus 245 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~------~ 318 (590)
.|++++|+..+++++...|.........++..+|.++...|+ +++|...+++++ ...|... .
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al-~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE-----------LTRSLALMQQTE-QMARQHDVWHYALW 94 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHH-HHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc-----------HHHHHHHHHHHH-HHHHhcCcHHHHHH
Confidence 345555555555555555443322233477888888999999 999999999988 6644322 3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcccC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC---c
Q 007775 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--------GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE---Q 387 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~ 387 (590)
++..+|.++...|++++|+.++++++...+ ... .++..+|.++...|++++|..++++++...+... .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE-FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 467899999999999999999999987652 223 5677899999999999999999999998876322 3
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHH--HHHHHHHHHhcCChHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEV--WLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~ 465 (590)
..++..+|.++...|++++|...+++++...+.. ..+..... ...++.++...|++++|..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 236 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-----------------KYHSDWISNANKVRVIYWQMTGDKAAAAN 236 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-----------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----------------CcchhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4578889999999999999999999999885321 00111111 2245566889999999999
Q ss_pred HHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------ChhhHHHHHHHHHHcCCCchHHHHH
Q 007775 466 CLSKSEAISSYS----ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA------HVPSLISTAVVLRKLSDQSNAVIRS 535 (590)
Q Consensus 466 ~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~l~~A~~ 535 (590)
++++++...|.. ...+..+|.++...|++++|...+++++...+. ...++..+|.++...|+++ +|..
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~ 314 (373)
T 1hz4_A 237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS--DAQR 314 (373)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--HHHH
T ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH--HHHH
Confidence 999999877653 235678999999999999999999999876432 1347888999999999998 9999
Q ss_pred HHHHHHhhcC
Q 007775 536 FLMAALRLDG 545 (590)
Q Consensus 536 ~~~~a~~~~p 545 (590)
.+++++...+
T Consensus 315 ~l~~al~~~~ 324 (373)
T 1hz4_A 315 VLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998654
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=2.5e-20 Score=195.60 Aligned_cols=188 Identities=13% Similarity=0.009 Sum_probs=174.2
Q ss_pred cccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH--------hccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 007775 345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL--------DQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (590)
Q Consensus 345 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 416 (590)
..+|+++ .+++..+ ...|++++|++.+++++ +..| ++..++..+|.++...|++++|+..|+++++
T Consensus 388 ~~~p~~~-~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 388 LVDPTDV-AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCCTTST-THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCc-chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 5678887 7777666 78899999999999999 7777 8889999999999999999999999999999
Q ss_pred HHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 007775 417 ALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKE 496 (590)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 496 (590)
.+ |.+..+|+.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++
T Consensus 462 ~~----------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 462 RV----------------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp HH----------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred cC----------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence 98 66799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 497 AIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 497 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
+..|+++++++|+++.+++++|.++...|+++ +|+..|+++++++|++..+++++|.++...|+
T Consensus 520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRV--GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH--HHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999 99999999999999999999999999977654
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.83 E-value=1.5e-19 Score=157.37 Aligned_cols=175 Identities=20% Similarity=0.216 Sum_probs=165.9
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
.....+..+|.++...|++++|+..++++++.. |.+..++..+|.++...|++++|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~A~~ 63 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD----------------------AFDVDVALHLGIAYVKTGAVDRGTE 63 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT----------------------SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------ccChHHHHHHHHHHHHcCCHHHHHH
Confidence 346778899999999999999999999988776 5568899999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
+++++++..|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+++ +|+.+++++++..|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFD--EAIDSFKIALGLRP 141 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHH--HHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCCC
Q 007775 546 MNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 546 ~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~~ 587 (590)
.++.++..+|.++...|+ +++|..++++++++.|+++..
T Consensus 142 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGR---HEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHCCCGG
T ss_pred cchHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCchhh
Confidence 999999999999999999 999999999999999988753
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.83 E-value=9.3e-20 Score=170.57 Aligned_cols=235 Identities=17% Similarity=0.129 Sum_probs=186.1
Q ss_pred HccCHHHHHHHHHHHHcc-------c-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc------CCCCchHHHHHH
Q 007775 329 EQRKLNAAHYYAKMLLKL-------E-GGSNLKGWLLMARILSAQKRYEDAETILNAALDQT------GKWEQGELLRTK 394 (590)
Q Consensus 329 ~~g~~~~A~~~~~~~l~~-------~-p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~~~l 394 (590)
..|++++|+.+|+++++. + |... .++..+|.++...|++++|+.+++++++.. ..+....++..+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVA-TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777777653 2 4445 889999999999999999999999999873 223567889999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI- 473 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~- 473 (590)
|.++...|++++|+..|++++...... .....|....++..+|.++...|++++|+.++++++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKV--------------LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH--------------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999885321 11223677889999999999999999999999999998
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---------CCCChhhHHHHHHHHHHcCCCc----hHHH
Q 007775 474 -------SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI---------DPAHVPSLISTAVVLRKLSDQS----NAVI 533 (590)
Q Consensus 474 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~----l~~A 533 (590)
.|....++..+|.++...|++++|+..++++++. .+.....+..++......+... +.++
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 6666788999999999999999999999999975 5566777888888877766655 1122
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccc
Q 007775 534 RSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 534 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~ 581 (590)
...++......|..+.++..+|.+|...|+ +++|..+|++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 238 GSWYKACKVDSPTVNTTLRSLGALYRRQGK---LEAAHTLEDCASRNR 282 (283)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhh
Confidence 333333333445667789999999999999 999999999999864
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=2.5e-18 Score=154.62 Aligned_cols=193 Identities=10% Similarity=-0.048 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCch---HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG---ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 429 (590)
..++.+|..+...|++++|+..|+++++..| .+. .+++.+|.++...|++++|+..|+++++.+|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~-------- 74 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------
Confidence 4556666666666666666666666666665 442 456666666666666666666666666665432
Q ss_pred cccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 430 RFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
+....+++.+|.++...|.. ....+..++..+...|++++|+..|+++++..|
T Consensus 75 -----------~~~~~a~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 75 -----------PNIDYVMYMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp -----------TTHHHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCT
T ss_pred -----------CcHHHHHHHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 23344566666665543210 001111222223335566666666666666666
Q ss_pred CChhhH-----------------HHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHhCCCCchHH
Q 007775 510 AHVPSL-----------------ISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS---SAWYNLGLFYKSQGTQSSKLE 569 (590)
Q Consensus 510 ~~~~~~-----------------~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~g~~~~~~~ 569 (590)
+++.++ ..+|.++...|+++ +|+..|+++++..|+++ .++..+|.++..+|+ +++
T Consensus 128 ~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~---~~~ 202 (225)
T 2yhc_A 128 NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV--AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM---NAQ 202 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC---cHH
Confidence 665443 57899999999999 99999999999999986 679999999999999 999
Q ss_pred HHHHHHHHhccccCCCCC
Q 007775 570 AAECFEAAASLEETAPVE 587 (590)
Q Consensus 570 A~~~~~~al~l~p~~~~~ 587 (590)
|++.++++....|++...
T Consensus 203 A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 203 AEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHhhCCCchhh
Confidence 999999999999987654
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=1.3e-18 Score=151.44 Aligned_cols=170 Identities=13% Similarity=0.119 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~ 397 (590)
..+..+|..+...|++++|+..++++++..|.+. .++..+|.++...|++++|+..++++++..| .+..++..+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV-DVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Confidence 4566677777777777777777777777777766 7777777777777777777777777777766 566667777777
Q ss_pred HHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007775 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS 477 (590)
Q Consensus 398 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 477 (590)
+...|++++|+..+++++... |.++.++..+|.++...|++++|+.++++++...|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN----------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcCHHHHHHHHHHHHhcC----------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 777777777777777777665 3445666777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCh
Q 007775 478 ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHV 512 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 512 (590)
+.++..+|.++...|++++|+..++++++..|++.
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 77777777777777777777777777766666554
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=7.5e-20 Score=152.62 Aligned_cols=145 Identities=10% Similarity=0.004 Sum_probs=73.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccc
Q 007775 358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSAN 437 (590)
Q Consensus 358 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 437 (590)
||.++...|++++|+..+++++...| +++..++.+|.+|...|++++|+..|+++++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------------------- 61 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------------------- 61 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Confidence 34444445555555555555555444 444444555555555555555555555555554
Q ss_pred cccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCChhhHH
Q 007775 438 HARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKA-FRSALNIDPAHVPSLI 516 (590)
Q Consensus 438 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~ 516 (590)
|.++.+|..+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++.
T Consensus 62 ---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 62 ---ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 333555555555555555555555555555555555555555555555555555444433 3555555555555555
Q ss_pred HHHHHHHHcC
Q 007775 517 STAVVLRKLS 526 (590)
Q Consensus 517 ~l~~~~~~~g 526 (590)
.++.++...|
T Consensus 139 l~~~ll~~~G 148 (150)
T 4ga2_A 139 LKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHhC
Confidence 5555554444
No 92
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.80 E-value=4.1e-17 Score=151.48 Aligned_cols=228 Identities=10% Similarity=0.042 Sum_probs=186.1
Q ss_pred HHccCHH-HHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 007775 328 AEQRKLN-AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR----------YEDAETILNAALDQTGKWEQGELLRTKAK 396 (590)
Q Consensus 328 ~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~~~~~la~ 396 (590)
...|++. +|+.++.+++..+|++. .+|...+.++...+. +++++.+++.++..+| .+..+|...+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~y-taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P--Kny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFA-TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH-HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 3455554 78999999999999988 899999888887765 6888999999999888 88889999999
Q ss_pred HHHHhcC--HhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhc
Q 007775 397 VQLVQGQ--LKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQ-WHDAEICLSKSEAI 473 (590)
Q Consensus 397 ~~~~~g~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~ 473 (590)
++...|+ +++++..+.++++.+ |.+..+|...+.+....|. +++++.++.+++..
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d----------------------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD----------------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 9988884 889999999999987 5668899999999888888 58999999999999
Q ss_pred CCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHc-CCC--------ch
Q 007775 474 SSYSASKCHATGVLYEKK--------------GLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKL-SDQ--------SN 530 (590)
Q Consensus 474 ~p~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~--------~l 530 (590)
+|.+..+|..++.++... +.++++++++.+++..+|++..+|+.+..++... |.. .+
T Consensus 175 ~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 175 NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 999999999999888877 5688999999999999999999998776666655 211 13
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHhccccC
Q 007775 531 AVIRSFLMAALRLDGMNSSAWYNLGLFYKS---QGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 531 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~---~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
+++++.++++++..|++...+..++.+... .|. .++...++.+.++++|-
T Consensus 255 ~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 255 QSELESCKELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTT---HHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhhCcccchHHHHHHHHHHhhccccc---HHHHHHHHHHHHHhCcc
Confidence 489999999999999886555444443332 456 88899999999999885
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=1.7e-18 Score=153.45 Aligned_cols=195 Identities=11% Similarity=-0.028 Sum_probs=150.8
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHH
Q 007775 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (590)
Q Consensus 316 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la 395 (590)
+++.++..|..+...|++++|+..|+++++.+|+++ .+++..+. .+. . ...+.+...+|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~-----~~~-------------~--~~~~~~~~~lg 61 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT-EMYYWTNV-----DKN-------------S--EISSKLATELA 61 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH-HHHHHHHS-----CTT-------------S--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHhhh-----cch-------------h--hhhHHHHHHHH
Confidence 455667777777777777777777777777777766 55544321 000 0 01233445699
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007775 396 KVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISS 475 (590)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 475 (590)
.++...|++++|+..|+++++.+ |.++.++..+|.++...|++++|+.+|+++++++|
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKA----------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998 66699999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 476 YSASKCHATGVLYEKKGL--YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
+++.+++.+|.++...|+ .+.+...+++++...|. ..+++.+|.++...|+++ +|+..|+++++++|+. .+...
T Consensus 120 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~--~A~~~~~~al~l~P~~-~~~~~ 195 (208)
T 3urz_A 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYE--KARNSLQKVILRFPST-EAQKT 195 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHH--HHHHHHHHHTTTSCCH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCH-HHHHH
Confidence 999999999999987764 45667788877654332 346788999999999999 9999999999999974 44444
Q ss_pred HHHH
Q 007775 554 LGLF 557 (590)
Q Consensus 554 l~~~ 557 (590)
+..+
T Consensus 196 l~~i 199 (208)
T 3urz_A 196 LDKI 199 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=2.9e-18 Score=160.31 Aligned_cols=229 Identities=17% Similarity=0.135 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccc--------CCCcHHHHHHHHHHHHHcCCh
Q 007775 298 QAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE--------GGSNLKGWLLMARILSAQKRY 368 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~la~~~~~~g~~ 368 (590)
+++|++.+++.. ..+ |....++..+|.++...|++++|+.+++++++.. |... .++..+|.++...|++
T Consensus 24 ~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 101 (283)
T 3edt_B 24 CKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVA-ATLNNLAVLYGKRGKY 101 (283)
T ss_dssp HHHHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH-HHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHHhccH
Confidence 555555555554 323 5567889999999999999999999999999773 4445 7899999999999999
Q ss_pred HHHHHHHHHHHhcc-----C-CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccch
Q 007775 369 EDAETILNAALDQT-----G-KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSL 442 (590)
Q Consensus 369 ~~A~~~~~~a~~~~-----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (590)
++|+.++++++... + .+....++..+|.++...|++++|+..++++++..... .....|.
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~ 167 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--------------LGPDDPN 167 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--------------SCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------------cCCCCHH
Confidence 99999999999883 1 23668899999999999999999999999999984211 1122366
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHhcc
Q 007775 443 ELEVWLDLAFIYINLSQWHDAEICLSKSEAI---------SSYSASKCHATGVLYEKKGL------YKEAIKAFRSALNI 507 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---------~p~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~ 507 (590)
...++..+|.++...|++++|+.++++++.. .+.....+..++..+...+. +.++...++.....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 7889999999999999999999999999986 44556677777777766443 55566666666556
Q ss_pred CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 508 DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 508 ~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
.|..+.++..+|.++...|+++ +|+.+|+++++..
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~ 282 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLE--AAHTLEDCASRNR 282 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhh
Confidence 6777889999999999999999 9999999998753
No 95
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4.2e-19 Score=168.91 Aligned_cols=292 Identities=14% Similarity=0.163 Sum_probs=153.7
Q ss_pred HHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhc
Q 007775 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (590)
Q Consensus 205 ~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 284 (590)
....|+.++|.++++++- .| .++..++..+ ...+++++|+..|.++ + +. ..+..++..+...
T Consensus 13 l~~~~~ld~A~~fae~~~----~~---~vWs~La~A~-l~~g~~~eAIdsfika----~-D~-----~~y~~V~~~ae~~ 74 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN----EP---AVWSQLAKAQ-LQKGMVKEAIDSYIKA----D-DP-----SSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC----Ch---HHHHHHHHHH-HHcCCHHHHHHHHHcC----C-CH-----HHHHHHHHHHHhC
Confidence 346788999999999883 12 3555666443 3566888999999764 2 22 3778888888889
Q ss_pred hhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHH
Q 007775 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (590)
Q Consensus 285 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 364 (590)
|+ +++|+.+++.+. +. ..++.+...++.+|.+.|++.++.++++ .|+ . .+|..+|..+..
T Consensus 75 g~-----------~EeAi~yl~~ar-k~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~-~a~~~IGd~~~~ 134 (449)
T 1b89_A 75 GN-----------WEELVKYLQMAR-KK-ARESYVETELIFALAKTNRLAELEEFIN-----GPN-N-AHIQQVGDRCYD 134 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT-----CC----------------
T ss_pred CC-----------HHHHHHHHHHHH-Hh-CccchhHHHHHHHHHHhCCHHHHHHHHc-----CCc-H-HHHHHHHHHHHH
Confidence 99 999999999888 54 3447788899999999999999988775 244 4 699999999999
Q ss_pred cCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHH
Q 007775 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLEL 444 (590)
Q Consensus 365 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (590)
.|+|++|..+|.++ ..|..+|.++.++|++++|++.++++. + +
T Consensus 135 ~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~-------------------------~ 177 (449)
T 1b89_A 135 EKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN--S-------------------------T 177 (449)
T ss_dssp --CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHT--C-------------------------H
T ss_pred cCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHcC--C-------------------------c
Confidence 99999999999976 247799999999999999999999882 2 7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
.+|..++.++...|+++.|..+... +... ++-...++.+|.+.|++++|+.++++++.+++.+..++..+|.+|.+
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 8999999999999999999877765 3344 44455788999999999999999999999999999999999999987
Q ss_pred cCCCchHHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 007775 525 LSDQSNAVIRSFLMAALRLDG-----MNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAA 578 (590)
Q Consensus 525 ~g~~~l~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al 578 (590)
-.--.+.+.++.|...+.+.| .++..|..+..+|...++ ++.|+..+-...
T Consensus 254 y~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e---~d~A~~tm~~h~ 309 (449)
T 1b89_A 254 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE---YDNAIITMMNHP 309 (449)
T ss_dssp TCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTC---HHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHhCC
Confidence 654334488888888888888 788899999999999999 999998766543
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.78 E-value=8.6e-17 Score=149.30 Aligned_cols=234 Identities=9% Similarity=0.052 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccC----------HHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCC
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK----------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 367 (590)
.++|+..+.+++ ..+|.+..+|+..+.+....+. +++++.++..++..+|.+. .+|...+.++...++
T Consensus 46 s~eaL~~t~~~L-~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny-~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 46 DESVLELTSQIL-GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-GTWHHRCWLLSRLPE 123 (331)
T ss_dssp SHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHH-HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHhccCc
Confidence 458999999999 9999999999999999988776 6899999999999999999 999999999999994
Q ss_pred --hHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHH
Q 007775 368 --YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ-LKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLEL 444 (590)
Q Consensus 368 --~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (590)
+++++.++.++++.+| .+..+|...+.+....|. ++++++.+.++++.+ |.+.
T Consensus 124 ~~~~~EL~~~~k~l~~dp--rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~----------------------p~N~ 179 (331)
T 3dss_A 124 PNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN----------------------FSNY 179 (331)
T ss_dssp CCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----------------------SCCH
T ss_pred ccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC----------------------CCCH
Confidence 8999999999999999 889999999999999999 699999999999998 6678
Q ss_pred HHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCHHHHHH
Q 007775 445 EVWLDLAFIYINL--------------SQWHDAEICLSKSEAISSYSASKCHATGVLYEKK-----------GLYKEAIK 499 (590)
Q Consensus 445 ~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~ 499 (590)
.+|..++.++... +.++++++++.+++..+|++..+|+.+..++... +.++++++
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 9999999998877 5689999999999999999999998776666555 46899999
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHH---cCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 500 AFRSALNIDPAHVPSLISTAVVLRK---LSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 500 ~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
.+++++++.|++..++..++.+... .|..+ +...++.++++++|....-|..++.-+.
T Consensus 260 ~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 260 SCKELQELEPENKWCLLTIILLMRALDPLLYEK--ETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHH--HHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhCcccchHHHHHHHHHHhhcccccHH--HHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 9999999999986555555444332 45555 8999999999999998887777765443
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=5.2e-18 Score=136.41 Aligned_cols=117 Identities=13% Similarity=0.071 Sum_probs=111.9
Q ss_pred cchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHH
Q 007775 440 RSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTA 519 (590)
Q Consensus 440 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 519 (590)
.|..+..+..+|..+.+.|++++|+..|+++++++|.++.+|..+|.++...|++++|+..|+++++++|+++.+|..+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 520 VVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 520 ~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
.++..+|+++ +|+..|+++++++|+++.++..++.++
T Consensus 89 ~~~~~~~~~~--~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWS--KAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHH--HHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999 999999999999999999999998764
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=3e-17 Score=147.55 Aligned_cols=193 Identities=9% Similarity=-0.024 Sum_probs=160.1
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc-hHHHH
Q 007775 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-GELLR 392 (590)
Q Consensus 316 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~ 392 (590)
++..++.+|..+...|++++|+..|+++++..|.++ ..+++.+|.++...|++++|+..|+++++..|.... ..+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 567899999999999999999999999999998864 268999999999999999999999999999983222 34788
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
.+|.++...|.. . ...+..++..+...|++++|+..|+++++
T Consensus 83 ~~g~~~~~~~~~-----~---------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 83 MRGLTNMALDDS-----A---------------------------------LQGFFGVDRSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp HHHHHHHHHHC----------------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhh-----h---------------------------------hhhhhccchhhcCcHHHHHHHHHHHHHHH
Confidence 899998876632 0 22345567777889999999999999999
Q ss_pred cCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHHcCCCchHH
Q 007775 473 ISSYSASKC-----------------HATGVLYEKKGLYKEAIKAFRSALNIDPAHV---PSLISTAVVLRKLSDQSNAV 532 (590)
Q Consensus 473 ~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~l~~ 532 (590)
..|+++.++ ..+|.++...|++++|+..|+++++..|+++ .++..+|.++.++|+++ +
T Consensus 125 ~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~--~ 202 (225)
T 2yhc_A 125 GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA--Q 202 (225)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH--H
T ss_pred HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH--H
Confidence 999997654 5789999999999999999999999999986 67999999999999999 9
Q ss_pred HHHHHHHHHhhcCCCH
Q 007775 533 IRSFLMAALRLDGMNS 548 (590)
Q Consensus 533 A~~~~~~a~~~~p~~~ 548 (590)
|+..++++....|++.
T Consensus 203 A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 203 AEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHhhCCCch
Confidence 9999999999888764
No 99
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.77 E-value=2.1e-15 Score=155.08 Aligned_cols=366 Identities=9% Similarity=-0.049 Sum_probs=268.5
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCC---HHHHHHH
Q 007775 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL---AEEGATF 254 (590)
Q Consensus 178 ~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~---~~~A~~~ 254 (590)
......|++.+..+|.+...|..++......++++.+..+|++++ ...|.....+...+.... ..+. .+.+..+
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL--~~fP~~~~lW~~Yi~~E~-~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLH--DRFPLMANIWCMRLSLEF-DKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-TC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHH-hhCCcchHHHHHHH
Confidence 345667888999999999999999999999999999999999999 688888888877775544 3445 8899999
Q ss_pred HHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHH--
Q 007775 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST----NMRDLSILYRLSLEYA-- 328 (590)
Q Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~p~~~~~~~~la~~~~-- 328 (590)
|++++...|.++.. ..|..........+...... ....+.....|++++ .. ++.+..+|........
T Consensus 126 feRal~~~~~~~sv---~LW~~Yl~f~~~~~~~~~~~---~~~r~~vr~~FErAl-~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 126 LARCLSKELGNNDL---SLWLSYITYVRKKNDIITGG---EEARNIVIQAFQVVV-DKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHTCSSSCCCCH---HHHHHHHHHHHHHSCSTTTH---HHHHHHHHHHHHHHH-HHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCH---HHHHHHHHHHHHhccccccc---chhHHHHHHHHHHHH-HHhCcccccchHHHHHHHHHHHhc
Confidence 99999988532221 24444332222222210000 011345567788877 53 5666677766554432
Q ss_pred -------HccCHHHHHHHHHHHHcccCCC-cHHHHHHHHH-------------------------H-H------------
Q 007775 329 -------EQRKLNAAHYYAKMLLKLEGGS-NLKGWLLMAR-------------------------I-L------------ 362 (590)
Q Consensus 329 -------~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~la~-------------------------~-~------------ 362 (590)
.+++.+.+..+|++++.. |.. ....|..... . +
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 345677888888888864 322 1011100000 0 0
Q ss_pred ---------------------------------HHcCC---------hHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Q 007775 363 ---------------------------------SAQKR---------YEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (590)
Q Consensus 363 ---------------------------------~~~g~---------~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~ 400 (590)
+...+ .+.....|++++...| ..+.+|...+..+..
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p--~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC--FAPEIWFNMANYQGE 355 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHh
Confidence 00000 1223456888888877 678888889988888
Q ss_pred hcCHhHHH-HHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----
Q 007775 401 QGQLKGAV-ETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAIS----- 474 (590)
Q Consensus 401 ~g~~~~A~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----- 474 (590)
.|+.++|. .+|++++... |.+...|...+......|++++|..+|++++...
T Consensus 356 ~~~~~~a~r~il~rAi~~~----------------------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCI----------------------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 88888886 9999998876 5557889999999999999999999999998752
Q ss_pred ------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCChhhHHHHHHHHHHcCC-CchHHHHH
Q 007775 475 ------SY-----------SASKCHATGVLYEKKGLYKEAIKAFRSALNI-DPAHVPSLISTAVVLRKLSD-QSNAVIRS 535 (590)
Q Consensus 475 ------p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-~~l~~A~~ 535 (590)
|. ...+|...+.+..+.|..+.|...|.++++. .+....+|...+.+....++ .+ .|..
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e--~Ar~ 491 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTK--TACK 491 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCH--HHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHH--HHHH
Confidence 43 3457888899999999999999999999987 44456677777777777655 77 9999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 536 FLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 536 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
+|+++++..|+++..|...+......|+ .+.|..+|++++...|+
T Consensus 492 ife~~Lk~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 492 VLELGLKYFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSS
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999 99999999999998874
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.76 E-value=4.5e-18 Score=146.44 Aligned_cols=165 Identities=15% Similarity=0.066 Sum_probs=145.5
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
....+..+|..+...|++++|+..|+++++.+ |.++.++..+|.++...|++++|+..
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------P~~~~a~~~la~~~~~~g~~~~A~~~ 62 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDEL----------------------QSRGDVKLAKADCLLETKQFELAQEL 62 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH----------------------HTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34567789999999999999999999999998 56689999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 467 LSKSEAISSYSASKCHATGVLYE-KKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
+++++...| ++..+..++.+.. ..+...+|+..++++++.+|+++.+++.+|.++...|+++ +|+..|+++++.+|
T Consensus 63 ~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 63 LATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE--EALELLWNILKVNL 139 (176)
T ss_dssp HTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTCT
T ss_pred HHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH--HHHHHHHHHHHhCc
Confidence 999999999 8877766665533 3334456899999999999999999999999999999999 99999999999998
Q ss_pred CC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 546 MN--SSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 546 ~~--~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
+. +.++..+|.++...|+ .++|+..|++++.
T Consensus 140 ~~~~~~a~~~l~~~~~~~g~---~~~A~~~y~~al~ 172 (176)
T 2r5s_A 140 GAQDGEVKKTFMDILSALGQ---GNAIASKYRRQLY 172 (176)
T ss_dssp TTTTTHHHHHHHHHHHHHCS---SCHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhCC---CCcHHHHHHHHHH
Confidence 75 6699999999999999 9999999999875
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=4.5e-19 Score=146.70 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=96.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 465 ICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 465 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|.++|.++...|+++ +|+..|+++++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~--~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ--QAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHH--HHHHHHHHHHhhC
Confidence 34556677888888888888888888888888888888888888888888888888888888888 8888888888888
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 545 GMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 545 p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
|+++.+|+++|.+|..+|+ +++|+.+|++++++.|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888 8888888888888887654
No 102
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=6.9e-17 Score=150.44 Aligned_cols=232 Identities=13% Similarity=0.073 Sum_probs=195.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~ 401 (590)
+..+....+..++|+.++.+++..+|++. .+|...+.++...| .+++++..+++++..+| .+..+|+..+.++...
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~y-taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHY-TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHh
Confidence 33333444556789999999999999999 99999999999999 59999999999999998 8899999999999988
Q ss_pred -c-CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChH--------HHHHHHHHHH
Q 007775 402 -G-QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWH--------DAEICLSKSE 471 (590)
Q Consensus 402 -g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a~ 471 (590)
+ +++++++.+.++++.+ |.+..+|...+.++...|.++ ++++++++++
T Consensus 137 ~~~~~~~EL~~~~k~L~~d----------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD----------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC----------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 7 8999999999999887 566889999999998888888 9999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc---------------
Q 007775 472 AISSYSASKCHATGVLYEKKGL-------YKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS--------------- 529 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--------------- 529 (590)
+.+|.+..+|..++.++...++ ++++++++.+++..+|++..+|+.+..++.+.|+..
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence 9999999999999999999887 799999999999999999999999999999988751
Q ss_pred ---hHHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHh-cccc
Q 007775 530 ---NAVIRSFLMAALRLD------GMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAA-SLEE 582 (590)
Q Consensus 530 ---l~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al-~l~p 582 (590)
+.+-.......+... +.++.++..|+.+|...|+ .++|.++++... +.+|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~---~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR---VDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCG
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhhCh
Confidence 012222222222222 5678899999999999999 999999999986 5565
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.75 E-value=1.6e-17 Score=157.10 Aligned_cols=227 Identities=10% Similarity=0.016 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-ccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 007775 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (590)
Q Consensus 296 ~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 374 (590)
+.+++|..+++++. +..+.. ++. .+++++|..+|.++ +.++...|++++|+..
