Query 007778
Match_columns 590
No_of_seqs 629 out of 3163
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-39 5.9E-44 322.4 21.3 231 112-352 2-245 (253)
2 3b7b_A Euchromatic histone-lys 100.0 5E-38 1.7E-42 307.8 24.7 222 112-344 3-224 (237)
3 1oy3_D Transcription factor in 100.0 5.9E-38 2E-42 315.0 23.1 222 113-342 2-270 (282)
4 1k1a_A B-cell lymphoma 3-encod 100.0 5.4E-38 1.8E-42 308.0 19.5 230 114-350 3-236 (241)
5 3aji_A 26S proteasome non-ATPa 100.0 5.6E-37 1.9E-41 299.1 22.7 222 117-349 3-224 (231)
6 2xai_A ASB-9, ankyrin repeat a 100.0 3.3E-37 1.1E-41 307.5 20.9 210 119-342 2-211 (261)
7 2dzn_A Probable 26S proteasome 100.0 5.8E-37 2E-41 298.2 20.8 212 120-340 2-218 (228)
8 3d9h_A CDNA FLJ77766, highly s 100.0 9.3E-37 3.2E-41 308.5 22.3 223 112-350 51-273 (285)
9 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-36 4.2E-41 326.0 24.5 222 117-350 143-364 (437)
10 1wdy_A 2-5A-dependent ribonucl 100.0 5.3E-36 1.8E-40 300.5 27.1 231 111-352 29-275 (285)
11 3ljn_A Hypothetical protein; a 100.0 4.1E-37 1.4E-41 321.7 19.3 228 110-351 10-265 (364)
12 1n11_A Ankyrin; clathrin, BAND 100.0 1.3E-35 4.6E-40 317.8 27.4 258 70-352 10-267 (437)
13 4b93_B Ankyrin repeat domain-c 100.0 4.9E-37 1.7E-41 307.9 13.9 222 115-342 6-230 (269)
14 3utm_A Tankyrase-1; tankyrase, 100.0 4.6E-35 1.6E-39 303.0 26.3 229 109-349 47-299 (351)
15 2fo1_E LIN-12 protein; beta-ba 100.0 4.3E-36 1.5E-40 315.5 18.2 231 111-352 115-368 (373)
16 3utm_A Tankyrase-1; tankyrase, 100.0 2.1E-35 7.2E-40 305.5 21.2 226 116-352 20-269 (351)
17 3d9h_A CDNA FLJ77766, highly s 100.0 1E-35 3.6E-40 300.8 16.9 242 117-368 12-258 (285)
18 3eu9_A Huntingtin-interacting 100.0 6.6E-35 2.3E-39 285.1 22.0 228 114-351 3-231 (240)
19 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-34 5.3E-39 289.8 24.6 221 119-351 4-240 (285)
20 2f8y_A Notch homolog 1, transl 100.0 7.8E-35 2.7E-39 282.3 19.0 195 117-321 22-216 (223)
21 2xai_A ASB-9, ankyrin repeat a 100.0 8.9E-35 3E-39 289.9 18.6 241 76-344 5-252 (261)
22 1s70_B 130 kDa myosin-binding 100.0 6.6E-35 2.3E-39 295.9 17.4 214 115-339 35-274 (299)
23 1ikn_D Protein (I-kappa-B-alph 100.0 9.7E-36 3.3E-40 291.8 9.2 221 114-340 2-229 (236)
24 3ljn_A Hypothetical protein; a 100.0 2.7E-35 9.1E-40 307.9 11.6 254 70-347 16-306 (364)
25 2f8y_A Notch homolog 1, transl 100.0 2.8E-33 9.6E-38 271.3 24.7 217 130-356 1-217 (223)
26 1oy3_D Transcription factor in 100.0 3.2E-34 1.1E-38 287.7 18.7 216 152-371 2-264 (282)
27 1yyh_A HN1;, notch 1, ankyrin 100.0 1.2E-33 4.1E-38 280.3 22.3 197 114-320 51-247 (253)
28 4g8k_A 2-5A-dependent ribonucl 100.0 4.5E-33 1.5E-37 287.9 26.6 232 109-350 47-293 (337)
29 2rfa_A Transient receptor pote 100.0 3.4E-33 1.1E-37 272.7 20.6 196 119-322 2-223 (232)
30 1k1a_A B-cell lymphoma 3-encod 100.0 2.3E-33 7.8E-38 274.9 18.7 232 72-320 7-240 (241)
31 3kea_A K1L; tropism, ANK repea 100.0 8.3E-34 2.9E-38 286.8 16.0 216 112-350 23-241 (285)
32 3hra_A Ankyrin repeat family p 100.0 1.1E-32 3.7E-37 262.7 22.2 194 117-319 2-201 (201)
33 3aji_A 26S proteasome non-ATPa 100.0 4.2E-33 1.4E-37 271.6 19.7 199 112-321 32-230 (231)
34 2fo1_E LIN-12 protein; beta-ba 100.0 7.7E-33 2.6E-37 290.7 23.0 251 58-321 108-371 (373)
35 3b7b_A Euchromatic histone-lys 100.0 2.1E-32 7.2E-37 267.7 23.0 226 69-317 6-231 (237)
36 2rfa_A Transient receptor pote 100.0 1.8E-32 6.1E-37 267.5 20.5 192 158-352 2-219 (232)
37 4g8k_A 2-5A-dependent ribonucl 100.0 1.3E-31 4.3E-36 277.0 26.1 273 52-352 34-323 (337)
38 4b93_B Ankyrin repeat domain-c 100.0 2.3E-33 7.9E-38 281.2 12.1 192 111-315 43-235 (269)
39 3kea_A K1L; tropism, ANK repea 100.0 1.5E-32 5.3E-37 277.5 17.3 209 128-352 7-217 (285)
40 2pnn_A Transient receptor pote 100.0 2.5E-33 8.5E-38 281.0 11.0 221 112-334 5-271 (273)
41 2dzn_A Probable 26S proteasome 100.0 1.5E-31 5.1E-36 259.9 21.9 189 159-350 2-194 (228)
42 3eu9_A Huntingtin-interacting 100.0 4.1E-31 1.4E-35 258.1 23.6 225 74-321 9-235 (240)
43 1ikn_D Protein (I-kappa-B-alph 100.0 7.7E-33 2.6E-37 271.1 10.6 196 154-352 3-206 (236)
44 2etb_A Transient receptor pote 100.0 3.3E-32 1.1E-36 270.0 14.4 193 119-321 1-246 (256)
45 3hra_A Ankyrin repeat family p 100.0 3.8E-31 1.3E-35 252.0 20.8 191 156-350 2-198 (201)
46 1sw6_A Regulatory protein SWI6 100.0 3.4E-32 1.2E-36 280.5 9.9 199 124-341 101-327 (327)
47 4gpm_A Engineered protein OR26 100.0 1.5E-30 5E-35 242.0 19.0 157 161-322 6-162 (169)
48 3jxi_A Vanilloid receptor-rela 100.0 1.4E-31 4.7E-36 266.0 11.2 202 117-322 2-251 (260)
49 4gpm_A Engineered protein OR26 100.0 2.7E-30 9.1E-35 240.2 19.0 159 122-290 6-164 (169)
50 1s70_B 130 kDa myosin-binding 100.0 6.9E-31 2.3E-35 266.2 15.8 236 126-368 4-268 (299)
51 2etb_A Transient receptor pote 100.0 3.7E-31 1.3E-35 262.5 13.1 189 158-350 1-241 (256)
52 2pnn_A Transient receptor pote 100.0 2.1E-31 7.1E-36 267.0 9.8 201 152-354 6-257 (273)
53 4hbd_A KN motif and ankyrin re 100.0 7.5E-30 2.6E-34 256.6 14.4 192 120-319 76-273 (276)
54 3jxi_A Vanilloid receptor-rela 100.0 3.2E-30 1.1E-34 256.2 10.4 192 156-351 2-246 (260)
55 2rfm_A Putative ankyrin repeat 100.0 6.1E-29 2.1E-33 235.4 16.4 165 150-319 26-190 (192)
56 3v30_A DNA-binding protein rfx 100.0 6.1E-29 2.1E-33 231.0 15.4 169 160-333 3-171 (172)
57 3v30_A DNA-binding protein rfx 100.0 1.3E-28 4.3E-33 228.9 15.9 170 120-299 2-171 (172)
58 4hbd_A KN motif and ankyrin re 100.0 2.2E-29 7.4E-34 253.2 11.3 190 159-351 76-271 (276)
59 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.7E-28 5.8E-33 225.4 15.6 159 158-321 4-162 (162)
60 3v31_A Ankyrin repeat family A 100.0 2.6E-28 8.9E-33 225.6 15.4 160 158-322 2-161 (167)
61 2rfm_A Putative ankyrin repeat 100.0 3.2E-28 1.1E-32 230.5 16.4 163 113-285 28-190 (192)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.4E-28 1.2E-32 223.4 15.5 159 119-287 4-162 (162)
63 1sw6_A Regulatory protein SWI6 100.0 7.8E-29 2.7E-33 255.4 12.0 182 108-307 118-327 (327)
64 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.2E-27 4.1E-32 221.9 18.0 160 155-319 10-169 (169)
65 2vge_A RELA-associated inhibit 100.0 9.9E-31 3.4E-35 255.6 -3.0 204 137-350 2-208 (229)
66 3v31_A Ankyrin repeat family A 100.0 6.3E-28 2.1E-32 223.0 16.0 161 119-289 2-162 (167)
67 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.1E-27 7.2E-32 220.2 17.9 161 115-285 9-169 (169)
68 3twr_A Tankyrase-2; ankyrin re 99.9 8.2E-28 2.8E-32 221.8 13.6 160 156-320 5-164 (165)
69 3f6q_A Integrin-linked protein 99.9 1.8E-27 6.2E-32 222.8 15.0 168 157-329 3-170 (179)
70 1awc_B Protein (GA binding pro 99.9 4.5E-27 1.6E-31 214.2 17.2 150 160-315 3-152 (153)
71 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.2E-27 1.1E-31 215.6 16.1 154 159-318 2-155 (156)
72 3twr_A Tankyrase-2; ankyrin re 99.9 1.7E-27 5.9E-32 219.6 12.8 161 116-286 4-164 (165)
73 2vge_A RELA-associated inhibit 99.9 5.8E-30 2E-34 250.2 -4.3 200 109-320 10-213 (229)
74 1awc_B Protein (GA binding pro 99.9 1.6E-26 5.4E-31 210.5 17.4 151 120-281 2-152 (153)
75 3f6q_A Integrin-linked protein 99.9 5.9E-27 2E-31 219.3 14.6 165 118-291 3-167 (179)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.6E-26 5.4E-31 210.9 16.1 154 120-284 2-155 (156)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.2E-28 2.1E-32 237.2 5.2 180 156-342 2-193 (239)
78 2aja_A Ankyrin repeat family p 99.9 1.1E-28 3.7E-33 258.2 -2.2 218 117-351 89-340 (376)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5.5E-27 1.9E-31 230.4 6.2 208 117-337 2-225 (239)
80 2aja_A Ankyrin repeat family p 99.9 8.7E-27 3E-31 243.8 2.8 198 120-344 65-268 (376)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 6.6E-25 2.3E-29 200.6 10.3 144 189-337 7-151 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 1.3E-24 4.3E-29 194.0 10.5 131 186-320 4-135 (136)
83 3t8k_A Uncharacterized protein 99.9 3.8E-25 1.3E-29 208.8 6.0 154 159-319 6-177 (186)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 1.8E-24 6.1E-29 197.7 10.1 146 152-303 5-151 (156)
85 1d9s_A Cyclin-dependent kinase 99.9 3.2E-24 1.1E-28 191.3 10.4 131 152-287 5-136 (136)
86 3t8k_A Uncharacterized protein 99.9 3.4E-24 1.2E-28 202.2 7.6 157 120-288 6-180 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.8E-23 2.7E-27 178.6 14.1 124 194-320 2-125 (126)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-22 4.1E-27 177.4 14.9 126 158-287 1-126 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 4.3E-23 1.5E-27 184.0 12.1 125 192-319 12-136 (136)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 1E-22 3.4E-27 181.6 12.5 127 155-285 10-136 (136)
91 2b0o_E UPLC1; arfgap, structur 99.9 2.3E-22 8E-27 204.4 12.9 142 193-343 150-299 (301)
92 3c5r_A BARD-1, BRCA1-associate 99.9 9.5E-23 3.2E-27 181.8 7.8 127 189-318 5-131 (137)
93 3deo_A Signal recognition part 99.9 1.5E-22 5.2E-27 190.1 9.4 141 156-318 41-181 (183)
94 3ui2_A Signal recognition part 99.9 1.8E-22 6.3E-27 198.8 9.2 169 120-319 15-183 (244)
95 3deo_A Signal recognition part 99.9 1.9E-21 6.6E-26 182.5 12.5 140 117-284 41-181 (183)
96 3c5r_A BARD-1, BRCA1-associate 99.9 3.2E-22 1.1E-26 178.3 6.7 129 154-286 5-133 (137)
97 3ui2_A Signal recognition part 99.9 1.8E-21 6E-26 191.7 12.4 142 118-287 43-185 (244)
98 2b0o_E UPLC1; arfgap, structur 99.8 1.2E-21 4E-26 199.2 10.1 140 159-309 151-299 (301)
99 3aaa_C Myotrophin, protein V-1 99.8 1.6E-21 5.6E-26 170.4 8.9 107 194-303 7-113 (123)
100 3ehr_A Osteoclast-stimulating 99.8 8.7E-22 3E-26 190.6 7.6 125 194-321 73-198 (222)
101 3aaa_C Myotrophin, protein V-1 99.8 6.6E-21 2.3E-25 166.5 11.2 111 225-338 4-114 (123)
102 3ehr_A Osteoclast-stimulating 99.8 1.4E-21 4.9E-26 189.1 7.5 135 152-290 66-201 (222)
103 1dcq_A PYK2-associated protein 99.8 1.4E-20 5E-25 188.9 12.5 195 116-322 62-264 (278)
104 1dcq_A PYK2-associated protein 99.8 1.4E-19 4.9E-24 181.6 14.3 192 155-353 62-261 (278)
105 3lvq_E ARF-GAP with SH3 domain 99.8 2E-19 6.8E-24 195.7 14.1 138 194-340 132-277 (497)
106 3jue_A Arfgap with coiled-coil 99.8 1.1E-19 3.7E-24 189.3 11.2 148 190-340 195-347 (368)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.3E-19 1.1E-23 147.6 10.7 91 228-320 2-92 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.8 2.9E-19 1E-23 194.4 13.4 136 159-305 132-276 (497)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.3E-19 1.8E-23 146.3 10.8 91 194-286 2-92 (93)
110 3jue_A Arfgap with coiled-coil 99.8 3.7E-19 1.2E-23 185.3 11.8 147 156-306 196-347 (368)
111 2l6b_A NR1C; ankyrin, consensu 99.8 3.5E-19 1.2E-23 153.5 8.3 109 223-334 4-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.7 3.5E-18 1.2E-22 147.1 10.0 107 155-265 5-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.6E-16 5.5E-21 135.8 9.1 93 221-315 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 1.2E-15 4.1E-20 130.3 9.6 93 152-247 17-109 (110)
115 2l2t_A Receptor tyrosine-prote 69.0 3.4 0.00012 27.8 2.6 29 519-547 6-34 (44)
116 2knc_B Integrin beta-3; transm 65.6 11 0.00037 28.9 5.3 28 520-547 8-35 (79)
117 2ks1_B Epidermal growth factor 57.0 3.2 0.00011 27.9 0.8 28 520-547 8-35 (44)
118 2jwa_A Receptor tyrosine-prote 51.8 18 0.00061 24.3 3.7 12 520-531 9-20 (44)
119 2k9j_B Integrin beta-3; transm 42.4 72 0.0025 21.1 5.8 28 520-547 7-34 (43)
120 3mkq_B Coatomer subunit alpha; 31.6 2.7E+02 0.0093 24.6 11.0 132 120-284 8-140 (177)
121 3gvo_A Pumilio 2, pumilio homo 27.3 60 0.002 32.3 5.0 54 155-208 69-123 (351)
122 2l8s_A Integrin alpha-1; trans 26.5 89 0.003 21.9 4.1 20 521-540 8-27 (54)
123 3gvo_A Pumilio 2, pumilio homo 25.3 94 0.0032 30.7 6.0 222 115-341 68-307 (351)
124 2knc_A Integrin alpha-IIB; tra 25.2 99 0.0034 21.6 4.2 20 521-540 11-30 (54)
125 4ev6_A Magnesium transport pro 23.3 2.8E+02 0.0097 27.1 9.1 24 492-515 278-301 (339)
126 2k1a_A Integrin alpha-IIB; sin 21.3 1.5E+02 0.005 19.6 4.2 20 521-540 9-28 (42)
127 3rko_J NADH-quinone oxidoreduc 20.6 3.3E+02 0.011 24.2 7.9 16 456-471 4-19 (184)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-39 Score=322.38 Aligned_cols=231 Identities=16% Similarity=0.199 Sum_probs=182.0
Q ss_pred CCCCCCCCCChHHHHHHHcC-------------CHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHH
Q 007778 112 NKDSPGKRGDLQLHLAARAG-------------NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178 (590)
Q Consensus 112 ~~~~~~~~g~t~Lh~Aa~~G-------------~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~L 178 (590)
+++.+|.+|.||||+|+..| +.++++.|++.+.+. .+..|..|.||||+|+..|+.+++++|
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~L 76 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-----HNQTDRTGETALHLAARYSRSDAAKRL 76 (253)
T ss_dssp -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc-----ccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence 46778999999999999988 899999999987642 355689999999999999999999999
Q ss_pred HhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhh
Q 007778 179 LQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA 258 (590)
Q Consensus 179 l~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~ 258 (590)
++. +.+++..+..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.|+++ +..
T Consensus 77 l~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~ 153 (253)
T 1yyh_A 77 LEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAV 153 (253)
T ss_dssp HHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCB
T ss_pred HHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCc
Confidence 997 66788889999999999999999999999999998667888999999999999999999999999999997 778
Q ss_pred ccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHH
Q 007778 259 RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338 (590)
Q Consensus 259 d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~ 338 (590)
|..|.||||+|+..|+.+++++|+++|++++. .|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+
T Consensus 154 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~ 231 (253)
T 1yyh_A 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQ 231 (253)
T ss_dssp CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccCCCCHHHHHH
Confidence 99999999999999999999999999999887 4999999999999999999999999999887 899999999999999
Q ss_pred HcCCchhhhccccc
Q 007778 339 KKGRTQEAGAAHSK 352 (590)
Q Consensus 339 ~~g~~~~~~~l~~~ 352 (590)
.+|+.+.+..+...
T Consensus 232 ~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 232 ERMHHDIVRLLDLE 245 (253)
T ss_dssp HTTCHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHH
Confidence 99999988777543
No 2
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5e-38 Score=307.78 Aligned_cols=222 Identities=26% Similarity=0.329 Sum_probs=207.3
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC
Q 007778 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA 191 (590)
Q Consensus 112 ~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 191 (590)
+.+.++..|.||||+||..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++. +...+..+
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~ 74 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN------IDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKD 74 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCC
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC------cCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCC
Confidence 5677899999999999999999999999998765 577889999999999999999999999997 56778889
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHH
Q 007778 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271 (590)
Q Consensus 192 ~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~ 271 (590)
..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus 75 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 153 (237)
T 3b7b_A 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAF 153 (237)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHH
Confidence 999999999999999999999999996667888999999999999999999999999999997 7789999999999999
Q ss_pred cCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCch
Q 007778 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344 (590)
Q Consensus 272 ~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~ 344 (590)
.|+.+++++|+++|++++. .|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+.+|+.+
T Consensus 154 ~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~~~~~~ 224 (237)
T 3b7b_A 154 SGCVDIAEILLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASLNSQVW 224 (237)
T ss_dssp HCCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHSCTTCHHH
T ss_pred CCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC-CccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987 4999999999999999999999999999887 899999999999999987653
No 3
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.9e-38 Score=314.98 Aligned_cols=222 Identities=20% Similarity=0.189 Sum_probs=188.5
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCC
Q 007778 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR 192 (590)
Q Consensus 113 ~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 192 (590)
.+..|..|+||||+||+.|+.++|++|++.+... ..++.+|..|.||||+|+..|+.+++++|+++ +.+++..+.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~ 76 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAER 76 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCC
Confidence 3568999999999999999999999999986642 33688899999999999999999999999998 667888899
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhccCCCC----------------------------------------------ccccCC
Q 007778 193 NGYDSFHVAAKQGHLEVLKELLGEFPNL----------------------------------------------VMTTDL 226 (590)
Q Consensus 193 ~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~----------------------------------------------~~~~d~ 226 (590)
.|.||||+|+..|+.+++++|++.+++. .+..|.
T Consensus 77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 1oy3_D 77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156 (282)
T ss_dssp TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence 9999999999999999999999987652 445688
Q ss_pred CCCcHHHHHHHcCChhHHHHhhhcCCchhhhhc-cCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHh
Q 007778 227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK 305 (590)
Q Consensus 227 ~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d-~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~ 305 (590)
.|.||||+|+..|+.+++++|+++|+++ +..+ ..|.||||+|+..|+.+++++|+++|++++. +|..|+||||+|+.
T Consensus 157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~ 234 (282)
T 1oy3_D 157 DGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA-RMYGGRTPLGSALL 234 (282)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHT
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc-cccCCCCHHHHHHH
Confidence 9999999999999999999999999998 4455 4599999999999999999999999999987 59999999999999
Q ss_pred CCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCC
Q 007778 306 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 342 (590)
Q Consensus 306 ~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~ 342 (590)
.|+.+++++|+++|+++ +.+|.+|.|||++|....+
T Consensus 235 ~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 235 RPNPILARLLRAHGAPE-PEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp SSCHHHHHHHHHTTCCC-CCCC---------------
T ss_pred cCCcHHHHHHHHcCCCc-CcCCCcccccccccCCccc
Confidence 99999999999999987 9999999999999987543
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.4e-38 Score=307.97 Aligned_cols=230 Identities=22% Similarity=0.261 Sum_probs=202.5
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 007778 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193 (590)
Q Consensus 114 ~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 193 (590)
+.+|.+|+||||+||..|+.+++++|++..... ...++..|..|.||||+|+..|+.+++++|++. +.+.+..+..
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~ 78 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRH 78 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTT
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCC
Confidence 467899999999999999999999999731100 122678899999999999999999999999997 5677888999
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCC---CccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhc-cCCchHHHHH
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPN---LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-NNGKTVLHSA 269 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~---~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d-~~g~tpLh~A 269 (590)
|.||||+|+..|+.+++++|++.++. ..+..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|
T Consensus 79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHA 157 (241)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHH
Confidence 99999999999999999999999872 35677899999999999999999999999999998 4455 7899999999
Q ss_pred HHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhcc
Q 007778 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAA 349 (590)
Q Consensus 270 a~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l 349 (590)
+..|+.+++++|+++|++++. .|..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+.+..+
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 158 VENNSLSMVQLLLQHGANVNA-QMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp HHTTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred HHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 999999999999999999886 4999999999999999999999999999887 89999999999999999888877665
Q ss_pred c
Q 007778 350 H 350 (590)
Q Consensus 350 ~ 350 (590)
.
T Consensus 236 ~ 236 (241)
T 1k1a_A 236 A 236 (241)
T ss_dssp -
T ss_pred c
Confidence 4
No 5
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.6e-37 Score=299.12 Aligned_cols=222 Identities=27% Similarity=0.324 Sum_probs=204.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCc
Q 007778 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD 196 (590)
Q Consensus 117 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 196 (590)
+..+++|||.|++.|+.+.+++|++.++. .++..|..|.||||+|+..|+.+++++|++. +.+++..+..|.|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t 75 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKS-----LATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWS 75 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCC
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchh-----hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCC
Confidence 45688999999999999999999987653 3678899999999999999999999999998 5677888999999
Q ss_pred HHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHH
Q 007778 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 276 (590)
Q Consensus 197 ~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~e 276 (590)
|||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+
T Consensus 76 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 76 PLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHH
Confidence 99999999999999999999988 5678899999999999999999999999999997 778999999999999999999
Q ss_pred HHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhcc
Q 007778 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAA 349 (590)
Q Consensus 277 iv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l 349 (590)
++++|+++|++++. +|..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..++.+....+
T Consensus 154 ~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 154 MVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp HHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccc-cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 99999999999886 4999999999999999999999999999887 89999999999999887766655444
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=307.47 Aligned_cols=210 Identities=18% Similarity=0.216 Sum_probs=194.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHH
Q 007778 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF 198 (590)
Q Consensus 119 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L 198 (590)
+|+||||+||..|+.+++++|++.+.+ ++..|.+|.||||+|+..|+.+++++|+++ +.+++..|.+|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L 73 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPL 73 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHH
Confidence 589999999999999999999998764 678899999999999999999999999998 577888999999999
Q ss_pred HHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHH
Q 007778 199 HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278 (590)
Q Consensus 199 h~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv 278 (590)
|+|+..|+.+++++|++.+++.. .+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v 150 (261)
T 2xai_A 74 FNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACV 150 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHH
Confidence 99999999999999999998854 3556999999999999999999999999997 77899999999999999999999
Q ss_pred HHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCC
Q 007778 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 342 (590)
Q Consensus 279 ~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~ 342 (590)
++|+++|++++ .|..|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+.++.
