BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007778
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 114/225 (50%), Gaps = 16/225 (7%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LH+A+ G+L V +LQ + N + ETPL++AA +GH + + +LQ N
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVS------NVKVETPLHMAARAGHTEVAKYLLQ--N 69
Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHI 241
+ A++ H AA+ GH ++K LL PNL T + T LH AA +GH+
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT---AGHTPLHIAAREGHV 126
Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH 301
+ V LLE +++ A + + G T LH AA+ G + V + L+ +D K G T LH
Sbjct: 127 ETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLH 184
Query: 302 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEA 346
+AV N DIV +L+ P G T LHIA K+ + + A
Sbjct: 185 VAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 228
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 122/267 (45%), Gaps = 41/267 (15%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E N + G LH+AAR G++ V+ +L+ +A++A ++KK G TPL+VAA
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQA--CMTKK---GFTPLHVAA 154
Query: 168 ESGHALIVEEMLQ---------------------HMNLETASI----------PARNGYD 196
+ G + E +L+ H NL+ + PA NGY
Sbjct: 155 KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214
Query: 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK 256
H+AAKQ +EV + LL ++ + T LH AA +GH ++V LL +N
Sbjct: 215 PLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GN 272
Query: 257 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
+ +G T LH A+ GH+ V L+ K T + G T LH+A N +V L+
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 317 RPDPSVLKLEDNKGNTALHIAIKKGRT 343
+ V + G + LH A ++G T
Sbjct: 332 QHQADV-NAKTKLGYSPLHQAAQQGHT 357
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNL 220
TPL+VA+ GH IV+ +LQ + ++ H+AA+ GH EV K LL +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLL-QNKAK 72
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
V T LH AA GH ++V LLE ++N +A G T LH AAR GH+E V A
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLA 131
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
L+ K+ S T KKG T LH+A K + V EL+ + G T LH+A+
Sbjct: 132 LLEKEASQACMT-KKGFTPLHVAAK-YGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 187
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 127/258 (49%), Gaps = 25/258 (9%)
Query: 47 DKPPSALG-----PMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIE---KQKSFRVVME 98
D P+A G P+ + + I K RG ++ G+ K +V +
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 228
Query: 99 RQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQE 158
R L GG + ++ +G LHLAA+ G+ + ++ +L S AN + N+
Sbjct: 229 RSLLQYGG-----SANAESVQGVTPLHLAAQEGH-AEMVALLLSKQANG-----NLGNKS 277
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
G TPL++ A+ GH + + +++H + A+ R GY HVA+ G+++++K LL
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDAT--TRMGYTPLHVASHYGNIKLVKFLLQHQA 335
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
++ T L S LH AA QGH D+V LL+ ++ +++ ++G T L A R+G++ V
Sbjct: 336 DVNAKTKLGYS-PLHQAAQQGHTDIVTLLLKNGASPNEVS-SDGTTPLAIAKRLGYISVT 393
Query: 279 KAL--VSKDPSTGFRTDK 294
L V+ + S +DK
Sbjct: 394 DVLKVVTDETSFVLVSDK 411
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 18/242 (7%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
+ K ++ K LH AAR G+ + V +L+ N A L+ G TPL++AA
Sbjct: 68 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE----NNANPNLA--TTAGHTPLHIAA 121
Query: 168 ESGHALIVEEMLQHMNLETA-SIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTT 224
GH VE +L + E + + + G+ HVAAK G + V + LL PN
Sbjct: 122 REGH---VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
L T LH A ++D+V LL + A NG T LH AA+ +EV ++L+
Sbjct: 179 GL---TPLHVAVHHNNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQY 234
Query: 285 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
S + +G T LH+A + + ++V L+ + L + G T LH+ ++G
Sbjct: 235 GGSANAES-VQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVP 292
Query: 345 EA 346
A
Sbjct: 293 VA 294
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 82.8 bits (203), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGE 216
G TPL++AA +GH +V+ +L+ A + A+ NG H+AA+ GHLEV+K LL E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-E 56
Query: 217 FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 276
V D + T LH AA GH++VV LLE +++ NG+T LH AAR GHLE
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLE 115
Query: 277 VVKALV 282
VVK L+
Sbjct: 116 VVKLLL 121
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/124 (42%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
NG H+AA+ GHLEV+K LL E V D + T LH AA GH++VV LLE +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
++ NG+T LH AAR GHLEVVK L+ + DK G+T LH+A + + ++V
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117
Query: 313 LELI 316
L+
Sbjct: 118 KLLL 121
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAAR G+L V +L EA ++ K++ G TPL++AA +GH +V+ +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 180 QHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
+ A + A +NG H+AA+ GHLEV+K LL E V D + T LH AA
Sbjct: 56 E----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAAR 110
Query: 238 QGHIDVVNFLLE 249
GH++VV LLE
Sbjct: 111 NGHLEVVKLLLE 122
Score = 72.4 bits (176), Expect = 6e-13, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 9/125 (7%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
T LH AA GH++VV LLE +++ NG+T LH AAR GHLEVVK L+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ----- 344
+ DK G+T LH+A + + ++V L+ V +D G T LH+A + G +
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 345 -EAGA 348
EAGA
Sbjct: 121 LEAGA 125
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ K G LHLAAR G+L V +L EA ++ K++ G TPL++AA
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAA 76
Query: 168 ESGHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELL 214
+GH +V+ +L+ A + A +NG H+AA+ GHLEV+K LL
Sbjct: 77 RNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
NG+T LH AAR GHLEVVK L+ + DK G+T LH+A + + ++V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQ------EAGA-AHSKD-HGKPP 358
V +D G T LH+A + G + EAGA ++KD +G+ P
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
+GY H+AA GHLE+++ LL + V +DL+ T LH AAA GH+++V LL+ +
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
++ N+G T LH AA+ GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 105 DV-NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ + +G TPL++AA +GH IVE +L+ N
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNATDNDGYTPLHLAASNGHLEIVEVLLK--NGAD 72
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
+ G H+AA GHLE+++ LL + V D T LH AA GH+++V
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 247 LLE 249
LL+
Sbjct: 132 LLK 134
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L V +L++ A DL G TPL++AA +GH IVE +L
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDL------TGITPLHLAAATGHLEIVEVLL 100
Query: 180 QHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
+H A + A +G+ H+AAK GHLE+++ LL + V D TA +
Sbjct: 101 KH----GADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISID 155
Query: 238 QGHIDVVNFL 247
G+ D+ L
Sbjct: 156 NGNEDLAEIL 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ N+G T LH AA GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNA 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHS 351
+D G T LH+A + +IV L++ V DN G+T LH+A K G +
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 352 KDHGKPPSATKQLKQTVSDIKHD 374
HG +A + +T DI D
Sbjct: 135 --HGADVNAQDKFGKTAFDISID 155
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 85/154 (55%), Gaps = 13/154 (8%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNL 220
L AAE+G+ V+++L+ N + +G H+AA+ GH EV+K LL G PN
Sbjct: 8 LIEAAENGNKDRVKDLLE--NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN- 64
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
D T LH AA GH +VV LL ++ ++GKT LH AA GH EVVK
Sbjct: 65 --AKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 281 LVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 312
L+S+ DP+T +D G+T L +A + NE++V
Sbjct: 122 LLSQGADPNT---SDSDGRTPLDLAREHGNEEVV 152
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G+ + +K+LL E V +D T LH AA GH +VV LL ++ +
Sbjct: 11 AAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDS 68
Query: 261 NGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR- 317
+GKT LH AA GH EVVK L+S+ DP+ D G+T LH+A + ++++V L+
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 318 -PDPSVLKLEDNKGNTALHIAIKKGRTQ 344
DP+ D+ G T L +A + G +
Sbjct: 126 GADPNT---SDSDGRTPLDLAREHGNEE 150
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 18/137 (13%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEIL-QSCDANEAKDLLSKKNQEGETPLYVAAESGHA 172
DS GK LHLAA G+ V +L Q D N K+ +G+TPL++AAE+GH
Sbjct: 34 DSDGKT---PLHLAAENGHKEVVKLLLSQGADPN-------AKDSDGKTPLHLAAENGHK 83
Query: 173 LIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCST 230
+V+ +L A +G H+AA+ GH EV+K LL G PN T+D T
Sbjct: 84 EVVKLLLSQGADPNAK--DSDGKTPLHLAAENGHKEVVKLLLSQGADPN---TSDSDGRT 138
Query: 231 ALHTAAAQGHIDVVNFL 247
L A G+ +VV L
Sbjct: 139 PLDLAREHGNEEVVKLL 155
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
++GY H+AA++GHLE+++ LL + V D T LH AA +GH+++V LL+
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+++ +G T LH AAR GHLE+V+ L+ + DK G+T +A+ NEDI
Sbjct: 92 ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ-DKFGKTPFDLAIDNGNEDI 149
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 14/157 (8%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K+++G TPL++AA GH IVE +L+
Sbjct: 9 AARAGQDDEVRILM----ANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 58
Query: 187 ASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A ++GY H+AA++GHLE+++ LL + V D T LH AA +GH+++V
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV 117
Query: 245 NFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
LL+ +++ GKT A G+ ++ + L
Sbjct: 118 EVLLKAGADV-NAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 12/103 (11%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAAR G+L ++E+L A+ ++ K+++G TPL++AA GH
Sbjct: 29 NAKDKDGYTPLHLAAREGHL-EIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLE 82
Query: 174 IVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELL 214
IVE +L+ A + A ++GY H+AA++GHLE+++ LL
Sbjct: 83 IVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +
Sbjct: 65 -DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLE 115
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
++GY H+AA++GHLE+++ LL + V D T LH AA +GH+++V LL+
Sbjct: 45 KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+++ +G T LH AAR GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 104 ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 13/130 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K+++G TPL++AA GH IVE +L+
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 70
Query: 187 ASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A ++GY H+AA++GHLE+++ LL + V D T LH AA +GH+++V
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV 129
Query: 245 NFLLEIDSNL 254
LL+ +++
Sbjct: 130 EVLLKAGADV 139
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 13/136 (9%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAAR G+L ++E+L A+ ++ K+++G TPL++AA GH
Sbjct: 41 NAKDKDGYTPLHLAAREGHL-EIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLE 94
Query: 174 IVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
IVE +L+ A + A ++GY H+AA++GHLE+++ LL + V D TA
Sbjct: 95 IVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTA 149
Query: 232 LHTAAAQGHIDVVNFL 247
+ G+ D+ L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +
Sbjct: 77 -DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLE 127
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 13/154 (8%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNL 220
L AAE+G+ V+++L++ AS +G H AA+ GH E++K LL G PN
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNAS--DSDGRTPLHYAAENGHKEIVKLLLSKGADPN- 64
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
D T LH AA GH ++V LL ++ ++G+T LH AA GH E+VK
Sbjct: 65 --AKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 281 LVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 312
L+SK DP+T +D G+T L +A + NE+IV
Sbjct: 122 LLSKGADPNT---SDSDGRTPLDLAREHGNEEIV 152
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 16/150 (10%)
Query: 201 AAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA 258
AA+ G+ + +K+LL G PN +D T LH AA GH ++V LL ++
Sbjct: 11 AAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAK 66
Query: 259 RNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
++G+T LH AA GH E+VK L+SK DP+ D G+T LH A + +++IV L+
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 317 R--PDPSVLKLEDNKGNTALHIAIKKGRTQ 344
DP+ D+ G T L +A + G +
Sbjct: 124 SKGADPNT---SDSDGRTPLDLAREHGNEE 150
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 292
AA G+ D V LLE ++ + ++G+T LH AA GH E+VK L+SK DP+
Sbjct: 11 AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---K 66
Query: 293 DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAH 350
D G+T LH A + +++IV L+ DP+ +D+ G T LH A + G +
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 351 SKDHGKPPSATKQLKQTVSDIKHD 374