T Consensus 5 ~~~~eA~~~~~~a~-k~~~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 5 QKISEAHEHIAKAE-KYLKTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHH-HHHCCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHH-HHcccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 45778888888887 554432 112 57888888877765 5678889999999999
Q ss_pred HHHHHhccCCCC----chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHH
Q 007775 375 LNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDL 450 (590)
Q Consensus 375 ~~~a~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (590)
|.++++..+... ...++..+|.+|..+|++++|+..|++++++.+ ...+......++..+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~----------------~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV----------------ENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH----------------TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----------------HcCCHHHHHHHHHHH
Confidence 999998864222 256888999999999999999999999999973 333333346789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCh------hhHHHH
Q 007775 451 AFIYINLSQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHV------PSLIST 518 (590)
Q Consensus 451 a~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l 518 (590)
|.+|.. |++++|+.+|++++.+.|.. ..++..+|.++..+|++++|+.+|++++.+.|++. .++..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 999998 99999999999999987654 56789999999999999999999999999876542 377888
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcCCCHH-----HHHHHHHHHHHhCCCCchHHHHH
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDGMNSS-----AWYNLGLFYKSQGTQSSKLEAAE 572 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~-----~~~~l~~~~~~~g~~~~~~~A~~ 572 (590)
|.++...|+++ +|+..|++++ .+|.... ....++..+ ..|+ .+.+..
T Consensus 202 g~~~~~~g~~~--~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d---~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYV--AAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQD---EEQLLR 253 (307)
T ss_dssp HHHHHHTTCHH--HHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTC---HHHHHH
T ss_pred HHHHHHcCCHH--HHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcC---HHHHHH
Confidence 99999999998 9999999999 9997643 234455555 5677 655444
No 104
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.75 E-value=4.1e-16 Score=145.25 Aligned_cols=232 Identities=9% Similarity=-0.062 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHc-C-ChHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-K-RYEDAETI 374 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~-g-~~~~A~~~ 374 (590)
.++|+..+.+++ ..+|.+..+|+..+.++...| .+++++..+.+++..+|++. .+|...+.++... + ++++++++
T Consensus 70 se~AL~lt~~~L-~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny-~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIV-RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY-QVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHH-HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhcCCChHHHHHH
Confidence 568999999999 999999999999999999999 59999999999999999999 9999999999998 8 99999999
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHHhcCHh--------HHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHH
Q 007775 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLK--------GAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEV 446 (590)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (590)
+.++++.+| .+..+|...+.+....|.++ ++++.++++++.+ |.+..+
T Consensus 148 ~~k~L~~dp--kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d----------------------p~N~SA 203 (349)
T 3q7a_A 148 IHGSLLPDP--KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD----------------------GRNNSA 203 (349)
T ss_dssp HHHHTSSCT--TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC----------------------TTCHHH
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC----------------------CCCHHH
Confidence 999999999 88999999999999999888 9999999999998 666999
Q ss_pred HHHHHHHHHhcCC-------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--------------------HHHHH
Q 007775 447 WLDLAFIYINLSQ-------WHDAEICLSKSEAISSYSASKCHATGVLYEKKGLY--------------------KEAIK 499 (590)
Q Consensus 447 ~~~la~~~~~~g~-------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~--------------------~~A~~ 499 (590)
|...+.++...++ ++++++++++++..+|++..+|+.+..++...|+. .+-..
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEA 283 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------------
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHH
Confidence 9999999999887 79999999999999999999999999998887764 22233
Q ss_pred HHHHHhccC------CCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH-hhcCCCHHHHHHHHHH
Q 007775 500 AFRSALNID------PAHVPSLISTAVVLRKLSDQSNAVIRSFLMAAL-RLDGMNSSAWYNLGLF 557 (590)
Q Consensus 500 ~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~-~~~p~~~~~~~~l~~~ 557 (590)
.....+... +..+.++..++.+|...|+.+ +|.+.++.+. +.+|-....|...+..
T Consensus 284 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~--~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 284 FGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD--DAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp --CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 333333322 466788999999999999988 9999999987 6789888888776654
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.75 E-value=1.3e-17 Score=143.46 Aligned_cols=163 Identities=16% Similarity=0.069 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY 432 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 432 (590)
..+..+|..+...|++++|+..|+++++.+| +++.++..+|.++...|++++|+..|++++...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-------------- 70 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLEY-------------- 70 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--------------
Confidence 3444445555555555555555555555544 444455555555555555555555555444443
Q ss_pred ccccccccchHHHHHHHHHHHH-HhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007775 433 KGSANHARSLELEVWLDLAFIY-INLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH 511 (590)
Q Consensus 433 ~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 511 (590)
| ++..+..++.+. ...++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.
T Consensus 71 --------p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 71 --------Q-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp --------C-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred --------C-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 2 122222222221 122233346777777777777777777777777777777777777777777777765
Q ss_pred --hhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 512 --VPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 512 --~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
+.++..++.++...|+.+ +|+..|++++.
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~--~A~~~y~~al~ 172 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGN--AIASKYRRQLY 172 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSC--HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCC--cHHHHHHHHHH
Confidence 447777777777777777 77777777654
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.75 E-value=4.5e-17 Score=153.94 Aligned_cols=191 Identities=15% Similarity=0.121 Sum_probs=149.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCch----HH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG----EL 390 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~ 390 (590)
+...+.+|...|++++|+..|.+++.+.+.. ...++..+|.+|...|++++|+.+|++++++.+...+. .+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444667888999999999999998776432 12578889999999999999999999999998755553 47
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
+..+|.+|.. |++++|+.+|++++++.+ ..........++..+|.++...|++++|+.+|+++
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~----------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFE----------------NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHH----------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHH----------------hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7889999988 999999999999999874 11222233678899999999999999999999999
Q ss_pred HhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh-----HHHHHHHHHHcCCCc
Q 007775 471 EAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS-----LISTAVVLRKLSDQS 529 (590)
Q Consensus 471 ~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~~~g~~~ 529 (590)
+.+.|.+ ..++..+|.++...|++++|+..|++++ ++|+.... +..++..+ ..|+.+
T Consensus 182 l~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~ 249 (307)
T 2ifu_A 182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEE 249 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHH
Confidence 9886654 2467888899999999999999999999 88876543 33444444 455544
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=3.7e-17 Score=152.61 Aligned_cols=167 Identities=15% Similarity=0.104 Sum_probs=130.5
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
.+...+..+|..+...|++++|+..|+++++.+ |.++.++..+|.++...|++++|+.
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------P~~~~a~~~la~~~~~~g~~~~A~~ 172 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS----------------------NQNGEIGLLLAETLIALNRSEDAEA 172 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------TSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------CcchhHHHHHHHHHHHCCCHHHHHH
Confidence 666777778888888888888888888888776 4557778888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
.+++++..+|+........+..+...++.++|+..|++++..+|+++.+++.+|.++...|+++ +|+..|+++++.+|
T Consensus 173 ~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~--~A~~~l~~~l~~~p 250 (287)
T 3qou_A 173 VLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNE--EALELLFGHLRXDL 250 (287)
T ss_dssp HHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCT
T ss_pred HHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHH--HHHHHHHHHHhccc
Confidence 8888877777666566666666777777777888888888888888888888888888888877 88888888888888
Q ss_pred CC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 546 MN--SSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 546 ~~--~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
++ ..++..++.++...|+ .++|...|++++.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~---~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGT---GDALASXYRRQLY 283 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCC---CCcHHHHHHHHHH
Confidence 77 7778888888888888 8888888887764
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=2.3e-17 Score=132.67 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=99.0
Q ss_pred HhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcC
Q 007775 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLS 458 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 458 (590)
..++| +.+..+..+|..+.+.|++++|+..|+++++.+ |.++.+|..+|.++...|
T Consensus 6 a~inP--~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~~~~~~~~~~ 61 (126)
T 4gco_A 6 AYINP--ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----------------------PENAILYSNRAACLTKLM 61 (126)
T ss_dssp -CCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHhhHHHhhc
Confidence 34555 677788888888888888888888888888887 556788888888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 007775 459 QWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVL 522 (590)
Q Consensus 459 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 522 (590)
++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..++..++.++
T Consensus 62 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888888888888888888888877653
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.74 E-value=8.8e-17 Score=150.08 Aligned_cols=169 Identities=15% Similarity=0.052 Sum_probs=137.5
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHH
Q 007775 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (590)
Q Consensus 313 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 392 (590)
.|.+...++.+|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+++++...| +......
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~ 189 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG-EIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGL 189 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch-hHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHH
Confidence 488888899999999999999999999999999999998 8999999999999999999999999988887 5555566
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
..+..+...++.++|+..|++++..+ |.++.+++.+|.++...|++++|+..|+++++
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~----------------------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN----------------------PEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC----------------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66666777777777888888777776 55577777788888888888888888888877
Q ss_pred cCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 473 ISSYS--ASKCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 473 ~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
.+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 248 ~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 248 XDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 77776 66777777777777777777777777653
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=3.6e-17 Score=147.25 Aligned_cols=210 Identities=14% Similarity=0.030 Sum_probs=162.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHH-------HHHHHHcCChHHHHHHHHHHHhccCCC-------
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM-------ARILSAQKRYEDAETILNAALDQTGKW------- 385 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~a~~~~~~~------- 385 (590)
++..|..+ ..+++..|...|.+++..+|+.. ++|..+ +.++...+++.+++..+++.+.+.|..
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~-Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESAC-DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhh-HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 34444454 57888999999999999999988 999888 788888888888888888888866521
Q ss_pred ------------CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHH
Q 007775 386 ------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFI 453 (590)
Q Consensus 386 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 453 (590)
....+...++.++...|++++|.+.|..++... |.+. ..+.+|.+
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~----------------------p~~~-~~~~~a~l 144 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG----------------------SEHL-VAWMKAVV 144 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT----------------------CHHH-HHHHHHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------------------CchH-HHHHHHHH
Confidence 113455567888888888888888888766554 5556 88888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-ChhhHHHHHHHHHHcCCC
Q 007775 454 YINLSQWHDAEICLSKSEAISSYS--ASKCHATGVLYEKKGLYKEAIKAFRSALNID--PA-HVPSLISTAVVLRKLSDQ 528 (590)
Q Consensus 454 ~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~ 528 (590)
+.+.++|++|+.+|+++....+.. ..+++.+|.++...|++++|+.+|++++... |. .+.+++.+|.++.++|+.
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 888888888888888776643221 3478888888888888888888888887543 54 556888888888888888
Q ss_pred chHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 007775 529 SNAVIRSFLMAALRLDGMNSSAWYNLGLF 557 (590)
Q Consensus 529 ~l~~A~~~~~~a~~~~p~~~~~~~~l~~~ 557 (590)
+ +|...|++++..+|+ +.++..|..-
T Consensus 225 d--eA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 225 S--AAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp H--HHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred H--HHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 7 888888888888888 7777666443
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=9.3e-17 Score=165.92 Aligned_cols=158 Identities=12% Similarity=0.019 Sum_probs=135.6
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
.|++++|+..|+++++.+ |.+..++..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 59 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR----------------------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59 (568)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHH
T ss_pred CccHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 478999999999999987 5668999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007775 481 CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS 560 (590)
Q Consensus 481 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 560 (590)
+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +|+..|+++++.+|+++.++..+|.++..
T Consensus 60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAE--AAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred h---CCCCchHHHHHHHHHHhccccCCC
Q 007775 561 Q---GTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 561 ~---g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
. |+ +++|.+.|+++++.+|++.
T Consensus 138 ~~~~g~---~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 138 LCDWRA---LDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp TTCCTT---HHHHHHHHHHHHHHTCCCS
T ss_pred hhcccc---HHHHHHHHHHHHhcCCccc
Confidence 9 99 9999999999999999864
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.71 E-value=2.3e-17 Score=136.43 Aligned_cols=109 Identities=10% Similarity=0.133 Sum_probs=105.1
Q ss_pred cccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHH
Q 007775 438 HARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIS 517 (590)
Q Consensus 438 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 517 (590)
...|.++.+++.+|.++...|++++|+.+|++++.++|+++.+|..+|.++...|++++|+..|+++++++|+++.++++
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34488899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 518 TAVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 518 l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
+|.++..+|+++ +|+..|++++++.|+.+
T Consensus 110 lg~~~~~lg~~~--eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPL--KAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHH--HHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHH--HHHHHHHHHHHhCCCHH
Confidence 999999999999 99999999999999765
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.71 E-value=1.8e-16 Score=163.77 Aligned_cols=161 Identities=17% Similarity=0.063 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 377 (590)
+++|+..|++++ ..+|.+..++..+|.++...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+++
T Consensus 5 ~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 5 GPRELLQLRAAV-RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP-EAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444455555554 44454445555555555555555555555555555555444 4445555555555555555555555
Q ss_pred HHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhc
Q 007775 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINL 457 (590)
Q Consensus 378 a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 457 (590)
+++..| ++..++..+|.++...|++++|++.|+++++.+ |.+..++..++.++...
T Consensus 83 al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 83 ASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----------------------PEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHT
T ss_pred HHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHh
Confidence 554444 444444444555544555555555554444443 23344444444444444
Q ss_pred ---CChHHHHHHHHHHHhcCCCCHHHHHHH
Q 007775 458 ---SQWHDAEICLSKSEAISSYSASKCHAT 484 (590)
Q Consensus 458 ---g~~~~A~~~~~~a~~~~p~~~~~~~~l 484 (590)
|++++|...++++++.+|.+...+..+
T Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 139 CDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp TCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred hccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 444444444444444444444444333
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=8.1e-17 Score=144.95 Aligned_cols=200 Identities=12% Similarity=-0.003 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHH-------HHHHHHccCHHHHHHHHHHHHcccCCCc-------------------
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRL-------SLEYAEQRKLNAAHYYAKMLLKLEGGSN------------------- 351 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~p~~~------------------- 351 (590)
...|...|.+++ ..+|...++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 22 ~~~A~~~F~~a~-~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~ 100 (282)
T 4f3v_A 22 EARSLDLFTEIT-NYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTS 100 (282)
T ss_dssp HHHHHHHHHHHH-HHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSS
T ss_pred HHHHHHHHHHHH-HhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCC
Confidence 899999999999 9999999999999 8999999999999999999999777633
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccc
Q 007775 352 -LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (590)
Q Consensus 352 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 430 (590)
......++.++...|++++|.+.|..++...| .+. ..+.+|.++.+.+++++|+..|+++....
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------------ 165 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP------------ 165 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS------------
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC------------
Confidence 13455688999999999999999999988887 777 89999999999999999999998654431
Q ss_pred ccccccccccch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 431 FYKGSANHARSL-ELEVWLDLAFIYINLSQWHDAEICLSKSEAIS--SY-SASKCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 431 ~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
.|. ...+++.+|.++...|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++.
T Consensus 166 ---------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 166 ---------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 021 24589999999999999999999999998654 55 567999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHH
Q 007775 507 IDPAHVPSLISTAVVLR 523 (590)
Q Consensus 507 ~~p~~~~~~~~l~~~~~ 523 (590)
.+|+ ..++..|...-+
T Consensus 237 ~~P~-~~~~~aL~~~~~ 252 (282)
T 4f3v_A 237 THPE-PKVAAALKDPSY 252 (282)
T ss_dssp HSCC-HHHHHHHHCTTC
T ss_pred cCCc-HHHHHHHhCCCC
Confidence 9999 777766654433
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.70 E-value=2.8e-17 Score=136.43 Aligned_cols=110 Identities=19% Similarity=0.142 Sum_probs=65.9
Q ss_pred ccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHH
Q 007775 439 ARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIST 518 (590)
Q Consensus 439 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 518 (590)
..|.+...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 34555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
|.++...|+++ +|+..|++++++.|+++..
T Consensus 96 g~~~~~~g~~~--~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 96 AECLLQXGELA--EAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHTTCHH--HHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHcCCHH--HHHHHHHHHHHHCcCCCcc
Confidence 66666666655 6666666666665555443
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.70 E-value=6.2e-16 Score=137.22 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC--CChh
Q 007775 444 LEVWLDLAFIYINLS----QWHDAEICLSKSEAISSYSASKCHATGVLYEK----KGLYKEAIKAFRSALNIDP--AHVP 513 (590)
Q Consensus 444 ~~~~~~la~~~~~~g----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p--~~~~ 513 (590)
+.+++.+|.+|.. + ++++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| +++.
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 126 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD 126 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence 3444444544444 3 44555555554432 2344445555555444 4455555555555554444 2244
Q ss_pred hHHHHHHHHHH----cCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh-C-----CCCchHHHHHHHHHHhc
Q 007775 514 SLISTAVVLRK----LSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQ-G-----TQSSKLEAAECFEAAAS 579 (590)
Q Consensus 514 ~~~~l~~~~~~----~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-g-----~~~~~~~A~~~~~~al~ 579 (590)
+++.||.+|.. .++++ +|+.+|+++++. |.++.+++.||.+|... | + +++|+.+|+++.+
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~--~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d---~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDV--KASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPN---KQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHH--HHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHH--HHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCC---HHHHHHHHHHHHH
Confidence 45555555544 44444 555555555444 33444455555554432 1 3 5555555555544
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.69 E-value=1.6e-15 Score=134.61 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=100.5
Q ss_pred HHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc----CHhHHHHHH
Q 007775 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG----QLKGAVETY 411 (590)
Q Consensus 336 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~ 411 (590)
|+.+|+++.+. .++ .+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|
T Consensus 5 A~~~~~~aa~~--g~~-~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDR-RAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT--TCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHC--CCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 44455555443 334 55555555555555555555555555543 234555555555555 4 566666666
Q ss_pred HHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC--CCHHHHHHHH
Q 007775 412 THLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN----LSQWHDAEICLSKSEAISS--YSASKCHATG 485 (590)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~ 485 (590)
+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| .++.+++.+|
T Consensus 77 ~~A~~------------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg 132 (212)
T 3rjv_A 77 EKAVE------------------------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLG 132 (212)
T ss_dssp HHHHH------------------------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH
T ss_pred HHHHH------------------------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 66543 2235566666666665 5666666666666666655 2366666666
Q ss_pred HHHHH----cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHc-C-----CCchHHHHHHHHHHHhhc
Q 007775 486 VLYEK----KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKL-S-----DQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 486 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g-----~~~l~~A~~~~~~a~~~~ 544 (590)
.+|.. .+++++|+.+|+++.+. |.++.+++++|.+|... | +++ +|+.+|+++.+..
T Consensus 133 ~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~--~A~~~~~~A~~~g 198 (212)
T 3rjv_A 133 LIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQ--KALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHH--HHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHHHHHcC
Confidence 66666 56666666666666665 45556666666666543 2 444 6666666666653
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=1.1e-15 Score=124.93 Aligned_cols=135 Identities=30% Similarity=0.436 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
.+|..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 525 LSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 525 ~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
.|+++ +|+..+++++...|.++.++..+|.++...|+ +++|..+|+++++.+|++
T Consensus 82 ~~~~~--~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYD--EAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTTC
T ss_pred hcCHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCCC
Confidence 99999 99999999999999999999999999999999 999999999999998863
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.67 E-value=2.3e-16 Score=146.59 Aligned_cols=103 Identities=13% Similarity=-0.054 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHH
Q 007775 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (590)
Q Consensus 314 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 393 (590)
|.+...+..+|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..++++++..| ++..+++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 77 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-VYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFF 77 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 45667777888888888888888888888888888777 7888888888888888888888888888777 67777778
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHh
Q 007775 394 KAKVQLVQGQLKGAVETYTHLLAALQ 419 (590)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~~l~~~~ 419 (590)
+|.++...|++++|+..|+++++.+|
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 88888888888888888888877764
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.66 E-value=2e-16 Score=131.30 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 463 AEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 463 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
+...|++++.++|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|+++ +|+..|++++.
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~ 83 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD--LAIHSYSYGAV 83 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHh
Confidence 3456889999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 543 LDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 543 ~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
++|+++.+++.+|.++...|+ +++|+.+|+++++++|++|.
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCGG
T ss_pred cCCCCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999999999 99999999999999998874
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=5.8e-16 Score=143.92 Aligned_cols=203 Identities=7% Similarity=-0.053 Sum_probs=166.9
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccc
Q 007775 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (590)
Q Consensus 348 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 427 (590)
|.+. ..+..+|..+...|++++|+..|++++...| .+..++..+|.++...|++++|+..++++++.+
T Consensus 1 p~~a-~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------- 68 (281)
T 2c2l_A 1 SPSA-QELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD--------- 68 (281)
T ss_dssp CCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---------
T ss_pred ChhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------
Confidence 4555 8899999999999999999999999999998 889999999999999999999999999999987
Q ss_pred cccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007775 428 DKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI 507 (590)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 507 (590)
|.+..+++.+|.++...|++++|+..|+++++++|+++..+...+.... +..++..+.......
T Consensus 69 -------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 132 (281)
T 2c2l_A 69 -------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERR 132 (281)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTC
T ss_pred -------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 5668999999999999999999999999999999877443322222222 222333344444456
Q ss_pred CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHhccccCCC
Q 007775 508 DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQ-GTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 508 ~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
.|.+..+...++.++ .|+++ +|++.++++++.+|++......++.++... ++ +++|.+.|.++.+..+..+
T Consensus 133 ~~~~~~i~~~l~~l~--~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---~~~a~~~f~~a~~~~~~~~ 204 (281)
T 2c2l_A 133 IHQESELHSYLTRLI--AAERE--RELEECQRNHEGHEDDGHIRAQQACIEAKHDKY---MADMDELFSQVDEKRKKRD 204 (281)
T ss_dssp CCCCCHHHHHHHHHH--HHHHH--HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHH---HHHHHHHHHHSSCTTSCCC
T ss_pred HhhhHHHHHHHHHHH--HHHHH--HHHHHHHhhhccccchhhhhhHHHHHHHHHHHH---HHHHHHHHHhhhccccCCC
Confidence 777888888887765 68877 999999999999999988888888888877 77 9999999999988654433
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.66 E-value=2.1e-16 Score=150.91 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=141.1
Q ss_pred hcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---
Q 007775 401 QGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS--- 477 (590)
Q Consensus 401 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--- 477 (590)
.+++++|+..+++++... |..+.++..+|.++...|++++|+.+|++++.+.|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~----------------------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~ 183 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK----------------------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF 183 (336)
T ss_dssp EEEEECCCCGGGCCHHHH----------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC
T ss_pred EeecccccchhcCCHHHH----------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC
Confidence 456677777777777765 6678999999999999999999999999999999998
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 478 ------------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 478 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
..++.++|.++...|++++|+..|+++++++|+++.+++.+|.++..+|+++ +|+..|+++++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~P 261 (336)
T 1p5q_A 184 SNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE--LARADFQKVLQLYP 261 (336)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHCC
Confidence 6899999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHH-HHHHHHHhcc
Q 007775 546 MNSSAWYNLGLFYKSQGTQSSKLEA-AECFEAAASL 580 (590)
Q Consensus 546 ~~~~~~~~l~~~~~~~g~~~~~~~A-~~~~~~al~l 580 (590)
+++.++..++.++...|+ +++| ...|++++..
T Consensus 262 ~~~~a~~~l~~~~~~~~~---~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRR---QLAREKKLYANMFER 294 (336)
T ss_dssp SCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 999999999999999999 9999 5577777654
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.66 E-value=2.6e-16 Score=129.91 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=85.6
Q ss_pred ccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHH
Q 007775 437 NHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLI 516 (590)
Q Consensus 437 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 516 (590)
....|.+...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34456667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 517 STAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 517 ~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
.+|.++...|+++ +|+..|+++++++|+++..+.....+..
T Consensus 91 ~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 91 HAAECHLQLGDLD--GAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp HHHHHHHHTTCHH--HHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 7777777777776 7777777777777766655544444433
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=7.4e-16 Score=156.61 Aligned_cols=191 Identities=12% Similarity=0.093 Sum_probs=171.2
Q ss_pred ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcC----------HhHHHHHHHHHHHHHhhhhhccccccccccccc
Q 007775 367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ----------LKGAVETYTHLLAALQVQTKTFSSDKRFYKGSA 436 (590)
Q Consensus 367 ~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 436 (590)
..++|++.+++++..+| ++..+|+..+.++...|+ ++++++.++++++.+
T Consensus 44 ~~eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------------------ 103 (567)
T 1dce_A 44 LDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------------------ 103 (567)
T ss_dssp CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred CCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC------------------
Confidence 34567888888888888 778888888888888887 999999999999998
Q ss_pred ccccchHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCChh
Q 007775 437 NHARSLELEVWLDLAFIYINLS--QWHDAEICLSKSEAISSYSASKCHATGVLYEKKG-LYKEAIKAFRSALNIDPAHVP 513 (590)
Q Consensus 437 ~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 513 (590)
|.+..+|...+.++...+ ++++++.+++++++.+|.+..+|...+.+....| .++++++++.++++.+|++..
T Consensus 104 ----pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s 179 (567)
T 1dce_A 104 ----PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179 (567)
T ss_dssp ----TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred ----CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence 666999999999999999 6799999999999999999999999999999999 999999999999999999999
Q ss_pred hHHHHHHHHHHcCCC------------chHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHH------------
Q 007775 514 SLISTAVVLRKLSDQ------------SNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLE------------ 569 (590)
Q Consensus 514 ~~~~l~~~~~~~g~~------------~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~------------ 569 (590)
+|...+.++...++. .++++++++.+++..+|++..+|+.++.++...++ +++
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~---~~~~~~~~~~~~~~~ 256 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP---HDVLCCVHVSREEAC 256 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC---CSCEEEEEEETTTTE
T ss_pred HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC---ccceeeeeeccCCce
Confidence 999999999986222 13499999999999999999999999999999999 777
Q ss_pred HHHHHHHHhccccCC
Q 007775 570 AAECFEAAASLEETA 584 (590)
Q Consensus 570 A~~~~~~al~l~p~~ 584 (590)
|+.+|.+++.++|..
T Consensus 257 ~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 257 LSVCFSRPLTVGSRM 271 (567)
T ss_dssp EEEEEEEEECTTBTT
T ss_pred EEEEeccceeccccc
Confidence 677788888888764
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.65 E-value=1.9e-17 Score=158.22 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=138.3
Q ss_pred HHHHHHHHHH----HHHhhCCCChHHHHHHHHHHH------------HccCHHHHHHHHHHHHcccCCCcHHHHHHHHHH
Q 007775 298 QAKALQALVS----AARSTNMRDLSILYRLSLEYA------------EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (590)
Q Consensus 298 ~~~A~~~~~~----a~~~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 361 (590)
+++|+..+.. ++ .+.|.. ++...|.... ..+++++|+..+++++..+|... .++..+|.+
T Consensus 81 ~e~al~~~~~Ge~~~l-~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a-~~~~~~g~~ 156 (336)
T 1p5q_A 81 LERAIQRMEKGEHSIV-YLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQS-TIVKERGTV 156 (336)
T ss_dssp HHHHHTTCCTTCEEEE-EECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEE-EECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHH-HHHHHHHHH
Confidence 8889988888 77 777775 4444443322 34566667777777777777766 777777777
Q ss_pred HHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccc
Q 007775 362 LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARS 441 (590)
Q Consensus 362 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (590)
+...|++++|+..|++++...|. +... .. +...... +
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~--~~~~------------~~-------~~~~~~~----------------------~ 193 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEY--ESSF------------SN-------EEAQKAQ----------------------A 193 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTT--CCCC------------CS-------HHHHHHH----------------------H
T ss_pred HHHCCCHHHHHHHHHHHHHHhhc--cccC------------Ch-------HHHHHHH----------------------H
Confidence 77777777777777777777762 2110 00 0111111 3
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 442 LELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
....+|.++|.++...|++++|+.+|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus 194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 44667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCCchHHH-HHHHHHHHh
Q 007775 522 LRKLSDQSNAVI-RSFLMAALR 542 (590)
Q Consensus 522 ~~~~g~~~l~~A-~~~~~~a~~ 542 (590)
+...|+++ +| ...|.+++.
T Consensus 274 ~~~~~~~~--~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQRIRRQL--AREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHH
Confidence 88888877 66 445666554
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.1e-15 Score=119.94 Aligned_cols=117 Identities=17% Similarity=0.057 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 442 LELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
..+..|..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHhhc------CCCHHHHHHHHHHHHH
Q 007775 522 LRKLSDQSNAVIRSFLMAALRLD------GMNSSAWYNLGLFYKS 560 (590)
Q Consensus 522 ~~~~g~~~l~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~ 560 (590)
+...|+++ +|+..|+++++++ |.++.++..++.+...
T Consensus 82 ~~~~~~~~--~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 82 QIAVKEYA--SALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHTTCHH--HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhCHH--HHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999 9999999999999 9999999988887654
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.63 E-value=2.1e-15 Score=129.96 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=118.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH-HHHcCCC--ch
Q 007775 454 YINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV-LRKLSDQ--SN 530 (590)
Q Consensus 454 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~--~l 530 (590)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~- 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA- 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH-
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH-
Confidence 35678999999999999999999999999999999999999999999999999999999999999999 8899998 8
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 531 AVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 531 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
+|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++++|+++.