T Consensus 151 ~~Ll~~g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpl~~A~~~~~ 211 (261)
T 2xai_A 151 KKLLESGADVN--QGKGQDSPLHAVARTASEELACLLMDFGADT-QAKNAEGKRPVELVPPESP 211 (261)
T ss_dssp HHHHHHTCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSCTTCT
T ss_pred HHHHHcCCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCChhhhcccccc
Confidence 99999999988 3889999999999999999999999999987 9999999999999996553
No 7
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.8e-37 Score=298.19 Aligned_cols=212 Identities=28% Similarity=0.420 Sum_probs=192.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccccc-CCCCCCcHH
Q 007778 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI-PARNGYDSF 198 (590)
Q Consensus 120 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-~~~~g~t~L 198 (590)
|+||||+||+.|+.++++.|++.++. ..+..|..|.||||+|+..|+.+++++|++.+...+... .+..|.|||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L 76 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGG-----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCcc-----ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHH
Confidence 78999999999999999999998764 255689999999999999999999999999854455555 788999999
Q ss_pred HHHHHcCCHHHHHHHhccC--CCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHH
Q 007778 199 HVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 276 (590)
Q Consensus 199 h~Aa~~g~~~iv~~LL~~~--~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~e 276 (590)
|+|+..|+.+++++|++.+ ++ .+..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+
T Consensus 77 ~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 154 (228)
T 2dzn_A 77 HIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK 154 (228)
T ss_dssp HHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999998 55 6677899999999999999999999999999997 778999999999999999999
Q ss_pred HHHHHHhcC-CCCccccCCCCCCHHHHHHhCCCHHHHHHHh-cCCCcccccccCCCCCHHHHHHHc
Q 007778 277 VVKALVSKD-PSTGFRTDKKGQTALHMAVKGQNEDIVLELI-RPDPSVLKLEDNKGNTALHIAIKK 340 (590)
Q Consensus 277 iv~~Ll~~~-~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll-~~~~~~~~~~d~~G~TpLh~A~~~ 340 (590)
++++|++.| .+++. +|..|+||||+|+..|+.+++++|+ +.|+++ +.+|.+|+||||+|+..
T Consensus 155 ~v~~Ll~~g~~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 155 LIELLCGLGKSAVNW-QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHHHTTTCCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCBCTTSCBGGGGCSST
T ss_pred HHHHHHhcCcccccC-cCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCcHHHHHHHH
Confidence 999999999 66665 5999999999999999999999999 788876 89999999999999654
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.3e-37 Score=308.49 Aligned_cols=223 Identities=18% Similarity=0.188 Sum_probs=203.1
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC
Q 007778 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA 191 (590)
Q Consensus 112 ~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 191 (590)
..+..+..|+||||+||..|+.+++++|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++. +.+++..+
T Consensus 51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~ 122 (285)
T 3d9h_A 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVT 122 (285)
T ss_dssp TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC------SCEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCC
T ss_pred cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCC
Confidence 3566899999999999999999999999998764 678899999999999999999999999998 67788899
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHH
Q 007778 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271 (590)
Q Consensus 192 ~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~ 271 (590)
.+|.||||+|+..|+.+++++|++.+++.. .+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+.
T Consensus 123 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 199 (285)
T 3d9h_A 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACE 199 (285)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHH
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence 999999999999999999999999998854 3456999999999999999999999999997 7789999999999999
Q ss_pred cCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhccc
Q 007778 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAH 350 (590)
Q Consensus 272 ~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~ 350 (590)
.|+.+++++|+++|++++ .|..|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+. +.+.+..+.
T Consensus 200 ~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~--~~~~~~~Ll 273 (285)
T 3d9h_A 200 NQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVPP--ESPLAQLFL 273 (285)
T ss_dssp TTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSCT--TSHHHHHHH
T ss_pred cCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHhcC--ccHHHHHHH
Confidence 999999999999999987 3889999999999999999999999999887 9999999999999983 344444443
No 9
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-36 Score=325.97 Aligned_cols=222 Identities=30% Similarity=0.387 Sum_probs=119.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCc
Q 007778 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD 196 (590)
Q Consensus 117 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 196 (590)
+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++ +......+.+|.|
T Consensus 143 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t 214 (437)
T 1n11_A 143 TKKGFTPLHVAAKYGKVRVAELLLERDAH------PNAAGKNGLTPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYT 214 (437)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCSSCCCHHHHHHHTTCHHHHHHHGGG--TCCSCCCCTTCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCcCCCCCC
Confidence 33444444444444444444444443332 234444555555555555555555555554 2233444445555
Q ss_pred HHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHH
Q 007778 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 276 (590)
Q Consensus 197 ~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~e 276 (590)
|||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+
T Consensus 215 ~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~ 292 (437)
T 1n11_A 215 PLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVP 292 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHH
Confidence 55555555555555555555544 3344555555555555555555555555555554 445555566666666666666
Q ss_pred HHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhccc
Q 007778 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAH 350 (590)
Q Consensus 277 iv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~ 350 (590)
++++|+++|.+++. +|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+.+..+.
T Consensus 293 ~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~L~~A~~~g~~~iv~~Ll 364 (437)
T 1n11_A 293 VADVLIKHGVMVDA-TTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLL 364 (437)
T ss_dssp HHHHHHHHTCCTTC-CCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCccCCC-CCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHCChHHHHHHHH
Confidence 66666665555544 3555666666666666666666666655554 555666666666666666655555553
No 10
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.3e-36 Score=300.47 Aligned_cols=231 Identities=23% Similarity=0.288 Sum_probs=208.7
Q ss_pred cCCCCC-CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccccc
Q 007778 111 KNKDSP-GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI 189 (590)
Q Consensus 111 ~~~~~~-~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~ 189 (590)
.+.+.. +..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++ +...+.
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~ 100 (285)
T 1wdy_A 29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------PVLRKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNE 100 (285)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTC
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCc
Confidence 445555 78899999999999999999999998765 577889999999999999999999999997 567788
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHhccCCCCcccc---------CCCCCcHHHHHHHcCChhHHHHhhhc-CCchhhhhc
Q 007778 190 PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTT---------DLSCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIAR 259 (590)
Q Consensus 190 ~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~---------d~~g~TpLh~Aa~~g~~eiv~~LL~~-g~~~~~~~d 259 (590)
.+..|.||||+|+..|+.+++++|++.+.+..... +..|.||||+|+..|+.+++++|++. |.++ +..|
T Consensus 101 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~ 179 (285)
T 1wdy_A 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACD 179 (285)
T ss_dssp BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCC
T ss_pred cCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccC
Confidence 89999999999999999999999999998744321 77899999999999999999999997 8887 7789
Q ss_pred cCCchHHHHHHHcCC----HHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhc-CCCcccccccCCCCCHH
Q 007778 260 NNGKTVLHSAARMGH----LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTAL 334 (590)
Q Consensus 260 ~~g~tpLh~Aa~~g~----~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~G~TpL 334 (590)
..|.||||.|+..++ .+++++|+++|++++. +|..|+||||+|+..|+.+++++|++ .+.++ +.+|.+|+|||
T Consensus 180 ~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~~~~g~t~l 257 (285)
T 1wdy_A 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTAL 257 (285)
T ss_dssp TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC-CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHH
T ss_pred CCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhccCCCc-cccCCCCCcHH
Confidence 999999999999999 9999999999999886 49999999999999999999999999 56655 99999999999
Q ss_pred HHHHHcCCchhhhccccc
Q 007778 335 HIAIKKGRTQEAGAAHSK 352 (590)
Q Consensus 335 h~A~~~g~~~~~~~l~~~ 352 (590)
|+|+..|+.+.+..+...
T Consensus 258 ~~A~~~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 258 LLAVELKLKKIAELLCKR 275 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHc
Confidence 999999999988887544
No 11
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.1e-37 Score=321.68 Aligned_cols=228 Identities=18% Similarity=0.252 Sum_probs=203.1
Q ss_pred ccCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccccc
Q 007778 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI 189 (590)
Q Consensus 110 ~~~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~ 189 (590)
+.+.+..|..|.||||+||..|+.++|++|++.+.+ ++..|..|.||||+|+..|+.++|++|++++. ..
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~ 79 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS------PTIQNRFGCTALHLACKFGCVDTAKYLASVGE----VH 79 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CC
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----Cc
Confidence 455667789999999999999999999999998765 67889999999999999999999999999832 44
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHhcc----CCCCccc-----------------cCCCCCcHHHHHHHcC--ChhHHHH
Q 007778 190 PARNGYDSFHVAAKQGHLEVLKELLGE----FPNLVMT-----------------TDLSCSTALHTAAAQG--HIDVVNF 246 (590)
Q Consensus 190 ~~~~g~t~Lh~Aa~~g~~~iv~~LL~~----~~~~~~~-----------------~d~~g~TpLh~Aa~~g--~~eiv~~ 246 (590)
.+.+|.||||+|+..|+.+++++|++. +.+ .+. .|..|.||||+|+..| +.+++++
T Consensus 80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~ 158 (364)
T 3ljn_A 80 SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158 (364)
T ss_dssp CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence 456899999999999999999999998 555 223 6788999999999999 9999999
Q ss_pred hhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCC-----CccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCc
Q 007778 247 LLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS-----TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321 (590)
Q Consensus 247 LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~-----~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~ 321 (590)
|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++ ++. .|..|+||||+|+..|+.+++++|+++|++
T Consensus 159 Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 236 (364)
T 3ljn_A 159 LVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY-ANKQGNSHLHWAILINWEDVAMRFVEMGID 236 (364)
T ss_dssp HHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC-CCTTCCCTTHHHHTTTCHHHHHHHHTTTCC
T ss_pred HHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999997 77899999999999999999999999999998 665 599999999999999999999999999988
Q ss_pred ccccccCCCCCHHHHHHHcCCchhhhcccc
Q 007778 322 VLKLEDNKGNTALHIAIKKGRTQEAGAAHS 351 (590)
Q Consensus 322 ~~~~~d~~G~TpLh~A~~~g~~~~~~~l~~ 351 (590)
+ +.+|.+|+||||+|+..|+.+.+..+..
T Consensus 237 ~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 237 V-NMEDNEHTVPLYLSVRAAMVLLTKELLQ 265 (364)
T ss_dssp T-TCCCTTSCCHHHHHHHTCCHHHHHHHHH
T ss_pred C-CCCCCCCCCHHHHHHHhChHHHHHHHHH
Confidence 7 9999999999999999999988777643
No 12
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-35 Score=317.85 Aligned_cols=258 Identities=29% Similarity=0.385 Sum_probs=221.3
Q ss_pred CCCCcccccchhhhhHHHHhhhhhHHHHHHHHhhcCCCCcccCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhh
Q 007778 70 QPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAK 149 (590)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~ 149 (590)
....+.++++.+...|..+..+.+ + +.+.+++..+..|.||||+||..|+.+++++|++.+.+
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~L-------l------~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---- 72 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNL-------L------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---- 72 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHH-------H------HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC----
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHH-------H------HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----
Confidence 334445788888888866555533 2 23566778889999999999999999999999998764
Q ss_pred HhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCC
Q 007778 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCS 229 (590)
Q Consensus 150 ~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~ 229 (590)
++.++..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+.++++.|++.+.+ ....+..|.
T Consensus 73 --~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~ 147 (437)
T 1n11_A 73 --VNAKAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGF 147 (437)
T ss_dssp --SSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSC
T ss_pred --CCCCCCCCCCHHHHHHHCCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCC
Confidence 677889999999999999999999999998 567788889999999999999999999999999887 456678899
Q ss_pred cHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCH
Q 007778 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 309 (590)
Q Consensus 230 TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~ 309 (590)
||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++++++.. .+.+|.||||+|+..|+.
T Consensus 148 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~ 225 (437)
T 1n11_A 148 TPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQV 225 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC-CCTTCCCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCH
Confidence 9999999999999999999999987 67788999999999999999999999999998876 488999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhccccc
Q 007778 310 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHSK 352 (590)
Q Consensus 310 ~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~~~ 352 (590)
+++++|++.+.++ +.+|..|.||||+|+..|+.+.+..+...
T Consensus 226 ~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 267 (437)
T 1n11_A 226 EVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSK 267 (437)
T ss_dssp HHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence 9999999998876 88899999999999999999988777543
No 13
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-37 Score=307.89 Aligned_cols=222 Identities=26% Similarity=0.306 Sum_probs=173.0
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHhcCCch--hhhHhhcccCCCCCcHHHHHHHhCCHH-HHHHHHhcCCccccccCC
Q 007778 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDAN--EAKDLLSKKNQEGETPLYVAAESGHAL-IVEEMLQHMNLETASIPA 191 (590)
Q Consensus 115 ~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~--~~~~~l~~~n~~g~TpLh~Aa~~g~~~-iv~~Ll~~~~~~~~~~~~ 191 (590)
.+|.++.++|+.||+.|+.++|++||+.+... .....++..+..|.||||.|+..++.+ +++.|++. +.+++..|
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d 83 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTS 83 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C--CCCTTCCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcC
Confidence 35667889999999999999999999987642 112335677889999999999988765 78888887 67788999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHH
Q 007778 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271 (590)
Q Consensus 192 ~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~ 271 (590)
.+|.||||+|+..|+.+++++|++.+++ .+..+..|.||+|+|+..++.+++++|++.|+++ +..|..|.||||+|+.
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACS 161 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999988 5678899999999999999999999999999998 7789999999999999
Q ss_pred cCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCC
Q 007778 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 342 (590)
Q Consensus 272 ~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~ 342 (590)
.|+.++|++|+++|++++. +|..|+||||+|+..|+.++|++|+++|+++ +.+|.+|+||||+|+++++
T Consensus 162 ~g~~~~v~~Ll~~gadvn~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 162 GGHHELVALLLQHGASINA-SNNKGNTALHEAVIEKHVFVVELLLLHGASV-QVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TTCGGGHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCSGGGSCTTCH
T ss_pred CCCHHHHHHHHHCCCCCCc-cccCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHhCCc
Confidence 9999999999999999986 4999999999999999999999999999887 9999999999999987764
No 14
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.6e-35 Score=302.96 Aligned_cols=229 Identities=24% Similarity=0.241 Sum_probs=140.9
Q ss_pred cccCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccc
Q 007778 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETAS 188 (590)
Q Consensus 109 ~~~~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~ 188 (590)
.+.+.+.+|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++ +..++
T Consensus 47 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~ 118 (351)
T 3utm_A 47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD------VHAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVN 118 (351)
T ss_dssp TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTT
T ss_pred cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCC
Confidence 4556677788888888888888888888888887654 567788888888888888888888888887 55667
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHH---------------------HHcCChhHHHHh
Q 007778 189 IPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA---------------------AAQGHIDVVNFL 247 (590)
Q Consensus 189 ~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~A---------------------a~~g~~eiv~~L 247 (590)
..+..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||+|+| +..++.+.++.+
T Consensus 119 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (351)
T 3utm_A 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKT 197 (351)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHH
Confidence 7788888888888888888888888888776 333444444433322 222222333333
Q ss_pred hhcCCchhhhhccCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccc
Q 007778 248 LEIDSNLAKIARNNGKTVLHSAARM---GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 324 (590)
Q Consensus 248 L~~g~~~~~~~d~~g~tpLh~Aa~~---g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~ 324 (590)
+..+... ...+..|.||||+|+.. +..+++++|+++|++++. +|..|+||||+|+..|+.+++++|++.|+++ +
T Consensus 198 l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n 274 (351)
T 3utm_A 198 LALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-N 274 (351)
T ss_dssp TTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-T
T ss_pred HHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C
Confidence 3222211 12234455555555555 334555555555555443 2555555555555555555555555555444 4
Q ss_pred cccCCCCCHHHHHHHcCCchhhhcc
Q 007778 325 LEDNKGNTALHIAIKKGRTQEAGAA 349 (590)
Q Consensus 325 ~~d~~G~TpLh~A~~~g~~~~~~~l 349 (590)
.+|..|+||||+|+..|+.+.+..+
T Consensus 275 ~~d~~g~t~L~~A~~~~~~~~v~~L 299 (351)
T 3utm_A 275 ALDSLGQTALHRAALAGHLQTCRLL 299 (351)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 5555555555555555555554444
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.3e-36 Score=315.50 Aligned_cols=231 Identities=19% Similarity=0.264 Sum_probs=206.8
Q ss_pred cCCCCCC-CCCChHHHHHHHcCCHHHHHHHH--------hcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 007778 111 KNKDSPG-KRGDLQLHLAARAGNLSRVMEIL--------QSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181 (590)
Q Consensus 111 ~~~~~~~-~~g~t~Lh~Aa~~G~~~~v~~Ll--------~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~ 181 (590)
...+..+ ..|.||||+||..|+.++++.|+ +.+.+ ++.+|..|.||||+|+..|+.++|++|+++
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 188 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKA 188 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC------CcCCCCCCCCHHHHHHHcChHHHHHHHHHC
Confidence 4567777 78999999999999999888887 45543 678899999999999999999999999998
Q ss_pred CCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccC---CCCccccCCCCCcHHHHHHHcC---ChhHHHHhhhcCCchh
Q 007778 182 MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF---PNLVMTTDLSCSTALHTAAAQG---HIDVVNFLLEIDSNLA 255 (590)
Q Consensus 182 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~---~~~~~~~d~~g~TpLh~Aa~~g---~~eiv~~LL~~g~~~~ 255 (590)
+.+++..+.+|.||||+|+..|+.+++++|++.+ .+ .+..|..|.||||+|+..+ +.+++++|+++|+++.
T Consensus 189 --ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~ 265 (373)
T 2fo1_E 189 --GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD 265 (373)
T ss_dssp --TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT-TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSS
T ss_pred --CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC-hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcc
Confidence 6677888999999999999999999999999987 34 5678999999999999998 8999999999999873
Q ss_pred h-------hhccCCchHHHHHHHcCCHHHHHHHHhcC-CCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCccccccc
Q 007778 256 K-------IARNNGKTVLHSAARMGHLEVVKALVSKD-PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED 327 (590)
Q Consensus 256 ~-------~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~-~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d 327 (590)
. ..|..|.||||+|+..|+.++|++|++++ .+++. +|..|+||||+|+..|+.+++++|+++|+++ +.+|
T Consensus 266 ~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~-~~~d 343 (373)
T 2fo1_E 266 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK-QDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVD 343 (373)
T ss_dssp CCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCC
T ss_pred cccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cCCC
Confidence 2 25678999999999999999999999987 67665 5999999999999999999999999999887 8999
Q ss_pred CCCCCHHHHHHHcCCchhhhccccc
Q 007778 328 NKGNTALHIAIKKGRTQEAGAAHSK 352 (590)
Q Consensus 328 ~~G~TpLh~A~~~g~~~~~~~l~~~ 352 (590)
..|+||||+|+.+|+.+.+..+...
T Consensus 344 ~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 344 ATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp SSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 9999999999999999988877543
No 16
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.1e-35 Score=305.50 Aligned_cols=226 Identities=27% Similarity=0.323 Sum_probs=199.4
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 007778 116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY 195 (590)
Q Consensus 116 ~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~ 195 (590)
.+..|.|+||.||+.|+.+.++.|+...+. .++..|..|.||||+|+..|+.+++++|+++ +.+++..+.+|.
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~ 92 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPLNV-----NCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGL 92 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTTTT-----TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCC
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhcCC-----CcccCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCC
Confidence 355677999999999999999999986442 2678899999999999999999999999998 667888999999
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHH------
Q 007778 196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA------ 269 (590)
Q Consensus 196 t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~A------ 269 (590)
||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||+|+|
T Consensus 93 t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~ 170 (351)
T 3utm_A 93 VPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELR 170 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHH
T ss_pred cHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhH
Confidence 999999999999999999999988 5678899999999999999999999999999997 77788999987764
Q ss_pred ---------------HHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhC---CCHHHHHHHhcCCCcccccccCCCC
Q 007778 270 ---------------ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKGN 331 (590)
Q Consensus 270 ---------------a~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~G~ 331 (590)
+..++.+.++.++........ .+..|.||||+|+.. ++.+++++|++.+.++ +.+|.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~ 248 (351)
T 3utm_A 171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFM 248 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCC-CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCC
T ss_pred HHHHhhhcccHHHHHHHhccHHHHHHHHHhhccccc-CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCC
Confidence 566777788888877654443 588999999999999 5689999999999887 89999999
Q ss_pred CHHHHHHHcCCchhhhccccc
Q 007778 332 TALHIAIKKGRTQEAGAAHSK 352 (590)
Q Consensus 332 TpLh~A~~~g~~~~~~~l~~~ 352 (590)
||||+|+..|+.+.+..+...
T Consensus 249 t~L~~A~~~g~~~~v~~Ll~~ 269 (351)
T 3utm_A 249 TPLHVAAERAHNDVMEVLHKH 269 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHC
Confidence 999999999999988877543
No 17
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=300.76 Aligned_cols=242 Identities=21% Similarity=0.230 Sum_probs=184.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCchh-----hhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC
Q 007778 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANE-----AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA 191 (590)
Q Consensus 117 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~-----~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 191 (590)
..+|.|+||+|+..|+.+.+..++..++.+. ....++..|..|+||||+|+..|+.+++++|++. +.+++..|
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~ 89 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIIT 89 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEEC
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcC
Confidence 5689999999999999888888776543210 1122567899999999999999999999999997 56788899
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHH
Q 007778 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271 (590)
Q Consensus 192 ~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~ 271 (590)
.+|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.|+++. .+.+|.||||+|+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAAR 166 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH
Confidence 9999999999999999999999999988 66789999999999999999999999999999873 35569999999999
Q ss_pred cCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhcccc
Q 007778 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHS 351 (590)
Q Consensus 272 ~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~~ 351 (590)
.|+.+++++|+++|++++. .|.+|+||||+|+..|+.+++++|++.++++ + .|..|+||||+|+..|+.+.+..+..
T Consensus 167 ~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGNIDH-KISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMD 243 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTC-CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999886 4999999999999999999999999999887 5 48999999999999999998887754
Q ss_pred ccCCCCccHHHHHHHhH
Q 007778 352 KDHGKPPSATKQLKQTV 368 (590)
Q Consensus 352 ~~~~~~~~~~~~~~~~~ 368 (590)
. +.+++..+..++++
T Consensus 244 ~--gad~~~~d~~g~t~ 258 (285)
T 3d9h_A 244 F--GADTQAKNAEGKRP 258 (285)
T ss_dssp T--TCCTTCCCTTSCCG
T ss_pred C--CCCCCCcCCCCCCH
Confidence 3 44444333333333
No 18
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.6e-35 Score=285.07 Aligned_cols=228 Identities=21% Similarity=0.251 Sum_probs=205.2
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 007778 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193 (590)
Q Consensus 114 ~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 193 (590)
+..|..|.|+||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+ .......+..
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~ 75 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD------VRQPDKENVTLLHWAAINNRIDLVKYYISKG-AIVDQLGGDL 75 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTT
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCC------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC-CcchhhcCCc
Confidence 45688999999999999999999999998764 5778899999999999999999999999983 3333445566
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcC
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g 273 (590)
|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..+
T Consensus 76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~ 153 (240)
T 3eu9_A 76 NSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRT 153 (240)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHC
T ss_pred CCChhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhC
Confidence 99999999999999999999999888 5667899999999999999999999999999997 778999999999999777
Q ss_pred C-HHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhcccc
Q 007778 274 H-LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHS 351 (590)
Q Consensus 274 ~-~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~~ 351 (590)
+ .+++++|++.+++++...+..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|++.|+.+.+..+..
