Query 007779
Match_columns 590
No_of_seqs 378 out of 2506
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 15:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09522 bifunctional glutamin 100.0 2E-107 4E-112 901.7 45.0 480 50-584 3-529 (531)
2 PRK14607 bifunctional glutamin 100.0 9E-105 2E-109 884.8 46.9 484 50-589 1-531 (534)
3 COG0547 TrpD Anthranilate phos 100.0 2.3E-82 5E-87 661.3 36.5 335 213-588 2-338 (338)
4 PLN02641 anthranilate phosphor 100.0 2.9E-79 6.3E-84 643.9 34.7 332 215-590 4-337 (343)
5 PRK07394 hypothetical protein; 100.0 4.4E-78 9.6E-83 636.0 36.4 329 214-583 4-341 (342)
6 PRK00188 trpD anthranilate pho 100.0 2.2E-74 4.7E-79 608.9 35.2 335 213-589 1-338 (339)
7 TIGR01245 trpD anthranilate ph 100.0 1.1E-73 2.3E-78 601.5 32.5 326 219-585 1-330 (330)
8 PRK08136 glycosyl transferase 100.0 5.8E-71 1.3E-75 575.0 30.6 306 213-564 1-316 (317)
9 PRK09071 hypothetical protein; 100.0 3.1E-68 6.6E-73 556.7 31.7 308 213-573 2-318 (323)
10 PF00591 Glycos_transf_3: Glyc 100.0 2.5E-57 5.4E-62 461.1 16.4 248 294-576 2-252 (252)
11 PRK06078 pyrimidine-nucleoside 100.0 1E-54 2.2E-59 466.3 31.2 302 213-588 1-318 (434)
12 KOG1438 Anthranilate phosphori 100.0 1.9E-54 4.2E-59 428.2 16.6 295 256-588 52-371 (373)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 1.6E-50 3.5E-55 431.1 28.8 298 216-588 2-316 (405)
14 PRK04350 thymidine phosphoryla 100.0 3.5E-49 7.7E-54 427.3 29.7 311 190-588 66-394 (490)
15 COG0512 PabA Anthranilate/para 100.0 3.8E-48 8.2E-53 371.5 13.8 158 49-221 2-190 (191)
16 PRK05820 deoA thymidine phosph 100.0 8E-45 1.7E-49 390.5 32.4 307 213-588 2-322 (440)
17 TIGR02645 ARCH_P_rylase putati 100.0 3.1E-43 6.6E-48 380.8 34.0 322 190-588 71-399 (493)
18 TIGR02643 T_phosphoryl thymidi 100.0 7.1E-43 1.5E-47 373.8 30.0 306 215-588 3-321 (437)
19 TIGR03327 AMP_phos AMP phospho 100.0 8.9E-42 1.9E-46 369.5 33.4 322 190-588 72-399 (500)
20 KOG0026 Anthranilate synthase, 100.0 5.7E-41 1.2E-45 311.0 12.1 157 50-221 20-213 (223)
21 PRK08007 para-aminobenzoate sy 100.0 5.9E-35 1.3E-39 284.6 13.0 155 51-220 2-186 (187)
22 PLN02889 oxo-acid-lyase/anthra 100.0 8.8E-35 1.9E-39 334.9 13.9 167 49-223 82-336 (918)
23 PRK07649 para-aminobenzoate/an 100.0 5E-32 1.1E-36 265.8 13.3 157 51-222 2-188 (195)
24 TIGR00566 trpG_papA glutamine 100.0 2.1E-31 4.5E-36 259.9 13.0 156 51-221 2-188 (188)
25 COG0213 DeoA Thymidine phospho 100.0 9E-30 2E-34 267.3 24.7 309 213-588 2-319 (435)
26 PRK06774 para-aminobenzoate sy 100.0 1.4E-30 2.9E-35 254.4 12.9 155 51-220 2-190 (191)
27 PLN02335 anthranilate synthase 100.0 1.2E-29 2.7E-34 253.6 13.9 159 49-222 19-213 (222)
28 CHL00101 trpG anthranilate syn 100.0 1.3E-29 2.7E-34 247.7 13.6 155 51-220 2-187 (190)
29 PRK05637 anthranilate synthase 100.0 1.4E-29 3.1E-34 250.8 13.7 158 50-224 3-207 (208)
30 PRK06895 putative anthranilate 100.0 3.2E-29 7E-34 244.6 14.1 155 49-220 2-187 (190)
31 PRK08857 para-aminobenzoate sy 100.0 4.2E-29 9E-34 244.5 13.2 156 51-221 2-192 (193)
32 KOG1224 Para-aminobenzoate (PA 100.0 1.5E-28 3.3E-33 261.1 9.8 166 47-220 13-215 (767)
33 PRK05670 anthranilate synthase 99.9 3.2E-27 6.9E-32 230.4 13.9 156 51-221 2-187 (189)
34 PLN02771 carbamoyl-phosphate s 99.9 1.2E-27 2.6E-32 256.0 11.4 136 60-211 256-406 (415)
35 COG0505 CarA Carbamoylphosphat 99.9 6E-27 1.3E-31 242.2 11.5 158 49-222 180-362 (368)
36 PRK07765 para-aminobenzoate sy 99.9 5.5E-26 1.2E-30 226.2 14.5 165 49-226 1-196 (214)
37 TIGR01368 CPSaseIIsmall carbam 99.9 6.7E-26 1.5E-30 240.5 13.7 158 48-222 173-356 (358)
38 TIGR01823 PabB-fungal aminodeo 99.9 6.1E-26 1.3E-30 260.9 13.9 166 47-223 4-205 (742)
39 TIGR01815 TrpE-clade3 anthrani 99.9 2.4E-25 5.2E-30 254.2 14.7 164 46-225 514-711 (717)
40 PRK12564 carbamoyl phosphate s 99.9 2.4E-25 5.3E-30 236.6 13.6 157 48-220 177-358 (360)
41 CHL00197 carA carbamoyl-phosph 99.9 5.3E-25 1.1E-29 234.9 15.0 159 48-222 192-374 (382)
42 PRK12838 carbamoyl phosphate s 99.9 4.7E-25 1E-29 233.7 13.0 159 49-223 168-351 (354)
43 cd01743 GATase1_Anthranilate_S 99.9 6.4E-25 1.4E-29 212.9 12.8 153 51-218 1-183 (184)
44 PRK13566 anthranilate synthase 99.9 7E-25 1.5E-29 250.7 14.6 162 44-222 522-718 (720)
45 cd01744 GATase1_CPSase Small c 99.9 2.7E-24 5.8E-29 207.9 11.9 135 60-210 14-164 (178)
46 PF00117 GATase: Glutamine ami 99.9 3.9E-24 8.4E-29 207.9 8.6 156 52-221 1-191 (192)
47 PRK00758 GMP synthase subunit 99.9 2.1E-23 4.5E-28 202.5 12.3 150 51-221 2-180 (184)
48 PLN02347 GMP synthetase 99.9 1.4E-22 3.1E-27 225.3 14.1 167 50-229 12-210 (536)
49 cd01742 GATase1_GMP_Synthase T 99.9 1.7E-22 3.8E-27 194.9 11.7 152 51-218 1-180 (181)
50 TIGR00888 guaA_Nterm GMP synth 99.9 6.8E-22 1.5E-26 192.5 12.9 155 51-222 1-184 (188)
51 PRK06490 glutamine amidotransf 99.8 1.4E-20 2.9E-25 190.5 14.4 159 48-220 7-191 (239)
52 PRK13170 hisH imidazole glycer 99.8 1.9E-20 4.2E-25 184.0 10.5 149 49-220 1-195 (196)
53 CHL00188 hisH imidazole glycer 99.8 1.9E-20 4.2E-25 185.9 10.1 148 56-221 13-209 (210)
54 cd01748 GATase1_IGP_Synthase T 99.8 1.4E-19 3.1E-24 177.6 8.4 139 60-218 16-197 (198)
55 cd01745 GATase1_2 Subgroup of 99.8 3.7E-19 8E-24 173.8 9.7 133 54-210 17-174 (189)
56 PRK13152 hisH imidazole glycer 99.8 5.6E-19 1.2E-23 174.1 11.0 142 56-220 11-200 (201)
57 PRK09065 glutamine amidotransf 99.8 1.3E-18 2.9E-23 175.8 13.2 138 61-211 30-190 (237)
58 PRK07567 glutamine amidotransf 99.8 5.2E-18 1.1E-22 172.1 17.1 142 60-213 22-196 (242)
59 PRK13181 hisH imidazole glycer 99.8 8.5E-19 1.8E-23 172.4 10.7 150 51-220 2-198 (199)
60 PRK00074 guaA GMP synthase; Re 99.8 2.5E-18 5.3E-23 191.4 14.1 164 50-229 5-197 (511)
61 KOG0370 Multifunctional pyrimi 99.8 1.5E-18 3.2E-23 194.4 12.2 160 46-224 170-354 (1435)
62 cd01741 GATase1_1 Subgroup of 99.8 3.4E-18 7.4E-23 166.1 11.6 136 60-208 18-180 (188)
63 PRK13141 hisH imidazole glycer 99.8 2.9E-18 6.3E-23 169.3 10.7 143 60-222 17-202 (205)
64 COG0518 GuaA GMP synthase - Gl 99.7 8.2E-18 1.8E-22 165.5 11.4 149 60-222 19-193 (198)
65 TIGR01855 IMP_synth_hisH imida 99.7 6.4E-18 1.4E-22 166.0 10.5 142 60-220 16-195 (196)
66 PRK11366 puuD gamma-glutamyl-g 99.7 1.1E-17 2.5E-22 170.7 11.9 128 94-222 59-244 (254)
67 PRK07053 glutamine amidotransf 99.7 6.9E-17 1.5E-21 163.0 15.6 141 60-213 21-184 (234)
68 PRK14004 hisH imidazole glycer 99.7 1.8E-17 4E-22 164.6 10.6 144 56-221 11-209 (210)
69 PRK13527 glutamine amidotransf 99.7 3.7E-17 8E-22 161.0 11.8 157 49-222 3-197 (200)
70 PRK13146 hisH imidazole glycer 99.7 2.9E-17 6.4E-22 163.0 10.3 154 49-221 2-207 (209)
71 cd01746 GATase1_CTP_Synthase T 99.7 6.2E-17 1.3E-21 163.5 10.0 145 53-209 12-220 (235)
72 PRK05665 amidotransferase; Pro 99.7 1.2E-15 2.6E-20 154.6 17.8 143 94-241 55-217 (240)
73 PRK08250 glutamine amidotransf 99.7 2.5E-16 5.3E-21 159.1 11.9 140 60-212 19-185 (235)
74 PRK13143 hisH imidazole glycer 99.7 2.6E-16 5.7E-21 155.1 10.3 152 50-221 2-197 (200)
75 PF02885 Glycos_trans_3N: Glyc 99.7 1.8E-16 4E-21 129.4 7.6 64 215-285 2-65 (66)
76 cd01747 GATase1_Glutamyl_Hydro 99.6 4.6E-15 1E-19 153.1 7.8 139 60-209 27-214 (273)
77 PRK13525 glutamine amidotransf 99.5 3E-14 6.4E-19 139.5 10.6 150 55-222 11-187 (189)
78 PRK13142 hisH imidazole glycer 99.5 5.9E-14 1.3E-18 137.5 10.9 141 56-220 11-186 (192)
79 PLN02617 imidazole glycerol ph 99.5 2.5E-13 5.3E-18 151.7 12.6 157 48-223 6-211 (538)
80 TIGR00337 PyrG CTP synthase. C 99.4 2.4E-13 5.3E-18 149.8 8.9 110 94-209 341-508 (525)
81 cd01749 GATase1_PB Glutamine A 99.4 1.4E-12 3E-17 127.0 9.1 140 60-217 15-180 (183)
82 TIGR03800 PLP_synth_Pdx2 pyrid 99.4 2.2E-12 4.7E-17 125.9 9.7 138 60-215 16-178 (184)
83 PF07722 Peptidase_C26: Peptid 99.3 2E-12 4.3E-17 129.3 6.7 139 60-208 31-217 (217)
84 PRK05380 pyrG CTP synthetase; 99.3 1.3E-11 2.8E-16 136.3 11.0 148 65-223 318-527 (533)
85 COG0118 HisH Glutamine amidotr 99.3 1.6E-11 3.5E-16 119.6 9.3 149 55-222 12-203 (204)
86 KOG1622 GMP synthase [Nucleoti 99.2 4.4E-11 9.5E-16 127.1 10.1 164 96-264 59-253 (552)
87 KOG3179 Predicted glutamine sy 99.2 1.6E-10 3.4E-15 112.0 12.5 158 94-261 57-237 (245)
88 COG2071 Predicted glutamine am 99.2 5.5E-11 1.2E-15 118.8 7.5 113 94-209 58-219 (243)
89 PLN02327 CTP synthase 99.1 1.1E-10 2.4E-15 129.3 9.4 124 94-223 360-547 (557)
90 PRK06186 hypothetical protein; 98.9 5.3E-09 1.1E-13 105.1 10.4 123 94-222 51-226 (229)
91 TIGR01737 FGAM_synth_I phospho 98.8 1E-08 2.2E-13 103.3 9.0 144 60-220 19-225 (227)
92 PRK05368 homoserine O-succinyl 98.6 1.6E-07 3.4E-12 98.3 9.9 183 41-226 29-255 (302)
93 PLN02832 glutamine amidotransf 98.5 4.5E-07 9.8E-12 92.4 9.9 67 60-145 18-89 (248)
94 PRK13526 glutamine amidotransf 98.5 5.7E-07 1.2E-11 87.4 9.0 141 60-219 19-176 (179)
95 PRK03619 phosphoribosylformylg 98.1 9.8E-06 2.1E-10 81.4 9.6 133 60-209 19-198 (219)
96 COG0504 PyrG CTP synthase (UTP 97.6 0.00012 2.7E-09 79.9 7.4 121 97-223 344-527 (533)
97 KOG0623 Glutamine amidotransfe 97.5 0.00024 5.2E-09 74.2 7.1 159 56-238 13-222 (541)
98 PF01174 SNO: SNO glutamine am 96.9 0.0052 1.1E-07 60.1 9.5 144 60-222 13-186 (188)
99 cd01740 GATase1_FGAR_AT Type 1 96.8 0.0028 6.1E-08 64.4 7.2 82 60-152 17-108 (238)
100 KOG2387 CTP synthase (UTP-ammo 96.4 0.0046 1E-07 66.9 5.5 49 97-150 364-414 (585)
101 COG0311 PDX2 Predicted glutami 96.3 0.017 3.6E-07 56.4 8.5 145 60-225 17-192 (194)
102 cd01750 GATase1_CobQ Type 1 gl 96.1 0.0064 1.4E-07 59.9 4.7 75 55-146 10-90 (194)
103 PRK01175 phosphoribosylformylg 96.0 0.013 2.7E-07 60.7 6.3 74 60-144 22-105 (261)
104 cd03130 GATase1_CobB Type 1 gl 93.9 0.094 2E-06 51.8 5.4 75 52-145 12-92 (198)
105 cd03128 GAT_1 Type 1 glutamine 93.9 0.15 3.3E-06 40.4 5.8 73 60-141 19-92 (92)
106 cd01653 GATase1 Type 1 glutami 92.8 0.3 6.6E-06 40.5 6.2 72 60-141 19-92 (115)
107 KOG1559 Gamma-glutamyl hydrola 92.1 0.13 2.8E-06 52.1 3.4 74 60-145 84-164 (340)
108 COG2313 IndA Uncharacterized e 91.3 2.1 4.5E-05 43.9 10.8 189 193-448 26-234 (310)
109 cd03131 GATase1_HTS Type 1 glu 88.9 0.48 1E-05 46.2 4.1 65 94-160 60-130 (175)
110 PRK06278 cobyrinic acid a,c-di 88.4 0.59 1.3E-05 52.5 4.9 47 94-145 34-82 (476)
111 PF04282 DUF438: Family of unk 88.2 3.2 6.9E-05 34.7 7.9 56 215-280 2-57 (71)
112 TIGR01382 PfpI intracellular p 87.5 1.6 3.4E-05 41.1 6.6 47 96-144 60-108 (166)
113 PRK00784 cobyric acid synthase 87.4 0.7 1.5E-05 52.0 4.8 71 56-145 264-342 (488)
114 cd03169 GATase1_PfpI_1 Type 1 87.1 1.6 3.5E-05 41.9 6.6 47 96-144 76-124 (180)
115 PRK05703 flhF flagellar biosyn 86.8 14 0.0003 41.1 14.3 157 215-383 142-313 (424)
116 cd03134 GATase1_PfpI_like A ty 83.7 3.3 7.2E-05 38.9 6.8 92 49-144 2-110 (165)
117 cd03132 GATase1_catalase Type 78.3 7.3 0.00016 35.7 7.0 96 46-144 1-111 (142)
118 PRK11249 katE hydroperoxidase 77.7 5.5 0.00012 47.1 7.2 111 31-144 582-707 (752)
119 PRK12724 flagellar biosynthesi 75.8 94 0.002 34.7 15.6 136 295-447 225-368 (432)
120 PF04204 HTS: Homoserine O-suc 74.8 4.3 9.4E-05 42.9 4.8 129 96-226 98-254 (298)
121 cd03146 GAT1_Peptidase_E Type 72.4 4.3 9.3E-05 40.5 4.0 72 60-145 53-131 (212)
122 COG0047 PurL Phosphoribosylfor 71.3 7.1 0.00015 39.6 5.2 72 57-144 17-97 (231)
123 PRK11889 flhF flagellar biosyn 67.2 1.2E+02 0.0025 34.0 13.7 134 294-447 242-386 (436)
124 PRK01077 cobyrinic acid a,c-di 65.7 8.8 0.00019 42.8 5.1 71 60-145 265-339 (451)
125 TIGR03499 FlhF flagellar biosy 62.6 1.1E+02 0.0024 31.8 12.3 148 215-376 116-279 (282)
126 PRK11780 isoprenoid biosynthes 62.2 29 0.00063 35.0 7.6 52 94-146 83-146 (217)
127 COG2979 Uncharacterized protei 61.1 34 0.00073 34.4 7.5 72 201-280 96-171 (225)
128 TIGR00379 cobB cobyrinic acid 56.8 15 0.00033 40.9 5.0 69 60-145 264-338 (449)
129 PRK14723 flhF flagellar biosyn 55.4 1.4E+02 0.0031 35.7 12.7 164 215-392 102-286 (767)
130 TIGR00313 cobQ cobyric acid sy 55.4 7.4 0.00016 43.8 2.2 49 94-145 282-336 (475)
131 PRK10416 signal recognition pa 55.2 1.8E+02 0.004 30.9 12.6 156 215-382 31-209 (318)
132 cd01554 EPT-like Enol pyruvate 54.8 37 0.00079 36.8 7.4 101 255-356 13-129 (408)
133 cd03133 GATase1_ES1 Type 1 glu 54.5 29 0.00062 35.0 6.0 52 94-146 80-143 (213)
134 PF13507 GATase_5: CobB/CobQ-l 53.2 8 0.00017 40.1 1.9 73 60-144 20-106 (259)
135 cd03147 GATase1_Ydr533c_like T 52.9 22 0.00047 36.2 4.9 98 46-144 17-143 (231)
136 PRK12726 flagellar biosynthesi 51.9 1.1E+02 0.0023 34.0 10.2 139 233-385 144-301 (407)
137 PRK00771 signal recognition pa 51.5 2.7E+02 0.0058 31.2 13.5 160 214-383 4-189 (437)
138 PF07685 GATase_3: CobB/CobQ-l 51.3 15 0.00032 34.8 3.3 49 95-146 6-60 (158)
139 PLN03206 phosphoribosylformylg 50.6 22 0.00047 44.9 5.3 83 47-144 1036-1142(1307)
140 TIGR01383 not_thiJ DJ-1 family 49.0 33 0.00072 32.4 5.3 49 95-144 62-112 (179)
141 PRK11574 oxidative-stress-resi 47.9 47 0.001 32.2 6.2 95 48-145 4-116 (196)
142 PRK09369 UDP-N-acetylglucosami 45.3 47 0.001 36.3 6.4 98 258-355 27-139 (417)
143 PRK12830 UDP-N-acetylglucosami 44.9 50 0.0011 36.0 6.6 99 256-355 25-138 (417)
144 TIGR01001 metA homoserine O-su 43.4 1.1E+02 0.0024 32.6 8.3 131 95-227 98-255 (300)
145 PHA00438 hypothetical protein 41.5 61 0.0013 27.6 4.9 59 215-283 22-80 (81)
146 PRK05297 phosphoribosylformylg 40.9 45 0.00097 42.3 5.9 70 60-144 1054-1140(1290)
147 TIGR01072 murA UDP-N-acetylglu 38.6 50 0.0011 35.9 5.3 99 256-355 25-138 (416)
148 cd01555 UdpNAET UDP-N-acetylgl 38.5 55 0.0012 35.3 5.6 100 256-355 14-128 (400)
149 COG1492 CobQ Cobyric acid synt 38.1 58 0.0013 36.8 5.7 72 55-144 263-341 (486)
150 PF11829 DUF3349: Protein of u 37.8 1E+02 0.0022 27.4 6.0 55 225-285 33-89 (96)
151 cd03137 GATase1_AraC_1 AraC tr 37.8 1.1E+02 0.0023 29.2 7.0 48 95-144 63-112 (187)
152 PRK13896 cobyrinic acid a,c-di 37.2 50 0.0011 36.9 5.0 47 96-145 274-325 (433)
153 cd03135 GATase1_DJ-1 Type 1 gl 36.1 29 0.00064 32.1 2.7 49 95-144 59-109 (163)
154 TIGR01735 FGAM_synt phosphorib 36.0 64 0.0014 41.0 6.2 85 47-144 1054-1160(1310)
155 PF01965 DJ-1_PfpI: DJ-1/PfpI 35.1 13 0.00027 34.6 -0.0 49 95-144 36-87 (147)
156 PRK10867 signal recognition pa 34.7 6.1E+02 0.013 28.4 13.0 169 214-392 8-210 (433)
157 cd03144 GATase1_ScBLP_like Typ 34.1 28 0.00061 31.7 2.1 32 119-152 67-100 (114)
158 cd01556 EPSP_synthase EPSP syn 34.0 98 0.0021 33.3 6.7 103 252-356 11-128 (409)
159 TIGR03481 HpnM hopanoid biosyn 32.1 1.1E+02 0.0023 30.4 6.0 64 215-285 34-97 (198)
160 PRK14974 cell division protein 32.1 5E+02 0.011 28.0 11.5 147 228-382 58-235 (336)
161 TIGR01857 FGAM-synthase phosph 32.1 90 0.002 39.4 6.5 51 94-144 1029-1090(1239)
162 cd03138 GATase1_AraC_2 AraC tr 30.9 60 0.0013 31.2 4.0 48 95-143 68-119 (195)
163 TIGR01356 aroA 3-phosphoshikim 30.6 1.2E+02 0.0026 32.9 6.6 102 253-356 10-124 (409)
164 PRK12723 flagellar biosynthesi 30.1 7.8E+02 0.017 27.1 13.7 157 227-395 105-281 (388)
165 TIGR01739 tegu_FGAM_synt herpe 29.9 71 0.0015 40.3 5.2 70 60-144 948-1034(1202)
166 TIGR01425 SRP54_euk signal rec 29.9 3.2E+02 0.007 30.6 9.8 163 213-385 7-198 (429)
167 cd03141 GATase1_Hsp31_like Typ 29.4 55 0.0012 32.8 3.5 49 95-144 89-139 (221)
168 PRK05282 (alpha)-aspartyl dipe 28.9 80 0.0017 32.3 4.6 74 60-146 55-131 (233)
169 COG0128 AroA 5-enolpyruvylshik 28.0 1.3E+02 0.0028 33.6 6.3 105 249-357 164-287 (428)
170 TIGR00959 ffh signal recogniti 27.7 5.7E+02 0.012 28.6 11.3 161 213-382 6-195 (428)
171 PF02885 Glycos_trans_3N: Glyc 26.6 1.8E+02 0.004 23.3 5.5 46 234-285 3-48 (66)
172 COG3492 Uncharacterized protei 26.4 1.2E+02 0.0026 26.6 4.4 47 215-262 48-98 (104)
173 PRK12727 flagellar biosynthesi 25.7 1.1E+03 0.023 27.5 13.1 132 249-387 303-446 (559)
174 cd04440 DEP_2_P-Rex DEP (Dishe 25.5 1.2E+02 0.0027 26.6 4.5 39 201-241 29-67 (93)
175 KOG2708 Predicted metalloprote 24.0 83 0.0018 32.4 3.5 42 97-143 71-118 (336)
176 cd02072 Glm_B12_BD B12 binding 23.5 6E+02 0.013 23.6 8.9 89 316-442 19-111 (128)
177 cd03139 GATase1_PfpI_2 Type 1 23.0 2.3E+02 0.0051 26.6 6.5 47 96-144 62-110 (183)
178 COG3442 Predicted glutamine am 22.4 1.3E+02 0.0029 30.7 4.6 71 62-145 30-104 (250)
179 KOG3210 Imidazoleglycerol-phos 22.3 1.6E+02 0.0034 28.9 4.9 124 94-219 54-215 (226)
180 COG0128 AroA 5-enolpyruvylshik 22.2 2.8E+02 0.0061 31.0 7.6 101 253-356 24-141 (428)
181 PF06844 DUF1244: Protein of u 22.2 1E+02 0.0022 25.5 3.1 45 215-260 17-65 (68)
182 PRK14806 bifunctional cyclohex 22.1 2.2E+02 0.0048 33.6 7.3 101 255-355 324-440 (735)
183 KOG1097 Adenine deaminase/aden 22.1 1.4E+02 0.003 33.0 5.0 176 223-449 150-328 (399)
184 PRK14722 flhF flagellar biosyn 21.7 1.1E+03 0.023 25.9 15.2 148 234-394 77-240 (374)
185 COG0563 Adk Adenylate kinase a 21.7 1.4E+02 0.0031 28.9 4.7 94 296-395 3-104 (178)
186 PF00610 DEP: Domain found in 21.5 1.1E+02 0.0024 24.8 3.3 41 201-241 9-49 (74)
187 PF08069 Ribosomal_S13_N: Ribo 20.9 1.3E+02 0.0028 24.5 3.3 28 227-261 27-54 (60)
188 cd03129 GAT1_Peptidase_E_like 20.8 1.6E+02 0.0035 28.9 5.0 75 60-144 51-130 (210)
189 TIGR02644 Y_phosphoryl pyrimid 20.5 3E+02 0.0065 30.6 7.3 112 235-367 3-124 (405)
190 cd04443 DEP_GPR155 DEP (Dishev 20.5 1.6E+02 0.0034 25.3 4.1 39 201-241 22-60 (83)
191 COG0334 GdhA Glutamate dehydro 20.1 2E+02 0.0042 32.0 5.7 53 189-241 43-125 (411)
192 PRK02427 3-phosphoshikimate 1- 20.1 2.7E+02 0.0058 30.4 7.0 101 252-356 23-139 (435)
No 1
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2e-107 Score=901.67 Aligned_cols=480 Identities=16% Similarity=0.216 Sum_probs=427.5
Q ss_pred eeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 50 RLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 50 ~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
+|++.||.|| +||+++|.++.|+|||...... ..++. ...|++||||||||+|. |.+...++ +
T Consensus 3 ~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~------~~~l~-~~~~~~IIlSpGPg~p~---d~~~~~~i-~ 71 (531)
T PRK09522 3 DILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTL------IERLA-TMSNPVLMLSPGPGVPS---EAGCMPEL-L 71 (531)
T ss_pred eEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccC------HHHHH-hcCcCEEEEcCCCCChh---hCCCCHHH-H
Confidence 7899999999 8899999999999998321000 00000 11468999999999998 77888888 8
Q ss_pred HHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccccCCCcEEEEeec
Q 007779 124 RSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIADP 190 (590)
Q Consensus 124 ~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a~~ 190 (590)
+.+..++|||| |||||+|+.+|||+|.+. +.+.||+++ + .+.+.+++|||+.|..+|++++++|..