T Consensus 99 -~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 -QTRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp -HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCTTSC
T ss_pred -HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999 99999999999999998864
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=7.9e-15 Score=124.74 Aligned_cols=137 Identities=13% Similarity=0.043 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 007775 442 LELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV 521 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 521 (590)
..+..+..+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHH--HHHhCCCCchHHHHHHHHHHhccccC
Q 007775 522 LRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLF--YKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 522 ~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
+...|+++ +|+.+|+++++.+|.++.++..++.+ +...|+ +++|+..+.++..+.+.
T Consensus 91 ~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 91 NMALGKFR--AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHTTCHH--HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHhccHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHHhcc
Confidence 99999999 99999999999999999988555544 888999 99999999998776544
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.63 E-value=1.1e-14 Score=118.94 Aligned_cols=135 Identities=24% Similarity=0.312 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007775 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLS 468 (590)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 468 (590)
.+++.+|.++...|++++|+..++++++.. |.+..++..+|.++...|++++|+.+++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 59 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC----------------------CcchhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 467889999999999999999999999886 4557889999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC
Q 007775 469 KSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN 547 (590)
Q Consensus 469 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~ 547 (590)
+++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+++ +|...+++++..+|++
T Consensus 60 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 60 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD--EAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHHSTTC
T ss_pred HHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHH--HHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999998863
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=7.1e-15 Score=130.87 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 007775 443 ELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVL 522 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 522 (590)
....++.+|..+...|++++|+..|++++ . .++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 35678899999999999999999999985 3 37899999999999999999999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHhhcCCCH----------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 523 RKLSDQSNAVIRSFLMAALRLDGMNS----------------SAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 523 ~~~g~~~l~~A~~~~~~a~~~~p~~~----------------~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
...|+++ +|+..|+++++..|.+. .+++.+|.++...|+ +++|+..|++++++.|++
T Consensus 82 ~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYD--LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHH--HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCSG
T ss_pred HHcccHH--HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCccc
Confidence 9999999 99999999999888776 999999999999999 999999999999999965
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.62 E-value=4.1e-15 Score=122.69 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=110.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 465 ICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 465 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|+++ +|+..|++++.++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE--QALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcC
Confidence 56788899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 545 GMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 545 p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
|+++.+++.+|.++...|+ +++|+.+|+++++++|++|.
T Consensus 83 p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGD---LDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTCGG
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999 99999999999999998874
No 132
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.62 E-value=1.7e-13 Score=124.96 Aligned_cols=191 Identities=14% Similarity=0.011 Sum_probs=155.5
Q ss_pred HHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 007775 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (590)
Q Consensus 336 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 415 (590)
|+..+++.+...+.+. .++..+|.++...|++++|++++.+.+..+|...+.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~~~~-~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP-YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7888999887765556 677899999999999999999999998887655788999999999999999999999999998
Q ss_pred HHHhhhhhcccccccccccccccccchHHHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 007775 416 AALQVQTKTFSSDKRFYKGSANHARSLELEVWLDL--AFIYINLS--QWHDAEICLSKSEAISSY--SASKCHATGVLYE 489 (590)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~ 489 (590)
+.+|+.. -.+-.+...+ +.+.+..| ++.+|...|+++....|+ .+..+.+ ++.
T Consensus 164 ~~~~d~~------------------~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~ 222 (310)
T 3mv2_B 164 NAIEDTV------------------SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHL 222 (310)
T ss_dssp HHSCHHH------------------HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHH
T ss_pred hcCcccc------------------ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHH
Confidence 8863100 0012333444 44465556 999999999999888886 2333333 899
Q ss_pred HcCCHHHHHHHHHHHhcc----------CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHH
Q 007775 490 KKGLYKEAIKAFRSALNI----------DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 490 ~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~ 552 (590)
.+|++++|...++.+++. +|+++.++.+++.+....|+ +|.++++++.+.+|+++.+..
T Consensus 223 ~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk----~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 223 QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL----DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC----TTHHHHHHHHHTTCCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh----HHHHHHHHHHHhCCCChHHHH
Confidence 999999999999988876 48899999999999999996 589999999999999987654
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.61 E-value=1.7e-15 Score=133.13 Aligned_cols=162 Identities=12% Similarity=-0.016 Sum_probs=124.1
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007775 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSE 471 (590)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 471 (590)
...+......|++++|.+.+....... +..+..+..+|..+...|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 65 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEK----------------------VQSAFDIKEEGNEFFKKNEINEAIVKYKEAL 65 (198)
T ss_dssp --------------CCCSGGGCCHHHH----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHH----------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555566677777776666544443 4557889999999999999999999999999
Q ss_pred hcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 007775 472 AISSYSA----------------SKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRS 535 (590)
Q Consensus 472 ~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~ 535 (590)
...|.++ .++..+|.++...|++++|+.+++++++.+|+++.+++.+|.++...|+++ +|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--~A~~ 143 (198)
T 2fbn_A 66 DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE--EAKE 143 (198)
T ss_dssp HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH--HHHH
T ss_pred HHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHH--HHHH
Confidence 9998887 889999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHhcc
Q 007775 536 FLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAA-ECFEAAASL 580 (590)
Q Consensus 536 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~-~~~~~al~l 580 (590)
.|+++++++|+++.++..++.++...|+ ..++. ..|.+.+..
T Consensus 144 ~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 144 NLYKAASLNPNNLDIRNSYELCVNKLKE---ARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHH---HHC------------
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998 88887 555555543
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=3.9e-15 Score=151.34 Aligned_cols=187 Identities=10% Similarity=0.066 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc
Q 007775 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR----------YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (590)
Q Consensus 333 ~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g 402 (590)
.++|+..+.+++..+|++. .+|...+.++...|+ ++++++.++++++.+| .+..+|...+.++...|
T Consensus 45 ~eeal~~~~~~l~~nP~~~-taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPDFA-TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCchhH-HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcc
Confidence 4577888888999999888 888888888888887 8899999999999888 78889999999999888
Q ss_pred --CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCHH
Q 007775 403 --QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLS-QWHDAEICLSKSEAISSYSAS 479 (590)
Q Consensus 403 --~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~ 479 (590)
+++++++.++++++.+ |.+..+|...+.+....| .+++++++++++++.+|.+..
T Consensus 122 ~~~~~~el~~~~k~l~~d----------------------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s 179 (567)
T 1dce_A 122 EPNWARELELCARFLEAD----------------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred cccHHHHHHHHHHHHhhc----------------------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence 6699999999999997 566889999999999998 899999999999999999999
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHH------------H
Q 007775 480 KCHATGVLYEKK--------------GLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAV------------I 533 (590)
Q Consensus 480 ~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~------------A 533 (590)
+|..++.++... +.+++|++++.+++..+|++..+|+.++.++.+.++++ + |
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~--~~~~~~~~~~~~~~ 257 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD--VLCCVHVSREEACL 257 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS--CEEEEEEETTTTEE
T ss_pred HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc--ceeeeeeccCCceE
Confidence 999999998874 66899999999999999999999999999999999876 5 4
Q ss_pred HHHHHHHHhhcCC
Q 007775 534 RSFLMAALRLDGM 546 (590)
Q Consensus 534 ~~~~~~a~~~~p~ 546 (590)
+..|.+++.++|.
T Consensus 258 ~~~f~~~i~~~~~ 270 (567)
T 1dce_A 258 SVCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEEECTTBT
T ss_pred EEEeccceecccc
Confidence 5556677766665
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=118.54 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=119.0
Q ss_pred cccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHH
Q 007775 438 HARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIS 517 (590)
Q Consensus 438 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 517 (590)
...|.....+..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+++++++.+|+++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 34477899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 518 TAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 518 l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
+|.++...|+++ +|+.+|+++++.+|.+..++..++.++...|+
T Consensus 90 la~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYT--KAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHH--HHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHH--HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999 99999999999999999999999999998875
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=2.2e-14 Score=116.35 Aligned_cols=122 Identities=20% Similarity=0.166 Sum_probs=118.5
Q ss_pred cchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHH
Q 007775 440 RSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTA 519 (590)
Q Consensus 440 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 519 (590)
.|.++..+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 520 VVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 520 ~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
.++...|+++ +|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 88 ~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHV--EAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHH--HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHH--HHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999999999988
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=1.4e-14 Score=122.96 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=112.0
Q ss_pred ccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHH
Q 007775 439 ARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIST 518 (590)
Q Consensus 439 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 518 (590)
..+.++..+..+|.++...|++++|+.+|++++.++|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
|.++...|+++ +|+..|+++++++|+++.+|...+....
T Consensus 86 g~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 86 GLARFDMADYK--GAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHTTCHH--HHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHccCHH--HHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999 9999999999999999987777665544
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=1.4e-14 Score=128.91 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccc
Q 007775 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (590)
Q Consensus 354 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (590)
.++.+|.++...|++++|+..|++++ . .++.++..+|.++...|++++|+..|++++..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 67 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--D---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------- 67 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 34455555555555555555555543 1 234555555555555555555555555555554
Q ss_pred cccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHH
Q 007775 434 GSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSA----------------SKCHATGVLYEKKGLYKEA 497 (590)
Q Consensus 434 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A 497 (590)
|.++.++..+|.++...|++++|+..|++++...|.+. .+++.+|.++...|++++|
T Consensus 68 -------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 68 -------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 33345555555555555555555555555555444433 4455555555555555555
Q ss_pred HHHHHHHhccCCCC
Q 007775 498 IKAFRSALNIDPAH 511 (590)
Q Consensus 498 ~~~~~~al~~~p~~ 511 (590)
+..|+++++..|++
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 55555555555443
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=5.1e-14 Score=132.07 Aligned_cols=175 Identities=12% Similarity=0.036 Sum_probs=131.0
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
....+...+..+...|++++|++.++++++..+.. .........+..+|.++...|++++|+.+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 137 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH----------------PEFQQFLQWQYYVAAYVLKKVDYEYCILE 137 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC----------------HHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC----------------hhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 34455567777888888888888888887764311 00112244566788888888889999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccCCCCh----hhHHHHHHHHHHcCCCchHHH
Q 007775 467 LSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSAL---NIDPAHV----PSLISTAVVLRKLSDQSNAVI 533 (590)
Q Consensus 467 ~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~g~~~l~~A 533 (590)
+++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|...|+++ +|
T Consensus 138 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~--~A 215 (293)
T 2qfc_A 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE--ES 215 (293)
T ss_dssp HHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH--HH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH--HH
Confidence 88888765443 4578888999999999999999998888 4445432 57888999999999988 89
Q ss_pred HHHHHHHHhhcCC------CHHHHHHHHHHHHHhCCCCchHHH-HHHHHHHhcccc
Q 007775 534 RSFLMAALRLDGM------NSSAWYNLGLFYKSQGTQSSKLEA-AECFEAAASLEE 582 (590)
Q Consensus 534 ~~~~~~a~~~~p~------~~~~~~~l~~~~~~~g~~~~~~~A-~~~~~~al~l~p 582 (590)
+.++++++++.+. ...+++.+|.+|...|+ +++| ..+|++++.+..
T Consensus 216 l~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~---~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY---EEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHH
Confidence 9999988876532 26788889999999999 9999 777888887643
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.58 E-value=9.7e-15 Score=118.51 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 523 (590)
...+...|..+...|++++|+..|+++++++|+++.. .++...|.+..+|.++|.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~ 68 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALA 68 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHH
Confidence 5667777777777777777777777777777774321 011111222336666666666
Q ss_pred HcCCCchHHHHHHHHHHHhh-------cCCCHHHH----HHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 524 KLSDQSNAVIRSFLMAALRL-------DGMNSSAW----YNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~-------~p~~~~~~----~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
.+|+++ +|+..|++++++ +|+++.+| +++|.++..+|+ +++|+.+|+++++++|++..
T Consensus 69 ~Lgr~~--eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 69 GLRSFD--EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HTTCHH--HHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCCS
T ss_pred HCCCHH--HHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCcHH
Confidence 666666 666666666666 88777777 888888888888 88888888888888877754
No 141
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.57 E-value=4.1e-13 Score=122.54 Aligned_cols=257 Identities=11% Similarity=-0.028 Sum_probs=187.3
Q ss_pred HHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 007775 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE 250 (590)
Q Consensus 171 ~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~ 250 (590)
..-.|+|..++....+.-+. ......+.+.++|+..|++... . ...| ...+....+... .. .
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~--~~~~~~~~~~Rs~iAlg~~~~~-------~--~~~~-~~~a~~~la~~~--~~----~ 84 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKV--TDNTLLFYKAKTLLALGQYQSQ-------D--PTSK-LGKVLDLYVQFL--DT----K 84 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCC--CCHHHHHHHHHHHHHTTCCCCC-------C--SSST-THHHHHHHHHHH--TT----T
T ss_pred HHHhhHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHcCCCccC-------C--CCCH-HHHHHHHHHHHh--cc----c
Confidence 34578998888755543322 2234666778999999998741 1 2222 222333333222 22 2
Q ss_pred HHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCC--CChHHHHHHHHHHH
Q 007775 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RDLSILYRLSLEYA 328 (590)
Q Consensus 251 A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p--~~~~~~~~la~~~~ 328 (590)
|+..+++.+...+... .++..+|.++...|+ +++|++.+.+.+ ..+| .+.+++..++.++.
T Consensus 85 a~~~l~~l~~~~~~~~-----~~~~~la~i~~~~g~-----------~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP-----YELYLLATAQAILGD-----------LDKSLETCVEGI-DNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp CCHHHHHTTTTSCCCH-----HHHHHHHHHHHHHTC-----------HHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCc-----HHHHHHHHHHHHcCC-----------HHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHH
Confidence 6888888876543332 467899999999999 999999999999 8776 78899999999999
Q ss_pred HccCHHHHHHHHHHHHcccCC-----CcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh
Q 007775 329 EQRKLNAAHYYAKMLLKLEGG-----SNLKGWLLMARILSAQK--RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (590)
Q Consensus 329 ~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~ 401 (590)
..|+.+.|.+.++++.+.+|+ +.......-+.+....| ++.+|..+|+++.+..|.+.....+.. ++..+
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~ 224 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ 224 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc
Confidence 999999999999999999882 33133333344466666 999999999999888772113333333 89999
Q ss_pred cCHhHHHHHHHHHHHHHhhh--hhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH
Q 007775 402 GQLKGAVETYTHLLAALQVQ--TKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS 479 (590)
Q Consensus 402 g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 479 (590)
|++++|...++.+++..|+- .+. ..|.++.++.+++.+....|+ +|.++++++.+..|+++.
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~--------------~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKEN--------------AVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHH--------------HHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred CCHHHHHHHHHHHHHhccccccccc--------------CCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 99999999999888876430 000 016789999999988888897 899999999999999987
Q ss_pred HH
Q 007775 480 KC 481 (590)
Q Consensus 480 ~~ 481 (590)
+.
T Consensus 289 i~ 290 (310)
T 3mv2_B 289 IK 290 (310)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=2.7e-14 Score=114.83 Aligned_cols=112 Identities=10% Similarity=0.084 Sum_probs=94.6
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCh-------h
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHV-------P 513 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~ 513 (590)
++.+.++..+|..+...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++. .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 445778889999999999999999999999999999999999999999999999999999999999887664 3
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 007775 514 SLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLG 555 (590)
Q Consensus 514 ~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~ 555 (590)
++..+|.++...|+++ +|+.+|++++...|+ +.....+.
T Consensus 85 ~~~~lg~~~~~~~~~~--~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLS--LAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHTTCHH--HHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH--HHHHHHHHHHhhCcC-HHHHHHHH
Confidence 6777888888888888 888888888888774 55544443
No 143
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.57 E-value=4.7e-12 Score=126.73 Aligned_cols=217 Identities=9% Similarity=0.008 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHH
Q 007775 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (590)
Q Consensus 334 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (590)
+.....|++++...|..+ ..|...+..+...|+.++|..+|++++.. | .+..++...+.. .+.++. +++
T Consensus 196 ~Rv~~~ye~al~~~p~~~-~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P--~~~~l~~~y~~~----~e~~~~---~~~ 264 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAE-EVYFFYSEYLIGIGQKEKAKKVVERGIEM-S--DGMFLSLYYGLV----MDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CSSHHHHHHHHH----TTCTHH---HHH
T ss_pred HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C--CcHHHHHHHHhh----cchhHH---HHH
Confidence 344556677766666666 66777777666667777777777777766 5 444444332222 111111 222
Q ss_pred HHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-
Q 007775 414 LLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKG- 492 (590)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g- 492 (590)
+.+.... ... ........+....+|...+....+.++.+.|...|+++ ...+....+|...+.+-...+
T Consensus 265 l~~~~~~----~~~-----~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 265 LKRKYSM----GEA-----ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp HHHHTC-------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHh----hcc-----chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC
Confidence 2111000 000 00000011223568899999988889999999999999 433345667777777766666
Q ss_pred CHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHH
Q 007775 493 LYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAE 572 (590)
Q Consensus 493 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~ 572 (590)
+.+.|...|+.+++..|+.+..+...+......|+.+ .|...|+++ +.....|......-...|+ .+.+..
T Consensus 335 d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~--~aR~l~er~----~k~~~lw~~~~~fE~~~G~---~~~~r~ 405 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE--NARALFKRL----EKTSRMWDSMIEYEFMVGS---MELFRE 405 (493)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--HHHHHHHHS----CCBHHHHHHHHHHHHHHSC---HHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHH----HHHHHHHHHHHHHHHHCCC---HHHHHH
Confidence 6999999999999999999988888899889999988 999999998 3467888888888888999 999999
Q ss_pred HHHHHhcc
Q 007775 573 CFEAAASL 580 (590)
Q Consensus 573 ~~~~al~l 580 (590)
.+++++..
T Consensus 406 v~~~~~~~ 413 (493)
T 2uy1_A 406 LVDQKMDA 413 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999863
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.8e-14 Score=113.60 Aligned_cols=117 Identities=13% Similarity=0.049 Sum_probs=108.8
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
..+..+..+|..+...|++++|+..|+++++.+ |.++.+|..+|.++...|++++|+.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------p~~~~~~~~~a~~~~~~~~~~~A~~ 59 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----------------------PEDARGYSNRAAALAKLMSFPEAIA 59 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------CCChHHHHHHHHHHHHhcCHHHHHH
Confidence 456788999999999999999999999999997 5668999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCChhhHHHHHHHHHH
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID------PAHVPSLISTAVVLRK 524 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 524 (590)
.++++++++|+++.+++.+|.++...|++++|+..|+++++++ |++..++..++.+..+
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 8888888888877654
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.56 E-value=5.3e-14 Score=121.05 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=87.1
Q ss_pred HcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchH
Q 007775 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLE 443 (590)
Q Consensus 364 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (590)
..|++++|+..++++++..| .+..++..+|.++...|++++|+..|+++++.+ |.+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------------------p~~ 77 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----------------------GEN 77 (177)
T ss_dssp -----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------CSC
T ss_pred hccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------CCC
Confidence 45667777777777777766 666677777777777777777777777777766 444
Q ss_pred HHHHHHHHHH-HHhcCCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhH
Q 007775 444 LEVWLDLAFI-YINLSQW--HDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSL 515 (590)
Q Consensus 444 ~~~~~~la~~-~~~~g~~--~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 515 (590)
+.++..+|.+ +...|++ ++|+.++++++..+|+++.++..+|.++...|++++|+..|+++++.+|++....
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 6667777777 6667776 7777777777777777777777777777777777777777777777777665433
No 146
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.56 E-value=2.8e-13 Score=126.98 Aligned_cols=173 Identities=16% Similarity=0.077 Sum_probs=141.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc----hHH
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL-----KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----GEL 390 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~ 390 (590)
+...+..+...|++++|...++++++..+..+. ..+..+|.++...|++++|+..+++++...+...+ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344577889999999999999999998776551 13345888888899999999999999996543233 447
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
+..+|.+|...|++++|+.+|+++++..... ....+....++.++|.+|...|++++|+.+++++
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEAL---------------HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---------------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---------------ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8999999999999999999999999875321 1223556779999999999999999999999999
Q ss_pred HhcCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHhcc
Q 007775 471 EAISSYS------ASKCHATGVLYEKKG-LYKEAIKAFRSALNI 507 (590)
Q Consensus 471 ~~~~p~~------~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 507 (590)
+++.+.. +.++..+|.++...| .+++|+.+|++++.+
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9876443 778999999999999 479999999999864
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=2.5e-14 Score=113.92 Aligned_cols=101 Identities=15% Similarity=0.035 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
.++.+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|+++ +|+..|+++++++|+++.+++.+|.++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG--LAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35666777777777777777777777777777777777777777777766 7777777777777777777777777777
Q ss_pred HhCCCCchHHHHHHHHHHhccccCCC
Q 007775 560 SQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 560 ~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
..|+ +++|+..|+++++++|+++
T Consensus 97 ~~g~---~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHN---ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHH---HHHHHHHHHHHHC------
T ss_pred HcCC---HHHHHHHHHHHHHhCcCCC
Confidence 7777 7777777777777777654
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.55 E-value=2.1e-13 Score=127.90 Aligned_cols=179 Identities=15% Similarity=0.072 Sum_probs=142.5
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC--
Q 007775 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL-----KGWLLMARILSAQKRYEDAETILNAALDQTGKWE-- 386 (590)
Q Consensus 314 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-- 386 (590)
|.....+...+..+...|++++|+..+.++++..|.... ..+..+|.++...|++++|+..++++++..+...
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 334456677888999999999999999999988776431 3456788899999999999999999998754221
Q ss_pred --chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHH
Q 007775 387 --QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAE 464 (590)
Q Consensus 387 --~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 464 (590)
...++..+|.+|...|++++|+.+|+++++.....+ ........++.++|.+|...|++++|+
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~---------------~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH---------------DNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---------------CCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC---------------ccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 256889999999999999999999999997653210 000112368999999999999999999
Q ss_pred HHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 007775 465 ICLSKSEAISSY------SASKCHATGVLYEKKGLYKEA-IKAFRSALNI 507 (590)
Q Consensus 465 ~~~~~a~~~~p~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~ 507 (590)
.++++++.+.+. ...+++.+|.++...|++++| ..+|++++.+
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999887543 167788999999999999999 7778888754
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=4.9e-15 Score=130.16 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=114.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccc
Q 007775 358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSAN 437 (590)
Q Consensus 358 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 437 (590)
.+......|+++++.+.+.......+ .....+..+|..+...|++++|+..|++++...|.+++..... . ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---~---~~ 81 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKV--QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI---L---LD 81 (198)
T ss_dssp ------------CCCSGGGCCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH---H---HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh---H---HH
Confidence 34444455556665555554443333 4455666677777777777777777777776654321100000 0 00
Q ss_pred cccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHH
Q 007775 438 HARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIS 517 (590)
Q Consensus 438 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 517 (590)
........++..+|.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 161 (198)
T 2fbn_A 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 00011247899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCchHHHH
Q 007775 518 TAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 518 l~~~~~~~g~~~l~~A~ 534 (590)
++.++...++.. ++.
T Consensus 162 l~~~~~~~~~~~--~~~ 176 (198)
T 2fbn_A 162 YELCVNKLKEAR--KKD 176 (198)
T ss_dssp HHHHHHHHHHHH--C--
T ss_pred HHHHHHHHHHHH--HHH
Confidence 999999888776 555
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.54 E-value=4e-14 Score=120.05 Aligned_cols=108 Identities=22% Similarity=0.205 Sum_probs=103.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 474 SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 474 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
.+.++..+..+|.++...|++++|+..|+++++++|+++.++..+|.++...|+++ +|+..|+++++++|+++.+|+.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE--KAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCCHHHHHH
Confidence 34457889999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 554 LGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 554 l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
+|.++...|+ +++|+.+|+++++++|+++.
T Consensus 85 lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 85 LGLARFDMAD---YKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHccC---HHHHHHHHHHHHHhCCCchH
Confidence 9999999999 99999999999999999886
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=9.2e-15 Score=145.75 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=133.4
Q ss_pred HhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--
Q 007775 400 VQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS-- 477 (590)
Q Consensus 400 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-- 477 (590)
..+++++|+..|+.++... |..+..+..+|..+...|++++|+..|++++.+.|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~----------------------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~ 303 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEK----------------------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG 303 (457)
T ss_dssp EEEEEECCCCGGGSCHHHH----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS
T ss_pred hhhhcccCcchhhcCHHHH----------------------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc
Confidence 3456677777777777665 5668899999999999999999999999999999998
Q ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 478 -------------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 478 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
..++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|+++ +|+..|+++++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~--~A~~~~~~al~l~ 381 (457)
T 1kt0_A 304 LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE--SAKGDFEKVLEVN 381 (457)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhC
Confidence 6899999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchHHHHH-HHHHH
Q 007775 545 GMNSSAWYNLGLFYKSQGTQSSKLEAAE-CFEAA 577 (590)
Q Consensus 545 p~~~~~~~~l~~~~~~~g~~~~~~~A~~-~~~~a 577 (590)
|++..++..++.++...|+ +++|.. .|++.
T Consensus 382 P~~~~a~~~l~~~~~~~~~---~~~a~~~~~~~~ 412 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKE---HNERDRRIYANM 412 (457)
T ss_dssp ----CHHHHHHHHHHHHHH---HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 9999999999999999999 988874 34443
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.54 E-value=7.3e-14 Score=130.97 Aligned_cols=170 Identities=14% Similarity=0.069 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchH---HHHHHHHHHHHHhcCChHHHHHH
Q 007775 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLE---LEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
.+...+..+...|++++|...++++++..+.. +.. ...+..+|.++...|++++|+.+
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~ 137 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-------------------PEFQQFLQWQYYVAAYVLKKVDYEYCILE 137 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC-------------------HHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCC-------------------hHHHHHHHHHHHHHHHHHcccCHHHHHHH
Confidence 34455778889999999999999998754211 111 23455689999999999999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCChhhHHHHHHHHHHcCCCchHHH
Q 007775 467 LSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSALNI-------DPAHVPSLISTAVVLRKLSDQSNAVI 533 (590)
Q Consensus 467 ~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~l~~A 533 (590)
|++++...+.. ..++..+|.+|...|++++|+.+|+++++. .+....+++++|.+|...|+++ +|
T Consensus 138 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~--~A 215 (293)
T 3u3w_A 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE--ES 215 (293)
T ss_dssp HHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHH--HH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHH--HH
Confidence 99999865443 336899999999999999999999999942 2333568899999999999999 99
Q ss_pred HHHHHHHHhhcCCC------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 534 RSFLMAALRLDGMN------SSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 534 ~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
+.++++++++.+.. +.+++.+|.++..+|+. +++|+++|++|+.+..
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE--EAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHH
Confidence 99999999876443 78999999999999940 6999999999998754
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=2.6e-13 Score=108.88 Aligned_cols=118 Identities=27% Similarity=0.363 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 007775 443 ELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVL 522 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 522 (590)
...++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 007775 523 RKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQG 562 (590)
Q Consensus 523 ~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 562 (590)
...|+++ +|..+++++++.+|+++.++..+|.++...|
T Consensus 88 ~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYD--EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999 9999999999999999999999999988765
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=4.5e-14 Score=113.56 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH-------H
Q 007775 477 SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS-------S 549 (590)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~-------~ 549 (590)
.+.++..+|..++..|++++|+..|+++++++|+++.++.++|.+|..+|+++ +|+..|+++++++|+++ .
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFA--ECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHH--HHHHHHHHHHHhCcccchhhHHHHH
Confidence 35678899999999999999999999999999999999999999999999999 99999999999988653 5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 550 AWYNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 550 ~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
++..+|.++...|+ +++|+++|+++++..|+
T Consensus 85 ~~~~lg~~~~~~~~---~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQND---LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCcC
Confidence 78899999999999 99999999999998775
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.53 E-value=2e-13 Score=116.00 Aligned_cols=133 Identities=9% Similarity=0.072 Sum_probs=121.5
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
.+..+..+|..+...|++++|+..|++++... |.+..++..+|.++...|++++|+.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN----------------------PSNAIYYGNRSLAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 46678899999999999999999999999997 55688999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH--HHHcCCCchHHHHHHHHHHHhh
Q 007775 467 LSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV--LRKLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~l~~A~~~~~~a~~~ 543 (590)
+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|++..++..++.+ +...|+++ +|+..+.++...
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~ 146 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE--RAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH--HHHHcccchHHH
Confidence 9999999999999999999999999999999999999999999999888555544 88889988 999999887654
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.53 E-value=7.3e-14 Score=114.43 Aligned_cols=121 Identities=14% Similarity=0.063 Sum_probs=108.0
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAV 520 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 520 (590)
+.++..+..+|..+...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++++|+++.++..+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHhhcCC-----CHHHHHHHHHHHHHhCC
Q 007775 521 VLRKLSDQSNAVIRSFLMAALRLDGM-----NSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 521 ~~~~~g~~~l~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~~~g~ 563 (590)
++...|+++ +|+..|+++++.+|+ +..++..+..+......
T Consensus 86 ~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 86 CQLEMESYD--EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHTTCHH--HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHH--HHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 999999999999887 67777777776655443
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=2.5e-13 Score=107.71 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLR 523 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 523 (590)
+..+..+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 524 KLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
..|+++ +|...++++++.+|+++.++..++.+..