T Consensus 154 ~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 154 HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp CSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 6 899999999999998764449999999999999999999999999887 8999999999999999999998877643
No 19
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-34 Score=289.78 Aligned_cols=221 Identities=27% Similarity=0.362 Sum_probs=202.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhccc-CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcH
Q 007778 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK-NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS 197 (590)
Q Consensus 119 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~-n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 197 (590)
.|+||||.|++.|+.+++++|++.+.+ ++.. +..|.||||+|+..|+.+++++|++. +.+++..+.+|.||
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~ 75 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC------cccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCH
Confidence 578999999999999999999998764 3444 78899999999999999999999998 56778889999999
Q ss_pred HHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhh----------ccCCchHHH
Q 007778 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA----------RNNGKTVLH 267 (590)
Q Consensus 198 Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~----------d~~g~tpLh 267 (590)
||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|++.|+++ +.. +..|.||||
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHH
Confidence 9999999999999999999988 5678899999999999999999999999999987 333 778999999
Q ss_pred HHHHcCCHHHHHHHHhc-CCCCccccCCCCCCHHHHHHhCCC----HHHHHHHhcCCCcccccccCCCCCHHHHHHHcCC
Q 007778 268 SAARMGHLEVVKALVSK-DPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 342 (590)
Q Consensus 268 ~Aa~~g~~eiv~~Ll~~-~~~~~~~~d~~G~T~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~ 342 (590)
.|+..|+.+++++|++. +.+++. .|..|+||||+|+..++ .+++++|++.|.++ +.+|..|+||||+|+..|+
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTTC-CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHhcCCCCCc-cCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCC
Confidence 99999999999999998 888775 59999999999999999 99999999999887 8999999999999999999
Q ss_pred chhhhcccc
Q 007778 343 TQEAGAAHS 351 (590)
Q Consensus 343 ~~~~~~l~~ 351 (590)
.+.+..+..
T Consensus 232 ~~~v~~Ll~ 240 (285)
T 1wdy_A 232 LGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998877754
No 20
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.8e-35 Score=282.33 Aligned_cols=195 Identities=24% Similarity=0.292 Sum_probs=135.5
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCc
Q 007778 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD 196 (590)
Q Consensus 117 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 196 (590)
|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.. ....+..+..|.|
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t 94 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTT 94 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT-TSCTTCCCTTCCC
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCc
Confidence 66777777777777777777777766543 4556667777777777777777777777652 3345566667777
Q ss_pred HHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHH
Q 007778 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 276 (590)
Q Consensus 197 ~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~e 276 (590)
|||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+
T Consensus 95 ~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 172 (223)
T 2f8y_A 95 PLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYE 172 (223)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHH
Confidence 77777777777777777776666 4456666777777777777777777777777765 556667777777777777777
Q ss_pred HHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCc
Q 007778 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321 (590)
Q Consensus 277 iv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~ 321 (590)
++++|+++|++++. +|..|.||||+|+..++.+++++|+++|..
T Consensus 173 ~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 173 TAKVLLDHFANRDI-TDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp HHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHcCCCCcc-ccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 77777777776654 366777777777777777777777776653
No 21
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=289.88 Aligned_cols=241 Identities=20% Similarity=0.198 Sum_probs=205.8
Q ss_pred cccchhhhhHHHHhhhhhHHHHHHHHhhcCCCCcccCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhccc
Q 007778 76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK 155 (590)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~ 155 (590)
++++.+...+..+..+ ..++ .+.+++.+|..|.||||+|+..|+.++++.|++.+.+ ++..
T Consensus 5 t~L~~A~~~g~~~~v~-------~Ll~------~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~ 65 (261)
T 2xai_A 5 SPMHEAAIHGHQLSLR-------NLIS------QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ------VNGV 65 (261)
T ss_dssp CHHHHHHHHTCHHHHH-------HHHH------TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------TTCC
T ss_pred CHHHHHHHcCCHHHHH-------HHHH------CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCC
Confidence 5566666666544433 2222 3567888999999999999999999999999998765 6788
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHH
Q 007778 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA 235 (590)
Q Consensus 156 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~A 235 (590)
|..|.||||+|+..|+.+++++|++++ ...+ .+.+|.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|
T Consensus 66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 141 (261)
T 2xai_A 66 TADWHTPLFNACVSGSWDCVNLLLQHG--ASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLA 141 (261)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSS-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCcCCCCCCCHHHHH
Confidence 999999999999999999999999983 3443 345699999999999999999999999988 667899999999999
Q ss_pred HHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHH
Q 007778 236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315 (590)
Q Consensus 236 a~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~L 315 (590)
+..|+.+++++|+++|+++. .+..|.||||+|+..|+.+++++|+++|++++. +|.+|+||||+|+.++ +++++|
T Consensus 142 ~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~tpl~~A~~~~--~~~~~l 216 (261)
T 2xai_A 142 CENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEELACLLMDFGADTQA-KNAEGKRPVELVPPES--PLAQLF 216 (261)
T ss_dssp HHTTCHHHHHHHHHHTCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCGGGGSCTTC--THHHHH
T ss_pred HHhCCHHHHHHHHHcCCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCChhhhccccc--cHHHHH
Confidence 99999999999999999984 388999999999999999999999999999886 5999999999999665 488999
Q ss_pred hcCCCc-------ccccccCCCCCHHHHHHHcCCch
Q 007778 316 IRPDPS-------VLKLEDNKGNTALHIAIKKGRTQ 344 (590)
Q Consensus 316 l~~~~~-------~~~~~d~~G~TpLh~A~~~g~~~ 344 (590)
++.+.. .++.+|..|+||+|.|.+...++
T Consensus 217 l~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~ 252 (261)
T 2xai_A 217 LEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252 (261)
T ss_dssp HHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCH
T ss_pred HhccCCccHHHHHHHHHHHHhchhccccCcccCCcH
Confidence 987653 24678999999999998765544
No 22
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=6.6e-35 Score=295.85 Aligned_cols=214 Identities=21% Similarity=0.248 Sum_probs=192.9
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCC
Q 007778 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG 194 (590)
Q Consensus 115 ~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g 194 (590)
..+..|.||||.||..|+.++|+.|++.+.+ ++..|..|.||||+|+..|+.+++++|+++ +.+++..+..|
T Consensus 35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g 106 (299)
T 1s70_B 35 KVKFDDGAVFLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEG 106 (299)
T ss_dssp CCEECHHHHHHHHHHHTCHHHHHHHHHHCCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTS
T ss_pred ccccCCccHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCC
Confidence 3456788999999999999999999998865 678899999999999999999999999997 67788889999
Q ss_pred CcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhc-CCchh------------------
Q 007778 195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI-DSNLA------------------ 255 (590)
Q Consensus 195 ~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~-g~~~~------------------ 255 (590)
.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..++.++++.++.. +.++.
T Consensus 107 ~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (299)
T 1s70_B 107 WIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL 185 (299)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999988 567899999999999999999999988764 44331
Q ss_pred -------hhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccC
Q 007778 256 -------KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328 (590)
Q Consensus 256 -------~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~ 328 (590)
...+..|.||||+|+..|+.+++++|+++|++++. +|..|+||||+|+..|+.+++++|+++|+++ +.+|.
T Consensus 186 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~ 263 (299)
T 1s70_B 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAAAHWGKEEACRILVENLCDM-EAVNK 263 (299)
T ss_dssp HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred hccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC-CCcCC
Confidence 11356799999999999999999999999999986 4999999999999999999999999999887 89999
Q ss_pred CCCCHHHHHHH
Q 007778 329 KGNTALHIAIK 339 (590)
Q Consensus 329 ~G~TpLh~A~~ 339 (590)
.|+||||+|..
T Consensus 264 ~g~t~l~~A~~ 274 (299)
T 1s70_B 264 VGQTAFDVADE 274 (299)
T ss_dssp TSCCTTTSCCS
T ss_pred CCCCHHHHHHH
Confidence 99999999954
No 23
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=9.7e-36 Score=291.81 Aligned_cols=221 Identities=20% Similarity=0.284 Sum_probs=190.2
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 007778 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193 (590)
Q Consensus 114 ~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 193 (590)
+..|.+|+||||+|+..|+.+++++|++.+... ...++..|..|.||||+|+..|+.+++++|++. +.+++..+..
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~ 77 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFR 77 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTT
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhcc--HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCC
Confidence 457889999999999999999999999876532 123788899999999999999999999999997 5678888999
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCC-----CccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhcc-CCchHHH
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPN-----LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN-NGKTVLH 267 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~-----~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~-~g~tpLh 267 (590)
|.||||+|+..|+.+++++|++.+++ .....|..|.||||+|+..|+.+++++|+++|+++ +..+. .|.||||
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~ 156 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALH 156 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHH
Confidence 99999999999999999999998864 25677889999999999999999999999999998 56666 9999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCccc-ccccCCCCCHHHHHHHc
Q 007778 268 SAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL-KLEDNKGNTALHIAIKK 340 (590)
Q Consensus 268 ~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~-~~~d~~G~TpLh~A~~~ 340 (590)
+|+..|+.+++++|+++|++++. .|..|+||||+|+..|+.+++++|+++|++.. ..++..|.||.+.+...
T Consensus 157 ~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 157 LAVDLQNPDLVSLLLKCGADVNR-VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHHTTCHHHHHHHHTTTCCSCC-CCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHHcCCHHHHHHHHHcCCCCCc-ccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 99999999999999999999886 49999999999999999999999999998653 57888999988766543
No 24
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.7e-35 Score=307.93 Aligned_cols=254 Identities=16% Similarity=0.167 Sum_probs=213.0
Q ss_pred CCCCcccccchhhhhHHHHhhhhhHHHHHHHHhhcCCCCcccCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhh
Q 007778 70 QPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAK 149 (590)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~ 149 (590)
.+..+.++++.+...+..+..+.+ ++ .+.+++..|..|.||||+||..|+.++|++|++.+..
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~L-------l~------~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---- 78 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRL-------IE------TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV---- 78 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHH-------HH------TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC----
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHH-------HH------cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC----
Confidence 333444777888877765555433 22 3567888999999999999999999999999998763
Q ss_pred HhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCC--ccccc-----------------cCCCCCCcHHHHHHHcC--CHH
Q 007778 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN--LETAS-----------------IPARNGYDSFHVAAKQG--HLE 208 (590)
Q Consensus 150 ~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~--~~~~~-----------------~~~~~g~t~Lh~Aa~~g--~~~ 208 (590)
..+.+|.||||+|+..|+.+++++|++... +...+ ..+.+|.||||+|+..| +.+
T Consensus 79 ----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~ 154 (364)
T 3ljn_A 79 ----HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLE 154 (364)
T ss_dssp ----CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHH
T ss_pred ----ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHH
Confidence 334589999999999999999999999611 11222 26778999999999999 999
Q ss_pred HHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCc-----hhhhhccCCchHHHHHHHcCCHHHHHHHHh
Q 007778 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN-----LAKIARNNGKTVLHSAARMGHLEVVKALVS 283 (590)
Q Consensus 209 iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~-----~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~ 283 (590)
++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++|++ + +..|..|.||||+|+..|+.++|++|++
T Consensus 155 ~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 232 (364)
T 3ljn_A 155 MIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVE 232 (364)
T ss_dssp HHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 667899999999999999999999999999988 5 7789999999999999999999999999
Q ss_pred cCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcc-----------cccccCCCCCHHHHHHHcCCchhhh
Q 007778 284 KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV-----------LKLEDNKGNTALHIAIKKGRTQEAG 347 (590)
Q Consensus 284 ~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~-----------~~~~d~~G~TpLh~A~~~g~~~~~~ 347 (590)
+|++++. .|..|+||||+|+..|+.+++++|++++++. ....+..|+|||+.|+..|+.+.+.
T Consensus 233 ~gad~~~-~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~ 306 (364)
T 3ljn_A 233 MGIDVNM-EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306 (364)
T ss_dssp TTCCTTC-CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHH
T ss_pred cCCCCCC-CCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHH
Confidence 9999986 5999999999999999999999999987543 1235778889998888777655443
No 25
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.8e-33 Score=271.34 Aligned_cols=217 Identities=15% Similarity=0.178 Sum_probs=195.4
Q ss_pred cCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHH
Q 007778 130 AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEV 209 (590)
Q Consensus 130 ~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~i 209 (590)
.|+.+++++|++.+.+. ....|..|.||||+|+..|+.+++++|+++ +.+.+..+..|.||||+|+..|+.++
T Consensus 1 gg~~~~i~~Ll~~g~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~ 73 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASL-----HNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGV 73 (223)
T ss_dssp ----CCEETTEETTCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHHcCCCc-----ccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 36788899999887642 345589999999999999999999999998 56778889999999999999999999
Q ss_pred HHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCc
Q 007778 210 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289 (590)
Q Consensus 210 v~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~ 289 (590)
+++|++.++...+..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 74 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 152 (223)
T 2f8y_A 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152 (223)
T ss_dssp HHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 999999998668888999999999999999999999999999997 7789999999999999999999999999999988
Q ss_pred cccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhccccccCCC
Q 007778 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHSKDHGK 356 (590)
Q Consensus 290 ~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~~~~~~~ 356 (590)
. .|..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+.+..+.......
T Consensus 153 ~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 153 M-QNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp C-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred C-cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 6 4999999999999999999999999999887 899999999999999999999988886554433
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.2e-34 Score=287.68 Aligned_cols=216 Identities=21% Similarity=0.226 Sum_probs=183.7
Q ss_pred hcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCcc-ccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCc
Q 007778 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-TASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCST 230 (590)
Q Consensus 152 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~T 230 (590)
++.+|.+|+||||+|+..|+.++|++|++.+... .++..+..|.||||+|+..|+.+++++|++.+++ ++..|..|+|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence 5678999999999999999999999999873221 2778899999999999999999999999999988 5678899999
Q ss_pred HHHHHHHcCChhHHHHhhhcCCch----------------------------------------------hhhhccCCch
Q 007778 231 ALHTAAAQGHIDVVNFLLEIDSNL----------------------------------------------AKIARNNGKT 264 (590)
Q Consensus 231 pLh~Aa~~g~~eiv~~LL~~g~~~----------------------------------------------~~~~d~~g~t 264 (590)
|||+|+..|+.+++++|++++++. .+..+..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 999999999999999999987651 2456778999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCch
Q 007778 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344 (590)
Q Consensus 265 pLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~ 344 (590)
|||+|+..|+.+++++|+++|++++...+..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~ 239 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPI 239 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcH
Confidence 9999999999999999999999998764456999999999999999999999999887 999999999999999999999
Q ss_pred hhhccccccCCCCccHHHHHHHhHHHH
Q 007778 345 EAGAAHSKDHGKPPSATKQLKQTVSDI 371 (590)
Q Consensus 345 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (590)
.+..+. +.|.+++..+..+.++...
T Consensus 240 ~v~~Ll--~~ga~~~~~~~~g~tpl~~ 264 (282)
T 1oy3_D 240 LARLLR--AHGAPEPEDGGDKLSPCSS 264 (282)
T ss_dssp HHHHHH--HTTCCCCCCC---------
T ss_pred HHHHHH--HcCCCcCcCCCcccccccc
Confidence 988885 3455555555555555443
No 27
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.2e-33 Score=280.29 Aligned_cols=197 Identities=24% Similarity=0.294 Sum_probs=180.8
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 007778 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193 (590)
Q Consensus 114 ~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 193 (590)
+..|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.. ....+..+.+
T Consensus 51 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~ 123 (253)
T 1yyh_A 51 NQTDRTGETALHLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHD 123 (253)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHST-TSCTTCCCTT
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCC
Confidence 34588999999999999999999999998765 5788999999999999999999999999973 3467888999
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcC
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g 273 (590)
|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus 124 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~ 201 (253)
T 1yyh_A 124 GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREG 201 (253)
T ss_dssp CCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred CCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCC
Confidence 99999999999999999999999988 6678899999999999999999999999999997 778999999999999999
Q ss_pred CHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCC
Q 007778 274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320 (590)
Q Consensus 274 ~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~ 320 (590)
+.+++++|+++|++++. +|..|+||||+|+++|+.+++++|.....
T Consensus 202 ~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 202 SYETAKVLLDHFANRDI-TDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp CHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred CHHHHHHHHHcCCCccc-cccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 99999999999999886 59999999999999999999999998654
No 28
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.5e-33 Score=287.89 Aligned_cols=232 Identities=22% Similarity=0.278 Sum_probs=129.3
Q ss_pred cccCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccc
Q 007778 109 RKKNKDSPGK-RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA 187 (590)
Q Consensus 109 ~~~~~~~~~~-~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~ 187 (590)
.+.+++.++. .|.||||+||..|+.++|++||+++.. ++.++..+.+|++.++..++..++..++.. ...+
T Consensus 47 ~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 118 (337)
T 4g8k_A 47 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------PVLRKKNGATPFILAAIAGSVKLLKLFLSK--GADV 118 (337)
T ss_dssp HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCT
T ss_pred CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc------hhhhccCCCchhHHHHhcccchhhHHhhhc--cchh
Confidence 3567777765 489999999999999999999998764 334444555555555555555555555443 3344
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCc---------cccCCCCCcHHHHHHHcCChhHHHHhhh-cCCchhhh
Q 007778 188 SIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLV---------MTTDLSCSTALHTAAAQGHIDVVNFLLE-IDSNLAKI 257 (590)
Q Consensus 188 ~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~---------~~~d~~g~TpLh~Aa~~g~~eiv~~LL~-~g~~~~~~ 257 (590)
+..|..|.||||+|+..|+.+++++|++.++++. ...+..|.||||+|+..|+.++|++||+ .|+++ +.
T Consensus 119 ~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~ 197 (337)
T 4g8k_A 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NA 197 (337)
T ss_dssp TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TC
T ss_pred hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-Cc
Confidence 4455555555555555555555555555544321 1123345555555555555555555553 24444 44
Q ss_pred hccCCchHHHHHHHcCC----HHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCH
Q 007778 258 ARNNGKTVLHSAARMGH----LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 333 (590)
Q Consensus 258 ~d~~g~tpLh~Aa~~g~----~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~Tp 333 (590)
.|..|.||+|.++..++ .+++++|+++|++++. +|.+|+||||+|+..|+.++++.|++.+...++.+|.+|+||
T Consensus 198 ~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~-~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~Tp 276 (337)
T 4g8k_A 198 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 276 (337)
T ss_dssp CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC-CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBH
T ss_pred cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCH
Confidence 45555555555444332 2345555555555544 255555555555555555555555554322235555555555
Q ss_pred HHHHHHcCCchhhhccc
Q 007778 334 LHIAIKKGRTQEAGAAH 350 (590)
Q Consensus 334 Lh~A~~~g~~~~~~~l~ 350 (590)
||+|++.|+.+.+..+.
T Consensus 277 L~~A~~~g~~~iv~~Ll 293 (337)
T 4g8k_A 277 LLLAVELKLKKIAELLC 293 (337)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 55555555555555443
No 29
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.4e-33 Score=272.66 Aligned_cols=196 Identities=18% Similarity=0.226 Sum_probs=162.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhc-CCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCcc---ccccCCCCC
Q 007778 119 RGDLQLHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE---TASIPARNG 194 (590)
Q Consensus 119 ~g~t~Lh~Aa~~G~~~~v~~Ll~~-~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~---~~~~~~~~g 194 (590)
.|+||||+|++.|+.++++.|++. +.+ ++.+|..|+||||+|+..|+.+++++|++.+... .....|.+|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g 75 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEG 75 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCC
Confidence 588999999999999999999987 432 6788899999999999999999999999973221 115567789
Q ss_pred CcHHHHHHHcCCHHHHHHHhccCCCCccccC-------------CCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccC
Q 007778 195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTD-------------LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261 (590)
Q Consensus 195 ~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d-------------~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~ 261 (590)
.||||+|+..|+.+++++|++.+++.. ..+ ..|.||||+|+..|+.+++++|+++|+++ +..|..
T Consensus 76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~ 153 (232)
T 2rfa_A 76 QTALHIAVINQNVNLVRALLARGASVS-ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSL 153 (232)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred cCHHHHHHHcCCHHHHHHHHhCCCCCC-cccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCC
Confidence 999999999999999999999988743 333 36889999999999999999999888887 677888
Q ss_pred CchHHHHHHHcCCHHHH----HHHHhcCCCCc-----cccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcc
Q 007778 262 GKTVLHSAARMGHLEVV----KALVSKDPSTG-----FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 322 (590)
Q Consensus 262 g~tpLh~Aa~~g~~eiv----~~Ll~~~~~~~-----~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~ 322 (590)
|.||||+|+..|+.+++ ++|+++|++.. ...|..|+||||+|+..|+.+++++|+++++..
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 99999999999988877 88888888764 346888999999999999999999998876543
No 30
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.3e-33 Score=274.95 Aligned_cols=232 Identities=18% Similarity=0.189 Sum_probs=195.9
Q ss_pred CCcccccchhhhhHHHHhhhhhHHHHHHHHhhcCCCCcccCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHh
Q 007778 72 STRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDL 151 (590)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~ 151 (590)
..+.++++.+...+..+..+.+..... ..+.+.+..|..|.||||+|+..|+.+++++|++.+.+
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~---------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------ 71 (241)
T 1k1a_A 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQ---------QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS------ 71 (241)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHHH---------HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHHHH---------hcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence 334467777777776655553322111 24567788899999999999999999999999998765
Q ss_pred hcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCc--cccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCC
Q 007778 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNL--ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCS 229 (590)
Q Consensus 152 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~ 229 (590)
++..|..|.||||+|+..|+.+++++|++.... ...+..+..|.||||+|+..|+.+++++|++.++++....+..|.
T Consensus 72 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~ 151 (241)
T 1k1a_A 72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR 151 (241)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCC
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCC
Confidence 567899999999999999999999999998432 256778889999999999999999999999999985544338899
Q ss_pred cHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCH
Q 007778 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 309 (590)
Q Consensus 230 TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~ 309 (590)
||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++. +|..|+||||+|+..|+.
T Consensus 152 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~ 229 (241)
T 1k1a_A 152 SPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL-KNCHNDTPLMVARSRRVI 229 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCTTTTCSSHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC-cCCCCCCHHHHHHhcCcH
Confidence 9999999999999999999999997 77899999999999999999999999999999886 599999999999999999
Q ss_pred HHHHHHhcCCC
Q 007778 310 DIVLELIRPDP 320 (590)
Q Consensus 310 ~iv~~Ll~~~~ 320 (590)
++++.|.+.++
T Consensus 230 ~i~~~l~~~~a 240 (241)
T 1k1a_A 230 DILRGKATRPA 240 (241)
T ss_dssp HHHTC------
T ss_pred HHHhhhccCCC
Confidence 99999988754
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=8.3e-34 Score=286.84 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=192.1
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC
Q 007778 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA 191 (590)
Q Consensus 112 ~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 191 (590)
+.+.+|..|.||||+|+..|+.+++++|++.+.+ ++.. +|.||||+|+..|+.+++++|+++ +.+++..+
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d 92 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL------KNLL--ENEFPLHQAATLEDTKIVKILLFS--GLDDSQFD 92 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG------GSCC--TTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCC--CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcC
Confidence 4678899999999999999999999999998754 3444 599999999999999999999998 66778889
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCC-CcHHHHHHHcCChhHHHHhhhcCCchhhhhcc-CCchHHHHH
Q 007778 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSC-STALHTAAAQGHIDVVNFLLEIDSNLAKIARN-NGKTVLHSA 269 (590)
Q Consensus 192 ~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g-~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~-~g~tpLh~A 269 (590)
..|.||||+|+..|+.+++++|++.+++ ++..|..| .||||+|+..|+.+++++|+++|++. .+. .|.||||+|
T Consensus 93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A 168 (285)
T 3kea_A 93 DKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHIT 168 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHH
Confidence 9999999999999999999999999988 56778888 79999999999999999999999876 233 899999999
Q ss_pred HHcCCHHHHHHHHhcCCCCccccCCCCCCH-HHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhc
Q 007778 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTA-LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGA 348 (590)
Q Consensus 270 a~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~-Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~ 348 (590)
+..|+.+++++|+++|++++. .|..|+|| ||+|+..|+.+++++|+++|+++ +.+|. .|+..|+.+.+..