T Consensus 72 ~~~~~~iPILGIClG~QlLa~a~GG~V~~~-~~~~~G~~~~i~~~~~~lf~~~~~~~~v~~~Hs~~v~~lP~~l~vlA~s 150 (531)
T PRK09522 72 TRLRGKLPIIGICLGHQAIVEAYGGYVGQA-GEILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHF 150 (531)
T ss_pred HHHhcCCCEEEEcHHHHHHHHhcCCEEEeC-CceeeeeEEEEeecCCccccCCCCCcEEEEehheecccCCCCcEEEEec
Confidence 87878999999 999999999999999999 899999865 1 126899999999999999999999966
Q ss_pred CCcEEEEEcC----CCCcccCCC---chhh------------------HHHHHHHHhhcCCCCCHHHHHHHHHHhcCCcc
Q 007779 191 EGSIMGGGGS----IGPHYSGND---PREM------------------RLVGALREVLAGGHLGYEEVQGVLRDVLPLQV 245 (590)
Q Consensus 191 ~g~im~~~h~----~gvQfHPEs---~~~m------------------~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~ 245 (590)
|+.+||++|+ ||||||||| +.|+ .++++|+++..|++||+|||+++|+.||
T Consensus 151 d~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~~~~l~~~~~~~~Lt~eea~~~~~~il---- 226 (531)
T PRK09522 151 NGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLYQAQTLSQQESHQLFSAVV---- 226 (531)
T ss_pred CCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcCCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHH----
Confidence 8999999996 999999998 5554 3567778889999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCCccccchHHHHHHHhcCCC
Q 007779 246 DNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGE 325 (590)
Q Consensus 246 ~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv 325 (590)
+|+++|.|+||||++||+||||+|||+||++||++++.+++.++...+|+|||||||++|||+||+ +|+|+|++|+
T Consensus 227 ---~g~~~~~qi~AfL~alr~kget~eEl~g~~~a~~~~~~~~~~~~~~~iD~~gtGgdg~~t~nist~-aa~v~A~~Gv 302 (531)
T PRK09522 227 ---RGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTA-SAFVAAACGL 302 (531)
T ss_pred ---cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCCCCCCcccHHH-HHHHHHhCCC
Confidence 999999999999999999999999999999999998876654333479999999999999999998 9999999999
Q ss_pred cEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCCCCCcchh
Q 007779 326 SCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEK 405 (590)
Q Consensus 326 ~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k 405 (590)
||+|||||++||++|| +|+||+||+++++++++++++|++ .||+|+++|.|||+|++++++|++||+||++|+...
T Consensus 303 ~V~kHG~r~~ss~~Gs--advlealGi~~~~~~~~~~~~l~~--~g~~fl~ap~~hpam~~~~~~R~~Lg~rT~fN~lgp 378 (531)
T PRK09522 303 KVAKHGNRSVSSKSGS--SDLLAAFGINLDMNADKSRQALDE--LGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGP 378 (531)
T ss_pred cEEEeCCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEEEhhHhCHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999 999999999999999999999999 667778899999999999999999999998888765
Q ss_pred hhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeE
Q 007779 406 VQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTF 485 (590)
Q Consensus 406 ~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~ 485 (590)
+ +||+++++||+|||||+|.++++++++++|.++++|||| +|+||+++.+ +|.++
T Consensus 379 L---~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G-~G~DEis~~~---------------------~t~v~ 433 (531)
T PRK09522 379 L---INPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS-GGMDEVSLHA---------------------PTIVA 433 (531)
T ss_pred h---cCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC-CCccccCCCC---------------------ceEEE
Confidence 4 789999999999999999999999999999999999999 8999998653 46666
Q ss_pred e-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHCCCCC-chhHHHHHHHHHHHHHhcCCCCCCHHHH
Q 007779 486 E-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGEKG-PTYDRIVLNAGMVDHLLGCDGAEDVSVA 562 (590)
Q Consensus 486 ~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~G~~~-~~~d~v~lNAa~~L~l~g~g~a~s~~eg 562 (590)
+ .+|++++ ++|+|+|||++..+++++ ++++++|+++++++|+|+.. +..|+|++|||++||+.| .+|++||
T Consensus 434 ~~~~g~i~~---~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v~~naa~~l~~~g---~~~l~~g 507 (531)
T PRK09522 434 ELHDGEIKS---YQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHG---HEDLQAN 507 (531)
T ss_pred EEcCCeEEE---EEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHHcC---CCCHHHH
Confidence 5 4777654 999999999999998876 67999999999999999943 457999999999999986 3899999
Q ss_pred HHHHHHHHHchHHHHHHHHHHH
Q 007779 563 MDRAREAIDSGKALKRLLNYIK 584 (590)
Q Consensus 563 ~~~A~e~i~SG~A~~~L~~~~~ 584 (590)
+++|+++|+||+|+++|++|++
T Consensus 508 ~~~a~~~i~sG~a~~~l~~l~~ 529 (531)
T PRK09522 508 AQTVLEVLRSGSAYDRVTALAA 529 (531)
T ss_pred HHHHHHHHhCCHHHHHHHHHHh
Confidence 9999999999999999999986
No 2
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.6e-105 Score=884.78 Aligned_cols=484 Identities=22% Similarity=0.338 Sum_probs=435.8
Q ss_pred eeEeeccccH------HHHHHhCCc-eEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 50 RLTVKADLDS------ALIDQLGLK-ESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 50 ~~~~~~~~d~------~~~~~lg~~-~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
+|++.||.|| ++|+++|.+ +.|++++..+.++.. ...||+||||||||+|. +.+...++
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~----------~~~~d~vIlsgGP~~p~---~~~~~~~l- 66 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIE----------ALNPSHIVISPGPGRPE---EAGISVEV- 66 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHH----------hcCCCEEEECCCCCChh---hCCccHHH-
Confidence 3899999999 778888985 889988877665421 11468999999999998 66777887
Q ss_pred HHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----CC--------ceeEEeccchhccc--cCCCcEEEE
Q 007779 123 LRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EG--------ERRAMNTFWPLLMR--ALPPDVIFI 187 (590)
Q Consensus 123 i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~~--------~~~~~~ryHsl~v~--~~p~~l~v~ 187 (590)
++.+..++|+|| |||||.|+.+|||+|.+. +.++||.++ .+ ..+.+.+|||+.|+ ++|++++++
T Consensus 67 i~~~~~~~PvLGIClG~QlLa~a~Gg~V~~~-~~~~~G~~~~v~~~~~~lf~~~~~~~~v~~~Hs~~v~~~~lp~~~~vl 145 (534)
T PRK14607 67 IRHFSGKVPILGVCLGHQAIGYAFGGKIVHA-KRILHGKTSPIDHNGKGLFRGIPNPTVATRYHSLVVEEASLPECLEVT 145 (534)
T ss_pred HHHhhcCCCEEEEcHHHHHHHHHcCCeEecC-CccccCCceeEEECCCcchhcCCCCcEEeeccchheecccCCCCeEEE
Confidence 888877899999 999999999999999999 889999875 11 24789999999994 799999999
Q ss_pred e-ecCCcEEEEEcC----CCCcccCCCc-----------------hhhHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCcc
Q 007779 188 A-DPEGSIMGGGGS----IGPHYSGNDP-----------------REMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQV 245 (590)
Q Consensus 188 a-~~~g~im~~~h~----~gvQfHPEs~-----------------~~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~ 245 (590)
| ++||.|||++|+ ||||||||+. .++.++++|+++.+|++||+|||+++|+.||
T Consensus 146 A~s~d~~i~a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~~~~~~~~~i~~l~~g~~Lt~~ea~~~~~~il---- 221 (534)
T PRK14607 146 AKSDDGEIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQREEIDIKSYLKKLVEGEDLSFEEAEDVMEDIT---- 221 (534)
T ss_pred EEcCCCCEEEEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhhccCCHHHHHHHhccCCCCCHHHHHHHHHHHH----
Confidence 9 889999999997 9999999972 1345788999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCCccccchHHHHHHHhcCCC
Q 007779 246 DNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGE 325 (590)
Q Consensus 246 ~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv 325 (590)
+|+++|+|+||||++||+||||+|||+||++||++++.+++.+..+.+|+|||||||++|||+||+ +|+++|++|+
T Consensus 222 ---~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~~~~~D~~gtggdg~~t~nist~-~a~v~A~~G~ 297 (534)
T PRK14607 222 ---DGNATDAQIAGFLTALRMKGETADELAGFASVMREKSRHIPAPSPRTVDTCGTGGDGFGTFNISTT-SAFVVAAAGV 297 (534)
T ss_pred ---cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCceEEccCCCCCCCccccHHH-HHHHHHhCCC
Confidence 999999999999999999999999999999999999987765433479999999999999999998 9999999999
Q ss_pred cEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCCCCCcchh
Q 007779 326 SCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEK 405 (590)
Q Consensus 326 ~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k 405 (590)
||+|||||++||++|| +|+||+||+++++++++++++|++ .||+|+++|.|||+|++++++|++||+||++++..+
T Consensus 298 ~V~kHG~r~~ss~~Gs--advle~lGv~~~~~~~~~~~~l~~--~g~~fl~ap~~~p~l~~~~~~R~~Lg~rTifN~lgp 373 (534)
T PRK14607 298 PVAKHGNRAVSSKSGS--ADVLEALGVKLEMTPEEAASVLRE--TGFSFLFAPLFHPAMKHAAPARRELGIRTAFNLLGP 373 (534)
T ss_pred cEEEECCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeeccccCHHHHHHHHHHHHhCCCcHHHhHHh
Confidence 9999999999999999 999999999999999999999999 677778899999999999999999999999887765
Q ss_pred hhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeE
Q 007779 406 VQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTF 485 (590)
Q Consensus 406 ~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~ 485 (590)
++||+++++||+|||||+|.++|+++++.+|.++++||||.||+||+++.+ +|.++
T Consensus 374 ---L~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G~~G~dE~s~~~---------------------~t~v~ 429 (534)
T PRK14607 374 ---LTNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSGIDGYDEISTCG---------------------PTQIL 429 (534)
T ss_pred ---ccCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCccccCCC---------------------ceEEE
Confidence 478999999999999999999999999999999999999999999998653 35555
Q ss_pred e-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHCCCC-CchhHHHHHHHHHHHHHhcCCCCCCHHHH
Q 007779 486 E-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGEK-GPTYDRIVLNAGMVDHLLGCDGAEDVSVA 562 (590)
Q Consensus 486 ~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~G~~-~~~~d~v~lNAa~~L~l~g~g~a~s~~eg 562 (590)
+ .+|++.+ ++|+|++||++..+++++ ++++++|+++++++|+|+. ++.+|.|++|||++||++| +++|++||
T Consensus 430 ~~~~g~i~~---~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~~vl~G~~~~~~~~~v~lnaA~~L~~~g--~~~s~~eg 504 (534)
T PRK14607 430 ELEDGEIVT---YTFDPEELGLKRVDPEELKGGDPQENYRLAEDVLKGEPRRPQRDAVALNAGAALYLVG--EADSIKEG 504 (534)
T ss_pred EEcCCEEEE---EEEcHHHCCCCCCCHHHcCCCCHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHHHcC--CCCCHHHH
Confidence 4 4776654 999999999999888775 6799999999999999994 7899999999999999986 78999999
Q ss_pred HHHHHHHHHchHHHHHHHHHHHHhccC
Q 007779 563 MDRAREAIDSGKALKRLLNYIKISHKL 589 (590)
Q Consensus 563 ~~~A~e~i~SG~A~~~L~~~~~~~~~~ 589 (590)
+++|+++|+||+|+++|++|+++++++
T Consensus 505 ~~~a~~~i~sG~a~~~l~~~~~~~~~~ 531 (534)
T PRK14607 505 VGKALDLIDDGRAYKKLEEVMDLSKTL 531 (534)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998865
No 3
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-82 Score=661.29 Aligned_cols=335 Identities=27% Similarity=0.355 Sum_probs=310.3
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~ 292 (590)
|.++.+|+++.+|++|+++||+++|+.|| +|+++|+|+||||+|||+||||++||+||++||++++.+++.+.
T Consensus 2 ~~~~~~l~kl~~g~~L~~~eA~~l~~~il-------~g~~~~~qi~A~L~Alr~Kget~eEi~G~~~am~~~~~~~~~p~ 74 (338)
T COG0547 2 MDLRKILKKLGRGRDLDREEARELFKAIL-------SGEASPAQIGAFLTALRIKGETPEEIAGFAEAMREHAPKLPVPA 74 (338)
T ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccCCCCC
Confidence 45889999999999999999999999999 99999999999999999999999999999999999887777655
Q ss_pred CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCce
Q 007779 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (590)
Q Consensus 293 ~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf 372 (590)
...+|+|||||||.+|||+||+ +|+|+|++|+||+|||||++|||+|| +|+||+|||+++++|++++++|++ .||
T Consensus 75 ~~~vDi~GTGGDg~~T~NiSt~-aA~v~A~~Gv~VaKHGnrs~sSksGs--aDvleaLGv~l~~~~e~~~~~l~~--~g~ 149 (338)
T COG0547 75 ADPVDIVGTGGDGANTINISTA-AAIVAAAAGVPVAKHGNRSVSSKSGS--ADVLEALGVNLELSPEQAARALEE--TGI 149 (338)
T ss_pred CCCCCeecCCCCCCCcccchHH-HHHHHHhCCCcEEeECCCCCCCCCcH--HHHHHHcCCCCCCCHHHHHHHHHh--cCe
Confidence 4448999999999999999999 99999999999999999999999999 999999999999999999999999 566
Q ss_pred EeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCc
Q 007779 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 452 (590)
Q Consensus 373 ~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~ 452 (590)
+|+|+|.|||+|++++++|++||+||++|....+ +||+++++||+|||||+|.+++|++++++|.++++||||.||+
T Consensus 150 ~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL---~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G~~Gl 226 (338)
T COG0547 150 GFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPL---LNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHGLEGL 226 (338)
T ss_pred EEEEccccCHHHHHHHHHHHHcCCCchHHhhccc---cCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEECCCCc
Confidence 6677999999999999999999999977776553 6777888999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHC
Q 007779 453 LSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALR 530 (590)
Q Consensus 453 ~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~ 530 (590)
||+++.+ .|.|++ .+|++++ |+++|+|||+++.+++++ ++++++|+++++++|+
T Consensus 227 DE~~~~~---------------------~t~v~~l~~g~i~~---~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~ 282 (338)
T COG0547 227 DEVTPTG---------------------TTLVAELKDGEIRE---YTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLA 282 (338)
T ss_pred ccccCCC---------------------CceEEEEcCCceEE---EEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHC
Confidence 9998653 366665 4677764 999999999999888876 5799999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 531 GEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 531 G~~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
|++++.+|+|++|||++||+.| +++|++||+++|+++|+||+|+++|++++.+++.
T Consensus 283 G~~~~~~d~v~~Naa~~L~~~g--~a~~l~eg~~~A~~~i~sG~a~~~l~~l~~~~~~ 338 (338)
T COG0547 283 GEEGPARDAVALNAAAALYAAG--KAESLKEGIALALEAIDSGAALEKLEELVAFSKS 338 (338)
T ss_pred CCCcchHHHHHHHHHHHHHHcC--ccCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC
Confidence 9889999999999999999986 7999999999999999999999999999999863
No 4
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=2.9e-79 Score=643.94 Aligned_cols=332 Identities=23% Similarity=0.297 Sum_probs=307.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCCCC
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVK 294 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~~~ 294 (590)
++++|+++.+|++||+||++++|+.|| +| ++|.|+||||++||+||||+|||+||++||++++.+++.. ..
T Consensus 4 ~~~~l~~l~~g~~Lt~eEa~~~~~~il-------~~-~~~~qigAfL~alr~kget~eEiag~~~a~~~~~~~~~~~-~~ 74 (343)
T PLN02641 4 FRQLIESLIQGTDLTEEEAEAALDFLL-------DD-ADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKVDGL-VD 74 (343)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-------cC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC-CC
Confidence 688999999999999999999999999 88 9999999999999999999999999999999998766532 34
Q ss_pred CceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEe
Q 007779 295 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 374 (590)
Q Consensus 295 ~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~f 374 (590)
.+|||||||||++|||+||+ +|+|+|++|+||+|||||++||++|| +|+||+|||++++++++++++|++ .||+|
T Consensus 75 ~~D~~gtGGdg~~t~nist~-aa~v~A~~G~~V~kHGnr~~ss~~Gs--aDvLeaLGi~~~~~~~~~~~~l~~--~g~~f 149 (343)
T PLN02641 75 AVDIVGTGGDGANTVNISTG-SSILAAACGAKVAKQGNRSSSSACGS--ADVLEALGVAIDLGPEGVKRCVEE--VGIGF 149 (343)
T ss_pred CCceeCCCCCCCCccccHHH-HHHHHHhCCCeEEEeCCCCCCCccCH--HHHHHHcCCCCCCCHHHHHHHHHh--cCcEE
Confidence 79999999999999999998 99999999999999999999999999 999999999999999999999999 56666
Q ss_pred ecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCccc
Q 007779 375 VSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALS 454 (590)
Q Consensus 375 l~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~~e 454 (590)
+++|.|||+|++++++|++||+||++|+..++ +||+++++||+|||||+|.++|+++++.+|.++++|||| +|+||
T Consensus 150 l~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL---~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G-~G~DE 225 (343)
T PLN02641 150 MMAPKYHPAMKIVAPVRKKLKVKTVFNILGPM---LNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHS-EGLDE 225 (343)
T ss_pred EechhhCHHHHHHHHHHHHhCCCcHHHHHHHh---cCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEec-CCCCc
Confidence 77999999999999999999999999887764 799999999999999999999999999999999999999 79999
Q ss_pred cccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHCCC
Q 007779 455 MTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGE 532 (590)
Q Consensus 455 ls~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~G~ 532 (590)
+++.+ +|++++ .+|.+++ |+|+|+|||+++++++++ ++++++|+++++++|+|+
T Consensus 226 is~~g---------------------~t~v~~~~~g~i~~---~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL~G~ 281 (343)
T PLN02641 226 MSPLG---------------------PGDVLEVTPEKIEE---FSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVLSGE 281 (343)
T ss_pred cccCc---------------------ceEEEEEeCCceEE---EEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCC
Confidence 98654 355654 4676654 999999999999988876 679999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccCC
Q 007779 533 KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKLK 590 (590)
Q Consensus 533 ~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~~~ 590 (590)
+++++|.|++|||++||++| +++|++||+++|+++|+||+|+++|++|++++++++
T Consensus 282 ~~~~~d~v~lNaa~~L~~~g--~~~sl~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~~ 337 (343)
T PLN02641 282 KGAIADALILNAAAALLVSG--LAKTLAEGVALARETQESGKAIKTLDSWIKISQELK 337 (343)
T ss_pred CcchHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhh
Confidence 88899999999999999986 789999999999999999999999999999988763
No 5
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-78 Score=636.02 Aligned_cols=329 Identities=29% Similarity=0.396 Sum_probs=301.0
Q ss_pred HHHHHHHHhhcCC----CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCC
Q 007779 214 RLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPP 289 (590)
Q Consensus 214 ~L~~~L~kl~~G~----~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~ 289 (590)
+++++|+++.+|+ +||+|||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.+++
T Consensus 4 ~~~~~i~~l~~g~~~~~~Lt~eea~~~~~~il-------~g~~~~~q~aAfL~alr~KGET~eEiaG~~~a~~~~~~~~~ 76 (342)
T PRK07394 4 RFRELLKKVGSGEHTSKDLTREEAADALKLML-------LGEATPAQIGAFLIAHRIKRPTPEELAGMLDTYDELGPKLQ 76 (342)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCCC
Confidence 4789999999996 999999999999999 99999999999999999999999999999999999987765
Q ss_pred CCCC-CCceEEccCCCCC-CccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCC-CHHHHHHHHH
Q 007779 290 VADV-KSLTHYGEPYDGN-TRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL-SVLQAKELLE 366 (590)
Q Consensus 290 ~~~~-~~vD~~GtGgDG~-~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~-s~e~a~~~Le 366 (590)
.+.. ..+|+|||||||+ +|||+||+ +|+++|++|+||+|||||++|||+|.|.+|+||+|||+++. +++++.++|+
T Consensus 77 ~~~~~~~~d~~GtggDG~~~t~NiSt~-aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~~~~~~~l~ 155 (342)
T PRK07394 77 SPSNQRPPIVFGMPYDGRSRTAPIYPL-TALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSLEQVQEGFE 155 (342)
T ss_pred CCCCCCceeEEeCCCCCCCCCcccHHH-HHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 4322 3689999999996 89999998 99999999999999999999999995559999999999998 9999999999
Q ss_pred hccCceEeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhc-cCCceEEEEecCCcchHHHHHHHHHcCCceEEE
Q 007779 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA-QGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV 445 (590)
Q Consensus 367 ~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP-~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alV 445 (590)
+ .||+|+++|.|||+|++++++|++||+||++|+..++ +|| +++++||+||||++|.++|+++++.+|.++++|
T Consensus 156 ~--~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL---~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~v 230 (342)
T PRK07394 156 Q--TGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELI---WTPHQGDHHLVSGFVHPPTEARAWEALELRGETNFTT 230 (342)
T ss_pred H--cCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCeEEE
Confidence 9 6777788999999999999999999999999888764 789 578899999999999999999999999999999
Q ss_pred EecCCCccccccccccccccCCCCccccccccccCcceeEec-CCcEEeeeeEEEecCCCCCCCCCCCccCCCHHHHHHH
Q 007779 446 VKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEG-DGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIEL 524 (590)
Q Consensus 446 V~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~~-~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~~ 524 (590)
|||.||+||+++.. +|.+++. +|++.+ ++|+|+|||+++.+++ ++++++|+++
T Consensus 231 v~G~~G~dE~s~~~---------------------~t~v~~~~~g~i~~---~~i~p~d~G~~~~~l~--~~~~~~na~~ 284 (342)
T PRK07394 231 VKGLEGSCDLPISR---------------------TAIIGRVQNGHFER---LILHPRDYGCGGKDVP--WESTEEWLEQ 284 (342)
T ss_pred EEcCCCceeccCCC---------------------CeEEEEEcCCeEEE---EEECHHHcCCCcccCC--CCCHHHHHHH
Confidence 99999999997542 3556554 676654 8999999999987552 5799999999
Q ss_pred HHHHHCCCCCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHH
Q 007779 525 GLAALRGEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYI 583 (590)
Q Consensus 525 ~~~vL~G~~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~ 583 (590)
++++|+|++++.+|.|++|||++||++| +++|++||+++|+++|+||+|+++|++|+
T Consensus 285 ~~~vl~G~~~~~~~~v~lNaa~~L~~~g--~~~s~~eg~~~A~~~i~sG~a~~~l~~~~ 341 (342)
T PRK07394 285 AQAALNGEPGPLTQALIWNGGFYLWRAG--ISSSLEEGIEKAEELLNSGKALQKLQQLI 341 (342)
T ss_pred HHHHHCCCCcchhHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 9999999988899999999999999986 78999999999999999999999999997
No 6
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.2e-74 Score=608.94 Aligned_cols=335 Identities=25% Similarity=0.366 Sum_probs=309.8
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~ 292 (590)
|.++++|+++..|++||+|||+++|+.|+ +|+++|+|+||||++||+||||+|||+||++||+++..++++++
T Consensus 1 ~~~~~~i~~l~~g~~Lt~~Ea~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~ 73 (339)
T PRK00188 1 MTMKELLEKLVEGEDLSEEEAEELMDAIM-------SGEATPAQIAAFLTALRVKGETVDEIAGAARAMREHAVPVPDPD 73 (339)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCC
Confidence 56789999999999999999999999999 99999999999999999999999999999999999998776543
Q ss_pred CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCce
Q 007779 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (590)
Q Consensus 293 ~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf 372 (590)
+.+|+|||||||+++||+||+ +|+++|++|+||+|||||++||++|| +|+||+||++++.++++++++|++ .||
T Consensus 74 -~~iDi~gtggdg~~t~nis~~-~a~vlA~~G~~V~kHG~~~~~s~~Gs--advLe~lGi~~~~~~~~~~~~l~~--~g~ 147 (339)
T PRK00188 74 -DAVDIVGTGGDGANTFNISTA-AAFVAAAAGVKVAKHGNRSVSSKSGS--ADVLEALGVNLDLSPEQVARCLEE--VGI 147 (339)
T ss_pred -CCCcccCCCCCCCCccchHHH-HHHHHHhCCCEEEEECCCCCCCCcCH--HHHHHHcCCCCCCCHHHHHHHHHH--cCc
Confidence 479999999999999999998 99999999999999999999999999 999999999999999999999999 677
Q ss_pred EeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCc
Q 007779 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 452 (590)
Q Consensus 373 ~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~ 452 (590)
+|+++|.|||+|++++++|++||+||++|+.+++ +||++++++|+|||||+|.++|+++++.+|.++++||||.||+
T Consensus 148 ~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L---~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~~G~ 224 (339)
T PRK00188 148 GFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPL---TNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGSDGL 224 (339)
T ss_pred EEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 7788999999999999999999999999999875 8999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHC
Q 007779 453 LSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALR 530 (590)
Q Consensus 453 ~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~ 530 (590)
+|+++.. +|.++. .+|++. +++|+|++||++..+.+++ ++++++|+++++++|+
T Consensus 225 dE~~~~~---------------------~t~v~~~~~g~~~---~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl~ 280 (339)
T PRK00188 225 DEISLTG---------------------PTTVAELKDGEIR---EYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVLQ 280 (339)
T ss_pred eeecCCC---------------------CEEEEEEcCCEEE---EEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHC
Confidence 9998653 355554 367654 3899999999998876554 5799999999999999
Q ss_pred CC-CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccC
Q 007779 531 GE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKL 589 (590)
Q Consensus 531 G~-~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~~ 589 (590)
|+ .+++++.+++|||++||++| .++|++||+++|+++|+||+|+++|++|++.+++.