SK G P+ + +T D+ +
Sbjct: 124 SK--GADPNTSDSDGRTPLDLARE 145
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ G LH AA G+ ++++L S A+ + K+ +G TPL+ AA
Sbjct: 25 ENGADPNASDSDGRTPLHYAAENGH-KEIVKLLLSKGADP-----NAKDSDGRTPLHYAA 78
Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTD 225
E+GH IV+ +L A +G H AA+ GH E++K LL G PN T+D
Sbjct: 79 ENGHKEIVKLLLSKGADPNAK--DSDGRTPLHYAAENGHKEIVKLLLSKGADPN---TSD 133
Query: 226 LSCSTALHTAAAQGHIDVVNFL 247
T L A G+ ++V L
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLL 155
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
LH A +V E+L S LL +K+Q+G PL+ + I +L M
Sbjct: 6 LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGH 240
N+ P +G+ FH+A G+LEV+K L P+L T+ T LH A +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKW 119
Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
+V FL+E +++ +I + LH AA +G L++++ L S DK+G T L
Sbjct: 120 FEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
A+ + D + L+ + L DNKG A +A+ +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
LH A +V E+L S LL +K+Q+G PL+ + I +L M
Sbjct: 6 LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGH 240
N+ P +G+ FH+A G+LEV+K L P+L T+ T LH A +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKW 119
Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
+V FL+E +++ +I + LH AA +G L++++ L S DK+G T L
Sbjct: 120 FEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
A+ + D + L+ + L DNKG A +A+ +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
LH A +V E+L S LL +K+Q+G PL+ + I +L M
Sbjct: 6 LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGH 240
N+ P +G+ FH+A G+LEV+K L P+L T+ T LH A +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKW 119
Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
+V FL+E +++ +I + LH AA +G L++++ L S DK+G T L
Sbjct: 120 FEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
A+ + D + L+ + L DNKG A +A+ +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
++GY H+AA++GHLE+++ LL + V D T LH AA +GH+++V LL+
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+++ +G T LH AAR GHLE+V+ L+ + DK G+T +A++ +EDI
Sbjct: 92 ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ-DKFGKTPFDLAIREGHEDI 149
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 14/157 (8%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K+++G TPL++AA GH IVE +L+
Sbjct: 9 AARAGQDDEVRILM----ANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 58
Query: 187 ASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A ++GY H+AA++GHLE+++ LL + V D T LH AA +GH+++V
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV 117
Query: 245 NFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
LL+ +++ GKT A R GH ++ + L
Sbjct: 118 EVLLKAGADV-NAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 13/136 (9%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAAR G+L ++E+L A+ ++ K+++G TPL++AA GH
Sbjct: 29 NAKDKDGYTPLHLAAREGHL-EIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLE 82
Query: 174 IVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
IVE +L+ A + A ++GY H+AA++GHLE+++ LL + V D T
Sbjct: 83 IVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTP 137
Query: 232 LHTAAAQGHIDVVNFL 247
A +GH D+ L
Sbjct: 138 FDLAIREGHEDIAEVL 153
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +
Sbjct: 65 -DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLE 115
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVM 222
L AAE+G+ V+++++ N + +G H AAK+GH E++K L+ + + V
Sbjct: 8 LIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VN 64
Query: 223 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 282
D T LH AA +GH ++V L+ +++ ++G+T LH AA+ GH E+VK L+
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 283 SKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
SK +D G+T L +A + NE+IV
Sbjct: 124 SKGADVN-TSDSDGRTPLDLAREHGNEEIV 152
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 4/144 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G+ + +K+L+ + V +D T LH AA +GH ++V L+ +++ +
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDS 68
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
+G+T LH AA+ GH E+VK L+SK + D G+T LH A K +++IV LI
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQ 344
V D+ G T L +A + G +
Sbjct: 128 DV-NTSDSDGRTPLDLAREHGNEE 150
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 98 ERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQ 157
+R I G DS G+ LH AA+ G+ ++++L S A+ ++ K+
Sbjct: 18 DRVKDLIENGADVNASDSDGRT---PLHYAAKEGH-KEIVKLLISKGAD-----VNAKDS 68
Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLG 215
+G TPL+ AA+ GH IV+ ++ + A + A+ +G H AAK+GH E++K L+
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLIS----KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
+ + V T+D T L A G+ ++V L
Sbjct: 125 KGAD-VNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 7/189 (3%)
Query: 155 KNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKEL 213
++Q +PL+ AAE+GH I ++Q N++T S R AA+ HLE +K L
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT---PLMEAAENNHLEAVKYL 63
Query: 214 LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273
+ + LV D ST LH AA +GH +VV +LL + G T + A
Sbjct: 64 I-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 333
H+++VK L+SK R D + LH A DI E++ L + G++
Sbjct: 123 HVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSP 180
Query: 334 LHIAIKKGR 342
LHIA ++ R
Sbjct: 181 LHIAARENR 189
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVL 210
L+ K+ EG T L++AA+ GH +V+ +L + ++ + G+ A + H++++
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-NCQDDGGWTPMIWATEYKHVDLV 127
Query: 211 KELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA 270
K LL + ++ + + + LH AA G +D+ LL +L + +G + LH AA
Sbjct: 128 KLLLSKGSDINIRDNEE-NICLHWAAFSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAA 185
Query: 271 RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA 303
R + V +S+D + +K+G+T L A
Sbjct: 186 RENRYDCVVLFLSRDSDVTLK-NKEGETPLQCA 217
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 256 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315
K+ N ++ LH+AA GH+++ LV + ++ + +T L A + + + V L
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYL 63
Query: 316 IRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
I+ +++ +D +G+T LH+A KKG +
Sbjct: 64 IKA-GALVDPKDAEGSTCLHLAAKKGHYE 91
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
GD LH+AAR V+ L D++ ++ KN+EGETPL A+
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSR-DSD-----VTLKNKEGETPLQCAS 218
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/90 (48%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
NG H+AA+ GHLEV+K LL E V D + T LH AA GH++VV LLE +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALV 282
++ NG+T LH AAR GHLEVVK L+
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGE 216
G TPL++AA +GH +V+ +L+ A + A+ NG H+AA+ GHLEV+K LL E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-E 56
Query: 217 FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
V D + T LH AA GH++VV LLE
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 12/97 (12%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAAR G+L V +L EA ++ K++ G TPL++AA +GH +V+ +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 180 QHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELL 214
+ A + A +NG H+AA+ GHLEV+K LL
Sbjct: 56 E----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
NG+T LH AAR GHLEVVK L+ + DK G+T LH+A + + ++V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQ------EAGA 348
V +D G T LH+A + G + EAGA
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ K G LHLAAR G+L V +L EA ++ K++ G TPL++AA
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAA 76
Query: 168 ESGHALIVEEMLQ 180
+GH +V+ +L+
Sbjct: 77 RNGHLEVVKLLLE 89
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AA+ GHLE+++ LL + V D S ST LH AA +GH+++V LL+ ++
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 V-NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ ++ G+TPL++AA GH IVE +L+ N
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNAEDTYGDTPLHLAARVGHLEIVEVLLK--NGAD 72
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
+ +G H+AAK+GHLE+++ LL ++ V D ST LH AA GH+++V
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEV 131
Query: 247 LLEIDSNL 254
LL+ +++
Sbjct: 132 LLKYGADV 139
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
GD LHLAAR G+L V +L++ A D G TPL++AA+ GH IVE +L
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDF------SGSTPLHLAAKRGHLEIVEVLL 100
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
++ A + A + G H+AA GHLE+++ LL ++ V D TA +
Sbjct: 101 KY----GADVNADDTIGSTPLHLAADTGHLEIVEVLL-KYGADVNAQDKFGKTAFDISID 155
Query: 238 QGHIDVVNFL 247
G+ D+ L
Sbjct: 156 NGNEDLAEIL 165
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ +N A + + G T LH AAR+GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
D G T LH+A K + +IV L++ V +D G+T LH+A G +
Sbjct: 74 NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLE 127
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D G T LH+A + + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQ 344
V L D G+T LH+A K+G +
Sbjct: 73 VNAL-DFSGSTPLHLAAKRGHLE 94
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
+G H+AA GHLE+++ LL + V D+ ST LH AA GH+++V LL+ +
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
++ + G T LH AA MGHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 105 DVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G + ++ L+ + V TD S T LH AA GH+++V LL+ +++ I
Sbjct: 21 AARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI- 78
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G T LH AA +GHLE+V+ L+ D G T LH+A + +IV L++
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 321 SVLKLEDNKGNTALHIAIKKG 341
V +D G TA I+I G
Sbjct: 138 DV-NAQDKFGKTAFDISIDNG 157
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ + G TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNATDASGLTPLHLAATYGHLEIVEVLLKH----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G H+AA GHLE+++ LL + V D T LH AA GH+++V
Sbjct: 71 ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ + G+TPL++AA GH IVE +L
Sbjct: 80 GSTPLHLAALIGHL-EIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+H A + A++ G +F ++ G+ E L E+L
Sbjct: 134 KH----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
+G H+AA GHLE+++ LL + V D+ ST LH AA GH+++V LL+ +
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
++ + G T LH AA MGHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 105 DVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIA 258
AA+ G + ++ L+ + V TD S T LH AA GH+++V LL+ D N I
Sbjct: 21 AARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 259 RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 318
G T LH AA +GHLE+V+ L+ D G T LH+A + +IV L++
Sbjct: 80 ---GSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 319 DPSVLKLEDNKGNTALHIAIKKG 341
V +D G TA I+I G
Sbjct: 136 GADV-NAQDKFGKTAFDISIDNG 157
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ + G TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNATDASGLTPLHLAATYGHLEIVEVLLKH----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G H+AA GHLE+++ LL + V D T LH AA GH+++V
Sbjct: 71 ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ + G+TPL++AA GH IVE +L
Sbjct: 80 GSTPLHLAALIGHL-EIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+H A + A++ G +F ++ G+ E L E+L
Sbjct: 134 KH----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G+ H+AA GHLE+++ LL + V D ST LH AA GH+++V LL+ ++
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ +NG T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 V-NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISINNGNEDL 161
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G + ++ L+ + V D+ T LH AA GH+++V LL+ +++
Sbjct: 21 AARAGRDDEVRILMANGAD-VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDT 78
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G T LH AA GHLE+V+ L+ + D G T LH+A + +IV L++
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 321 SVLKLEDNKGNTALHIAIKKG 341
V +D G TA I+I G
Sbjct: 138 DV-NAQDKFGKTAFDISINNG 157
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 19/133 (14%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ + A D++ G TPL++AA GH IVE +L++
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVV------GWTPLHLAAYWGHLEIVEVLLKN----G 70
Query: 187 ASIPARNGYDS-----FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
A + N YD+ H+AA GHLE+++ LL + V D + T LH AA +GH+
Sbjct: 71 ADV---NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHL 126
Query: 242 DVVNFLLEIDSNL 254
++V LL+ +++
Sbjct: 127 EIVEVLLKYGADV 139
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ K+ G TPL++AA GH IVE +L
Sbjct: 80 GSTPLHLAAHFGHL-EIVEVLLKNGAD-----VNAKDDNGITPLHLAANRGHLEIVEVLL 133
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
++ A + A++ G +F ++ G+ E L E+L
Sbjct: 134 KY----GADVNAQDKFGKTAFDISINNGN-EDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G+ H+AA GHLE+++ LL ++ L T LH AA +GH++VV LL+ N
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-TPLHLAADRGHLEVVEVLLK---N 102
Query: 254 LAKIARN--NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
A + N NG T LH AA +GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ + G TPL++AA GH IVE +L++