T Consensus 169 ~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~-~~~~~-------~a~~~~~~~iv~~ 239 (285)
T 3kea_A 169 IKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-YSANL-------ENVLLDDAEIAKM 239 (285)
T ss_dssp HHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS-TTTTG-------GGGTTTCHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC-CCCCh-------hhhhcCCHHHHHH
Confidence 999999999999999999887 49999998 99999999999999999999886 76663 4566777777666
Q ss_pred cc
Q 007778 349 AH 350 (590)
Q Consensus 349 l~ 350 (590)
+.
T Consensus 240 Ll 241 (285)
T 3kea_A 240 II 241 (285)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 32
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-32 Score=262.73 Aligned_cols=194 Identities=24% Similarity=0.294 Sum_probs=175.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCc
Q 007778 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD 196 (590)
Q Consensus 117 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 196 (590)
+..+.||||.|+..|+.+.++.|+..++.+ ++..|..|.||||+|+..|+.+++++|++. +.+++..+..|.|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t 74 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ-----VDEVDTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDS 74 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence 356889999999999999999999887632 678899999999999999999999999997 6677888999999
Q ss_pred HHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcC-CchhhhhccCCchHHHHHHHcCC-
Q 007778 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID-SNLAKIARNNGKTVLHSAARMGH- 274 (590)
Q Consensus 197 ~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g-~~~~~~~d~~g~tpLh~Aa~~g~- 274 (590)
|||+|+..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.| .++ +..|..|.||||+|+..++
T Consensus 75 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~ 153 (201)
T 3hra_A 75 PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREG 153 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCC
T ss_pred HHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccc
Confidence 9999999999999999997766557788999999999999999999999999999 565 7889999999999999998
Q ss_pred ----HHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCC
Q 007778 275 ----LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 319 (590)
Q Consensus 275 ----~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~ 319 (590)
.+++++|+++|++++. +|..|+||||+|+..|+.+++++|+++|
T Consensus 154 ~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 154 NQLYQDIVKLLMENGADQSI-KDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp SHHHHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999999999999886 4999999999999999999999999875
No 33
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.2e-33 Score=271.60 Aligned_cols=199 Identities=28% Similarity=0.297 Sum_probs=184.6
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC
Q 007778 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA 191 (590)
Q Consensus 112 ~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 191 (590)
..+.++..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++ +.+.+..+
T Consensus 32 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~ 103 (231)
T 3aji_A 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP------VNDKDDAGWSPLHIAASAGXDEIVKALLVK--GAHVNAVN 103 (231)
T ss_dssp GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCC
T ss_pred hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC------CCCcCCCCCCHHHHHHHcCHHHHHHHHHHc--CCCCCCCC
Confidence 3567889999999999999999999999998764 678899999999999999999999999998 56778889
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHH
Q 007778 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271 (590)
Q Consensus 192 ~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~ 271 (590)
..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus 104 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 181 (231)
T 3aji_A 104 QNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACD 181 (231)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHH
Confidence 9999999999999999999999999988 5678899999999999999999999999999997 7789999999999999
Q ss_pred cCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCc
Q 007778 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321 (590)
Q Consensus 272 ~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~ 321 (590)
.|+.+++++|+++|++++. .|..|.||||+|+..++.+++++|.+++++
T Consensus 182 ~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 182 EERVEEAKFLVTQGASIYI-ENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp TTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 9999999999999999976 599999999999999999999999987653
No 34
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=7.7e-33 Score=290.69 Aligned_cols=251 Identities=20% Similarity=0.179 Sum_probs=207.7
Q ss_pred ccccccccccccCC-CCcccccchhhhhHHHHhhhhhHHHHHHHHhhcCCCCcccCCCCCCCCCChHHHHHHHcCCHHHH
Q 007778 58 KQQSFHGVTIDKQP-STRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRV 136 (590)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~G~~~~v 136 (590)
.++.+....++..+ ..+.++++.+...+..+..+.+.....+.+- ..+.+++..|..|.||||+|+..|+.++|
T Consensus 108 ~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll-----~~ga~vn~~d~~g~TpL~~A~~~g~~~iv 182 (373)
T 2fo1_E 108 ITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI-----AAGADVNAMDCDENTPLMLAVLARRRRLV 182 (373)
T ss_dssp CCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHH-----HTCCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH-----hcCCCCcCCCCCCCCHHHHHHHcChHHHH
Confidence 34444444444454 3344778887777766655544322111111 34677889999999999999999999999
Q ss_pred HHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCC-ccccccCCCCCCcHHHHHHHcC---CHHHHHH
Q 007778 137 MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN-LETASIPARNGYDSFHVAAKQG---HLEVLKE 212 (590)
Q Consensus 137 ~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~-~~~~~~~~~~g~t~Lh~Aa~~g---~~~iv~~ 212 (590)
++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++.. ....+..+.+|.||||+|+..+ +.+++++
T Consensus 183 ~~Ll~~ga~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~ 256 (373)
T 2fo1_E 183 AYLMKAGAD------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256 (373)
T ss_dssp HHHHHTTCC------SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHH
T ss_pred HHHHHCCCC------CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHH
Confidence 999998875 57889999999999999999999999998721 1567888999999999999998 8999999
Q ss_pred HhccCCCCcc-------ccCCCCCcHHHHHHHcCChhHHHHhhhcC-CchhhhhccCCchHHHHHHHcCCHHHHHHHHhc
Q 007778 213 LLGEFPNLVM-------TTDLSCSTALHTAAAQGHIDVVNFLLEID-SNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284 (590)
Q Consensus 213 LL~~~~~~~~-------~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g-~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~ 284 (590)
|++.+.++.. ..|..|.||||+|+..|+.++|++|++.+ +++ +..|..|.||||+|+..|+.++|++|+++
T Consensus 257 Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 335 (373)
T 2fo1_E 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335 (373)
T ss_dssp HHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999988542 35779999999999999999999999887 666 78899999999999999999999999999
Q ss_pred CCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCc
Q 007778 285 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321 (590)
Q Consensus 285 ~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~ 321 (590)
|++++. +|..|+||||+|+.+|+.+++++|++++++
T Consensus 336 gad~~~-~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 336 GASVEA-VDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp TCCSSC-CCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred CCCccC-CCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 999987 599999999999999999999999998764
No 35
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.1e-32 Score=267.74 Aligned_cols=226 Identities=22% Similarity=0.296 Sum_probs=197.4
Q ss_pred cCCCCcccccchhhhhHHHHhhhhhHHHHHHHHhhcCCCCcccCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhh
Q 007778 69 KQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEA 148 (590)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~ 148 (590)
.++..+.++++.+...+..+..+.+ + +.+.+.+..+..|.||||+|+..|+.+++++|++.+.+
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~L-------l------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--- 69 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHML-------V------QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL--- 69 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHH-------H------HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHH-------H------HcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC---
Confidence 3444455778888877765544322 2 23567788899999999999999999999999998764
Q ss_pred hHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCC
Q 007778 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSC 228 (590)
Q Consensus 149 ~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g 228 (590)
++..+..|.||||+|+..|+.+++++|++. +....+..+..|.||||+|+..|+.+++++|++.+++ .+..|..|
T Consensus 70 ---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g 144 (237)
T 3b7b_A 70 ---VDPKDAEGSTCLHLAAKKGHYEVVQYLLSN-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEE 144 (237)
T ss_dssp ---CCCCCTTSCCHHHHHHHTTCHHHHHHHHTT-TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred ---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCC
Confidence 577889999999999999999999999997 3356778889999999999999999999999999988 56788999
Q ss_pred CcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCC
Q 007778 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 308 (590)
Q Consensus 229 ~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~ 308 (590)
.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++. +|.+|+||||+|+.+++
T Consensus 145 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 145 NICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL-KNKEGETPLQCASLNSQ 222 (237)
T ss_dssp CCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHSCTTCH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc-cCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999997 77899999999999999999999999999999986 49999999999999999
Q ss_pred HHHHHHHhc
Q 007778 309 EDIVLELIR 317 (590)
Q Consensus 309 ~~iv~~Ll~ 317 (590)
.+.+..+++
T Consensus 223 ~~~~~~l~~ 231 (237)
T 3b7b_A 223 VWSALQMSK 231 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 977766654
No 36
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.8e-32 Score=267.51 Aligned_cols=192 Identities=24% Similarity=0.275 Sum_probs=173.3
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCc----cccCCCCCcHHH
Q 007778 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLV----MTTDLSCSTALH 233 (590)
Q Consensus 158 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~----~~~d~~g~TpLh 233 (590)
.|+||||+|+..|+.+++++|++. .+.+++..|.+|.||||+|+..|+.+++++|++.+++.. ...|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999996 356788889999999999999999999999999998753 456779999999
Q ss_pred HHHHcCChhHHHHhhhcCCchhhhhcc-------------CCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHH
Q 007778 234 TAAAQGHIDVVNFLLEIDSNLAKIARN-------------NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300 (590)
Q Consensus 234 ~Aa~~g~~eiv~~LL~~g~~~~~~~d~-------------~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~L 300 (590)
+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++++|+++|++++. +|.+|+|||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t~L 158 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA-QDSLGNTVL 158 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHH
Confidence 999999999999999999987 44443 799999999999999999999999999987 499999999
Q ss_pred HHHHhCCCHHHH----HHHhcCCCccc-----ccccCCCCCHHHHHHHcCCchhhhccccc
Q 007778 301 HMAVKGQNEDIV----LELIRPDPSVL-----KLEDNKGNTALHIAIKKGRTQEAGAAHSK 352 (590)
Q Consensus 301 h~A~~~g~~~iv----~~Ll~~~~~~~-----~~~d~~G~TpLh~A~~~g~~~~~~~l~~~ 352 (590)
|+|+..|+.+++ ++|++.+++.. +.+|..|+||||+|+..|+.+.+..+...
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 999999999988 99999988653 68899999999999999999988777543
No 37
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.3e-31 Score=276.99 Aligned_cols=273 Identities=21% Similarity=0.169 Sum_probs=225.7
Q ss_pred CCCCccccccc--cccccccCCCC-cccccchhhhhHHHHhhhhhHHHHHHHHhhcCCCCcccCCCCCCCCCChHHHHHH
Q 007778 52 ALGPMEKQQSF--HGVTIDKQPST-RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAA 128 (590)
Q Consensus 52 ~~~~~e~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~t~Lh~Aa 128 (590)
..|+.+.++.+ .+++++.++.. +.++++.+...++.+..+. ++ +.+.+++.++..+.++++.++
T Consensus 34 ~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~-------Ll------~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 34 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL-------LL------RHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH-------HH------HTTCCTTCCCTTCCCHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHH-------HH------HcCCchhhhccCCCchhHHHH
Confidence 44667777766 34556555544 3478888888876555442 22 346778889999999999999
Q ss_pred HcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccc--------cccCCCCCCcHHHH
Q 007778 129 RAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET--------ASIPARNGYDSFHV 200 (590)
Q Consensus 129 ~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~--------~~~~~~~g~t~Lh~ 200 (590)
..+....+..++..+.+ ++..|..|.||||+|+..|+.+++++|++.+.... ....+..|.||||+
T Consensus 101 ~~~~~~~~~~~~~~~~~------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~ 174 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGAD------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 174 (337)
T ss_dssp HHTCHHHHHHHHTTTCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHH
T ss_pred hcccchhhHHhhhccch------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHH
Confidence 99999999999988764 67889999999999999999999999999742221 12345679999999
Q ss_pred HHHcCCHHHHHHHhcc-CCCCccccCCCCCcHHHHHHHcCC----hhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCH
Q 007778 201 AAKQGHLEVLKELLGE-FPNLVMTTDLSCSTALHTAAAQGH----IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 275 (590)
Q Consensus 201 Aa~~g~~~iv~~LL~~-~~~~~~~~d~~g~TpLh~Aa~~g~----~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~ 275 (590)
|+..|+.+++++||++ +.+ ++..|..|.||||.++..++ .+++++|+++|+++ +.+|..|.||||+|+..|+.
T Consensus 175 A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~ 252 (337)
T 4g8k_A 175 AAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHL 252 (337)
T ss_dssp HHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhh
Confidence 9999999999999975 555 77889999999999887654 35889999999998 77899999999999999999
Q ss_pred HHHHHHHhc-CCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhccccc
Q 007778 276 EVVKALVSK-DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHSK 352 (590)
Q Consensus 276 eiv~~Ll~~-~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~~~ 352 (590)
++++.|++. +.+++. +|.+|+||||+|++.|+.++|++|+++|+++ | +.||||+|+++|+.+.+..|...
T Consensus 253 ~~v~~Ll~~~~~~vn~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~-n-----~~~~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 253 GLVQRLLEQEHIEIND-TDSDGKTALLLAVELKLKKIAELLCKRGAST-D-----CGDLVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp HHHHHHHTSTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS-T-----TCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccC-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C-----CCCHHHHHHHcCCHHHHHHHHHC
Confidence 999999986 667765 5999999999999999999999999999865 3 45799999999999999888544
No 38
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=281.18 Aligned_cols=192 Identities=27% Similarity=0.338 Sum_probs=148.4
Q ss_pred cCCCCCCCCCChHHHHHHHcCCHH-HHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccccc
Q 007778 111 KNKDSPGKRGDLQLHLAARAGNLS-RVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI 189 (590)
Q Consensus 111 ~~~~~~~~~g~t~Lh~Aa~~G~~~-~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~ 189 (590)
...+..+..|.||||.|+..++.+ +++.|++.|.+ ++.+|.+|+||||+|+..|+.++|++|++. +.+...
T Consensus 43 ~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--~a~~~~ 114 (269)
T 4b93_B 43 DTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG------VNVTSQDGSSPLHVAALHGRADLIPLLLKH--GANAGA 114 (269)
T ss_dssp --------------------------------CCCC------TTCCCTTSCCHHHHHHHTTCTTHHHHHHHT--TCCTTC
T ss_pred ccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHhc--CCCcCc
Confidence 345677889999999999988765 78888888765 688899999999999999999999999997 567788
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHH
Q 007778 190 PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 269 (590)
Q Consensus 190 ~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~A 269 (590)
.+.+|.||+|.|+..++.++++.|++.+++ ++..|..|+||||+|+..|+.++|++|+++|+++ +..+..|.||||+|
T Consensus 115 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A 192 (269)
T 4b93_B 115 RNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEA 192 (269)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHH
T ss_pred cCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHH
Confidence 899999999999999999999999999988 6678999999999999999999999999999998 78899999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHH
Q 007778 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315 (590)
Q Consensus 270 a~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~L 315 (590)
+..|+.++|++|+++|++++. +|.+|+||||+|+++++ ++++|
T Consensus 193 ~~~g~~~~v~~Ll~~Gad~~~-~d~~G~TpL~~A~~~~~--i~~lL 235 (269)
T 4b93_B 193 VIEKHVFVVELLLLHGASVQV-LNKRQRTAVDCAEQNSK--IMELL 235 (269)
T ss_dssp HHTTCHHHHHHHHHTTCCSCC-CCTTSCCSGGGSCTTCH--HHHHT
T ss_pred HHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHhCCc--HHHHH
Confidence 999999999999999999987 59999999999998775 44443
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.5e-32 Score=277.54 Aligned_cols=209 Identities=19% Similarity=0.165 Sum_probs=185.4
Q ss_pred HHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCH
Q 007778 128 ARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL 207 (590)
Q Consensus 128 a~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~ 207 (590)
++..+.+.+..+|..+. ++.+|.+|.||||+|+..|+.+++++|++. +.+++.. +|.||||+|+..|+.
T Consensus 7 i~~~~~~~v~~lL~~~~-------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~--~g~t~L~~A~~~g~~ 75 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKD-------TFKADVHGHSASYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDT 75 (285)
T ss_dssp GGGCCHHHHHHHHHSTT-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCC--TTCCHHHHHTTSSSC
T ss_pred HHhcCHHHHHHHHHhCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCC--CCCCHHHHHHHcCCH
Confidence 34556666667776543 578899999999999999999999999998 4444444 599999999999999
Q ss_pred HHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCC-chHHHHHHHcCCHHHHHHHHhcCC
Q 007778 208 EVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNG-KTVLHSAARMGHLEVVKALVSKDP 286 (590)
Q Consensus 208 ~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g-~tpLh~Aa~~g~~eiv~~Ll~~~~ 286 (590)
+++++|++.+++ ++..|..|+||||+|+..|+.+++++|+++|+++ +..+..| .||||+|+..|+.+++++|+++|+
T Consensus 76 ~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 76 KIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153 (285)
T ss_dssp HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 999999999998 5678999999999999999999999999999998 7788888 799999999999999999999999
Q ss_pred CCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCH-HHHHHHcCCchhhhccccc
Q 007778 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA-LHIAIKKGRTQEAGAAHSK 352 (590)
Q Consensus 287 ~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~Tp-Lh~A~~~g~~~~~~~l~~~ 352 (590)
+... ...|+||||+|+..|+.+++++|+++|+++ +.+|..|+|| ||+|+..|+.+.+..+...
T Consensus 154 ~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 154 STFD--LAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp TTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred cccc--ccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 8742 238999999999999999999999998876 8999999998 9999999999998888544
No 40
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.5e-33 Score=280.99 Aligned_cols=221 Identities=16% Similarity=0.192 Sum_probs=170.9
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchh--hhHhhcccCCCCCcHHHHHHHh---CCHHHHHHHHhcCCc--
Q 007778 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANE--AKDLLSKKNQEGETPLYVAAES---GHALIVEEMLQHMNL-- 184 (590)
Q Consensus 112 ~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~--~~~~l~~~n~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~-- 184 (590)
..+..|..|.||||.||+.|+.++|+.|++.+.... ........|..|.||||+|+.. |+.+++++|++.+..
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~ 84 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD 84 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence 345678999999999999999999999997532110 0001114588999999999987 999999999997311
Q ss_pred -------cccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCC--------------CCCcHHHHHHHcCChhH
Q 007778 185 -------ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDL--------------SCSTALHTAAAQGHIDV 243 (590)
Q Consensus 185 -------~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~--------------~g~TpLh~Aa~~g~~ei 243 (590)
......|..|.||||+|+..|+.+++++|++.+++ ++..+. .|.||||+|+..|+.++
T Consensus 85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 11122567899999999999999999999999988 445554 79999999999999999
Q ss_pred HHHhhh---cCCchhhhhccCCchHHHHHHHcCC---------HHHHHHHHhcCCCCcc------ccCCCCCCHHHHHHh
Q 007778 244 VNFLLE---IDSNLAKIARNNGKTVLHSAARMGH---------LEVVKALVSKDPSTGF------RTDKKGQTALHMAVK 305 (590)
Q Consensus 244 v~~LL~---~g~~~~~~~d~~g~tpLh~Aa~~g~---------~eiv~~Ll~~~~~~~~------~~d~~G~T~Lh~A~~ 305 (590)
+++|++ .|+++ +..|.+|+||||+|+..|+ .+++++|+++|++++. .+|..|+||||+|+.
T Consensus 164 v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 164 VKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242 (273)
T ss_dssp HHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHH
Confidence 999999 89997 7789999999999999998 8999999999988863 469999999999999
Q ss_pred CCCHHHHHHHhcCCCcccccccCCCCCHH
Q 007778 306 GQNEDIVLELIRPDPSVLKLEDNKGNTAL 334 (590)
Q Consensus 306 ~g~~~iv~~Ll~~~~~~~~~~d~~G~TpL 334 (590)
.|+.+++++|+++|+.........+.+|-
T Consensus 243 ~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 243 SGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp TTCHHHHHHHHHHHTC-------------
T ss_pred hChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 99999999999998855466666666554
No 41
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.98 E-value=1.5e-31 Score=259.90 Aligned_cols=189 Identities=25% Similarity=0.251 Sum_probs=171.7
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccC--CCCccccCCCCCcHHHHHH
Q 007778 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAA 236 (590)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~--~~~~~~~d~~g~TpLh~Aa 236 (590)
|+||||+|+..|+.+++++|++.. .......+.+|.||||+|+..|+.+++++|++.+ ++.....|..|+||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 789999999999999999999983 4445558899999999999999999999999999 6644447899999999999
Q ss_pred HcCChhHHHHhhhcC--CchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHH
Q 007778 237 AQGHIDVVNFLLEID--SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 314 (590)
Q Consensus 237 ~~g~~eiv~~LL~~g--~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~ 314 (590)
..|+.+++++|+++| +++ +..+..|.||||+|+..|+.+++++|+++|++++. .|..|+||||+|+..|+.+++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999998 776 67788999999999999999999999999999886 49999999999999999999999
Q ss_pred HhcCCCcccccccCCCCCHHHHHHHcCCchhhhccc
Q 007778 315 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAH 350 (590)
Q Consensus 315 Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~ 350 (590)
|++.+...++.+|..|+||||+|+..|+.+.+..+.
T Consensus 159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999995555999999999999999999999888775
No 42
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.98 E-value=4.1e-31 Score=258.08 Aligned_cols=225 Identities=21% Similarity=0.246 Sum_probs=191.8
Q ss_pred cccccchhhhhHHHHhhhhhHHHHHHHHhhcCCCCcccCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhc
Q 007778 74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS 153 (590)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~ 153 (590)
..+++..+...+..+..+ ..++ .+.+.+.++..|.||||+|+..|+.+++++|++.+... ..
T Consensus 9 ~~~~l~~A~~~g~~~~~~-------~Ll~------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----~~ 70 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCR-------ELVE------AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV-----DQ 70 (240)
T ss_dssp GGCCHHHHHHTTCHHHHH-------HHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----TC
T ss_pred cchHHHHHHHcCChHHHH-------HHHH------cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc-----hh
Confidence 335555566555444433 2222 34667788999999999999999999999999988742 33
Q ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHH
Q 007778 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALH 233 (590)
Q Consensus 154 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh 233 (590)
..+..|.||||+|+..|+.+++++|++. +...+..+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||
T Consensus 71 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~ 147 (240)
T 3eu9_A 71 LGGDLNSTPLHWATRQGHLSMVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLM 147 (240)
T ss_dssp CBTTTTBCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred hcCCcCCChhHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHH
Confidence 4556699999999999999999999997 567788899999999999999999999999999988 5678899999999
Q ss_pred HHHHcCC-hhHHHHhhhcCCchhhhhcc-CCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHH
Q 007778 234 TAAAQGH-IDVVNFLLEIDSNLAKIARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311 (590)
Q Consensus 234 ~Aa~~g~-~eiv~~LL~~g~~~~~~~d~-~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~i 311 (590)
+|+..++ .+++++|++.|+++ +..+. .|.||||+|+..|+.+++++|+++|++++. .|..|+||||+|+..|+.++
T Consensus 148 ~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~ 225 (240)
T 3eu9_A 148 WAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-QNIKGESALDLAKQRKNVWM 225 (240)
T ss_dssp HHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-BCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHH
Confidence 9997776 89999999999998 44554 899999999999999999999999999886 59999999999999999999
Q ss_pred HHHHhcCCCc
Q 007778 312 VLELIRPDPS 321 (590)
Q Consensus 312 v~~Ll~~~~~ 321 (590)
+++|++.++.
T Consensus 226 v~~L~~~~~~ 235 (240)
T 3eu9_A 226 INHLQEARQA 235 (240)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHhhhc
Confidence 9999998764
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=7.7e-33 Score=271.14 Aligned_cols=196 Identities=24% Similarity=0.282 Sum_probs=173.5
Q ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHhcCCc--cccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcH
Q 007778 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNL--ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231 (590)
Q Consensus 154 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~Tp 231 (590)
.+|.+|.||||+|+..|+.+++++|++.... ..++..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence 5688999999999999999999999987432 25788899999999999999999999999999988 56788999999
Q ss_pred HHHHHHcCChhHHHHhhhcCCch-----hhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCC-CCCCHHHHHHh
Q 007778 232 LHTAAAQGHIDVVNFLLEIDSNL-----AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK-KGQTALHMAVK 305 (590)
Q Consensus 232 Lh~Aa~~g~~eiv~~LL~~g~~~-----~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~-~G~T~Lh~A~~ 305 (590)
||+|+..|+.+++++|++.+++. .+..+..|.||||+|+..|+.+++++|+++|++++.. |. .|+||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHH
Confidence 99999999999999999998642 3667888999999999999999999999999999875 65 99999999999
Q ss_pred CCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhccccc
Q 007778 306 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHSK 352 (590)
Q Consensus 306 ~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~~~ 352 (590)
.|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+.+..+...