T Consensus 281 G~~~~~~~~~v~lnaA~~L~~~g--~~~s~~e~~~~A~~~i~sG~a~~~l~~~~~~~~~~ 338 (339)
T PRK00188 281 GKGPGAARDAVLLNAAAALYVAG--KADDLKEGVELAREAIDSGAALAKLEELVAFSQEL 338 (339)
T ss_pred CCCCCchHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhccC
Confidence 96 67899999999999999986 68999999999999999999999999999998753
No 7
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=1.1e-73 Score=601.52 Aligned_cols=326 Identities=23% Similarity=0.322 Sum_probs=300.8
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCC-CCCCce
Q 007779 219 LREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA-DVKSLT 297 (590)
Q Consensus 219 L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~-~~~~vD 297 (590)
|+++.+|++||++||+++|+.|| +|+++|.|+||||++||+||||+||++||++||+++..+++++ ....+|
T Consensus 1 l~~~~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~Elag~~~a~~~~~~~~~~~~~~~~iD 73 (330)
T TIGR01245 1 LEKLIDGKDLSRDEAEQLMKEIM-------SGEASPAQIAAILAALRIKGETPEEITGFAKAMREHAVKVPGRPVEDLVD 73 (330)
T ss_pred CchhhcCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCccCCCccc
Confidence 46788999999999999999999 9999999999999999999999999999999999999877653 345799
Q ss_pred EEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeecc
Q 007779 298 HYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSL 377 (590)
Q Consensus 298 ~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a 377 (590)
+|||||||++|||+||+ +|+++|++|+||+|||||++||++|+ +|+||+|||+++.++++++++|++ .||+|+++
T Consensus 74 ~~gtggdg~~t~nist~-~a~vlA~~G~~V~kHG~r~~~s~~Gs--~d~le~LGi~~~~s~~~~~~~l~~--~g~~f~~~ 148 (330)
T TIGR01245 74 IVGTGGDGANTINISTA-SAFVAAAAGVKVAKHGNRSVSSKSGS--ADVLEALGVNLDLGPEKVARSLEE--TGIGFLFA 148 (330)
T ss_pred ccCCCCCCCCccccHHH-HHHHHHhCCCEEEEeCCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeec
Confidence 99999999999999998 99999999999999999999999999 999999999999999999999999 67777889
Q ss_pred hhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCcccccc
Q 007779 378 REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTT 457 (590)
Q Consensus 378 ~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~~els~ 457 (590)
|.|||+|++++++|++||+||++|+.+++ +||++++++|+|||||+|.++|+++++.+|.++++||||.||++|+++
T Consensus 149 ~~~~P~~~~l~~lR~~lg~rT~~N~lgpL---~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~G~~G~dE~s~ 225 (330)
T TIGR01245 149 PLYHPAMKHVAPVRRELGVRTVFNLLGPL---TNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVHGDDGLDEISL 225 (330)
T ss_pred hhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEECCCCceeecC
Confidence 99999999999999999999999997764 799999999999999999999999999999999999999999999986
Q ss_pred ccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHCCCC-C
Q 007779 458 RLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGEK-G 534 (590)
Q Consensus 458 ~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~G~~-~ 534 (590)
.+ +|.+++ .+|++.+ ++|+|+|||++..+++++ ++++++|+++++++|+|+. +
T Consensus 226 ~~---------------------~t~v~~~~~g~~~~---~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~l~G~~~~ 281 (330)
T TIGR01245 226 TG---------------------PTTVAELKDGEIRE---YTLDPEDFGLPRAPLEELAGGSPEENAEILRDILRGKGSG 281 (330)
T ss_pred CC---------------------cEEEEEEECCEEEE---EeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHHHCCCCCC
Confidence 53 355554 4776654 899999999998877664 6789999999999999994 7
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHH
Q 007779 535 PTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKI 585 (590)
Q Consensus 535 ~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~ 585 (590)
+++|.|++|||++||++| +++|++||+++|+++|+||+|+++|++|+++
T Consensus 282 ~~~~~v~lnaA~~L~~~g--~~~s~~e~~~~a~~~i~sG~a~~~l~~~~~~ 330 (330)
T TIGR01245 282 AKRDIVALNAAAALYVAG--RASDLKEGVELALEAIDSGAAAEKLEELVAF 330 (330)
T ss_pred cHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHhC
Confidence 899999999999999986 7899999999999999999999999999874
No 8
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=5.8e-71 Score=575.00 Aligned_cols=306 Identities=19% Similarity=0.225 Sum_probs=278.5
Q ss_pred hHHHHHHHHhhcC----CCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCC
Q 007779 213 MRLVGALREVLAG----GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 288 (590)
Q Consensus 213 m~L~~~L~kl~~G----~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~ 288 (590)
|.|.++|+++.+| ++||+|||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.++
T Consensus 1 ~~~~~~i~~l~~G~~~~~~Lt~eEA~~~~~~il-------~g~~~~~qi~AfL~alr~KgET~eElaG~~~a~~~~~~~~ 73 (317)
T PRK08136 1 MDYAKIIKEIGRGKNGARDLDRDTARALYGAML-------DGRVPDLELGAILIALRIKGESEAEMLGFLDAMQAHTIPL 73 (317)
T ss_pred CCHHHHHHHHHCCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcC
Confidence 5688999999999 8999999999999999 9999999999999999999999999999999999999877
Q ss_pred CCCC-C-CCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHH
Q 007779 289 PVAD-V-KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLE 366 (590)
Q Consensus 289 ~~~~-~-~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le 366 (590)
+.+. . ..+||||||||++ |+|+||+ +|+|+|++|+||+|||||++|||+|| +|+||+|||+++++|++++++|+
T Consensus 74 ~~~~~~~~~iD~~gtgGd~~-t~nist~-aA~vlA~~G~~V~kHGnr~vssk~gs--advleaLGi~~~~~~~~~~~~l~ 149 (317)
T PRK08136 74 TPPAGRPMPVVIPSYNGARK-QANLTPL-LALLLAREGVPVLVHGVSEDPTRVTS--AEIFEALGIPPTLHADQAQAKLA 149 (317)
T ss_pred CCCCCCCceEEeCCCCCCCC-CcChHHH-HHHHHHHCCCeEEEECCCCCCCcccH--HHHHHHcCCCCCCCHHHHHHHHH
Confidence 5432 2 3699999999975 9999998 99999999999999999999999999 99999999999999999999999
Q ss_pred hccCceEeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhc--cCCceEEEEecCCcchHHHHHHHHHcCCceEE
Q 007779 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--QGREAIVAGFYHEGYEEPLLMLMKRRGVHSGL 444 (590)
Q Consensus 367 ~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP--~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~al 444 (590)
+ .||+|+++|.|||+|++++++|++||+||++|+.+++ +|| +++++||+|||||+|.++|+++++++|. +++
T Consensus 150 ~--~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL---~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 150 E--GQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKL---ATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred h--cCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9 6777788999999999999999999999999998875 799 6899999999999999999999999998 999
Q ss_pred EEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCc-cCCCHHHHH
Q 007779 445 VVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPR-ADRSVSKNI 522 (590)
Q Consensus 445 VV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~-~~~~~~~na 522 (590)
||||.||+||+++.. +|.+++ .+|+++ ++++|++||++..+ +- .++++++|+
T Consensus 224 vv~G~~G~dE~s~~~---------------------~t~v~~~~~g~~~----~~~~p~~~g~~~~~-~~~~~~~~~~na 277 (317)
T PRK08136 224 LMRGTEGEVYANPRR---------------------CPQIDWIHDGGCR----VLVERQSGSADEPP-ELPAAKDAATTA 277 (317)
T ss_pred EEEcCCCceeecCCC---------------------CceEEEEeCCEEE----EEECHHHcCCccCc-hhccCCCHHHHH
Confidence 999999999998653 355654 366542 78999999999876 33 267999999
Q ss_pred HHHHHHHCCCCCchhHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 007779 523 ELGLAALRGEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMD 564 (590)
Q Consensus 523 ~~~~~vL~G~~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~ 564 (590)
+++++||+|+ ++.+|.|++|||++||++| +++|+++|++
T Consensus 278 ~~~~~vL~G~-~~~~d~v~lNaa~~l~~~g--~~~~~~~g~~ 316 (317)
T PRK08136 278 AWIERVLAGE-VPVPESIARQVACCLVAAG--EAATIEDGLA 316 (317)
T ss_pred HHHHHHHCCC-CCcchHHHHHHHHHHHHcC--ccCCHHHhhc
Confidence 9999999995 5778999999999999986 7899999986
No 9
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=3.1e-68 Score=556.68 Aligned_cols=308 Identities=23% Similarity=0.308 Sum_probs=277.2
Q ss_pred hHHHHHHHHhhcCC----CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCC
Q 007779 213 MRLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 288 (590)
Q Consensus 213 m~L~~~L~kl~~G~----~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~ 288 (590)
|+++.+|+++++|+ +||+|||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.++
T Consensus 2 ~~~~~~ik~vg~gk~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~r~~~~~~ 74 (323)
T PRK09071 2 HPFAEYIRILGKGKRGRRSLTREEARQAMGMIL-------DGEVEDDQLGAFLMLLRVKEETAEELAGFVEAIRERLQAP 74 (323)
T ss_pred CcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 46899999999998 999999999999999 9999999999999999999999999999999999999776
Q ss_pred CCCCCCCceE-EccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCC-CCHHHHHHhcCCCCCCCHHHHHHHHH
Q 007779 289 PVADVKSLTH-YGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGG-VTEEQMLKFMGASTNLSVLQAKELLE 366 (590)
Q Consensus 289 ~~~~~~~vD~-~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~G-st~aDvLeaLGi~i~~s~e~a~~~Le 366 (590)
+.+ ..+|| ||||+|+..++| |+ +|+++|++|+||+|||||++||++| | +|+||+|||+++.++++++++|+
T Consensus 75 ~~~--~~iD~~~gtG~d~~~~~~--~~-~a~vlA~~G~~V~kHGnr~~ssk~g~s--aDvLeaLGv~~~~~~~~~~~~l~ 147 (323)
T PRK09071 75 PLA--VDLDWPSYAGKRRHLPWY--LL-AAKLLAQNGYRVLLHGGGGHTAGRLYT--EQLLEALGIPIARSWQEAEQALE 147 (323)
T ss_pred CCC--CceecCCcCCCCCCcccH--HH-HHHHHHHCCCeEEEECCCCCCCCcccH--HHHHHHCCCCCCCCHHHHHHHHH
Confidence 532 35899 999999888776 44 9999999999999999999999997 7 99999999999999999999999
Q ss_pred hccCceEeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEE
Q 007779 367 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVV 446 (590)
Q Consensus 367 ~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV 446 (590)
+ .||+|+++|.|||+|++++++|++||+||++|+..++ +||+++++||+||||++|.++|+++++.+|.++++||
T Consensus 148 ~--~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL---~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv 222 (323)
T PRK09071 148 E--HNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARL---LNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVF 222 (323)
T ss_pred h--cCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHH---cCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEE
Confidence 9 6777788999999999999999999999999988764 7999999999999999999999999999999999999
Q ss_pred ecCCCccccccccccccccCCCCccccccccccCcceeEec-CCcEEeeeeEEEecCCCCCCCCCCCccCCCHHHHHHHH
Q 007779 447 KGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEG-DGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIELG 525 (590)
Q Consensus 447 ~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~~-~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~~~ 525 (590)
||.||+||+++.+ +|.+++. +|++.+ ++++ +||++..++ ++++|++++
T Consensus 223 ~G~~G~dE~s~~~---------------------~t~v~~~~~g~i~~---~~~~--~~g~~~~~~-----~~~~na~~~ 271 (323)
T PRK09071 223 KGEGGESERNPDV---------------------STTLYGSRNGEAWD---EEWP--ALSEERHVK-----PEELDPEQL 271 (323)
T ss_pred ECCCCceeecCCC---------------------ceEEEEEcCCeEEE---EEec--ccccccCCC-----CcccCHHHH
Confidence 9999999998653 3566654 666653 6774 588876643 789999999
Q ss_pred HHHHCCCCC-c-hhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHch
Q 007779 526 LAALRGEKG-P-TYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSG 573 (590)
Q Consensus 526 ~~vL~G~~~-~-~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG 573 (590)
++||+|+.+ + ..|+|++|||++|| .| +++|++||+++|+++|+.+
T Consensus 272 ~~vl~G~~~~~~~~d~v~~Naa~aL~-~g--~~~sl~eg~~~A~~~w~~r 318 (323)
T PRK09071 272 LAVWRGEEEDEYGENAVIATMALALW-RG--LNQSREEAFEKAAQLWATR 318 (323)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHHHh
Confidence 999999843 3 56999999999999 65 7899999999999999865
No 10
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=2.5e-57 Score=461.12 Aligned_cols=248 Identities=27% Similarity=0.389 Sum_probs=221.9
Q ss_pred CCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceE
Q 007779 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFA 373 (590)
Q Consensus 294 ~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~ 373 (590)
++||+|||||||.+|||+||+ +|+++|++|+||+|||||++|+++|| +|+||+||+++++++++++++|++ .||+
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~-~a~vlAa~G~~V~kHG~r~~~~~~Gs--~dvLe~LGv~~~~~~~~~~~~l~~--~g~~ 76 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTA-AAIVLAAAGVPVAKHGNRGVTSKSGS--ADVLEALGVPIDLSPEEAQAQLEE--TGIA 76 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHH-HHHHHHHTTSEEEEEEESGCTTSSSH--HHHHHHSTB-TT--HHHHHHHHHH--HSEE
T ss_pred CceEEecCCCCCCCceehHHH-HHHHHHccCCcEecccCCCccccccH--HHHHHhcCCCcCCCHHHHHHHhhc--cCeE
Confidence 478999999999999999998 99999999999999999999999999 999999999999999999999999 6777
Q ss_pred eecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCcc
Q 007779 374 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGAL 453 (590)
Q Consensus 374 fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~~ 453 (590)
|+++|.|||+|++++++|++||+||++++.+++ +||+++++||+|||||+|.++|+++++.+|+++++|||| ||++
T Consensus 77 fl~~~~~~p~~~~l~~~R~~lg~rT~~N~l~pL---~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G-~G~d 152 (252)
T PF00591_consen 77 FLFAPNFHPALKRLAPVRRELGIRTVFNTLGPL---LNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKG-EGSD 152 (252)
T ss_dssp EEEHHHHSGGHHHHHHHHHHHTS--SHHHHGHH---HHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEE-TTBS
T ss_pred EecchhcCcchHHHHHHHHHcCCCCHHHhhhhh---cCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEec-CCcc
Confidence 788999999999999999999999999998765 799999999999999999999999999999999999999 9999
Q ss_pred ccccccccccccCCCCccccccccccCcceeEec-CCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHCC
Q 007779 454 SMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEG-DGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRG 531 (590)
Q Consensus 454 els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~~-~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~G 531 (590)
|+++.. +|.+++. +|++. .++++|++||++..+.+++ .+++++|+++++++|+|
T Consensus 153 E~~~~~---------------------~t~v~~~~~g~~~---~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G 208 (252)
T PF00591_consen 153 EISPLG---------------------PTRVYELKNGEIT---EYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAG 208 (252)
T ss_dssp SHHHSS---------------------HEEEEEHHTTEEE---EEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTT
T ss_pred hhhhcc---------------------CcEEEeecCCcee---EEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcC
Confidence 998643 3556543 67665 4999999999998887776 46899999999999999
Q ss_pred CCCch-hHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHH
Q 007779 532 EKGPT-YDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKAL 576 (590)
Q Consensus 532 ~~~~~-~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~ 576 (590)
+..+. +|.|++|||++||++| +++|++||+++|+++|+||+||
T Consensus 209 ~~~~~~~d~v~~nAa~~L~~~g--~~~s~~eg~~~a~e~i~sG~Al 252 (252)
T PF00591_consen 209 EEDPAHRDAVLLNAAAALYVAG--KASSLEEGVEKAREAIDSGKAL 252 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCCC
Confidence 97665 9999999999999986 7899999999999999999997
No 11
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=1e-54 Score=466.30 Aligned_cols=302 Identities=19% Similarity=0.226 Sum_probs=261.1
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~ 292 (590)
|++.++|+++.+|++||++|++++|+.|+ +|+++|.|++|||||+++||||.+|+++|++||++++.++++++
T Consensus 1 m~~~~iI~k~~~g~~Lt~eE~~~~~~~i~-------~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~aM~~sg~~~~~~~ 73 (434)
T PRK06078 1 MRMVDLIQKKRDGKELTTEEINFFIEGYT-------NGTIPDYQMSALAMAIYFKDMTDRERADLTMAMVNSGDTIDLSA 73 (434)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcc
Confidence 56789999999999999999999999999 99999999999999999999999999999999999999888753
Q ss_pred C--CCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhc-CCCCCCCHHHHHHHHHhcc
Q 007779 293 V--KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (590)
Q Consensus 293 ~--~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaL-Gi~i~~s~e~a~~~Le~~g 369 (590)
. +.+|+|||||||.+|||+ +|+++|+||++|+|||||+++|++|| +|+||+| |+++++++++++++|++
T Consensus 74 ~~~~~vD~~gTGGdG~kt~ni----~a~ivAA~Gv~VaKhgnR~lss~~GT--aD~LE~lpG~~~~ls~e~~~~~l~~-- 145 (434)
T PRK06078 74 IEGIKVDKHSTGGVGDTTTLV----LAPLVAAFGVPVAKMSGRGLGHTGGT--IDKLESIKGFHVEISQEDFIKLVNE-- 145 (434)
T ss_pred cCCCeeEecCCCCCCCCchHH----HHHHHHcCCCCeeeeCCCCcCCCcch--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 2 379999999999999994 78899999999999999999999999 9999999 99999999999999999
Q ss_pred CceEeec-chhhChHhHHHHhhhcccCCCC--CCCcchhhhhhhhccCCceEEEEec--------CCcchHHHHHHHHHc
Q 007779 370 IGFAYVS-LREARPSLYSLIGLREHIKKRP--PVATSEKVQQFVRAQGREAIVAGFY--------HEGYEEPLLMLMKRR 438 (590)
Q Consensus 370 ~gf~fl~-a~~~~Pal~~l~~vR~~Lg~Rt--PL~np~k~~~~lnP~~~~~~v~GV~--------h~~~~~~~a~~l~~l 438 (590)
.||+|++ +|.|||+|++++++|++++.-. ||.||.-+.+=+ .++++++|+||+ +++..+.+|++|..+
T Consensus 146 ~G~~fl~~a~~~~PAdk~v~~lR~v~~t~n~lPLi~~SImSKKl-Aag~~~~vldV~~G~gAfm~~~~~a~~lA~~l~~l 224 (434)
T PRK06078 146 NKVAVIGQSGNLTPADKKLYALRDVTATVNSIPLIASSIMSKKI-AAGADAIVLDVKTGAGAFMKTVEDAEELAHAMVRI 224 (434)
T ss_pred hCcEEEccCCCcChhhhhhHHHhccccccChHHhhhhHhhhhhh-hcCCCeEEEeeecCCCCCCCCHHHHHHHHHHHHHH
Confidence 5677787 5999999999999999999533 444441000000 177899999999 999999999999999
Q ss_pred CCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCccCCC
Q 007779 439 GVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRADRS 517 (590)
Q Consensus 439 G~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~ 517 (590)
|.+ .| . +.+++ .++ |++||+. .++
T Consensus 225 G~~-----~g---------~-----------------------~~~a~lt~~-----------~~plG~~-------iGn 249 (434)
T PRK06078 225 GNN-----VG---------R-----------------------NTMAVISDM-----------SQPLGRA-------IGN 249 (434)
T ss_pred HHh-----cC---------C-----------------------eEEEEECCC-----------Ccccccc-------CCC
Confidence 964 12 0 11111 122 6677762 468
Q ss_pred HHHHHHHHHHHHCCC-CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 518 VSKNIELGLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 518 ~~~na~~~~~vL~G~-~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
+.|+++. +++|+|+ +++.+|.+++||+.+|++.| .+.++++|+++|+++|+||+|+++|++|+++|+.
T Consensus 250 a~Ev~Ea-~~vL~G~~~~~~~d~v~~~A~~~L~~~g--~~~~~~eg~~~a~e~l~sGkAl~kf~~~v~aqGg 318 (434)
T PRK06078 250 ALEVLEA-IDTLQGKGPKDLTELVLTLGSQMVVLAG--KAKTLEEAREHLIEVMNNGKALEKFKEFLSAQGG 318 (434)
T ss_pred HHHHHHH-HHHHCCCCcccHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhccHHHHHHHHHHHHhCC
Confidence 8898887 8999998 45799999999999999986 7889999999999999999999999999999975
No 12
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-54 Score=428.15 Aligned_cols=295 Identities=20% Similarity=0.239 Sum_probs=255.8
Q ss_pred HHHHHHHHHHhcC-C-CHHHHHHHHHhhhhcC----CCCCC-----C-C-CCCceEEccCCCCCCccccchHHHHHHHhc
Q 007779 256 LLSAFLIGQRMNR-E-TDRELKAYCLAFDDEL----GPPPV-----A-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSC 322 (590)
Q Consensus 256 qigAFL~alr~Kg-E-T~eElag~~~A~~~~~----~~~~~-----~-~-~~~vD~~GtGgDG~~t~niST~laA~vlAa 322 (590)
+...||++|+... | .+|-|....+|+..+. .+++. + + .+.+|++||||||.||||+||. +|+|+|+
T Consensus 52 ~~~sfl~~L~~Tkae~~~e~l~ea~~al~s~s~~~~~pla~~~m~hpr~~~~~vDIVGTGGDG~NTfNvST~-saIvAag 130 (373)
T KOG1438|consen 52 ETLSFLVDLSETKAESSLEFLLEANEALISASLVLLVPLARAMMKHPRKVEDAVDIVGTGGDGANTFNVSTG-SAIVAAG 130 (373)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhccccchhhhhCcccCCceeEEeccCCCCcceeeecch-HHHHHhc
Confidence 3489999998643 3 5666677777777665 22221 1 1 2479999999999999999999 9999999
Q ss_pred CCCcEEeecCCCCCCCCCCCHHHHHHhcCCC-CCCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCC---
Q 007779 323 YGESCLLHGAEWMPPKGGVTEEQMLKFMGAS-TNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRP--- 398 (590)
Q Consensus 323 ~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~-i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~Rt--- 398 (590)
||.+|+||||++.||.+|+ +|+|++||+. ++.+|+.+.+++++ .+|.|+.+|.|||+|+++.++||+||++|
T Consensus 131 ~GlkvcKhGnkaStSasGs--aDll~~lGCd~l~v~p~~i~~~~e~--~~f~Fl~aPm~Hp~mk~V~piRK~LgipTvFN 206 (373)
T KOG1438|consen 131 CGLKVCKHGNKASTSASGS--ADLLEALGCDVLDVGPEGIKRCVEE--GGFGFLMAPMYHPAMKIVGPIRKKLGIPTVFN 206 (373)
T ss_pred ccchhhhcCCccccccCcc--HHHHHhcCceeeccCCccccccccc--CceeEEechhhcccccchhHHHHhcCCccHHH
Confidence 9999999999999999999 9999999987 78999999999999 56666889999999999999999999999
Q ss_pred ---CCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCccccccccccccccCCCCcccccc
Q 007779 399 ---PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSG 475 (590)
Q Consensus 399 ---PL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~ 475 (590)
||.||+++ .+.|+||||+++.+.||++++++|..+-++|.|..|.||+++.+
T Consensus 207 ilGPlLnP~~v---------~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP~G---------------- 261 (373)
T KOG1438|consen 207 ILGPLLNPARV---------SYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSPLG---------------- 261 (373)
T ss_pred hcccccCcchh---------hhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCCCC----------------
Confidence 77777654 58999999999999999999999999899999999999998654
Q ss_pred ccccCcceeEec-CCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHCCC---CCchhHHHHHHHHHHHHH
Q 007779 476 FRSLNVESTFEG-DGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGE---KGPTYDRIVLNAGMVDHL 550 (590)
Q Consensus 476 ~~~~~~t~v~~~-~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~G~---~~~~~d~v~lNAa~~L~l 550 (590)
+|++|.. ++++ ..+.|.++|.+||++++++.++ .++|.+||-..+++|+|+ ..|.+|.+++|+|++|++
T Consensus 262 -----~t~vw~v~~se~-k~e~f~~~P~~Fgl~~h~Ls~~asggP~~NAilleevLSg~~hagdPI~Dy~lmNtAall~v 335 (373)
T KOG1438|consen 262 -----GTLVWDVTPSEE-KIEEFSFDPLDFGLPRHTLSDLASGGPDYNAILLEEVLSGESHAGDPIADYLLMNTAALLLV 335 (373)
T ss_pred -----CceEEEecCCce-eeeeeecCHhhcCCCcCchhhhccCCCCccHHHHHHHhcCcccCCChHHHHHHHHHHHHHHH
Confidence 5788865 3333 2346999999999999999886 689999999999999998 357999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 551 LGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 551 ~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
++ .+++++||+..|+|.|.||+|++.|+.|+..++.
T Consensus 336 s~--~~q~l~EGv~~A~esisSG~Alr~L~~fi~~~s~ 371 (373)
T KOG1438|consen 336 SN--RVQTLAEGVTVARESISSGKALRTLDSFINISSL 371 (373)
T ss_pred hh--hhhHHHhhhHHHHHhhcchHHHHHHHHHHhhhhc
Confidence 86 7899999999999999999999999999977653
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=1.6e-50 Score=431.06 Aligned_cols=298 Identities=19% Similarity=0.184 Sum_probs=254.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC--C
Q 007779 216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD--V 293 (590)
Q Consensus 216 ~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~--~ 293 (590)
.++|+++..|++||+||++++|+.|+ +|+++|.|++|||||+|+||||+||+++|++||+++..+++++. .
T Consensus 2 ~~~i~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~~l~~~~~~~ 74 (405)
T TIGR02644 2 VDIIRKKRDGKKLSDEEINFFINGYT-------NGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGEVLDLSSLPG 74 (405)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcccCC
Confidence 46899999999999999999999999 99999999999999999999999999999999999998888764 3
Q ss_pred CCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcC-CCCCCCHHHHHHHHHhccCce
Q 007779 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMG-ASTNLSVLQAKELLEDEEIGF 372 (590)
Q Consensus 294 ~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLG-i~i~~s~e~a~~~Le~~g~gf 372 (590)
+.+|+|||||||. |+||+ +|+++|++|+||+|||||+++|++|| +|+||+|| ++++++++++++++++ .||
T Consensus 75 ~~vD~~gTGGdG~---~iSt~-~a~ivAa~Gv~VaKhgnR~lss~~GT--aD~LE~lgG~~v~ls~e~~~~~l~~--~G~ 146 (405)
T TIGR02644 75 PKVDKHSTGGVGD---KVSLV-LGPIVAACGVKVAKMSGRGLGHTGGT--IDKLESIPGFRTELSEAEFIEIVNK--VGL 146 (405)
T ss_pred CeeEEeCCCCCCC---CchHH-HHHHHHhCCCCEEeeCCCCCCCcchH--HHHHHhcCCCCCCCCHHHHHHHHHH--cCe
Confidence 4899999999998 48998 99999999999999999999999999 99999998 9999999999999999 677
Q ss_pred Eeecch-hhChHhHHHHhhhcccCCCC--CCCcchhhhhhhhccCCceEEEEe--------cCCcchHHHHHHHHHcCCc
Q 007779 373 AYVSLR-EARPSLYSLIGLREHIKKRP--PVATSEKVQQFVRAQGREAIVAGF--------YHEGYEEPLLMLMKRRGVH 441 (590)
Q Consensus 373 ~fl~a~-~~~Pal~~l~~vR~~Lg~Rt--PL~np~k~~~~lnP~~~~~~v~GV--------~h~~~~~~~a~~l~~lG~~ 441 (590)
+|++++ ++||++++++++|++++.-. ||.++..+.+=+ +.+++++|++| ++.+....+|+.|..+|.+
T Consensus 147 ~fl~~~~~l~PAdk~l~~lRd~~~Tv~sipLi~aSimSKK~-A~G~~~~vlDVk~G~gAfm~~~e~a~~LA~~~~~~g~~ 225 (405)
T TIGR02644 147 AIIGQTKDLAPADKKLYALRDVTGTVDSIPLIASSIMSKKL-AAGADAIVLDVKVGSGAFMKTLEDAKELAKLMVEIGKG 225 (405)
T ss_pred EEecCccccCcchhHHHHHhhcccccCcHHHHHHHHHHHHH-hcCCCeEEEeecccCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 888899 99999999999999999333 888887543222 24679999999 9999999999999988854
Q ss_pred eEE--EEecCCCccccccccccccccCCCCccccccccccCcceeEecCCcEEeeeeEEEecCCCCCCCCCCCccCCCHH
Q 007779 442 SGL--VVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTPRADRSVS 519 (590)
Q Consensus 442 ~al--VV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~ 519 (590)
.++ ++... +++++ +|.. .+++.
T Consensus 226 ~g~~~~a~~t-~md~p------------------------------------------------lG~~-------iGnal 249 (405)
T TIGR02644 226 AGRKTSALLT-DMNQP------------------------------------------------LGRA-------IGNAL 249 (405)
T ss_pred cCCeEEEEec-CCCcc------------------------------------------------ccCC-------CCChh
Confidence 333 22221 12221 2211 12333
Q ss_pred HHHHHHHHHHCCC-CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 520 KNIELGLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 520 ~na~~~~~vL~G~-~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
| ++...++|+|+ +.+.+|.++.||+.+|++.| ++.++++|+++|+++|+||+|++||++|+++|+.
T Consensus 250 E-v~Eai~~L~g~~p~dl~e~~~~la~~~L~~~g--~a~~~~~g~~~a~~~l~sG~Al~kf~~~v~aQGG 316 (405)
T TIGR02644 250 E-VKEAVEFLKGEGPADLKELTLALAAEMLLLAG--IAKTEKEARALAEDVLESGKALEKFRRFVEAQGG 316 (405)
T ss_pred h-HHHHHHHHCCCCcHHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCC
Confidence 3 33347999998 56799999999999999976 7889999999999999999999999999999974
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=3.5e-49 Score=427.29 Aligned_cols=311 Identities=20% Similarity=0.215 Sum_probs=261.5
Q ss_pred cCCcEEEEEcCCCCcccCCCchhhHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q 007779 190 PEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRE 269 (590)
Q Consensus 190 ~~g~im~~~h~~gvQfHPEs~~~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgE 269 (590)
.+|+...++| ++.+... ++|+++.+|++||++|++++|+.|+ +|+++|.|++|||||+++|||
T Consensus 66 ~~g~~v~v~~-------a~~p~S~---~~I~kk~~G~~Ls~eE~~~~i~~i~-------~g~~sd~qiaAfL~Al~~kG~ 128 (490)
T PRK04350 66 SEGDEVEVSH-------APPPESL---SAIRKKIDGEKLDKEEIEAIIRDIV-------AGRYSDIELSAFLTASAINGL 128 (490)
T ss_pred CCCCeEEEec-------CCCCccH---HHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCC
Confidence 4566666655 6777777 6899999999999999999999999 999999999999999999999
Q ss_pred CHHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHh
Q 007779 270 TDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKF 349 (590)
Q Consensus 270 T~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLea 349 (590)
|.+|++++++||++++.+++++..+.+|+|||||||.+|+ |+. +++++|++|++|+|||||++||++|| +|+||+
T Consensus 129 t~~Ei~~lt~AM~~~g~~l~~~~~~~vDkhgTGGd~g~t~--S~~-~apivAA~Gv~VaKhgnRaiss~sGT--aD~LEa 203 (490)
T PRK04350 129 DMDEIEALTRAMVETGERLDWDRPPVVDKHSIGGVPGNRT--TLI-VVPIVAAAGLTIPKTSSRAITSPAGT--ADTMEV 203 (490)
T ss_pred CHHHHHHHHHHHHHhCCcccCCCCCeEEecCCCCCCCCCE--eHH-HHHHHHhCCCceeeecCCCCCCCCch--HHHHHH
Confidence 9999999999999999998876556899999999988886 555 77788999999999999999999999 999999
Q ss_pred cCCCCCCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCC-CCCcchhhhhhhh--------------ccC
Q 007779 350 MGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVR--------------AQG 414 (590)
Q Consensus 350 LGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~Rt-PL~np~k~~~~ln--------------P~~ 414 (590)
|| ++++++++++++++++|++|+|-.+++|||+|++++++|+.++++| |+.... .|| |.+
T Consensus 204 Lg-~v~ls~e~~~~~l~~~G~~flfG~a~~l~PAdk~l~~vR~~l~vds~~li~aS----ImSKKlA~G~~~lvlDVp~G 278 (490)
T PRK04350 204 LA-PVDLSVEEIKRVVEKVGGCLVWGGAVNLSPADDILIRVERPLSIDPRGQLVAS----ILSKKIAAGSTHVVIDIPVG 278 (490)
T ss_pred hh-cCCCCHHHHHHHHHHcCEEEEECCccccCHHHHHHHHHhhhcCCCcHHHHHHH----HhhhHhhcCCCceEEecccC
Confidence 99 9999999999999996555544449999999999999999999999 554332 256 777
Q ss_pred CceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEecCCcEEee
Q 007779 415 REAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQS 494 (590)
Q Consensus 415 ~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~~~g~~~~~ 494 (590)
...+ |++.+..+.+++.|..+|.+.++.+. ..+| ++..