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNASDHVGWTPLHLAAYFGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G H+AA +GHLEV++ LL + V D + T LH AA GH+++V
Sbjct: 71 ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 13/93 (13%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V+E+L A+ ++ + G TPL++AA GH IVE +L+H
Sbjct: 84 LHLAADRGHL-EVVEVLLKNGAD-----VNANDHNGFTPLHLAANIGHLEIVEVLLKH-- 135
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 136 --GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 14/156 (8%)
Query: 127 AARAGNLSRV-MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNL 184
AARAG V + I D N + G TPL++AA SGH IVE +L+H ++
Sbjct: 21 AARAGQDDEVRILIANGADVNAV-------DNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 185 ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
+ A + G+ H+AA GHLE+++ LL ++ V D++ ST LH AA +GH+++V
Sbjct: 74 DAADV---YGFTPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIV 129
Query: 245 NFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
LL+ +++ GKT + G+ ++ K+
Sbjct: 130 EVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AA GHLE+++ LL + V D+ T LH AA GH+++V LL+ ++
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 VNAFDMT-GSTPLHLAADEGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ + N G T LH AA GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
D G T LH+A + +IV L++ V D G+T LH+A +G +
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGHLE 127
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + AR+ G+ H+AA GHLE+++ LL + V D T LH AA +GH+++V
Sbjct: 38 ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIV 96
Query: 245 NFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
LL+ +++ + ++G T LH AA+ GHLE+V+ L+ K+ + DK G+TA +++
Sbjct: 97 EVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISI 154
Query: 305 KGQNEDI 311
NED+
Sbjct: 155 DNGNEDL 161
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ + A+D G TPL++AA GH IVE +L++
Sbjct: 21 AARAGQDDEVRILMANGADVNARDF------TGWTPLHLAAHFGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A++ G H+AA++GHLE+++ LL + V +D T LH AA +GH+++V
Sbjct: 71 ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVV 278
V D + T LH AA GH+++V LL+ N A + + G T LH AAR GHLE+V
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLK---NGADVNAKDSLGVTPLHLAARRGHLEIV 96
Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
+ L+ K+ + +D G T LH+A K + +IV E++ + + + +D G TA I+I
Sbjct: 97 EVLL-KNGADVNASDSHGFTPLHLAAKRGHLEIV-EVLLKNGADVNAQDKFGKTAFDISI 154
Query: 339 KKG 341
G
Sbjct: 155 DNG 157
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V +L++ AKD L G TPL++AA GH IVE +L+ N
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSL------GVTPLHLAARRGHLEIVEVLLK--N 102
Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
+ +G+ H+AAK+GHLE+++ LL + V D TA + G+ D+
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDL 161
Query: 244 VNFL 247
L
Sbjct: 162 AEIL 165
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 292
AA G D V L+ +N A + AR+ G T LH AA GHLE+V+ L+ +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK- 76
Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
D G T LH+A + + +IV E++ + + + D+ G T LH+A K+G +
Sbjct: 77 DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLE 127
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+ GHLE+++ LL ++ V +D S T LH AA +GH+++V LL+ ++
Sbjct: 47 GITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ + G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 VNAMDY-QGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 13/130 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHL G+L ++E+L A+ ++ ++ G TPL++AA GH IVE +L++
Sbjct: 51 LHLVVNNGHL-EIIEVLLKYAAD-----VNASDKSGWTPLHLAAYRGHLEIVEVLLKY-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
A + A + GY H+AA+ GHLE+++ LL ++ V D TA + G+
Sbjct: 103 --GADVNAMDYQGYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 242 DVVNFLLEID 251
D+ L +++
Sbjct: 160 DLAEILQKLN 169
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ +N A + N+ G T LH GHLE+++ L+
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
+DK G T LH+A + +IV L++ V + D +G T LH+A + G +
Sbjct: 75 -ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLE 127
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 13/103 (12%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAA G+L ++E+L A+ ++ + +G TPL++AAE GH
Sbjct: 74 NASDKSGWTPLHLAAYRGHL-EIVEVLLKYGAD-----VNAMDYQGYTPLHLAAEDGHLE 127
Query: 174 IVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
IVE +L++ A + A++ G +F ++ G+ E L E+L
Sbjct: 128 IVEVLLKY----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G+ H+AAK GHLE+++ LL ++ V D +T LH AA GH+++V LL+ ++
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 V-NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G + ++ L+ + V TD T LH AA GH+++V LL+ +++ N
Sbjct: 21 AARAGQDDEVRILMANGAD-VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDN 78
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G T LH AA GHLE+V+ L+ + D +G T LH+A + +IV L++
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 321 SVLKLEDNKGNTALHIAIKKG 341
V +D G TA I+I G
Sbjct: 138 DV-NAQDKFGKTAFDISIDNG 157
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 13/134 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA+ G+L ++E+L A+ ++ + G TPL++AA++GH IVE +L
Sbjct: 47 GHTPLHLAAKTGHL-EIVEVLLKYGAD-----VNAWDNYGATPLHLAADNGHLEIVEVLL 100
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
+H A + A++ G+ H+AA GHLE+++ LL ++ V D TA +
Sbjct: 101 KH----GADVNAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISID 155
Query: 238 QGHIDVVNFLLEID 251
G+ D+ L +++
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ +N A + + G T LH AA+ GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
D G T LH+A + +IV L++ V +D +G T LH+A G +
Sbjct: 75 -AWDNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLE 127
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AA GHLE+++ LL + V +D+ T LH AA GH+++V LL+ ++
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ + ++G T LH AA+ G+LE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 VNAM-DSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 15/126 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
AARAG V ++ + D N A + G TPL++AA SGH IVE +L+H
Sbjct: 21 AARAGQDDEVRILMANGADVNAA-------DNTGTTPLHLAAYSGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
A + A + GY H+AA GHLE+++ LL + V D T LH AA G++++
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEI 128
Query: 244 VNFLLE 249
V LL+
Sbjct: 129 VEVLLK 134
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA +G+L V +L+ +A D+ G TPL++AA GH IVE +L
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF------GYTPLHLAAYWGHLEIVEVLL 100
Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG 239
+ N + +G H+AAK G+LE+++ LL + V D TA + G
Sbjct: 101 K--NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNG 157
Query: 240 HIDVVNFLLEID 251
+ D+ L +++
Sbjct: 158 NEDLAEILQKLN 169
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ A N G T LH AA GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHS 351
+D G T LH+A + +IV L++ V + D+ G T LH+A K G +
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM-DSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 352 KDHGKPPSATKQLKQTVSDIKHD 374
HG +A + +T DI D
Sbjct: 135 --HGADVNAQDKFGKTAFDISID 155
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 83
Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
G E++K LLG+ + C T LH AA++ ++ LLE +N + T
Sbjct: 84 GRDEIVKALLGKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEAT 141
Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE--LIRPDPSV 322
+H AA G+L+++ L+ ST + D +G T LH+A +E+ V E L+ +
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLAC---DEERVEEAKLLVSQGAS 197
Query: 323 LKLEDNKGNTALHIA 337
+ +E+ + T L +A
Sbjct: 198 IYIENKEEKTPLQVA 212
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 34/177 (19%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
A G LE LKE + +L TD TALH A + GH ++V FLL++ + +
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
G + LH AA G E+VKAL+ K ++ G T LH A +I + L+
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 318 PDP----------------------------SVLKLEDNKGNTALHIAIKKGRTQEA 346
PD + ++D +GNT LH+A + R +EA
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA 188
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 31 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 84
Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
G E++K LLG+ + C T LH AA++ ++ LLE +N + T
Sbjct: 85 GRDEIVKALLGKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEAT 142
Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE--LIRPDPSV 322
+H AA G+L+++ L+ ST + D +G T LH+A +E+ V E L+ +
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLAC---DEERVEEAKLLVSQGAS 198
Query: 323 LKLEDNKGNTALHIA 337
+ +E+ + T L +A
Sbjct: 199 IYIENKEEKTPLQVA 213
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 34/177 (19%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
A G LE LKE + +L TD TALH A + GH ++V FLL++ + +
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 73
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
G + LH AA G E+VKAL+ K ++ G T LH A +I + L+
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 318 PDP----------------------------SVLKLEDNKGNTALHIAIKKGRTQEA 346
PD + ++D +GNT LH+A + R +EA
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA 189
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
Query: 193 NGYDSF-----HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
N YD + H+AA GHLE+++ LL + V D + +T LH AA+ GH+++V L
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLHLAASLGHLEIVEVL 87
Query: 248 LEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG 306
L+ +++ AK A G T L+ AA GHLE+V+ L+ + DK G+TA +++
Sbjct: 88 LKYGADVNAKDA--TGITPLYLAAYWGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDI 144
Query: 307 QNEDI 311
NED+
Sbjct: 145 GNEDL 149
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
T LH AAA GH+++V LL +++ + NG T LH AA +GHLE+V+ L+
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAV-DTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
+ D G T L++A + +IV L++ V +D G TA I+I G
Sbjct: 96 AK-DATGITPLYLAAYWGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDIG 145
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
AARAG V ++ + DAN + G TPL++AA GH IVE +L+ N
Sbjct: 9 AARAGQDDEVRILMANGADAN-------AYDHYGRTPLHMAAAVGHLEIVEVLLR--NGA 59
Query: 186 TASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVN 245
+ NG H+AA GHLE+++ LL ++ V D + T L+ AA GH+++V
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 246 FLLE 249
LL+
Sbjct: 119 VLLK 122
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ ++ A + G+T LH AA +GHLE+V+ L+
Sbjct: 6 LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-A 63
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHS 351
D G T LH+A + +IV L++ V +D G T L++A G +
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 352 KDHGKPPSATKQLKQTVSDIKHDVQSQ 378
HG +A + +T DI D+ ++
Sbjct: 123 --HGADVNAQDKFGKTAFDISIDIGNE 147
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ K+ G TPLY+AA GH IVE +L
Sbjct: 68 GTTPLHLAASLGHL-EIVEVLLKYGAD-----VNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+H A + A++ G +F ++ G+ E L E+L
Sbjct: 122 KH----GADVNAQDKFGKTAFDISIDIGN-EDLAEIL 153
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 16/181 (8%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS--FHVAAKQGHLEVLKEL 213
+Q+G +PL+VAA G A ++ +L+H A+ ARN + H+A +QGH +V+K L
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKH----GANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 214 LGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271
L PN DLS +T L A + GH ++V LL+ +++ + N G T LH A
Sbjct: 139 LDSNAKPN---KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVI 194
Query: 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN 331
H+ VV+ L+ S +K+ +TA+ A QN I +EL++ PS + D+
Sbjct: 195 EKHVFVVELLLLHGASVQV-LNKRQRTAVDCA--EQNSKI-MELLQVVPSCVASLDDVAE 250
Query: 332 T 332
T
Sbjct: 251 T 251
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV-LHSAARMGHLEVVKALVSKDPS 287
S+ LH AA G D++ LL+ +N ARN + V LH A + GH +VVK L+ +
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAG--ARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
+ D G T L A G + ++V L++ S+ +NKGNTALH A+
Sbjct: 145 PN-KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAV 193
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLA + G+ V +L S AK +KK+ G TPL A GH +V +LQH
Sbjct: 123 LHLACQQGHFQVVKCLLDS----NAKP--NKKDLSGNTPLIYACSGGHHELVALLLQH-- 174
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
ASI A N G + H A + H+ V++ LL
Sbjct: 175 --GASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ + +G TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNAHDDQGSTPLHLAAWIGHPEIVEVLLKH----G 70
Query: 187 ASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + AR +G+ H+AA GHLE+++ LL ++ V D T LH AA +GH+++V
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIV 129
Query: 245 NFLLE 249
LL+
Sbjct: 130 EVLLK 134
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AA GH E+++ LL + V D T LH AA GH+++V LL+ ++
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 106 V-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 13/135 (9%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
+G LHLAA G+ ++E+L A+ ++ ++ +G TPL++AA++GH IVE +