T Consensus 161 ~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 206 (236)
T 1ikn_D 161 LQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206 (236)
T ss_dssp TTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred cCCHHHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHHc
Confidence 99999999999999887 89999999999999999999988777543
No 44
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=3.3e-32 Score=270.04 Aligned_cols=193 Identities=21% Similarity=0.219 Sum_probs=164.1
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHhcCCchhhhHhhcc----cCCCCCcHHHHHHHh---CCHHHHHHHHhcCCcccc
Q 007778 119 RGDLQLHLAARAGNLS----RVMEILQSCDANEAKDLLSK----KNQEGETPLYVAAES---GHALIVEEMLQHMNLETA 187 (590)
Q Consensus 119 ~g~t~Lh~Aa~~G~~~----~v~~Ll~~~~~~~~~~~l~~----~n~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~ 187 (590)
.|.||||.||..|+.+ ++++|++.+.+ ++. .|..|.||||+|+.. |+.+++++|++.+ ...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~------i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~ 72 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY------LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDS 72 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC------TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC------cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--Ccc
Confidence 4889999999999998 45566656654 455 799999999999999 9999999999973 222
Q ss_pred c-----------cCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCC-------------CCcHHHHHHHcCChhH
Q 007778 188 S-----------IPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLS-------------CSTALHTAAAQGHIDV 243 (590)
Q Consensus 188 ~-----------~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~-------------g~TpLh~Aa~~g~~ei 243 (590)
. ..|..|.||||+|+..|+.+++++|++.+++ ++..|.. |.||||+|+..|+.++
T Consensus 73 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~ 151 (256)
T 2etb_A 73 GNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151 (256)
T ss_dssp TCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred cchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 2 2346799999999999999999999999988 4455554 9999999999999999
Q ss_pred HHHhhh---cCCchhhhhccCCchHHHHHHH--cCCHH-------HHHHHHhcCCCCc------cccCCCCCCHHHHHHh
Q 007778 244 VNFLLE---IDSNLAKIARNNGKTVLHSAAR--MGHLE-------VVKALVSKDPSTG------FRTDKKGQTALHMAVK 305 (590)
Q Consensus 244 v~~LL~---~g~~~~~~~d~~g~tpLh~Aa~--~g~~e-------iv~~Ll~~~~~~~------~~~d~~G~T~Lh~A~~ 305 (590)
+++|++ .|+++ +..|.+|+||||+|+. .++.+ ++++|+++|+++. ..+|..|+||||+|+.
T Consensus 152 v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~ 230 (256)
T 2etb_A 152 VTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230 (256)
T ss_dssp HHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHH
Confidence 999999 89987 7789999999999998 78888 9999999998882 3469999999999999
Q ss_pred CCCHHHHHHHhcCCCc
Q 007778 306 GQNEDIVLELIRPDPS 321 (590)
Q Consensus 306 ~g~~~iv~~Ll~~~~~ 321 (590)
.|+.+++++|++++..
T Consensus 231 ~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 231 EGKIEIFRHILQREFS 246 (256)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhCCCC
Confidence 9999999999988754
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.8e-31 Score=251.99 Aligned_cols=191 Identities=24% Similarity=0.299 Sum_probs=172.6
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHH
Q 007778 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA 235 (590)
Q Consensus 156 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~A 235 (590)
+..+.||||.|+..|+.++++.|+.. .+.+++..+.+|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A 79 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYA 79 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence 45789999999999999999999997 3447788899999999999999999999999999988 567889999999999
Q ss_pred HHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcC-CCCccccCCCCCCHHHHHHhCCC-----H
Q 007778 236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD-PSTGFRTDKKGQTALHMAVKGQN-----E 309 (590)
Q Consensus 236 a~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~-~~~~~~~d~~G~T~Lh~A~~~g~-----~ 309 (590)
+..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++++ .+++. .|..|+||||+|+..++ .
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC-CCTTSCCHHHHHHHSSCCSHHHH
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCCCHHHHHHHhccchhhHH
Confidence 99999999999996544334778999999999999999999999999999 66654 59999999999999998 9
Q ss_pred HHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhccc
Q 007778 310 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAH 350 (590)
Q Consensus 310 ~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~ 350 (590)
+++++|++.|+++ +.+|..|+||||+|+..|+.+.+..+.
T Consensus 159 ~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 159 DIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 9999999999887 899999999999999999998877664
No 46
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=3.4e-32 Score=280.55 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=152.4
Q ss_pred HHHHHHcCCHHHHHHHHhcCCchhhhHhhcc-cCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHH
Q 007778 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSK-KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAA 202 (590)
Q Consensus 124 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~-~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa 202 (590)
+|.|+..+..++++.|++.+.+ ++. +|..|.||||+|+..|+.++|++||++ +.+++.+|.+|.||||+|+
T Consensus 101 ~~~a~~~~~~~~~~~l~~~g~d------vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~ 172 (327)
T 1sw6_A 101 QHVSFDSLLQEVNDAFPNTQLN------LNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAV 172 (327)
T ss_dssp ---CHHHHHHHHHHHCTTSCCC------SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHH
T ss_pred hHHHHHhhHHHHHHHHHhcCCC------cccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH
Confidence 3555555555555555554433 456 788999999999999999999999997 5777888899999999999
Q ss_pred HcCC---HHHHHHHhccCCCCccccCCCCCcHHHHHHH----cCChhHHHHhhhc--------------------CCchh
Q 007778 203 KQGH---LEVLKELLGEFPNLVMTTDLSCSTALHTAAA----QGHIDVVNFLLEI--------------------DSNLA 255 (590)
Q Consensus 203 ~~g~---~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~----~g~~eiv~~LL~~--------------------g~~~~ 255 (590)
..|+ .++++.|++.+....+..|..|+||||+|+. .|+.+++++|++. |+++
T Consensus 173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~- 251 (327)
T 1sw6_A 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP- 251 (327)
T ss_dssp HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-
Confidence 9988 6777777777644477888999999999998 8899999999887 5665
Q ss_pred hhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHH
Q 007778 256 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 335 (590)
Q Consensus 256 ~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh 335 (590)
+..+..|.||||.|+. +++|++++ ++. +|.+|+||||+|+..|+.++|++|+++|+++ +.+|.+|+||||
T Consensus 252 ~~~~~~g~t~L~~a~~------~~~Ll~~~--~n~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~G~TpL~ 321 (327)
T 1sw6_A 252 NDKNGERKDSILENLD------LKWIIANM--LNA-QDSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVD 321 (327)
T ss_dssp --------CHHHHHCS------HHHHHHHT--TTC-CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT-TCCCTTSCCGGG
T ss_pred ccccccCCChhHHHHH------HHHHHHhC--CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence 6678889999999885 88888884 443 5899999999999999999999999999987 999999999999
Q ss_pred HHHHcC
Q 007778 336 IAIKKG 341 (590)
Q Consensus 336 ~A~~~g 341 (590)
+|+++|
T Consensus 322 ~A~~~g 327 (327)
T 1sw6_A 322 FGAGLE 327 (327)
T ss_dssp GTCC--
T ss_pred HHHhcC
Confidence 998764
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.5e-30 Score=241.99 Aligned_cols=157 Identities=33% Similarity=0.464 Sum_probs=139.3
Q ss_pred cHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCC
Q 007778 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH 240 (590)
Q Consensus 161 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~ 240 (590)
++|+.||+.|+.++|+.||+. +.+++.+|.+|.||||+|+..++.++++.|++.+.+ ++.+|..|+||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCC
Confidence 479999999999999999987 677888899999999999999999999999999888 56788899999999999999
Q ss_pred hhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCC
Q 007778 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320 (590)
Q Consensus 241 ~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~ 320 (590)
.+++++|+++|+++ +.+|.+|+||||+|+..|+.++|++|+++|++++. +|.+|+||||+|+.+|+.+++++|+++|+
T Consensus 83 ~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 83 KEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT-SDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred HHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 99999999999997 77899999999999999999999999999999876 48999999999999999999999999998
Q ss_pred cc
Q 007778 321 SV 322 (590)
Q Consensus 321 ~~ 322 (590)
++
T Consensus 161 ~i 162 (169)
T 4gpm_A 161 WL 162 (169)
T ss_dssp --
T ss_pred Cc
Confidence 76
No 48
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.4e-31 Score=266.03 Aligned_cols=202 Identities=18% Similarity=0.156 Sum_probs=166.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHh----cCCchhhhHhhcccCCCCCcHHHHHH---HhCCHHHHHHHHhcCCc-----
Q 007778 117 GKRGDLQLHLAARAGNLSRVMEILQ----SCDANEAKDLLSKKNQEGETPLYVAA---ESGHALIVEEMLQHMNL----- 184 (590)
Q Consensus 117 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~----~~~~~~~~~~l~~~n~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~----- 184 (590)
+..|.|+||.||+.|+.+.++.|++ .+...... -...+..|.||||+|+ ..|+.+++++|++.+..
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~--~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE--EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG--GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh--hhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 5678999999999999997666665 55432111 1123477999999999 77999999999997311
Q ss_pred ----cccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccC--------------CCCCcHHHHHHHcCChhHHHH
Q 007778 185 ----ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTD--------------LSCSTALHTAAAQGHIDVVNF 246 (590)
Q Consensus 185 ----~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d--------------~~g~TpLh~Aa~~g~~eiv~~ 246 (590)
......|..|.||||+|+..|+.+++++|++.+++ ++..| ..|+||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 22344455899999999999999999999999988 44555 579999999999999999999
Q ss_pred hhh---cCCchhhhhccCCchHHHHHHHcCC---------HHHHHHHHhcCCCCc------cccCCCCCCHHHHHHhCCC
Q 007778 247 LLE---IDSNLAKIARNNGKTVLHSAARMGH---------LEVVKALVSKDPSTG------FRTDKKGQTALHMAVKGQN 308 (590)
Q Consensus 247 LL~---~g~~~~~~~d~~g~tpLh~Aa~~g~---------~eiv~~Ll~~~~~~~------~~~d~~G~T~Lh~A~~~g~ 308 (590)
|++ .|+++ +..|..|+||||+|+..|+ .+++++|+++|++++ ...|..|+||||+|+..|+
T Consensus 159 Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 159 LTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 999 88987 7789999999999998887 799999999998873 3468999999999999999
Q ss_pred HHHHHHHhcCCCcc
Q 007778 309 EDIVLELIRPDPSV 322 (590)
Q Consensus 309 ~~iv~~Ll~~~~~~ 322 (590)
.+++++|+++|+..
T Consensus 238 ~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 238 IGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999987543
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.7e-30 Score=240.22 Aligned_cols=159 Identities=31% Similarity=0.435 Sum_probs=145.8
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHH
Q 007778 122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA 201 (590)
Q Consensus 122 t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A 201 (590)
++|+.||+.|+.++|+.||+.|.+ ++.+|.+|+||||+|+..|+.++++.|++. +.+++.+|.+|.||||+|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A 77 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD------VNASDSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHA 77 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHH
Confidence 579999999999999999999875 688999999999999999999999999997 677888999999999999
Q ss_pred HHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHH
Q 007778 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKAL 281 (590)
Q Consensus 202 a~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~L 281 (590)
+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.++|++|+++|+++ +..|.+|+||||+|+..|+.+++++|
T Consensus 78 ~~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~L 155 (169)
T 4gpm_A 78 AENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLL 155 (169)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999998 6788999999999999999999999999999998 78899999999999999999999999
Q ss_pred HhcCCCCcc
Q 007778 282 VSKDPSTGF 290 (590)
Q Consensus 282 l~~~~~~~~ 290 (590)
+++|+++..
T Consensus 156 l~~GA~ie~ 164 (169)
T 4gpm_A 156 EKQGGWLEH 164 (169)
T ss_dssp HTC------
T ss_pred HHCCCCcCC
Confidence 999998754
No 50
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=6.9e-31 Score=266.24 Aligned_cols=236 Identities=21% Similarity=0.250 Sum_probs=195.1
Q ss_pred HHHHcCCHHHHHHHHhcCCchhhh---HhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHH
Q 007778 126 LAARAGNLSRVMEILQSCDANEAK---DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAA 202 (590)
Q Consensus 126 ~Aa~~G~~~~v~~Ll~~~~~~~~~---~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa 202 (590)
.++..|+.+.++.++......... ......+..|.||||.|+..|+.++|++|++. +.+++..+.+|.||||+|+
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 81 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQAC 81 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHH
Confidence 467788888888888765432111 11122345678999999999999999999998 5677888999999999999
Q ss_pred HcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHH
Q 007778 203 KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 282 (590)
Q Consensus 203 ~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll 282 (590)
..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++.++
T Consensus 82 ~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll 159 (299)
T 1s70_B 82 IDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEV 159 (299)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence 99999999999999988 5678899999999999999999999999999997 778999999999999999999998877
Q ss_pred hc-CCC-------------------------CccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHH
Q 007778 283 SK-DPS-------------------------TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336 (590)
Q Consensus 283 ~~-~~~-------------------------~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~ 336 (590)
.. +.+ .....+..|.||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~ 238 (299)
T 1s70_B 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHA 238 (299)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHH
T ss_pred hhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence 54 222 22335678999999999999999999999999887 9999999999999
Q ss_pred HHHcCCchhhhccccccCCCCccHHHHHHHhH
Q 007778 337 AIKKGRTQEAGAAHSKDHGKPPSATKQLKQTV 368 (590)
Q Consensus 337 A~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~ 368 (590)
|+..|+.+.+..+... +.+++..+..++++
T Consensus 239 A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t~ 268 (299)
T 1s70_B 239 AAHWGKEEACRILVEN--LCDMEAVNKVGQTA 268 (299)
T ss_dssp HHHTTCHHHHHHHHHT--TCCTTCCCTTSCCT
T ss_pred HHhcCCHHHHHHHHHc--CCCCCCcCCCCCCH
Confidence 9999999988877543 44444434444443
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=3.7e-31 Score=262.45 Aligned_cols=189 Identities=20% Similarity=0.211 Sum_probs=165.8
Q ss_pred CCCcHHHHHHHhCCHH----HHHHHHhcCCcccccc----CCCCCCcHHHHHHHc---CCHHHHHHHhccCCCCcc----
Q 007778 158 EGETPLYVAAESGHAL----IVEEMLQHMNLETASI----PARNGYDSFHVAAKQ---GHLEVLKELLGEFPNLVM---- 222 (590)
Q Consensus 158 ~g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~~~----~~~~g~t~Lh~Aa~~---g~~~iv~~LL~~~~~~~~---- 222 (590)
.|+||||.|+..|+.+ ++++|++. +.+++. .|.+|.||||+|+.. |+.+++++|++.+++...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 3789999999999998 55666666 456666 789999999999999 999999999998766431
Q ss_pred ------ccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccC-------------CchHHHHHHHcCCHHHHHHHHh
Q 007778 223 ------TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-------------GKTVLHSAARMGHLEVVKALVS 283 (590)
Q Consensus 223 ------~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~-------------g~tpLh~Aa~~g~~eiv~~Ll~ 283 (590)
..|..|.||||+|+..|+.+++++|+++|+++ +..+.. |.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 23467999999999999999999999999997 556665 9999999999999999999999
Q ss_pred ---cCCCCccccCCCCCCHHHHHHh--CCCHH-------HHHHHhcCCCccc------ccccCCCCCHHHHHHHcCCchh
Q 007778 284 ---KDPSTGFRTDKKGQTALHMAVK--GQNED-------IVLELIRPDPSVL------KLEDNKGNTALHIAIKKGRTQE 345 (590)
Q Consensus 284 ---~~~~~~~~~d~~G~T~Lh~A~~--~g~~~-------iv~~Ll~~~~~~~------~~~d~~G~TpLh~A~~~g~~~~ 345 (590)
+|++++. +|.+|+||||+|+. .++.+ ++++|++.|+++. +.+|..|+||||+|+..|+.+.
T Consensus 158 ~~~~ga~~n~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 236 (256)
T 2etb_A 158 NPHQPASLEA-TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236 (256)
T ss_dssp CSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred ccccCCCcCc-cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence 8999886 49999999999999 88988 9999999987653 7899999999999999999988
Q ss_pred hhccc
Q 007778 346 AGAAH 350 (590)
Q Consensus 346 ~~~l~ 350 (590)
+..+.
T Consensus 237 v~~Ll 241 (256)
T 2etb_A 237 FRHIL 241 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=2.1e-31 Score=266.97 Aligned_cols=201 Identities=19% Similarity=0.241 Sum_probs=169.2
Q ss_pred hcccCCCCCcHHHHHHHhCCHHHHHHHHhcCC--ccccc----cCCCCCCcHHHHHHHc---CCHHHHHHHhccCCCC--
Q 007778 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMN--LETAS----IPARNGYDSFHVAAKQ---GHLEVLKELLGEFPNL-- 220 (590)
Q Consensus 152 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~--~~~~~----~~~~~g~t~Lh~Aa~~---g~~~iv~~LL~~~~~~-- 220 (590)
.+..|..|.||||.|+..|+.++|+.|++... +.... ..+.+|.||||+|+.. |+.+++++|++.+++.
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 35678999999999999999999999998421 22222 3578999999999987 9999999999987542
Q ss_pred --------ccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhcc--------------CCchHHHHHHHcCCHHHH
Q 007778 221 --------VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN--------------NGKTVLHSAARMGHLEVV 278 (590)
Q Consensus 221 --------~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~--------------~g~tpLh~Aa~~g~~eiv 278 (590)
....|..|+||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 164 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 1125678999999999999999999999999998 55665 799999999999999999
Q ss_pred HHHHh---cCCCCccccCCCCCCHHHHHHhCCC---------HHHHHHHhcCCCccc------ccccCCCCCHHHHHHHc
Q 007778 279 KALVS---KDPSTGFRTDKKGQTALHMAVKGQN---------EDIVLELIRPDPSVL------KLEDNKGNTALHIAIKK 340 (590)
Q Consensus 279 ~~Ll~---~~~~~~~~~d~~G~T~Lh~A~~~g~---------~~iv~~Ll~~~~~~~------~~~d~~G~TpLh~A~~~ 340 (590)
++|++ +|++++. +|.+|+||||+|+..|+ .+++++|++.|+++- +.+|..|+||||+|+..
T Consensus 165 ~~Ll~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 165 KFLLQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHhcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence 99999 8999886 59999999999999988 899999999887652 35899999999999999
Q ss_pred CCchhhhccccccC
Q 007778 341 GRTQEAGAAHSKDH 354 (590)
Q Consensus 341 g~~~~~~~l~~~~~ 354 (590)
|+.+.+..+.....
T Consensus 244 g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 244 GKIGVLAYILQREI 257 (273)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHCCC
Confidence 99999888865443
No 53
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=7.5e-30 Score=256.59 Aligned_cols=192 Identities=21% Similarity=0.288 Sum_probs=159.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 007778 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (590)
Q Consensus 120 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh 199 (590)
+.+++|.|+..|+.+.++.+++.+. ...++..|.+|.||||+|+..|+.+++++|++. +..+++..+..|.||||
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~----~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~ 150 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLL----DYVVNIADSNGNTALHYSVSHANFPVVQQLLDS-GVCKVDKQNRAGYSPIM 150 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHH----HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-SCCCTTCCCTTSCCHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHH----hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCCCCCCCCCCHHH
Confidence 3467888888888888888887643 244778888899999999999999999999987 23367778888899999
Q ss_pred HHH-----HcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCC
Q 007778 200 VAA-----KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 274 (590)
Q Consensus 200 ~Aa-----~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~ 274 (590)
+|+ ..++.++++.|++.+.. ....|..|+||||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+
T Consensus 151 ~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 151 LTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp HGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCC
Confidence 888 66788889888888865 5567778889999999999999999999988887 6778889999999999999
Q ss_pred HHHHHHHHh-cCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCC
Q 007778 275 LEVVKALVS-KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 319 (590)
Q Consensus 275 ~eiv~~Ll~-~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~ 319 (590)
.+++++|++ .|++++. +|.+|+||||+|+..|+.+++++|+++.
T Consensus 229 ~~iv~~Ll~~~gad~~~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 229 KEIAGLLLAVPSCDISL-TDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHHTSTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCcC-cCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999998 7888776 4888999999999999999999888764
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3.2e-30 Score=256.19 Aligned_cols=192 Identities=20% Similarity=0.186 Sum_probs=164.2
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHh----cCCccccccC----CCCCCcHHHHHH---HcCCHHHHHHHhccCCCC----
Q 007778 156 NQEGETPLYVAAESGHALIVEEMLQ----HMNLETASIP----ARNGYDSFHVAA---KQGHLEVLKELLGEFPNL---- 220 (590)
Q Consensus 156 n~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~----~~~g~t~Lh~Aa---~~g~~~iv~~LL~~~~~~---- 220 (590)
+..|+||||.|++.|+.+.++.|++ . +...+.. +.+|.||||+|+ ..|+.+++++|++.+++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 5678999999999999996666665 5 3333333 377999999999 779999999999986431
Q ss_pred ------ccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhc--------------cCCchHHHHHHHcCCHHHHHH
Q 007778 221 ------VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR--------------NNGKTVLHSAARMGHLEVVKA 280 (590)
Q Consensus 221 ------~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d--------------~~g~tpLh~Aa~~g~~eiv~~ 280 (590)
....|..|+||||+|+..|+.++|++|+++|+++ +..+ ..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 3344568999999999999999999999999998 5556 589999999999999999999
Q ss_pred HHh---cCCCCccccCCCCCCHHHHHHhCCC---------HHHHHHHhcCCCccc------ccccCCCCCHHHHHHHcCC
Q 007778 281 LVS---KDPSTGFRTDKKGQTALHMAVKGQN---------EDIVLELIRPDPSVL------KLEDNKGNTALHIAIKKGR 342 (590)
Q Consensus 281 Ll~---~~~~~~~~~d~~G~T~Lh~A~~~g~---------~~iv~~Ll~~~~~~~------~~~d~~G~TpLh~A~~~g~ 342 (590)
|++ +|++++. +|..|+||||+|+..++ .+++++|++.|+++. +.+|.+|+||||+|+..|+
T Consensus 159 Ll~~~~~ga~~~~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 159 LTENGHKQADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHhccccCCCCcc-cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 999 8999886 49999999999998887 799999999887652 6799999999999999999
Q ss_pred chhhhcccc
Q 007778 343 TQEAGAAHS 351 (590)
Q Consensus 343 ~~~~~~l~~ 351 (590)
.+.+..+..