T Consensus 279 ~ga~---v~~~~~A~~LA~~~~~vg~~~g~~v~-----a~lT-------------------------------d~~q--- 316 (490)
T PRK04350 279 PTAK---VRSVEEARRLARLFEEVGDRLGLRVE-----CAIT-------------------------------DGSQ--- 316 (490)
T ss_pred CCCc---CCCHHHHHHHHHHHHHHHHhcCCeEE-----EEEC-------------------------------CCCe---
Confidence 6666 78888899999999888865555541 1111 1110
Q ss_pred eeEEEecCCCCCCCCCCCccCCCHHHHHHHHHHHHCCC---CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 007779 495 FNLEVNASNYGFEPTNTPRADRSVSKNIELGLAALRGE---KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAID 571 (590)
Q Consensus 495 ~~~~i~P~d~Gl~~~~~~~~~~~~~~na~~~~~vL~G~---~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~ 571 (590)
|-.+ +..++.+++...++|+|+ +.+.++.++.||+.+|++.| .+ +.++|+++|+++|+
T Consensus 317 ------PlG~----------~iGnalEv~e~l~vL~g~~~gp~dl~e~~l~lA~~~L~~~g--~~-~~~~g~~~a~~~L~ 377 (490)
T PRK04350 317 ------PIGR----------GIGPALEARDVLAVLENDPDAPNDLREKSLRLAGILLEMGG--VA-PGGEGYALAREILE 377 (490)
T ss_pred ------ehhc----------cCCchHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHh
Confidence 1111 224778889999999994 45689999999999999976 44 99999999999999
Q ss_pred chHHHHHHHHHHHHhcc
Q 007779 572 SGKALKRLLNYIKISHK 588 (590)
Q Consensus 572 SG~A~~~L~~~~~~~~~ 588 (590)
||+|++||++|+++|+.
T Consensus 378 sG~Al~kf~~ii~aQGG 394 (490)
T PRK04350 378 SGKALEKFQEIIEAQGG 394 (490)
T ss_pred CcHHHHHHHHHHHHcCC
Confidence 99999999999999975
No 15
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.8e-48 Score=371.53 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=142.0
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
++|++.||.|| +||+++|.+++|+|||.++..+.. ...||+||||||||+|. |+|+++++
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~----------~~~pd~iviSPGPG~P~---d~G~~~~~- 67 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE----------ALKPDAIVISPGPGTPK---DAGISLEL- 67 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh----------hcCCCEEEEcCCCCChH---HcchHHHH-
Confidence 46899999999 999999999999999977766422 12479999999999999 99999999
Q ss_pred HHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----CC--------ceeEEeccchhccc--cCCCcEEEE
Q 007779 123 LRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EG--------ERRAMNTFWPLLMR--ALPPDVIFI 187 (590)
Q Consensus 123 i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~~--------~~~~~~ryHsl~v~--~~p~~l~v~ 187 (590)
|+++.+++|||| |||||+|+++|||+|.|+ +.|+|||+| +| ++|.++|||||+|+ ++|++|+||
T Consensus 68 i~~~~~~~PiLGVCLGHQai~~~fGg~V~~a-~~~~HGK~s~i~h~g~~iF~glp~~f~v~RYHSLvv~~~~lP~~l~vt 146 (191)
T COG0512 68 IRRFAGRIPILGVCLGHQAIAEAFGGKVVRA-KEPMHGKTSIITHDGSGLFAGLPNPFTVTRYHSLVVDPETLPEELEVT 146 (191)
T ss_pred HHHhcCCCCEEEECccHHHHHHHhCCEEEec-CCCcCCeeeeeecCCcccccCCCCCCEEEeeEEEEecCCCCCCceEEE
Confidence 999988999999 999999999999999999 899999998 23 28999999999995 499999999
Q ss_pred e-ecC-CcEEEEEcC----CCCcccCCC---chhhH-HHHHHHH
Q 007779 188 A-DPE-GSIMGGGGS----IGPHYSGND---PREMR-LVGALRE 221 (590)
Q Consensus 188 a-~~~-g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~k 221 (590)
| ++| |.|||++|+ ||||||||| +.|++ ++|||+.
T Consensus 147 A~~~d~~~IMai~h~~~pi~gvQFHPESilT~~G~~il~Nfl~~ 190 (191)
T COG0512 147 AESEDGGVIMAVRHKKLPIYGVQFHPESILTEYGHRILENFLRL 190 (191)
T ss_pred EEeCCCCEEEEEeeCCCCEEEEecCCccccccchHHHHHHHHhh
Confidence 9 655 599999999 999999999 88888 9999864
No 16
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=8e-45 Score=390.55 Aligned_cols=307 Identities=20% Similarity=0.193 Sum_probs=235.6
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCC-
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA- 291 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~- 291 (590)
|+++++|+++..|++||++|++++|+.|+ +|+++|.|++|||||+|+||||+||+++|++||+++..+++++
T Consensus 2 m~~~~~I~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kG~t~eEi~~lt~Am~~sg~~i~~~~ 74 (440)
T PRK05820 2 FLAQEIIRKKRDGGALSDEEIDWFIDGYT-------DGTVSDGQIAALAMAIFFNGMTRPERVALTLAMRDSGEVLDWSS 74 (440)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcc
Confidence 67899999999999999999999999999 9999999999999999999999999999999999999888764
Q ss_pred ---CCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhc-CCCCCCCHHHHHHHHHh
Q 007779 292 ---DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLED 367 (590)
Q Consensus 292 ---~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaL-Gi~i~~s~e~a~~~Le~ 367 (590)
+.+.+|+|||||||+ |+||+ +|+++|++|++|+|||||++++++|| +|+||+| |++++++++++.++|++
T Consensus 75 ~d~~~~~vDkhgTGGdG~---niS~~-~a~ivAa~Gv~VaKhg~R~lss~~GT--aD~LE~LpG~~v~ls~e~~~~~l~~ 148 (440)
T PRK05820 75 LNLNGPIVDKHSTGGVGD---KISLM-LAPMVAACGGYVPMISGRGLGHTGGT--LDKLEAIPGYRAFPSNDRFREILKD 148 (440)
T ss_pred ccCCCCeEEEcCCCCCCc---cHHHH-HHHHHHhCCCCEEeeCCCCCCCcccH--HHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 234799999999998 89998 99999999999999999999999999 9999999 99999999999999999
Q ss_pred ccCceEeecch-hhChHhHHHHhhhcccCCCC--CCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEE
Q 007779 368 EEIGFAYVSLR-EARPSLYSLIGLREHIKKRP--PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGL 444 (590)
Q Consensus 368 ~g~gf~fl~a~-~~~Pal~~l~~vR~~Lg~Rt--PL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~al 444 (590)
.||+|++++ +|||++++++++|+.++.-. ||.... |-+ +++| .|.++.+
T Consensus 149 --~G~~~~~~~~~l~PAdk~l~~lRdvt~tvds~pli~aS-----------------ImS----KK~A-----~G~~~lv 200 (440)
T PRK05820 149 --VGVAIIGQTSDLAPADKRLYALRDVTATVESIPLITAS-----------------ILS----KKLA-----EGLDALV 200 (440)
T ss_pred --cCeEEEcCchhcChHHHHHHHHhcccCCCChHHHHHHH-----------------HHH----HHHH-----cCCCeEE
Confidence 578888898 99999999999999887655 554332 222 2233 4764443
Q ss_pred E-Ee-cCCCccccccccccccccCCCCccccccccccCccee--EecCCcEEeeeeEEEecCCCCCCCCCCCccCCCHHH
Q 007779 445 V-VK-GEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVEST--FEGDGVSRQSFNLEVNASNYGFEPTNTPRADRSVSK 520 (590)
Q Consensus 445 V-V~-G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v--~~~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~ 520 (590)
+ |+ | .|..--+... ..++ ..+.+ ...-|.- ...--.|+ ..|+.... .+..
T Consensus 201 lDVk~G-~gAfmkt~~~-------------A~~L---a~~mv~ig~~~g~~-----~~a~lTdm---~qPlG~~i-Gnal 254 (440)
T PRK05820 201 LDVKVG-SGAFMKTYEE-------------AREL---ARSMVEVANGAGVR-----TTALLTDM---NQPLASSA-GNAL 254 (440)
T ss_pred EEcCCC-CCCCCCCHHH-------------HHHH---HHHHHHHHHHcCCe-----EEEEEccC---CCcccCcc-chHH
Confidence 3 55 4 3542111000 0000 00111 0111211 11111122 12233322 3444
Q ss_pred HHHHHHHHHCCC--CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 521 NIELGLAALRGE--KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 521 na~~~~~vL~G~--~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
.++...++|+|+ +.+..+.++.-|+.+|++.| .+.+.++|.++++++|+||+|++||.+|+++|+.
T Consensus 255 Ev~Eai~~L~g~~gp~dl~e~~~~la~~ml~~~g--~~~~~~~g~~~~~~~l~sG~Al~kF~~~v~aQGG 322 (440)
T PRK05820 255 EVREAVEFLTGGYRPPRLVEVTMALAAEMLVLAG--LAKDEAEARADLAAVLDSGKAAERFGRMVAAQGG 322 (440)
T ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 455577999998 34466777777888988875 7789999999999999999999999999999975
No 17
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=3.1e-43 Score=380.84 Aligned_cols=322 Identities=18% Similarity=0.180 Sum_probs=246.5
Q ss_pred cCCcEEEEEcCCCCcccCCCchhhHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q 007779 190 PEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRE 269 (590)
Q Consensus 190 ~~g~im~~~h~~gvQfHPEs~~~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgE 269 (590)
.+|+...++| ++.+..+ ++|+++.+|++||++|++++|+.|+ +|+++|.|++|||+|+++|||
T Consensus 71 ~~g~~v~v~~-------~~~p~S~---~~I~kk~~G~~Lt~eE~~~ii~~i~-------~g~~~d~qiaAfL~Al~~kG~ 133 (493)
T TIGR02645 71 REGDIVTVTP-------AEAPESL---RAIRKKIDGAKLDQHEIASIVGDIV-------DERLSDVEISAFLTASAINGM 133 (493)
T ss_pred CCCCEEEEec-------CCCCchH---HHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCC
Confidence 4566666655 7777777 6899999999999999999999999 999999999999999999999
Q ss_pred CHHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHh
Q 007779 270 TDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKF 349 (590)
Q Consensus 270 T~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLea 349 (590)
|.+|++++++||+++..+++++..+.+|+||||||+.++||++ +++++|++|++|+|||||++||++|| +|+||.
T Consensus 134 t~~Ei~~lt~AM~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~---~apIvAA~Gv~VaKhsnRaits~sGT--AD~LE~ 208 (493)
T TIGR02645 134 TMDEIEALTIAMADTGEMLEWDREPIMDKHSIGGVPGNKTSLI---VVPIVAAAGLLIPKTSSRAITSAAGT--ADTMEV 208 (493)
T ss_pred CHHHHHHHHHHHHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH---HHHHHHhCCCCeeeeCCCCcCCCccH--HHHHHH
Confidence 9999999999999999998876556899999999999999883 66777999999999999999999999 999999
Q ss_pred cCCCCCCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCC-CCCcchhhhhhhhccCCceEEEEecCCcch
Q 007779 350 MGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVRAQGREAIVAGFYHEGYE 428 (590)
Q Consensus 350 LGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~Rt-PL~np~k~~~~lnP~~~~~~v~GV~h~~~~ 428 (590)
|| ++++++++++++++++|++|+|-.+++|||++++++++|+.|++.+ ||.... |-+|+
T Consensus 209 Lg-~v~ls~e~~~~~ve~~G~~fl~G~a~~l~PAdk~i~~vR~~l~vds~~li~aS-----------------ImSKK-- 268 (493)
T TIGR02645 209 LT-RVALSAEEIKRIVEKVGGCLVWGGALNLAPADDVLIRVERPLSIDPRAQMLAS-----------------IMSKK-- 268 (493)
T ss_pred hc-CCCCCHHHHHHHHHHCCEEEEECCCcccCHHHHHHHHHHhhcCCCcHHHHHHH-----------------HHHHH--
Confidence 99 9999999999999996555545449999999999999999999998 776432 22333
Q ss_pred HHHHHHHHHcCCceEEE-EecCCCccccccccccccccCCCCccccccccccCccee--EecCCcEEeeeeEEEecCCCC
Q 007779 429 EPLLMLMKRRGVHSGLV-VKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVEST--FEGDGVSRQSFNLEVNASNYG 505 (590)
Q Consensus 429 ~~~a~~l~~lG~~~alV-V~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v--~~~~g~~~~~~~~~i~P~d~G 505 (590)
+| .|.++.++ |+=-.|..--+... ..+|. .+.+ ...-|...+ ..+ .|.
T Consensus 269 --lA-----~G~~~lvlDvk~G~gAf~~~~~~-------------A~~La---~~~~~vg~~~G~~~~---a~i--Tdm- 319 (493)
T TIGR02645 269 --IA-----AGSTHVLIDIPVGPGAKVRSLQE-------------AERLA---RLFIELGDRLGVRVE---CAI--TYG- 319 (493)
T ss_pred --Hh-----cCCCeEEEeccccCCCcCCCHHH-------------HHHHH---HHHHHHHHHcCCeEE---EEE--CCC-
Confidence 34 37766555 44223431000000 00000 0000 001121110 112 122
Q ss_pred CCCCCCCccCCCHHHHHHHHHHHHCCC---CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHH
Q 007779 506 FEPTNTPRADRSVSKNIELGLAALRGE---KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNY 582 (590)
Q Consensus 506 l~~~~~~~~~~~~~~na~~~~~vL~G~---~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~ 582 (590)
..|+.+. ..+.-.++...++|+|+ +.+.++.++.-|+.+|.+.| .+. ..+|+++|++.|+||+|++||++|
T Consensus 320 --~qPlG~~-iGnalEv~Eal~~L~g~~~~p~dL~e~~~~la~~~L~~~g--~~~-~~~g~~~a~~~l~sG~Al~kf~~i 393 (493)
T TIGR02645 320 --SQPIGRG-IGPALEAKEALAVLERSPAAPFSLREKSLLLAGILLEMGG--AAP-RGAGKELARELLDSGKALEKMKEI 393 (493)
T ss_pred --CCccccc-cCcHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhCC--CCC-hHHHHHHHHHHHhCcHHHHHHHHH
Confidence 1233332 24556666688999997 45688999999999999876 454 699999999999999999999999
Q ss_pred HHHhcc
Q 007779 583 IKISHK 588 (590)
Q Consensus 583 ~~~~~~ 588 (590)
+++|+.
T Consensus 394 i~aQGG 399 (493)
T TIGR02645 394 IEAQGG 399 (493)
T ss_pred HHHcCC
Confidence 999975
No 18
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=7.1e-43 Score=373.78 Aligned_cols=306 Identities=18% Similarity=0.180 Sum_probs=234.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCC--C
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA--D 292 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~--~ 292 (590)
+.++|+++.+|++||++|++++|+.|+ +|+++|.|++|||||+++||||.+|+++|++||+++..+++++ +
T Consensus 3 ~~~~I~kk~~G~~Lt~eE~~~~i~~i~-------~g~i~d~QiaAfLmAl~~kG~t~~Ei~~lt~aM~~sg~~i~~~~~~ 75 (437)
T TIGR02643 3 PQEIIRKKRDGHSLSDAEIAQFINGIT-------DGSVSEGQIAAFAMAVFFNGMNRDERVALTLAMRDSGDVLDWRSLD 75 (437)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcccc
Confidence 357899999999999999999999999 9999999999999999999999999999999999999988775 2
Q ss_pred --CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhc-CCCCCCCHHHHHHHHHhcc
Q 007779 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (590)
Q Consensus 293 --~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaL-Gi~i~~s~e~a~~~Le~~g 369 (590)
...+|+|||||||. |+||+ +|+++|++|++|+|||||+++|++|| +|+||+| |++++++++++.++|++
T Consensus 76 ~~~~~vDkhgTGGdG~---niSt~-~apivAA~Gv~VaKhgnR~iss~~GT--aD~LEalpG~~v~ls~e~~~~~l~~-- 147 (437)
T TIGR02643 76 LNGPVVDKHSTGGVGD---VVSLM-LGPIVAACGGYVPMISGRGLGHTGGT--LDKLEAIPGYDIFPDPALFRRVVKD-- 147 (437)
T ss_pred cCCCeeEecCCCCCCc---chhHH-HHHHHHhCCCCeeeecCCCcCCCCch--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 34799999999998 79998 99999999999999999999999999 9999999 99999999999999999
Q ss_pred CceEeec-chhhChHhHHHHhhhcccCCCC--CCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEE-
Q 007779 370 IGFAYVS-LREARPSLYSLIGLREHIKKRP--PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV- 445 (590)
Q Consensus 370 ~gf~fl~-a~~~~Pal~~l~~vR~~Lg~Rt--PL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alV- 445 (590)
.||+|++ ++++||+++.++++|...+.-. ||.... |-+| ++| .|.++.++
T Consensus 148 ~g~~f~gqa~~l~PADk~ly~lRDvt~tVds~pLi~aS-----------------ImSK----KlA-----~g~d~ivlD 201 (437)
T TIGR02643 148 VGVAIIGQTADLAPADKRFYATRDVTATVESIPLITAS-----------------ILSK----KLA-----AGLDALVMD 201 (437)
T ss_pred cCceEEccCCCcCcchhceeeeeeecCCCCcHHHHHHH-----------------HHHH----HHH-----cCCCeEEEE
Confidence 4666676 7999999999999997665443 555432 2222 234 37655544
Q ss_pred EecCCCccccccccccccccCCCCccccccccccCccee--EecCCcEEeeeeEEEecCCCCCCCCCCCccCCCHHHHHH
Q 007779 446 VKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVEST--FEGDGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIE 523 (590)
Q Consensus 446 V~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v--~~~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~ 523 (590)
|+--.|..--+... ..++ ..+.+ ...-|.-.. ..+ .|+ ..|+....+++-| ++
T Consensus 202 Vk~G~gAfmk~~~~-------------A~~L---A~~mv~ig~~~g~~~~---a~i--Tdm---~qPlG~~iGnalE-v~ 256 (437)
T TIGR02643 202 VKVGNGAFMPTYEE-------------SEEL---ARSLVDVANGAGVRTT---ALI--TDM---NQPLASAAGNAVE-VR 256 (437)
T ss_pred cCcCCCCcCCCHHH-------------HHHH---HHHHHHHHHHcCCeEE---EEE--CCC---CCccccccCcHHH-HH
Confidence 55324542111000 0000 00111 011221110 111 122 1233332234444 44
Q ss_pred HHHHHHCCC--CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 524 LGLAALRGE--KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 524 ~~~~vL~G~--~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
...++|+|+ +.+..+.++.-|+.+|.+.| .+.+.++|.+++++.|+||+|++||.+|+++|+.
T Consensus 257 Eai~~L~g~~gp~dl~e~~~~la~~ml~~~g--~~~~~~~~~~~~~~~l~sG~Al~kF~~~v~aQGG 321 (437)
T TIGR02643 257 NAVDFLTGEKRNPRLEDVTMALAAEMLVSGG--LAADEAEARAKLQAVLDSGRAAERFARMVAALGG 321 (437)
T ss_pred HHHHHHCCCCCCccHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 467999997 45688999999999998875 7788999999999999999999999999999974
No 19
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=100.00 E-value=8.9e-42 Score=369.47 Aligned_cols=322 Identities=14% Similarity=0.150 Sum_probs=244.0
Q ss_pred cCCcEEEEEcCCCCcccCCCchhhHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q 007779 190 PEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRE 269 (590)
Q Consensus 190 ~~g~im~~~h~~gvQfHPEs~~~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgE 269 (590)
.+|+...++| ++.+... ++|+++..|++||++|++++|+.|+ +|+++|.|++|||||+++|||
T Consensus 72 ~~g~~v~v~~-------a~~~~s~---~~I~kk~~G~~Ls~eEi~~ii~~i~-------~g~~~d~QiaAfL~Al~~kG~ 134 (500)
T TIGR03327 72 SEGEVVEVTP-------AEKPESV---EYIKKKMDGEKLTKDEIRAIVADIV-------DDKLSDIEISAFVTASYINGM 134 (500)
T ss_pred CCCCEEEEec-------CCCchHH---HHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCC
Confidence 4577666655 6666666 7899999999999999999999999 999999999999999999999
Q ss_pred CHHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHh
Q 007779 270 TDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKF 349 (590)
Q Consensus 270 T~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLea 349 (590)
|.+|++++++||+++..+++++..+.+|+|||||||.++||++ +++++|+||++|+|||||++||++|| +|+||+
T Consensus 135 t~~Eia~lt~AM~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~---~apIVAA~Gv~VaKhsnRaits~sGT--aD~LEs 209 (500)
T TIGR03327 135 DMDEIEWLTRAMAETGDMLSFDRHPIMDKHSIGGVPGNKISLL---VVPIVAAAGLTIPKTSSRAITSAAGT--ADVMEV 209 (500)
T ss_pred CHHHHHHHHHHHHHhCCcccCCCCCeEEEeCCCCCCCCCEEHH---HHHHHHhCCCCeeeeCCCCcCCCccH--HHHHHH
Confidence 9999999999999999988886556899999999999999883 56677999999999999999999999 999999
Q ss_pred cCCCCCCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCC-CCCcchhhhhhhhccCCceEEEEecCCcch
Q 007779 350 MGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVRAQGREAIVAGFYHEGYE 428 (590)
Q Consensus 350 LGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~Rt-PL~np~k~~~~lnP~~~~~~v~GV~h~~~~ 428 (590)
|+ +++++++++.++++++|++|+|-.+++|||++++++.+|+.+.+.+ ||.... |-+|+
T Consensus 210 L~-~v~ls~e~~~~~v~~~G~~fl~Gqa~~l~PAdk~l~alrdt~tvds~~li~aS-----------------ImSKK-- 269 (500)
T TIGR03327 210 LA-PVEFSADEIKRIVEKTGGCLVWGGATNLAPADDKIIKVERPLSIDPRGQMLAS-----------------VMAKK-- 269 (500)
T ss_pred hh-CCCCCHHHHHHHHHHCCEEEEECCccccCHHHHHHHHhccccCCCcHHHHHHH-----------------HHHHH--
Confidence 95 9999999999999996555555448999999999999999777776 665432 22222
Q ss_pred HHHHHHHHHcCCceEEE-EecCCCccccccccccccccCCCCccccccccccCcceeE--ecCCcEEeeeeEEEecCCCC
Q 007779 429 EPLLMLMKRRGVHSGLV-VKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTF--EGDGVSRQSFNLEVNASNYG 505 (590)
Q Consensus 429 ~~~a~~l~~lG~~~alV-V~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~--~~~g~~~~~~~~~i~P~d~G 505 (590)
+| .|.++.++ |+=-.|..--+... ..+| ..+.+. ..-|.... ..+ .|+
T Consensus 270 --lA-----~G~d~lvlDVk~G~gAfm~~~~~-------------A~~L---A~~mv~vg~~~G~~~~---a~i--Tdm- 320 (500)
T TIGR03327 270 --GA-----IGADHVVIDIPVGKGAKVKTVEE-------------GRKL---ARDFIELGDRLGMNVE---CAI--TYG- 320 (500)
T ss_pred --HH-----cCCCeEEEEcCcCCCCcCCCHHH-------------HHHH---HHHHHHHHHHcCCeEE---EEE--CCC-
Confidence 34 37655554 55223432100000 0000 001110 11121110 112 122
Q ss_pred CCCCCCCccCCCHHHHHHHHHHHHCC-C-CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHH
Q 007779 506 FEPTNTPRADRSVSKNIELGLAALRG-E-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYI 583 (590)
Q Consensus 506 l~~~~~~~~~~~~~~na~~~~~vL~G-~-~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~ 583 (590)
..|+.+. ..+.-.++...++|+| + +.+.++.++.-|+.+|.+.| .+. ..+|+++|+++|+||+|++||++|+
T Consensus 321 --~qPlG~~-iGnaLEv~Eal~~L~g~~~p~dL~e~~~~la~~~L~~~g--~~~-~~~g~~~a~~~l~sG~Al~kf~~ii 394 (500)
T TIGR03327 321 --GQPIGRA-IGPALEAKEALKVLEDGEGPNSLIEKSLSLAGILLEMGG--VAP-RGEGKNLALEILESGKALEKFKEII 394 (500)
T ss_pred --CCccccc-cCcHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhCC--CCC-hHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 1233332 2445556667899999 4 56689999999999999876 555 7999999999999999999999999
Q ss_pred HHhcc
Q 007779 584 KISHK 588 (590)
Q Consensus 584 ~~~~~ 588 (590)
++|+.
T Consensus 395 ~aQGG 399 (500)
T TIGR03327 395 AAQGG 399 (500)
T ss_pred HHcCC
Confidence 99975
No 20
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-41 Score=311.03 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=142.5
Q ss_pred eeEeeccccH------HHH-HHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 50 RLTVKADLDS------ALI-DQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 50 ~~~~~~~~d~------~~~-~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
.|.+.||.|| +|| .|+|+++.|+|||++++++... + +|++++||||||+|. |.|++.+.
T Consensus 20 piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~---------~-NP~~LliSPGPG~P~---DsGIs~~~- 85 (223)
T KOG0026|consen 20 PIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKR---------K-NPRGLLISPGPGTPQ---DSGISLQT- 85 (223)
T ss_pred CEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhh---------c-CCCeEEecCCCCCCc---cccchHHH-
Confidence 6899999999 888 8899999999999999987442 1 568999999999999 99999999
Q ss_pred HHHhcCCCCccc-ccchHHHHhHhCceeeccCC-CCcCcccc----CC-----------ceeEEeccchhcc--ccCC-C
Q 007779 123 LRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANA-FPEATQWS----EG-----------ERRAMNTFWPLLM--RALP-P 182 (590)
Q Consensus 123 i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~-~~~hG~~s----~~-----------~~~~~~ryHsl~v--~~~p-~ 182 (590)
|+++.+++|+|| |+|.|+|.++|||+|.++ + .++|||+| |+ ++|.++|||||+. +++| +
T Consensus 86 i~~f~~~iP~fGvCMGlQCi~e~fGGkv~~a-~~~i~HGK~S~i~~D~~~~~G~f~g~~q~~~V~RYHSLa~~~sSlP~d 164 (223)
T KOG0026|consen 86 VLELGPLVPLFGVCMGLQCIGEAFGGKIVRS-PFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDSFPSD 164 (223)
T ss_pred HHHhCCCCceeeeehhhhhhhhhhCcEEecc-CcceeeccccccccCCccccccccCCCCCeEEEeeeeeeeecccCCcc
Confidence 999999999999 999999999999999999 7 78999998 33 2899999999999 6899 8
Q ss_pred cEEEEe-ecCCcEEEEEcC-----CCCcccCCC---chhhH-HHHHHHH
Q 007779 183 DVIFIA-DPEGSIMGGGGS-----IGPHYSGND---PREMR-LVGALRE 221 (590)
Q Consensus 183 ~l~v~a-~~~g~im~~~h~-----~gvQfHPEs---~~~m~-L~~~L~k 221 (590)
+|+||| ++||.|||.||+ .|||||||| +.|.. ++|||+-
T Consensus 165 ~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni 213 (223)
T KOG0026|consen 165 ELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKI 213 (223)
T ss_pred ceeeeEeccCcEEEeeeccccccccceeecchhhhhhhhHHHHHHHHHh
Confidence 999999 999999999999 899999999 77776 7888753
No 21
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=5.9e-35 Score=284.63 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=135.7
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|++.||.|| +||+++|.++.|+|||+++.++.. ...||+||||||||+|. +.+...++ ++
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~----------~~~~d~iils~GPg~p~---~~~~~~~~-~~ 67 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID----------ALKPQKIVISPGPCTPD---EAGISLDV-IR 67 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH----------hcCCCEEEEcCCCCChH---HCCccHHH-HH
Confidence 799999999 889999999999999988765422 11468999999999999 77778888 88
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccc--cCCCcEEEEe-
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMR--ALPPDVIFIA- 188 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~--~~p~~l~v~a- 188 (590)
.+..++|+|| |||||+|+.+|||+|.++ +.++||+++ + ..++.+++|||+.|+ ++|++++++|
T Consensus 68 ~~~~~~PiLGIClG~Q~la~a~Gg~v~~~-~~~~~g~~~~v~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~ 146 (187)
T PRK08007 68 HYAGRLPILGVCLGHQAMAQAFGGKVVRA-AKVMHGKTSPITHNGEGVFRGLANPLTVTRYHSLVVEPDSLPACFEVTAW 146 (187)
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCEEEeC-CCcccCCceEEEECCCCcccCCCCCcEEEEcchhEEccCCCCCCeEEEEE
Confidence 8888999999 999999999999999999 899999875 1 125899999999995 8999999999
Q ss_pred ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHH
Q 007779 189 DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALR 220 (590)
Q Consensus 189 ~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~ 220 (590)
++||.|||++|+ ||||||||| +.|+. |++|+.