Sbjct: 46 QGSTPLHLAAWIGH-PEIVEVLLKHGAD-----VNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 179 LQHMNLETASIPARNGY--DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236
L++ A + A++ Y H+AA +GHLE+++ LL + V D TA +
Sbjct: 100 LKY----GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154
Query: 237 AQGHIDVVNFLLEID 251
G+ D+ L +++
Sbjct: 155 DNGNEDLAEILQKLN 169
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ + G T LH AA +GH E+V+ L+ R
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHS 351
D G T LH+A + +IV L++ V +D G T LH+A +G +
Sbjct: 77 -DTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 352 KDHGKPPSATKQLKQTVSDIKHD 374
HG +A + +T DI D
Sbjct: 135 --HGADVNAQDKFGKTAFDISID 155
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 182 MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
+N E AS G+ H+AA GHLE+++ LL + V D + T L AA GH+
Sbjct: 40 VNAEDAS-----GWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHL 93
Query: 242 DVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
++V LL+ N A + N+ G T LH AA GHLE+V+ L+ + DK G+TA
Sbjct: 94 EIVEVLLK---NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTA 149
Query: 300 LHMAVKGQNEDI 311
+++ NED+
Sbjct: 150 FDISIDNGNEDL 161
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ ++ G TPL++AA +GH IVE +L+ N
Sbjct: 21 AARAGRDDEV-RILMANGAD-----VNAEDASGWTPLHLAAFNGHLEIVEVLLK--NGAD 72
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
+ G +AA GHLE+++ LL + V D+ T LH AA GH+++V
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 247 LLE 249
LL+
Sbjct: 132 LLK 134
Score = 36.6 bits (83), Expect = 0.036, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AA GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNA 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
D G T L +A + +IV E++ + + + D +G+T LH+A G +
Sbjct: 76 VDHAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G L LAA G+L V +L++ A D+ EG TPL++AA GH IVE +L
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDM------EGHTPLHLAAMFGHLEIVEVLL 133
Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL 214
+ N + + G +F ++ G+ E L E+L
Sbjct: 134 K--NGADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
+G H+AA +GHLE+++ LL + V D T LH AA GH+++V LL+ +
Sbjct: 46 SGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
++ G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 105 DV-NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ ++ G+TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
A+ + G H+AA GHLE+++ LL + V TD T LH AA GH+++V
Sbjct: 75 AA--DKMGDTPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 247 LLEIDSNL 254
LL+ +++
Sbjct: 132 LLKYGADV 139
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ ++GKT LH AA GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
DK G T LH+A + +IV E++ + + + D G T LH+A G +
Sbjct: 76 ADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLE 127
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 13/103 (12%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K GD LHLAA G+L ++E+L A+ ++ + G TPL++AA++GH
Sbjct: 74 NAADKMGDTPLHLAALYGHL-EIVEVLLKNGAD-----VNATDTYGFTPLHLAADAGHLE 127
Query: 174 IVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
IVE +L++ A + A++ G +F ++ G+ E L E+L
Sbjct: 128 IVEVLLKY----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 165
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 13/160 (8%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 83
Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
G E++K LL + ++ C T LH AA++ ++ LLE +N + T
Sbjct: 84 GRDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDAT 141
Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+H AA G+L++V L+ ST + D +G T LH+A
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLAC 180
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 34/177 (19%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
A G L+ LKE + +L TD TALH A + GH ++V FLL++ + +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
G + LH AA G E+VKAL+ K ++ G T LH A +I + L+
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 318 PDP----------------------------SVLKLEDNKGNTALHIAIKKGRTQEA 346
PD + ++D +GNT LH+A + R +EA
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 13/160 (8%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 83
Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
G E++K LL + ++ C T LH AA++ ++ LLE +N + T
Sbjct: 84 GXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDAT 141
Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+H AA G+L++V L+ ST + D +G T LH+A
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLAC 180
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 34/177 (19%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
A G L+ LKE + +L TD TALH A + GH ++V FLL++ + +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
G + LH AA G E+VKAL+ K ++ G T LH A +I + L+
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 318 PDP----------------------------SVLKLEDNKGNTALHIAIKKGRTQEA 346
PD + ++D +GNT LH+A + R +EA
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 4/144 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G+ + +K+L+ + V +D T LH AA GH +VV L+ +++ +
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDS 68
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
+G+T LH AA GH EVVK L+SK + D G+T LH A + ++++V LI
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQ 344
V D+ G T L +A + G +
Sbjct: 128 DV-NTSDSDGRTPLDLAREHGNEE 150
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 16/152 (10%)
Query: 98 ERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQ 157
+R I G DS G+ LH AA G+ V+++L S A+ ++ K+
Sbjct: 18 DRVKDLIENGADVNASDSDGRT---PLHHAAENGH-KEVVKLLISKGAD-----VNAKDS 68
Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLG 215
+G TPL+ AAE+GH +V+ ++ + A + A+ +G H AA+ GH EV+K L+
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
+ + V T+D T L A G+ +VV L
Sbjct: 125 KGAD-VNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLG 215
N GET L++A+ G VE +LQ N ++ G+ H A GHL+V+ ELL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVV-ELLL 63
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL 248
+ LV TT + LH AA GH+D+V LL
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
RG+ LH+A+ G++ V +LQ+ KD G TPL+ A GH +VE +
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKD------HAGWTPLHEACNHGHLKVVELL 62
Query: 179 LQHMNLETASIPARNGYDS---FHVAAKQGHLEVLKELL 214
LQH L + GY + H AAK GH++++K LL
Sbjct: 63 LQHKALVNTT-----GYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 194 GYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
G H+A+ +G + ++ LL G PN+ D + T LH A GH+ VV LL+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
+ + N + LH AA+ GH+++VK L+S
Sbjct: 67 ALVNTTGYQN-DSPLHDAAKNGHVDIVKLLLS 97
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
LH A G+L V +LQ K L++ + ++PL+ AA++GH IV+ +L +
Sbjct: 47 LHEACNHGHLKVVELLLQH------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
V TD + T LH AAA G +++V LL+ +++ + + G T LH AA GHLE+V+
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEV 90
Query: 281 LVSKDPSTGFRTDKKGQTALHM-AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 339
L+ D+ G T LH+ A+ GQ E ++E++ + + +D G TA I+I
Sbjct: 91 LLKHGADVN-AYDRAGWTPLHLAALSGQLE--IVEVLLKHGADVNAQDALGLTAFDISIN 147
Query: 340 KGR 342
+G+
Sbjct: 148 QGQ 150
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G L ++E+L A+ ++ + G TPL++AA GH IVE +L+H
Sbjct: 43 LHLAAANGQL-EIVEVLLKNGAD-----VNASDSAGITPLHLAAYDGHLEIVEVLLKH-- 94
Query: 184 LETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
A + A R G+ H+AA G LE+++ LL + V D TA + QG
Sbjct: 95 --GADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD-VNAQDALGLTAFDISINQGQE 151
Query: 242 DVVNFL 247
D+ L
Sbjct: 152 DLAEIL 157
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLG 215
+ G TPL++AA +G IVE +L++ AS A G H+AA GHLE+++ LL
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA--GITPLHLAAYDGHLEIVEVLLK 93
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
+ V D + T LH AA G +++V LL+
Sbjct: 94 HGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 278
V D + T LH AA +GH+++V LL+ D N + I G+T LH AA +GHLE+V
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW---GRTPLHLAATVGHLEIV 96
Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+ L+ + DK G+TA +++ NED+
Sbjct: 97 EVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
A RAG V ++ + D N D G TPL++AA+ GH IVE +L+H
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD-------AGVTPLHLAAKRGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
A + A + G H+AA GHLE+++ LL E+ V D TA + G+ D+
Sbjct: 70 GADVNASDIWGRTPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 244 VNFLLEID 251
L +++
Sbjct: 129 AEILQKLN 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AAK+GHLE+++ LL + V +D+ T LH AA GH+++V LLE ++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 254 L 254
+
Sbjct: 106 V 106
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L A G D V L+ +++ + + G T LH AA+ GHLE+V+ L+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAM-DDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
+D G+T LH+A + +IV L+ V +D G TA I+I G
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNG 124
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA+ G+L V +L+ A D+ G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIW------GRTPLHLAATVGHLEIVEVLLEY-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 103 --GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALI 174
S D QL AA+AG++ V ++ N +D+ +++ TPL+ AA +
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSV 59
Query: 175 VEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL 232
VE +LQH A + A++ G H A GH EV ELL + +V DL T L
Sbjct: 60 VEYLLQH----GADVHAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPL 114
Query: 233 HTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
H AAA+G ++ LL+ ++ K R +G T L
Sbjct: 115 HEAAAKGKYEICKLLLQHGADPTKKNR-DGNTPL 147
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AAK G +E +K+L + ST LH AA + VV +LL+ +++ A++
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH--AKD 74
Query: 261 NGKTV-LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH-MAVKGQNEDIVLELIR- 317
G V LH+A GH EV + LV D T LH A KG+ E L L
Sbjct: 75 KGGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHG 133
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRT 343
DP+ ++ GNT L + +K G T
Sbjct: 134 ADPTK---KNRDGNTPLDL-VKDGDT 155
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
V D + T LH AA +GH+++V LL+ +++ + + G+T LH AA +GHLE+V+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEV 98
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
L+ + DK G+TA +++ NED+
Sbjct: 99 LLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
A RAG V ++ + D N D G TPL++AA+ GH IVE +L+H
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD-------AGVTPLHLAAKRGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
A + A + G H+AA GHLE+++ LL E+ V D TA + G+ D+
Sbjct: 70 GADVNASDSWGRTPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 244 VNFLLEID 251
L +++
Sbjct: 129 AEILQKLN 136
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L A G D V L+ +++ + + G T LH AA+ GHLE+V+ L+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAM-DDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
+D G+T LH+A + +IV L+ V +D G TA I+I G
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNG 124
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 13/93 (13%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA+ G+L ++E+L A+ ++ + G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAKRGHL-EIVEVLLKHGAD-----VNASDSWGRTPLHLAATVGHLEIVEVLLEY-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 103 --GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
D QL AA+AG++ V ++ N +D+ +++ TPL+ AA +VE +L
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 62
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
QH A + A++ G H A GH EV ELL + +V DL T LH AAA
Sbjct: 63 QH----GADVHAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+G ++ LL+ ++ K R +G T L
Sbjct: 118 KGKYEICKLLLQHGADPTKKNR-DGNTPL 145
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AAK G +E +K+L + ST LH AA + VV +LL+ +++ A++
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH--AKD 72
Query: 261 NGKTV-LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH-MAVKGQNEDIVLELIR- 317
G V LH+A GH EV + LV D T LH A KG+ E L L
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRT 343
DP+ ++ GNT L + +K G T
Sbjct: 132 ADPTK---KNRDGNTPLDL-VKDGDT 153
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 198 FHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS--- 252
H+A E+ + LLG P L D +T LH A QG + V L + +
Sbjct: 46 LHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 253 --NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 310
++ K NG T LH A+ G+L +V+ LVS + G+TALH+AV QN D
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 311 IVLELIR 317
+V L++
Sbjct: 163 LVSLLLK 169
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 102 SFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET 161
+ +G G + +D RG+ LHLA G L+ V + QSC +L N G T
Sbjct: 60 ALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 116
Query: 162 PLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA 201
L++A+ G+ IV E+L + + + NG + H+A