T Consensus 238 ~~~v~~Ll~ 246 (260)
T 3jxi_A 238 IGIFQHIIR 246 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877753
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=6.1e-29 Score=235.43 Aligned_cols=165 Identities=24% Similarity=0.261 Sum_probs=151.0
Q ss_pred HhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCC
Q 007778 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCS 229 (590)
Q Consensus 150 ~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~ 229 (590)
.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~ 102 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGK 102 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSC
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCC
Confidence 34678899999999999999999999999997 567788889999999999999999999999999988 567888999
Q ss_pred cHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCH
Q 007778 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 309 (590)
Q Consensus 230 TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~ 309 (590)
||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~ 180 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISA-RDLTGLTAEASARIFGRQ 180 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCcH
Confidence 9999999999999999999999997 77889999999999999999999999999999876 489999999999999999
Q ss_pred HHHHHHhcCC
Q 007778 310 DIVLELIRPD 319 (590)
Q Consensus 310 ~iv~~Ll~~~ 319 (590)
+++++|++.+
T Consensus 181 ~~v~~Ll~~~ 190 (192)
T 2rfm_A 181 EVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999998754
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=6.1e-29 Score=231.01 Aligned_cols=169 Identities=21% Similarity=0.204 Sum_probs=100.2
Q ss_pred CcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcC
Q 007778 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG 239 (590)
Q Consensus 160 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g 239 (590)
.||||.|+..|+.+++++|++.. ....+..+..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred hhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 45666666666666666666552 223455555666666666666666666666666555 3445566666666666666
Q ss_pred ChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCC
Q 007778 240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 319 (590)
Q Consensus 240 ~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~ 319 (590)
+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++. .|..|+||||+|+..|+.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-EADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 666666666666665 55566666666666666666666666666666654 3666666666666666666666666666
Q ss_pred CcccccccCCCCCH
Q 007778 320 PSVLKLEDNKGNTA 333 (590)
Q Consensus 320 ~~~~~~~d~~G~Tp 333 (590)
++. ...+..|.||
T Consensus 159 ~~~-~~~~~~~~~p 171 (172)
T 3v30_A 159 LKL-FQSNLVPADP 171 (172)
T ss_dssp HHH-SCC-------
T ss_pred HHH-hcccCCCCCC
Confidence 554 4445555554
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.3e-28 Score=228.86 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=150.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 007778 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (590)
Q Consensus 120 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh 199 (590)
+.||||.||..|+.+.++.|++.++. .++..|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 74 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDN-----LVNKPDERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALS 74 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSG-----GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcc-----cccCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHH
Confidence 45899999999999999999998764 3688899999999999999999999999998 5678888999999999
Q ss_pred HHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHH
Q 007778 200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK 279 (590)
Q Consensus 200 ~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~ 279 (590)
+|+..|+.+++++|++.+.+ .+..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~ 152 (172)
T 3v30_A 75 LASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQ 152 (172)
T ss_dssp HHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHH
Confidence 99999999999999999988 6678899999999999999999999999999997 778999999999999999999999
Q ss_pred HHHhcCCCCccccCCCCCCH
Q 007778 280 ALVSKDPSTGFRTDKKGQTA 299 (590)
Q Consensus 280 ~Ll~~~~~~~~~~d~~G~T~ 299 (590)
+|++++++... .+..|.||
T Consensus 153 ~L~~~~~~~~~-~~~~~~~p 171 (172)
T 3v30_A 153 VIENHILKLFQ-SNLVPADP 171 (172)
T ss_dssp HHHHHHHHHSC-C-------
T ss_pred HHHHHHHHHhc-ccCCCCCC
Confidence 99999988765 37777776
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=253.24 Aligned_cols=190 Identities=24% Similarity=0.293 Sum_probs=172.9
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHH--
Q 007778 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA-- 236 (590)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa-- 236 (590)
+.+++|.|+..|+.+.++.+++......++..|.+|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 367899999999999999999874444578899999999999999999999999999998568889999999999999
Q ss_pred ---HcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHH
Q 007778 237 ---AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 313 (590)
Q Consensus 237 ---~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~ 313 (590)
..++.+++++|++.|.+. ...+..|.||||+|+..|+.+++++|+++|++++.. |.+|+||||+|+..|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHHH
Confidence 668899999999999776 667889999999999999999999999999999874 999999999999999999999
Q ss_pred HHhc-CCCcccccccCCCCCHHHHHHHcCCchhhhcccc
Q 007778 314 ELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHS 351 (590)
Q Consensus 314 ~Ll~-~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~~ 351 (590)
+|++ .|+++ +.+|.+|+||||+|+..|+.+.+..+..
T Consensus 234 ~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 271 (276)
T 4hbd_A 234 LLLAVPSCDI-SLTDRDGSTALMVALDAGQSEIASMLYS 271 (276)
T ss_dssp HHHTSTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhcCCCCC-cCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 9999 67766 9999999999999999999998877643
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.7e-28 Score=225.37 Aligned_cols=159 Identities=27% Similarity=0.300 Sum_probs=137.0
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHH
Q 007778 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237 (590)
Q Consensus 158 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~ 237 (590)
...||||.|+..|+.+++++|++. +.+.+..+..|.||||+|+. |+.+++++|++.+.+ .+..|..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAAR 79 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 457899999999999999999986 56677788889999999988 999999999998877 55778889999999999
Q ss_pred cCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhc
Q 007778 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317 (590)
Q Consensus 238 ~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~ 317 (590)
.|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++.....|..|+||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 80 AGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158 (162)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999887 67788999999999999999999999999988655568899999999999999999999998
Q ss_pred CCCc
Q 007778 318 PDPS 321 (590)
Q Consensus 318 ~~~~ 321 (590)
+|++
T Consensus 159 ~GAd 162 (162)
T 1ihb_A 159 NGAG 162 (162)
T ss_dssp TC--
T ss_pred hCCC
Confidence 8864
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=2.6e-28 Score=225.61 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=132.7
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHH
Q 007778 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237 (590)
Q Consensus 158 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~ 237 (590)
.|.||||.|+..|+.+++++|++. +..++..+.+|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHH
Confidence 477888888888888888888887 455677788888888888888888888888888777 55677888888888888
Q ss_pred cCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhc
Q 007778 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317 (590)
Q Consensus 238 ~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~ 317 (590)
.|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++. .|..|+||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888887 66788888888888888888888888888888776 48888888888888888888888888
Q ss_pred CCCcc
Q 007778 318 PDPSV 322 (590)
Q Consensus 318 ~~~~~ 322 (590)
++...
T Consensus 157 ~~~~~ 161 (167)
T 3v31_A 157 HLLKL 161 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=3.2e-28 Score=230.52 Aligned_cols=163 Identities=23% Similarity=0.246 Sum_probs=152.2
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCC
Q 007778 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR 192 (590)
Q Consensus 113 ~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 192 (590)
.+.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++. +.+++..+.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~ 99 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK------LEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDF 99 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCT
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc------cccccccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCC
Confidence 457899999999999999999999999998764 578899999999999999999999999998 567788899
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHc
Q 007778 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM 272 (590)
Q Consensus 193 ~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~ 272 (590)
.|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus 100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~ 177 (192)
T 2rfm_A 100 SGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIF 177 (192)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHh
Confidence 999999999999999999999999988 5678999999999999999999999999999997 77899999999999999
Q ss_pred CCHHHHHHHHhcC
Q 007778 273 GHLEVVKALVSKD 285 (590)
Q Consensus 273 g~~eiv~~Ll~~~ 285 (590)
|+.+++++|++++
T Consensus 178 ~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 178 GRQEVIKIFTEVR 190 (192)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CcHHHHHHHHhcc
Confidence 9999999999865
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=3.4e-28 Score=223.39 Aligned_cols=159 Identities=28% Similarity=0.354 Sum_probs=146.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHH
Q 007778 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF 198 (590)
Q Consensus 119 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L 198 (590)
...||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+. |+.+++++|++. +.+++..+..|.|||
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L 74 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN------VNAQNGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVI 74 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC------ccccCccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHH
Confidence 457999999999999999999998764 57889999999999999 999999999998 567788899999999
Q ss_pred HHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHH
Q 007778 199 HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278 (590)
Q Consensus 199 h~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv 278 (590)
|+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++|++..+..|..|.||||+|+..|+.+++
T Consensus 75 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~ 153 (162)
T 1ihb_A 75 HDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153 (162)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 999999999999999999988 6678999999999999999999999999999986688899999999999999999999
Q ss_pred HHHHhcCCC
Q 007778 279 KALVSKDPS 287 (590)
Q Consensus 279 ~~Ll~~~~~ 287 (590)
++|+++|+|
T Consensus 154 ~~Ll~~GAd 162 (162)
T 1ihb_A 154 SLMQANGAG 162 (162)
T ss_dssp HHHHHTC--
T ss_pred HHHHHhCCC
Confidence 999999975
No 63
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=7.8e-29 Score=255.40 Aligned_cols=182 Identities=18% Similarity=0.196 Sum_probs=151.9
Q ss_pred CcccCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCC---HHHHHHHHhcCC
Q 007778 108 ERKKNKDS-PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH---ALIVEEMLQHMN 183 (590)
Q Consensus 108 ~~~~~~~~-~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~---~~iv~~Ll~~~~ 183 (590)
..+.+++. .|..|.||||+||..|+.++|++||+.+.+ ++.+|..|+||||+|+..|+ .++++.|++..
T Consensus 118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad------~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~- 190 (327)
T 1sw6_A 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN------RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL- 190 (327)
T ss_dssp TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-
T ss_pred hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhh-
Confidence 45678888 899999999999999999999999999875 67889999999999999999 68888888862
Q ss_pred ccccccCCCCCCcHHHHHHH----cCCHHHHHHHhcc--------------------CCCCccccCCCCCcHHHHHHHcC
Q 007778 184 LETASIPARNGYDSFHVAAK----QGHLEVLKELLGE--------------------FPNLVMTTDLSCSTALHTAAAQG 239 (590)
Q Consensus 184 ~~~~~~~~~~g~t~Lh~Aa~----~g~~~iv~~LL~~--------------------~~~~~~~~d~~g~TpLh~Aa~~g 239 (590)
...++..|.+|.||||+|+. .|+.++++.|++. +.+ ++..|..|+||||.|+.
T Consensus 191 ~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~-- 267 (327)
T 1sw6_A 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD-- 267 (327)
T ss_dssp GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS--
T ss_pred hccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH--
Confidence 34678889999999999999 8999999999977 455 56788999999999985
Q ss_pred ChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCC
Q 007778 240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 307 (590)
Q Consensus 240 ~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g 307 (590)
+++|++++ + +..|.+|+||||+|+..|+.++|++|+++|++++. +|.+|+||||+|+++|
T Consensus 268 ----~~~Ll~~~--~-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~-~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 268 ----LKWIIANM--L-NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI-ANKSGLRPVDFGAGLE 327 (327)
T ss_dssp ----HHHHHHHT--T-TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC-CCTTSCCGGGGTCC--
T ss_pred ----HHHHHHhC--C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHhcC
Confidence 89999984 3 66899999999999999999999999999999987 4999999999998765
No 64
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.2e-27 Score=221.92 Aligned_cols=160 Identities=29% Similarity=0.422 Sum_probs=135.9
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHH
Q 007778 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234 (590)
Q Consensus 155 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~ 234 (590)
....+.||||.|+..|+.+++++|+++ +.+++..+.+|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRL 86 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHH
Confidence 345667889999999999999999987 556777888889999999999999999999988877 55678889999999
Q ss_pred HHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHH
Q 007778 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 314 (590)
Q Consensus 235 Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~ 314 (590)
|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++. .|..|.||||+|+..|+.+++++
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA-QDKFGKTAFDISIDNGNEDLAEI 164 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhCCHHHHHH
Confidence 99999999999999998887 67788899999999999999999999999988875 48889999999999999999999
Q ss_pred HhcCC
Q 007778 315 LIRPD 319 (590)
Q Consensus 315 Ll~~~ 319 (590)
|++.|
T Consensus 165 L~~~G 169 (169)
T 2y1l_E 165 LQKLN 169 (169)
T ss_dssp HHTC-
T ss_pred HHHcC
Confidence 98764
No 65
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=9.9e-31 Score=255.62 Aligned_cols=204 Identities=18% Similarity=0.158 Sum_probs=159.2
Q ss_pred HHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhcc
Q 007778 137 MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGE 216 (590)
Q Consensus 137 ~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~ 216 (590)
+.||+.+.+. ...+..+.+|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++.
T Consensus 2 ~~ll~~~~~~---~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 76 (229)
T 2vge_A 2 RSVLRKAGSP---RKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITA 76 (229)
T ss_dssp --------CC---CCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred eehhccCCCC---ccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 4566665542 22345566778889999999999999999987 556777888899999999999999999999988
Q ss_pred CCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHH--HHcCCHHHHHHHHhcCCCCccccCC
Q 007778 217 FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA--ARMGHLEVVKALVSKDPSTGFRTDK 294 (590)
Q Consensus 217 ~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~A--a~~g~~eiv~~Ll~~~~~~~~~~d~ 294 (590)
+++ ++..|..|+||||+|+..|+.+++++|++.|+++....+.+|.||||+| +..|+.+++++|+++|++++.. |.
T Consensus 77 ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~-~~ 154 (229)
T 2vge_A 77 GAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-NS 154 (229)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS-GG
T ss_pred CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc-cC
Confidence 887 5677888999999999999999999999999987433346899999999 8999999999999999888764 88
Q ss_pred CCCCHHHHHHhCCCHHHHHHHhcCCCcc-cccccCCCCCHHHHHHHcCCchhhhccc
Q 007778 295 KGQTALHMAVKGQNEDIVLELIRPDPSV-LKLEDNKGNTALHIAIKKGRTQEAGAAH 350 (590)
Q Consensus 295 ~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~-~~~~d~~G~TpLh~A~~~g~~~~~~~l~ 350 (590)
.|.||+|.++..+. .++|++.|+++ ++.+|.+|+||||+|+..|+.+.+....
T Consensus 155 ~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 155 GAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp GEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred CchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 88899886555443 36778888763 4788999999999999999988776543
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=6.3e-28 Score=223.02 Aligned_cols=161 Identities=23% Similarity=0.290 Sum_probs=150.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHH
Q 007778 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF 198 (590)
Q Consensus 119 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L 198 (590)
.|.||||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++. +.+++..+..|.|||
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L 73 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV------INHTDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESAL 73 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHH
Confidence 588999999999999999999998754 688899999999999999999999999998 567788899999999
Q ss_pred HHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHH
Q 007778 199 HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278 (590)
Q Consensus 199 h~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv 278 (590)
|+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~ 151 (167)
T 3v31_A 74 SLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQ 151 (167)
T ss_dssp HHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHH
Confidence 999999999999999999988 5678999999999999999999999999999997 77899999999999999999999
Q ss_pred HHHHhcCCCCc
Q 007778 279 KALVSKDPSTG 289 (590)
Q Consensus 279 ~~Ll~~~~~~~ 289 (590)
++|++++++..
T Consensus 152 ~~L~~~~~~~~ 162 (167)
T 3v31_A 152 QVIESHLLKLL 162 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999876543
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=2.1e-27 Score=220.22 Aligned_cols=161 Identities=29% Similarity=0.378 Sum_probs=146.9
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCC
Q 007778 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG 194 (590)
Q Consensus 115 ~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g 194 (590)
.....+.++||.||+.|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++ +.+.+..+..|
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g 80 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANGAD------VNAEDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAG 80 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTS
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCC
Confidence 3466778999999999999999999998765 578899999999999999999999999997 56778889999
Q ss_pred CcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCC
Q 007778 195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 274 (590)
Q Consensus 195 ~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~ 274 (590)
.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+
T Consensus 81 ~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 81 MTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCC
Confidence 9999999999999999999999988 5678899999999999999999999999999997 7789999999999999999
Q ss_pred HHHHHHHHhcC
Q 007778 275 LEVVKALVSKD 285 (590)
Q Consensus 275 ~eiv~~Ll~~~ 285 (590)
.+++++|++.|
T Consensus 159 ~~~~~~L~~~G 169 (169)
T 2y1l_E 159 EDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHcC
Confidence 99999999875
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=8.2e-28 Score=221.77 Aligned_cols=160 Identities=24% Similarity=0.273 Sum_probs=127.7
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHH
Q 007778 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA 235 (590)
Q Consensus 156 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~A 235 (590)
|.+|.||||.|+..|+.++++.|++. .+......+..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHH
Confidence 56677888888888888888888875 3445566667778888888888888888888888777 556777888888888
Q ss_pred HHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHH
Q 007778 236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315 (590)
Q Consensus 236 a~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~L 315 (590)
+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++. +|.+|+||||+|+. ++.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK-KNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCChhHhHhc-CChHHHHHH
Confidence 8888888888888888887 66788888888888888888888888888888776 48888888888766 888888888
Q ss_pred hcCCC
Q 007778 316 IRPDP 320 (590)
Q Consensus 316 l~~~~ 320 (590)
++.|+
T Consensus 160 ~~~gA 164 (165)
T 3twr_A 160 RGDAA 164 (165)
T ss_dssp HTC--
T ss_pred hhccc
Confidence 87764
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1.8e-27 Score=222.77 Aligned_cols=168 Identities=21% Similarity=0.277 Sum_probs=130.5
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHH
Q 007778 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236 (590)
Q Consensus 157 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa 236 (590)
.++.+|||.|+..|+.+++++|++. .+...+..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence 3567788888888888888888876 3445667777888888888888888888888888777 5567778888888888
Q ss_pred HcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHh
Q 007778 237 AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316 (590)
Q Consensus 237 ~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll 316 (590)
..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++. .|..|+||||+|+..++.+++++|+
T Consensus 81 ~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB-CCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch-hccCCCCcHHHHHHHHHHHHHHHHH
Confidence 888888888888888886 66788888888888888888888888888888776 4888888888888888888888888
Q ss_pred cCCCcccccccCC
Q 007778 317 RPDPSVLKLEDNK 329 (590)
Q Consensus 317 ~~~~~~~~~~d~~ 329 (590)
+.++++ +..+..
T Consensus 159 ~~g~~~-~~~~~~ 170 (179)
T 3f6q_A 159 KMGQNL-NRIPYK 170 (179)
T ss_dssp HTTCCC-SCBCCC
T ss_pred HhhcCc-ccCCcc
Confidence 888776 444443
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=4.5e-27 Score=214.15 Aligned_cols=150 Identities=26% Similarity=0.291 Sum_probs=115.4
Q ss_pred CcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcC
Q 007778 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG 239 (590)
Q Consensus 160 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g 239 (590)
.||||.|+..|+.+++++|++.+. ... .+..|.||||+|+..|+.+++++|++.+.+ .+..|..|+||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCC--CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 577888888888888888887632 222 466778888888888888888888877776 4566777888888888888
Q ss_pred ChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHH
Q 007778 240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315 (590)
Q Consensus 240 ~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~L 315 (590)
+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++. +|..|+||||+|+..|+.+++++|
T Consensus 79 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 79 HANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHh
Confidence 888888888888776 66677788888888888888888888888877765 477788888888888888887776
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=3.2e-27 Score=215.56 Aligned_cols=154 Identities=25% Similarity=0.324 Sum_probs=120.3
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHc
Q 007778 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ 238 (590)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~ 238 (590)
|.||||.|+..|+.+++++|++. .+...+..+..|.||||+ +..|+.+++++|++.+++ .+..|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence 45778888888888888888876 445666777778888888 777888888888877776 456777888888888888
Q ss_pred CChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcC
Q 007778 239 GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 318 (590)
Q Consensus 239 g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ 318 (590)
|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. ++++. .|.+|.||||+|+..|+.+++++|+++
T Consensus 79 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR-RDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8888888888888776 66777888888888888888888888887 66665 477888888888888888888888764
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=1.7e-27 Score=219.59 Aligned_cols=161 Identities=27% Similarity=0.307 Sum_probs=145.3
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 007778 116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY 195 (590)
Q Consensus 116 ~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~ 195 (590)
.|..|+||||.|++.|+.++++.|++.++. ..+..+..|.||||+|+..|+.+++++|++. +.+++..+.+|.
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~ 76 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV-----NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGL 76 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTT-----TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCC-----CccccccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCC
Confidence 467789999999999999999999986543 2567788899999999999999999999998 567888899999
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCH
Q 007778 196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 275 (590)
Q Consensus 196 t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~ 275 (590)
||||+|+..|+.+++++|++.+.+ .+..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+. |+.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~ 153 (165)
T 3twr_A 77 VPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDT 153 (165)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCH
T ss_pred CHHHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CCh
Confidence 999999999999999999999988 5678999999999999999999999999999997 7889999999999776 999
Q ss_pred HHHHHHHhcCC
Q 007778 276 EVVKALVSKDP 286 (590)
Q Consensus 276 eiv~~Ll~~~~ 286 (590)
+++++|+++|+
T Consensus 154 ~i~~~L~~~gA 164 (165)
T 3twr_A 154 DIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHhhccc
Confidence 99999999875
No 73
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.8e-30 Score=250.17 Aligned_cols=200 Identities=19% Similarity=0.163 Sum_probs=172.5
Q ss_pred cccCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccc
Q 007778 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETAS 188 (590)
Q Consensus 109 ~~~~~~~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~ 188 (590)
.....+..+..|.||||.||..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++. +.+++
T Consensus 10 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n 81 (229)
T 2vge_A 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND------PSQPNEEGITALHNAICGANYSIVDFLITA--GANVN 81 (229)
T ss_dssp CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTT
T ss_pred CCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCC
Confidence 3444556778889999999999999999999998764 578899999999999999999999999998 67788
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHH--HHcCChhHHHHhhhcCCchhhhhccCCchHH
Q 007778 189 IPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA--AAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266 (590)
Q Consensus 189 ~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~A--a~~g~~eiv~~LL~~g~~~~~~~d~~g~tpL 266 (590)
..|.+|.||||+|+..|+.+++++|++.++++....+..|+||||+| +..|+.+++++|++.|+++ +..|..|.||+
T Consensus 82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l 160 (229)
T 2vge_A 82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYAL 160 (229)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEES
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHH
Confidence 89999999999999999999999999999996554457999999999 9999999999999999997 77788999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCC-ccccCCCCCCHHHHHHhCCCHHHHHH-HhcCCC
Q 007778 267 HSAARMGHLEVVKALVSKDPST-GFRTDKKGQTALHMAVKGQNEDIVLE-LIRPDP 320 (590)
Q Consensus 267 h~Aa~~g~~eiv~~Ll~~~~~~-~~~~d~~G~T~Lh~A~~~g~~~iv~~-Ll~~~~ 320 (590)
|.++..+.. ++|++.|+++ ...+|.+|+||||+|+.+|+.++|+. +++..+
T Consensus 161 ~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p 213 (229)
T 2vge_A 161 WDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFP 213 (229)
T ss_dssp SCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSC
T ss_pred HHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCC
Confidence 976655433 6788888874 23368999999999999999999975 444333
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=1.6e-26 Score=210.55 Aligned_cols=151 Identities=25% Similarity=0.311 Sum_probs=140.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 007778 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (590)
Q Consensus 120 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh 199 (590)
..|+||.|++.|+.+++++|++.+.+. ..+..|.||||+|+..|+.+++++|++. +.+.+..+..|.||||
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 72 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-------TTDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLH 72 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-------CCCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-------CcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence 458999999999999999999988742 2588899999999999999999999997 5677888999999999
Q ss_pred HHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHH
Q 007778 200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK 279 (590)
Q Consensus 200 ~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~ 279 (590)
+|+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++
T Consensus 73 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~ 150 (153)
T 1awc_B 73 MAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAE 150 (153)
T ss_dssp HHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999988 5678999999999999999999999999999997 778999999999999999999999
Q ss_pred HH
Q 007778 280 AL 281 (590)
Q Consensus 280 ~L 281 (590)
+|
T Consensus 151 ~L 152 (153)
T 1awc_B 151 IL 152 (153)
T ss_dssp HH
T ss_pred Hh
Confidence 87
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=5.9e-27 Score=219.25 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=150.8
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcH
Q 007778 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS 197 (590)
Q Consensus 118 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 197 (590)
..+.++||.||..|+.++++.|++.++.+ ++..|..|.||||+|+..|+.+++++|++. +.+++..+.+|.||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~ 75 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEND-----LNQGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTP 75 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccc-----ccccCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCH
Confidence 45678999999999999999999986532 678899999999999999999999999998 66788889999999
Q ss_pred HHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHH
Q 007778 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV 277 (590)
Q Consensus 198 Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~ei 277 (590)
||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.++
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~ 153 (179)
T 3f6q_A 76 LHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELL 153 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999988 6678999999999999999999999999999997 7889999999999999999999
Q ss_pred HHHHHhcCCCCccc
Q 007778 278 VKALVSKDPSTGFR 291 (590)
Q Consensus 278 v~~Ll~~~~~~~~~ 291 (590)
+++|+++|++++..
T Consensus 154 ~~~L~~~g~~~~~~ 167 (179)
T 3f6q_A 154 RERAEKMGQNLNRI 167 (179)
T ss_dssp HHHHHHTTCCCSCB
T ss_pred HHHHHHhhcCcccC
Confidence 99999999998754
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.6e-26 Score=210.94 Aligned_cols=154 Identities=28% Similarity=0.325 Sum_probs=141.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 007778 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (590)
Q Consensus 120 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh 199 (590)
|.||||.|+..|+.++++.|++..+. .++..|..|.||||+ +..|+.+++++|++. +.+++..|..|.||||
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 73 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELV-----HPDALNRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVH 73 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCC-----CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCc-----CccccCCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHH
Confidence 56999999999999999999988321 267889999999999 999999999999998 6678889999999999
Q ss_pred HHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHH
Q 007778 200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK 279 (590)
Q Consensus 200 ~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~ 279 (590)
+|+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++. +++ +..|.+|.||||+|+..|+.++++
T Consensus 74 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~ 150 (156)
T 1bd8_A 74 DAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVD 150 (156)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred HHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHH
Confidence 99999999999999999988 667889999999999999999999999999 776 778999999999999999999999
Q ss_pred HHHhc
Q 007778 280 ALVSK 284 (590)
Q Consensus 280 ~Ll~~ 284 (590)
+|+++
T Consensus 151 ~Ll~~ 155 (156)
T 1bd8_A 151 ILQGH 155 (156)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 99975
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=6.2e-28 Score=237.16 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=127.8
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHH
Q 007778 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA 235 (590)
Q Consensus 156 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~A 235 (590)
+..|.||||.|++.|+.++++.||++ +.+++. +..|.||||.|+..|+.++++.|++.+++ ++..|..|+||||+|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNA 77 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHH
Confidence 35689999999999999999999997 444443 36788999999999999999999999986 667889999999999
Q ss_pred HHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCC-CHHHHH--HhCCCHHHH
Q 007778 236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQ-TALHMA--VKGQNEDIV 312 (590)
Q Consensus 236 a~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~-T~Lh~A--~~~g~~~iv 312 (590)
+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++++.. |..|. ||||+| +..|+.+++
T Consensus 78 ~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-TYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee-cCCCCcchHHHHHHhhhccHHHH
Confidence 9999999999999999997 778999999999999999999999999999999875 55555 999999 788999999
Q ss_pred HHHhcCCCccccc---------ccCCCCCHHHHHHHcCC
Q 007778 313 LELIRPDPSVLKL---------EDNKGNTALHIAIKKGR 342 (590)
Q Consensus 313 ~~Ll~~~~~~~~~---------~d~~G~TpLh~A~~~g~ 342 (590)
++|++.+++. +. .|..|.+|+++|.+.|.