T Consensus 147 ~~~~~i~a~~~~~~~i~GvQfHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 147 SETREIMGIRHRQWDLEGVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred eCCCcEEEEEeCCCCEEEEEeCCcccCCcchHHHHHHHhh
Confidence 889999999998 899999998 66776 888875
No 22
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=100.00 E-value=8.8e-35 Score=334.92 Aligned_cols=167 Identities=17% Similarity=0.151 Sum_probs=141.8
Q ss_pred ceeEeeccccH------HHHHHh-CCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHH
Q 007779 49 IRLTVKADLDS------ALIDQL-GLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDT 121 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~l-g~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~ 121 (590)
+++++.||.|| +||+++ |.++.|+|||+++.+++...... +..||+||||||||+|.+.+++|+++++
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~-----~~~~d~IVlSPGPG~P~~~~d~Gi~~~~ 156 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYE-----EKAFDNIVISPGPGSPTCPADIGICLRL 156 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhc-----ccCCCEEEECCCCCCccchHHHHHHHHH
Confidence 58999999999 889998 99999999999877653210000 2357999999999999888899999999
Q ss_pred HHHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----CC--------c----eeEEeccchhcc--ccCCC
Q 007779 122 ILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EG--------E----RRAMNTFWPLLM--RALPP 182 (590)
Q Consensus 122 ~i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~~--------~----~~~~~ryHsl~v--~~~p~ 182 (590)
|+++ .++|||| |||||+|+++|||+|.++ +.++||+++ ++ . .|.++|||||+| .++|+
T Consensus 157 -i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~-~~~~HG~~s~I~h~~~~lF~glp~~~~~~f~v~RYHSL~v~~~~lP~ 233 (918)
T PLN02889 157 -LLEC-RDIPILGVCLGHQALGYVHGARIVHA-PEPVHGRLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPK 233 (918)
T ss_pred -HHHh-CCCcEEEEcHHHHHHHHhcCceEEeC-CCceeeeeeeEeecCchhhcCCCcCCCCCceEEeCCCcccccCCCCC
Confidence 7765 4699999 999999999999999999 899999987 11 1 499999999999 47999
Q ss_pred cEEEEe-ecC-----------------------------------------------------CcEEEEEcC----CCCc
Q 007779 183 DVIFIA-DPE-----------------------------------------------------GSIMGGGGS----IGPH 204 (590)
Q Consensus 183 ~l~v~a-~~~-----------------------------------------------------g~im~~~h~----~gvQ 204 (590)
+|+++| +++ +.|||++|+ ||||
T Consensus 234 ~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~GVQ 313 (918)
T PLN02889 234 ELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQ 313 (918)
T ss_pred ceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCceEEEE
Confidence 999999 644 589999999 9999
Q ss_pred ccCCC---chhhH-HHHHHHHhh
Q 007779 205 YSGND---PREMR-LVGALREVL 223 (590)
Q Consensus 205 fHPEs---~~~m~-L~~~L~kl~ 223 (590)
||||| +.|.. |.||++...
T Consensus 314 fHPESi~t~~G~~l~~nF~~~~~ 336 (918)
T PLN02889 314 FHPESIATCYGRQIFKNFREITQ 336 (918)
T ss_pred eCCccccCchhHHHHHHHHHHHH
Confidence 99999 77777 999997654
No 23
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.97 E-value=5e-32 Score=265.83 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=135.8
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|+++||.|| .||+++|.++.|+|+|+++.+++. ...+|+||||||||+|. +.+...+. ++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~----------~~~~d~iIlsgGP~~p~---~~~~~~~~-i~ 67 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE----------NMKPDFLMISPGPCSPN---EAGISMEV-IR 67 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh----------hCCCCEEEECCCCCChH---hCCCchHH-HH
Confidence 799999999 888999999999999987665422 12569999999999999 77777777 88
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----CC--------ceeEEeccchhcc--ccCCCcEEEEe-
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EG--------ERRAMNTFWPLLM--RALPPDVIFIA- 188 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~~--------~~~~~~ryHsl~v--~~~p~~l~v~a- 188 (590)
.+..++|+|| |||||+|+.++||+|.+. +.++||.+. ++ ..+.+.+|||+.| .++|++++++|
T Consensus 68 ~~~~~~PvLGIClG~Qlla~~lGg~V~~~-~~~~~G~~~~i~~~~~~lf~~~~~~~~v~~~H~~~v~~~~lp~~~~~~a~ 146 (195)
T PRK07649 68 YFAGKIPIFGVCLGHQSIAQVFGGEVVRA-ERLMHGKTSLMHHDGKTIFSDIPNPFTATRYHSLIVKKETLPDCLEVTSW 146 (195)
T ss_pred HhcCCCCEEEEcHHHHHHHHHcCCEEeeC-CCcccCCeEEEEECCChhhcCCCCCCEEEEechheEecccCCCCeEEEEE
Confidence 8888999999 999999999999999999 789999975 22 2589999999999 37999999999
Q ss_pred ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHh
Q 007779 189 DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREV 222 (590)
Q Consensus 189 ~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl 222 (590)
++++.|||++|+ ||||||||| +.|.+ +++|++..
T Consensus 147 s~~~~v~a~~~~~~~i~gvQFHPE~~~t~~g~~il~nfl~~~ 188 (195)
T PRK07649 147 TEEGEIMAIRHKTLPIEGVQFHPESIMTSHGKELLQNFIRKY 188 (195)
T ss_pred cCCCcEEEEEECCCCEEEEEECCCCCCCccHHHHHHHHHHHh
Confidence 889999999998 999999997 46666 89998754
No 24
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.97 E-value=2.1e-31 Score=259.92 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=132.2
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|++.||.|| .|++++|.++.|++||..+.++.. + + .+|+||||||||+|. +.+...++ ++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~----~-----~-~~d~iilsgGpg~p~---~~~~~~~~-i~ 67 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE----A-----L-LPLLIVISPGPCTPN---EAGISLEA-IR 67 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH----h-----c-CCCEEEEcCCCCChh---hcchhHHH-HH
Confidence 799999999 788888999999999987665422 1 2 468999999999998 55556777 88
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----CC--------ceeEEeccchhcc--ccCCCcEEEEe-
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EG--------ERRAMNTFWPLLM--RALPPDVIFIA- 188 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~~--------~~~~~~ryHsl~v--~~~p~~l~v~a- 188 (590)
++..++|+|| |+|||.|+.++||+|.+. +.+.||+++ ++ +++.+.+|||+.| .++|+.++++|
T Consensus 68 ~~~~~~PvLGIC~G~Qll~~~~GG~v~~~-~~~~~g~~~~v~~~~~~~~~~l~~~~~v~~~H~~~v~~~~l~~~~~v~a~ 146 (188)
T TIGR00566 68 HFAGKLPILGVCLGHQAMGQAFGGDVVRA-NTVMHGKTSEIEHNGAGIFRGLFNPLTATRYHSLVVEPETLPTCFPVTAW 146 (188)
T ss_pred HhccCCCEEEECHHHHHHHHHcCCEEeeC-CCccccceEEEEECCCccccCCCCCcEEEEcccceEecccCCCceEEEEE
Confidence 8877899999 999999999999999999 889999774 11 2589999999999 48999999999
Q ss_pred ecC-CcEEEEEcC----CCCcccCCC---chhhH-HHHHHHH
Q 007779 189 DPE-GSIMGGGGS----IGPHYSGND---PREMR-LVGALRE 221 (590)
Q Consensus 189 ~~~-g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~k 221 (590)
+++ |.|||++|+ ||||||||+ +.|.. +++|+++
T Consensus 147 s~~~~~v~a~~~~~~~i~gvQfHPE~~~t~~G~~il~nfl~~ 188 (188)
T TIGR00566 147 EEENIEIMAIRHRDLPLEGVQFHPESILSEQGHQLLANFLHR 188 (188)
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCccCCcccHHHHHHHHhC
Confidence 665 599999998 999999998 67777 8888753
No 25
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.97 E-value=9e-30 Score=267.35 Aligned_cols=309 Identities=19% Similarity=0.211 Sum_probs=230.9
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~ 292 (590)
|+..++|+|..+|+.||.+|..++++.+. +|+++|.|++||+||..++|+|.+|++.++.||++....+++.+
T Consensus 2 ~~~v~iI~KKrdG~~L~~~EI~~~i~~~~-------~~~i~D~Q~sAf~mAi~f~gM~~~E~~~lT~AMv~SGe~ld~~~ 74 (435)
T COG0213 2 MRSVEIIRKKRDGKALSKEEIEFFINGYV-------NGTIPDYQISAFLMAIFFRGMTMDEIAALTMAMVDSGEVLDLSD 74 (435)
T ss_pred CchHHHHHHhcccccCCHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCEEeecc
Confidence 56789999999999999999999999999 99999999999999999999999999999999999998888765
Q ss_pred C--CCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhc-CCCCCCCHHHHHHHHHhcc
Q 007779 293 V--KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (590)
Q Consensus 293 ~--~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaL-Gi~i~~s~e~a~~~Le~~g 369 (590)
. +.+|.|+|||-|.++..+ ++.++|+||++|+|..+|++++.+|+ .|.||.+ |++++++.++..+.+.++|
T Consensus 75 ~~~~~vDKHStGGVgdk~sL~----l~PiVAA~Gl~VpK~SgRgLghtGGT--~DklEsi~g~~~~~~e~~fi~~~~~~g 148 (435)
T COG0213 75 IPGPVVDKHSTGGVGDKTSLI----LVPIVAAAGLPVPKMSGRGLGHTGGT--LDKLESIPGVNLELDEIKFIEQVKDNG 148 (435)
T ss_pred CCCceecccCCCCCCcccchh----HHHHHHhcCCcccccccCccccCccc--hhhhhccCCcccCcCHHHHHHHhhcCC
Confidence 3 479999999999654333 66699999999999999999999999 9999999 9999999999999999843
Q ss_pred CceEeecchhhChHhHHHHhhhcccC-CCC-CCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEE-E
Q 007779 370 IGFAYVSLREARPSLYSLIGLREHIK-KRP-PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV-V 446 (590)
Q Consensus 370 ~gf~fl~a~~~~Pal~~l~~vR~~Lg-~Rt-PL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alV-V 446 (590)
. ++|--+.++.|+.++++.+|+.++ +.+ ||.... |- ..++| .|.+..++ |
T Consensus 149 ~-aiiGqs~~LaPADkklyalrdvtaTVdsipLiasS-----------------IM----SKKlA-----~G~~~ivlDV 201 (435)
T COG0213 149 V-AIIGQSGNLAPADKKLYALRDVTATVDSIPLIASS-----------------IM----SKKLA-----AGADAIVLDV 201 (435)
T ss_pred e-EEEeCcCCcCcccceeEEeeeccccCCcHHHHHHH-----------------HH----HHHHh-----ccCCcEEEEe
Confidence 2 334434589999999999999998 444 666432 11 12233 36544433 5
Q ss_pred ecCCCccccccccccccccCCCCccccccccccCcceeEe--cCCcEEeeeeEEEecCCCCCCCCCCCccCCCHHHHHHH
Q 007779 447 KGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE--GDGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIEL 524 (590)
Q Consensus 447 ~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~--~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~~ 524 (590)
+=-.|..--+.. .. .+|. ...+-. .-|+... ..+ .|+ ..++.+..++ +-.++.
T Consensus 202 kvG~GAfmkt~~-~a------------~~LA---~~mv~ig~~~g~~t~---a~i--Tdm---~QPLG~aiGn-alEv~E 256 (435)
T COG0213 202 KVGSGAFMKTVE-DA------------RELA---KAMVEIGKGLGRKTT---AVI--TDM---NQPLGRAIGN-ALEVRE 256 (435)
T ss_pred cccCCCccCCHH-HH------------HHHH---HHHHHHHHhcCCeEE---EEE--cCC---CCchhhhhcc-HHHHHH
Confidence 532454211100 00 0000 011100 1122111 112 122 1233332233 444455
Q ss_pred HHHHHCCC-CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 525 GLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 525 ~~~vL~G~-~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
..++|.|+ +.+..+.++.-|+.+|.+.| .+.+.+||.+++++.|+||+|++||.+|++.|+.
T Consensus 257 al~~L~g~~p~dL~e~~l~la~~mL~~~g--~a~~~~~a~~~~~~vl~sGkA~ekF~~~v~aQGG 319 (435)
T COG0213 257 ALETLKGKGPPDLVELSLALAGEMLEMTG--LAKTGEEAKAKAREVLESGKALEKFKEIVAAQGG 319 (435)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHcC--ccCccHHHHHHHHHHHhCchHHHHHHHHHHHhCC
Confidence 67899996 45689999999999998865 7899999999999999999999999999999974
No 26
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.97 E-value=1.4e-30 Score=254.43 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=130.8
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|++.||.|| +||+++|.+++|++||.++.+++.. + .||+||||||||+|. +.+...++ ++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~---------~-~~~~iilsgGP~~~~---~~~~~~~~-i~ 67 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ---------L-APSHLVISPGPCTPN---EAGISLAV-IR 67 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh---------c-CCCeEEEcCCCCChH---hCCCchHH-HH
Confidence 799999999 8899999999999999887765321 1 568999999999998 67777787 88
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----------C--CceeEEeccchhcc--ccCCCcEEEEe-
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----------E--GERRAMNTFWPLLM--RALPPDVIFIA- 188 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----------~--~~~~~~~ryHsl~v--~~~p~~l~v~a- 188 (590)
.+..++|+|| |+|||.|+.+|||+|.+. +.+.||.++ . ...+.+.+|||+.| .++|++++++|
T Consensus 68 ~~~~~~PiLGIC~G~Qlla~~~GG~v~~~-~~~~~G~~~~~~~~~~~lf~~l~~~~~v~~~Hs~~v~~~~lp~~~~vlA~ 146 (191)
T PRK06774 68 HFADKLPILGVCLGHQALGQAFGARVVRA-RQVMHGKTSAICHSGQGVFRGLNQPLTVTRYHSLVIAADSLPGCFELTAW 146 (191)
T ss_pred HhcCCCCEEEECHHHHHHHHHhCCEEEeC-CcceecceEEEEecCchhhcCCCCCcEEEEeCcceeeccCCCCCeEEEEE
Confidence 8888999999 999999999999999999 678899654 1 13689999999999 47899999999
Q ss_pred ec-CC---cEEEEEcC----CCCcccCCC---chhhH-HHHHHH
Q 007779 189 DP-EG---SIMGGGGS----IGPHYSGND---PREMR-LVGALR 220 (590)
Q Consensus 189 ~~-~g---~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~ 220 (590)
++ ++ .|||++|+ ||||||||+ +.|.+ +++|++
T Consensus 147 s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 147 SERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred eCCCCCcceEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHHhh
Confidence 55 33 59999997 999999998 55665 777764
No 27
>PLN02335 anthranilate synthase
Probab=99.96 E-value=1.2e-29 Score=253.60 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=133.9
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
.+|+++|+.|| .+|+++|+++.|+|+|.++.++.. ...+|+||||||||+|. |.+..++.
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~----------~~~~d~iVisgGPg~p~---d~~~~~~~- 84 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK----------RKNPRGVLISPGPGTPQ---DSGISLQT- 84 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH----------hcCCCEEEEcCCCCChh---hccchHHH-
Confidence 37899999999 889999999999999977665321 12468999999999998 77777888
Q ss_pred HHHhcCCCCccc-ccchHHHHhHhCceeeccCCC-CcCccccC------C---------ceeEEeccchhccc--cCCCc
Q 007779 123 LRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAF-PEATQWSE------G---------ERRAMNTFWPLLMR--ALPPD 183 (590)
Q Consensus 123 i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~-~~hG~~s~------~---------~~~~~~ryHsl~v~--~~p~~ 183 (590)
++.+..++|+|| |||||+|+.++||+|.++ +. ++||.+.. + ..+.+.+||++.|+ .+|+.
T Consensus 85 ~~~~~~~~PiLGIClG~QlLa~alGg~v~~~-~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~ 163 (222)
T PLN02335 85 VLELGPLVPLFGVCMGLQCIGEAFGGKIVRS-PFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSD 163 (222)
T ss_pred HHHhCCCCCEEEecHHHHHHHHHhCCEEEeC-CCccccCceeeeEECCCCCChhhhCCCCCCEEEechhheEecccCCCC
Confidence 788877899999 999999999999999999 54 58988761 1 25889999999994 78886
Q ss_pred -EEEEe-ecCCcEEEEEcC-----CCCcccCCC---chhhH-HHHHHHHh
Q 007779 184 -VIFIA-DPEGSIMGGGGS-----IGPHYSGND---PREMR-LVGALREV 222 (590)
Q Consensus 184 -l~v~a-~~~g~im~~~h~-----~gvQfHPEs---~~~m~-L~~~L~kl 222 (590)
++++| ++||.||+++|+ ||||||||+ +.|.. +++|++.+
T Consensus 164 ~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~ 213 (222)
T PLN02335 164 ELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKII 213 (222)
T ss_pred ceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHH
Confidence 99999 889999999997 899999998 56666 88888654
No 28
>CHL00101 trpG anthranilate synthase component 2
Probab=99.96 E-value=1.3e-29 Score=247.69 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=131.3
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|++.||-|| .+|+++|.++.|+++|.++.+... ...+|+||||||||+|. +.+...++ ++
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~----------~~~~dgiiisgGpg~~~---~~~~~~~i-~~ 67 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIK----------NLNIRHIIISPGPGHPR---DSGISLDV-IS 67 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHh----------hCCCCEEEECCCCCChH---HCcchHHH-HH
Confidence 799999999 778888999999999977664311 12579999999999998 66666666 77
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccc--cCCCcEEEEe-
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMR--ALPPDVIFIA- 188 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~--~~p~~l~v~a- 188 (590)
.+..++|+|| |+|||+|+.++||+|.+. +.++||.+. + ...+.+.+||++.|+ ++|++++++|
T Consensus 68 ~~~~~~PiLGIClG~Qlla~~~Gg~V~~~-~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~vla~ 146 (190)
T CHL00101 68 SYAPYIPILGVCLGHQSIGYLFGGKIIKA-PKPMHGKTSKIYHNHDDLFQGLPNPFTATRYHSLIIDPLNLPSPLEITAW 146 (190)
T ss_pred HhcCCCcEEEEchhHHHHHHHhCCEEEEC-CCcccCceeeEeeCCcHhhccCCCceEEEcchhheeecccCCCceEEEEE
Confidence 7788899999 999999999999999999 888999875 1 125899999999995 7999999999
Q ss_pred ecCCcEEEEEcC-----CCCcccCCC---chhhH-HHHHHH
Q 007779 189 DPEGSIMGGGGS-----IGPHYSGND---PREMR-LVGALR 220 (590)
Q Consensus 189 ~~~g~im~~~h~-----~gvQfHPEs---~~~m~-L~~~L~ 220 (590)
+++|.+||++|+ ||||||||+ +.|.. +++|++
T Consensus 147 s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~ 187 (190)
T CHL00101 147 TEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRNFLS 187 (190)
T ss_pred cCCCcEEEEEeCCCCCEEEEEeCCccCCChhHHHHHHHHHh
Confidence 889999999996 799999998 45665 777765
No 29
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.96 E-value=1.4e-29 Score=250.75 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=130.9
Q ss_pred eeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 50 RLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 50 ~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
+|++.|+.|| ++|+++|..++|+++|. +.++.. ...||+||||||||+|. |++...++ +
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~-~~~~l~----------~~~~~~iIlsgGPg~~~---d~~~~~~l-i 67 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTV-PVEEIL----------AANPDLICLSPGPGHPR---DAGNMMAL-I 67 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCC-CHHHHH----------hcCCCEEEEeCCCCCHH---HhhHHHHH-H
Confidence 6899999999 78889999999999983 343311 12568999999999998 77777777 7
Q ss_pred HHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc--------------CC--------------ceeEEeccch
Q 007779 124 RSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS--------------EG--------------ERRAMNTFWP 174 (590)
Q Consensus 124 ~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s--------------~~--------------~~~~~~ryHs 174 (590)
+.+.+++|+|| |||||.|+.++||+|.+. . ++||.+. .+ +++.+++||+
T Consensus 68 ~~~~~~~PiLGIClG~Qlla~alGG~V~~~-~-~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~ 145 (208)
T PRK05637 68 DRTLGQIPLLGICLGFQALLEHHGGKVEPC-G-PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHS 145 (208)
T ss_pred HHHhCCCCEEEEcHHHHHHHHHcCCeeccC-C-cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEech
Confidence 77667899999 999999999999999987 4 5777642 01 2478999999
Q ss_pred hccccCCCcEEEEe-ecC---CcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhhc
Q 007779 175 LLMRALPPDVIFIA-DPE---GSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLA 224 (590)
Q Consensus 175 l~v~~~p~~l~v~a-~~~---g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~~ 224 (590)
+.|..+|++++++| +++ +.+|+++|+ ||||||||| +.|+. |+|||++++.
T Consensus 146 ~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl~~~~~ 207 (208)
T PRK05637 146 LGCVVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCVEQLLA 207 (208)
T ss_pred hhhhcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHHHHHhc
Confidence 99999999999999 544 368999876 999999999 77887 9999998764
No 30
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.96 E-value=3.2e-29 Score=244.63 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=132.3
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
++|++.||.|| ++|+++|.++.|+++|..+.++ ++.+|+|||+||||.|. +.+.+.++
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~------------l~~~d~iIi~gGp~~~~---~~~~~~~~- 65 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDE------------VENFSHILISPGPDVPR---AYPQLFAM- 65 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhH------------hccCCEEEECCCCCChH---HhhHHHHH-
Confidence 58999999999 8899999999999998643322 45679999999999997 66777777
Q ss_pred HHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc-----C--------CceeEEeccchhccc--cCCCcEEE
Q 007779 123 LRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS-----E--------GERRAMNTFWPLLMR--ALPPDVIF 186 (590)
Q Consensus 123 i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s-----~--------~~~~~~~ryHsl~v~--~~p~~l~v 186 (590)
|+.+..++|+|| |||||+|+.++||+|.++ +.+.||++. + .+.+.+.+|||+.+. ++|+.+.+
T Consensus 66 i~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~-~~~~~g~~~~v~~~~~~~l~~~~~~~~~v~~~Hs~~v~~~~lp~~l~~ 144 (190)
T PRK06895 66 LERYHQHKSILGVCLGHQTLCEFFGGELYNL-NNVRHGQQRPLKVRSNSPLFDGLPEEFNIGLYHSWAVSEENFPTPLEI 144 (190)
T ss_pred HHHhcCCCCEEEEcHHHHHHHHHhCCeEeec-CCCccCceEEEEECCCChhhhcCCCceEEEcchhheecccccCCCeEE
Confidence 788878899999 999999999999999998 778999875 1 136789999999995 68999999
Q ss_pred Ee-ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHH
Q 007779 187 IA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALR 220 (590)
Q Consensus 187 ~a-~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~ 220 (590)
++ ++++.+||++|+ ||+|||||+ +.|.. ++||++
T Consensus 145 ~a~~~~~~i~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 145 TAVCDENVVMAMQHKTLPIYGVQFHPESYISEFGEQILRNWLA 187 (190)
T ss_pred EEECCCCcEEEEEECCCCEEEEEeCCCcCCCcchHHHHHHHHh
Confidence 99 778899999997 999999997 56665 888875
No 31
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.96 E-value=4.2e-29 Score=244.52 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=129.8
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|++.||.|| .+|+++|..+.++++|+.+..... . + .+|+||+||||++|. +.+...++ ++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~----~-----~-~~~~iilsgGp~~~~---~~~~~~~~-i~ 67 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIE----A-----L-NPTHLVISPGPCTPN---EAGISLQA-IE 67 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHh----h-----C-CCCEEEEeCCCCChH---HCcchHHH-HH
Confidence 799999999 778899999999999976543211 0 2 468999999999998 55666777 78
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccc--cCCCcEEEEe-
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMR--ALPPDVIFIA- 188 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~--~~p~~l~v~a- 188 (590)
.+..++|+|| |||||.|+.++||+|.+. +.+.||.+. + ...+.+.+|||+.|+ ++|++++++|
T Consensus 68 ~~~~~~PiLGIClG~Qlia~a~Gg~v~~~-~~~~~G~~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~ 146 (193)
T PRK08857 68 HFAGKLPILGVCLGHQAIAQVFGGQVVRA-RQVMHGKTSPIRHTGRSVFKGLNNPLTVTRYHSLVVKNDTLPECFELTAW 146 (193)
T ss_pred HhcCCCCEEEEcHHHHHHHHHhCCEEEeC-CCceeCceEEEEECCCcccccCCCccEEEEccEEEEEcCCCCCCeEEEEE
Confidence 8888899999 999999999999999999 788999843 1 125889999999985 8999999999
Q ss_pred ec--CC---cEEEEEcC----CCCcccCCC---chhhH-HHHHHHH
Q 007779 189 DP--EG---SIMGGGGS----IGPHYSGND---PREMR-LVGALRE 221 (590)
Q Consensus 189 ~~--~g---~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~k 221 (590)
++ |+ .|||++|+ ||||||||+ +.|.. +++|+++
T Consensus 147 s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 147 TELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred ecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHHHhh
Confidence 54 43 59999998 999999998 56766 8888764
No 32
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.5e-28 Score=261.10 Aligned_cols=166 Identities=19% Similarity=0.211 Sum_probs=130.8
Q ss_pred ccceeEeeccccH------HHHHHh-CCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHH
Q 007779 47 RRIRLTVKADLDS------ALIDQL-GLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVL 119 (590)
Q Consensus 47 ~~~~~~~~~~~d~------~~~~~l-g~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~ 119 (590)
+|.++++.|+.|| +++.+. |....|++||+-..++....+.. .-++|+||+|||||+|..+++.|++.
T Consensus 13 ~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q-----~~~FDaIVVgPGPG~P~~a~d~gI~~ 87 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQ-----DVAFDAIVVGPGPGSPMCAADIGICL 87 (767)
T ss_pred hheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhh-----ccccceEEecCCCCCCCcHHHHHHHH
Confidence 3789999999999 444444 77888888886554432211111 22579999999999998889999999
Q ss_pred HHHHHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C----------C--ceeEEeccchhccccCCC
Q 007779 120 DTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E----------G--ERRAMNTFWPLLMRALPP 182 (590)
Q Consensus 120 ~~~i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~----------~--~~~~~~ryHsl~v~~~p~ 182 (590)
++ +.... ++|||| |||||+||.++||.|..+ ..|.||++| + | ..|.++|||||.|+++|-
T Consensus 88 rl-~~~~~-~iPilGICLGfQal~l~hGA~v~~~-n~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in~~pi 164 (767)
T KOG1224|consen 88 RL-LLECR-DIPILGICLGFQALGLVHGAHVVHA-NEPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIINSLPI 164 (767)
T ss_pred HH-HHhcC-CCceeeeehhhHhHhhhcccceecC-CCcccceeeeEEecCcEEEccCCCCCcccceeEEeEEEEecCCch
Confidence 98 87764 899999 999999999999999999 799999998 1 2 279999999999999997
Q ss_pred cE-EEEe-e-cCC--cEEEEEcC----CCCcccCCC---chhhH-HHHHHH
Q 007779 183 DV-IFIA-D-PEG--SIMGGGGS----IGPHYSGND---PREMR-LVGALR 220 (590)
Q Consensus 183 ~l-~v~a-~-~~g--~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~ 220 (590)
++ .+.+ + +|+ .+|++.|+ ||+|||||| +.|.. ++|||.
T Consensus 165 d~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkNFl~ 215 (767)
T KOG1224|consen 165 DLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKNFLD 215 (767)
T ss_pred hhhcceeEeecCCceEEEEeeccCCCccceeeChHHhhhhhhHHHHHHHHH
Confidence 64 4444 3 333 59999998 999999999 55544 777764
No 33
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.95 E-value=3.2e-27 Score=230.35 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=129.3
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|++.|+=|| .+|+++|.++.|+++|..+..... . + .+|+||||||||+|. +++...++ ++
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~----~-----~-~~dglIlsgGpg~~~---d~~~~~~~-l~ 67 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIE----A-----L-NPDAIVLSPGPGTPA---EAGISLEL-IR 67 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHH----h-----C-CCCEEEEcCCCCChH---HcchHHHH-HH
Confidence 788999998 778888999999999865543311 1 2 369999999999998 77777777 88
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccc--cCCCcEEEEe-
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMR--ALPPDVIFIA- 188 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~--~~p~~l~v~a- 188 (590)
.+..++|+|| |+|||.|+.++||+|.+. +.+.||.+. . ...+.+.+||++.|. ++|+.++++|
T Consensus 68 ~~~~~~PvLGIClG~Qlla~alGg~v~~~-~~~~~g~~~~v~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~~la~ 146 (189)
T PRK05670 68 EFAGKVPILGVCLGHQAIGEAFGGKVVRA-KEIMHGKTSPIEHDGSGIFAGLPNPFTVTRYHSLVVDRESLPDCLEVTAW 146 (189)
T ss_pred HhcCCCCEEEECHHHHHHHHHhCCEEEec-CCcccCceeEEEeCCCchhccCCCCcEEEcchhheeccccCCCceEEEEE
Confidence 8877899999 999999999999999999 788899654 1 125789999999994 5999999999
Q ss_pred ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHH
Q 007779 189 DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALRE 221 (590)
Q Consensus 189 ~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~k 221 (590)
++++.+||++|+ ||||||||+ +.+.+ +++|++.