Sbjct: 117 CLHLASIHGYLGIV-ELLVSLGADVNAQEPCNGRTALHLA 155
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 7/137 (5%)
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+EV++++ G+ L +L T LH A ++ LL + ++ G T L
Sbjct: 22 MEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPL 79
Query: 267 HSAARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
H A G L V L + T+ G T LH+A IV L+
Sbjct: 80 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 139
Query: 322 VLKLEDNKGNTALHIAI 338
V E G TALH+A+
Sbjct: 140 VNAQEPCNGRTALHLAV 156
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 297 QTALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTALHIAIKKGRTQEAG 347
QT LH+AV +I L+ DP +L D +GNT LH+A ++G G
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVG 92
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 203 KQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
K G+ E+ + LL G P+L D + + +H AA G +D + LLE +++ I N
Sbjct: 46 KLGNPEIARRLLLRGANPDL---KDRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDN 101
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA-VKGQNEDIVL 313
G LH AA+ GHL VV+ LV S + KG TA +A + G+NE + L
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G+ +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
R G H AA+ G L+ L+ LL EF V D + LH AA +GH+ VV FL++
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
++ + G T A G EVV +
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA +G LE L LL N+ TAL G+ ++ LL +N +
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVMKL-GNPEIARRLLLRGAN-PDLKDR 68
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G V+H AAR G L+ ++ L+ D +G LH+A K + +V L++
Sbjct: 69 TGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQ 344
S + ++KG+TA +A GR +
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 198 FHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS--- 252
H+A E+ + LLG P L D +T LH A QG + V L + +
Sbjct: 49 LHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 253 --NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 310
++ K NG T LH A+ G+L +V+ LVS + G+TALH+AV QN D
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 311 IVLELIR 317
+V L++
Sbjct: 166 LVSLLLK 172
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 102 SFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET 161
+ +G G + +D RG+ LHLA G L+ V + QSC +L N G T
Sbjct: 63 ALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 162 PLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA 201
L++A+ G+ IV E+L + + + NG + H+A
Sbjct: 120 CLHLASIHGYLGIV-ELLVSLGADVNAQEPCNGRTALHLA 158
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 7/137 (5%)
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+EV++++ G+ L +L T LH A ++ LL + ++ G T L
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPL 82
Query: 267 HSAARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
H A G L V L + T+ G T LH+A IV L+
Sbjct: 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 142
Query: 322 VLKLEDNKGNTALHIAI 338
V E G TALH+A+
Sbjct: 143 VNAQEPCNGRTALHLAV 159
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 297 QTALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTALHIAIKKGRTQEAG 347
QT LH+AV +I L+ DP +L D +GNT LH+A ++G G
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVG 95
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 15/194 (7%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
G TPL+ A + IVE +L+H + +NG F +AA G +++LK L +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSA 269
+ V D TA AA G + + FL + +N+ + R G T L A
Sbjct: 97 D-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLE 326
A GH+EV+K L+ + + D G+ AL H + + D+ + L+ + + +
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215
Query: 327 DNKGNTALHIAIKK 340
+G T L +A++K
Sbjct: 216 GERGKTPLILAVEK 229
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL-HTAAAQGHIDV---VNFL 247
+ G + AA++GH+EVLK LL E V D AL H + DV + L
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205
Query: 248 LEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK 305
L+ +++ + GKT L A HL +V+ L+ ++ TD G+TAL +AV+
Sbjct: 206 LDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLK 324
+++V+ L+ + F+ ++ G T LH AV+ EDIV L+R DP + K
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 69
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 153 SKKNQE-----GETPLYVAAESGHALIVEEMLQHMNLETASIP--ARNGYDSFHVAAKQG 205
+K++QE G T L AAE GH +++ +L M + + RN +++
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 206 HLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV 265
+E + LL + V T L A + H+ +V LLE + ++GKT
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256
Query: 266 LHSAARMGHLEVVKALVSKDPST 288
L A + ++ + L + ST
Sbjct: 257 LLLAVELKLKKIAELLCKRGAST 279
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
D QL AA+AG++ V ++ N +D+ +++ TPL+ AA +VE +L
Sbjct: 12 ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 66
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
QH A + A++ G H A GH EV ELL + +V DL T LH AAA
Sbjct: 67 QH----GADVHAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAA 121
Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+G ++ LL+ ++ K R +G T L
Sbjct: 122 KGKYEICKLLLQHGADPTKKNR-DGNTPL 149
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AAK G +E +K+L + ST LH AA + VV +LL+ +++ A++
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH--AKD 76
Query: 261 NGKTV-LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH-MAVKGQNEDIVLELIR- 317
G V LH+A GH EV + LV D T LH A KG+ E L L
Sbjct: 77 KGGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHG 135
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRT 343
DP+ ++ GNT L + +K G T
Sbjct: 136 ADPTK---KNRDGNTPLDL-VKDGDT 157
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKALVSKDPST 288
T LH AA +GH+++V LL+ +++ AR+ G+T LH AA +GHLE+V+ L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVN--ARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 289 GFRTDKKGQTALHMAVKGQNEDI 311
+ DK G+TA +++ NED+
Sbjct: 107 NAQ-DKFGKTAFDISIDNGNEDL 128
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
A RAG V ++ + D N D G TPL++AA+ GH IVE +L+H
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD-------AGVTPLHLAAKRGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
A + AR+ G H+AA GHLE+++ LL E+ V D TA + G+ D+
Sbjct: 70 GADVNARDIWGRTPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 244 VNFLLEID 251
L +++
Sbjct: 129 AEILQKLN 136
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
G H+AAK+GHLE+++ LL + V D+ T LH AA GH+++V LLE ++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 254 L 254
+
Sbjct: 106 V 106
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L A G D V L+ +++ + + G T LH AA+ GHLE+V+ L+ R
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAM-DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
D G+T LH+A + +IV L+ V +D G TA I+I G
Sbjct: 77 -DIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNG 124
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA+ G+L V +L+ A+D+ G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIW------GRTPLHLAATVGHLEIVEVLLEY-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 103 --GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G + ++ L+ + V D +T LH AA H+++V LL+ +++ N
Sbjct: 21 AARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDN 78
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
+G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ +++G TPL++AA+ H IVE +L+H
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNANDRKGNTPLHLAADYDHLEIVEVLLKH----G 70
Query: 187 ASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A +G H+AA GHLE+++ LL + V D TA + G+ D+
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLA 129
Query: 245 NFLLEID 251
L +++
Sbjct: 130 EILQKLN 136
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 13/99 (13%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
++G+ LHLAA +L ++E+L A+ ++ + +G TPL++AA GH IVE
Sbjct: 45 RKGNTPLHLAADYDHL-EIVEVLLKHGAD-----VNAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 178 MLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+L+H A + A++ G +F ++ G+ E L E+L
Sbjct: 99 LLKH----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D+KG T LH+A + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 374
V DN G+T LH+A G + HG +A + +T DI D
Sbjct: 73 V-NAHDNDGSTPLHLAALFGHLEIVEVLLK--HGADVNAQDKFGKTAFDISID 122
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK 256
S H A QG L+ LKE L + NLV D T L A+A G I+ V FLLE ++
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 257 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
+A+ ++ L A+ G+ ++V L+ +D D G T L AV+G + V E +
Sbjct: 65 LAKER-ESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKCV-EAL 121
Query: 317 RPDPSVLKLEDNKGNTALHIAIKKG 341
+ L E + G T + +A+ G
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALG 146
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS--KDP 286
S ++H AAQG +D + L NL G T L A+ G +E V+ L+ DP
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 339
K+ ++AL +A G DIV L+ D + + D G T L A++
Sbjct: 63 HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVR 111
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 15/194 (7%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
G TPL+ A + IVE +L+H + +NG F +AA G +++LK L +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSA 269
+ V D TA AA G + + FL + +N+ + R G T L A
Sbjct: 117 D-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175
Query: 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLE 326
A GH+EV+K L+ + + D G+ AL H + + D+ + L+ + + +
Sbjct: 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 235
Query: 327 DNKGNTALHIAIKK 340
+G T L +A++K
Sbjct: 236 GERGKTPLILAVEK 249
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL-HTAAAQGHIDV---VNFL 247
+ G + AA++GH+EVLK LL E V D AL H + DV + L
Sbjct: 166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 225
Query: 248 LEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK 305
L+ +++ + GKT L A HL +V+ L+ ++ TD G+TAL +AV+
Sbjct: 226 LDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 282
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLK 324
+++V+ L+ + F+ ++ G T LH AV+ EDIV L+R DP + K
Sbjct: 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 89
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 153 SKKNQE-----GETPLYVAAESGHALIVEEMLQHMNLETASIP--ARNGYDSFHVAAKQG 205
+K++QE G T L AAE GH +++ +L M + + RN +++
Sbjct: 157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216
Query: 206 HLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV 265
+E + LL + V T L A + H+ +V LLE + ++GKT
Sbjct: 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 276
Query: 266 LHSAARMGHLEVVKALVSKDPST 288
L A + ++ + L + ST
Sbjct: 277 LLLAVELKLKKIAELLCKRGAST 299
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 203 KQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
K G+ E+ + LL G P+L D + +H AA G +D + LLE +++ I N
Sbjct: 46 KLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDN 101
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA-VKGQNEDIVL 313
G LH AA+ GHL VV+ LV S + KG TA +A + G+NE + L
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
R G+ H AA+ G L+ L+ LL EF V D + LH AA +GH+ VV FL++
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
++ + G T A G EVV +
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA +G LE L LL N+ TAL G+ ++ LL +N +
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVMKL-GNPEIARRLLLRGAN-PDLKDR 68
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G V+H AAR G L+ ++ L+ D +G LH+A K + +V L++
Sbjct: 69 TGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQ 344
S + ++KG+TA +A GR +
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 203 KQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
K G+ E+ + LL G P+L D + +H AA G +D + LLE +++ I N
Sbjct: 46 KLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDN 101
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA-VKGQNEDIVL 313
G LH AA+ GHL VV+ LV S + KG TA +A + G+NE + L
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
R G+ H AA+ G L+ L+ LL EF V D + LH AA +GH+ VV FL++
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
++ + G T A G EVV +
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA +G LE L LL N+ TAL G+ ++ LL +N +
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVMKL-GNPEIARRLLLRGAN-PDLKDR 68
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G V+H AAR G L+ ++ L+ D +G LH+A K + +V L++
Sbjct: 69 TGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQ 344
S + ++KG+TA +A GR +
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNE 151
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 203 KQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
K G+ E+ + LL G P+L D + +H AA G +D + LLE +++ I N
Sbjct: 46 KLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDN 101
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA-VKGQNEDIVL 313
G LH AA+ GHL VV+ LV S + KG TA +A + G+NE + L
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
R G+ H AA+ G L+ L+ LL EF V D + LH AA +GH+ VV FL++
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
++ + G T A G EVV +
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA +G LE L LL N+ TAL G+ ++ LL +N +
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVMKL-GNPEIARRLLLRGAN-PDLKDR 68