T Consensus 156 ~~Ll~~~a~~-~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 156 QFLYGVQEKM-GIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHHHT-TTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHhhhcc-cccccceEEEEeccCCCCCCcccccCCC
Confidence 9999877553 33 37778999999988775
No 78
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.1e-28 Score=258.21 Aligned_cols=218 Identities=22% Similarity=0.218 Sum_probs=163.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCcc-ccccCCCCCC
Q 007778 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-TASIPARNGY 195 (590)
Q Consensus 117 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~ 195 (590)
+.+++||||+||+.|+.++|++|++.+.+.. .....|..|.||||+|+..|+.++|++|++++... ..+..+.+ .
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~---~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~ 164 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDE---IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y 164 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCS---SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHH---HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence 4556799999999999999999999876321 12234567889999999999999999999984210 02233333 8
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCCcc-ccCCCCCcHHHHHH-HcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcC
Q 007778 196 DSFHVAAKQGHLEVLKELLGEFPNLVM-TTDLSCSTALHTAA-AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273 (590)
Q Consensus 196 t~Lh~Aa~~g~~~iv~~LL~~~~~~~~-~~d~~g~TpLh~Aa-~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g 273 (590)
||||+|+..|+.+++++|++.+++... ..|..|.||||+|+ ..|+.++|++|++.|+ .|.||||.|+..|
T Consensus 165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g 236 (376)
T 2aja_A 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYG 236 (376)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCC
Confidence 999999999999999999999988432 26778999999999 9999999999999763 2789999999999
Q ss_pred CHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCC---------------------------HHHHHHHhcCCCcc----
Q 007778 274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN---------------------------EDIVLELIRPDPSV---- 322 (590)
Q Consensus 274 ~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~---------------------------~~iv~~Ll~~~~~~---- 322 (590)
+.+++++|+++|+++... | ++++.|+.+|+ .+.+++|++.+...
T Consensus 237 ~~evv~lL~~~ga~~~~~-~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~ 311 (376)
T 2aja_A 237 EKYVNPFIARHVNRLKEM-H----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311 (376)
T ss_dssp TTTHHHHHHHHHHHHHHH-H----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSS
T ss_pred CHHHHHHHHhcCcccccc-c----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhc
Confidence 999999999998766432 2 23444444443 34455555533210
Q ss_pred cccccCCCCCHHHHHHHcCCchhhhcccc
Q 007778 323 LKLEDNKGNTALHIAIKKGRTQEAGAAHS 351 (590)
Q Consensus 323 ~~~~d~~G~TpLh~A~~~g~~~~~~~l~~ 351 (590)
....++.++||||+|+..|+.+.+..+..
T Consensus 312 ~g~~~n~~~~~L~~A~~~g~~e~v~lLl~ 340 (376)
T 2aja_A 312 TATIPGDANELLRLALRLGNQGACALLLS 340 (376)
T ss_dssp CCSSTTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred cCCCCCCccHHHHHHHHcCcHHHHHHHHc
Confidence 02234567899999999999998888864
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=5.5e-27 Score=230.39 Aligned_cols=208 Identities=20% Similarity=0.205 Sum_probs=144.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCc
Q 007778 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD 196 (590)
Q Consensus 117 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 196 (590)
+..|.||||.|++.|+.+.++.|++++.+. + .+..|.||||.|+..|+.+++++|++. +.+++..|.+|.|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~------~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t 72 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV------K-FNPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGIT 72 (239)
T ss_dssp ------------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCC
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCc------c-cCchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCC
Confidence 457999999999999999999999988652 2 347789999999999999999999987 5578889999999
Q ss_pred HHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCc-hHHHHH--HHcC
Q 007778 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGK-TVLHSA--ARMG 273 (590)
Q Consensus 197 ~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~-tpLh~A--a~~g 273 (590)
|||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|+++|+++ +..+..|. ||||+| +..|
T Consensus 73 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 73 ALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhc
Confidence 99999999999999999999988 6778999999999999999999999999999998 56666665 999999 8899
Q ss_pred CHHHHHHHHhcCCCCccc--------cCCCCCCHHHHHHhCCCHHHHHHHhcCCCcc-----cccccCCCCCHHHHH
Q 007778 274 HLEVVKALVSKDPSTGFR--------TDKKGQTALHMAVKGQNEDIVLELIRPDPSV-----LKLEDNKGNTALHIA 337 (590)
Q Consensus 274 ~~eiv~~Ll~~~~~~~~~--------~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~-----~~~~d~~G~TpLh~A 337 (590)
+.+++++|++++++.... .|..+++++++|...|. +++.|.+.+... ....++.|.+|.++.
T Consensus 151 ~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv 225 (239)
T 1ycs_B 151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225 (239)
T ss_dssp CCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGE
T ss_pred cHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHe
Confidence 999999999998876542 26678999999988886 444554443320 123455566666554
No 80
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=8.7e-27 Score=243.78 Aligned_cols=198 Identities=21% Similarity=0.194 Sum_probs=156.0
Q ss_pred CChHHHHHHH-cCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCcc-ccccCCCCCCcH
Q 007778 120 GDLQLHLAAR-AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-TASIPARNGYDS 197 (590)
Q Consensus 120 g~t~Lh~Aa~-~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~ 197 (590)
+.+++++|+. .++.+.++++++.+. +++||||+|+..|+.++|++|++.+... .....+..|.||
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~-------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tp 131 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGI-------------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA 131 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTC-------------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCC-------------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCH
Confidence 3467777776 577888888887654 3459999999999999999999984311 112345568899
Q ss_pred HHHHHHcCCHHHHHHHhccCCCCc--cccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhh-hhccCCchHHHHHH-HcC
Q 007778 198 FHVAAKQGHLEVLKELLGEFPNLV--MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK-IARNNGKTVLHSAA-RMG 273 (590)
Q Consensus 198 Lh~Aa~~g~~~iv~~LL~~~~~~~--~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~-~~d~~g~tpLh~Aa-~~g 273 (590)
||+|+..|+.++|++|++.+++.. +..+.+ .||||+||..|+.++|++|+++|+++.. ..|..|.||||+|+ ..|
T Consensus 132 L~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G 210 (376)
T 2aja_A 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCC
Confidence 999999999999999999997521 122222 8999999999999999999999999733 27888999999999 999
Q ss_pred CHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCch
Q 007778 274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344 (590)
Q Consensus 274 ~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~ 344 (590)
+.++|++|++.|+ .|.||||+|+.+|+.+++++|++.++++ +..| ++++.|+.+|+.+
T Consensus 211 ~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~ 268 (376)
T 2aja_A 211 HHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFD 268 (376)
T ss_dssp CHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCC
T ss_pred CHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccc-cccc----HHHHHHHHCCChh
Confidence 9999999999663 3889999999999999999999987654 4333 3555565555554
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=6.6e-25 Score=200.61 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=93.3
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCch-HHH
Q 007778 189 IPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT-VLH 267 (590)
Q Consensus 189 ~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~t-pLh 267 (590)
..+..|.||||+|+..|+.+++++|++.+.+ .+..|..|+||||+|+ .|+.+++++|+++|+++ +..|..|.| |||
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH 83 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence 3455667777777777777777777777666 4556677777777774 77777777777777776 566777777 888
Q ss_pred HHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHH
Q 007778 268 SAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 337 (590)
Q Consensus 268 ~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A 337 (590)
+|+..|+.+++++|+++|++++. +|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||.+-+
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccccC
Confidence 88888888888888888777765 3777888888888888888888888887776 77777887777643
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=1.3e-24 Score=193.97 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=81.8
Q ss_pred ccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccC-Cch
Q 007778 186 TASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKT 264 (590)
Q Consensus 186 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~-g~t 264 (590)
+++..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+. |+.+++++|+++|+++ +..|.. |.|
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t 80 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTR 80 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBC
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCC
Confidence 4455555666666666666666666666666555 34455666666666666 6666666666666665 445555 666
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCC
Q 007778 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320 (590)
Q Consensus 265 pLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~ 320 (590)
|||+|+..|+.+++++|+++|++++. .|..|+||||+|+..++.+++++|+++|+
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDV-CDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCC-CSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 66666666666666666666666554 36666666666666666666666666544
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=3.8e-25 Score=208.75 Aligned_cols=154 Identities=13% Similarity=0.031 Sum_probs=121.8
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhcCCccccccCC-CCCCcHHHHHHHcCCH----HHHHHHhccCCCCccccCCCCCcHHH
Q 007778 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGYDSFHVAAKQGHL----EVLKELLGEFPNLVMTTDLSCSTALH 233 (590)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~----~iv~~LL~~~~~~~~~~d~~g~TpLh 233 (590)
+.++|+.|++.|+.+.++.++... .+..+ ..|.||||+|+..|+. +++++|++.|++ ++.+|..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHH
Confidence 467888888888888888888752 22233 5688888888888875 488888888887 5677888888888
Q ss_pred HHHHcCC------hhHHHHhhhcCCchhhhhccCCc-hHHHHHHHcC-----CHHHHHHHHh-cCCCCccccCCCCCCHH
Q 007778 234 TAAAQGH------IDVVNFLLEIDSNLAKIARNNGK-TVLHSAARMG-----HLEVVKALVS-KDPSTGFRTDKKGQTAL 300 (590)
Q Consensus 234 ~Aa~~g~------~eiv~~LL~~g~~~~~~~d~~g~-tpLh~Aa~~g-----~~eiv~~Ll~-~~~~~~~~~d~~G~T~L 300 (590)
+|+..|+ .+++++|+++|+++ +..|..|. ||||+|+..+ +.+++++|++ +|++++. +|..|+|||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~-~d~~G~TpL 158 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI-KDKWGLTAL 158 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC-CCTTSCCHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc-cCCCCCCHH
Confidence 8888876 46788888888887 77788888 8888888844 4568888888 8888876 488899999
Q ss_pred HHHHhCCCHHHHHHHhcCC
Q 007778 301 HMAVKGQNEDIVLELIRPD 319 (590)
Q Consensus 301 h~A~~~g~~~iv~~Ll~~~ 319 (590)
|+|++.|+.+++++|.+..
T Consensus 159 ~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp HHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999888888654
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.8e-24 Score=197.73 Aligned_cols=146 Identities=21% Similarity=0.201 Sum_probs=114.6
Q ss_pred hcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCc-
Q 007778 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCST- 230 (590)
Q Consensus 152 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~T- 230 (590)
....+..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+ .|+.+++++|++.+.+ ++..|..|+|
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~tt 80 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTR 80 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCC
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcH
Confidence 455678899999999999999999999987 5677888999999999985 8999999999999888 6678889998
Q ss_pred HHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHH
Q 007778 231 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA 303 (590)
Q Consensus 231 pLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A 303 (590)
|||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||.+-+
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~~~~~ 151 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-NHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc-CcCcCcccccC
Confidence 999999999999999999999997 778999999999999999999999999999998864 88999998744
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=3.2e-24 Score=191.34 Aligned_cols=131 Identities=20% Similarity=0.245 Sum_probs=116.1
Q ss_pred hcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCC-CCc
Q 007778 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLS-CST 230 (590)
Q Consensus 152 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~-g~T 230 (590)
++..|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+. |+.+++++|++.+++ ++..|.. |+|
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t 80 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTR 80 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBC
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCC
Confidence 577888999999999999999999999987 56777888899999999999 999999999999888 5567777 899
Q ss_pred HHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCC
Q 007778 231 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 287 (590)
Q Consensus 231 pLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~ 287 (590)
|||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999887 77888999999999999999999999998875
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=3.4e-24 Score=202.22 Aligned_cols=157 Identities=14% Similarity=0.083 Sum_probs=138.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccC-CCCCcHHHHHHHhCCH----HHHHHHHhcCCccccccCCCCC
Q 007778 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKN-QEGETPLYVAAESGHA----LIVEEMLQHMNLETASIPARNG 194 (590)
Q Consensus 120 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n-~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~~g 194 (590)
+.++|+.||+.|+.+.++.++..+. +..+ ..|+||||+|+..|+. +++++||++ +++++.+|.+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g 75 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--------EDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEG 75 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCC
Confidence 4578999999999999999998754 2334 6799999999999985 599999997 77889999999
Q ss_pred CcHHHHHHHcCC------HHHHHHHhccCCCCccccCCCCC-cHHHHHHHcCC-----hhHHHHhhh-cCCchhhhhccC
Q 007778 195 YDSFHVAAKQGH------LEVLKELLGEFPNLVMTTDLSCS-TALHTAAAQGH-----IDVVNFLLE-IDSNLAKIARNN 261 (590)
Q Consensus 195 ~t~Lh~Aa~~g~------~~iv~~LL~~~~~~~~~~d~~g~-TpLh~Aa~~g~-----~eiv~~LL~-~g~~~~~~~d~~ 261 (590)
.||||+|+..|+ .+++++|++.|++ ++.+|..|+ ||||+|+..+. .+++++|++ +|+++ +..|..
T Consensus 76 ~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~ 153 (186)
T 3t8k_A 76 TTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKW 153 (186)
T ss_dssp CCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTT
T ss_pred CcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCC
Confidence 999999999987 6889999999998 678899999 99999999554 569999999 99998 889999
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCC
Q 007778 262 GKTVLHSAARMGHLEVVKALVSKDPST 288 (590)
Q Consensus 262 g~tpLh~Aa~~g~~eiv~~Ll~~~~~~ 288 (590)
|.||||+|+..|+.++|++|.+.....
T Consensus 154 G~TpL~~A~~~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 154 GLTALEFVKRCQKPIALKMMEDYIKKY 180 (186)
T ss_dssp SCCHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999875433
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=7.8e-23 Score=178.55 Aligned_cols=124 Identities=41% Similarity=0.611 Sum_probs=67.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcC
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g 273 (590)
|.||||.|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence 44555555555555555555555444 3334455555555555555555555555555554 444555555555555555
Q ss_pred CHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCC
Q 007778 274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320 (590)
Q Consensus 274 ~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~ 320 (590)
+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|+
T Consensus 80 ~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 55555555555555543 35555555555555555555555555543
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.2e-22 Score=177.37 Aligned_cols=126 Identities=42% Similarity=0.607 Sum_probs=109.9
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHH
Q 007778 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237 (590)
Q Consensus 158 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~ 237 (590)
+|+||||+|+..|+.+++++|+++ +...+..+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHH
Confidence 478999999999999999999987 456677788899999999999999999999988877 55678889999999999
Q ss_pred cCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCC
Q 007778 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 287 (590)
Q Consensus 238 ~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~ 287 (590)
.|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999998887 67788899999999999999999999998875
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=4.3e-23 Score=183.95 Aligned_cols=125 Identities=28% Similarity=0.371 Sum_probs=78.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHH
Q 007778 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271 (590)
Q Consensus 192 ~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~ 271 (590)
..|.||||+|+..|+.+++++|++.+.+ .+..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAF 89 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 3455666666666666666666666555 3445566666666666666666666666666665 4556666666666666
Q ss_pred cCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCC
Q 007778 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 319 (590)
Q Consensus 272 ~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~ 319 (590)
.|+.+++++|+++|++++. .|.+|+||||+|+..|+.+++++|++.|
T Consensus 90 ~~~~~~v~~Ll~~g~~~~~-~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IGHLEIAEVLLKHGADVNA-QDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHcCCCCcC-cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 6666666666666666554 3666666666666666666666666543
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=1e-22 Score=181.56 Aligned_cols=127 Identities=23% Similarity=0.307 Sum_probs=106.7
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHH
Q 007778 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234 (590)
Q Consensus 155 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~ 234 (590)
....|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHL 86 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHH
Confidence 345678889999999999999998887 556777888888999999999999999999988877 55678888999999
Q ss_pred HHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcC
Q 007778 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD 285 (590)
Q Consensus 235 Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~ 285 (590)
|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|+++|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999988887 677888999999999999999999988765
No 91
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=204.35 Aligned_cols=142 Identities=19% Similarity=0.210 Sum_probs=122.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhccCCCCccc-----cCCCCCcHHHHHHHc---CChhHHHHhhhcCCchhhhhccCCch
Q 007778 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMT-----TDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLAKIARNNGKT 264 (590)
Q Consensus 193 ~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~-----~d~~g~TpLh~Aa~~---g~~eiv~~LL~~g~~~~~~~d~~g~t 264 (590)
.+.++|+.|+..|+.+.++.|++.++++... .|..|+||||+|+.. |+.+++++|+++|+++ +..|.+|.|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T 228 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 228 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence 3457899999999999999999999885432 688999999999997 8999999999999997 778999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCc
Q 007778 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 343 (590)
Q Consensus 265 pLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~ 343 (590)
|||+|+..|+.+++++|+++|++++. +|.+|+||||+|+..|+.+++++|++.+++ .|.||||+|+..|+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCCSC-CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence 99999999999999999999999986 599999999999999999999999987653 689999999998864
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=9.5e-23 Score=181.78 Aligned_cols=127 Identities=24% Similarity=0.335 Sum_probs=86.1
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHH
Q 007778 189 IPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268 (590)
Q Consensus 189 ~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~ 268 (590)
.+|.+|.||||+|+..|+.+++++|++.+.+ .+..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence 4556667777777777777777777766665 4456667777777777777777777777777765 5566677777777
Q ss_pred HHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcC
Q 007778 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 318 (590)
Q Consensus 269 Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~ 318 (590)
|+..|+.+++++|+++|++++. .|..|+||||+|+..+..+++++|.+.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTC-CCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 7777777777777777777665 377777777777776666666655544
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1.5e-22 Score=190.06 Aligned_cols=141 Identities=21% Similarity=0.207 Sum_probs=116.9
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHH
Q 007778 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA 235 (590)
Q Consensus 156 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~A 235 (590)
+..|.||||+|+..|+.++++.|++ +.+++..|.+|.||||+|+..|+.+++++|++.++++....+..|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 4578899999999999999999987 4467778888999999999999999999999988884433338889999999
Q ss_pred HHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHH
Q 007778 236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315 (590)
Q Consensus 236 a~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~L 315 (590)
+..|+.+++++|+++|+++ +..|.+|.||||+|+..++ ...+.++|++|+..|+.+++++|
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHHHH
Confidence 9999999999999998887 6788889999999987432 24577899999999999999988
Q ss_pred hcC
Q 007778 316 IRP 318 (590)
Q Consensus 316 l~~ 318 (590)
.++
T Consensus 179 ~~~ 181 (183)
T 3deo_A 179 EGQ 181 (183)
T ss_dssp HTC
T ss_pred HHh
Confidence 764
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=1.8e-22 Score=198.77 Aligned_cols=169 Identities=18% Similarity=0.182 Sum_probs=136.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 007778 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (590)
Q Consensus 120 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh 199 (590)
+.+++.+++..|+.+.+..+.... ...+..|.||||+|+..|+.++++.|++ +.+++..|.+|.||||
T Consensus 15 ~~~~~l~~~~~g~~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~ 82 (244)
T 3ui2_A 15 GAMEYLIEWKDGHSPSWVPSSYIA---------ADVVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALL 82 (244)
T ss_dssp TEEEEEEEESSCCCCEEEEGGGSC---------HHHHHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHH
T ss_pred CccHHHHHHHcCCCcccccccccc---------cccccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHH
Confidence 445555555555544433322221 2234578999999999999999999998 3567888999999999
Q ss_pred HHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHH
Q 007778 200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK 279 (590)
Q Consensus 200 ~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~ 279 (590)
+|+..|+.+++++|++.++++....+..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..+
T Consensus 83 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~------ 155 (244)
T 3ui2_A 83 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL------ 155 (244)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH------
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH------
Confidence 9999999999999999999854444488999999999999999999999999997 778999999999998632
Q ss_pred HHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCC
Q 007778 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 319 (590)
Q Consensus 280 ~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~ 319 (590)
.+..+.||||+|+..|+.+++++|++..
T Consensus 156 ------------~~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 156 ------------KTTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp ------------TTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------hccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 2467899999999999999999999753
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=1.9e-21 Score=182.50 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=124.5
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC-CCCC
Q 007778 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGY 195 (590)
Q Consensus 117 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~ 195 (590)
+..|.||||+|++.|+.++++.|++ +.+ ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+ .+|.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~ 111 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD------VDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGL 111 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCC
Confidence 4567899999999999999999998 443 678899999999999999999999999998 56676677 8899
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCH
Q 007778 196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 275 (590)
Q Consensus 196 t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~ 275 (590)
||||+|+..|+.+++++|++.+++ .+..|..|+||||+|+..++. ..+.+||++|+..|+.
T Consensus 112 tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~ 172 (183)
T 3deo_A 112 TALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLE 172 (183)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHH
T ss_pred CHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHH
Confidence 999999999999999999999988 667899999999999874322 4568999999999999
Q ss_pred HHHHHHHhc
Q 007778 276 EVVKALVSK 284 (590)
Q Consensus 276 eiv~~Ll~~ 284 (590)
+++++|.++
T Consensus 173 ~i~~~L~~~ 181 (183)
T 3deo_A 173 KVINVLEGQ 181 (183)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999999875
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=3.2e-22 Score=178.33 Aligned_cols=129 Identities=26% Similarity=0.342 Sum_probs=105.2
Q ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHH
Q 007778 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALH 233 (590)
Q Consensus 154 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh 233 (590)
.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHH
Confidence 4577888888888888888888888886 556777888888899999988888999988888877 5567888889999
Q ss_pred HHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCC
Q 007778 234 TAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDP 286 (590)
Q Consensus 234 ~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~ 286 (590)
+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|.+.++
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 999999999999999888887 7778889999999988888888877766543
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=1.8e-21 Score=191.72 Aligned_cols=142 Identities=19% Similarity=0.165 Sum_probs=126.2
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC-CCCCc
Q 007778 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGYD 196 (590)
Q Consensus 118 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t 196 (590)
..|.||||+||+.|+.++++.|++ +.+ ++.+|..|.||||+|+..|+.++|++|+++ +.+++..+ ..|.|
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t 113 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRD------VDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLT 113 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCC------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCC------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCC
Confidence 467899999999999999999998 543 678899999999999999999999999998 56676677 88999
Q ss_pred HHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHH
Q 007778 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 276 (590)
Q Consensus 197 ~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~e 276 (590)
|||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..+ ....+.||||+|+..|+.+
T Consensus 114 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~ 174 (244)
T 3ui2_A 114 ALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGLEK 174 (244)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcChHH
Confidence 99999999999999999999988 6678999999999998632 2356899999999999999
Q ss_pred HHHHHHhcCCC
Q 007778 277 VVKALVSKDPS 287 (590)
Q Consensus 277 iv~~Ll~~~~~ 287 (590)
++++|++++.+
T Consensus 175 iv~~L~~~~~~ 185 (244)
T 3ui2_A 175 VINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHEE
T ss_pred HHHHHHHhccc
Confidence 99999987543
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=199.22 Aligned_cols=140 Identities=19% Similarity=0.137 Sum_probs=120.4
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhcCCcccccc------CCCCCCcHHHHHHHc---CCHHHHHHHhccCCCCccccCCCCC
Q 007778 159 GETPLYVAAESGHALIVEEMLQHMNLETASI------PARNGYDSFHVAAKQ---GHLEVLKELLGEFPNLVMTTDLSCS 229 (590)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~------~~~~g~t~Lh~Aa~~---g~~~iv~~LL~~~~~~~~~~d~~g~ 229 (590)
+.++||.|+..|+.+.++.|++. +.+++. .+..|.||||+|+.. |+.+++++|++.+++ ++..|..|+
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGN 227 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCC
Confidence 45779999999999999999987 444444 588999999999997 899999999999988 667899999
Q ss_pred cHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCH
Q 007778 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 309 (590)
Q Consensus 230 TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~ 309 (590)
||||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence 9999999999999999999999998 78899999999999999999999999998764 589999999998864
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.6e-21 Score=170.40 Aligned_cols=107 Identities=28% Similarity=0.345 Sum_probs=48.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcC
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g 273 (590)
|.||||+|+..|+.++++.|++.+++ .+..|..|+||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcC
Confidence 33444444444444444444444443 2333444444444444444444444444444443 334444444444444444
Q ss_pred CHHHHHHHHhcCCCCccccCCCCCCHHHHH
Q 007778 274 HLEVVKALVSKDPSTGFRTDKKGQTALHMA 303 (590)
Q Consensus 274 ~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A 303 (590)
+.+++++|+++|++++. +|.+|+||||+|
T Consensus 85 ~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A 113 (123)
T 3aaa_C 85 HVSCVKLLLSKGADKTV-KGPDGLTAFEAT 113 (123)
T ss_dssp CHHHHHHHHHTTCCTTC-CCTTSCCHHHHC
T ss_pred CHHHHHHHHHcCCCCCC-cCCCCCCHHHHh
Confidence 44444444444444433 244444444444
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=8.7e-22 Score=190.63 Aligned_cols=125 Identities=30% Similarity=0.352 Sum_probs=60.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhc-CCchhhhhccCCchHHHHHHHc
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIARNNGKTVLHSAARM 272 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~-g~~~~~~~d~~g~tpLh~Aa~~ 272 (590)
|.||||+|+..|+.++++.|++.+.+ ++..|..|+||||+|+..|+.+++++|++. |+++ +..|..|.||||+|+..