T Consensus 84 ~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 84 FLNRFE--EAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HTTCHH--HHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHhhHH--HHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999998 9999999999999999999999888753
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.53 E-value=2.2e-13 Score=110.32 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=114.5
Q ss_pred CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHH
Q 007775 386 EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEI 465 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 465 (590)
.+...+..+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~a~~~~~~~~~~~A~~ 67 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN----------------------PANAVYFCNRAAAYSKLGNYAGAVQ 67 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----------------------CCCHHHHHHHHHHHHHhhchHHHHH
Confidence 567788999999999999999999999999987 5558899999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc
Q 007775 466 CLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS 529 (590)
Q Consensus 466 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 529 (590)
++++++...|.++.++..+|.++...|++++|+..|+++++..|+++.++..++.++...|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999998863
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=4.8e-15 Score=148.27 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=129.0
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAV 520 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 520 (590)
+..+..+..+|..+...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++.++|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34466778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHH--HHHhCCCCchHHHHHHHH-----------HHhccccCCCCC
Q 007775 521 VLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLF--YKSQGTQSSKLEAAECFE-----------AAASLEETAPVE 587 (590)
Q Consensus 521 ~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~g~~~~~~~A~~~~~-----------~al~l~p~~~~~ 587 (590)
++..+|+++ +|+..|+++++.+|+++.++..++.+ +...|+ +++|++.++ ++++++|+...+
T Consensus 83 ~~~~~g~~~--eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 83 SNMALGKFR--AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHHHTCHH--HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhcccccccccc
Confidence 999999999 99999999999999999999999998 888999 999999999 888888877654
Q ss_pred C
Q 007775 588 P 588 (590)
Q Consensus 588 ~ 588 (590)
.
T Consensus 158 ~ 158 (477)
T 1wao_1 158 K 158 (477)
T ss_dssp C
T ss_pred c
Confidence 3
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.52 E-value=2.7e-14 Score=115.91 Aligned_cols=77 Identities=12% Similarity=-0.013 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCChhhH----HHHHHHHHHcCCCchHHHHHHHHHHHhhcC
Q 007775 477 SASKCHATGVLYEKKGLYKEAIKAFRSALNI-------DPAHVPSL----ISTAVVLRKLSDQSNAVIRSFLMAALRLDG 545 (590)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~----~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p 545 (590)
+..+|.++|.++..+|++++|+..|++++++ +|++..+| +++|.++..+|+++ +|+..|+++++++|
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e--EAl~~y~kAlel~p 133 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGA--EAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHH--HHHHHHHHHHhcCC
Confidence 3447888888888888888888888888888 88888888 88888888888887 88888888888888
Q ss_pred CCHHHHHHHH
Q 007775 546 MNSSAWYNLG 555 (590)
Q Consensus 546 ~~~~~~~~l~ 555 (590)
++..+...+.
T Consensus 134 ~d~~~~~~~~ 143 (159)
T 2hr2_A 134 ERKGETPGKE 143 (159)
T ss_dssp HCCSCCTTHH
T ss_pred CcHHHHHHHH
Confidence 7755444333
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=5.7e-14 Score=111.79 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCHH
Q 007775 525 LSDQSNAVIRSFLMAALRLDGMNSS 549 (590)
Q Consensus 525 ~g~~~l~~A~~~~~~a~~~~p~~~~ 549 (590)
.|+++ +|+..|+++++.+|+++.
T Consensus 98 ~g~~~--~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNAN--AALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHH--HHHHHHHHHHC-------
T ss_pred cCCHH--HHHHHHHHHHHhCcCCCC
Confidence 99999 999999999999998653
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.51 E-value=7.1e-14 Score=118.23 Aligned_cols=121 Identities=10% Similarity=-0.023 Sum_probs=111.4
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAI------------------SSYSASKCHATGVLYEKKGLYKEAIKAFR 502 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 502 (590)
...+..+...|..+...|++++|+..|++++.. +|.+..++.++|.++...|++++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 445788999999999999999999999999998 66667899999999999999999999999
Q ss_pred HHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHhCC
Q 007775 503 SALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS-SAWYNLGLFYKSQGT 563 (590)
Q Consensus 503 ~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~g~ 563 (590)
+++.++|+++.+++.+|.++..+|+++ +|+..|+++++++|+++ .+...++.+....++
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~--~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLD--EAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999998 677788887766654
No 163
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-13 Score=111.82 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=110.9
Q ss_pred CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHH
Q 007775 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAE 464 (590)
Q Consensus 385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 464 (590)
+.....+..+|.++...|++++|+..|+++++.. |.+..++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------~~~~~~~~~la~~~~~~~~~~~A~ 70 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----------------------PKDAKLYSNRAACYTKLLEFQLAL 70 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----------------------TTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------CCcHHHHHHHHHHHHHhccHHHHH
Confidence 3668889999999999999999999999999886 556889999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCC
Q 007775 465 ICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSD 527 (590)
Q Consensus 465 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 527 (590)
.+++++++..|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...|+
T Consensus 71 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999988764
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.50 E-value=2.1e-13 Score=111.70 Aligned_cols=109 Identities=22% Similarity=0.168 Sum_probs=103.1
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHH
Q 007775 472 AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAW 551 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~ 551 (590)
..+|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++ +|+..++++++.+|+++.+|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE--QALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhCchhHHHH
Confidence 3467789999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 552 YNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 552 ~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+.+|.++...|+ +++|+..|+++++++|+++
T Consensus 81 ~~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~ 111 (137)
T 3q49_B 81 FFLGQCQLEMES---YDEAIANLQRAYSLAKEQR 111 (137)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh---HHHHHHHHHHHHHHChhHH
Confidence 999999999999 9999999999999999844
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.50 E-value=3.3e-14 Score=141.67 Aligned_cols=165 Identities=18% Similarity=0.277 Sum_probs=113.7
Q ss_pred CChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHH
Q 007775 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELE 445 (590)
Q Consensus 366 g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (590)
+++++|+..++.+++..| .....+..+|..+...|++++|+..|+++++..|........ ......+....
T Consensus 248 ~~~~~A~~~~~~~~~~~~--~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~-------~~~~~~~~~~~ 318 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKL--EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK-------ESKASESFLLA 318 (457)
T ss_dssp EEEECCCCGGGSCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-------HHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChH-------HHHHHHHHHHH
Confidence 344444444444444444 444555555555555555555555555555554322100000 00000133478
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHc
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKL 525 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 525 (590)
+|.++|.+|...|++++|+.+|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHH-HHHHHH
Q 007775 526 SDQSNAVIRS-FLMAAL 541 (590)
Q Consensus 526 g~~~l~~A~~-~~~~a~ 541 (590)
++++ +|.. .+.+++
T Consensus 399 ~~~~--~a~~~~~~~~f 413 (457)
T 1kt0_A 399 KEHN--ERDRRIYANMF 413 (457)
T ss_dssp HHHH--HHHHHHHHHC-
T ss_pred HHHH--HHHHHHHHHHH
Confidence 9987 6654 344433
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.50 E-value=1.2e-13 Score=108.38 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=93.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC--CHHHH
Q 007775 474 SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM--NSSAW 551 (590)
Q Consensus 474 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~--~~~~~ 551 (590)
+|+++.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|+++ +|+..|+++++..|. ++.++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYE--EAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCcccchHHHH
Confidence 57778888888888888888888888888888888888888888888888888888 888888888888888 88888
Q ss_pred HHHHHHHHHh-CCCCchHHHHHHHHHHhccccCCC
Q 007775 552 YNLGLFYKSQ-GTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 552 ~~l~~~~~~~-g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
..+|.++... |+ +++|++++++++...|+++
T Consensus 80 ~~l~~~~~~~~~~---~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 80 AAKADALRYIEGK---EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHTTCSSC---SHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHhhcccCCC
Confidence 8888888888 88 8889999998888888765
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.49 E-value=2.6e-14 Score=136.41 Aligned_cols=142 Identities=10% Similarity=-0.028 Sum_probs=95.5
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSA-----------------SKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
+..+..+..+|..+...|++++|+..|++++...|.+. .+++++|.++...|++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999876 4899999999999999999999999
Q ss_pred HhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH-HhCCCCchHHHHHHHHHHhcccc
Q 007775 504 ALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK-SQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 504 al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-~~g~~~~~~~A~~~~~~al~l~p 582 (590)
+++++|+++.+++++|.++..+|+++ +|+..|+++++++|+++.++..++.+.. ..+. .+++...|++++...|
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~--~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMD--SARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQKEMYKGIFKGKD 330 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHH--HHHHHHHHTTC-----------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999 9999999999999999999999999854 4566 8899999999999999
Q ss_pred CCCCC
Q 007775 583 TAPVE 587 (590)
Q Consensus 583 ~~~~~ 587 (590)
+++..
T Consensus 331 ~~~~~ 335 (338)
T 2if4_A 331 EGGAK 335 (338)
T ss_dssp -----
T ss_pred CCCCC
Confidence 88753
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.9e-13 Score=111.03 Aligned_cols=120 Identities=14% Similarity=0.034 Sum_probs=112.3
Q ss_pred ccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhH
Q 007775 439 ARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS---ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSL 515 (590)
Q Consensus 439 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 515 (590)
..+.....+..+|..+...|++++|+.+|++++...|++ ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 346778999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007775 516 ISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS 560 (590)
Q Consensus 516 ~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 560 (590)
..+|.++...|+++ +|+.+|+++++.+|+++.++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLD--QAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHH--HHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHH--HHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999 99999999999999999999988887644
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.47 E-value=5.2e-13 Score=112.83 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=107.9
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
.+..+...|..+...|++++|+..|++++...+........... ......|....+|.++|.++...|++++|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP----EWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH----HHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH----HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45677788888888888888888888888874322110000000 00000266788999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHHcCC
Q 007775 467 LSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHV-PSLISTAVVLRKLSD 527 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~ 527 (590)
+++++.++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....++
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 667777777655443
No 170
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.47 E-value=1.6e-12 Score=104.20 Aligned_cols=117 Identities=23% Similarity=0.316 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL 467 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 467 (590)
...+..+|.++...|++++|+..|++++... |.+..++..+|.++...|++++|+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~la~~~~~~~~~~~A~~~~ 66 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------PNNAEAWYNLGNAYYKQGDYDEAIEYY 66 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------cCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5566677777777777777777777777765 344667777777777777777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcC
Q 007775 468 SKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLS 526 (590)
Q Consensus 468 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 526 (590)
++++...|.++.++..+|.++...|++++|+..+++++..+|+++.++..++.++...|
T Consensus 67 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 77777777777777777777777777777777777777777777777777777766543
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=1.8e-12 Score=102.74 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHH
Q 007775 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEIC 466 (590)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 466 (590)
.+..+..+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~ 60 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD----------------------PHNHVLYSNRSAAYAKKGDYQKAYED 60 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----------------------CCcHHHHHHHHHHHHhhccHHHHHHH
Confidence 46788899999999999999999999999987 55688999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 007775 467 LSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVL 522 (590)
Q Consensus 467 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 522 (590)
+++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..++.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999888765
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.46 E-value=1.3e-12 Score=115.08 Aligned_cols=162 Identities=10% Similarity=0.077 Sum_probs=113.0
Q ss_pred HHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccch
Q 007775 363 SAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSL 442 (590)
Q Consensus 363 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (590)
...|++++|.+.++......+ ....++..+|.++...|++++|+..+++++..... ....+.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~ 64 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQK----------------SGDHTA 64 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----------------TCCHHH
T ss_pred cccccHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH----------------cCCcHH
Confidence 456777888775544433222 55777788888888888888888888888876531 122355
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--C--
Q 007775 443 ELEVWLDLAFIYINLSQWHDAEICLSKSEAI---SSYS----ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA--H-- 511 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~-- 511 (590)
...++..+|.++...|++++|+.++++++.+ .+++ ..++..+|.++...|++++|+.++++++...+. +
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 5678888888888888888888888888776 3322 455778888888888888888888888764321 1
Q ss_pred --hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 512 --VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 512 --~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
..++..+|.++...|+++ +|..++++++++.
T Consensus 145 ~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~ 177 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLL--EAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHH--HHHHHHHHHHHHH
Confidence 234577888888888887 8888888887654
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.46 E-value=1.6e-12 Score=114.51 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=131.0
Q ss_pred HHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC----CCchHHHHHHHHHHHHhc
Q 007775 327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK----WEQGELLRTKAKVQLVQG 402 (590)
Q Consensus 327 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~~~la~~~~~~g 402 (590)
....|++++|.+.++.... +|.....++..+|.++...|++++|+..+++++..... +....++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3568999999996655544 45333389999999999999999999999999985321 145678899999999999
Q ss_pred CHhHHHHHHHHHHHHHhhhhhcccccccccccccccccc-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--C--
Q 007775 403 QLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARS-LELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY--S-- 477 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-- 477 (590)
++++|+..+++++...... ++.+ ....++..+|.++...|++++|+.++++++...+. +
T Consensus 81 ~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASL----------------PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHS----------------CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHHHHc----------------CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 9999999999999985321 1112 45778999999999999999999999999876432 2
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 478 --ASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 478 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
..++..+|.++...|++++|+..+++++++..
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 33468999999999999999999999987643
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=1.3e-12 Score=105.66 Aligned_cols=117 Identities=12% Similarity=0.040 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSA---SKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLIST 518 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 518 (590)
..++.+|..+...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++..|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3567889999999999999999999999999987 799999999999999999999999999999999 8889999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 519 AVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 519 ~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
|.++...|+++ +|+..|++++...|+++.+...+..+-...++
T Consensus 83 a~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 83 GLSQYGEGKNT--EAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHTTCHH--HHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHH--HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 99999999998 99999999999999998887776666554444
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=8.8e-13 Score=106.77 Aligned_cols=119 Identities=10% Similarity=0.008 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------hhh
Q 007775 442 LELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH-------VPS 514 (590)
Q Consensus 442 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 514 (590)
..+..+..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.++++++...|++ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3477899999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 515 LISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 515 ~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
+..+|.++...|+++ +|+.+|+++++..| ++..+..++.+....++
T Consensus 82 ~~~la~~~~~~~~~~--~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYK--DAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHH--HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHH--HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999998 68889888888776654
No 176
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.42 E-value=4.3e-10 Score=112.53 Aligned_cols=209 Identities=10% Similarity=-0.059 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 377 (590)
.+.....|++++ ...|..+..|...+..+...|+.++|...|++++.. |.+. ..|...+... +.++....+..
T Consensus 195 ~~Rv~~~ye~al-~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-~l~~~y~~~~----e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYIL-DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-FLSLYYGLVM----DEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-HHHHHHHHHT----TCTHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-HHHHHHHhhc----chhHHHHHHHH
Confidence 345678999999 899999999999999999999999999999999999 9987 6666544431 11121111111
Q ss_pred HHhcc--------CCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHH
Q 007775 378 ALDQT--------GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLD 449 (590)
Q Consensus 378 a~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (590)
..... +......+|...+....+.++.+.|..+|+++ . .| +....+|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~---------------------~~~~~v~i~ 324 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NE---------------------GVGPHVFIY 324 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TS---------------------CCCHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CC---------------------CCChHHHHH
Confidence 11100 10123467888888888899999999999999 3 22 122456766
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCC
Q 007775 450 LAFIYINLS-QWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQ 528 (590)
Q Consensus 450 la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 528 (590)
.+.+....+ +.+.|..+|+.+++..|+++..|...+......|+.+.|...|+++. .....|......-...|+.
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCH
Confidence 676666555 69999999999999999999988888888899999999999999983 4577888888888889998
Q ss_pred chHHHHHHHHHHHh
Q 007775 529 SNAVIRSFLMAALR 542 (590)
Q Consensus 529 ~l~~A~~~~~~a~~ 542 (590)
+ .+...+++++.
T Consensus 401 ~--~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 E--LFRELVDQKMD 412 (493)
T ss_dssp H--HHHHHHHHHHH
T ss_pred H--HHHHHHHHHHH
Confidence 7 88888998875
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.5e-12 Score=127.09 Aligned_cols=209 Identities=9% Similarity=0.047 Sum_probs=169.7
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007775 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN----------------LKGWLLMARILSAQKRYEDAETILNAALD 380 (590)
Q Consensus 317 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 380 (590)
|.+....|..+...|++++|++.|.++++..|... ..++..+|.+|...|++++|.+++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566778888999999999999999998877643 03588999999999999999999999988
Q ss_pred ccCCCCc----hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh
Q 007775 381 QTGKWEQ----GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN 456 (590)
Q Consensus 381 ~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 456 (590)
..+.... ..+...++.++...|++++|+..+++++...+.. ...+....++..+|.+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE----------------KRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS----------------SCCSSHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh----------------CccHHHHHHHHHHHHHHHH
Confidence 7653322 2355677888888999999999999999887532 2224457899999999999
Q ss_pred cCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---C----hhhHHHHHHHHH
Q 007775 457 LSQWHDAEICLSKSEAIS------SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA---H----VPSLISTAVVLR 523 (590)
Q Consensus 457 ~g~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~----~~~~~~l~~~~~ 523 (590)
.|++++|..++++++... +....++..+|.+|...|++++|...+++++...+. . ...+..+|.++.
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 999999999999987652 223678999999999999999999999999876432 2 345678888888
Q ss_pred HcCCCchHHHHHHHHHHHhh
Q 007775 524 KLSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 524 ~~g~~~l~~A~~~~~~a~~~ 543 (590)
..|++. +|..+|.++++.
T Consensus 228 ~~~~y~--~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 228 EDKDYK--TAFSYFFESFES 245 (434)
T ss_dssp SSSCHH--HHHHHHHHHHHH
T ss_pred HHHhHH--HHHHHHHHHHHH
Confidence 999998 999999998864
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=5.2e-13 Score=127.40 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
.+|.++|.++...|++++|+.+|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.+...
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998554
Q ss_pred -cCCCchHHHHHHHHHHHhhcCCCHH
Q 007775 525 -LSDQSNAVIRSFLMAALRLDGMNSS 549 (590)
Q Consensus 525 -~g~~~l~~A~~~~~~a~~~~p~~~~ 549 (590)
.+..+ ++...|.+++...|.++.
T Consensus 311 ~~~~~~--~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQ--KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------------------
T ss_pred HHHHHH--HHHHHHHHhhCCCCCCCC
Confidence 45556 899999999999987753
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.41 E-value=8.3e-13 Score=103.58 Aligned_cols=106 Identities=10% Similarity=0.052 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--ChhhHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPA--HVPSLIST 518 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 518 (590)
|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..|+++++..|+ +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 5567789999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-CCCchHHHHHHHHHHHhhcCCCH
Q 007775 519 AVVLRKL-SDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 519 ~~~~~~~-g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
|.++... |+++ +|+.++++++...|.++
T Consensus 83 ~~~~~~~~~~~~--~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEV--EAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSH--HHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHH--HHHHHHHHHhhcccCCC
Confidence 9999999 9999 99999999999998764
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.41 E-value=1.8e-12 Score=124.96 Aligned_cols=125 Identities=15% Similarity=0.108 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEA----------------ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI 507 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 507 (590)
+..+..+|..+...|++++|+..|+++++ ..|.+..++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999998 77778899999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHH
Q 007775 508 DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAEC 573 (590)
Q Consensus 508 ~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~ 573 (590)
+|+++.+++.+|.++..+|+++ +|+..|+++++++|++..++..++.++...++ .+++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~--eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~---~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYD--QALADLKKAQEIAPEDKAIQAELLKVKQKIKA---QKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999 8887653
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.41 E-value=3.8e-14 Score=141.81 Aligned_cols=123 Identities=8% Similarity=0.064 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007775 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSE 471 (590)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 471 (590)
..+|..+...|++++|+..|+++++.+ |.+..+|..+|.++...|++++|+..+++++
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~----------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN----------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334444455555555555555555554 3335555555555555555555555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHH--HHHcCCCchHHHHHHHH
Q 007775 472 AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVV--LRKLSDQSNAVIRSFLM 538 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~l~~A~~~~~ 538 (590)
+++|+++.+++.+|.++..+|++++|++.|+++++++|++..++..++.+ +...|+++ +|+..++
T Consensus 68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~--~A~~~~~ 134 (477)
T 1wao_1 68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE--RAIAGDE 134 (477)
T ss_dssp HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHC--CC-----
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH--HHhcccc
Confidence 55555555555555555555555555555555555555555555555555 44555555 5555555
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.40 E-value=4.4e-13 Score=108.51 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=86.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 455 INLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLY----------KEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 455 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
.+.+.+++|++.++++++++|+++++|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999998875 599999999999999999999999999998
Q ss_pred cC-----------CCchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 007775 525 LS-----------DQSNAVIRSFLMAALRLDGMNSSAWYNLG 555 (590)
Q Consensus 525 ~g-----------~~~l~~A~~~~~~a~~~~p~~~~~~~~l~ 555 (590)
+| +++ +|+.+|+++++++|++...+..+.
T Consensus 93 lg~l~P~~~~a~g~~~--eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFD--LATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHH--HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHH--HHHHHHHHHHHhCCCCHHHHHHHH
Confidence 75 677 999999999999999876555443
No 183
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-12 Score=106.58 Aligned_cols=110 Identities=23% Similarity=0.178 Sum_probs=104.3
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 472 AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH---VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
...|.+...+..+|..+...|++++|+..|+++++..|++ ..++..+|.++...|+++ +|+..++++++.+|+++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD--KAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHH--HHHHHHHHHHhhCccCH
Confidence 3457788999999999999999999999999999999998 899999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 549 SAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
.+++.+|.++...|+ +++|+.+|+++++++|+++.
T Consensus 100 ~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 100 KALYRRSQALEKLGR---LDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCcHH
Confidence 999999999999999 99999999999999998753
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.40 E-value=1.6e-12 Score=105.08 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC---HHHHH
Q 007775 479 SKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHV---PSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN---SSAWY 552 (590)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~---~~~~~ 552 (590)
..++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|+++ +|+..|++++..+|++ +.+++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQ--LAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHCCCCcccHHHHH
Confidence 4578899999999999999999999999999988 79999999999999999 9999999999999999 88999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhccccCCCC
Q 007775 553 NLGLFYKSQGTQSSKLEAAECFEAAASLEETAPV 586 (590)
Q Consensus 553 ~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~~ 586 (590)
.+|.++...|+ +++|+..|+++++..|+++.
T Consensus 81 ~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 81 KLGLSQYGEGK---NTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHHCCCChH
Confidence 99999999999 99999999999999998764
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=4.8e-13 Score=105.95 Aligned_cols=106 Identities=15% Similarity=0.048 Sum_probs=89.4
Q ss_pred hcCChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHH
Q 007775 456 NLSQWHDAEICLSKSEAI---SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAV 532 (590)
Q Consensus 456 ~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~ 532 (590)
..|++++|+.+|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE--Q 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--H
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH--H
Confidence 468899999999999999 58888999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 007775 533 IRSFLMAALRLDGMNSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 533 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 563 (590)
|+..+++++...|+++.+......+....+.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYADK 110 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999998876544444443333
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=4.5e-12 Score=126.23 Aligned_cols=209 Identities=16% Similarity=0.065 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCc---------------hHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---------------GELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 417 (590)
.+....|.-+...|++++|++.|.++++..+...+ ..++..+|.+|...|++++|++.+.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45566788889999999999999999998774322 235789999999999999999999999988
Q ss_pred HhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHc
Q 007775 418 LQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSY------SASKCHATGVLYEKK 491 (590)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~ 491 (590)
.+.. ........+...++.++...|++++|+.++++++...+. ...++..+|.++...
T Consensus 85 ~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 85 MMQF----------------AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp HHTS----------------CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHc----------------cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 6432 111223456778889999999999999999999875432 266889999999999
Q ss_pred CCHHHHHHHHHHHhcc------CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC---CC----HHHHHHHHHHH
Q 007775 492 GLYKEAIKAFRSALNI------DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG---MN----SSAWYNLGLFY 558 (590)
Q Consensus 492 g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p---~~----~~~~~~l~~~~ 558 (590)
|++++|+..+++++.. .|....++..++.+|...|+++ +|..++++++...+ .. ...+..+|.++
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLA--KSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 9999999999998754 2334678999999999999999 99999999987643 22 24567789999
Q ss_pred HHhCCCCchHHHHHHHHHHhcccc
Q 007775 559 KSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 559 ~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
...|+ +++|..+|.++++..+
T Consensus 227 ~~~~~---y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 227 CEDKD---YKTAFSYFFESFESYH 247 (434)
T ss_dssp TSSSC---HHHHHHHHHHHHHHHH
T ss_pred HHHHh---HHHHHHHHHHHHHHhh
Confidence 99999 9999999999987654
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.37 E-value=1.9e-12 Score=109.28 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=120.2
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH--- 511 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 511 (590)
+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4457789999999999999999999999999876543 2478999999999999999999999999875442
Q ss_pred ---hhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC------CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccc
Q 007775 512 ---VPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM------NSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEE 582 (590)
Q Consensus 512 ---~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p 582 (590)
..++..+|.++...|+++ +|+.+++++++..+. ...++..+|.++...|+ +++|..++++++++..
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYE--KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHH
Confidence 567899999999999999 999999999986432 24678899999999999 9999999999998865
Q ss_pred CC
Q 007775 583 TA 584 (590)
Q Consensus 583 ~~ 584 (590)
..
T Consensus 161 ~~ 162 (164)
T 3ro3_A 161 EV 162 (164)
T ss_dssp TC
T ss_pred Hh
Confidence 43
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.37 E-value=2.2e-12 Score=102.12 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=90.4
Q ss_pred HhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH
Q 007775 400 VQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS 479 (590)
Q Consensus 400 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 479 (590)
..|++++|+..|+++++..++ .|.++.++..+|.++...|++++|+.+|+++++.+|+++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~-------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 62 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ-------------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC-------------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 468999999999999988211 1667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCC
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSD 527 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 527 (590)
++..+|.++...|++++|+..+++++...|+++.+......+....+.
T Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADK 110 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998776544444443333
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.35 E-value=8.3e-12 Score=120.27 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007775 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLS 468 (590)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 468 (590)
..+..+|..+...|++++|+..|+++++..+..+.... ........|....+|.++|.++...|++++|+.+++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~------~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE------DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC------HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccC------hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34555666666666666666666666654332110000 000111236778999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHH
Q 007775 469 KSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRS 535 (590)
Q Consensus 469 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~ 535 (590)
++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++.+ ++.+
T Consensus 298 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~--~a~k 362 (370)
T 1ihg_A 298 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK--DKEK 362 (370)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHH
Confidence 9999999999999999999999999999999999999999999999999999999988877 6554
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.34 E-value=2.3e-12 Score=104.33 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=85.4
Q ss_pred HHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCCh----------HHHHHHHH
Q 007775 399 LVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQW----------HDAEICLS 468 (590)
Q Consensus 399 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~ 468 (590)
.+.+.+++|++.++++++.+ |.++.+|+++|.++...+++ ++|+..|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~----------------------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le 70 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN----------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHH
Confidence 45678999999999999998 67799999999999998875 59999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHhccCCCChh
Q 007775 469 KSEAISSYSASKCHATGVLYEKKG-----------LYKEAIKAFRSALNIDPAHVP 513 (590)
Q Consensus 469 ~a~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~ 513 (590)
++++++|+++.+|+++|.+|..+| ++++|+.+|+++++++|++..
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999885 899999999999999999753
No 191
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=2.3e-11 Score=98.29 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFY 432 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 432 (590)
..+..+|.++...|++++|+..+++++...| .++.++..+|.++...|++++|+..+++++...|...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------- 72 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR---------- 72 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc----------
Confidence 6788899999999999999999999999888 7788899999999999999999999999999875321
Q ss_pred ccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 007775 433 KGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKG 492 (590)
Q Consensus 433 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 492 (590)
...+....++..+|.++...|++++|+.+|++++...| ++..+..++.+....+
T Consensus 73 -----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 73 -----EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 01112277899999999999999999999999999988 6888888877765543
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.32 E-value=2.3e-11 Score=102.50 Aligned_cols=140 Identities=13% Similarity=0.008 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC----ch
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QG 388 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~ 388 (590)
.++..+|.++...|++++|+.+++++++..+... ..++..+|.++...|++++|+.+++++++..+... ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4556666666667777777777766665543211 02555666666666666666666666665543111 13
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007775 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLS 468 (590)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 468 (590)
.++..+|.++...|++++|+..+++++...+.. ...+....++..+|.++...|++++|+.+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----------------KDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------------cchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 455556666666666666666666666554211 1112234455555555555555555555555
Q ss_pred HHHhc
Q 007775 469 KSEAI 473 (590)
Q Consensus 469 ~a~~~ 473 (590)
+++++
T Consensus 154 ~a~~~ 158 (164)
T 3ro3_A 154 KHLEI 158 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 193
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.26 E-value=2.9e-10 Score=113.68 Aligned_cols=178 Identities=9% Similarity=0.042 Sum_probs=141.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcchHHHHHHH
Q 007775 66 VELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLL 145 (590)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 145 (590)
+..+...+++.|++++|+.+|++|...|+.|+..+++.+...|+.. + ........+..+.|..++
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~----~-----------~~~~~~~~~~l~~A~~lf 93 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA----E-----------AATESSPNPGLSRGFDIF 93 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC----C-----------CCSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC----C-----------chhhhhhcchHHHHHHHH
Confidence 3445578899999999999999999999999999998776554311 0 111234567788888877
Q ss_pred HHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 007775 146 MILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP-GIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (590)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 224 (590)
..| ...+.++|..+|+.+..++++.|++++|.+.|+++.. +..++..+|..+...|.+.|+.++|.++|+++...