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G V+H AAR G L+ ++ L+ D +G LH+A K + +V L++
Sbjct: 69 TGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQ 344
S + ++KG+TA +A GR +
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNE 151
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
V D T LH AA GH+++V LL+ +++ N G+T LH AA HLE+V+
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADHLEIVEV 98
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
L+ + DK G+TA +++ NED+
Sbjct: 99 LLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L +N A + N+ G T LH AA +GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGQDDEVRIL---TANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
T G+T LH+A + +IV L++ V +D G TA I+I G
Sbjct: 74 NATGNTGRTPLHLAAWADHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNG 124
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ G TPL++AA + H IVE +L
Sbjct: 47 GHTPLHLAAMLGHL-EIVEVLLKNGAD-----VNATGNTGRTPLHLAAWADHLEIVEVLL 100
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+H A + A++ G +F ++ G+ E L E+L
Sbjct: 101 KH----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 198 FHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA 255
H A +QGHL ++ +L+ G P+L+ SC +H AA GH +V +L+ ++
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC---IHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 256 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315
+ +N ++ +A R ++ + L++ + S TALH AV N ++ L
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
Query: 316 IRPDPSVLKLEDNKGNTALHIA 337
+ +V ++ KG +AL +A
Sbjct: 197 LEAGANV-DAQNIKGESALDLA 217
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 90/228 (39%), Gaps = 53/228 (23%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
A + G E +EL+ E V D T LH AA ID+V + + + + ++ +
Sbjct: 16 ATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 261 NGKTVLHSAARMGHLEVVKALV--SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 318
T LH A R GHL +V L+ DPS D +G + +H+A + + IV LI
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 319 -------------------------DPSVLKLEDN---------KGNTALHIAIKKGRTQ 344
DP+ L L N NTALH A+ G T
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 345 ------EAGAAHSKDHGKPPSATKQLKQ--TVSDIKHDVQSQLQQSRQ 384
EAGA + K SA KQ V I H LQ++RQ
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINH-----LQEARQ 234
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNL 220
TPL+ A GH +V +++++ S+ G H+AA+ GH ++ L+ + ++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYG--ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 221 VMTTDLSCSTALHTAAAQGH-IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK 279
M D + T L AA + H +D LL + ++ + + T LH A G+ V+
Sbjct: 136 DM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQN 308
L+ + + + KG++AL +A + +N
Sbjct: 195 LLLEAGANVDAQ-NIKGESALDLAKQRKN 222
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 120 GDLQ---LHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAAESGHALIV 175
GDL LH A R G+LS V+++++ D S + EG + +++AA+ GH IV
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADP-------SLIDGEGCSCIHLAAQFGHTSIV 125
Query: 176 EEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTD-LSCSTALHT 234
++ + + +NG AA + H LL F V D +TALH
Sbjct: 126 AYLIA--KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Query: 235 AAAQGHIDVVNFLLEIDSNL 254
A G+ V++ LLE +N+
Sbjct: 184 AVLAGNTTVISLLLEAGANV 203
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Query: 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK 256
S H A QG L+ LKE L + NLV D T L A+A G I+ V FLLE ++
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 257 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
+A+ ++ L A+ G+ ++V L+ +D D G T L AV G + V E +
Sbjct: 65 LAKER-ESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVHGNHVKCV-EAL 121
Query: 317 RPDPSVLKLEDNKGNTALHIAIKKG 341
+ L E + G T + +A+ G
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALG 146
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS--KDP 286
S ++H AAQG +D + L NL G T L A+ G +E V+ L+ DP
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
K+ ++AL +A G DIV L+ D + + D G T L A+
Sbjct: 63 HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAV 110
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA+ G + ++ L+ + V D T LH AA GH+++V LL+ +++ N
Sbjct: 21 AARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDN 78
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
G T LH AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ +++G TPL++AA+ GH IVE +L++
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNALDEDGLTPLHLAAQLGHLEIVEVLLKY----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G H+AA +GHLE+++ LL + V D TA + G+ D+
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLA 129
Query: 245 NFLLEID 251
L +++
Sbjct: 130 EILQKLN 136
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ + + G T LH AA++GHLE+V+ L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGADVN-A 75
Query: 292 TDKKGQTALHM-AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
D G T LH+ A++G E ++E++ + + +D G TA I+I G
Sbjct: 76 EDNFGITPLHLAAIRGHLE--IVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ D+ G T LH+A + + +IV L++
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 374
V EDN G T LH+A +G + HG +A + +T DI D
Sbjct: 73 V-NAEDNFGITPLHLAAIRGHLEIVEVLLK--HGADVNAQDKFGKTAFDISID 122
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 203 KQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
K G+ E+ + LL G P+L D + +H AA G +D + LLE +++ I N
Sbjct: 46 KLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDN 101
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA-VKGQNEDIVL 313
G LH AA+ GHL VV+ LV S + KG TA +A + G+NE + L
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE 168
R N D + G +H AARAG ++ LQ+ N+A ++ ++ EG PL++AA+
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAG----FLDTLQTLLENQAD--VNIEDNEGNLPLHLAAK 112
Query: 169 SGHALIVEEMLQH 181
GH +VE +++H
Sbjct: 113 EGHLRVVEFLVKH 125
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA +G LE L LL N+ TAL G+ ++ LL +N +
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVMKL-GNPEIARRLLLRGAN-PDLKDR 68
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
G V+H AAR G L+ ++ L+ D +G LH+A K + +V L++
Sbjct: 69 TGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQ 344
S + ++KG+TA +A GR +
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNE 151
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
R G+ H AA+ G L+ L+ LL E V D + LH AA +GH+ VV FL++
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLL-ENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
++ + G T A G EVV +
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L +AAA+G ++ + LL+ + N+ G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
D+ G +H A + D + L+ V +EDN+GN LH+A K+G
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEG 114
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 191 ARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
+++G H AAK GH E +K+LL + + V +T LH AA GH ++V LL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 292
+++ ++ +G T H A + GH E+VK L +K R+
Sbjct: 65 GADVNARSK-DGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
+G T LH+AA+ GH E VK L+SK R+ K G T LH+A K + +IV +L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 321 SVLKLEDNKGNTALHIAIKKG 341
+ + GNT H+A K G
Sbjct: 66 ADVNARSKDGNTPEHLAKKNG 86
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 24/104 (23%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK------KNQEGETPLYVAAESGH 171
K G+ LH AA+ G+ A E K LLSK ++++G TPL++AA++GH
Sbjct: 7 KDGNTPLHNAAKNGH------------AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54
Query: 172 ALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKEL 213
A IV+ +L + A + AR +G H+A K GH E++K L
Sbjct: 55 AEIVKLLLA----KGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKEL 213
+++G TPL+ AA++GHA V+++L + A + AR +G H+AAK GH E++K L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 214 LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
L + + V +T H A GH ++V L
Sbjct: 62 LAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 294 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ------EAG 347
K G T LH A K + + V +L+ V GNT LH+A K G + G
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 348 A---AHSKDHGKPPSATKQ 363
A A SKD P K+
Sbjct: 66 ADVNARSKDGNTPEHLAKK 84
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 188 SIPARNGYDSFHVAAKQGHLEVLKELL-------------GEFPNLVMTTDLSCSTALHT 234
+I NG + H + + V+++LL G P ++ TAL T
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML--------TALAT 156
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 294
Q I+ V L + N+ A G+T L A G ++VVKAL++ + + D
Sbjct: 157 LKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DD 214
Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHSK 352
G TAL A + +++I L+ + L D G+TAL +A+ G+++ A +S+
Sbjct: 215 DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 39/132 (29%)
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKAL-------VSKDPSTGF---------------- 290
+ IA +NG T LH + + VV+ L V K G+
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 291 ---------------RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 335
+ + GQTAL +AV D+V L+ + V ++D+ G+TAL
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALM 221
Query: 336 IAIKKGRTQEAG 347
A + G + AG
Sbjct: 222 CACEHGHKEIAG 233
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
TALH A ++D+V FL+E +N+ + N G LH+AA G+L++ + L+S+ G
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 290 FRTDKKGQTALHM------AVKGQNE----DIVLELIRPDPSVLKLEDNK---------- 329
+ +G T L + QNE + +E R + + L D +
Sbjct: 134 A-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 330 ------GNTALHIAIKKGRTQ 344
G TALH+A KG T+
Sbjct: 193 VRHAKSGGTALHVAAAKGYTE 213
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 39/198 (19%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E N + P G + LH AA G L + E L S A+ + N EG+TPL +A
Sbjct: 94 ENGANINQPDNEGWIPLHAAASCGYLD-IAEYLISQGAH-----VGAVNSEGDTPLDIAE 147
Query: 168 ESGHALIVEEML--QHMNLETASIP-----------------------ARNGYDSFHVAA 202
E +++ + Q +++E A A++G + HVAA
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA 207
Query: 203 KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN- 261
+G+ EVLK LL + V D T LH AA G + L+E NL + N
Sbjct: 208 AKGYTEVLK-LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE---NLCDMEAVNK 263
Query: 262 -GKTVLHSAAR--MGHLE 276
G+T A +G+LE
Sbjct: 264 VGQTAFDVADEDILGYLE 281
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA+ G+ S +L++ + +A+ + + TPL++AA GHA IVE +L+H
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR------TPLHMAASEGHANIVEVLLKH-- 89
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
A + A++ + H A + H EV+ ELL ++ V T C TA + G+
Sbjct: 90 --GADVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
Query: 242 DVVNFL 247
D+ L
Sbjct: 147 DLAEIL 152
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKA 280
TTD ++ LH AA GH LL + +++ AR +T LH AA GH +V+
Sbjct: 28 FTTDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAASEGHANIVEV 85
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
L+ + D TALH A + ++++V LI+ V + TA I+I
Sbjct: 86 LLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDN 143
Query: 341 G 341
G
Sbjct: 144 G 144
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE--ID 251
G H+AA+ GH + LL + T + T LH AA++GH ++V LL+ D
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHGAD 92
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
N + + T LH A H EVV+ L+ ++ K +TA +++ NED+
Sbjct: 93 VNAKDMLK---MTALHWATEHNHQEVVELLIKYGADVHTQS-KFCKTAFDISIDNGNEDL 148
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
T LH AA H+++V LL+ +++ I G+T LH A GHLE+V+ L+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 290 FRTDKKGQTALHMAVKGQNEDI 311
+ DK G+TA +++ NED+
Sbjct: 108 AQ-DKFGKTAFDISIDNGNEDL 128
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ +++ G TPL++AA + H IVE +L++ +
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNAEDKVGLTPLHLAAMNDHLEIVEVLLKN-GADV 73
Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
+I A G H+ A GHLE+++ LL + V D TA + G+ D+
Sbjct: 74 NAIDAI-GETPLHLVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 247 LLEID 251
L +++
Sbjct: 132 LQKLN 136
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ +N A + + G T LH AA HLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
D G+T LH+ + +IV L++ V +D G TA I+I G
Sbjct: 74 NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNG 124
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
K G LHLAA +L V +L++ A D + GETPL++ A GH IVE
Sbjct: 45 KVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI------GETPLHLVAMYGHLEIVEV 98
Query: 178 MLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
+L+H A + A++ G +F ++ G+ E L E+L
Sbjct: 99 LLKH----GADVNAQDKFGKTAFDISIDNGN-EDLAEIL 132
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 279
M +DL L AA G D V L+ +N A +A NG T LH AAR GHLEVVK
Sbjct: 2 MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 56
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
L+ + DK G+TA +++ NED+
Sbjct: 57 LLLEAGADVNAQ-DKFGKTAFDISIDNGNEDL 87
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ K++ G TPL++AA +GH +V+ +L+
Sbjct: 13 AARAGQDDEV-RILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLE----AG 62