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWK 150 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHH
T ss_pred cccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHc
Confidence 34444444444444444444444433 333444555555555555555555555554 4443 44455555555555555
Q ss_pred CCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCc
Q 007778 273 GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321 (590)
Q Consensus 273 g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~ 321 (590)
|+.+++++|+++|++++. +|.+|+||||+|+..++.++++.|++.++.
T Consensus 151 ~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 151 GYADIVQLLLAKGARTDL-RNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp TCHHHHHHHHHHTCCSCC-CCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred CCHHHHHHHHHcCCCCcc-ccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 555555555555555544 355556666666555555555555555443
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=6.6e-21 Score=166.50 Aligned_cols=111 Identities=23% Similarity=0.267 Sum_probs=102.9
Q ss_pred CCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHH
Q 007778 225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 304 (590)
Q Consensus 225 d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~ 304 (590)
+..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++. +|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHH
Confidence 467889999999999999999999999997 77899999999999999999999999999999886 5999999999999
Q ss_pred hCCCHHHHHHHhcCCCcccccccCCCCCHHHHHH
Q 007778 305 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338 (590)
Q Consensus 305 ~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~ 338 (590)
..|+.+++++|++.++++ +.+|.+|+||||+|.
T Consensus 82 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATD 114 (123)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCC
T ss_pred HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhC
Confidence 999999999999999886 899999999999994
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.84 E-value=1.4e-21 Score=189.11 Aligned_cols=135 Identities=20% Similarity=0.244 Sum_probs=114.0
Q ss_pred hcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhcc-CCCCccccCCCCCc
Q 007778 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGE-FPNLVMTTDLSCST 230 (590)
Q Consensus 152 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~-~~~~~~~~d~~g~T 230 (590)
++..+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++. +.+ .+..|..|+|
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~t 142 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDT 142 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCC
T ss_pred ccccccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCC
Confidence 345577899999999999999999999997 567788899999999999999999999999998 665 6788999999
Q ss_pred HHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 007778 231 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF 290 (590)
Q Consensus 231 pLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~ 290 (590)
|||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+.++++.|++.+++...
T Consensus 143 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence 999999999999999999999997 78899999999999999999999999999887654
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=1.4e-20 Score=188.92 Aligned_cols=195 Identities=20% Similarity=0.189 Sum_probs=144.5
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 007778 116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY 195 (590)
Q Consensus 116 ~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~ 195 (590)
.|..+.++|+.+...|+....+.+....+... ....+ .+.... .....-..+++.... ............
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~----~~kP~-~~s~~~----~~~~fI~aKYl~~~f-~~~~~~~~~~~l 131 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSED----PVKPN-PGSDMI----ARKDYITAKYMERRY-ARKKHADTAAKL 131 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSS----CCSCC-TTCCHH----HHHHHHHHHHTTCTT-SCCCSSSHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhh----cCCCC-CCCCHH----HHHHHHHHHHHHhhc-ccccccccchhh
Confidence 46788899999999999877665543322110 00111 111221 111111222333321 111111222345
Q ss_pred cHHHHHHHcCCHHHHHHHhccCCCCc-----cccCCCCCcHHHHHHHc---CChhHHHHhhhcCCchhhhhccCCchHHH
Q 007778 196 DSFHVAAKQGHLEVLKELLGEFPNLV-----MTTDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLAKIARNNGKTVLH 267 (590)
Q Consensus 196 t~Lh~Aa~~g~~~iv~~LL~~~~~~~-----~~~d~~g~TpLh~Aa~~---g~~eiv~~LL~~g~~~~~~~d~~g~tpLh 267 (590)
++|+.|+..|+.+.++.+++.+++.. ...|..|+||||+|+.. |+.+++++|+++|+++ +..|..|.||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence 78999999999999999999998753 34488899999999999 8999999999999997 778999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcc
Q 007778 268 SAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 322 (590)
Q Consensus 268 ~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~ 322 (590)
+|+..|+.+++++|+++|++++. +|.+|+||||+|+..|+.+++++|++.++..
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCC-ccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999987 4999999999999999999999999987643
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=1.4e-19 Score=181.63 Aligned_cols=192 Identities=20% Similarity=0.176 Sum_probs=143.9
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHH
Q 007778 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234 (590)
Q Consensus 155 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~ 234 (590)
.|..+.++|+.+...|+..+.+++.......... +...+....+ ....-..+++...........+....++|+.
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~-kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~ 136 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPV-KPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCE 136 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCC-SCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcC-CCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence 5778889999999999988777665432111111 1111112211 1122223344443332222222234579999
Q ss_pred HHHcCChhHHHHhhhcCCchhh-----hhccCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhC
Q 007778 235 AAAQGHIDVVNFLLEIDSNLAK-----IARNNGKTVLHSAARM---GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG 306 (590)
Q Consensus 235 Aa~~g~~eiv~~LL~~g~~~~~-----~~d~~g~tpLh~Aa~~---g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~ 306 (590)
|+..|+.+.+..+++.|.++.. ..|..|.||||+|+.. |+.+++++|+++|++++. +|..|+||||+|+..
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~-~d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCLT 215 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHHHHHHHT
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc-cCCCCCCHHHHHHHc
Confidence 9999999999999999998632 3378899999999999 899999999999999986 499999999999999
Q ss_pred CCHHHHHHHhcCCCcccccccCCCCCHHHHHHHcCCchhhhcccccc
Q 007778 307 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQEAGAAHSKD 353 (590)
Q Consensus 307 g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~~~~~l~~~~ 353 (590)
|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+.+..+....
T Consensus 216 g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 216 DNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999999887 999999999999999999999887775443
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=2e-19 Score=195.69 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=114.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCCccc-----cCCCCCcHHHHHHH---cCChhHHHHhhhcCCchhhhhccCCchH
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMT-----TDLSCSTALHTAAA---QGHIDVVNFLLEIDSNLAKIARNNGKTV 265 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~-----~d~~g~TpLh~Aa~---~g~~eiv~~LL~~g~~~~~~~d~~g~tp 265 (590)
..+.||.|+..|+.++++.|++.++++... .|..|+||||+|+. .|+.+++++|+++|+++ +..|.+|+||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcH
Confidence 337799999999999999999999884322 27899999999966 89999999999999998 7889999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCcccccccCCCCCHHHHHHHc
Q 007778 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340 (590)
Q Consensus 266 Lh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~ 340 (590)
||+|+..|+.+++++|+++|++++.. |.+|+||||+|+..|+.+++++|+++|++. +. ||+|.+...
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-~~------~~~h~~~~~ 277 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEELLEQAQAGT-FA------FPLHVDYSW 277 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCC-CTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHhCCCC-CC------Ccceeeccc
Confidence 99999999999999999999999874 999999999999999999999999999876 33 688877654
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.1e-19 Score=189.28 Aligned_cols=148 Identities=22% Similarity=0.227 Sum_probs=113.4
Q ss_pred CCCCCCcHHHHHHHc-CCHHHHHHHhccCCCCccccC--CCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHH
Q 007778 190 PARNGYDSFHVAAKQ-GHLEVLKELLGEFPNLVMTTD--LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266 (590)
Q Consensus 190 ~~~~g~t~Lh~Aa~~-g~~~iv~~LL~~~~~~~~~~d--~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpL 266 (590)
.+..+.|+||.|+.. |+.++++.|++.+++ ++..| ..|.||||+|+..|+.+++++|+++|+++ +..|..|.|||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpL 272 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPL 272 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence 334566899999999 999999999999988 44555 78999999999999999999999999998 67899999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCCCHHHHHHHhcCCCc--ccccccCCCCCHHHHHHHc
Q 007778 267 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS--VLKLEDNKGNTALHIAIKK 340 (590)
Q Consensus 267 h~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~~~~--~~~~~d~~G~TpLh~A~~~ 340 (590)
|+|+..|+.+++++|+++|++++. .|.+|.||||+|+..++.+++++|+..+.. .....+..+.|+++++...
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad~~~-~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHHcCcHHHHHHHHHCcCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 999999999999999999999876 499999999999999999999999976432 1234566788888887654
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=3.3e-19 Score=147.62 Aligned_cols=91 Identities=41% Similarity=0.617 Sum_probs=61.9
Q ss_pred CCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHhCC
Q 007778 228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 307 (590)
Q Consensus 228 g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~~g 307 (590)
|+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++. +|.+|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcC
Confidence 566777777777777777777766665 55666677777777777777777777777766654 3666777777777777
Q ss_pred CHHHHHHHhcCCC
Q 007778 308 NEDIVLELIRPDP 320 (590)
Q Consensus 308 ~~~iv~~Ll~~~~ 320 (590)
+.+++++|++.|+
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 7777777776654
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=2.9e-19 Score=194.37 Aligned_cols=136 Identities=22% Similarity=0.190 Sum_probs=113.9
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhcCCccccccC------CCCCCcHHHHHHH---cCCHHHHHHHhccCCCCccccCCCCC
Q 007778 159 GETPLYVAAESGHALIVEEMLQHMNLETASIP------ARNGYDSFHVAAK---QGHLEVLKELLGEFPNLVMTTDLSCS 229 (590)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~------~~~g~t~Lh~Aa~---~g~~~iv~~LL~~~~~~~~~~d~~g~ 229 (590)
..+.||.|+..|+.++|+.||+. +.+++.. +..|.||||+|+. .|+.+++++|++.|++ ++..|..|+
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCC
Confidence 44789999999999999999998 4455544 7889999999976 9999999999999988 678899999
Q ss_pred cHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHHHHh
Q 007778 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK 305 (590)
Q Consensus 230 TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~A~~ 305 (590)
||||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|+++|++++. ||+|.+..
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~-------~~~h~~~~ 276 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTFA-------FPLHVDYS 276 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC-------Ccceeecc
Confidence 9999999999999999999999997 78899999999999999999999999999998754 68887654
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=5.3e-19 Score=146.34 Aligned_cols=91 Identities=46% Similarity=0.663 Sum_probs=52.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcC
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g 273 (590)
|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence 45555555555555555555555555 3445555666666666666666666666666554 445555666666666666
Q ss_pred CHHHHHHHHhcCC
Q 007778 274 HLEVVKALVSKDP 286 (590)
Q Consensus 274 ~~eiv~~Ll~~~~ 286 (590)
+.+++++|+++|+
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 6666666665554
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=3.7e-19 Score=185.32 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=116.1
Q ss_pred CCCCCcHHHHHHHh-CCHHHHHHHHhcCCccccccCC--CCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHH
Q 007778 156 NQEGETPLYVAAES-GHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL 232 (590)
Q Consensus 156 n~~g~TpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~~~--~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpL 232 (590)
+..+.||||.|+.. |+.++++.||++ +.+++..+ .+|.||||+|+..|+.+++++|++.+++ ++..|..|+|||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL 272 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL 272 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 44567899999999 999999999997 55666666 8899999999999999999999999988 667899999999
Q ss_pred HHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCcc--ccCCCCCCHHHHHHhC
Q 007778 233 HTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF--RTDKKGQTALHMAVKG 306 (590)
Q Consensus 233 h~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~--~~d~~G~T~Lh~A~~~ 306 (590)
|+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|+..+..... ..+..+.|+++++...
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 9999999999999999999998 78899999999999999999999999987643221 2356788888877654
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=3.5e-19 Score=153.46 Aligned_cols=109 Identities=30% Similarity=0.369 Sum_probs=83.2
Q ss_pred ccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHHHH
Q 007778 223 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM 302 (590)
Q Consensus 223 ~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~Lh~ 302 (590)
.+|.+|+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++. .|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-CCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHH
Confidence 35677788888888888888888888877776 56677788888888888888888888888877765 47788888888
Q ss_pred HHhCCCHHHHHHHhcCCCcccccccCCCCCHH
Q 007778 303 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTAL 334 (590)
Q Consensus 303 A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpL 334 (590)
|+..++.+++++|+++|+++ +.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 88888888888888887776 77777777763
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=3.5e-18 Score=147.13 Aligned_cols=107 Identities=28% Similarity=0.404 Sum_probs=52.4
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHH
Q 007778 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234 (590)
Q Consensus 155 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~ 234 (590)
+|.+|+||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.+++ .+..|..|+||||+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL 81 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence 344555555555555555555555554 333444445555555555555555555555555444 33444445555555
Q ss_pred HHHcCChhHHHHhhhcCCchhhhhccCCchH
Q 007778 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTV 265 (590)
Q Consensus 235 Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tp 265 (590)
|+..|+.+++++|+++|+++ +..+..|.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence 55555555555555555554 3344444443
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=1.6e-16 Score=135.79 Aligned_cols=93 Identities=34% Similarity=0.417 Sum_probs=63.8
Q ss_pred ccccCCCCCcHHHHHHHcCChhHHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCHH
Q 007778 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300 (590)
Q Consensus 221 ~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~L 300 (590)
....|.+|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++. .|..|+|||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl 94 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAF 94 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCcHH
Confidence 3345667777777777777777777777777765 55667777777777777777777777777777665 367777777
Q ss_pred HHHHhCCCHHHHHHH
Q 007778 301 HMAVKGQNEDIVLEL 315 (590)
Q Consensus 301 h~A~~~g~~~iv~~L 315 (590)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 777777777777665
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.62 E-value=1.2e-15 Score=130.34 Aligned_cols=93 Identities=28% Similarity=0.328 Sum_probs=53.0
Q ss_pred hcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHhccCCCCccccCCCCCcH
Q 007778 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231 (590)
Q Consensus 152 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~Tp 231 (590)
....|.+|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.+++ .+..|..|+||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tp 93 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTA 93 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcH
Confidence 345556666666666666666666666665 344555555666666666666666666666665555 34455556666
Q ss_pred HHHHHHcCChhHHHHh
Q 007778 232 LHTAAAQGHIDVVNFL 247 (590)
Q Consensus 232 Lh~Aa~~g~~eiv~~L 247 (590)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 6666666666655554
No 115
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=68.96 E-value=3.4 Score=27.79 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007778 519 HSRWLAVSATVIGGTIMLTTIGSMCYCVI 547 (590)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (590)
.+...+|...++|+++++.++...+++++
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 45566788888887777666654444443
No 116
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=65.63 E-value=11 Score=28.93 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007778 520 SRWLAVSATVIGGTIMLTTIGSMCYCVI 547 (590)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (590)
....+|+..+++++++++++..+++.++
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888777777766655443
No 117
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=57.04 E-value=3.2 Score=27.94 Aligned_cols=28 Identities=7% Similarity=0.199 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007778 520 SRWLAVSATVIGGTIMLTTIGSMCYCVI 547 (590)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (590)
+...+|...++|+++++.++...+++++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHh
Confidence 3445677778877666666654444443
No 118
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=51.83 E-value=18 Score=24.27 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=7.2
Q ss_pred chhHHHHHHHHH
Q 007778 520 SRWLAVSATVIG 531 (590)
Q Consensus 520 ~~~~~~~~~~~~ 531 (590)
+...+|...++|
T Consensus 9 ~~~~~Ia~~vVG 20 (44)
T 2jwa_A 9 SPLTSIISAVVG 20 (44)
T ss_dssp CSHHHHHHHHHH
T ss_pred CcccchHHHHHH
Confidence 344556666777
No 119
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=42.44 E-value=72 Score=21.13 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007778 520 SRWLAVSATVIGGTIMLTTIGSMCYCVI 547 (590)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (590)
....+++..++++++++.++..+++.+.
T Consensus 7 ~n~~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 7 PDILVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777665554443
No 120
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=31.55 E-value=2.7e+02 Score=24.58 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=78.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 007778 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (590)
Q Consensus 120 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh 199 (590)
-++-+-.|...|+++....+.+...... .-.+-=..|...|+.++++.-..+.+ |.. ..+.
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l~~~~----------~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D~~--~L~~ 68 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKLNDSI----------TWERLIQEALAQGNASLAEMIYQTQH-------SFD--KLSF 68 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHCCHH----------HHHHHHHHHHHTTCHHHHHHHHHHTT-------CHH--HHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHhCCHH----------HHHHHHHHHHHcCChHHHHHHHHHhC-------CHH--HHHH
Confidence 3567888999999998888775432110 01223346677888888888877621 111 3344
Q ss_pred HHHHcCCHHHHHHHhccCCCCccccCCCCCcHHHHHHHcCChh-HHHHhhhcCCchhhhhccCCchHHHHHHHcCCHHHH
Q 007778 200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID-VVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278 (590)
Q Consensus 200 ~Aa~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~g~~e-iv~~LL~~g~~~~~~~d~~g~tpLh~Aa~~g~~eiv 278 (590)
+....|+.+-++.+.+.. ....+...+.|.+...|+++ .+++|.+.|.-. -+...|-.+|..++.
T Consensus 69 Ly~~tg~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~---------eA~~~A~t~g~~~~a 134 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP---------LAYAVAKANGDEAAA 134 (177)
T ss_dssp HHHHHTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH---------HHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH---------HHHHHHHHcCcHHHH
Confidence 445567777766664321 11223345677777777754 556665544322 245667778888888
Q ss_pred HHHHhc
Q 007778 279 KALVSK 284 (590)
Q Consensus 279 ~~Ll~~ 284 (590)
+.|++.
T Consensus 135 ~~~~~~ 140 (177)
T 3mkq_B 135 SAFLEQ 140 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 121
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=27.35 E-value=60 Score=32.25 Aligned_cols=54 Identities=9% Similarity=-0.082 Sum_probs=27.2
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccc-ccCCCCCCcHHHHHHHcCCHH
Q 007778 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETA-SIPARNGYDSFHVAAKQGHLE 208 (590)
Q Consensus 155 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~-~~~~~~g~t~Lh~Aa~~g~~~ 208 (590)
.|..|+..+.-....|..+....+++...+... -..+..|.-.+..+......+
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~ 123 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSD 123 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHH
Confidence 466666666666666666666666554221111 123344444444444444443
No 122
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=26.48 E-value=89 Score=21.87 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007778 521 RWLAVSATVIGGTIMLTTIG 540 (590)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~ 540 (590)
.|..|.+.++++++++.++.
T Consensus 8 p~WiIi~svl~GLLLL~Lii 27 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLI 27 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 45556667777766665554
No 123
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=25.29 E-value=94 Score=30.75 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=118.2
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhHhhcccCCCCCcHHHHHHHhCCHHHHHHHHhcCCccc-cccCCCC
Q 007778 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET-ASIPARN 193 (590)
Q Consensus 115 ~~~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~-~~~~~~~ 193 (590)
..|..|+..+......|+.+....+++..... ..+ -..+..|.-.+.-+......+-...+++...+.. .-..|.+
T Consensus 68 ~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~-~~~--l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~ 144 (351)
T 3gvo_A 68 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGH-VLP--LALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQN 144 (351)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTC-HHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTT
T ss_pred HhChhhhHHHHHHHhhCCHHHHHHHHHHHHhh-HHH--HhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhh
Confidence 35888888888888888888877777653321 111 2357788888888888887776666665422211 1235566
Q ss_pred CCcHHHHHHHcCCHHHHHHHhccCCCC--ccccCCCCCcHHHHHHHcCChh----HHHHhhhcCCchhhhhccCCchHHH
Q 007778 194 GYDSFHVAAKQGHLEVLKELLGEFPNL--VMTTDLSCSTALHTAAAQGHID----VVNFLLEIDSNLAKIARNNGKTVLH 267 (590)
Q Consensus 194 g~t~Lh~Aa~~g~~~iv~~LL~~~~~~--~~~~d~~g~TpLh~Aa~~g~~e----iv~~LL~~g~~~~~~~d~~g~tpLh 267 (590)
|+..+......+..+..+.+++.-... .-..+..|...+..+......+ +++.|..+ -..-..|..|...+.
T Consensus 145 Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~--~~~L~~d~~Gn~ViQ 222 (351)
T 3gvo_A 145 GNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH--TEQLVQDQYGNYVIQ 222 (351)
T ss_dssp HHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTT--HHHHHTSTTHHHHHH
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhh--HHhcCCCchHHHHHH
Confidence 666666665555544333333321110 1112344444444444433322 33333321 112345777888888
Q ss_pred HHHHcCCHHHHHHHHhcCCC--CccccCCCCCCHHHHHHhCCCHH----HHHHHhcCC--C---cccccccCCCCCHHHH
Q 007778 268 SAARMGHLEVVKALVSKDPS--TGFRTDKKGQTALHMAVKGQNED----IVLELIRPD--P---SVLKLEDNKGNTALHI 336 (590)
Q Consensus 268 ~Aa~~g~~eiv~~Ll~~~~~--~~~~~d~~G~T~Lh~A~~~g~~~----iv~~Ll~~~--~---~~~~~~d~~G~TpLh~ 336 (590)
.+...+..+..+.+++.-.. .....++.|...+.-+...+..+ +++.++... + -..-..|..||..+..
T Consensus 223 ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~ 302 (351)
T 3gvo_A 223 HVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK 302 (351)
T ss_dssp HHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHH
T ss_pred HHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHH
Confidence 88887777666666654211 11124566666666666655543 344444321 0 0112346666666665
Q ss_pred HHHcC
Q 007778 337 AIKKG 341 (590)
Q Consensus 337 A~~~g 341 (590)
+...+
T Consensus 303 ~L~~~ 307 (351)
T 3gvo_A 303 MIDMA 307 (351)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 55443
No 124
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.20 E-value=99 Score=21.64 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007778 521 RWLAVSATVIGGTIMLTTIG 540 (590)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~ 540 (590)
.|..|.+.++++++++.++.
T Consensus 11 p~wiIi~svl~GLllL~li~ 30 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILV 30 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 45556666676666655543
No 125
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.29 E-value=2.8e+02 Score=27.07 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007778 492 VINKLMWLACLFISIAFISLTYVV 515 (590)
Q Consensus 492 ~~~~~~~~~~~~~~~af~~~~~~~ 515 (590)
+...+-+++.+++..+|++|+|=+
T Consensus 278 ~mk~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 278 IMKILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 445567788889999999999955
No 126
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=21.33 E-value=1.5e+02 Score=19.59 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007778 521 RWLAVSATVIGGTIMLTTIG 540 (590)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~ 540 (590)
.|..|.+.++++++++.++.
T Consensus 9 p~wiIi~s~l~GLllL~li~ 28 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILV 28 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655543
No 127
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.63 E-value=3.3e+02 Score=24.22 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=9.4
Q ss_pred hHHHHhHHHHHHHHHH
Q 007778 456 IFFVFDSLALFISLAV 471 (590)
Q Consensus 456 ~F~~~n~~a~~~S~~~ 471 (590)
+|+++-.++..+++.+
T Consensus 4 ~F~~~a~~~i~~al~v 19 (184)
T 3rko_J 4 AFYICGLIAILATLRV 19 (184)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666666666666543
Done!