T Consensus 94 ~~M----~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 94 KQM----IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHH----HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHH----HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 544 4456788999999999999999999999999998764 45678999999999999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Q 007775 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGD 264 (590)
Q Consensus 225 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~ 264 (590)
+..|+......+.. .+ ...|+.++|..+++++-+..-.
T Consensus 170 G~~Pd~~ty~~Li~-~~-~~~g~~d~A~~ll~~Mr~~g~~ 207 (501)
T 4g26_A 170 EVVPEEPELAALLK-VS-MDTKNADKVYKTLQRLRDLVRQ 207 (501)
T ss_dssp TCCCCHHHHHHHHH-HH-HHTTCHHHHHHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHH-HH-hhCCCHHHHHHHHHHHHHhCCC
Confidence 88888555444443 32 2667899999999998875433
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.8e-11 Score=95.77 Aligned_cols=93 Identities=10% Similarity=0.061 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------hhhHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH------VPSLIS 517 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 517 (590)
+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56777888888888888888888888888888888888888888888888888888888888888877 677777
Q ss_pred HHHHHHHcCCCchHHHHHHHH
Q 007775 518 TAVVLRKLSDQSNAVIRSFLM 538 (590)
Q Consensus 518 l~~~~~~~g~~~l~~A~~~~~ 538 (590)
+|.++...|+++ +|+..++
T Consensus 84 ~~~~~~~~~~~~--~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQ--IPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCC--CCSSSSS
T ss_pred HHHHHHHHHhHh--hhHhHHH
Confidence 777777777776 6655443
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.18 E-value=2.1e-10 Score=85.83 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHH
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAV 520 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 520 (590)
+..+.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcC
Q 007775 521 VLRKLS 526 (590)
Q Consensus 521 ~~~~~g 526 (590)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 766543
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.18 E-value=1e-10 Score=92.04 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 007775 461 HDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAA 540 (590)
Q Consensus 461 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a 540 (590)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++ +|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA--GARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HhhcCC--CHHHHHHHHHHHHHhCC
Q 007775 541 LRLDGM--NSSAWYNLGLFYKSQGT 563 (590)
Q Consensus 541 ~~~~p~--~~~~~~~l~~~~~~~g~ 563 (590)
++..|. +......+...+...|+
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhcc
Confidence 998774 44555555555555444
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.6e-11 Score=96.04 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC------HHH
Q 007775 477 SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN------SSA 550 (590)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~------~~~ 550 (590)
++..+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+++ +|+..|+++++++|++ ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYT--QAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhCCCccHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999 9999999999999999 889
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007775 551 WYNLGLFYKSQGTQSSKLEAAECFEAA 577 (590)
Q Consensus 551 ~~~l~~~~~~~g~~~~~~~A~~~~~~a 577 (590)
++.+|.++...|+ +++|+..+++.
T Consensus 81 ~~~~~~~~~~~~~---~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGS---VQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHC---CCCCSSSSSSC
T ss_pred HHHHHHHHHHHHh---HhhhHhHHHHh
Confidence 9999999999999 88887766543
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.14 E-value=2.5e-10 Score=85.39 Aligned_cols=85 Identities=32% Similarity=0.365 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 007775 476 YSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLG 555 (590)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~ 555 (590)
.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +|+.+|+++++.+|+++.++..+|
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD--EAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCCCCHHHHHHHH
Confidence 357789999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHhC
Q 007775 556 LFYKSQG 562 (590)
Q Consensus 556 ~~~~~~g 562 (590)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998765
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.11 E-value=4.6e-10 Score=88.25 Aligned_cols=93 Identities=14% Similarity=0.235 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007775 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (590)
Q Consensus 300 ~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 379 (590)
+|+..|++++ ..+|.++.+++.+|.++...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS-VAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHH-TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5788999999 99999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred hccCCCCchHHHHHH
Q 007775 380 DQTGKWEQGELLRTK 394 (590)
Q Consensus 380 ~~~~~~~~~~~~~~l 394 (590)
+..|...+......+
T Consensus 81 ~~~~~~~~~~~~~~l 95 (115)
T 2kat_A 81 AAAQSRGDQQVVKEL 95 (115)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HhccccccHHHHHHH
Confidence 988733333333333
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.10 E-value=1.4e-10 Score=88.50 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCChh-hHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007775 482 HATGVLYEKKGLYKEAIKAFRSALNIDPAHVP-SLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKS 560 (590)
Q Consensus 482 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 560 (590)
+..|.++...|++++|+..|+++++.+|+++. ++..+|.++...|+++ +|+..|+++++.+|+++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQ--KALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCcHHHHHH-------
Confidence 45677777778888888888888777777777 7788888888888877 7888888888888877776643
Q ss_pred hCCCCchHHHHHHHHHHhccccCCCCC
Q 007775 561 QGTQSSKLEAAECFEAAASLEETAPVE 587 (590)
Q Consensus 561 ~g~~~~~~~A~~~~~~al~l~p~~~~~ 587 (590)
+. +.+|+..|+++...+|+++..
T Consensus 75 -~~---~~~a~~~~~~~~~~~p~~~~~ 97 (99)
T 2kc7_A 75 -KM---VMDILNFYNKDMYNQLEHHHH 97 (99)
T ss_dssp -HH---HHHHHHHHCCTTHHHHCCSSC
T ss_pred -HH---HHHHHHHHHHHhccCcccccC
Confidence 55 777788888888888777654
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.02 E-value=1.2e-09 Score=83.28 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=72.8
Q ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHH
Q 007775 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (590)
Q Consensus 312 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 391 (590)
.+|+++.+++.+|.++...|++++|+..|+++++.+|++. .+|..+|.++...|++++|+..|+++++..|...+....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 3689999999999999999999999999999999999999 999999999999999999999999999887633344444
Q ss_pred HHHHHHHHHh
Q 007775 392 RTKAKVQLVQ 401 (590)
Q Consensus 392 ~~la~~~~~~ 401 (590)
..+..++...
T Consensus 81 ~~l~~~l~~~ 90 (100)
T 3ma5_A 81 SELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 4444444433
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=5.7e-10 Score=85.03 Aligned_cols=89 Identities=10% Similarity=-0.017 Sum_probs=69.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC--CHHH
Q 007775 473 ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM--NSSA 550 (590)
Q Consensus 473 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~--~~~~ 550 (590)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|+++ +|+..|++++++.|. +...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTD--DAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHSCHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhhcCCchhH
Confidence 468888999999999999999999999999999999999999999999999999988 999999999887653 3444
Q ss_pred HHHHHHHHHHhCC
Q 007775 551 WYNLGLFYKSQGT 563 (590)
Q Consensus 551 ~~~l~~~~~~~g~ 563 (590)
...+..++...+.
T Consensus 80 ~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 80 LSELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccc
Confidence 4455555544443
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.98 E-value=5.7e-10 Score=84.96 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcC
Q 007775 448 LDLAFIYINLSQWHDAEICLSKSEAISSYSAS-KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLS 526 (590)
Q Consensus 448 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 526 (590)
+..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56788999999999999999999999999999 99999999999999999999999999999999988744 3
Q ss_pred CCchHHHHHHHHHHHhhcCCCH
Q 007775 527 DQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 527 ~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
.+. ++...|+++...+|+++
T Consensus 76 ~~~--~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVM--DILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHH--HHHHHHCCTTHHHHCCS
T ss_pred HHH--HHHHHHHHHhccCcccc
Confidence 333 88888888888777653
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.97 E-value=2.5e-09 Score=105.94 Aligned_cols=136 Identities=11% Similarity=-0.021 Sum_probs=110.0
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
..+..+..+|++++|+..++++++..... ..+++|....++.++|.+|..+|+|++|+.++++++.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~--------------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPV--------------FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTT--------------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHh--------------cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34445668899999999999999986321 3345677888999999999999999999999999987
Q ss_pred c-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCChh---hHHHHHHHHHHcCCCchHHHHHH
Q 007775 473 I-----SSYSA---SKCHATGVLYEKKGLYKEAIKAFRSALNI-----DPAHVP---SLISTAVVLRKLSDQSNAVIRSF 536 (590)
Q Consensus 473 ~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~g~~~l~~A~~~ 536 (590)
+ .|++| ..++++|.+|..+|++++|+.+|++++++ .|+++. ....++.++..++.+. +|+..
T Consensus 380 i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~--~ae~~ 457 (490)
T 3n71_A 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR--QNEFM 457 (490)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 5 45554 45889999999999999999999999864 566644 4567888888888888 89888
Q ss_pred HHHHHhhc
Q 007775 537 LMAALRLD 544 (590)
Q Consensus 537 ~~~a~~~~ 544 (590)
|.++.+..
T Consensus 458 ~~~~~~~~ 465 (490)
T 3n71_A 458 YHKMREAA 465 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.96 E-value=7e-09 Score=102.73 Aligned_cols=135 Identities=7% Similarity=-0.019 Sum_probs=112.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccC------CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccc
Q 007775 358 MARILSAQKRYEDAETILNAALDQTG------KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (590)
Q Consensus 358 la~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 431 (590)
.+..+..+|+|++|+..++++++... ++....++..+|.+|..+|+|++|+.+++++++.....
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~---------- 384 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL---------- 384 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----------
Confidence 34456688999999999999998642 22446788899999999999999999999999986332
Q ss_pred cccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 432 YKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI-----SSYSAS---KCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
..+++|.....+++||.+|..+|++++|+.+|++++.+ .|++|. ...+++.++..++.+++|...|++
T Consensus 385 ----lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 385 ----YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp ----SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888899999999999999999999999999874 566654 467899999999999999999998
Q ss_pred Hhc
Q 007775 504 ALN 506 (590)
Q Consensus 504 al~ 506 (590)
+.+
T Consensus 461 ~~~ 463 (490)
T 3n71_A 461 MRE 463 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.95 E-value=7.5e-09 Score=84.01 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH----cCCCchHHH
Q 007775 458 SQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK----LSDQSNAVI 533 (590)
Q Consensus 458 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~l~~A 533 (590)
+++++|+.+|+++.+... +.+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .++++ +|
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~--~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR--KA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH--HH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHH--HH
Confidence 468899999999998874 3444 999999999999999999999876 678999999999998 78888 99
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHH----hCCCCchHHHHHHHHHHhccc
Q 007775 534 RSFLMAALRLDGMNSSAWYNLGLFYKS----QGTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 534 ~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~~~~A~~~~~~al~l~ 581 (590)
+.+|+++.+. .++.++++||.+|.. .++ +++|+.+|+++.+..
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d---~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN---EKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC---HHHHHHHHHHHHHCC
Confidence 9999999886 679999999999999 788 999999999999874
No 207
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.95 E-value=3.1e-07 Score=91.80 Aligned_cols=176 Identities=10% Similarity=-0.025 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHH
Q 007775 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (590)
Q Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 276 (590)
.+..+...+.+.|+.++|+++|+++...+..|+......++ ..|.... ...+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li-~~c~~~~-~~~~-------------------------- 79 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAE-AATE-------------------------- 79 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHH-HHHTTCC-CCSS--------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-HHHHhCC-chhh--------------------------
Confidence 35556677778888888888888887666666633332222 2332111 1100
Q ss_pred HHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccc--CCCcHHH
Q 007775 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE--GGSNLKG 354 (590)
Q Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~ 354 (590)
....+. .++|.++|+++....-+.+..++..+...|.+.|++++|..+|+++.+.. |+ . .+
T Consensus 80 ----~~~~~~-----------l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~-~t 142 (501)
T 4g26_A 80 ----SSPNPG-----------LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-L-RS 142 (501)
T ss_dssp ----SSCCHH-----------HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-H-HH
T ss_pred ----hhhcch-----------HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-c-ce
Confidence 012334 78999999998833345678899999999999999999999999998653 44 4 79
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 007775 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 355 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
|..+...|.+.|+.++|.++|+++.+..-.| +...+..+...+.+.|+.++|.++++++.+..
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999876543 56788999999999999999999999998764
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.93 E-value=1.5e-08 Score=89.77 Aligned_cols=86 Identities=7% Similarity=0.010 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhccCCC--ChhhHHHHHHHHHHc-----CCCchHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHh-CCC
Q 007775 494 YKEAIKAFRSALNIDPA--HVPSLISTAVVLRKL-----SDQSNAVIRSFLMAALRLDGMN-SSAWYNLGLFYKSQ-GTQ 564 (590)
Q Consensus 494 ~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~-----g~~~l~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~-g~~ 564 (590)
..+|...++++++++|+ +..+|..+|.+|... |+.+ +|..+|+++++++|+. ..+++.+|..+... |+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~e--kA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd- 255 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGME--KAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN- 255 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHH--HHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHH--HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-
Confidence 45666666666666666 455666666666664 6665 6666666666666653 66666666666653 66
Q ss_pred CchHHHHHHHHHHhccccCC
Q 007775 565 SSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 565 ~~~~~A~~~~~~al~l~p~~ 584 (590)
+++|..++++++...|..
T Consensus 256 --~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 256 --RAGFDEALDRALAIDPES 273 (301)
T ss_dssp --HHHHHHHHHHHHHCCGGG
T ss_pred --HHHHHHHHHHHHcCCCCC
Confidence 666666666666666653
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.93 E-value=1.1e-08 Score=82.90 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=103.6
Q ss_pred cCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHH
Q 007775 402 GQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKC 481 (590)
Q Consensus 402 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 481 (590)
+++++|+..|+++.+... +.+. +|.+|...+.+++|+.+|+++.+. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g~------------------------~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~ 60 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE------------------------MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGC 60 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC------------------------TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC------------------------Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHH
Confidence 578899999999988742 2333 999999999999999999999986 689999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH----cCCCchHHHHHHHHHHHhhcCCCHHHHHH
Q 007775 482 HATGVLYEK----KGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK----LSDQSNAVIRSFLMAALRLDGMNSSAWYN 553 (590)
Q Consensus 482 ~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~l~~A~~~~~~a~~~~p~~~~~~~~ 553 (590)
+.+|.+|.. .+++++|+.+|+++.+. .++.+.+++|.+|.. .++++ +|+.+|+++.+. .++.+...
T Consensus 61 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~--~A~~~~~~Aa~~--g~~~A~~~ 134 (138)
T 1klx_A 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK--QAVKTFEKACRL--GSEDACGI 134 (138)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH--HHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHH--HHHHHHHHHHHC--CCHHHHHH
Confidence 999999998 89999999999999876 679999999999999 88888 999999999987 45666666
Q ss_pred HHH
Q 007775 554 LGL 556 (590)
Q Consensus 554 l~~ 556 (590)
|+.
T Consensus 135 l~~ 137 (138)
T 1klx_A 135 LNN 137 (138)
T ss_dssp C--
T ss_pred Hhh
Confidence 553
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.83 E-value=3.1e-08 Score=92.04 Aligned_cols=132 Identities=15% Similarity=0.032 Sum_probs=104.7
Q ss_pred HHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-------HHHH-HHHH--HHhccCCCChhh
Q 007775 448 LDLAFIYINLS---QWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLY-------KEAI-KAFR--SALNIDPAHVPS 514 (590)
Q Consensus 448 ~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~-------~~A~-~~~~--~al~~~p~~~~~ 514 (590)
+..|..+...+ ...+|+.+|+++++++|+++.++..++.++.....+ .+++ ..++ .++..+|.++.+
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~ 279 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII 279 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHH
Confidence 33445555444 357899999999999999999999888887532111 1111 1222 234567999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 515 LISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 515 ~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
+..++..+...|+++ +|+..+++++.++| +..+|..+|.++...|+ +++|++.|++|+.++|..+
T Consensus 280 ~~alal~~l~~gd~d--~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 280 YQIKAVSALVKGKTD--ESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM---NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHTCHH--HHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHhCCCHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCcC
Confidence 999999999999998 99999999999997 47788899999999999 9999999999999999865
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.80 E-value=4e-08 Score=72.72 Aligned_cols=73 Identities=16% Similarity=0.072 Sum_probs=52.2
Q ss_pred CCCChhhHHHHHHHHHHcCC---CchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhccccCC
Q 007775 508 DPAHVPSLISTAVVLRKLSD---QSNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 508 ~p~~~~~~~~l~~~~~~~g~---~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
+|+++..+..+|.++...++ .+ +|...++++++.+|+++.+++.+|..++..|+ +++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~--~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~---y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTD--EVSLLLEQALQLEPYNEAALSLIANDHFISFR---FQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCC
Confidence 46677777777777765544 34 77777777777777777777777777777777 777777777777777764
Q ss_pred C
Q 007775 585 P 585 (590)
Q Consensus 585 ~ 585 (590)
|
T Consensus 77 ~ 77 (93)
T 3bee_A 77 L 77 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.75 E-value=7.6e-07 Score=79.07 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=78.4
Q ss_pred cccCCCcHHHHHHHHHHHHH---c--C------ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh-----cCHhHHH
Q 007775 345 KLEGGSNLKGWLLMARILSA---Q--K------RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-----GQLKGAV 408 (590)
Q Consensus 345 ~~~p~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~ 408 (590)
+.+|+++ ..+++.|.+... . | ....|...++++++++|...+..+|..+|.+|... |+.++|.
T Consensus 146 ~~~~~dv-e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 146 RCTRVDV-GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TCCGGGH-HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HcCcccc-HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 4567776 888777776643 1 2 34677777888888888444677888888888774 7888888
Q ss_pred HHHHHHHHHHhhhhhcccccccccccccccccch-HHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCC
Q 007775 409 ETYTHLLAALQVQTKTFSSDKRFYKGSANHARSL-ELEVWLDLAFIYINL-SQWHDAEICLSKSEAISSY 476 (590)
Q Consensus 409 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~ 476 (590)
++|+++++++ |. +..+++..|..++.. |++++|..++++++...|.
T Consensus 225 ~~ferAL~Ln----------------------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 225 TAFEHLTRYC----------------------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHC----------------------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhC----------------------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 8888888876 43 266777777777774 7788888888888877666
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.71 E-value=3.5e-07 Score=84.96 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=98.0
Q ss_pred HHHcccCCCcHHHHH--HHHHHHHHcC---ChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 007775 342 MLLKLEGGSNLKGWL--LMARILSAQK---RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (590)
Q Consensus 342 ~~l~~~p~~~~~~~~--~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 416 (590)
++....|.+. .+|- ..|..+...+ ...+|+.+|+++++.+| +.+.++..++.++.......
T Consensus 185 r~~~~~p~~~-~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP--~~a~A~A~la~a~~~~~~~~----------- 250 (372)
T 3ly7_A 185 TLQKILPHRG-ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP--EFTYARAEKALVDIVRHSQH----------- 250 (372)
T ss_dssp HHHHHSCSSG-GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHS-----------
T ss_pred HHhccCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhccC-----------
Confidence 3444556665 5543 4455555543 35788999999999998 77777777777666110000
Q ss_pred HHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 007775 417 ALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKE 496 (590)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 496 (590)
+........ ...+... ..++...|.++.++..++..+...|++++
T Consensus 251 ------------------------~~~~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~ 295 (372)
T 3ly7_A 251 ------------------------PLDEKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDE 295 (372)
T ss_dssp ------------------------CCCHHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHH
T ss_pred ------------------------CCchhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHH
Confidence 000000000 0122221 12345567777777777777777788888
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCH
Q 007775 497 AIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNS 548 (590)
Q Consensus 497 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~ 548 (590)
|+..+++++.++|+ ..++..+|.++.-.|+++ +|++.|.+|+.++|..+
T Consensus 296 A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~--eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 296 SYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNR--EAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHH--HHHHHHHHHHhcCCCcC
Confidence 88888888888764 566777788888888877 88888888888888654
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.68 E-value=2e-07 Score=68.99 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007775 441 SLELEVWLDLAFIYINLSQ---WHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAH 511 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 511 (590)
|.++.++..+|.++...++ .++|...++++++.+|+++.++..+|..++..|+|++|+..|+++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 6678888899988876655 7899999999999999999999999999999999999999999999888874
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=3.7e-07 Score=72.91 Aligned_cols=97 Identities=14% Similarity=0.010 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CChhhHHHHHHHHHHcCCCchHHHH
Q 007775 460 WHDAEICLSKSEAISSYSASKCHATGVLYEKKG---LYKEAIKAFRSALNID-P-AHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 460 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
...+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++.+++..++.+ | ++.++++++|..+.+.|+|+ +|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~--~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE--KAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH--HHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH--HHH
Confidence 456677778888888888999999999999988 6679999999999988 6 56889999999999999999 999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 535 SFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
.+++++++.+|++..+....-.+-
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999988777654443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.53 E-value=5.4e-07 Score=87.69 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=83.8
Q ss_pred HhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C
Q 007775 400 VQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI-----S 474 (590)
Q Consensus 400 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~ 474 (590)
..|++++|+..+++++++.... ..+++|....++.++|.+|..+|+|++|+.++++++.+ .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~--------------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 375 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSV--------------FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP 375 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTT--------------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred hccCHHHHHHHHHHHHHHhhCc--------------cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC
Confidence 4589999999999999986321 33556777889999999999999999999999999875 4
Q ss_pred CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCChhhH
Q 007775 475 SYSA---SKCHATGVLYEKKGLYKEAIKAFRSALNI-----DPAHVPSL 515 (590)
Q Consensus 475 p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 515 (590)
|++| ..++++|.+|..+|++++|+.+|++++++ .|+++.+.
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 5554 45889999999999999999999999874 56666543
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=2.2e-07 Score=74.23 Aligned_cols=89 Identities=12% Similarity=-0.051 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcC---CCchHHHHHHHHHHHhhc-C-CCHHHHHHHHHHHHHhCCCCch
Q 007775 493 LYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLS---DQSNAVIRSFLMAALRLD-G-MNSSAWYNLGLFYKSQGTQSSK 567 (590)
Q Consensus 493 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~l~~A~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~g~~~~~ 567 (590)
....+.+.|.+.+..+|.+..+.+++|+++.+.+ +.+ +++.+++.+++.+ | +..+++++||..+.+.|+ +
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~--~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~---Y 87 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIR--KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE---Y 87 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHH--HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC---H
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHH--HHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC---H
Confidence 3456777888888888899999999999999988 555 9999999999998 7 568999999999999999 9
Q ss_pred HHHHHHHHHHhccccCCCC
Q 007775 568 LEAAECFEAAASLEETAPV 586 (590)
Q Consensus 568 ~~A~~~~~~al~l~p~~~~ 586 (590)
++|.++++++++++|+|..
T Consensus 88 ~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhcCCCCHH
Confidence 9999999999999998853
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=8.6e-07 Score=67.52 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAIS-------SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLI 516 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 516 (590)
+.-++.+|..+...|+|..|+.+|+++++.. +..+.++..+|.++.++|++++|+..+++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4556777888888888888888888777653 233566777777777777777777777777777777766666
Q ss_pred HHH
Q 007775 517 STA 519 (590)
Q Consensus 517 ~l~ 519 (590)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 555
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.44 E-value=1.8e-06 Score=83.99 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=85.5
Q ss_pred HcCChHHHHHHHHHHHhcc-----C-CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccc
Q 007775 364 AQKRYEDAETILNAALDQT-----G-KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSAN 437 (590)
Q Consensus 364 ~~g~~~~A~~~~~~a~~~~-----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 437 (590)
..|+|++|+..+++++++. | ++....++.++|.+|..+|+|++|+.+++++++..... ..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------------lG 375 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH--------------YP 375 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------SC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH--------------cC
Confidence 4578999999999998863 2 12345678899999999999999999999999986432 34
Q ss_pred cccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCHHHH
Q 007775 438 HARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI-----SSYSASKC 481 (590)
Q Consensus 438 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~ 481 (590)
+++|.....++++|.+|..+|++++|+.+|++++++ .|++|.+.
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 556888899999999999999999999999999875 57776553
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.44 E-value=1.2e-06 Score=66.67 Aligned_cols=78 Identities=19% Similarity=0.089 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHH
Q 007775 477 SASKCHATGVLYEKKGLYKEAIKAFRSALNID-------PAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSS 549 (590)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~ 549 (590)
++.-++.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++.++|+++ +|+.+++++++..|+++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~--~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD--KALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHH--HHHHHHHHHHhcCCCCHH
Confidence 46678899999999999999999999999753 345778999999999999998 999999999999999999
Q ss_pred HHHHHHH
Q 007775 550 AWYNLGL 556 (590)
Q Consensus 550 ~~~~l~~ 556 (590)
+..+++.
T Consensus 82 ~~~n~~~ 88 (104)
T 2v5f_A 82 ANGNLKY 88 (104)
T ss_dssp HHHHHHH
T ss_pred HHhhHHH
Confidence 9888773
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.40 E-value=3.1e-06 Score=82.59 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=90.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhccC------CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccc
Q 007775 360 RILSAQKRYEDAETILNAALDQTG------KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (590)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (590)
.-+..+|++++|+..++++++... ++....++..+|.+|..+|+|++|+.++++++......
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~------------ 362 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF------------ 362 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH------------
Confidence 345577899999999999997642 12335678899999999999999999999999886322
Q ss_pred cccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCHHH---HHHHHHHH
Q 007775 434 GSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI-----SSYSASK---CHATGVLY 488 (590)
Q Consensus 434 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~---~~~l~~~~ 488 (590)
..+.+|.....++++|.+|..+|++++|+.+|++++++ .|++|.+ +.+++.+.
T Consensus 363 --lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 363 --FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp --SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred --cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 33556888889999999999999999999999999875 5666554 34454444
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.32 E-value=4.6e-06 Score=81.41 Aligned_cols=119 Identities=17% Similarity=0.062 Sum_probs=93.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHcc-----cCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----C-CCCchHH
Q 007775 324 SLEYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQT-----G-KWEQGEL 390 (590)
Q Consensus 324 a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~-~~~~~~~ 390 (590)
..-+..+|++++|+..++++++. .|+++ ..++..++.+|..+|+|++|+.++++++... + +|.....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33456789999999999999965 34443 2678899999999999999999999999763 2 2345677
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHh
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYIN 456 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 456 (590)
++++|.+|..+|++++|+.+|++++++.... ..+++|....+..+++.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~--------------lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT--------------HGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------TCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--------------cCCCChHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999986321 234556667777778777654
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.00 E-value=6.9e-05 Score=57.47 Aligned_cols=97 Identities=14% Similarity=0.020 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CChhhHHHHHHHHHHcCCCchHHHH
Q 007775 460 WHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKE---AIKAFRSALNID-P-AHVPSLISTAVVLRKLSDQSNAVIR 534 (590)
Q Consensus 460 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~l~~A~ 534 (590)
...+...|.+....++.+..+.+.+|+++.+..+..+ ++.+++..+... | ..-+.++.+|..+.+.|+|+ +|+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~--~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE--KAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH--HHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH--HHH
Confidence 4556677777777778889999999999999887766 999999988876 5 45678999999999999999 999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHH
Q 007775 535 SFLMAALRLDGMNSSAWYNLGLFY 558 (590)
Q Consensus 535 ~~~~~a~~~~p~~~~~~~~l~~~~ 558 (590)
.+++.+++.+|++..+......+-
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999988876555443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.94 E-value=0.00036 Score=54.57 Aligned_cols=127 Identities=11% Similarity=0.010 Sum_probs=96.7
Q ss_pred CchHHHHHHHHHHHHhcCH------hHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCC
Q 007775 386 EQGELLRTKAKVQLVQGQL------KGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQ 459 (590)
Q Consensus 386 ~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 459 (590)
.+++.|..........|+. ++-++.|++++..-|... .......+..|...+.. ...++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--------------~~~wrrYI~LWIrYA~~-~ei~D 75 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--------------YGQNESFARIQVRFAEL-KAIQE 75 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--------------GTTCHHHHHHHHHHHHH-HHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--------------cccHHHHHHHHHHHHHH-HHhcC
Confidence 6777777777777777887 777788888888765331 11224557788888866 56699
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCC
Q 007775 460 WHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQ 528 (590)
Q Consensus 460 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 528 (590)
.++|.+.|+.++......+.+|...|..-.++|+.+.|.+.+.+++.+.|..... ...+..-.+.|..
T Consensus 76 ~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~~ 143 (161)
T 4h7y_A 76 PDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQKK 143 (161)
T ss_dssp GGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCCC
Confidence 9999999999998877779999999999999999999999999999998875443 3333333444443
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.93 E-value=9.4e-05 Score=57.84 Aligned_cols=108 Identities=15% Similarity=-0.050 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 440 RSLELEVWLDLAFIYINLSQW------HDAEICLSKSEAISSYS--------ASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 440 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~a~~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
.|.+++.|..........|+. ++-++.|++++..-|.. ...|...+.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 467778888877777777887 77778888887766553 2334455544 45577778888888877
Q ss_pred ccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 506 NIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
+.....+.+|...|..-.++|+.. .|.+.+.+++.+.|.....