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 63 ADVNAQDKFGKTAFDISIDNGN-EDLAEIL 91
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ + DK G T LH+A + + ++V L+
Sbjct: 7 GKKLL-EAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 322 VLKLEDNKGNTALHIAIKKG 341
V +D G TA I+I G
Sbjct: 65 V-NAQDKFGKTAFDISIDNG 83
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
+NG H+AA+ GHLEV+K LL E V D TA + G+ D+ L
Sbjct: 37 KNGSTPLHLAARNGHLEVVKLLL-EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
AA+ G + ++ L+ + V D + ST LH AA GH++VV LLE
Sbjct: 13 AARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 279
M +DL L AA G D V L+ +N A +A NG T LH AAR GHLEVVK
Sbjct: 20 MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
L+ + DK G+TA +++ NED+
Sbjct: 75 LLLEAGADVXAQ-DKFGKTAFDISIDNGNEDL 105
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ K++ G TPL++AA +GH +V+ +L+
Sbjct: 31 AARAGQDDEV-RILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLE----AG 80
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGN-EDLAEIL 109
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
+NG H+AA+ GHLEV+K LL E V D TA + G+ D+ L
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
GK +L AAR G + V+ L++ + DK G T LH+A + + ++V L+
Sbjct: 25 GKKLLE-AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 322 VLKLEDNKGNTALHIAIKKG 341
V +D G TA I+I G
Sbjct: 83 VXA-QDKFGKTAFDISIDNG 101
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 254
AA+ G + ++ L+ + V D + ST LH AA GH++VV LLE +++
Sbjct: 31 AARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
T L+ A A GH+++V LL+ +++ + G T LH AA +GHLE+ + L+
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Query: 290 FRTDKKGQTALHMAVKGQNEDI 311
+ DK G+TA +++ NED+
Sbjct: 108 AQ-DKFGKTAFDISIGNGNEDL 128
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ K++ G TPLY+A GH IVE +L++
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
A + A + G+ H+AA GHLE+ + LL + V D TA + G+ D+
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLA 129
Query: 245 NFLLEID 251
L +++
Sbjct: 130 EILQKLN 136
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
L AA G D V L+ +N A + + G T L+ A GHLE+V+ L+ K+ +
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
D G T LH+A + +I L++ V +D G TA I+I G
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNG 124
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 204 QGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGK 263
+G ++++ ++ E + + D TALH A GH ++V FL++ N+ A ++G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGI-TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGW 104
Query: 264 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
T LH AA +++V K LV + T QTA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
++ S+P G + H A GH E++K L +F V D T LH AA+ ++ V
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 244 VNFLLE 249
FL+E
Sbjct: 119 CKFLVE 124
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLE 208
D S N EG T L+ A +GH IV+ ++Q +N+ A +G+ H AA +++
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD---SDGWTPLHCAASCNNVQ 117
Query: 209 VLKELL 214
V K L+
Sbjct: 118 VCKFLV 123
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 204 QGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGK 263
+G ++++ ++ E + + D TALH A GH ++V FL++ N+ A ++G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGI-TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGW 104
Query: 264 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
T LH AA +++V K LV + T QTA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
++ S+P G + H A GH E++K L +F V D T LH AA+ ++ V
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 244 VNFLLE 249
FL+E
Sbjct: 119 CKFLVE 124
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLE 208
D S N EG T L+ A +GH IV+ ++Q +N+ A +G+ H AA +++
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD---SDGWTPLHCAASCNNVQ 117
Query: 209 VLKELL 214
V K L+
Sbjct: 118 VCKFLV 123
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 175 VEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234
V+E+LQ + + G ++A +E+ K L+ ++ + +S S L+
Sbjct: 21 VKEILQDTTYQVDEVDTE-GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY- 78
Query: 235 AAAQGHIDVVNFLLE-IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD-PSTGFRT 292
A AQG +++ ++L+ +L K R G ++ AA GH++ VK L+ F+
Sbjct: 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALI-PAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 293 DKKGQTALHMAV---KGQN--EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
D G TAL AV +G +DIV +L+ + + ++DN G TA+ A +KG T+
Sbjct: 138 DF-GYTALIEAVGLREGNQLYQDIV-KLLMENGADQSIKDNSGRTAMDYANQKGYTE 192
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 312
A+ AR N +L AA G LEVV+ V + DPS + +++G TALH A+ G N IV
Sbjct: 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIV 70
Query: 313 LELIRPDPSVLKLEDNKGNTALHIA 337
LI +V D+ G T LH A
Sbjct: 71 DFLITAGANV-NSPDSHGWTPLHCA 94
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
AA G LEV+++ + E N + TALH A + +V+FL+ +N+ +
Sbjct: 28 AALTGELEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDS 85
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
+G T LH AA + ALV + T G TA
Sbjct: 86 HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAF 125
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
D LH AA+ GNLS + E L + + ++ ++ G T LY A GH IVE +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDN------RVGVNGLDKAGSTALYWACHGGHKDIVEXLFT 127
Query: 181 HMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
N+E + +N G + H AA +G+ ++++ LL
Sbjct: 128 QPNIE---LNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRT-DKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 324
LH AA+ G+L ++ + D G DK G TAL+ A G ++DIV E + P++
Sbjct: 77 LHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIV-EXLFTQPNIEL 133
Query: 325 LEDNK-GNTALHIAIKKG 341
+ NK G+TALH A KG
Sbjct: 134 NQQNKLGDTALHAAAWKG 151
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
N V S LH AA +G++ + L+ + + + G T L+ A GH ++V
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIV 122
Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
+ L ++ + +K G TALH A DIV
Sbjct: 123 EXLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
E +++++ ++EG TPL AA G +VE +LQ NG D
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------NGAD---------- 77
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+LLG+ +AL A ++G+ D+V LL+ ++ + N G +L
Sbjct: 78 ----PQLLGK----------GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 123
Query: 267 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+ A H++ VK L+ TD G ++ +AV
Sbjct: 124 Y-AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 159
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
E +++++ ++EG TPL AA G +VE +LQ NG D
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------NGAD---------- 61
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+LLG+ +AL A ++G+ D+V LL+ ++ + N G +L
Sbjct: 62 ----PQLLGK----------GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107
Query: 267 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+ A H++ VK L+ TD G ++ +AV
Sbjct: 108 Y-AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 143
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
E +++++ ++EG TPL AA G +VE +LQ NG D
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------NGAD---------- 59
Query: 207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
+LLG+ +AL A ++G+ D+V LL+ ++ + N G +L
Sbjct: 60 ----PQLLGK----------GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 105
Query: 267 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304
+ A H++ VK L+ TD G ++ +AV
Sbjct: 106 Y-AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 141
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 202 AKQGHLEVLKELL-GEFPNLVMTTDLSCS------TALHTAAAQGHIDVVNFLLEIDSNL 254
A +G +E L E G P+ V ++ ++ T TAA + ++ LLE D ++
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV 70
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 314
+ NG+T L A +G + V+ L R + G TALHMA ++V
Sbjct: 71 DAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 315 LIRPDPSVLKLEDNKGNTALHIA 337
L+ + ++ED +G TAL +A
Sbjct: 130 LVELGADI-EVEDERGLTALELA 151
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
L AA G D V L+ +++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 292 TDKKGQTALHMAVKGQNEDI 311
DK G+TA +++ NED+
Sbjct: 65 -DKFGKTAFDISIDNGNEDL 83
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K+++G TPL++AA GH IVE +L+
Sbjct: 9 AARAGQDDEVRILM----ANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 58
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELL 214
A + A++ G +F ++ G+ E L E+L
Sbjct: 59 ADVNAQDKFGKTAFDISIDNGN-EDLAEIL 87
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 193 NGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
+G+ H A ++G V++ L+ G N++ D T LH AA+ GH D+V LL+
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD---DTPLHLAASHGHRDIVQKLLQY 89
Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
+++ + +G LH A G +V + LV+
Sbjct: 90 KADINAV-NEHGNVPLHYACFWGQDQVAEDLVA 121
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LH A R G S V+E+L A ++ N+ +TPL++AA GH IV+++LQ+
Sbjct: 38 LHWACREGR-SAVVEMLIMRGAR-----INVMNRGDDTPLHLAASHGHRDIVQKLLQY-- 89
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLG 215
A I A N G H A G +V ++L+
Sbjct: 90 --KADINAVNEHGNVPLHYACFWGQDQVAEDLVA 121
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLK 211
L++ + G +PL+ A G + +VE ++ M ++ R H+AA GH ++++
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLI--MRGARINVMNRGDDTPLHLAASHGHRDIVQ 84
Query: 212 ELL 214
+LL
Sbjct: 85 KLL 87
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 193 NGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
+G+ H A ++G V++ L+ G N++ D T LH AA+ GH D+V LL+
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD---DTPLHLAASHGHRDIVQKLLQY 94
Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
+++ + +G LH A G +V + LV+
Sbjct: 95 KADINAV-NEHGNVPLHYACFWGQDQVAEDLVA 126
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LH A R G S V+E+L A ++ N+ +TPL++AA GH IV+++LQ+
Sbjct: 43 LHWACREGR-SAVVEMLIMRGAR-----INVMNRGDDTPLHLAASHGHRDIVQKLLQY-- 94
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLG 215
A I A N G H A G +V ++L+
Sbjct: 95 --KADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLK 211
L++ + G +PL+ A G + +VE ++ M ++ R H+AA GH ++++
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLI--MRGARINVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 212 ELL 214
+LL
Sbjct: 90 KLL 92
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 286
TALH A H ++FLL + + N G+T LH AA +G V+ L +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
++ G TALH+A + + L++P PS
Sbjct: 70 GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPS 103
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 286
TALH A H ++FLL + + N G+T LH AA +G V+ L +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
++ G TALH+A + + L++P PS
Sbjct: 70 GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPS 103
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 165 VAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPN-LVMT 223
+AAE+GH ++ + + E + Y +F +AA+ GHL VL L P
Sbjct: 134 LAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAX 193
Query: 224 TDLSCSTALHTAA-AQGHIDVVNFLLEIDSNLA 255
A AA +GH +V+NFLL+ LA
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVXLA 226
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + +TALH AAA D LLE ++ A I N G+T LH+
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 96
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 155
Query: 329 KGNTALH 335
G +ALH
Sbjct: 156 LGKSALH 162
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
G T LH AA + K L+ + D G+T LH AV + + LIR +
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 322 VLKLEDNKGNTALHIAIK 339
L + G T L +A +
Sbjct: 116 DLDARMHDGTTPLILAAR 133
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 202 AKQGHLEVLKELL-GEFPNLVMTTDLSC------STALHTAAAQGHIDVVNFLLEIDSNL 254
A +G +E L E G P+ V ++ ++ T TAA + ++ LLE D ++
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV 69
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 314
+ N G+T L A +G + V+ L R + G TALHMA ++V
Sbjct: 70 DAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 315 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAG 347
L+ + ++ED +G TAL +A + +T G
Sbjct: 129 LVELGADI-EVEDERGLTALELAREILKTTPKG 160
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 216 EFPNL-VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 274
+FP L + +D +H AA +G D V L+E + I G T LH A + G
Sbjct: 7 DFPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGC 65
Query: 275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
++ K L S GQ +H+AV D+V+ L+
Sbjct: 66 VDTAKYLASVGEVHSLW---HGQKPIHLAVXANKTDLVVALV 104
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK----KGQTALHMAVKGQNEDIVLELIR 317
G+T LH AA +LE L+ P F +GQTALH+AV QN ++V L+
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 318 PDPSV 322
SV
Sbjct: 97 RGASV 101
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR 259
+AAK+ ++ L +LL V TALH AA +++ L+E L
Sbjct: 9 LAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM 68
Query: 260 NN----GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK------------GQTALHMA 303