T Consensus 147 s~~~~i~a~~~~~~~~~gvQfHPE~~~~~~g~~i~~~F~~~ 187 (189)
T PRK05670 147 TDDGEIMGVRHKELPIYGVQFHPESILTEHGHKLLENFLEL 187 (189)
T ss_pred eCCCcEEEEEECCCCEEEEeeCCCcCCCcchHHHHHHHHHh
Confidence 888999999985 999999998 34555 7777764
No 34
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.94 E-value=1.2e-27 Score=256.04 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=117.0
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHHhcCCCCccc-ccch
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSK 138 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~~~~~PilG-CLGh 138 (590)
.+|.++|++++|+++|. +.+++. -..+|+||||||||+|. ++....+. ++++.+++|+|| ||||
T Consensus 256 r~L~~~G~~v~VvP~~~-~~~ei~----------~~~pDGIiLSnGPGDP~---~~~~~ie~-ik~l~~~iPIlGICLGh 320 (415)
T PLN02771 256 RRLASYGCKITVVPSTW-PASEAL----------KMKPDGVLFSNGPGDPS---AVPYAVET-VKELLGKVPVFGICMGH 320 (415)
T ss_pred HHHHHcCCeEEEECCCC-CHHHHh----------hcCCCEEEEcCCCCChh---HhhHHHHH-HHHHHhCCCEEEEcHHH
Confidence 56777899999999985 233211 11579999999999998 77888888 888767899999 9999
Q ss_pred HHHHhHhCceeeccCCCCcCcccc------CCceeEEeccchhcc--ccCCCcEEEEe-e-cCCcEEEEEcC----CCCc
Q 007779 139 AQLGAFFSAMTIRANAFPEATQWS------EGERRAMNTFWPLLM--RALPPDVIFIA-D-PEGSIMGGGGS----IGPH 204 (590)
Q Consensus 139 Q~i~~~~G~~v~~~~~~~~hG~~s------~~~~~~~~ryHsl~v--~~~p~~l~v~a-~-~~g~im~~~h~----~gvQ 204 (590)
|+|+.++||+|.|+ ++++||.++ +++...++|||++.| +++|+++++++ + +||+|||++|+ ||||
T Consensus 321 QlLa~AlGGkv~K~-~~Gh~G~n~pV~~~~~~~v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQ 399 (415)
T PLN02771 321 QLLGQALGGKTFKM-KFGHHGGNHPVRNNRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQ 399 (415)
T ss_pred HHHHHhcCCeEEEC-CCCcccceEEEEECCCCCEEEEecCHHHhhccccCCCceEEEEEeCCCCcEEEEEECCCCEEEEE
Confidence 99999999999999 999999987 356778899999999 58999999999 4 79999999999 9999
Q ss_pred ccCCCch
Q 007779 205 YSGNDPR 211 (590)
Q Consensus 205 fHPEs~~ 211 (590)
||||+..
T Consensus 400 FHPEa~p 406 (415)
T PLN02771 400 YHPEASP 406 (415)
T ss_pred cCCCCCC
Confidence 9999843
No 35
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.94 E-value=6e-27 Score=242.24 Aligned_cols=158 Identities=11% Similarity=0.084 Sum_probs=125.4
Q ss_pred ceeEeecc-ccHHHHHHh---CCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 49 IRLTVKAD-LDSALIDQL---GLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 49 ~~~~~~~~-~d~~~~~~l---g~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
.+|.+.|- .-.+.+++| |++++|+.-+. +.+++- + -.||+|+||+|||+|+ .....++. |+
T Consensus 180 ~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t-~~eeIl----~------~~pDGiflSNGPGDP~---~~~~~i~~-ik 244 (368)
T COG0505 180 KHVVVIDFGVKRNILRELVKRGCRVTVVPADT-SAEEIL----A------LNPDGIFLSNGPGDPA---PLDYAIET-IK 244 (368)
T ss_pred cEEEEEEcCccHHHHHHHHHCCCeEEEEcCCC-CHHHHH----h------hCCCEEEEeCCCCChh---HHHHHHHH-HH
Confidence 35555542 222778887 89999998774 233211 1 2579999999999998 77778888 88
Q ss_pred HhcCCC-Cccc-ccchHHHHhHhCceeeccCCCCcCcccc------CCceeEEeccchhccc--cCCCcEEEEe--ecCC
Q 007779 125 SAKGDL-KDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------EGERRAMNTFWPLLMR--ALPPDVIFIA--DPEG 192 (590)
Q Consensus 125 ~~~~~~-PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~~~~~~~~ryHsl~v~--~~p~~l~v~a--~~~g 192 (590)
++.+.+ |++| |||||+|+.|+||++.|| +|+|||.+. +|+.+.++++|+++|+ ++++..++|. .+||
T Consensus 245 ~l~~~~iPifGICLGHQllalA~Ga~T~Km-kFGHrG~NhPV~dl~tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDg 323 (368)
T COG0505 245 ELLGTKIPIFGICLGHQLLALALGAKTYKM-KFGHRGANHPVKDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDG 323 (368)
T ss_pred HHhccCCCeEEEcHHHHHHHHhcCCceeec-ccCCCCCCcCcccccCCeEEEEecCCceecChhhcCCCceeEEEeCCCC
Confidence 887765 9999 999999999999999999 999999997 5789999999999994 6776547888 6899
Q ss_pred cEEEEEcC----CCCcccCCC---chhhH--HHHHHHHh
Q 007779 193 SIMGGGGS----IGPHYSGND---PREMR--LVGALREV 222 (590)
Q Consensus 193 ~im~~~h~----~gvQfHPEs---~~~m~--L~~~L~kl 222 (590)
+++|++|+ |+||||||+ |+.-+ +.+|++.+
T Consensus 324 TvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~ 362 (368)
T COG0505 324 TVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELM 362 (368)
T ss_pred CccceecCCCceEEEccCCCCCCCCcccHHHHHHHHHHH
Confidence 99999999 999999998 33222 56666544
No 36
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=5.5e-26 Score=226.16 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=132.3
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
++|++.|+=|+ .+++++|..+.+++++...... ....++.+|+|||||||++|. +.....++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~--------~~~~~~~~dgliisGGp~~~~---~~~~~~~~- 68 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLAD--------EAAVAAQFDGVLLSPGPGTPE---RAGASIDM- 68 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHH--------HHHhhcCCCEEEECCCCCChh---hcchHHHH-
Confidence 36788888887 6778889999999998532111 111145689999999999998 56666777
Q ss_pred HHHhc-CCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccc--cCCCcEEE
Q 007779 123 LRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMR--ALPPDVIF 186 (590)
Q Consensus 123 i~~~~-~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~--~~p~~l~v 186 (590)
++.+. .++|+|| |+|||+|+.+|||+|.+. +.++||..+ + .+.+.+.++|++.|. ++|+++++
T Consensus 69 i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~-~~~~~g~~~~v~~~~~~~~~~~~~~~~v~~~H~~~v~~~~lp~~~~v 147 (214)
T PRK07765 69 VRACAAAGTPLLGVCLGHQAIGVAFGATVDRA-PELLHGKTSSVHHTGVGVLAGLPDPFTATRYHSLTILPETLPAELEV 147 (214)
T ss_pred HHHHHhCCCCEEEEccCHHHHHHHhCCEEeeC-CCCccCceeEEEECCCccccCCCCccEEEecchheEecccCCCceEE
Confidence 77654 4799999 999999999999999998 888898864 1 236889999999994 89999999
Q ss_pred Ee-ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhhcCC
Q 007779 187 IA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLAGG 226 (590)
Q Consensus 187 ~a-~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~~G~ 226 (590)
+| ++++.+||++|+ ||||||||+ +.|.+ +.+|+..+..-+
T Consensus 148 la~s~~~~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~~~~~~~~ 196 (214)
T PRK07765 148 TARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWLTVCGWAP 196 (214)
T ss_pred EEEcCCCcEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHHHHhcccc
Confidence 99 889999999997 999999996 45666 999996654333
No 37
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.93 E-value=6.7e-26 Score=240.48 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=124.6
Q ss_pred cceeEeeccccH-----HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 48 RIRLTVKADLDS-----ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 48 ~~~~~~~~~~d~-----~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
+.+|.++|. -. .+|.+.|+.+.|+++|. +.++.. -..+|+||||||||+|. +....+++
T Consensus 173 ~~~i~viD~-G~k~ni~~~L~~~G~~v~vvp~~~-~~~~i~----------~~~pDGIiLSgGPgdp~---~~~~~i~~- 236 (358)
T TIGR01368 173 KKRVVVIDF-GVKQNILRRLVKRGCEVTVVPYDT-DAEEIK----------KYNPDGIFLSNGPGDPA---AVEPAIET- 236 (358)
T ss_pred ccEEEEEeC-CcHHHHHHHHHHCCCEEEEEcCCC-CHHHHH----------hhCCCEEEECCCCCCHH---HHHHHHHH-
Confidence 357887774 33 45677799999999984 333211 01359999999999998 55666777
Q ss_pred HHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------CCceeEEeccchhccc--cCC-CcEEEEe-e-c
Q 007779 123 LRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------EGERRAMNTFWPLLMR--ALP-PDVIFIA-D-P 190 (590)
Q Consensus 123 i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~~~~~~~~ryHsl~v~--~~p-~~l~v~a-~-~ 190 (590)
++.+..++|+|| |||||.|+.+|||++.++ ++++||.++ +++.+.+++||++.|+ ++| ++|++++ + +
T Consensus 237 i~~~~~~~PILGIClG~QlLa~a~Gg~v~kl-~~gh~G~nhpV~~~~~~~v~itsqnH~~aV~~~~l~~~~l~vta~~~n 315 (358)
T TIGR01368 237 IRKLLEKIPIFGICLGHQLLALAFGAKTYKM-KFGHRGGNHPVKDLITGRVEITSQNHGYAVDPDSLPAGDLEVTHVNLN 315 (358)
T ss_pred HHHHHcCCCEEEECHHHHHHHHHhCCceecc-CcCcCCCceeeEECCCCcEEEeecCCCcEEcccccCCCceEEEEEECC
Confidence 777666899999 999999999999999999 899999876 3557888899999994 678 6799999 4 7
Q ss_pred CCcEEEEEcC----CCCcccCCCchh----hH-HHHHHHHh
Q 007779 191 EGSIMGGGGS----IGPHYSGNDPRE----MR-LVGALREV 222 (590)
Q Consensus 191 ~g~im~~~h~----~gvQfHPEs~~~----m~-L~~~L~kl 222 (590)
||+|||++|+ ||||||||+..+ .. +.+|++.+
T Consensus 316 Dg~Vegi~h~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~ 356 (358)
T TIGR01368 316 DGTVEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFIDLI 356 (358)
T ss_pred CCcEEEEEECCCCEEEEEECCCCCCCCCChHHHHHHHHHHh
Confidence 8999999998 999999999322 22 66666543
No 38
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.93 E-value=6.1e-26 Score=260.86 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=128.8
Q ss_pred ccceeEeeccccH------HHHHHh-C--CceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhh
Q 007779 47 RRIRLTVKADLDS------ALIDQL-G--LKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFK 117 (590)
Q Consensus 47 ~~~~~~~~~~~d~------~~~~~l-g--~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~ 117 (590)
++++|++.||.|| +||+++ | .++.|++||....+.. + .++.+|+||||||||+|.++++.+.
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~------~---~l~~~D~VVIspGPG~p~~~~~~~i 74 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLL------E---LLPLFDAIVVGPGPGNPNNAQDMGI 74 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhh------h---hhcCCCEEEECCCCCCccchhhhHH
Confidence 3779999999999 788887 3 6789999997542210 1 1446799999999999987777887
Q ss_pred HHHHHHHHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----CCc-------eeEEeccchhccc-cCCCc
Q 007779 118 VLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EGE-------RRAMNTFWPLLMR-ALPPD 183 (590)
Q Consensus 118 ~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~~~-------~~~~~ryHsl~v~-~~p~~ 183 (590)
+.++ ++.. ..++|+|| |||||+|+.++||+|.++ +.++||.++ .+. .+.+++|||+.|+ ..|++
T Consensus 75 ~~~i-~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~-~~~~hG~~~~v~~~~~~lf~gl~~~~v~~~Hs~~v~~~~~~~ 152 (742)
T TIGR01823 75 ISEL-WELANLDEVPVLGICLGFQSLCLAQGADISRL-PTPKHGQVYEMHTNDAAIFCGLFSVKSTRYHSLYANPEGIDT 152 (742)
T ss_pred HHHH-HHhcccCCCcEEEEchhhHHHHhhcCCEEEEC-CCCCcCeEEEEEECCccccCCCCCCceeEEEEEEccCCCCCc
Confidence 7776 6543 23699999 999999999999999999 899999865 111 3789999999995 35555
Q ss_pred --EEEEe-ec-CCcEEEEEcC----CCCcccCCC---chh-hH-HHHHHHHhh
Q 007779 184 --VIFIA-DP-EGSIMGGGGS----IGPHYSGND---PRE-MR-LVGALREVL 223 (590)
Q Consensus 184 --l~v~a-~~-~g~im~~~h~----~gvQfHPEs---~~~-m~-L~~~L~kl~ 223 (590)
+.+++ ++ ++.|||++|+ ||||||||+ +.+ .. +++|++...
T Consensus 153 l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl~~~~ 205 (742)
T TIGR01823 153 LLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFLKLAF 205 (742)
T ss_pred ceEEEEEEcCCCCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHHHHHH
Confidence 45555 43 3579999998 999999999 343 44 888887654
No 39
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.92 E-value=2.4e-25 Score=254.21 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=132.5
Q ss_pred cccceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHH
Q 007779 46 GRRIRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVL 119 (590)
Q Consensus 46 ~~~~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~ 119 (590)
|...+|++.|+-|+ ++|+++|.++.+++++.. .. .+. ...+|+||||||||+|. |.+. .
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~-~~-----~~~-----~~~~DgLILsgGPGsp~---d~~~-~ 578 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHA-EA-----AFD-----ERRPDLVVLSPGPGRPA---DFDV-A 578 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCC-hh-----hhh-----hcCCCEEEEcCCCCCch---hccc-H
Confidence 44568999999998 789999999999998842 11 111 23579999999999998 4443 4
Q ss_pred HHHHHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------C-------CceeEEeccchhcc--ccCCCc
Q 007779 120 DTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------E-------GERRAMNTFWPLLM--RALPPD 183 (590)
Q Consensus 120 ~~~i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~-------~~~~~~~ryHsl~v--~~~p~~ 183 (590)
++|-+.+..++|+|| |||||.|+++|||+|.++ +.|+||+++ + +..+.+.+|||+.+ .++|++
T Consensus 579 ~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~-~~p~~G~~~~V~~~~~~~Lf~~lp~~~~v~~~HS~~~~~~~LP~~ 657 (717)
T TIGR01815 579 GTIDAALARGLPVFGVCLGLQGMVEAFGGALDVL-PEPVHGKASRIRVLGPDALFAGLPERLTVGRYHSLFARRDRLPAE 657 (717)
T ss_pred HHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEEC-CCCeeCcceEEEECCCChhhhcCCCCCEEEEECCCCcccccCCCC
Confidence 452334556899999 999999999999999999 899999764 1 23689999999987 579999
Q ss_pred EEEEe-ecCCcEEEEEcC----CCCcccCCC------chhhH-HHHHHHHhhcC
Q 007779 184 VIFIA-DPEGSIMGGGGS----IGPHYSGND------PREMR-LVGALREVLAG 225 (590)
Q Consensus 184 l~v~a-~~~g~im~~~h~----~gvQfHPEs------~~~m~-L~~~L~kl~~G 225 (590)
++++| +++|.+||++|+ ||||||||| ..|+. |+||+..+..+
T Consensus 658 ~~vlA~s~d~~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 658 LTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLAAG 711 (717)
T ss_pred eEEEEEeCCCcEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHhhc
Confidence 99999 889999999986 999999998 23566 99999888644
No 40
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.92 E-value=2.4e-25 Score=236.56 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=124.9
Q ss_pred cceeEeecccc-H---HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 48 RIRLTVKADLD-S---ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 48 ~~~~~~~~~~d-~---~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
..+|.++|.=- . .+|.+.|+.+.|+++|. +.++.. . + .+|+||||||||+|. +....+++ +
T Consensus 177 ~~~I~viD~G~k~nivr~L~~~G~~v~vvp~~~-~~~~i~----~-----~-~~DGIvLSgGPgdp~---~~~~~~~~-i 241 (360)
T PRK12564 177 KYKVVAIDFGVKRNILRELAERGCRVTVVPATT-TAEEIL----A-----L-NPDGVFLSNGPGDPA---ALDYAIEM-I 241 (360)
T ss_pred CCEEEEEeCCcHHHHHHHHHHCCCEEEEEeCCC-CHHHHH----h-----c-CCCEEEEeCCCCChH---HHHHHHHH-H
Confidence 35788888522 1 45667799999999985 333311 0 1 469999999999998 55666777 7
Q ss_pred HHhc-CCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------CCceeEEeccchhccc--cCCCcEEEEe-e-cC
Q 007779 124 RSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------EGERRAMNTFWPLLMR--ALPPDVIFIA-D-PE 191 (590)
Q Consensus 124 ~~~~-~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~~~~~~~~ryHsl~v~--~~p~~l~v~a-~-~~ 191 (590)
+.+. .++|+|| |||||.|+.++||++.++ ++++||.++ +++.+.+++||++.|+ ++|+++++++ + +|
T Consensus 242 ~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl-~~gh~G~~~pv~~~~~~~~~its~~H~~~V~~~~lp~~l~v~a~~~~D 320 (360)
T PRK12564 242 RELLEKKIPIFGICLGHQLLALALGAKTYKM-KFGHRGANHPVKDLETGKVEITSQNHGFAVDEDSLPANLEVTHVNLND 320 (360)
T ss_pred HHHHHcCCeEEEECHHHHHHHHHhCCcEecc-CCCccCCceeeEECCCCcEEEEecCcccEEcccccCCceEEEEEeCCC
Confidence 7765 4799999 999999999999999999 899999876 3567889999999995 8999999999 5 68
Q ss_pred CcEEEEEcC----CCCcccCCCch----hhH-HHHHHH
Q 007779 192 GSIMGGGGS----IGPHYSGNDPR----EMR-LVGALR 220 (590)
Q Consensus 192 g~im~~~h~----~gvQfHPEs~~----~m~-L~~~L~ 220 (590)
|.|||++|+ ||||||||+.. +.. +.+|++
T Consensus 321 g~iegi~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~ 358 (360)
T PRK12564 321 GTVEGLRHKDLPAFSVQYHPEASPGPHDSAYLFDEFVE 358 (360)
T ss_pred CcEEEEEECCCCEEEEEeCCcCCCCCCCHHHHHHHHHH
Confidence 999999997 99999999832 222 666664
No 41
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.92 E-value=5.3e-25 Score=234.93 Aligned_cols=159 Identities=9% Similarity=0.053 Sum_probs=124.2
Q ss_pred cceeEeeccccH----HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 48 RIRLTVKADLDS----ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 48 ~~~~~~~~~~d~----~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
+.+|+++|+=-. .+|+++|+++.|++++. +.++.. . + .+|+||||||||+|. +....++. +
T Consensus 192 ~~~I~viD~g~k~ni~~~L~~~G~~v~vvp~~~-~~~~i~----~-----~-~~dgIilSgGPg~p~---~~~~~i~~-i 256 (382)
T CHL00197 192 QLKIIVIDFGVKYNILRRLKSFGCSITVVPATS-PYQDIL----S-----Y-QPDGILLSNGPGDPS---AIHYGIKT-V 256 (382)
T ss_pred CCEEEEEECCcHHHHHHHHHHCCCeEEEEcCCC-CHHHHh----c-----c-CCCEEEEcCCCCChh---HHHHHHHH-H
Confidence 468999998443 66777899999999984 333211 1 1 579999999999998 66666777 6
Q ss_pred HHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----CCceeEEeccchhcc--ccCCC-cEEEEe--ecCC
Q 007779 124 RSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EGERRAMNTFWPLLM--RALPP-DVIFIA--DPEG 192 (590)
Q Consensus 124 ~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~~~~~~~~ryHsl~v--~~~p~-~l~v~a--~~~g 192 (590)
+.+ ..++|+|| |||||+|+.++||+|.++ +++++|.+. .++...+.+||++.| +++|. .+++++ .+||
T Consensus 257 ~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~-~~Gh~g~n~pv~~~~~v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDg 335 (382)
T CHL00197 257 KKLLKYNIPIFGICMGHQILSLALEAKTFKL-KFGHRGLNHPSGLNQQVEITSQNHGFAVNLESLAKNKFYITHFNLNDG 335 (382)
T ss_pred HHHHhCCCCEEEEcHHHHHHHHHhCCEEecc-CCCCCCCCEecCCCCceEEeecchheEeeccccCCCCcEEEEEECCCC
Confidence 665 35899999 999999999999999999 899888765 234455569999999 47875 699998 4799
Q ss_pred cEEEEEcC----CCCcccCCC---chhh--HHHHHHHHh
Q 007779 193 SIMGGGGS----IGPHYSGND---PREM--RLVGALREV 222 (590)
Q Consensus 193 ~im~~~h~----~gvQfHPEs---~~~m--~L~~~L~kl 222 (590)
+|||++|+ ||||||||+ +++. -+.+|++.+
T Consensus 336 tvegi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~ 374 (382)
T CHL00197 336 TVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEII 374 (382)
T ss_pred CEEEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999 999999998 3332 266776654
No 42
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.92 E-value=4.7e-25 Score=233.74 Aligned_cols=159 Identities=11% Similarity=0.024 Sum_probs=123.6
Q ss_pred ceeEeecc-ccH---HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 49 IRLTVKAD-LDS---ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 49 ~~~~~~~~-~d~---~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
.+|.+.|. +-. .+|.+.|..+.++++|. +.++.. -..+|+||||||||+|. +....++. ++
T Consensus 168 ~~V~viD~G~k~ni~~~L~~~G~~v~vvp~~~-~~~~i~----------~~~~DGIiLsgGPgdp~---~~~~~~~~-i~ 232 (354)
T PRK12838 168 KHVALIDFGYKKSILRSLSKRGCKVTVLPYDT-SLEEIK----------NLNPDGIVLSNGPGDPK---ELQPYLPE-IK 232 (354)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCeEEEEECCC-CHHHHh----------hcCCCEEEEcCCCCChH---HhHHHHHH-HH
Confidence 46777774 112 45667799999999984 232211 01569999999999998 66666777 77
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------CCceeEEeccchhccc--cCCC-cEEEEe-e-cCC
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------EGERRAMNTFWPLLMR--ALPP-DVIFIA-D-PEG 192 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~~~~~~~~ryHsl~v~--~~p~-~l~v~a-~-~~g 192 (590)
.+..++|+|| |||||+|+.+|||+|.++ ++++||.++ +++.+.+.+||++.|+ ++|+ .+++++ . +||
T Consensus 233 ~~~~~~PvlGIClG~QlLa~a~Gg~v~kl-~~gh~G~~hpV~~~~~~~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg 311 (354)
T PRK12838 233 KLISSYPILGICLGHQLIALALGADTEKL-PFGHRGANHPVIDLTTGRVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDG 311 (354)
T ss_pred HHhcCCCEEEECHHHHHHHHHhCCEEecC-CCCccCCceEEEECCCCeEEEeccchheEecccccCCCCcEEEEEECCCC
Confidence 7655699999 999999999999999999 899999987 2457788899999994 5775 499999 4 799
Q ss_pred cEEEEEcC----CCCcccCCC---ch-hhH-HHHHHHHhh
Q 007779 193 SIMGGGGS----IGPHYSGND---PR-EMR-LVGALREVL 223 (590)
Q Consensus 193 ~im~~~h~----~gvQfHPEs---~~-~m~-L~~~L~kl~ 223 (590)
.|||++|+ ||||||||+ +. +.. +.+|++.+.
T Consensus 312 ~Veai~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 351 (354)
T PRK12838 312 SIEGLRHKKKPVLSVQFHPEAHPGPHDAEYIFDEFLEMME 351 (354)
T ss_pred eEEEEEECCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999998 999999998 22 333 777776653
No 43
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.92 E-value=6.4e-25 Score=212.91 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=123.3
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|+++|+.|+ .+++++|+++.++++++..... +. ++.+|+||++||||+|. +......+ ++
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~-----~~-----~~~~dgvil~gG~~~~~---~~~~~~~i-~~ 66 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEE-----LE-----LLNPDAIVISPGPGHPE---DAGISLEI-IR 66 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHH-----Hh-----hcCCCEEEECCCCCCcc---cchhHHHH-HH
Confidence 578888888 7788899999999998643211 01 34679999999999998 33333344 66
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------C------CceeEEeccchhccccCCCc--EEEEe-
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------E------GERRAMNTFWPLLMRALPPD--VIFIA- 188 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~------~~~~~~~ryHsl~v~~~p~~--l~v~a- 188 (590)
.+..++|+|| |+|||.|+.++||+|.+. +.+.||.+. + +..+.+..+|++.|+.+|.. ++++|
T Consensus 67 ~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~-~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~~~~~~la~ 145 (184)
T cd01743 67 ALAGKVPILGVCLGHQAIAEAFGGKVVRA-PEPMHGKTSEIHHDGSGLFKGLPQPFTVGRYHSLVVDPDPLPDLLEVTAS 145 (184)
T ss_pred HHhcCCCEEEECHhHHHHHHHhCCEEEeC-CCCCcCceeEEEECCCccccCCCCCcEEEeCcEEEEecCCCCceEEEEEe
Confidence 6667899999 999999999999999999 788888654 1 13678999999999888876 99999
Q ss_pred ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHH
Q 007779 189 DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGA 218 (590)
Q Consensus 189 ~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~ 218 (590)
++++.|||++|+ ||+|||||+ +.|++ |++|
T Consensus 146 ~~~~~v~a~~~~~~~i~gvQfHPE~~~~~~g~~l~~~f 183 (184)
T cd01743 146 TEDGVIMALRHRDLPIYGVQFHPESILTEYGLRLLENF 183 (184)
T ss_pred CCCCeEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHhh
Confidence 888999999987 999999998 66776 6665
No 44
>PRK13566 anthranilate synthase; Provisional
Probab=99.92 E-value=7e-25 Score=250.74 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=133.8
Q ss_pred cccccceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhh
Q 007779 44 LIGRRIRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFK 117 (590)
Q Consensus 44 ~~~~~~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~ 117 (590)
..|+..+|++.|+-|+ +||++.|++|+++|++.- .+. +. ...+|+||||||||+|. |.+
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~-----~~-----~~~~DgVVLsgGpgsp~---d~~- 586 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEM-----LD-----RVNPDLVVLSPGPGRPS---DFD- 586 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhH-----hh-----hcCCCEEEECCCCCChh---hCC-
Confidence 5666779999999998 889999999999999852 111 11 23579999999999998 544
Q ss_pred HHHHHHHH-hcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------C-------CceeEEeccchhccc--cC
Q 007779 118 VLDTILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------E-------GERRAMNTFWPLLMR--AL 180 (590)
Q Consensus 118 ~~~~~i~~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~-------~~~~~~~ryHsl~v~--~~ 180 (590)
+.++ ++. +..++|||| |||||.|+++|||+|.+. +.++||+++ + ...+.+.+|||+.+. ++
T Consensus 587 ~~~l-I~~a~~~~iPILGIClG~QlLa~alGG~V~~~-~~~~~G~~~~V~v~~~~~Lf~~lp~~~~v~~~Hs~~v~~~~L 664 (720)
T PRK13566 587 CKAT-IDAALARNLPIFGVCLGLQAIVEAFGGELGQL-AYPMHGKPSRIRVRGPGRLFSGLPEEFTVGRYHSLFADPETL 664 (720)
T ss_pred cHHH-HHHHHHCCCcEEEEehhHHHHHHHcCCEEEEC-CCCccCCceEEEECCCCchhhcCCCCCEEEEecceeEeeccC
Confidence 4566 555 455799999 999999999999999999 899999875 1 125789999999884 69
Q ss_pred CCcEEEEe-ecCCcEEEEEcC----CCCcccCCC------chhhH-HHHHHHHh
Q 007779 181 PPDVIFIA-DPEGSIMGGGGS----IGPHYSGND------PREMR-LVGALREV 222 (590)
Q Consensus 181 p~~l~v~a-~~~g~im~~~h~----~gvQfHPEs------~~~m~-L~~~L~kl 222 (590)
|++++++| ++||.|||++|+ ||||||||+ +.|++ |+||++.+
T Consensus 665 p~~~~vlA~s~dg~V~ai~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl~~~ 718 (720)
T PRK13566 665 PDELLVTAETEDGVIMAIEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVVRLL 718 (720)
T ss_pred CCceEEEEEeCCCcEEEEEECCCCEEEEeccCeeCCcCCchhHHHHHHHHHHHh
Confidence 99999999 889999999997 999999999 34776 99998765
No 45
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.91 E-value=2.7e-24 Score=207.94 Aligned_cols=135 Identities=10% Similarity=0.056 Sum_probs=111.9
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHHhcC-CCCccc-ccc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKG-DLKDEE-EVS 137 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~~~-~~PilG-CLG 137 (590)
.+++++|..+.++++|. +.++.. .+.+|+|||+||||+|. +.+...++ ++.+.. ++|+|| |+|
T Consensus 14 ~~l~~~G~~~~~~~~~~-~~~~~~----------~~~~dgiil~GG~~~~~---~~~~~~~~-~~~~~~~~~PvlGIC~G 78 (178)
T cd01744 14 RELLKRGCEVTVVPYNT-DAEEIL----------KLDPDGIFLSNGPGDPA---LLDEAIKT-VRKLLGKKIPIFGICLG 78 (178)
T ss_pred HHHHHCCCeEEEEECCC-CHHHHh----------hcCCCEEEECCCCCChh---HhHHHHHH-HHHHHhCCCCEEEECHH
Confidence 67888999999999985 332211 23579999999999998 55667777 776544 599999 999
Q ss_pred hHHHHhHhCceeeccCCCCcCcccc------CCceeEEeccchhccc--cCCCcEEEEe-e-cCCcEEEEEcC----CCC
Q 007779 138 KAQLGAFFSAMTIRANAFPEATQWS------EGERRAMNTFWPLLMR--ALPPDVIFIA-D-PEGSIMGGGGS----IGP 203 (590)
Q Consensus 138 hQ~i~~~~G~~v~~~~~~~~hG~~s------~~~~~~~~ryHsl~v~--~~p~~l~v~a-~-~~g~im~~~h~----~gv 203 (590)
||.|+.+|||+|.+. +.++||+++ .++.+.+.+||++.|+ ++|++++++| + +|+.|||++|+ |||
T Consensus 79 ~Q~l~~~~Gg~v~~~-~~~~~g~~~~v~~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~~i~Gv 157 (178)
T cd01744 79 HQLLALALGAKTYKM-KFGHRGSNHPVKDLITGRVYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSV 157 (178)
T ss_pred HHHHHHHcCCceecC-CCCCCCCceeeEEcCCCCcEEEEcCceEEEcccccCCceEEEEEECCCCcEEEEEECCCCeEEE
Confidence 999999999999998 788999875 2346778899999994 7999999999 5 57899999996 999
Q ss_pred cccCCCc
Q 007779 204 HYSGNDP 210 (590)
Q Consensus 204 QfHPEs~ 210 (590)
|||||+.