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~--kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVK--KSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHH--HHHHHHHHHhccCCCcHHH
Confidence 776677777777777777777776 8888888888877765443
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.84 E-value=0.00029 Score=54.04 Aligned_cols=91 Identities=13% Similarity=0.021 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHH---HHHHHHHHHccc-CCCcHHHHHHHHHHHHHcCChHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA---AHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAET 373 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~g~~~~A~~ 373 (590)
...+...|.+.. ..++.+.++.+.+|.++....+... ++.+++..++.+ |....+.++.+|..+++.|+|++|..
T Consensus 17 l~~~~~~y~~e~-~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHH-HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 567777888888 7778889999999999999887766 999999999887 53333899999999999999999999
Q ss_pred HHHHHHhccCCCCchHHH
Q 007775 374 ILNAALDQTGKWEQGELL 391 (590)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~ 391 (590)
+++.+++..| ++..+.
T Consensus 96 ~~~~lL~~eP--~n~QA~ 111 (126)
T 1nzn_A 96 YVRGLLQTEP--QNNQAK 111 (126)
T ss_dssp HHHHHHHHCT--TCHHHH
T ss_pred HHHHHHHhCC--CCHHHH
Confidence 9999999999 555444
No 227
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.70 E-value=0.00021 Score=74.79 Aligned_cols=128 Identities=8% Similarity=-0.003 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhc---cCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCcccccCCccccCcch
Q 007775 62 LNRAVELLPELWKLADAPRETIMSYRRALL---PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNI 138 (590)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (590)
....++.+...|++.|++++|..+|.+|.. .|+.||..+++.+.. +|+..|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~------------------------Glck~G~~ 181 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML------------------------GWARQGAF 181 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHH------------------------HHHHHTCH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHH------------------------HHHhCCCH
Confidence 345567777889999999999999977653 477888888775533 25556778
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCH-HHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCChHHHHH
Q 007775 139 EEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDL-SSLATQIEELLP-GIINRKERYHILALCYYGAGEDLVALN 216 (590)
Q Consensus 139 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~e~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~ 216 (590)
++|+.++..| ...+..+|..+|+.+..++++.|+. +.|.++|+++.. +..+|..++..+- ...+.+..++
T Consensus 182 ~eA~~Lf~eM----~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll----~~~eR~~vL~ 253 (1134)
T 3spa_A 182 KELVYVLFMV----KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL----SEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHHH----HHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCC----CHHHHHHHHH
T ss_pred HHHHHHHHHH----HHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhccccc----ChhhHHHHHH
Confidence 8888877544 4456678888888888888888874 677788877653 3344554444332 2223334555
Q ss_pred HHHHh
Q 007775 217 LLRTL 221 (590)
Q Consensus 217 ~~~~~ 221 (590)
..+++
T Consensus 254 ~Vrkv 258 (1134)
T 3spa_A 254 AVHKV 258 (1134)
T ss_dssp HHGGG
T ss_pred HHHHh
Confidence 55555
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.68 E-value=0.00055 Score=55.00 Aligned_cols=114 Identities=19% Similarity=0.130 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc--------HHHHHHHHHHHHHcCChHHHHHHHHHHHhccC------
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--------LKGWLLMARILSAQKRYEDAETILNAALDQTG------ 383 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------ 383 (590)
.+++.-...+...|.|+.|+-....++....++. ..++..+|.+++..++|..|...|++++....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555566666777777766666554332211 13566677777777777777777777654321
Q ss_pred -----------------CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHH
Q 007775 384 -----------------KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEV 446 (590)
Q Consensus 384 -----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (590)
.+.+.++.+.++.|+...+++++|+..++.+ +.....+.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-----------------------p~k~Rt~kv 157 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-----------------------PSRQRTPKI 157 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-----------------------CGGGCCHHH
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-----------------------CchhcCHHH
Confidence 1123478899999999999999999987743 222455677
Q ss_pred HHHHHHHH
Q 007775 447 WLDLAFIY 454 (590)
Q Consensus 447 ~~~la~~~ 454 (590)
...||..|
T Consensus 158 nm~LakLy 165 (167)
T 3ffl_A 158 NMLLANLY 165 (167)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 77777765
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.62 E-value=0.0018 Score=52.00 Aligned_cols=143 Identities=11% Similarity=0.015 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICL 467 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 467 (590)
..+++.-...+...|.|+.|+-....++....++++.... .....++..+|+.++..++|..|...|
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp-------------~~~~~~l~~ladalf~~~eyrrA~~~y 86 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP-------------PQKYQLLVYHADSLFHDKEYRNAVSKY 86 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH-------------HHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4456677788889999999999999988886544333221 234678999999999999999999999
Q ss_pred HHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 007775 468 SKSEAIS---SYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLD 544 (590)
Q Consensus 468 ~~a~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~ 544 (590)
++++... +.++.....++. ...+ ...... +.+.+..+.++.|+.+.++++ +|+..++.+-. .
T Consensus 87 ~qALq~~k~l~k~~s~~~~~~~----~ss~-------p~s~~~-~~e~Elkykia~C~~~l~~~~--~Ai~~Le~Ip~-k 151 (167)
T 3ffl_A 87 TMALQQKKALSKTSKVRPSTGN----SAST-------PQSQCL-PSEIEVKYKLAECYTVLKQDK--DAIAILDGIPS-R 151 (167)
T ss_dssp HHHHHHHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHH--HHHHHHHTSCG-G
T ss_pred HHHHHHHHHHhcCCCccccccc----cCCC-------cccccc-cchHHHHHHHHHHHHHHCCHH--HHHHHHhcCCc-h
Confidence 9987642 222221111110 0000 001111 334566677777777777777 77776544322 2
Q ss_pred CCCHHHHHHHHHHH
Q 007775 545 GMNSSAWYNLGLFY 558 (590)
Q Consensus 545 p~~~~~~~~l~~~~ 558 (590)
...+.+...||..|
T Consensus 152 ~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 152 QRTPKINMLLANLY 165 (167)
T ss_dssp GCCHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHh
Confidence 23566666666654
No 230
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.22 E-value=0.0016 Score=68.41 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=64.2
Q ss_pred cCCccccCcchHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCHHHHHHHHHHHc-CCCCCchHHHHHHHHHHH
Q 007775 128 MGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL-PGIINRKERYHILALCYY 206 (590)
Q Consensus 128 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~-~~~~~~~~~~~~la~~~~ 206 (590)
+..+|+..|..++|..++..+.. +...+..+|..+|+.|...|++.|++++|.+.|+++. .+..+|..+|+.+..++.
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~-m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glc 211 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHG-QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-SHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-HhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 34456667777777666644432 2223455667777777777777777777777776653 344566777777777777
Q ss_pred hCCCh-HHHHHHHHHhhcCCCCCC
Q 007775 207 GAGED-LVALNLLRTLLSGSEDPK 229 (590)
Q Consensus 207 ~~g~~-~~A~~~~~~~l~~~~~p~ 229 (590)
+.|+. ++|.++|++|...+..|+
T Consensus 212 K~G~~~e~A~~Ll~EM~~kG~~PD 235 (1134)
T 3spa_A 212 RQDQDAGTIERCLEQMSQEGLKLQ 235 (1134)
T ss_dssp HHTCCHHHHHHHHHHHHHHTCCSH
T ss_pred hCCCcHHHHHHHHHHHHHcCCCCC
Confidence 77664 566677777776566665
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.14 E-value=0.003 Score=48.53 Aligned_cols=80 Identities=9% Similarity=-0.012 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHH
Q 007775 477 SASKCHATGVLYEKKGLY---KEAIKAFRSALNIDPA-HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWY 552 (590)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~ 552 (590)
++.+.+++|+++.+..+. .+++.+++..++..|. .-+.++.+|..+.+.|+|+ +|+.+.+.+++..|++..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~--~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS--MAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHH--HHHHHHHHHHhhCCCCHHHHH
Confidence 466777777777766543 4577777777776663 3567777777777777777 777777777777777776665
Q ss_pred HHHHHH
Q 007775 553 NLGLFY 558 (590)
Q Consensus 553 ~l~~~~ 558 (590)
....+-
T Consensus 117 Lk~~Ie 122 (134)
T 3o48_A 117 LKSMVE 122 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.04 E-value=0.0055 Score=47.75 Aligned_cols=81 Identities=9% Similarity=-0.004 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHH
Q 007775 475 SYSASKCHATGVLYEKKGLY---KEAIKAFRSALNIDPA-HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSA 550 (590)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~ 550 (590)
..++.+.+++|+++.+..+. .+++.+++..+...|. .-+.++.+|..+.++|+|+ +|+.+.+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~--~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS--MAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHH--HHHHHHHHHHhcCCCcHHH
Confidence 45677888888888877654 4678888888877773 4567888888888888888 8888888888888888776
Q ss_pred HHHHHHH
Q 007775 551 WYNLGLF 557 (590)
Q Consensus 551 ~~~l~~~ 557 (590)
......+
T Consensus 114 ~~Lk~~I 120 (144)
T 1y8m_A 114 GALKSMV 120 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.00 E-value=0.018 Score=44.25 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCC
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 350 (590)
.+.+.++.++.+... .....+++.+++..+ +..|. .-+.++.+|..+.+.|+|++|.++.+.+++..|++
T Consensus 41 qt~F~yAw~Lv~S~~--------~~d~~~GI~LLe~l~-~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 41 QSRFNYAWGLIKSTD--------VNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHHHSSC--------HHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred hhHHHHHHHHHcCCC--------HHHHHHHHHHHHHHH-hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 455555555544433 111567888888877 66663 45778888888888888888888888888888887
Q ss_pred cHHHHHHHH
Q 007775 351 NLKGWLLMA 359 (590)
Q Consensus 351 ~~~~~~~la 359 (590)
. .+.....
T Consensus 112 ~-QA~~Lk~ 119 (134)
T 3o48_A 112 K-QVGALKS 119 (134)
T ss_dssp H-HHHHHHH
T ss_pred H-HHHHHHH
Confidence 7 5554433
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.96 E-value=0.017 Score=44.97 Aligned_cols=72 Identities=10% Similarity=-0.014 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhh
Q 007775 443 ELEVWLDLAFIYINLSQWH---DAEICLSKSEAISSY-SASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPS 514 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~---~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 514 (590)
...+.+++|.++.+..+.+ +++.+++..+...|. .-+.++.+|..+.+.|+|++|.++.+..++..|++..+
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 3455555555555544332 455555555555553 24455555556666666666666666666666655443
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.94 E-value=0.43 Score=48.48 Aligned_cols=244 Identities=11% Similarity=0.001 Sum_probs=128.6
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHH--HHHHHHhccCCCCchHH
Q 007775 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET--ILNAALDQTGKWEQGEL 390 (590)
Q Consensus 313 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~ 390 (590)
.|.+...-...+......|+..+|.....++.......+ ..+..+...+...|....... -+..++..+ +...
T Consensus 98 ~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p-~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~----~~~~ 172 (618)
T 1qsa_A 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP-NACDKLFSVWRASGKQDPLAYLERIRLAMKAG----NTGL 172 (618)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC-THHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----CHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 367777777788888889998888888887776665555 666666666666555443322 222222221 1211
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
...++... +.-..++......+..+|........ .....+. .......+.......+.+.|...+...
T Consensus 173 a~~l~~~l---~~~~~~~a~~~~al~~~p~~~~~~~~--------~~~~~~~-~~~~~~~~~~rlar~d~~~A~~~~~~~ 240 (618)
T 1qsa_A 173 VTVLAGQM---PADYQTIASAIISLANNPNTVLTFAR--------TTGATDF-TRQMAAVAFASVARQDAENARLMIPSL 240 (618)
T ss_dssp HHHHHHTC---CGGGHHHHHHHHHHHHCGGGHHHHHH--------HSCCCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHhC---CHHHHHHHHHHHHHHhChHhHHHHHh--------ccCCChh-hHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 11111111 00011111111111122211110000 0000011 112223333344455788888888776
Q ss_pred HhcCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC
Q 007775 471 EAISSYSASK----CHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM 546 (590)
Q Consensus 471 ~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~ 546 (590)
....+-+... +..++.-+...+...++...+.+.....+++. ....++......|++. .|..+|..+-...+.
T Consensus 241 ~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~--~a~~~~~~l~~~~~~ 317 (618)
T 1qsa_A 241 AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRR--GLNTWLARLPMEAKE 317 (618)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHH--HHHHHHHHSCTTGGG
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHH--HHHHHHHHccccccc
Confidence 5433333222 22233333334435567777776654443333 2333334445678888 888888776554445
Q ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 547 NSSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
.+...+.+|.++...|+ .++|..+|+++..
T Consensus 318 ~~r~~YW~~ra~~~~g~---~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 318 KDEWRYWQADLLLERGR---EAEAKEILHQLMQ 347 (618)
T ss_dssp SHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCC---HHHHHHHHHHHhc
Confidence 67778889999999999 9999999888865
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.026 Score=58.33 Aligned_cols=61 Identities=16% Similarity=0.006 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSA 504 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 504 (590)
...+...+..+...|+++-|+.+.++++...|.+...|..|+.+|...|+|+.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4567777888999999999999999999999999999999999999999999999888876
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.9 Score=44.26 Aligned_cols=259 Identities=13% Similarity=0.102 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHH----HcCC
Q 007775 298 QAKALQALVSAARST------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS----AQKR 367 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~----~~g~ 367 (590)
++.|++.+.... +. .+....+...+..++...|+++...+.+.-..+...... .+...+..... ....
T Consensus 32 ~~~a~e~ll~lE-K~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 32 CNSALDQLLVLE-KKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHH-HHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH-HHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCCc
Confidence 777877764443 22 133457788899999999999998887776665544433 33333322221 1222
Q ss_pred hHHHHHHHHHHHhcc----CC--C---CchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccccccc
Q 007775 368 YEDAETILNAALDQT----GK--W---EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANH 438 (590)
Q Consensus 368 ~~~A~~~~~~a~~~~----~~--~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (590)
.+... ....++.- .. + ....+...++.++...|++.+|...+.....-.. ...
T Consensus 110 ~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~----------------~~~ 171 (445)
T 4b4t_P 110 LDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY----------------GSM 171 (445)
T ss_dssp THHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----------------SSS
T ss_pred hhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH----------------hcc
Confidence 22211 11222211 10 0 1345667899999999999999999998765421 111
Q ss_pred ccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh---cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccC---
Q 007775 439 ARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA---ISSYSA----SKCHATGVLYEKKGLYKEAIKAFRSALNID--- 508 (590)
Q Consensus 439 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 508 (590)
+.....+.+.....+|...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|-.+|..++...
T Consensus 172 ~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 172 EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 2234477899999999999999999999998742 223333 346778999999999999999999887532
Q ss_pred --CCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhccc
Q 007775 509 --PAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGM--NSSAWYNLGLFYKSQ--GTQSSKLEAAECFEAAASLE 581 (590)
Q Consensus 509 --p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~--g~~~~~~~A~~~~~~al~l~ 581 (590)
|.........+.++.-+..... .--....+... ++. ....+..+..++... .+ |+...+.|...+.-+
T Consensus 252 ~d~~~~~~~L~~~v~~~iLa~~~~-~~~~ll~~~~~-~~~~~~l~~~~~L~k~f~~~~L~~---~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 252 SDEAKWKPVLSHIVYFLVLSPYGN-LQNDLIHKIQN-DNNLKKLESQESLVKLFTTNELMR---WPIVQKTYEPVLNED 325 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCSS-TTHHHHHSHHH-HSSCHHHHHHHHHHHHHHHCCSSS---HHHHHHHTCSSTTTC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHhh-cccccccHHHHHHHHHHHhchHhh---hHHHHHHHHHHhccc
Confidence 2111112222222222222210 11222222222 222 234566677776643 45 777777776655443
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.22 E-value=0.86 Score=43.17 Aligned_cols=174 Identities=9% Similarity=-0.025 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHH-----HHHHHHHHHH-ccCHHHHHHHHHHHHc
Q 007775 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI-----LYRLSLEYAE-QRKLNAAHYYAKMLLK 345 (590)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~~l~ 345 (590)
.+.+.+|..|...|+ .++-..++.... ..-+.-+.+ ...+...+.. .+..+.-++.+..+++
T Consensus 20 ~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (394)
T 3txn_A 20 QGILQQGELYKQEGK-----------AKELADLIKVTR-PFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIE 87 (394)
T ss_dssp HHHHHHHHHHHHHTC-----------HHHHHHHHHHTT-TGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-----------HHHHHHHHHHHH-HHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 478889999999998 777777666554 322222222 2223333322 2445555666666665
Q ss_pred ccCCCcHHHH------HHHHHHHHHcCChHHHHHHHHHHHhccCCCC----chHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 007775 346 LEGGSNLKGW------LLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (590)
Q Consensus 346 ~~p~~~~~~~------~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l 415 (590)
...... ..| ..++.+|...|+|.+|.+.+.+..+.....+ -.+++..-..+|...+++.++...+.++.
T Consensus 88 ~a~~~~-r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 88 WAKQEK-RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 433322 223 3789999999999999999999887644322 25667778889999999999999999998
Q ss_pred HHHhhhhhcccccccccccccccccc-hHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcC
Q 007775 416 AALQVQTKTFSSDKRFYKGSANHARS-LELEVWLDLAFIYI-NLSQWHDAEICLSKSEAIS 474 (590)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 474 (590)
..... ....| ..+.+...-|..+. ..++|.+|..+|-+++...
T Consensus 167 ~~~~a----------------i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 167 TTANA----------------IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHH----------------SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hhhcc----------------CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 77421 10112 23456666778888 8999999999999887543
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.16 E-value=0.64 Score=49.11 Aligned_cols=285 Identities=14% Similarity=0.090 Sum_probs=155.4
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCCC---ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---C--CcchhhHH
Q 007775 202 ALCYYGAGEDLVALNLLRTLLSGSEDPK---CLPALLIASKICGEYPDLAEEGATFASRALECLGD---G--CDQMESTA 273 (590)
Q Consensus 202 a~~~~~~g~~~~A~~~~~~~l~~~~~p~---~~~~~~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~---~--~~~~~~~~ 273 (590)
+......|+.++++..+.+.+......+ ...+.+.++.++ .|..++++.++...+..... + .+..+.-+
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~---ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gA 457 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIY---AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGA 457 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT---TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHcCccccccccccHHHHHHH
Confidence 3445677888899999998883110111 233455555443 23334788888888775431 0 12233346
Q ss_pred HHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD--LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
-..+|.++...++ +++.+.+...+ ..+... ..+-+.+|.++.-.|+-+....++..+.+...+..
T Consensus 458 aLGLGla~~GS~~------------eev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~v 524 (963)
T 4ady_A 458 SLGIGLAAMGSAN------------IEVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI 524 (963)
T ss_dssp HHHHHHHSTTCCC------------HHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHhcCCCC------------HHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHH
Confidence 6677777776665 46777777777 433211 13455678888888888777777776665433222
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccc
Q 007775 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (590)
Q Consensus 352 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 431 (590)
.-...+|..+...|+.+.+..+.+..............-..+|..|...|+...-..++..+..-.
T Consensus 525 -rR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~------------- 590 (963)
T 4ady_A 525 -TRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS------------- 590 (963)
T ss_dssp -HHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-------------
T ss_pred -HHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-------------
Confidence 333344455557788888887777765533201112233456777778888654444555554321
Q ss_pred cccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCC-HHHHHHHHHHHhccC
Q 007775 432 YKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEK--KGL-YKEAIKAFRSALNID 508 (590)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~--~g~-~~~A~~~~~~al~~~ 508 (590)
..+..-...+|......|+.+.+...+..... ..++.+....+.++.. .|. ..+++..+.+... +
T Consensus 591 ---------~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D 658 (963)
T 4ady_A 591 ---------NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-D 658 (963)
T ss_dssp ---------CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-C
T ss_pred ---------cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-C
Confidence 12223233334444455666555555543333 2345555444433332 222 2678888887764 4
Q ss_pred CCCh---hhHHHHHHHHHHcCCC
Q 007775 509 PAHV---PSLISTAVVLRKLSDQ 528 (590)
Q Consensus 509 p~~~---~~~~~l~~~~~~~g~~ 528 (590)
+++. .+...||.+.....+-
T Consensus 659 ~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 659 PVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp SSHHHHHHHHHHHHHHSTTCCTT
T ss_pred CCHHHHHHHHHHHHHHhcCCccc
Confidence 4332 2445566555554443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.044 Score=56.66 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHH--HHhhchhhccChHHHHHHHHHHHHHHHHHHH-------hhCCCC
Q 007775 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGI--SLSAQSKVAITDFDRATRQAKALQALVSAAR-------STNMRD 316 (590)
Q Consensus 246 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------~~~p~~ 316 (590)
...+.|+..+++....+|... .++.... +....+.. --+|+..+.+.++ ...+.+
T Consensus 263 ~~~~~a~~~le~L~~~~p~~~------~~~~~~~i~~~~~~~~~----------Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 263 SLVDFTIDYLKGLTKKDPIHD------IYYKTAMITILDHIETK----------ELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp GGHHHHHHHHHHHHHHCGGGH------HHHHHHHHHHHTTCGGG----------HHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHHHhhCCchh------HHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 346789999999988888543 2222111 11111110 2345555554441 122233
Q ss_pred ----------hHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007775 317 ----------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (590)
Q Consensus 317 ----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 378 (590)
...+...+..+...|+++-|+++.++++...|... .+|..|+.+|...|+|+.|+-.++.+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF-~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSF-ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh-HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 23455667788899999999999999999999999 99999999999999999999888776
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.75 E-value=0.28 Score=43.07 Aligned_cols=121 Identities=11% Similarity=-0.066 Sum_probs=88.7
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHH
Q 007775 453 IYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAV 532 (590)
Q Consensus 453 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~ 532 (590)
.+.+.|+.++|+......++.+|.+......+..+++-.|+++.|.+.++.+.+++|+....-..+-.+. .
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI---------~ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV---------K 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH---------H
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH---------H
Confidence 4567899999999999999999999999999999999999999999999999999998654322211110 2
Q ss_pred HHHHHHHHHh-----hcCCCHHHHHH---HHHHHHHhCCCCchHHHHHHHHHHhccccCCC
Q 007775 533 IRSFLMAALR-----LDGMNSSAWYN---LGLFYKSQGTQSSKLEAAECFEAAASLEETAP 585 (590)
Q Consensus 533 A~~~~~~a~~-----~~p~~~~~~~~---l~~~~~~~g~~~~~~~A~~~~~~al~l~p~~~ 585 (590)
|+..=.+++. ..+..+..|.. -+......|+ .++|.+.-.++++..|..+
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~---~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCcccC
Confidence 2222222222 12233444543 3555666799 9999999999998877654
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.71 E-value=0.74 Score=49.10 Aligned_cols=178 Identities=17% Similarity=0.077 Sum_probs=98.7
Q ss_pred HHHccCHHHHHH-HHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHh
Q 007775 327 YAEQRKLNAAHY-YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (590)
Q Consensus 327 ~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~ 405 (590)
....+++++|.+ ++ ..-|+ . .....++..+...|.+++|++..+ +.. ....+....|+++
T Consensus 609 ~~~~~~~~~a~~~~l----~~i~~-~-~~~~~~~~~l~~~~~~~~a~~~~~----------~~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVL----PNVEG-K-DSLTKIARFLEGQEYYEEALNISP----------DQD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTG----GGCCC-H-HHHHHHHHHHHHTTCHHHHHHHCC----------CHH---HHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHH----hcCCc-h-HHHHHHHHHHHhCCChHHheecCC----------Ccc---hheehhhhcCCHH
Confidence 345677777765 33 11110 1 233566666777777777765442 111 1223456678888
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CCCC
Q 007775 406 GAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI--------SSYS 477 (590)
Q Consensus 406 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~ 477 (590)
+|.+..+. ..+...|..+|..+.+.++++.|+.+|.++-.. ...+
T Consensus 670 ~A~~~~~~---------------------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 670 LARDLLTD---------------------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN 722 (814)
T ss_dssp HHHHHHTT---------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHh---------------------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC
Confidence 77776431 233567888888888888888888888775221 1334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC---HHHHHHH
Q 007775 478 ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN---SSAWYNL 554 (590)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~---~~~~~~l 554 (590)
.+.+..++......|++..|...|.+.= -......+|.+.++++ +|..+.++ ..|.. +.+....
T Consensus 723 ~~~~~~~~~~a~~~~~~~~A~~~~~~~g--------~~~~a~~~~~~~~~~~--~A~~lA~~---~~~~~~~i~~~~~~~ 789 (814)
T 3mkq_A 723 KEGLVTLAKDAETTGKFNLAFNAYWIAG--------DIQGAKDLLIKSQRFS--EAAFLGST---YGLGDNEVNDIVTKW 789 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT--------CHHHHHHHHHHTTCHH--HHHHHHHH---TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHcC--------CHHHHHHHHHHcCChH--HHHHHHHH---hCCChHHHHHHHHHH
Confidence 4445555666666666666665554421 1223344556666666 66654432 33333 2444455
Q ss_pred HHHHHHhCC
Q 007775 555 GLFYKSQGT 563 (590)
Q Consensus 555 ~~~~~~~g~ 563 (590)
+.-+...|+
T Consensus 790 ~~~L~~~~~ 798 (814)
T 3mkq_A 790 KENLILNGK 798 (814)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 555666666
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.45 Score=38.99 Aligned_cols=47 Identities=9% Similarity=-0.137 Sum_probs=40.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 454 YINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 454 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
....|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 46789999999887765 568889999999999999999999998863
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.21 Score=40.96 Aligned_cols=110 Identities=17% Similarity=0.105 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHH
Q 007775 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (590)
Q Consensus 315 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~l 394 (590)
.|++..+.++ ...|+++.|.+..+.. ++. ..|..+|......|+++-|..+|.++-.. ..+
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~-~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------~~L 66 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDS-ITWERLIQEALAQGNASLAEMIYQTQHSF----------DKL 66 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------HHH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCH-HHHHHHHHHHHHcCChHHHHHHHHHhCCH----------HHH
Confidence 4555555554 5789999999887765 445 78999999999999999999999885332 245
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKS 470 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 470 (590)
..+|...|+.+.-...-+.+.... -++....++...|+++++++.|.+.
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~~g---------------------------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQTRE---------------------------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHCc---------------------------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 556667777655443333332221 1233345567788888888888654
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.45 E-value=1.8 Score=40.97 Aligned_cols=124 Identities=10% Similarity=-0.023 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHcCCCCc-chhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCC-CC----hHHHHH
Q 007775 249 EEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM-RD----LSILYR 322 (590)
Q Consensus 249 ~~A~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p-~~----~~~~~~ 322 (590)
+.-++.....++...+... .+....-..+|..|...|+ +.+|...+.+..+.... ++ .+++..
T Consensus 76 ~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~-----------y~~a~~~i~~l~~~~~~~dd~~~llev~ll 144 (394)
T 3txn_A 76 GIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTAL-----------YTEALALGAQLLRELKKLDDKNLLVEVQLL 144 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTSSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 3334444455543333221 2233355688999999999 99999999888733322 11 256677
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccc---CCCc---HHHHHHHHHHHH-HcCChHHHHHHHHHHHhccC
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLE---GGSN---LKGWLLMARILS-AQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~---p~~~---~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~ 383 (590)
...+|...+++.++...+.++.... +.++ ......-|.++. ..++|.+|...|-++++...
T Consensus 145 e~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 145 ESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 7888899999999999998886432 1111 133445577777 78999999999988876554
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.29 E-value=2.9 Score=42.41 Aligned_cols=197 Identities=10% Similarity=-0.038 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHhhCCCChHH----HHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHH
Q 007775 298 QAKALQALVSAARSTNMRDLSI----LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 373 (590)
.+.|...+.... ...+-+... +..++......+...++...+.+.....+++. .....+....+.|+++.|..
T Consensus 230 ~~~A~~~~~~~~-~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 230 AENARLMIPSLA-QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS--LIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH--HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhh-hccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH--HHHHHHHHHHHCCCHHHHHH
Confidence 678888887775 433333322 22333334444535677777777665444433 34445555667899999999
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcc------ccccccccccccc--ccchHHH
Q 007775 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF------SSDKRFYKGSANH--ARSLELE 445 (590)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~ 445 (590)
+|..+-.... ......+-+|..+...|+.++|...|+++... ...-.+ +............ .......