+ G+T LH A ++ +V+AL+++ S R G+ L A
Sbjct: 69 TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA 128
Query: 304 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
+E+IV LI + + +D+ GNT LHI I
Sbjct: 129 ACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILI 162
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 18/172 (10%)
Query: 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPN 219
E+PL +AA+ + ++L+ E A G + H+AA +LE L+ P
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEAAPE 62
Query: 220 LV---MTTDL-SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN------------GK 263
LV MT++L TALH A ++++V LL ++++ A + G+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 264 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315
L AA +G E+V+ L+ + D G T LH+ + N+ ++
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQ-DSLGNTVLHILILQPNKTFACQM 173
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS--KDPS 287
T LH AA + H DV+ L + + + + + G+T LH AA GHL+ + L+S DPS
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 288 T----GFRTDKKGQTAL 300
GF + G A+
Sbjct: 308 IISLQGFTAAQMGNEAV 324
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 46/255 (18%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
R LHLAA N R++++L A+ + K++ G PL+ A GH + E +
Sbjct: 57 RKSTPLHLAA-GYNRVRIVQLLLQHGAD-----VHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 179 LQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL--GEFPNLV-----MTTDLSCS 229
L+H A + A + + H AA + +EV LL G P LV D++ +
Sbjct: 111 LKH----GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT 166
Query: 230 TALH---TAAAQGHIDVVNFLLEI--DSNLAKIARN------------NGKTVLHSAARM 272
L T +GH LL+ +++LAK+ + + +T LH A
Sbjct: 167 PELRERLTYEFKGH-----SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS 221
Query: 273 GHL---EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 329
H +V + L+ K + + +K T LH+A + + D V+E++ + + D+
Sbjct: 222 LHPKRKQVAELLLRKGANVNEK-NKDFMTPLHVAAERAHND-VMEVLHKHGAKMNALDSL 279
Query: 330 GNTALHIAIKKGRTQ 344
G TALH A G Q
Sbjct: 280 GQTALHRAALAGHLQ 294
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 13/91 (14%)
Query: 135 RVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN- 193
+V E+L AN +++KN++ TPL+VAAE H ++E + +H A + A +
Sbjct: 228 QVAELLLRKGAN-----VNEKNKDFMTPLHVAAERAHNDVMEVLHKH----GAKMNALDS 278
Query: 194 -GYDSFHVAAKQGHLEVLKELL--GEFPNLV 221
G + H AA GHL+ + LL G P+++
Sbjct: 279 LGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 97
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 156
Query: 329 KGNTALH 335
G +ALH
Sbjct: 157 LGKSALH 163
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 97
Query: 337 AI 338
A+
Sbjct: 98 AV 99
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
G+T LH AAR + K L+ + D G+T LH AV + + LIR +
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRAT 116
Query: 322 VLKLEDNKGNTALHIAIK 339
L + G T L +A +
Sbjct: 117 DLDARMHDGTTPLILAAR 134
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
+ G+ LHLAAR +L+ S DAN ++ G TPL+ A + + +
Sbjct: 56 RTGETALHLAARYSRSDAAKRLLEASADAN-------IQDNMGRTPLHAAVSADAQGVFQ 108
Query: 177 EMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234
++++ + AR +G +AA+ +L++L+ ++ DL S ALH
Sbjct: 109 ILIRN---RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS-ALHW 164
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
AAA ++D LL+ +N + N +T L AAR G E K L+
Sbjct: 165 AAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD 212
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 64
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 123
Query: 329 KGNTALH 335
G +ALH
Sbjct: 124 LGKSALH 130
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 64
Query: 337 AI 338
A+
Sbjct: 65 AV 66
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
G+T LH AAR + K L+ + D G+T LH AV + + LIR +
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 322 VLKLEDNKGNTALHIAIK 339
L + G T L +A +
Sbjct: 84 DLDARMHDGTTPLILAAR 101
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Query: 102 SFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGE 160
FI G N+ + G+ LHLAAR +L+ S DAN ++ G
Sbjct: 9 DFIYQGASLHNQ--TDRTGETALHLAARYSRSDAAKRLLEASADAN-------IQDNMGR 59
Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFP 218
TPL+ A + + + ++++ + AR +G +AA+ +L++L+
Sbjct: 60 TPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
++ DL S ALH AAA ++D LL+ +N + N +T L AAR G E
Sbjct: 117 DVNAVDDLGKS-ALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETA 174
Query: 279 KALVS 283
K L+
Sbjct: 175 KVLLD 179
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 96
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 155
Query: 329 KGNTALH 335
G +ALH
Sbjct: 156 LGKSALH 162
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 96
Query: 337 AI 338
A+
Sbjct: 97 AV 98
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
G+T LH AAR + K L+ + D G+T LH AV + + LIR +
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 322 VLKLEDNKGNTALHIAIK 339
L + G T L +A +
Sbjct: 116 DLDARMHDGTTPLILAAR 133
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
+ G+ LHLAAR +L+ S DAN ++ G TPL+ A + + +
Sbjct: 55 RTGETALHLAARYSRSDAAKRLLEASADAN-------IQDNMGRTPLHAAVSADAQGVFQ 107
Query: 177 EMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234
++++ + AR +G +AA+ +L++L+ ++ DL S ALH
Sbjct: 108 ILIRN---RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS-ALHW 163
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
AAA ++D LL+ +N + N +T L AAR G E K L+
Sbjct: 164 AAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD 211
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHA 61
Query: 337 AI 338
A+
Sbjct: 62 AV 63
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHA 61
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD- 120
Query: 329 KGNTALH 335
G +ALH
Sbjct: 121 LGKSALH 127
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
G+T LH AAR + K L+ + D G+T LH AV + + L+R +
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Query: 322 VLKLEDNKGNTALHIAIK 339
L + G T L +A +
Sbjct: 81 DLDARMHDGTTPLILAAR 98
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
G+T LH AA++ + +VK LV + S + D+ G+T + +A + ++V LI+ S
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 322 V 322
V
Sbjct: 339 V 339
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 230 TALHTAAAQGHIDVVNFLL---EIDSNLAKIARNNGKTVL----HSAARMGHLEVVKALV 282
+ALH AAA + L ++ ++ ++ RN G T L H+ R + K LV
Sbjct: 201 SALHQAAANRDFGXXVYXLNSTKLKGDIEELDRN-GXTALXIVAHNEGR-DQVASAKLLV 258
Query: 283 SK----DPSTGFRTDK---KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 335
K D R D KG+TALH A + N IV L+ S +D G T +
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIX 318
Query: 336 IAIKKGRTQ 344
+A ++GR +
Sbjct: 319 LAAQEGRIE 327
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHA 172
KDS +G LH AA+ N V ++ +N+ K++++G+TP+ +AA+ G
Sbjct: 272 KDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNK-----DKQDEDGKTPIXLAAQEGRI 326
Query: 173 LIVEEMLQ 180
+V ++Q
Sbjct: 327 EVVXYLIQ 334
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 230 TALHTAAAQGHIDVVNFLL-EIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 288
TALH AA + +V +L+ E SN K +GKT + AA+ G +EVV L+ + S
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDK-QDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
Query: 289 GFRTDKKGQTALHMAVKGQNEDIV--LELIRPD 319
D TA +A + +IV + RP+
Sbjct: 340 EA-VDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
G + H AA+ + ++K L+GE + D T + AA +G I+VV +L++
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 161 TPLYVAAESGHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF 217
+PL+ A GH V+ +L+H +N TA + + A G + + LL
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTA-----DWHTPLFNACVSGSWDCVNLLLQHG 148
Query: 218 PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV 277
++ +DL+ + +H AA +GH++ VN L+ N+ + G T L+ A
Sbjct: 149 ASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRAC 205
Query: 278 VKALVSKDPSTGFRTDKKGQ-TALHMAVKGQNEDIVLELI 316
VK L+ S KGQ + LH V+ +E++ L+
Sbjct: 206 VKKLLE---SGADVNQGKGQDSPLHAVVRTASEELACLLM 242
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 17/197 (8%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPA--------------RNGYDSFHVAAKQ 204
G TPL +AA G L E +++ TA + + + G S H+AA+
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
+ K LL + + D + T LH A A + V LL + ++G T
Sbjct: 62 ARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT 120
Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 324
L AAR+ +V+ L++ D D G+TALH A N + V L+ +
Sbjct: 121 PLILAARLAIEGMVEDLITADADINA-ADNSGKTALHWAAAVNNTEAVNILLMHHANR-D 178
Query: 325 LEDNKGNTALHIAIKKG 341
+D+K T L +A ++G
Sbjct: 179 AQDDKDETPLFLAAREG 195
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
K G+ LHLAAR +L + DAN ++ G TPL+ AA + A+ V
Sbjct: 49 KTGETSLHLAARFARADAAKRLLDAGADAN-------SQDNTGRTPLH-AAVAADAMGVF 100
Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236
++L + +G +AA+ ++++L+ + + D S TALH AA
Sbjct: 101 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAA 159
Query: 237 AQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKALVSK 284
A + + VN LL +N + A+++ +T L AAR G E KAL+
Sbjct: 160 AVNNTEAVNILLMHHAN--RDAQDDKDETPLFLAAREGSYEASKALLDN 206
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 144 DANEAKDLLSKK-------NQEGETPLYVAAESGHALIVEEMLQHM--NLETASIPARNG 194
D E + LL ++ N+ G+T L V A+ +E + Q N++ AS G
Sbjct: 22 DVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDAS-----G 76
Query: 195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
H AA+ G L+ LK L+ E V D + S +H A +GH VV+FL
Sbjct: 77 TSPVHDAARTGFLDTLKVLV-EHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 144 DANEAKDLLSKK-------NQEGETPLYVAAESGHALIVEEMLQHM--NLETASIPARNG 194
D E + LL ++ N+ G+T L V A+ +E + Q N++ AS G
Sbjct: 20 DVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDAS-----G 74
Query: 195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 247
H AA+ G L+ LK L+ E V D + S +H A +GH VV+FL
Sbjct: 75 TSPVHDAARTGFLDTLKVLV-EHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 161 TPLYVAAESGHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF 217
+PL+ A GH V+ +L+H +N TA + + A G + + LL
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTA-----DWHTPLFNACVSGSWDCVNLLLQHG 92
Query: 218 PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV 277
++ +DL+ + +H AA +GH++ VN L+ N+ + G T L+ A
Sbjct: 93 ASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRAC 149
Query: 278 VKALVSKDPSTGFRTDKKGQ-TALHMAVKGQNEDIVLELI 316
VK L+ S KGQ + LH + +E++ L+
Sbjct: 150 VKKLLE---SGADVNQGKGQDSPLHAVARTASEELACLLM 186
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193
++ +N EGETPL VA++ G + IV+++L+ A I AR+
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLEL----GADISARD 164
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKE 212
S+ + +G T LY A +SG+ V+ ++ N SF+ A + ++
Sbjct: 89 SQFDDKGNTALYYAVDSGNXQTVKLFVKK-NWRLXFYGKTGWKTSFYHAVXLNDVSIVSY 147
Query: 213 LLGEFPNLV-MTTDLSCSTALHTAAAQGHIDVVNFLLE 249
L E P+ + LSC +H GH+D LL+
Sbjct: 148 FLSEIPSTFDLAILLSC---IHITIKNGHVDXXILLLD 182
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI 257
F A K G L+ +K+ + + ++ T + LH AA G ++++ FLL +++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 258 ARNNGKTVLHSAARMGHLEVVKALVSK 284
+++ T L SA GH+ VK L+SK
Sbjct: 70 DKHH-ITPLLSAVYEGHVSCVKLLLSK 95
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI 257
F A K G L+ +K+ + + ++ T + LH AA G ++++ FLL +++
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAP 64
Query: 258 ARNNGKTVLHSAARMGHLEVVKALVSK 284
+++ T L SA GH+ VK L+SK
Sbjct: 65 DKHH-ITPLLSAVYEGHVSCVKLLLSK 90
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVS--KDPSTGFRTDKKG 296
+N+ +NG T L+ AAR+G++ +V AL+ DP F +K G
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP---FIANKSG 316
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 28/197 (14%)
Query: 120 GDLQLHLAARAGNLS---RVMEILQSCDANEAKDLLSKKNQEGETPLYVAA----ESGHA 172
GD LH+A GNL R++ + Q + L N +TPL++A S
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQ-----QGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 173 LIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF-PNLVMTTDLSCS-- 229
L+V M L+ R+G + H+A + L+ LL P T DL
Sbjct: 64 LLVTAGASPMALD------RHGQTAAHLACEHRSPTCLRALLDSAAPG---TLDLEARNY 114
Query: 230 ---TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDP 286
TALH A + V LLE +++ + +G++ L A L +V+ L+
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 287 STGFRTDKKGQTALHMA 303
+ + G +ALH A
Sbjct: 175 NVNAQM-YSGSSALHSA 190
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 284 KDPSTGFRTDKKGQTALHMAVKGQNEDI--VLELIRPDPSVLKLED-------NKGNTAL 334
KDP TG K LH GQN+ I +L++ R S+ + + KG TAL
Sbjct: 49 KDPETGKTCLLKAXLNLH---NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105
Query: 335 HIAIKK 340
HIAI++
Sbjct: 106 HIAIER 111
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK------------GQTALHMAVKGQNE 309
G + LH A L+ VK LV R + G+ L +A +
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 310 DIVLELIRP--DPSVLKLEDNKGNTALHIAI 338
D+V L+ P+ L+ D+ GNT LH +
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,447,547
Number of Sequences: 62578
Number of extensions: 538170
Number of successful extensions: 2257
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 439
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)