T Consensus 158 QfHPE~~ 164 (178)
T cd01744 158 QFHPEAS 164 (178)
T ss_pred eeCCCCC
Confidence 9999983
No 46
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.90 E-value=3.9e-24 Score=207.91 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=125.7
Q ss_pred EeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHH
Q 007779 52 TVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRS 125 (590)
Q Consensus 52 ~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~ 125 (590)
++.|+=|| +.++++|.+++|++++.- ..... + .++.+|+|||||||++|. +.....++ ++.
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~-~~~~~-----~---~~~~~d~iii~Gg~~~~~---d~~~~~~~-i~~ 67 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSD-FEEPL-----E---DLDDYDGIIISGGPGSPY---DIEGLIEL-IRE 67 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGG-HHHHH-----H---HTTTSSEEEEECESSSTT---SHHHHHHH-HHH
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCc-hhhhh-----h---hhcCCCEEEECCcCCccc---cccccccc-ccc
Confidence 35566666 778889999999999852 11110 0 145789999999999999 67777887 777
Q ss_pred hcC-CCCccc-ccchHHHHhHhCceeeccCC-CCcCcccc----C-------C--ceeEEeccchhcccc---CCCcEEE
Q 007779 126 AKG-DLKDEE-EVSKAQLGAFFSAMTIRANA-FPEATQWS----E-------G--ERRAMNTFWPLLMRA---LPPDVIF 186 (590)
Q Consensus 126 ~~~-~~PilG-CLGhQ~i~~~~G~~v~~~~~-~~~hG~~s----~-------~--~~~~~~ryHsl~v~~---~p~~l~v 186 (590)
+.. ++|+|| |+|||.|+.++|++|.+. + .++||.+. + + +.+.+.+||++.|.. +|+++++
T Consensus 68 ~~~~~~PilGIC~G~Q~la~~~G~~v~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~ 146 (192)
T PF00117_consen 68 ARERKIPILGICLGHQILAHALGGKVVPS-PEKPHHGGNIPISETPEDPLFYGLPESFKAYQYHSDAVNPDDLLPEGFEV 146 (192)
T ss_dssp HHHTTSEEEEETHHHHHHHHHTTHEEEEE-ESEEEEEEEEEEEEEEEHGGGTTSTSEEEEEEEECEEEEEGHHHHTTEEE
T ss_pred ccccceEEEEEeehhhhhHHhcCCccccc-ccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence 655 899999 999999999999999998 5 78888664 1 2 489999999999987 9999999
Q ss_pred Ee-ecCC-cEEEEEcC----CCCcccCCC---chhhH-HHHHHHH
Q 007779 187 IA-DPEG-SIMGGGGS----IGPHYSGND---PREMR-LVGALRE 221 (590)
Q Consensus 187 ~a-~~~g-~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~k 221 (590)
+| ++++ .+||++|+ ||+|||||. +.++. |++++.|
T Consensus 147 la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~nf~~~ 191 (192)
T PF00117_consen 147 LASSSDGCPIQAIRHKDNPIYGVQFHPEFSSSPGGPQLLKNFFLK 191 (192)
T ss_dssp EEEETTTTEEEEEEECTTSEEEESSBTTSTTSTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccEEEEEecCCcCCCCCCcchhhhheeEe
Confidence 99 7666 89999998 999999998 44455 8888765
No 47
>PRK00758 GMP synthase subunit A; Validated
Probab=99.90 E-value=2.1e-23 Score=202.50 Aligned_cols=150 Identities=11% Similarity=0.024 Sum_probs=119.8
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCC-CeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQ-AKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~-~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
|++.|+.|+ ++++++|.++.+++++. +.++ ++.. |+|||++|| .+. ......+. +
T Consensus 2 i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~-~~~~------------l~~~~dgivi~Gg~-~~~---~~~~~~~~-l 63 (184)
T PRK00758 2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTT-PVEE------------IKAFEDGLILSGGP-DIE---RAGNCPEY-L 63 (184)
T ss_pred EEEEECCCchHHHHHHHHHHcCCcEEEEECCC-CHHH------------HhhcCCEEEECCCC-Chh---hccccHHH-H
Confidence 678888877 56778899999999874 2222 3345 899999999 333 45555666 5
Q ss_pred HHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccccCCCcEEEEe-e
Q 007779 124 RSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIA-D 189 (590)
Q Consensus 124 ~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a-~ 189 (590)
+. .++|+|| |+|||.|+.++||+|.+. +.++||... + .+++.+.++|++.|.++|+.++++| +
T Consensus 64 ~~--~~~PilGIC~G~Q~L~~a~Gg~v~~~-~~~~~g~~~i~~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~~~~la~~ 140 (184)
T PRK00758 64 KE--LDVPILGICLGHQLIAKAFGGEVGRG-EYGEYALVEVEILDEDDILKGLPPEIRVWASHADEVKELPDGFEILARS 140 (184)
T ss_pred Hh--CCCCEEEEeHHHHHHHHhcCcEEecC-CCceeeeEEEEEcCCChhhhCCCCCcEEEeehhhhhhhCCCCCEEEEEC
Confidence 53 3799999 999999999999999998 788888753 1 2368899999999999999999999 8
Q ss_pred cCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHH
Q 007779 190 PEGSIMGGGGS----IGPHYSGND---PREMR-LVGALRE 221 (590)
Q Consensus 190 ~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~k 221 (590)
+++.|+|++|+ ||+|||||+ +.|.. +++|++.
T Consensus 141 ~~~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~l~~~f~~~ 180 (184)
T PRK00758 141 DICEVEAMKHKEKPIYGVQFHPEVAHTEYGEEIFKNFLEI 180 (184)
T ss_pred CCCCEEEEEECCCCEEEEEcCCccCCCchHHHHHHHHHHH
Confidence 88999999985 999999997 35665 8888754
No 48
>PLN02347 GMP synthetase
Probab=99.88 E-value=1.4e-22 Score=225.30 Aligned_cols=167 Identities=13% Similarity=0.017 Sum_probs=129.3
Q ss_pred eeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 50 RLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 50 ~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
+|+++|+-|+ .+++++|..+.++++|. +.++.. . . .+|+||||+||++|.+.+ .+...+.++
T Consensus 12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~-~~~~i~----~-----~-~~dgIILsGGP~sv~~~~-~p~~~~~i~ 79 (536)
T PLN02347 12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTA-SLDRIA----S-----L-NPRVVILSGGPHSVHVEG-APTVPEGFF 79 (536)
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCC-CHHHHh----c-----C-CCCEEEECCCCCcccccC-CchhhHHHH
Confidence 5899998887 56899999999999983 444321 1 1 468999999999987322 222222224
Q ss_pred HHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C------C--c--eeEEeccchhccccCCCcEEEE
Q 007779 124 RSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E------G--E--RRAMNTFWPLLMRALPPDVIFI 187 (590)
Q Consensus 124 ~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~------~--~--~~~~~ryHsl~v~~~p~~l~v~ 187 (590)
+.+ ..++|+|| |+|||.|+.+|||+|.+. +.++||... . + . .+.++.+||+.|.++|++++++
T Consensus 80 ~~~~~~~iPILGIClG~QlLa~alGG~V~~~-~~~e~G~~~v~i~~~~~Lf~~l~~~~~~~v~~~Hsd~V~~lP~g~~vl 158 (536)
T PLN02347 80 DYCRERGVPVLGICYGMQLIVQKLGGEVKPG-EKQEYGRMEIRVVCGSQLFGDLPSGETQTVWMSHGDEAVKLPEGFEVV 158 (536)
T ss_pred HHHHhcCCcEEEECHHHHHHHHHcCCEEEec-CCcccceEEEEEcCCChhhhcCCCCceEEEEEEEEEEeeeCCCCCEEE
Confidence 443 24799999 999999999999999998 778888775 1 1 1 2788999999999999999999
Q ss_pred e-ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhhcC-CCCC
Q 007779 188 A-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLAG-GHLG 229 (590)
Q Consensus 188 a-~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~~G-~~Lt 229 (590)
| ++++.|||++|+ ||||||||+ +.|+. |+||+.++..= .+.+
T Consensus 159 A~s~~~~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~ 210 (536)
T PLN02347 159 AKSVQGAVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWK 210 (536)
T ss_pred EEeCCCcEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcC
Confidence 9 889999999986 999999998 56777 99999776543 3444
No 49
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.88 E-value=1.7e-22 Score=194.87 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=116.8
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|++.|+=|+ .+|+++|.++.+++++.- .++ + .++.+|+|||++||+++.+.+ .....+.+++
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~-~~~-------~---~~~~~dgvIl~Gg~~~~~~~~-~~~~~~~~~~ 68 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTP-LEE-------I---KLKNPKGIILSGGPSSVYEED-APRVDPEIFE 68 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCC-hhh-------h---cccCCCEEEECCCcccccccc-cchhhHHHHh
Confidence 356676666 668888999999999841 110 0 155679999999999987432 2222233122
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccccCCCcEEEEe-ec
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIA-DP 190 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a-~~ 190 (590)
.++|+|| |+|||+|+.++||+|.+. +.+++|... . ...+.+..+|++.|..+|++++++| ++
T Consensus 69 ---~~~PilGIC~G~Qll~~~~gg~v~~~-~~~~~G~~~v~~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~~~~la~~~ 144 (181)
T cd01742 69 ---LGVPVLGICYGMQLIAKALGGKVERG-DKREYGKAEIEIDDSSPLFEGLPDEQTVWMSHGDEVVKLPEGFKVIASSD 144 (181)
T ss_pred ---cCCCEEEEcHHHHHHHHhcCCeEEeC-CCCcceEEEEEecCCChhhcCCCCceEEEcchhhhhhhcCCCcEEEEeCC
Confidence 3799999 999999999999999998 788888554 1 1257888999999999999999999 77
Q ss_pred CCcEEEEEcC----CCCcccCCC---chhhH-HHHH
Q 007779 191 EGSIMGGGGS----IGPHYSGND---PREMR-LVGA 218 (590)
Q Consensus 191 ~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~ 218 (590)
++.|+|++|+ ||+|||||. +.|++ |++|
T Consensus 145 ~~~i~a~~~~~~~~~g~QfHPE~~~~~~g~~ll~~f 180 (181)
T cd01742 145 NCPVAAIANEEKKIYGVQFHPEVTHTEKGKEILKNF 180 (181)
T ss_pred CCCEEEEEeCCCcEEEEEcCCccccCcChHHHHHhh
Confidence 8999999986 999999998 36676 6655
No 50
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.87 E-value=6.8e-22 Score=192.48 Aligned_cols=155 Identities=10% Similarity=-0.012 Sum_probs=120.8
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|+++|+=|+ +.++++|+++.+++++. +.++.. . .+ +|+|||++||+++.+.. ..+. ++
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~~~----~-----~~-~~glii~Gg~~~~~~~~----~~~~-i~ 64 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTT-PLEEIR----E-----KN-PKGIILSGGPSSVYAEN----APRA-DE 64 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCC-CHHHHh----h-----cC-CCEEEECCCCCCcCcCC----chHH-HH
Confidence 356677676 55888999999999985 222211 1 22 46999999999987432 2344 44
Q ss_pred H-hcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc-----C-------CceeEEeccchhccccCCCcEEEEe-e
Q 007779 125 S-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS-----E-------GERRAMNTFWPLLMRALPPDVIFIA-D 189 (590)
Q Consensus 125 ~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s-----~-------~~~~~~~ryHsl~v~~~p~~l~v~a-~ 189 (590)
. +..++|+|| |+|||+|+.++||+|.+. +.+++|... . ++.+.+..+|++.|.++|+.++++| +
T Consensus 65 ~~~~~~~PilGIC~G~Qll~~~lgg~v~~~-~~~~~g~~~v~~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~~~vla~~ 143 (188)
T TIGR00888 65 KIFELGVPVLGICYGMQLMAKQLGGEVGRA-EKREYGKAELEILDEDDLFRGLPDESTVWMSHGDKVKELPEGFKVLATS 143 (188)
T ss_pred HHHhCCCCEEEECHHHHHHHHhcCceEecC-CCccceeEEEEEecCCHhhcCCCCCcEEEeEccceeecCCCCCEEEEEC
Confidence 4 445799999 999999999999999998 788888643 1 2368888999999999999999999 7
Q ss_pred cCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHh
Q 007779 190 PEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREV 222 (590)
Q Consensus 190 ~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl 222 (590)
+++.++|++++ ||+|||||. +.|++ |++|+..+
T Consensus 144 ~~~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~i~~~f~~~~ 184 (188)
T TIGR00888 144 DNCPVAAMAHEEKPIYGVQFHPEVTHTEYGNELLENFVYDV 184 (188)
T ss_pred CCCCeEEEEECCCCEEEEeeCCccCCChhhHHHHHHHHHHh
Confidence 78899999987 999999998 35777 88888743
No 51
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.84 E-value=1.4e-20 Score=190.50 Aligned_cols=159 Identities=12% Similarity=0.015 Sum_probs=117.1
Q ss_pred cceeEeeccccH-------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh-hhHH
Q 007779 48 RIRLTVKADLDS-------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA-FKVL 119 (590)
Q Consensus 48 ~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~-g~~~ 119 (590)
+++|+++.+.++ .++++.|.++++++++.=.. .+. .++.+|+|||++||+++.+..+. ....
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~------~p~----~l~~~dgvii~Ggp~~~~d~~~wi~~~~ 76 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDP------LPD----TLEDHAGAVIFGGPMSANDPDDFIRREI 76 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCC------CCC----cccccCEEEEECCCCCCCCCchHHHHHH
Confidence 568999988886 77888899999998752100 111 15678999999999998754332 2245
Q ss_pred HHHHHH-hcCCCCccc-ccchHHHHhHhCceeeccCCCCc-Ccccc------CC-----ceeEEeccchhccccCCCcEE
Q 007779 120 DTILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPE-ATQWS------EG-----ERRAMNTFWPLLMRALPPDVI 185 (590)
Q Consensus 120 ~~~i~~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~-hG~~s------~~-----~~~~~~ryHsl~v~~~p~~l~ 185 (590)
++ |+. +..++|+|| |+|||+|+.++||+|.+. +.+. +-++. ++ .+..+..+|+.. ..+|++++
T Consensus 77 ~~-i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~-~~G~~e~G~~~i~~~~~~~~~~~~~~~~~~~H~d~-~~lP~~~~ 153 (239)
T PRK06490 77 DW-ISVPLKENKPFLGICLGAQMLARHLGARVAPH-PDGRVEIGYYPLRPTEAGRALMHWPEMVYHWHREG-FDLPAGAE 153 (239)
T ss_pred HH-HHHHHHCCCCEEEECHhHHHHHHHcCCEeecC-CCCCCccceEEeEECCCcccccCCCCEEEEECCcc-ccCCCCCE
Confidence 66 554 456799999 999999999999999998 5432 22222 12 134566679988 68999999
Q ss_pred EEe-ecCCcEEEEEcC---CCCcccCCCchhhHHHHHHH
Q 007779 186 FIA-DPEGSIMGGGGS---IGPHYSGNDPREMRLVGALR 220 (590)
Q Consensus 186 v~a-~~~g~im~~~h~---~gvQfHPEs~~~m~L~~~L~ 220 (590)
++| ++++.+||+++. ||+|||||....+ +.+++.
T Consensus 154 ~LA~s~~~~~qa~~~~~~v~g~QfHPE~~~~~-~~~~i~ 191 (239)
T PRK06490 154 LLATGDDFPNQAFRYGDNAWGLQFHPEVTRAM-MHRWVV 191 (239)
T ss_pred EEEeCCCCCeEEEEeCCCEEEEeeCccCCHHH-HHHHHH
Confidence 999 788999999987 9999999997544 344443
No 52
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=1.9e-20 Score=183.98 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=106.7
Q ss_pred ceeEeec----cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh---hhHH
Q 007779 49 IRLTVKA----DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA---FKVL 119 (590)
Q Consensus 49 ~~~~~~~----~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~---g~~~ 119 (590)
++|.+.| |+|| ++|+++|+++.++||++ + ++..|+||| ||||+|...-+. ....
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~----~------------~~~~d~iIl-PG~G~~~~~~~~l~~~~l~ 63 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPD----V------------ILAADKLFL-PGVGTAQAAMDQLRERELI 63 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHH----H------------hCCCCEEEE-CCCCchHHHHHHHHHcChH
Confidence 4688999 9999 89999999999998862 1 334588998 999999822111 2345
Q ss_pred HHHHHHhcCCCCccc-ccchHHHHhHh---C---------ceeeccC----CCCcCcccc----C--------CceeEEe
Q 007779 120 DTILRSAKGDLKDEE-EVSKAQLGAFF---S---------AMTIRAN----AFPEATQWS----E--------GERRAMN 170 (590)
Q Consensus 120 ~~~i~~~~~~~PilG-CLGhQ~i~~~~---G---------~~v~~~~----~~~~hG~~s----~--------~~~~~~~ 170 (590)
+. ++++ ++|||| |+|||.|+.++ | ++|.|.+ +.|+.|-.. + .+.+.+.
T Consensus 64 ~~-i~~~--~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~~~~l~~~l~~~~~v~ 140 (196)
T PRK13170 64 DL-IKAC--TQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQAGHPLFQGIEDGSYFY 140 (196)
T ss_pred HH-HHHc--CCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCCCChhhhCCCcCCEEE
Confidence 55 5544 599999 99999999998 3 4666641 234444321 1 2368999
Q ss_pred ccchhccccCCCcEEEEe-ecCCcEEEEEcC----CCCcccCCC--chhhH-HHHHHH
Q 007779 171 TFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND--PREMR-LVGALR 220 (590)
Q Consensus 171 ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~----~gvQfHPEs--~~~m~-L~~~L~ 220 (590)
+|||+. +|++..++| ++.|..|...+. ||+|||||+ +.|+. |+|||+
T Consensus 141 ~~Hs~~---lp~~~~~la~s~~~~~~~~~~~~~~i~G~QFHPE~~~~~G~~~l~nfl~ 195 (196)
T PRK13170 141 FVHSYA---MPVNEYTIAQCNYGEPFSAAIQKDNFFGVQFHPERSGAAGAQLLKNFLE 195 (196)
T ss_pred EECeee---cCCCCcEEEEecCCCeEEEEEEcCCEEEEECCCCCcccccHHHHHHHhh
Confidence 999985 466666778 666776655553 999999998 66776 888764
No 53
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.82 E-value=1.9e-20 Score=185.92 Aligned_cols=148 Identities=9% Similarity=-0.072 Sum_probs=100.5
Q ss_pred cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc----hhhhhHHHHHHHHhcCC
Q 007779 56 DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE----DEAFKVLDTILRSAKGD 129 (590)
Q Consensus 56 ~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~----~~~g~~~~~~i~~~~~~ 129 (590)
|+-| ++++.+|.++.++++++ + ++.+|+|| +||||+|... .+.+.. +.|.+.+..+
T Consensus 13 N~~sl~~al~~~g~~v~vv~~~~----~------------l~~~d~iI-lPG~g~~~~~~~~l~~~gl~-~~i~~~~~~~ 74 (210)
T CHL00188 13 NLHSVSRAIQQAGQQPCIINSES----E------------LAQVHALV-LPGVGSFDLAMKKLEKKGLI-TPIKKWIAEG 74 (210)
T ss_pred cHHHHHHHHHHcCCcEEEEcCHH----H------------hhhCCEEE-ECCCCchHHHHHHHHHCCHH-HHHHHHHHcC
Confidence 5555 88999999999998752 1 22347666 7999998611 011333 3425556678
Q ss_pred CCccc-ccchHHHHhH-----------hCceeeccC-----CCCcCcccc----------------C--CceeEEeccch
Q 007779 130 LKDEE-EVSKAQLGAF-----------FSAMTIRAN-----AFPEATQWS----------------E--GERRAMNTFWP 174 (590)
Q Consensus 130 ~PilG-CLGhQ~i~~~-----------~G~~v~~~~-----~~~~hG~~s----------------~--~~~~~~~ryHs 174 (590)
+|+|| |||||.|++. +.|+|.+++ +.|+.|-+. . .+.+.+.+|||
T Consensus 75 ~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~~~HS 154 (210)
T CHL00188 75 NPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAYFVHS 154 (210)
T ss_pred CCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCCCEEEEeCc
Confidence 99999 9999999987 456666662 234445110 1 23678999999
Q ss_pred hccc-cCCCcEEEEe-e-cCCcEEEEEcC--CCCcccCCC--chhhH-HHHHHHH
Q 007779 175 LLMR-ALPPDVIFIA-D-PEGSIMGGGGS--IGPHYSGND--PREMR-LVGALRE 221 (590)
Q Consensus 175 l~v~-~~p~~l~v~a-~-~~g~im~~~h~--~gvQfHPEs--~~~m~-L~~~L~k 221 (590)
+.|. .-+..+..++ . .++.+|++++. ||||||||+ +.|.. |+|||+|
T Consensus 155 ~~v~p~~~~~l~~t~~~~~~~~v~a~~~~~i~GvQFHPE~s~~~G~~il~nfl~~ 209 (210)
T CHL00188 155 YGVMPKSQACATTTTFYGKQQMVAAIEYDNIFAMQFHPEKSGEFGLWLLREFMKK 209 (210)
T ss_pred cEecCCCCceEEEEEecCCcceEEEEecCCEEEEecCCccccHhHHHHHHHHHhh
Confidence 9884 1123344444 3 36779999987 999999998 55666 9999876
No 54
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.79 E-value=1.4e-19 Score=177.56 Aligned_cols=139 Identities=10% Similarity=0.062 Sum_probs=100.5
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCch---hhhhHHHHHHHH-hcCCCCccc-
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRED---EAFKVLDTILRS-AKGDLKDEE- 134 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~---~~g~~~~~~i~~-~~~~~PilG- 134 (590)
++|+++|.++.+++|+. + ++.+|+||| ||||.|.... ......+. +++ ....+|+||
T Consensus 16 ~~l~~~g~~v~v~~~~~----~------------l~~~d~iii-pG~~~~~~~~~~~~~~~~~~~-i~~~~~~~~pilGi 77 (198)
T cd01748 16 NALERLGAEVIITSDPE----E------------ILSADKLIL-PGVGAFGDAMANLRERGLIEA-LKEAIASGKPFLGI 77 (198)
T ss_pred HHHHHCCCeEEEEcChH----H------------hccCCEEEE-CCCCcHHHHHHHHHHcChHHH-HHHHHHCCCcEEEE
Confidence 78899999999998753 1 334688999 9999886210 00124666 555 446799999
Q ss_pred ccchHHHHhH------------hCceeeccCCC------CcCcccc----C------C--ceeEEeccchhccccCCCcE
Q 007779 135 EVSKAQLGAF------------FSAMTIRANAF------PEATQWS----E------G--ERRAMNTFWPLLMRALPPDV 184 (590)
Q Consensus 135 CLGhQ~i~~~------------~G~~v~~~~~~------~~hG~~s----~------~--~~~~~~ryHsl~v~~~p~~l 184 (590)
|+|+|.|+.+ ||++|.+. +. +++|..+ + + ..+.+.+|||+.|.. |+.+
T Consensus 78 C~G~q~l~~~~~~g~~~~~lg~~~g~v~~~-~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~~~v~~~Hs~~v~~-~~~~ 155 (198)
T cd01748 78 CLGMQLLFESSEEGGGTKGLGLIPGKVVRF-PASEGLKVPHMGWNQLEITKESPLFKGIPDGSYFYFVHSYYAPP-DDPD 155 (198)
T ss_pred CHHHHHhccccccCCCCCCCCCcceEEEEC-CCCCCceEEEeccceEEECCCChhhhCCCCCCeEEEEeEEEEec-CCcc
Confidence 9999999998 88999998 54 4778664 1 1 268899999999964 4457
Q ss_pred EEEe-ecCCcEEEEEcC----CCCcccCCC--chhhH-HHHH
Q 007779 185 IFIA-DPEGSIMGGGGS----IGPHYSGND--PREMR-LVGA 218 (590)
Q Consensus 185 ~v~a-~~~g~im~~~h~----~gvQfHPEs--~~~m~-L~~~ 218 (590)
.++| ++++..|...+. ||||||||+ +.|.. ++||
T Consensus 156 ~~la~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~~~~nf 197 (198)
T cd01748 156 YILATTDYGGKFPAAVEKDNIFGTQFHPEKSGKAGLKLLKNF 197 (198)
T ss_pred eEEEEecCCCeEEEEEEcCCEEEEECCCccccHhHHHHHHhh
Confidence 7888 666655554443 999999999 34443 5554
No 55
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.78 E-value=3.7e-19 Score=173.82 Aligned_cols=133 Identities=12% Similarity=0.020 Sum_probs=101.2
Q ss_pred eccccH---HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCC--------------chhhh
Q 007779 54 KADLDS---ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLR--------------EDEAF 116 (590)
Q Consensus 54 ~~~~d~---~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~--------------~~~~g 116 (590)
.|.|+. .+|+++|..+.+++++.- .++.. ..++.+|+|||++||..... .....
T Consensus 17 ~~~~~~~~~~~l~~~G~~~~iv~~~~~-~~~~~--------~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~ 87 (189)
T cd01745 17 RDYLNQYYVDAVRKAGGLPVLLPPVDD-EEDLE--------QYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDA 87 (189)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCCC-hHHHH--------HHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHH
Confidence 455565 456667999999988742 11100 11456799999999976321 01112
Q ss_pred hHHHHHHHHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCcCccccCCceeEEeccchhccccCCCcEEEEe-ecCCc
Q 007779 117 KVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIA-DPEGS 193 (590)
Q Consensus 117 ~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s~~~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~ 193 (590)
...++ ++.+ ..++|+|| |+|||.|+.++||+|.+. + .+.+||++.|..+|++++++| ++||.