T Consensus 307 ~~~~l~~~~~--~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~ 382 (618)
T 1qsa_A 307 WLARLPMEAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQQ--RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQG 382 (618)
T ss_dssp HHHHSCTTGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHS
T ss_pred HHHHcccccc--ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CChHHHHHHHHcCCCCCCCCCCCChhHHhhhccC
Confidence 9988655433 44666778999999999999999999988752 111100 0000000000000 0000111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRS 503 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 503 (590)
.-...+..+...|....|...+....... ++.-...++.+....|.++.++....+
T Consensus 383 ~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 383 PEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 23455677889999999998888877642 345556778888888988888766544
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.25 E-value=0.13 Score=49.28 Aligned_cols=62 Identities=13% Similarity=-0.032 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
..+...++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++-
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999998764
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.22 E-value=0.32 Score=51.97 Aligned_cols=131 Identities=18% Similarity=0.100 Sum_probs=83.4
Q ss_pred HHHHHcCChHHHHH-HHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccccccc
Q 007775 360 RILSAQKRYEDAET-ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANH 438 (590)
Q Consensus 360 ~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (590)
......+++++|.+ ++.. - .+.......+..+...|.+++|++..+.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i---~~~~~~~~~~~~l~~~~~~~~a~~~~~~------------------------- 654 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----V---EGKDSLTKIARFLEGQEYYEEALNISPD------------------------- 654 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----C---CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------------------------
T ss_pred hHHHHhCCHHHHHHHHHhc----C---CchHHHHHHHHHHHhCCChHHheecCCC-------------------------
Confidence 34456788888876 4311 0 1012235677778888988888765431
Q ss_pred ccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCC
Q 007775 439 ARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNI--------DPA 510 (590)
Q Consensus 439 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~ 510 (590)
+... .......|++++|.++.+. .+++..|..+|..+.+.|+++.|+++|.++-.. ...
T Consensus 655 -----~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~ 721 (814)
T 3mkq_A 655 -----QDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN 721 (814)
T ss_dssp -----HHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred -----cchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC
Confidence 1111 2345678999999987643 357889999999999999999999999986321 123
Q ss_pred ChhhHHHHHHHHHHcCCCchHHHHHHH
Q 007775 511 HVPSLISTAVVLRKLSDQSNAVIRSFL 537 (590)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~l~~A~~~~ 537 (590)
+...+..++......|++. .|...|
T Consensus 722 ~~~~~~~~~~~a~~~~~~~--~A~~~~ 746 (814)
T 3mkq_A 722 NKEGLVTLAKDAETTGKFN--LAFNAY 746 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHcCchH--HHHHHH
Confidence 3344445555555555554 444443
No 249
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.73 Score=44.96 Aligned_cols=87 Identities=14% Similarity=0.004 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChh
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYS-------ASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVP 513 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 513 (590)
.....+++.+-..|...+.+++|..+..++. .|.+ ...++.+|.++.-+++|.+|.+++..|+...|.+..
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 4557789999999999999999999999985 4432 345778899999999999999999999998876532
Q ss_pred -------hHHHHHHHHHHcCCCc
Q 007775 514 -------SLISTAVVLRKLSDQS 529 (590)
Q Consensus 514 -------~~~~l~~~~~~~g~~~ 529 (590)
++..+..+-.-+|+..
T Consensus 306 a~gfr~~a~K~lI~V~LLlG~iP 328 (523)
T 4b4t_S 306 SLGFLQQSNKLHCCIQLLMGDIP 328 (523)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhhHHHHHHHHHHhHHhhcCCCC
Confidence 2222333333467765
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.22 E-value=0.23 Score=47.47 Aligned_cols=112 Identities=13% Similarity=-0.011 Sum_probs=66.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccCCCChhhHHHHHHHHHHcCCC
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEA-IKAFRSALNIDPAHVPSLISTAVVLRKLSDQ 528 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 528 (590)
.+......|+.+.|...+++++.+....+-.-. . ...+-.+ ...+++.. ..+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~--~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--R-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--T-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC--C-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCH
Confidence 344445678999999999999987643311000 0 0111111 11111111 12344566666777777
Q ss_pred chHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 007775 529 SNAVIRSFLMAALRLDGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAAS 579 (590)
Q Consensus 529 ~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al~ 579 (590)
. +++..+..++..+|-+..+|..+..++...|+ ..+|++.|+++.+
T Consensus 188 ~--~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 S--AVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKT 233 (388)
T ss_dssp H--HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 6 77777777777777777777777777777777 7777777766543
No 251
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.99 E-value=0.13 Score=50.47 Aligned_cols=80 Identities=14% Similarity=0.078 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 007775 445 EVWLDLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK 524 (590)
Q Consensus 445 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 524 (590)
..+..+|++......++.|..+|.+|..+.|.+...++.+|.+....|+.-+|+-+|-+++......+.+..++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999998777788888888877765
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.92 E-value=0.78 Score=40.28 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=42.6
Q ss_pred HHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 007775 327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 327 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 383 (590)
..+.|+.++|+......++.+|.+. .....+..+++-.|+++.|.+.++.+.+++|
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da-~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDA-SLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 4566777777777777777777777 7777777777777777777777777777776
No 253
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.92 E-value=1.1 Score=35.75 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH--cc--c-
Q 007775 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL--KL--E- 347 (590)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--~~--~- 347 (590)
-...++.++.-.|. +..++-.+.+ -+...+.+.-+.+|....++..|+..++..+ +. +
T Consensus 35 Y~lL~~I~LyyngE-----------Y~R~Lf~L~~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~ 97 (242)
T 3kae_A 35 YRMLMSIVLYLNGE-----------YTRALFHLHK------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDP 97 (242)
T ss_dssp THHHHHHHHHHTTC-----------HHHHHHHHHT------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCC
T ss_pred HHhhhhhhhhhcch-----------HhHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 44556666777777 7777655432 2445677778888888899999999888888 22 2
Q ss_pred ------------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 007775 348 ------------GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (590)
Q Consensus 348 ------------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 383 (590)
|.+..-.+..+|.++...|+.++|+.++.......+
T Consensus 98 ~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 98 DVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp CCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 223323456677778888888888888877777665
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.72 E-value=1.3 Score=35.44 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=72.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhcC--CCC--------
Q 007775 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG--SED-------- 227 (590)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~-------- 227 (590)
|..+..-..+++++.-.|++..+.-.+.. .+...+.+....||....++..|+..++..+.. ..+
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 34445555677888899999988877654 256677788899999999999999999999932 233
Q ss_pred -----CCChHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Q 007775 228 -----PKCLPAL-LIASKICGEYPDLAEEGATFASRALECLGD 264 (590)
Q Consensus 228 -----p~~~~~~-~~~a~~~~~~~~~~~~A~~~~~~~l~~~~~ 264 (590)
|.+.... ...+.+ +.+.|..++|+.++.......|-
T Consensus 105 ~ffvd~~DkEfFy~l~a~l-ltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDL-CTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred eeeeccchHHHHHHHHHHH-HHHhcCHHHhhhHhhhhcCCccc
Confidence 3343433 344544 45667888999999998887774
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.68 E-value=1.6 Score=46.17 Aligned_cols=279 Identities=11% Similarity=0.004 Sum_probs=150.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHhhchhhccChHHHHHHHHHHHHHHHHHHHhhCC---C---Ch
Q 007775 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM---R---DL 317 (590)
Q Consensus 244 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~p---~---~~ 317 (590)
..++.++++..+...+.....+......-+.+.+|.++...++ +++..+...+ ..+. . +.
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------------~~~~lL~~~L-~~~~~~~~~~~~~ 451 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------------DTTDYLKNII-VENSGTSGDEDVD 451 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------------HHHHHHHHHH-HHHSSCCSCHHHH
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------------HHHHHHHHHH-cCccccccccccH
Confidence 3445556666665544321123334555678888877776665 5777777766 4322 1 11
Q ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHH
Q 007775 318 ----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (590)
Q Consensus 318 ----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 392 (590)
.+...+|.++.-.++ +++...+..++..+.... ..+-..+|.++.-.|+-+-...++..+.+... +...-..
T Consensus 452 ~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~--e~vrR~a 528 (963)
T 4ady_A 452 VLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQH--GNITRGL 528 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSC--HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCc--HHHHHHH
Confidence 344567777766665 456666777665332211 13555677888888887777777776665432 3333333
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007775 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA 472 (590)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 472 (590)
.+|..+...|+.+.+-.+.+.+..... ......+-..+|..|...|+...-..++..+..
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~~d--------------------p~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLASDE--------------------SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHCSC--------------------HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 444455567888777666665443210 011233455678888899997655557777665
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHH--cCCCchHHHHHHHHHHHhhcCCCH--
Q 007775 473 ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRK--LSDQSNAVIRSFLMAALRLDGMNS-- 548 (590)
Q Consensus 473 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~l~~A~~~~~~a~~~~p~~~-- 548 (590)
-..++..-...+|......|+.+.+...+..... ..++.+.+..+.++.. .|... .+++..+.+... ++++.
T Consensus 589 d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~d~~Vr 664 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DPVDFVR 664 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CSSHHHH
T ss_pred CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CCCHHHH
Confidence 3322332223333334445555444444443332 2345555544444433 34433 268887777753 44332
Q ss_pred -HHHHHHHHHHHHhCC
Q 007775 549 -SAWYNLGLFYKSQGT 563 (590)
Q Consensus 549 -~~~~~l~~~~~~~g~ 563 (590)
.+...||.+.....+
T Consensus 665 q~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 665 QAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHHHhcCCcc
Confidence 244455655544433
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.63 E-value=4.9 Score=44.59 Aligned_cols=199 Identities=11% Similarity=-0.055 Sum_probs=123.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC-----------------
Q 007775 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG----------------- 383 (590)
Q Consensus 321 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----------------- 383 (590)
..+...+...+.++-+.+ .+...|.++ ...+.+|.++...|++++|..+|+++...-.
T Consensus 816 ~~l~~~l~~~~~~~~~~~----l~~~~~~~~-~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQ----LIGWLNSDP-IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHH----HHHHSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHH----HhhhccCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 345555666777766554 334456666 6678899999999999999999988642210
Q ss_pred ----CCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCC
Q 007775 384 ----KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQ 459 (590)
Q Consensus 384 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 459 (590)
....+..|.....++.+.+.++.+++..+.+++..+.+ +.......|..+-..+...|+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-----------------~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-----------------DEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-----------------CHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-----------------ChhhHHHHHHHHHHHHHhhCC
Confidence 00123456777888899999999999999998864211 111123478888899999999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHH-HHhcc-CCCC-hhhHHHHHHHHHH
Q 007775 460 WHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKE------------AIKAFR-SALNI-DPAH-VPSLISTAVVLRK 524 (590)
Q Consensus 460 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~------------A~~~~~-~al~~-~p~~-~~~~~~l~~~~~~ 524 (590)
|++|...+...-... .....+..+...+++.|..+. -...+. +|-.. ++.+ +..|..|-..+..
T Consensus 954 ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~ 1032 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYK 1032 (1139)
T ss_dssp SGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhc
Confidence 999988776543221 224455555555555554432 222221 11111 2222 3334444444556
Q ss_pred cCCCchHHHHHHHHHHHhh
Q 007775 525 LSDQSNAVIRSFLMAALRL 543 (590)
Q Consensus 525 ~g~~~l~~A~~~~~~a~~~ 543 (590)
.|++. ..|..+|+.+.++
T Consensus 1033 r~dyR-~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1033 HQNYR-DAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHTTS-CHHHHHHHHHHHH
T ss_pred cCChH-HHHHHHHHHHHHh
Confidence 67776 4777788887765
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.079 Score=51.59 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=60.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHh---c--------CCCCHHHHHHHHHHHHHcCCHHHHH--------------HHHHHH-
Q 007775 451 AFIYINLSQWHDAEICLSKSEA---I--------SSYSASKCHATGVLYEKKGLYKEAI--------------KAFRSA- 504 (590)
Q Consensus 451 a~~~~~~g~~~~A~~~~~~a~~---~--------~p~~~~~~~~l~~~~~~~g~~~~A~--------------~~~~~a- 504 (590)
-..+...+++++|..+-...+. + ++-...+|+..+.++...|+..+.. ..++.+
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3445677889988887765541 1 2333567888888888877765432 122222
Q ss_pred hccCCC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCC-------HHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 007775 505 LNIDPA-HVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMN-------SSAWYNLGLFYKSQGTQSSKLEAAECFEA 576 (590)
Q Consensus 505 l~~~p~-~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~-------~~~~~~l~~~~~~~g~~~~~~~A~~~~~~ 576 (590)
+..++. ....++.+-..|...+.++ +|..+..++. .|.. ...++.+|.++.-.++ |.+|.+++..
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~--qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~---Y~eA~~~L~~ 295 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVD--SASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD---YSTANEYIIA 295 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCST--THHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred cccCcchhHHHHHHHHHHHHccCcHH--HHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Confidence 122322 2567888999999999999 9999999885 4432 3456778999999999 9999999999
Q ss_pred HhccccCCCC
Q 007775 577 AASLEETAPV 586 (590)
Q Consensus 577 al~l~p~~~~ 586 (590)
|+...|.+..
T Consensus 296 A~rkap~~~~ 305 (523)
T 4b4t_S 296 AIRKAPHNSK 305 (523)
T ss_dssp HTSSCSCSSS
T ss_pred HHHhCCcchh
Confidence 9999887654
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.61 Score=45.25 Aligned_cols=62 Identities=18% Similarity=0.050 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccc--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007775 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLE--GGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (590)
Q Consensus 319 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 380 (590)
++..+|..|...|++++|.+.|.++.... +.+..+.+....+++...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44455555555555555555555544322 222224444444444444444444444444433
No 259
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.07 E-value=0.23 Score=48.88 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 007775 480 KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAWYNLGLFYK 559 (590)
Q Consensus 480 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 559 (590)
.+..+|.+......++.|..+|.+|..+.|++...++.||.+....|+.- +|.-+|.+++......+.++.++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l--~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHL--TTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHH--HHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccH--HHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999987 8999999999876667888888888876
Q ss_pred Hh
Q 007775 560 SQ 561 (590)
Q Consensus 560 ~~ 561 (590)
+.
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.38 Score=46.71 Aligned_cols=98 Identities=14% Similarity=0.026 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007775 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSK 469 (590)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 469 (590)
++..+|..|...|++++|.+.|.++....... ....+.+..+..++...+++..+...+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-------------------~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIST-------------------GAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-------------------CSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44455555555555555555555555443110 22244555555555555555555555555
Q ss_pred HHhcCC--CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 470 SEAISS--YSAS----KCHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 470 a~~~~p--~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
+..... .++. .....|.++...++|.+|...|-.++.
T Consensus 194 a~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 194 VNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 533211 1111 122334444555566666555555443
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.25 E-value=6.8 Score=35.90 Aligned_cols=69 Identities=13% Similarity=-0.039 Sum_probs=41.1
Q ss_pred CCCchHHHHHHHHHHHhCCChHHHHHHHHHhh--------------cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007775 191 IINRKERYHILALCYYGAGEDLVALNLLRTLL--------------SGSEDPKCLPALLIASKICGEYPDLAEEGATFAS 256 (590)
Q Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------------~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~ 256 (590)
...+++.+..+|..|++.+++.+|...|--.- .....|.....+...+-+.+...++...|...+.
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~ 211 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYR 211 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34677888888888888888888876652100 0011234455555555555556666767766555
Q ss_pred HHH
Q 007775 257 RAL 259 (590)
Q Consensus 257 ~~l 259 (590)
...
T Consensus 212 ~f~ 214 (336)
T 3lpz_A 212 IFT 214 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 262
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.19 E-value=1.5e-05 Score=75.39 Aligned_cols=223 Identities=11% Similarity=0.053 Sum_probs=134.2
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHH
Q 007775 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (590)
Q Consensus 315 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~l 394 (590)
+.+.+|..+|.++...+...+|++.|-++ .+|. .+.....+..+.|++++-++++..+-+.. ..+.+-..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps----~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteL 122 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS----SYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETEL 122 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC----SSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHH
Confidence 45688999999999999999999887654 3343 44456667778899999999988877664 334444567
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccccccccc---ccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007775 395 AKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKG---SANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSE 471 (590)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 471 (590)
..+|.+.++..+=.+.+. .|+..+....+...+.+ .+....-.+..-|..|+.++..+|+|..|++.-+++
T Consensus 123 i~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA- 196 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA- 196 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC-
T ss_pred HHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 778888777654222211 00000000000000000 000000111222344555555556665555544433
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCHHHH
Q 007775 472 AISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDGMNSSAW 551 (590)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p~~~~~~ 551 (590)
+++.+|-.....+...+.+.-|..+--..+ ..|+. +-.+...|...|-++ +-+..++..+.+........
T Consensus 197 ----ns~ktWKeV~~ACvd~~EfrLAqicGLniI-vhade---L~elv~~YE~~G~f~--ELIsLlEaglglErAHmGmF 266 (624)
T 3lvg_A 197 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---LEELINYYQDRGYFE--ELITMLEAALGLERAHMGMF 266 (624)
T ss_dssp ----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSC---CSGGGSSSSTTCCCT--TSTTTHHHHTTSTTCCHHHH
T ss_pred ----CChhHHHHHHHHHhCchHHHHHHHhcchhc-ccHHH---HHHHHHHHHhCCCHH--HHHHHHHHHhCCCchhHHHH
Confidence 456667777777777777776665554444 23332 223445566778888 88999999998888888889
Q ss_pred HHHHHHHHHhC
Q 007775 552 YNLGLFYKSQG 562 (590)
Q Consensus 552 ~~l~~~~~~~g 562 (590)
..||.+|.+-.
T Consensus 267 TELaILYsKY~ 277 (624)
T 3lvg_A 267 TELAILYSKFK 277 (624)
T ss_dssp HHHHHHHHSSC
T ss_pred HHHHHHHHhcC
Confidence 99999887653
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.90 E-value=1.5 Score=48.70 Aligned_cols=119 Identities=10% Similarity=-0.061 Sum_probs=87.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-C------------------
Q 007775 449 DLAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNID-P------------------ 509 (590)
Q Consensus 449 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p------------------ 509 (590)
.+...+...+.++-+.. .....|.++...+.+|.++...|++++|..+|+++-..- .
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34556777777776654 344567777788999999999999999999999874211 1
Q ss_pred ----CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHhhcC-CCH----HHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 007775 510 ----AHVPSLISTAVVLRKLSDQSNAVIRSFLMAALRLDG-MNS----SAWYNLGLFYKSQGTQSSKLEAAECFEA 576 (590)
Q Consensus 510 ----~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~~~p-~~~----~~~~~l~~~~~~~g~~~~~~~A~~~~~~ 576 (590)
..+..|..+..++.+.+.++ .++++...|++..+ ++. ..|..+=..+...|+ |++|...+..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~--~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~~ 963 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYI--DALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALMV 963 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCH--HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHHh
Confidence 01245667778888899988 89999999988654 333 257778888899999 9999877643
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.36 E-value=8 Score=35.15 Aligned_cols=103 Identities=10% Similarity=-0.074 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHc---CChHH
Q 007775 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ---KRYED 370 (590)
Q Consensus 294 ~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~---g~~~~ 370 (590)
+.....+|+.+-.+.- ...-.++..+..+|..+.+.|++.+|..+|-.. . .+++ ..+..+-.-+... |..
T Consensus 112 r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~--~-~~s~-~~~a~~l~~w~~~~~~~~~-- 184 (312)
T 2wpv_A 112 LKDVITGMNNWSIKFS-EYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG--T-HDSM-IKYVDLLWDWLCQVDDIED-- 184 (312)
T ss_dssp HHHHHHHHHHHHHHTS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS--C-HHHH-HHHHHHHHHHHHHTTCCCH--
T ss_pred HHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC--C-CccH-HHHHHHHHHHHHhcCCCCc--
Confidence 4444666776655443 223468899999999999999999999887522 1 1112 2222221111111 211
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHH-HHHHHhcCHhHHHHHHHHHHHHH
Q 007775 371 AETILNAALDQTGKWEQGELLRTKA-KVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 371 A~~~~~~a~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
...+.+...+ ..|...|+...|...++...+..
T Consensus 185 ---------------~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 185 ---------------STVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred ---------------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2233333333 34567899999999988877665
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.04 E-value=12 Score=36.31 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCC----CCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhccccc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSD 428 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 428 (590)
.....++.++...|++.+|..++.......-. ..-.+++....+++...+++.+|...++++.......
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~------- 210 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN------- 210 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc-------
Confidence 34577899999999999999999887643211 1235678888999999999999999999875432110
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007775 429 KRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEAI 473 (590)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 473 (590)
..........+...|..+...++|.+|-.+|.+++..
T Consensus 211 --------~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 211 --------PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp --------SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred --------CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 0011123557778899999999999999999988753
No 266
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.88 E-value=5.5e-06 Score=78.31 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=38.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhc
Q 007775 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (590)
Q Consensus 323 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g 402 (590)
|+.++...|++..|++..+++ +++ .+|......+...+.+.-|.-+--..+-... . +-.+...|...|
T Consensus 176 LAstLV~L~~yq~AVdaArKA-----ns~-ktWKeV~~ACvd~~EfrLAqicGLniIvhad---e---L~elv~~YE~~G 243 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARKA-----NST-RTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---E---LEELINYYQDRG 243 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTTC-----CSS-CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS---C---CSGGGSSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCh-hHHHHHHHHHhCchHHHHHHHhcchhcccHH---H---HHHHHHHHHhCC
Confidence 444444444444444433332 233 4555555555555555555544333332211 1 112344455566
Q ss_pred CHhHHHHHHHHHHHH
Q 007775 403 QLKGAVETYTHLLAA 417 (590)
Q Consensus 403 ~~~~A~~~~~~~l~~ 417 (590)
-+++-+.+++..+.+
T Consensus 244 ~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 244 YFEELITMLEAALGL 258 (624)
T ss_dssp CCTTSTTTHHHHTTS
T ss_pred CHHHHHHHHHHHhCC
Confidence 666666666655543
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.72 E-value=14 Score=33.62 Aligned_cols=71 Identities=4% Similarity=-0.199 Sum_probs=44.3
Q ss_pred CCCchHHHHHHHHHHHhCCChHHHHHHHHHhh---------------cCC--CCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 007775 191 IINRKERYHILALCYYGAGEDLVALNLLRTLL---------------SGS--EDPKCLPALLIASKICGEYPDLAEEGAT 253 (590)
Q Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---------------~~~--~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 253 (590)
...+++.+..+|..|+..|++.+|...|-..- ... ..|.....+..++-+.+...++...|..
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~ 209 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHE 209 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34678888899999999999888888664111 000 2334445555555455555666777777
Q ss_pred HHHHHHHH
Q 007775 254 FASRALEC 261 (590)
Q Consensus 254 ~~~~~l~~ 261 (590)
.+....+.
T Consensus 210 ~~~~f~~~ 217 (312)
T 2wpv_A 210 SKDIFLER 217 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655443
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.15 E-value=16 Score=33.55 Aligned_cols=105 Identities=16% Similarity=0.065 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcCChHHH
Q 007775 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (590)
Q Consensus 292 ~~~~~~~~~A~~~~~~a~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 371 (590)
.++....++|+.+-.+.- ...-.+++.+..+|..|.+.+++.+|..+|- +..+ +.+ ..+..+-.-+...+
T Consensus 112 p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~-~s~-~~~a~mL~ew~~~~----- 181 (336)
T 3lpz_A 112 PVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTK-ESP-EVLARMEYEWYKQD----- 181 (336)
T ss_dssp HHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCT-THH-HHHHHHHHHHHHTS-----
T ss_pred cHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCC-chH-HHHHHHHHHHHHhc-----
Confidence 345555777777765532 2344788999999999999999999998873 2221 111 23322221111111
Q ss_pred HHHHHHHHhccCCCCchHHHHHHH-HHHHHhcCHhHHHHHHHHHHHHH
Q 007775 372 ETILNAALDQTGKWEQGELLRTKA-KVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 372 ~~~~~~a~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
.| .....+...+ ..|...++...|...++..++..
T Consensus 182 ----------~~--~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 182 ----------ES--HTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp ----------CG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------CC--ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 12 3344444444 45677899999999887777654
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=82.28 E-value=11 Score=29.14 Aligned_cols=64 Identities=16% Similarity=0.032 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 007775 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (590)
Q Consensus 160 ~~~~~~~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 223 (590)
+....+.-...+...|.-+..-+.+...+...+.+++....+|.+|-+.|+..+|-++++++-+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344444445677888888888888887777778899999999999999999999999998874
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.54 E-value=20 Score=38.75 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=42.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYSASKCHATGVLYEKKGLYKEAIKAFRSAL 505 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 505 (590)
+...+...|.++-|. +.+...|.++..-+.+|.++...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 556677788777554 4567778888888999999999999999999999875
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.22 E-value=29 Score=28.97 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=55.0
Q ss_pred cchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 440 RSLELEVWLDLAFIYINLSQWHDAEICLSKSEA--ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 440 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
.|....+|...+..+ ..+...++...|..+.. +....+..|...|..+...|++.+|...|+..++..-
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 367778898888876 34446688888887765 4455678888999999999999999999999998653
No 272
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=75.74 E-value=9.5 Score=29.45 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 488 YEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 488 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
+..+|+.++-.+.+...+...+-+++.+..+|.+|.+.|+.. +|.+.+.+|-+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r--~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDER--DATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchh--hHHHHHHHHHH
Confidence 344555555555555544444445555666666666666655 55555555544
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.15 E-value=34 Score=36.96 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 007775 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (590)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~e~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 222 (590)
.+...+...|+++-+.+ .++..|.++..-|.+|.+|+..|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 36666777888876554 344556677778999999999999999999999986
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.50 E-value=48 Score=27.62 Aligned_cols=65 Identities=8% Similarity=0.028 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
..|..++..+ ..+...++..+|.-+....-....+..|...|..+...|++.+|..+|+..++..
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4555555544 2344678999999988876555778899999999999999999999999999875
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.95 E-value=34 Score=27.06 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 441 SLELEVWLDLAFIYINLSQWHDAEICLSKSEAI--SSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 441 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
|....+|...+... +++...|..+... ....+..|...|..+...|++.+|.+.|+..++...
T Consensus 68 ~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 68 PRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 56677777777552 4477777776654 445577788889999999999999999999988653
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=63.36 E-value=20 Score=24.92 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 6 ISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
...-+-.+..+|+-..+.|+|++|+..|...++......
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344555677888899999999999999999988776654
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.02 E-value=24 Score=28.35 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 007775 353 KGWLLMARILSAQKRYEDAETILNAALDQT 382 (590)
Q Consensus 353 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 382 (590)
..|...|..+...|++.+|.++|+.+++..
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444444455555555555555555443
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=60.28 E-value=25 Score=23.62 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHHH
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKSEAISSYSASK 480 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 480 (590)
-..+|..+...|++++|..+|-+|+...|.-...
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3467888888888888888888888888765443
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.76 E-value=47 Score=28.24 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCHHHHHHHH
Q 007775 408 VETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLSKSEA--ISSYSASKCHATG 485 (590)
Q Consensus 408 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~ 485 (590)
..++++++....+...-... +....+|...+.. .+++..+|..+.. +....+..|...|
T Consensus 97 ~~lLErc~~~F~~~~rYknD-------------~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA 157 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDD-------------VRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYA 157 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTC-------------HHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCC-------------HHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHhc
Q 007775 486 VLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~al~ 506 (590)
..+...|++.+|...|+..++
T Consensus 158 ~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 158 NYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=57.41 E-value=28 Score=24.20 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhcc
Q 007775 70 PELWKLADAPRETIMSYRRALLP 92 (590)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~l~~ 92 (590)
+.-.-+.|++++|+..|..++..
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHH
Confidence 45667889999999999998875
No 281
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=55.36 E-value=24 Score=24.74 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
-.+..+|+-....|+|++|+..|...++......
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3466778888999999999999999988776554
No 282
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=50.46 E-value=21 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 552 YNLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 552 ~~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
..+|..+...|+ +++|...|-+|+...|+
T Consensus 21 V~~GE~L~~~g~---~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGD---YEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHHHcCC
Confidence 457888888888 88888888888887764
No 283
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=49.77 E-value=31 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007775 444 LEVWLDLAFIYINLSQWHDAEICLSKSE 471 (590)
Q Consensus 444 ~~~~~~la~~~~~~g~~~~A~~~~~~a~ 471 (590)
+-.+...+..+...|+|++|+++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 5567778888999999999988777654
No 284
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=49.15 E-value=41 Score=23.31 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=17.7
Q ss_pred HHHHhcCChhHHHHHHHHHhcc
Q 007775 71 ELWKLADAPRETIMSYRRALLP 92 (590)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~l~~ 92 (590)
.-.-+.|++++|+.+|..++..
T Consensus 19 ve~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 4556789999999999888775
No 285
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=48.09 E-value=35 Score=23.75 Aligned_cols=39 Identities=18% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 6 ISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
...-+-.+..+|+-....|+|++|+..|...++......
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~ 47 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLAL 47 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888899999999999999888765543
No 286
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=47.99 E-value=27 Score=34.56 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhhhhcc----c---------hH--------HHHHHHHHHHHHHHhh---hcCCCCCCCccccchHHH
Q 007775 6 ISLLLEAIFLKAKCLQGLG----R---------FK--------EAAQSCKVILDIVESS---FAEGFPENLGADCKLQET 61 (590)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~g----~---------~~--------~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 61 (590)
.+.++|++|++|.+|..|- . .+ ...+++..+++..+.+ +|...+... .. ++ +
T Consensus 105 ~~~~aea~flRA~~yf~L~~~~G~VP~~~~~~~~~~~~~~~r~~~~ev~~~I~~dL~~A~~~Lp~~~~~~~-~g-r~--t 180 (517)
T 3qnk_A 105 SRLTGEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSRE-KG-RA--T 180 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCCSSCCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHSCSCCCSTT-TT-SC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceeeCCcCCccccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCcc-cC-cc--c
Confidence 3678999999999998873 1 01 1245555555544433 333211100 00 11 2
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 007775 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNL 96 (590)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 96 (590)
-..|..+++.+|+-.+++++|+...++++..|..+
T Consensus 181 k~aA~allarv~L~~~~~~~A~~~a~~vi~~gy~L 215 (517)
T 3qnk_A 181 KGAAYALKSRVELYDKRYEDVIKSCAEVYKLGYEL 215 (517)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 33577788999999999999999999999875433
No 287
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=47.61 E-value=33 Score=33.15 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhcc-ccC
Q 007775 550 AWYNLGLFYKSQGTQSSKLEAAECFEAAASL-EET 583 (590)
Q Consensus 550 ~~~~l~~~~~~~g~~~~~~~A~~~~~~al~l-~p~ 583 (590)
..+.+|.++...++ +.+|.+.+..|+.. .|.
T Consensus 222 Y~YYlGr~~~~~~~---y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQ---VHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHC
T ss_pred eeHHHHHHHHHHcc---HHHHHHHHHHHHHhcCCc
Confidence 34445555555555 55555555555554 443
No 288
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.33 E-value=1.1e+02 Score=24.47 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---HHHH------HHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 447 WLDLAFIYINLSQWHDAEICLSKSEAISSYS---ASKC------HATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 447 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~------~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
-+.-+..++..|+|=+|-+.++......+.. ...| ...|....+.|+..-|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666777799999999999999876554 2222 2234455678999999999999876
No 289
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=45.95 E-value=2.1e+02 Score=27.52 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC--------CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCC
Q 007775 446 VWLDLAFIYINLSQWHDAEICLSKSEAISS--------YS--ASKCHATGVLYEKKGLYKEAIKAFRSALNI-DPAH 511 (590)
Q Consensus 446 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~ 511 (590)
..+.+-.+|.+.++..-+...++..-...+ .. ....+.+|.++..+++|.+|.+.+..|+.. .|..
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 445566889999999999998875543322 11 345888999999999999999999999988 6654
No 290
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=44.68 E-value=41 Score=25.19 Aligned_cols=39 Identities=15% Similarity=-0.004 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 6 ISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
...-+-.+..+|+-....|+|++|+..|..+++......
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 444555677788888889999999999999988776554
No 291
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=44.61 E-value=2.7e+02 Score=28.37 Aligned_cols=29 Identities=14% Similarity=-0.027 Sum_probs=21.0
Q ss_pred HHHHHHH--HHhCCCCchHHHHHHHHHHhccccCC
Q 007775 552 YNLGLFY--KSQGTQSSKLEAAECFEAAASLEETA 584 (590)
Q Consensus 552 ~~l~~~~--~~~g~~~~~~~A~~~~~~al~l~p~~ 584 (590)
..+..++ ...|+ +++|++.+++ +.+-|.+
T Consensus 540 l~l~~f~~~~~~g~---~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 540 LNISSIRELYFNKQ---WQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHh-CCCCCCC
Confidence 3444444 77899 9999999998 6677765
No 292
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=44.37 E-value=75 Score=22.55 Aligned_cols=41 Identities=5% Similarity=0.040 Sum_probs=25.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhcc-----CCCCChhhHHHHHHHHHH
Q 007775 70 PELWKLADAPRETIMSYRRALLP-----CWNLDAETTAKLQKEFAI 110 (590)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~~~a~ 110 (590)
+.-.-+.|++++|+..|..++.. ...+++.....+...+..
T Consensus 22 Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~e 67 (93)
T 1wfd_A 22 AVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISG 67 (93)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566789999999999888765 233455444444444433
No 293
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=42.22 E-value=85 Score=21.87 Aligned_cols=40 Identities=8% Similarity=0.064 Sum_probs=26.3
Q ss_pred HHHHhcCChhHHHHHHHHHhcc-----CCCCChhhHHHHHHHHHH
Q 007775 71 ELWKLADAPRETIMSYRRALLP-----CWNLDAETTAKLQKEFAI 110 (590)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~~~a~ 110 (590)
.-.-..|++++|+.+|..++.. ...+++.....+...+..
T Consensus 24 ve~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~e 68 (86)
T 4a5x_A 24 VELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISK 68 (86)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4557789999999999998865 234555544444444433
No 294
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.65 E-value=62 Score=22.42 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 8 LLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
.-+-.+..+|+-..+.|+|++|+..|...++......
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3445577788899999999999999999988776554
No 295
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=41.21 E-value=61 Score=27.15 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
...+.+|..++..++|.+|.+.+..++...|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 3467788888888888888888888887777654
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=40.11 E-value=45 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 007775 551 WYNLGLFYKSQGTQSSKLEAAECFEAAA 578 (590)
Q Consensus 551 ~~~l~~~~~~~g~~~~~~~A~~~~~~al 578 (590)
+...+..+...|+ |++|+++.+++.
T Consensus 18 ~~RrAe~ll~~gk---ydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGK---YEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCC---HHHHHHHHHHHH
Confidence 3445666666666 666666666554
No 297
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.46 E-value=1.4e+02 Score=23.74 Aligned_cols=61 Identities=8% Similarity=-0.039 Sum_probs=35.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcccCCC--cHHHHHHHHH------HHHHcCChHHHHHHHHHHHhc
Q 007775 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--NLKGWLLMAR------ILSAQKRYEDAETILNAALDQ 381 (590)
Q Consensus 321 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~la~------~~~~~g~~~~A~~~~~~a~~~ 381 (590)
+..+..++..|+|-+|-+.++.+-...+.. ....|..+.. ...+.|+..-|..++.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555666677777777777777665443 1122222222 344567777777777776653
No 298
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=38.42 E-value=28 Score=33.61 Aligned_cols=83 Identities=16% Similarity=0.061 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhhhhc----c----------ch----------H-------HHHHHHHHHHHHHHhhhcCCCCCCCc-
Q 007775 6 ISLLLEAIFLKAKCLQGL----G----------RF----------K-------EAAQSCKVILDIVESSFAEGFPENLG- 53 (590)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~----g----------~~----------~-------~A~~~~~~~l~~~~~~~~~~~~~~~~- 53 (590)
-++.+|++|++|.+|..| | .. + ...+++..+++..+.. ...|....
T Consensus 114 ~~~~gEa~flRA~~yf~L~~~fG~~y~~~~~~~~VPl~~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A--~~Lp~~~~~ 191 (441)
T 3l22_A 114 DRYVQEAKFVRALAYYYLNNLYPTPYSVNPDAKSVPLRLTAEAGTENNNMPRSTVKQIYEHILSDLENI--SALDTEVNT 191 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCCTTTCTTCBCCCCCCSCCCSSTTCCCCCCBHHHHHHHHHHHTSCC--TTSBCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcceEecccccccccCCCCCCHHHHHHHHHHHHHHH--hcccccccc
Confidence 467899999999999887 4 11 0 1256666677666554 33444332
Q ss_pred cccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 007775 54 ADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (590)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 90 (590)
........-..|..+++.+|.-.|++++|+...++++
T Consensus 192 ~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 192 YTGVTHATQAAANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp HHHHHSCBHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred CccCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 1001112244677788999999999999999999988
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.81 E-value=27 Score=23.84 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 007775 320 LYRLSLEYAEQRKLNAAHYYAKMLLK 345 (590)
Q Consensus 320 ~~~la~~~~~~g~~~~A~~~~~~~l~ 345 (590)
...+|+-|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34577778888888888888887764
No 300
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=36.08 E-value=2.6e+02 Score=25.72 Aligned_cols=30 Identities=3% Similarity=-0.178 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 007775 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (590)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 417 (590)
..-+..+|..+++.+++.+|+..+-.+-..
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 444555666666666666666666655554
No 301
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=36.06 E-value=52 Score=32.32 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhc----c----------------------------chHHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 007775 7 SLLLEAIFLKAKCLQGL----G----------------------------RFKEAAQSCKVILDIVESSFAEGFPENLGA 54 (590)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----g----------------------------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 54 (590)
++.+|++|++|.+|..| | ......+.+..++...+.. ....|..+..
T Consensus 116 ~~~gEA~flRA~~Yf~L~~~fG~~y~~~~~~~~VPl~~~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A-~~~Lp~~~~~ 194 (495)
T 3lew_A 116 RIKGQALALRGFLYLHLASCYSFAIDKDPDAVCAPIYTQSTDETIAAEGKPASSVSEVYAQSINDLEEA-LELIPETYVR 194 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTTCTTSEEECCCCSCC-CHHHHSCCCCEEHHHHHHHHHHHHHHH-HHHSCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCCceEEecCCCccccccCCCCCCHHHHHHHHHHHHHHH-HHhcccccCc
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 007775 55 DCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (590)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 90 (590)
.......-..|..+++.+|.-.|++++|+...++++
T Consensus 195 ~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi 230 (495)
T 3lew_A 195 DAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLL 230 (495)
T ss_dssp SSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
No 302
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.62 E-value=70 Score=26.80 Aligned_cols=79 Identities=9% Similarity=-0.101 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHH
Q 007775 443 ELEVWLDLAFIYINLSQWHDAEICLSKSEAISSYSAS-----KCHATGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLIS 517 (590)
Q Consensus 443 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 517 (590)
.....+.+|.+++..++|.+|.+.+..|+...|.+.. ++..+.-+-.-.|+... ...+++ . + ...+..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~-~-~~~y~~ 85 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----Y-H-LMQFAE 85 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----T-T-CGGGHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----C-c-hhHHHH
Confidence 3567888999999999999999999999999887632 23334444455676543 233332 1 1 124566
Q ss_pred HHHHHHHcCCCc
Q 007775 518 TAVVLRKLSDQS 529 (590)
Q Consensus 518 l~~~~~~~g~~~ 529 (590)
+..+ .+.|+..
T Consensus 86 L~~A-vr~Gdl~ 96 (203)
T 3t5x_A 86 VTRA-VSEGNLL 96 (203)
T ss_dssp HHHH-HHHTCHH
T ss_pred HHHH-HHhCCHH
Confidence 6554 4566654
No 303
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=34.23 E-value=39 Score=24.08 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhccccC
Q 007775 553 NLGLFYKSQGTQSSKLEAAECFEAAASLEET 583 (590)
Q Consensus 553 ~l~~~~~~~g~~~~~~~A~~~~~~al~l~p~ 583 (590)
.+|..+...|+ ++.|+.+|-+|+.+.|.
T Consensus 25 ~lGE~L~~~g~---~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGD---YEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTC---HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHHcCC
Confidence 46777777777 77777777777766553
No 304
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=33.73 E-value=44 Score=23.83 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007775 448 LDLAFIYINLSQWHDAEICLSKSEAISSY 476 (590)
Q Consensus 448 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 476 (590)
..+|..+...|+++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45788888888888888888888877654
No 305
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=33.51 E-value=61 Score=32.17 Aligned_cols=87 Identities=17% Similarity=0.115 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhhhhcc----c---------hHH--------HHHHHHHHHHHHHhhhcCCCCC--CCccccchHHHH
Q 007775 6 ISLLLEAIFLKAKCLQGLG----R---------FKE--------AAQSCKVILDIVESSFAEGFPE--NLGADCKLQETL 62 (590)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~g----~---------~~~--------A~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~ 62 (590)
-+..+|++|++|.+|..|- . .++ ..+++..|++..+.+.. ..|. .+.....-..+-
T Consensus 119 ~~~~aEa~flRA~~Yf~L~~~yG~VPl~~~~~~~~~~~~~~r~~~~ev~~~I~~DL~~A~~-~Lp~~~~~~~~~~gr~tk 197 (528)
T 3i4g_A 119 TRMIAEARFLRATQYFYLASYFKNVPLVENVLTGEEANNVTKTSQADILKWCVTEFTAAAA-DLPRFSAIPAGEAGRACK 197 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBCCCCSCCCHHHHTTCCCBCHHHHHHHHHHHHHHHHH-HSCCGGGCCGGGTTSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccccccCCCCCHHHHHHHHHHHHHHHHH-hCCccccCCcccCCcCcH
Confidence 3678999999999999883 1 111 14455555544443321 1221 111000111123
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 007775 63 NRAVELLPELWKLADAPRETIMSYRRALLPC 93 (590)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 93 (590)
..|..+++.+|.-.+++++|....++++..|
T Consensus 198 ~aA~allarv~L~~~~~~~A~~~a~~vi~~g 228 (528)
T 3i4g_A 198 QAALAFLGRTCMLQKDWKSGAKAFHDIMELG 228 (528)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 4577788999999999999999999998753
No 306
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=32.66 E-value=3.2e+02 Score=25.72 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=15.1
Q ss_pred CChhHHHHHHHHHhccCCCCCh
Q 007775 77 DAPRETIMSYRRALLPCWNLDA 98 (590)
Q Consensus 77 g~~~~A~~~~~~~l~~~~~~~~ 98 (590)
...+..+.+|+.-|+.+ .||-
T Consensus 14 r~i~~Vv~lF~~~L~~~-ePdL 34 (550)
T 3u84_A 14 RSIDDVVRLFAAELGRE-EPDL 34 (550)
T ss_dssp CSHHHHHHHHHHHHTSS-SCCH
T ss_pred cchHHHHHHHHHHhcCC-CCCc
Confidence 45677888898888864 5553
No 307
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.29 E-value=56 Score=22.29 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 007775 390 LLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (590)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 418 (590)
-...+|+=|...|+|+.|+.+|+.+++.-
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34578889999999999999999998764
No 308
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=32.05 E-value=2.1e+02 Score=26.28 Aligned_cols=27 Identities=4% Similarity=-0.186 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 007775 512 VPSLISTAVVLRKLSDQSNAVIRSFLMAA 540 (590)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~l~~A~~~~~~a 540 (590)
.-.+..+|-.+.+.+++. +|+..+..+
T Consensus 296 vYPYtylgGy~yR~~~~r--eAl~~WA~A 322 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYY--EAIASWVDA 322 (472)
T ss_dssp SHHHHHHHHHHHHTTCHH--HHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHH--HHHHHHHHH
Confidence 334444444444444444 444444333
No 309
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=31.30 E-value=1.2e+02 Score=29.52 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhhhcc----c-----------------hHHHHHHHHHHHHHHHhh---hcCCCCCCCccccchHHHH
Q 007775 7 SLLLEAIFLKAKCLQGLG----R-----------------FKEAAQSCKVILDIVESS---FAEGFPENLGADCKLQETL 62 (590)
Q Consensus 7 ~~~~~~~~~~~~~~~~~g----~-----------------~~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 62 (590)
+.++|++|++|.+|..|- . .....+.+..+++..+.. +|.. ...+ ++. -
T Consensus 107 ~~~aEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~--~~~g---r~t--k 179 (481)
T 3jq1_A 107 SVKGECLFIRGFYLFQLAKEFKDAPLRLTASQSPSTFPLAKSSQADIWAQAKEDLKTAASLLPIT--NKIG---KPT--Q 179 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSEECCCCCCSSCCCSCCCEECHHHHHHHHHHHHHHHHHHSCSS--CSTT---SCC--H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeeeeccCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC--CCCC---ccc--H
Confidence 578999999999998873 1 001245666665544433 3321 1111 111 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 007775 63 NRAVELLPELWKLADAPRETIMSYRRALLP 92 (590)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 92 (590)
..|..+++.+|.-.|++++|+...++++..
T Consensus 180 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 209 (481)
T 3jq1_A 180 GAAYAALGKIYVYEENWQEAINVLEPLTQN 209 (481)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 357778899999999999999999998865
No 310
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.15 E-value=2.9e+02 Score=26.80 Aligned_cols=86 Identities=8% Similarity=-0.036 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhhhhc----cc-------h----------HHHHHHHHHHHHHHHh---hhcCCCCCCCc----c---c
Q 007775 7 SLLLEAIFLKAKCLQGL----GR-------F----------KEAAQSCKVILDIVES---SFAEGFPENLG----A---D 55 (590)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----g~-------~----------~~A~~~~~~~l~~~~~---~~~~~~~~~~~----~---~ 55 (590)
++.+|++|++|.+|..| |. . ....+++..++...+. .+|...+.... . .
T Consensus 109 ~~~gEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~ 188 (478)
T 3hdx_A 109 YDIAQVRALRAFAYFYMVRIWGDVPLVTYSYDNGTFPSMPRTDAQTVLSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQ 188 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSBCCCCSCCCTTCCCCCCCBCHHHHHHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeeeeccCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhCcccccCCccccccccccc
Confidence 57899999999999887 21 1 0124555555444433 33432211100 0 0
Q ss_pred cc-hHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 007775 56 CK-LQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (590)
Q Consensus 56 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 92 (590)
.. ....-..|..+++.+|+-.|++++|+...++++..
T Consensus 189 ~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 189 WQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp GTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 00 01123457778899999999999999999999864
No 311
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=29.93 E-value=3e+02 Score=26.88 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhhhc----cch--------------HHHHHHHHHHHHHHHhh---hcCCCCCCCccccchHHHHHHH
Q 007775 7 SLLLEAIFLKAKCLQGL----GRF--------------KEAAQSCKVILDIVESS---FAEGFPENLGADCKLQETLNRA 65 (590)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----g~~--------------~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 65 (590)
+.++|++|++|.+|..| |.. ....+.+..++...+.. +|...++ .+ ++. -..|
T Consensus 117 ~~~aEa~flRA~~Yf~L~~~~G~VP~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~-~g---r~t--k~aA 190 (499)
T 3jys_A 117 SYIAQARFNRAFAYYVLMDMFALPPFITEKNYSIEPAPLSREDLFNWIEAELNEIKPNLPSPRSE-YG---VAD--QAVA 190 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCBCCCTTSCCSSCCBCCHHHHHHHHHHHHHHHGGGSCCTTSS-TT---SCC--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceecccCCCCCCCcCCHHHHHHHHHHHHHHHHHhCCCCCCC-CC---CcC--HHHH
Confidence 68999999999999987 321 11245666665555433 2322111 11 111 2245
Q ss_pred HHHHHHHHH------hcCChhHHHHHHHHHhccCCCC
Q 007775 66 VELLPELWK------LADAPRETIMSYRRALLPCWNL 96 (590)
Q Consensus 66 ~~~l~~~~~------~~g~~~~A~~~~~~~l~~~~~~ 96 (590)
..+++.+|+ ..+++++|+...++++..+..+
T Consensus 191 ~allarvyL~~~~y~~~~~~~~A~~~a~~vi~~~y~L 227 (499)
T 3jys_A 191 SALLARMYLNAEIYTGKARYTECINACNEVIKAGYQL 227 (499)
T ss_dssp HHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhhhccChhHHHHHHHHHHHHHhcCCcc
Confidence 566667666 5789999999999998754443
No 312
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=28.22 E-value=3e+02 Score=23.99 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHcccCCCc
Q 007775 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (590)
Q Consensus 316 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 351 (590)
+.+-+..+|.+..+.++|++.+.+.+++.+.++.-.
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt 65 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELT 65 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCC
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCC
Confidence 345566778888888889888888888887776533
No 313
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=27.88 E-value=2.9e+02 Score=23.68 Aligned_cols=32 Identities=6% Similarity=-0.087 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcccCC
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 349 (590)
+-+..++.+..+.++|++...+.+++.+.++.
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~e 37 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVE 37 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCC
Confidence 34556777777788888888888888776665
No 314
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.72 E-value=1.9e+02 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=28.0
Q ss_pred HHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 12 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
.+..+|+.....|+-++|++.|++-++..++..
T Consensus 24 ~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl 56 (116)
T 2dl1_A 24 LFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGI 56 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhc
Confidence 456788888889999999999999888887764
No 315
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=27.24 E-value=3.1e+02 Score=23.89 Aligned_cols=30 Identities=0% Similarity=-0.127 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccc
Q 007775 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (590)
Q Consensus 318 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 347 (590)
+-+..++.+..+.++|++.+.+.+++.+.+
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~ 38 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSL 38 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Confidence 344556666677777777777777777655
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.09 E-value=2.8e+02 Score=23.32 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhhCCCChH--------HHHHHHHHHHHccCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHcC
Q 007775 298 QAKALQALVSAARSTNMRDLS--------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (590)
Q Consensus 298 ~~~A~~~~~~a~~~~~p~~~~--------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 366 (590)
++.|+..++..- .-.+-+.. +-.....++.+.|.+++|.+.+++.+..+|.+. .....|..+-.+..
T Consensus 88 LESAl~v~~~I~-~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~-kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIK-TEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQ-KLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGH-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH-HhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCch-HHHHHHHHHHhccC
Confidence 556666666554 33332211 112334567889999999999999998766654 45555555544443
No 317
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=27.00 E-value=99 Score=21.91 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHhhh
Q 007775 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (590)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (590)
-+-.+..+|+-....|+|++|+..|...++......
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~al 49 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 344567788889999999999999999888776554
No 318
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=26.33 E-value=1.2e+02 Score=29.30 Aligned_cols=83 Identities=18% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhc----c--------------------------chHHHHHHHHHHHHHHHhhhcCCCCCCCcccc
Q 007775 7 SLLLEAIFLKAKCLQGL----G--------------------------RFKEAAQSCKVILDIVESSFAEGFPENLGADC 56 (590)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----g--------------------------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 56 (590)
++.+|++|++|.+|..| | ......+.+..+++..+.....= +.+....
T Consensus 104 ~~~gEA~flRA~~yf~L~~~fG~~Y~~~~~~~~VPl~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~L--~~~~~~~ 181 (460)
T 3snx_A 104 QAQGQALALRAFCYLHLVQHYQFTYLKDKDAPCVPIYTEPTTSGTKPKGKSTVAQVYQQIFDDLNLAQDYL--TNYVRKG 181 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCTTTCTTSBCCCCCCSCCCTTCCCCCCCBHHHHHHHHHHHHHHHHHHT--TTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCCCCCceEEeccCCccccCCCCCCHHHHHHHHHHHHHHHHHhc--ccccCCc
Q ss_pred ---chHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 007775 57 ---KLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (590)
Q Consensus 57 ---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 91 (590)
.....-..|..+++.+|.-.|++++|+...++++.
T Consensus 182 ~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 182 DGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp GGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
No 319
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=26.27 E-value=1.3e+02 Score=21.41 Aligned_cols=55 Identities=9% Similarity=-0.001 Sum_probs=36.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCH-HH-----HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007775 450 LAFIYINLSQWHDAEICLSKSEAISSYSA-SK-----CHATGVLYEKKGLYKEAIKAFRSALN 506 (590)
Q Consensus 450 la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~-----~~~l~~~~~~~g~~~~A~~~~~~al~ 506 (590)
.|..++..|+|=+|-+.++......|... .. ....|......|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 35556677999999999999988775431 11 22233444566776 8888877765
No 320
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.67 E-value=2.4e+02 Score=26.60 Aligned_cols=64 Identities=6% Similarity=-0.054 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcc-----CCCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 007775 477 SASKCHATGVLYEKKGL--YKEAIKAFRSALNI-----DPAHVPSLISTAVVLRKLSDQSNAVIRSFLMAALR 542 (590)
Q Consensus 477 ~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~l~~A~~~~~~a~~ 542 (590)
.|-++.+||.+-...-. ...++.+|++++.. ...+...|..+|-.+.+.+++. +|...+..+-.
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~--eAl~~wa~aa~ 331 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVR--EALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHH--HHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHH--HHHHHhhhhhh
Confidence 35555555555432211 12244455555432 2233344444555555555554 55555444433
No 321
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=24.15 E-value=3.8e+02 Score=25.28 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=22.8
Q ss_pred HHHHHHHHHhh-----cCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 007775 533 IRSFLMAALRL-----DGMNSSAWYNLGLFYKSQGTQSSKLEAAECFEAAA 578 (590)
Q Consensus 533 A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~g~~~~~~~A~~~~~~al 578 (590)
++.+|.+++.. .......|..+|-.+++.++ +.+|+..+-.+-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~---~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRN---VREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcch---HHHHHHHHHHHH
Confidence 45555555442 12234445556666666666 666666655543
No 322
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=24.00 E-value=81 Score=30.80 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhhhhc----cc-------h----------HHHHHHHH-HHHHHHHhhhcCCCCCCCccccchHHHHHH
Q 007775 7 SLLLEAIFLKAKCLQGL----GR-------F----------KEAAQSCK-VILDIVESSFAEGFPENLGADCKLQETLNR 64 (590)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----g~-------~----------~~A~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (590)
++++|++|++|.+|..| |. . ....+.+. .++...+.......|...... ++. -..
T Consensus 113 ~~~aEa~flRA~~Yf~L~~~~G~VPl~~~~~~~~~~~~~~r~~~~evy~~~I~~DL~~A~~~~Lp~~~~~g-r~t--k~a 189 (482)
T 3otn_A 113 GYMAEVKFMRALYYFYLVRIFGDVPKITTVQSELGELQVSRAPVKEIYDEIIIPDLLEAEQSDLAFSDHTG-RVS--MGA 189 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSBCCCCSCGGGCSCSSCCCBCHHHHHHHTHHHHHHHHHTSCCCSCCSSS-CCC--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcceeCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHcCCCCcCcCC-cCc--HHH
Confidence 57899999999999887 31 0 01256666 666555544332123111001 221 335
Q ss_pred HHHHHHHHHHhcC---------ChhHHHHHHHHHhccC
Q 007775 65 AVELLPELWKLAD---------APRETIMSYRRALLPC 93 (590)
Q Consensus 65 ~~~~l~~~~~~~g---------~~~~A~~~~~~~l~~~ 93 (590)
|..+++.+|.-.| ++++|+...++++..|
T Consensus 190 A~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~~~ 227 (482)
T 3otn_A 190 VKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIKSN 227 (482)
T ss_dssp HHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHccC
Confidence 6777888888877 8999999999998763
No 323
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.74 E-value=2.3e+02 Score=21.10 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=17.8
Q ss_pred HHHHhcCChhHHHHHHHHHhcc
Q 007775 71 ELWKLADAPRETIMSYRRALLP 92 (590)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~l~~ 92 (590)
.-.-..|++++|+.+|..++..
T Consensus 26 ve~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 26 AQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 4556779999999999988875
No 324
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.85 E-value=4.7e+02 Score=24.44 Aligned_cols=69 Identities=9% Similarity=-0.016 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHhhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007775 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKGSANHARSLELEVWLDLAFIYINLSQWHDAEICLS 468 (590)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 468 (590)
.+...++..|...|+.++|...++++-..-.... ..........+...+..+...+++..+....-
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~--------------~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l 193 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD--------------SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSL 193 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC--------------CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC--------------CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444566667777777777777666654421110 00011234455555666666777766655544
Q ss_pred HHH
Q 007775 469 KSE 471 (590)
Q Consensus 469 ~a~ 471 (590)
..+
T Consensus 194 ~~l 196 (393)
T 4b4t_O 194 LYL 196 (393)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 325
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.76 E-value=2.9e+02 Score=22.03 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=48.8
Q ss_pred cchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007775 440 RSLELEVWLDLAFIYINLSQWHDAEICLSKSEA--ISSYSASKCHATGVLYEKKGLYKEAIKAFRSALNIDP 509 (590)
Q Consensus 440 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 509 (590)
.|....+|...+... +++..+|..+.. +....+..|...|..+...|++.+|.+.|+..++...
T Consensus 62 D~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 62 DPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp CHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 366677888877763 336666766655 4455678888999999999999999999999998653
No 326
>3rkl_A STIV-A81; 4-helix bundle, hyperthermophilic viral protein, viral prote; 1.70A {Sulfolobus turreted icosahedral virus}
Probab=22.36 E-value=41 Score=21.43 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhhhhccchHH
Q 007775 5 AISLLLEAIFLKAKCLQGLGRFKE 28 (590)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~g~~~~ 28 (590)
-|+-++|..|..+...+++.+||+
T Consensus 28 diknlaeivyqlaklieklsqyee 51 (87)
T 3rkl_A 28 DIKNLAEIVYQLAKLIEKLSQYEE 51 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999998885
No 327
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=22.27 E-value=69 Score=17.68 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHhccC
Q 007775 79 PRETIMSYRRALLPC 93 (590)
Q Consensus 79 ~~~A~~~~~~~l~~~ 93 (590)
+++|+..|+.+++.+
T Consensus 18 yDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 18 YDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHhcC
Confidence 789999999988863
No 328
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.66 E-value=3.6e+02 Score=22.67 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=35.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCChhhHHHHHHHHHHcCCCc
Q 007775 484 TGVLYEKKGLYKEAIKAFRSALNIDPAHVPSLISTAVVLRKLSDQS 529 (590)
Q Consensus 484 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 529 (590)
...++.+.|.|++|.+.+++.+..+|.+-.....|..+-.+.+.+.
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H 165 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAH 165 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCccc
Confidence 3456788999999999999999877776666777777766666554
No 329
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=20.95 E-value=95 Score=21.58 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 007775 194 RKERYHILALCYYGAGEDLVALNLLRTLLS 223 (590)
Q Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 223 (590)
++.....-|.-+++.++|.+|..+|+++..
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 455666677788889999999999998873
Done!