T Consensus 88 ~~~~~-~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~-~-------------~v~~~H~~~v~~~~~~~~vla~~~d~~ 152 (189)
T cd01745 88 FELAL-LRAALERGKPILGICRGMQLLNVALGGTLYQD-I-------------RVNSLHHQAIKRLADGLRVEARAPDGV 152 (189)
T ss_pred HHHHH-HHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC-C-------------ceechHHHHHhhcCCCCEEEEECCCCc
Confidence 34566 6664 46799999 999999999999999988 4 678999999999999999999 88999
Q ss_pred EEEEEcC-----CCCcccCCCc
Q 007779 194 IMGGGGS-----IGPHYSGNDP 210 (590)
Q Consensus 194 im~~~h~-----~gvQfHPEs~ 210 (590)
|||++|+ ||||||||..
T Consensus 153 vea~~~~~~~~~~gvQfHPE~~ 174 (189)
T cd01745 153 IEAIESPDRPFVLGVQWHPEWL 174 (189)
T ss_pred EEEEEeCCCCeEEEEecCCCcC
Confidence 9999985 9999999983
No 56
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.78 E-value=5.6e-19 Score=174.08 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=101.2
Q ss_pred cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhH------HHHHHHH-h
Q 007779 56 DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKV------LDTILRS-A 126 (590)
Q Consensus 56 ~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~------~~~~i~~-~ 126 (590)
|+-| ++|+.+|.++.++||++ + ++.+|+||| ||||+|. ++... .+.|++. +
T Consensus 11 n~~~v~~~l~~~g~~~~~~~~~~----~------------l~~~d~lil-PG~g~~~---~~~~~l~~~~~~~~l~~~~~ 70 (201)
T PRK13152 11 NLNSVAKAFEKIGAINFIAKNPK----D------------LQKADKLLL-PGVGSFK---EAMKNLKELGFIEALKEQVL 70 (201)
T ss_pred cHHHHHHHHHHCCCeEEEECCHH----H------------HcCCCEEEE-CCCCchH---HHHHHHHHcCcHHHHHHHHH
Confidence 5555 88999999999998874 1 234589999 9999997 44221 3452443 3
Q ss_pred cCCCCccc-ccchHHHHhH------------hCceeeccCC-----CCcCccccC-------------CceeEEeccchh
Q 007779 127 KGDLKDEE-EVSKAQLGAF------------FSAMTIRANA-----FPEATQWSE-------------GERRAMNTFWPL 175 (590)
Q Consensus 127 ~~~~PilG-CLGhQ~i~~~------------~G~~v~~~~~-----~~~hG~~s~-------------~~~~~~~ryHsl 175 (590)
..++|+|| |+|+|.|+.+ ++++|.|. + .+.|++|.+ ++.+.+.+|||+
T Consensus 71 ~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~-~~~~~~~~~~~g~~~v~~~~~~~l~~~l~~~~~~~~vHS~ 149 (201)
T PRK13152 71 VQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKF-EEDLNLKIPHMGWNELEILKQSPLYQGIPEKSDFYFVHSF 149 (201)
T ss_pred hCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEEC-CCCCCCcCCccCeEEEEECCCChhhhCCCCCCeEEEEccc
Confidence 56899999 9999999997 23788876 3 235766641 236789999999
Q ss_pred ccccCCCcEEEEe-ecCC--cEEEEEcC--CCCcccCCC--chhhH-HHHHHH
Q 007779 176 LMRALPPDVIFIA-DPEG--SIMGGGGS--IGPHYSGND--PREMR-LVGALR 220 (590)
Q Consensus 176 ~v~~~p~~l~v~a-~~~g--~im~~~h~--~gvQfHPEs--~~~m~-L~~~L~ 220 (590)
.+..++ ..+++ ++++ .++++++. ||||||||+ +.|.. +++|++
T Consensus 150 ~v~~~~--~~v~a~~~~g~~~~~a~~~~~i~GvQFHPE~~~~~g~~ll~~Fl~ 200 (201)
T PRK13152 150 YVKCKD--EFVSAKAQYGHKFVASLQKDNIFATQFHPEKSQNLGLKLLENFAR 200 (201)
T ss_pred EeecCC--CcEEEEECCCCEEEEEEecCCEEEEeCCCeecChhhHHHHHHHHh
Confidence 997654 45666 5655 45677766 999999998 44555 777764
No 57
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.78 E-value=1.3e-18 Score=175.79 Aligned_cols=138 Identities=12% Similarity=-0.024 Sum_probs=103.0
Q ss_pred HHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchh-hhhHHHHHHHH-hcCCCCccc-ccc
Q 007779 61 LIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDE-AFKVLDTILRS-AKGDLKDEE-EVS 137 (590)
Q Consensus 61 ~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~-~g~~~~~~i~~-~~~~~PilG-CLG 137 (590)
++++.|.++.+++...-.. .+. ++.+|+|||++||.+..+... .....++ |+. +..++|+|| |+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~------~p~-----~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~-i~~~~~~~~PvlGIC~G 97 (237)
T PRK09065 30 ALGLAEQPVVVVRVFAGEP------LPA-----PDDFAGVIITGSWAMVTDRLDWSERTADW-LRQAAAAGMPLLGICYG 97 (237)
T ss_pred HhccCCceEEEEeccCCCC------CCC-----hhhcCEEEEeCCCcccCCCchhHHHHHHH-HHHHHHCCCCEEEEChh
Confidence 4445578888887763211 111 456899999999988653211 2334566 555 445799999 999
Q ss_pred hHHHHhHhCceeeccCCCC-cCcccc-----C----------CceeEEeccchhccccCCCcEEEEe-ecCCcEEEEEcC
Q 007779 138 KAQLGAFFSAMTIRANAFP-EATQWS-----E----------GERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS 200 (590)
Q Consensus 138 hQ~i~~~~G~~v~~~~~~~-~hG~~s-----~----------~~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~ 200 (590)
||+|+.++||+|.+. +.+ ++|... . ++.+.+..||++.|.++|++++++| ++++.++|++++
T Consensus 98 ~Qlla~alGg~V~~~-~~g~e~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v~~lp~~~~~la~s~~~~iqa~~~~ 176 (237)
T PRK09065 98 HQLLAHALGGEVGYN-PAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTHLQSVLRLPPGAVVLARSAQDPHQAFRYG 176 (237)
T ss_pred HHHHHHHcCCccccC-CCCCccceEEEEEccccccChhhhcCCccCcEeeehhhhhhhCCCCCEEEEcCCCCCeeEEEeC
Confidence 999999999999987 553 445332 1 2368889999999999999999999 778899999997
Q ss_pred ---CCCcccCCCch
Q 007779 201 ---IGPHYSGNDPR 211 (590)
Q Consensus 201 ---~gvQfHPEs~~ 211 (590)
||+|||||-..
T Consensus 177 ~~i~gvQfHPE~~~ 190 (237)
T PRK09065 177 PHAWGVQFHPEFTA 190 (237)
T ss_pred CCEEEEEeCCcCCH
Confidence 99999999743
No 58
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.78 E-value=5.2e-18 Score=172.05 Aligned_cols=142 Identities=13% Similarity=0.039 Sum_probs=102.6
Q ss_pred HHHHHhCCc---eEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc--hhhhh---HH----HHHHHH-h
Q 007779 60 ALIDQLGLK---ESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE--DEAFK---VL----DTILRS-A 126 (590)
Q Consensus 60 ~~~~~lg~~---~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~--~~~g~---~~----~~~i~~-~ 126 (590)
.++++.|.. +.++|.+.-... .+. ++.+|+|||++||.+|.+. ++..- .. ++ ++. .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~-i~~~~ 90 (242)
T PRK07567 22 AFLRYTGLDPAELRRIRLDREPLP-------DLD---LDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGL-LDEVV 90 (242)
T ss_pred HHHHhcCCCccceEEEecccCCCC-------CCC---HhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHH-HHHHH
Confidence 778888865 777777653211 111 5678999999999999753 11111 12 22 222 2
Q ss_pred cCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc-----C----------CceeEEeccchhccccCCCcEEEEe-e
Q 007779 127 KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS-----E----------GERRAMNTFWPLLMRALPPDVIFIA-D 189 (590)
Q Consensus 127 ~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s-----~----------~~~~~~~ryHsl~v~~~p~~l~v~a-~ 189 (590)
..++|+|| |+|||.|+.++||+|.+. ....-|... . +..+.+.++|++.|.++|++++++| +
T Consensus 91 ~~~~PvLGIC~G~Qlla~a~GG~V~~~-~g~e~G~~~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~lp~~~~vlA~s 169 (242)
T PRK07567 91 ARDFPFLGACYGVGTLGHHQGGVVDRT-YGEPVGAVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSALPPGAVLLATS 169 (242)
T ss_pred hcCCCEEEEchhHHHHHHHcCCEEecC-CCCcCccEEEEECCccCCChhhcCCCCceEEEeehhhhhhhCCCCCEEEEeC
Confidence 46799999 999999999999999984 322222211 0 2368888999999999999999999 7
Q ss_pred cCCcEEEEEcC---CCCcccCCCchhh
Q 007779 190 PEGSIMGGGGS---IGPHYSGNDPREM 213 (590)
Q Consensus 190 ~~g~im~~~h~---~gvQfHPEs~~~m 213 (590)
+++.+||+++. ||+|||||-...+
T Consensus 170 ~~~~vqa~~~~~~~~gvQfHPE~~~~~ 196 (242)
T PRK07567 170 PTCPVQMFRVGENVYATQFHPELDADG 196 (242)
T ss_pred CCCCEEEEEeCCCEEEEEeCCcCCHHH
Confidence 78899999986 9999999975443
No 59
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.77 E-value=8.5e-19 Score=172.43 Aligned_cols=150 Identities=12% Similarity=0.059 Sum_probs=106.1
Q ss_pred eEeec----cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc----hhhhhHHH
Q 007779 51 LTVKA----DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE----DEAFKVLD 120 (590)
Q Consensus 51 ~~~~~----~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~----~~~g~~~~ 120 (590)
|++.| |+|| .+++.+|+++.++++++ + ++.+|+||+ ||||+|... .+.+ ..+
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~----~------------l~~~d~lil-pG~g~~~~~~~~l~~~~-~~~ 63 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSSDPE----E------------IAGADKVIL-PGVGAFGQAMRSLRESG-LDE 63 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEcChH----H------------hccCCEEEE-CCCCCHHHHHHHHHHCC-hHH
Confidence 67888 9999 89999999999986632 1 334588875 999988521 1123 345
Q ss_pred HHHHHhcCCCCccc-ccchHHHHhH-----------hCceeeccCCC-----CcCcccc----C--------CceeEEec
Q 007779 121 TILRSAKGDLKDEE-EVSKAQLGAF-----------FSAMTIRANAF-----PEATQWS----E--------GERRAMNT 171 (590)
Q Consensus 121 ~~i~~~~~~~PilG-CLGhQ~i~~~-----------~G~~v~~~~~~-----~~hG~~s----~--------~~~~~~~r 171 (590)
.|.+....++|+|| |+|||.|+.+ +|++|.|. +. +++|..+ . ++.+.+.+
T Consensus 64 ~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~-~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~~~~~~ 142 (199)
T PRK13181 64 ALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRF-RSEPLKVPQMGWNSVKPLKESPLFKGIEEGSYFYF 142 (199)
T ss_pred HHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEc-CCCCCCCCccCccccccCCCChhHcCCCCCCEEEE
Confidence 52444556799999 9999999999 88999997 43 4666543 1 23678899
Q ss_pred cchhccccCCCcEEEEe-ecCCcEE--EEEcC--CCCcccCCC--chhhH-HHHHHH
Q 007779 172 FWPLLMRALPPDVIFIA-DPEGSIM--GGGGS--IGPHYSGND--PREMR-LVGALR 220 (590)
Q Consensus 172 yHsl~v~~~p~~l~v~a-~~~g~im--~~~h~--~gvQfHPEs--~~~m~-L~~~L~ 220 (590)
|||+.+...|. ..++| +++|..| +++++ ||||||||+ +.+.. +++|++
T Consensus 143 ~Hs~~v~~~~~-~~~lA~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~nfl~ 198 (199)
T PRK13181 143 VHSYYVPCEDP-EDVLATTEYGVPFCSAVAKDNIYAVQFHPEKSGKAGLKLLKNFAE 198 (199)
T ss_pred eCeeEeccCCc-ccEEEEEcCCCEEEEEEECCCEEEEECCCccCCHHHHHHHHHHHh
Confidence 99999865553 56788 6656654 44444 999999998 44444 777653
No 60
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.77 E-value=2.5e-18 Score=191.42 Aligned_cols=164 Identities=12% Similarity=0.043 Sum_probs=123.3
Q ss_pred eeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 50 RLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 50 ~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
+|+++|.=+. ..++++|..+.++..+. +.++.. . . .+|+||||+||.++.+.+ +....+.++
T Consensus 5 ~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~-~~~~l~----~-----~-~~dgIIlsGGp~sv~~~~-~p~~~~~i~ 72 (511)
T PRK00074 5 KILILDFGSQYTQLIARRVRELGVYSEIVPYDI-SAEEIR----A-----F-NPKGIILSGGPASVYEEG-APRADPEIF 72 (511)
T ss_pred EEEEEECCCCcHHHHHHHHHHCCCeEEEEECCC-CHHHHh----c-----c-CCCEEEECCCCcccccCC-CccccHHHH
Confidence 4677776443 56888999999998763 222211 0 1 358999999999876422 223333313
Q ss_pred HHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccccCCCcEEEEe-e
Q 007779 124 RSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIA-D 189 (590)
Q Consensus 124 ~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a-~ 189 (590)
..++|+|| |+|||.|+.++||+|.+. +.+++|... + ++.+.++.+|++.|..+|++++++| +
T Consensus 73 ---~~~~PvLGIC~G~QlLa~~lGG~V~~~-~~~e~G~~~i~i~~~~~Lf~~l~~~~~v~~~H~d~V~~lp~g~~vlA~s 148 (511)
T PRK00074 73 ---ELGVPVLGICYGMQLMAHQLGGKVERA-GKREYGRAELEVDNDSPLFKGLPEEQDVWMSHGDKVTELPEGFKVIAST 148 (511)
T ss_pred ---hCCCCEEEECHHHHHHHHHhCCeEEec-CCcccceEEEEEcCCChhhhcCCCceEEEEECCeEEEecCCCcEEEEEe
Confidence 34799999 999999999999999998 777888553 1 2357889999999999999999999 8
Q ss_pred cCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhh-cCCCCC
Q 007779 190 PEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVL-AGGHLG 229 (590)
Q Consensus 190 ~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~-~G~~Lt 229 (590)
+++.++|++|+ ||||||||. +.|+. |++|+.++. .-++.+
T Consensus 149 ~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~ 197 (511)
T PRK00074 149 ENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWT 197 (511)
T ss_pred CCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCcc
Confidence 88999999985 999999998 56777 999996653 445555
No 61
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.77 E-value=1.5e-18 Score=194.37 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=121.1
Q ss_pred cccceeEeecc-ccHHHHHHh---CCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHH
Q 007779 46 GRRIRLTVKAD-LDSALIDQL---GLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDT 121 (590)
Q Consensus 46 ~~~~~~~~~~~-~d~~~~~~l---g~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~ 121 (590)
|+..+|...|- +--+.++-| |++++|+.+|-. +. -+.||||+||+|||+|+ -.....+.
T Consensus 170 Gk~~~I~aiDcG~K~N~IRcL~~RGa~vtVvPw~~~-i~-------------~~~yDGlflSNGPGdPe---~~~~~v~~ 232 (1435)
T KOG0370|consen 170 GKSLRILAIDCGLKYNQIRCLVKRGAEVTVVPWDYP-IA-------------KEEYDGLFLSNGPGDPE---LCPLLVQN 232 (1435)
T ss_pred CcccEEEEcccCchHHHHHHHHHhCceEEEecCCcc-cc-------------ccccceEEEeCCCCCch---hhHHHHHH
Confidence 33445544432 222556655 999999988732 11 12579999999999999 55555555
Q ss_pred HHHHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------CCceeEEeccchhccc--cCCCcEEEEe--e
Q 007779 122 ILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------EGERRAMNTFWPLLMR--ALPPDVIFIA--D 189 (590)
Q Consensus 122 ~i~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~~~~~~~~ryHsl~v~--~~p~~l~v~a--~ 189 (590)
++++ ..++|++| |||||.++.+.|++++++ +++.||++. +|+.+.++++|+|+|+ ++|.++..+. .
T Consensus 233 -vr~lL~~~~PvfGIClGHQllA~AaGakT~Km-KyGNRGhNiP~~~~~tGrc~ITSQNHGYAVD~~tLp~gWk~lFvN~ 310 (1435)
T KOG0370|consen 233 -VRELLESNVPVFGICLGHQLLALAAGAKTYKM-KYGNRGHNIPCTCRATGRCFITSQNHGYAVDPATLPAGWKPLFVNA 310 (1435)
T ss_pred -HHHHHhCCCCeEEEehhhHHHHHhhCCceEEe-eccccCCCccceeccCceEEEEecCCceeeccccccCCCchheeec
Confidence 4443 33599999 999999999999999999 999999996 5889999999999994 8999998888 6
Q ss_pred cCCcEEEEEcC----CCCcccCCC---chhhH--HHHHHHHhhc
Q 007779 190 PEGSIMGGGGS----IGPHYSGND---PREMR--LVGALREVLA 224 (590)
Q Consensus 190 ~~g~im~~~h~----~gvQfHPEs---~~~m~--L~~~L~kl~~ 224 (590)
+||+-.|+.|. +.||||||+ +.... +..|+..+..
T Consensus 311 NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk 354 (1435)
T KOG0370|consen 311 NDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKK 354 (1435)
T ss_pred ccCCCceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHH
Confidence 78999999997 999999998 33332 4555544433
No 62
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.76 E-value=3.4e-18 Score=166.06 Aligned_cols=136 Identities=11% Similarity=0.023 Sum_probs=105.8
Q ss_pred HHHHHhC---CceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCC-CCc-hhhhhHHHHHHHHh-cCCCCcc
Q 007779 60 ALIDQLG---LKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRP-LRE-DEAFKVLDTILRSA-KGDLKDE 133 (590)
Q Consensus 60 ~~~~~lg---~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P-~~~-~~~g~~~~~~i~~~-~~~~Pil 133 (590)
.+++++| .++++++.+.-.. ...++.+|+|||++||.++ .+. .......++ ++.+ ...+|++
T Consensus 18 ~~l~~~g~~~~~~~~~~~~~~~~-----------~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~-i~~~~~~~~pil 85 (188)
T cd01741 18 DLLREAGAETIEIDVVDVYAGEL-----------LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKEL-IRQALAAGKPVL 85 (188)
T ss_pred HHHHhcCCCCceEEEEecCCCCC-----------CCCcccCCEEEECCCCccCCccCChHHHHHHHH-HHHHHHCCCCEE
Confidence 7888888 6888888875221 0115678999999999988 211 112345666 6654 4569999
Q ss_pred c-ccchHHHHhHhCceeeccCCCCcCcccc------C----------CceeEEeccchhccccCCCcEEEEe-ecCCcEE
Q 007779 134 E-EVSKAQLGAFFSAMTIRANAFPEATQWS------E----------GERRAMNTFWPLLMRALPPDVIFIA-DPEGSIM 195 (590)
Q Consensus 134 G-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~----------~~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im 195 (590)
| |+|||.|+.++||+|.+. +...|..+. + .+.+.+.++|++.|..+|++++++| ++++.++
T Consensus 86 giC~G~q~l~~~lGG~v~~~-~~~~~~g~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~lp~~~~~la~~~~~~v~ 164 (188)
T cd01741 86 GICLGHQLLARALGGKVGRN-PKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVVELPPGAVLLASSEACPNQ 164 (188)
T ss_pred EECccHHHHHHHhCCEEecC-CCcceeEEEEEEeccccccCchhhcCCCcceEEEEeccChhhCCCCCEEeecCCCCCcc
Confidence 9 999999999999999998 665444433 1 1368899999999999999999999 7889999
Q ss_pred EEEcC---CCCcccCC
Q 007779 196 GGGGS---IGPHYSGN 208 (590)
Q Consensus 196 ~~~h~---~gvQfHPE 208 (590)
|++++ ||+|||||
T Consensus 165 ~~~~~~~~~g~QfHPE 180 (188)
T cd01741 165 AFRYGDRALGLQFHPE 180 (188)
T ss_pred eEEecCCEEEEccCch
Confidence 99986 99999999
No 63
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.75 E-value=2.9e-18 Score=169.29 Aligned_cols=143 Identities=10% Similarity=0.035 Sum_probs=101.6
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh---hhHHHHHHHH-hcCCCCccc-
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA---FKVLDTILRS-AKGDLKDEE- 134 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~---g~~~~~~i~~-~~~~~PilG- 134 (590)
.+|+++|+++.++|++. + ++.+|+||| ||+|.+.+..+. -...+. |++ ...++|+||
T Consensus 17 ~~l~~~G~~v~~~~~~~----~------------l~~~d~iii-pG~~~~~~~~~~~~~~~~~~~-i~~~~~~~~pvlGI 78 (205)
T PRK13141 17 KALERLGAEAVITSDPE----E------------ILAADGVIL-PGVGAFPDAMANLRERGLDEV-IKEAVASGKPLLGI 78 (205)
T ss_pred HHHHHCCCeEEEECCHH----H------------hccCCEEEE-CCCCchHHHHHHHHHcChHHH-HHHHHHCCCcEEEE
Confidence 67888999999998752 1 345689998 888876521100 123556 444 456799999
Q ss_pred ccchHHHHhH------------hCceeeccCC------CCcCcccc----C--------CceeEEeccchhccccCCCcE
Q 007779 135 EVSKAQLGAF------------FSAMTIRANA------FPEATQWS----E--------GERRAMNTFWPLLMRALPPDV 184 (590)
Q Consensus 135 CLGhQ~i~~~------------~G~~v~~~~~------~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l 184 (590)
|+|||.|+.+ +|++|.+. + .++.|... + ...+.+.+|||+.+. +|+.+
T Consensus 79 C~G~Qll~~~~~~~~~~~~lg~l~g~v~~~-~~~~~~~~~~~g~~~i~~~~~~~l~~~l~~~~~v~~~Hs~~v~-~~~~~ 156 (205)
T PRK13141 79 CLGMQLLFESSEEFGETEGLGLLPGRVRRF-PPEEGLKVPHMGWNQLELKKESPLLKGIPDGAYVYFVHSYYAD-PCDEE 156 (205)
T ss_pred CHHHHHhhhccccCCCCCccceEEEEEEEc-CCCCCCcccEecCccceeCCCChhhhCCCCCCEEEEECeeEec-cCCcC
Confidence 9999999997 78999988 5 22333322 1 125688899999994 66778
Q ss_pred EEEe-ecCC-cEEEEEcC---CCCcccCCC--chhhH-HHHHHHHh
Q 007779 185 IFIA-DPEG-SIMGGGGS---IGPHYSGND--PREMR-LVGALREV 222 (590)
Q Consensus 185 ~v~a-~~~g-~im~~~h~---~gvQfHPEs--~~~m~-L~~~L~kl 222 (590)
.++| ++++ .++++++. ||||||||+ +.+.. +++|++.+
T Consensus 157 ~v~a~~~~~~~~~a~~~~~~i~GvQfHPE~~~~~g~~l~~~fl~~~ 202 (205)
T PRK13141 157 YVAATTDYGVEFPAAVGKDNVFGAQFHPEKSGDVGLKILKNFVEMV 202 (205)
T ss_pred eEEEEEeCCcEEEEEEecCCEEEEeCCCccchHHHHHHHHHHHHHh
Confidence 8888 6655 68888665 999999998 44544 78887654
No 64
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.74 E-value=8.2e-18 Score=165.53 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=108.7
Q ss_pred HHHHHhC-CceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchh--hhhHHHHHHHHh-cCCCCccc-
Q 007779 60 ALIDQLG-LKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDE--AFKVLDTILRSA-KGDLKDEE- 134 (590)
Q Consensus 60 ~~~~~lg-~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~--~g~~~~~~i~~~-~~~~PilG- 134 (590)
..++++| .-..++.++. +..++. .+++|+||||.||-+.. +++ ++...+. |+.+ ...+|+||
T Consensus 19 r~~re~g~v~~e~~~~~~-~~~~~~----------~~~~~giIlsGgp~sv~-~~~~w~~~~~~~-i~~~~~p~~pvLGI 85 (198)
T COG0518 19 RRLRELGYVYSEIVPYTG-DAEELP----------LDSPDGIIISGGPMSVY-DEDPWLPREKDL-IKDAGVPGKPVLGI 85 (198)
T ss_pred HHHHHcCCceEEEEeCCC-Cccccc----------ccCCCEEEEcCCCCCCc-cccccchhHHHH-HHHhCCCCCCEEEE
Confidence 4467788 5555555553 233211 33569999999997664 334 7778888 5544 34567999
Q ss_pred ccchHHHHhHhCceeeccCCCCcCcccc---C--------C--cee-EEeccchhccccCCCcEEEEe-ecCCcEEEEEc
Q 007779 135 EVSKAQLGAFFSAMTIRANAFPEATQWS---E--------G--ERR-AMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGG 199 (590)
Q Consensus 135 CLGhQ~i~~~~G~~v~~~~~~~~hG~~s---~--------~--~~~-~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h 199 (590)
|+|||.|+.++||+|.+. +..+-|... . | ..+ .++..|+..|..+|+.++++| ++.+.+.|+++
T Consensus 86 C~G~Ql~A~~lGg~V~~~-~~~E~G~~~v~~~~~~~~l~~gl~~~~~~v~~sH~D~v~~lP~g~~vlA~s~~cp~qa~~~ 164 (198)
T COG0518 86 CLGHQLLAKALGGKVERG-PKREIGWTPVELTEGDDPLFAGLPDLFTTVFMSHGDTVVELPEGAVVLASSETCPNQAFRY 164 (198)
T ss_pred ChhHHHHHHHhCCEEecc-CCCccceEEEEEecCccccccCCccccCccccchhCccccCCCCCEEEecCCCChhhheec
Confidence 999999999999999998 555666553 1 2 245 489999999999999999999 77778888888
Q ss_pred C---CCCcccCCCc--hhhH-HHHHHHHh
Q 007779 200 S---IGPHYSGNDP--REMR-LVGALREV 222 (590)
Q Consensus 200 ~---~gvQfHPEs~--~~m~-L~~~L~kl 222 (590)
. ||||||||-. .+.+ ++++..++
T Consensus 165 ~~~~~gvQFHpEv~~~~~~~~l~nf~~~i 193 (198)
T COG0518 165 GKRAYGVQFHPEVTHEYGEALLENFAHEI 193 (198)
T ss_pred CCcEEEEeeeeEEeHHHHHHHHHHhhhhh
Confidence 6 9999999984 4444 66665433
No 65
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.74 E-value=6.4e-18 Score=166.00 Aligned_cols=142 Identities=10% Similarity=0.039 Sum_probs=97.3
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCch-hhhhH-HHHHHH-HhcCCCCccc-c
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRED-EAFKV-LDTILR-SAKGDLKDEE-E 135 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~-~~g~~-~~~~i~-~~~~~~PilG-C 135 (590)
++++++|.+++|+||+. + ++.+|+||+ ||||.|.+.. ..... .+.+++ .+..++|+|| |
T Consensus 16 ~~l~~~g~~v~v~~~~~----~------------l~~~d~lii-~G~~~~~~~~~~l~~~~~~~l~~~~~~~~~pvlGiC 78 (196)
T TIGR01855 16 RALKRVGAEPVVVKDSK----E------------AELADKLIL-PGVGAFGAAMARLRENGLDLFVELVVRLGKPVLGIC 78 (196)
T ss_pred HHHHHCCCcEEEEcCHH----H------------hccCCEEEE-CCCCCHHHHHHHHHHcCcHHHHHHHHhCCCCEEEEC
Confidence 77889999999999862 1 335688887 9999886210 01111 344235 3556799999 9
Q ss_pred cchHHHHhH------------hCceeeccC--CCCcCcccc----------C--CceeEEeccchhccccCCCcEEEEe-
Q 007779 136 VSKAQLGAF------------FSAMTIRAN--AFPEATQWS----------E--GERRAMNTFWPLLMRALPPDVIFIA- 188 (590)
Q Consensus 136 LGhQ~i~~~------------~G~~v~~~~--~~~~hG~~s----------~--~~~~~~~ryHsl~v~~~p~~l~v~a- 188 (590)
+|+|.|+.+ +|++|.|.+ +.+++|... . ++.+.+.+|||+.|...| .. +++
T Consensus 79 ~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~v~~~Hs~~v~~~~-~~-~~a~ 156 (196)
T TIGR01855 79 LGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLLNGIDEGAYFYFVHSYYAVCEE-EA-VLAY 156 (196)
T ss_pred HHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeCCCChHHhCCCCCCEEEEECeeEecCCC-Cc-EEEE
Confidence 999999999 799999872 234666432 1 236889999999996444 44 555
Q ss_pred ecCCcEEEEEcC----CCCcccCCCc--hhhH-HHHHHH
Q 007779 189 DPEGSIMGGGGS----IGPHYSGNDP--REMR-LVGALR 220 (590)
Q Consensus 189 ~~~g~im~~~h~----~gvQfHPEs~--~~m~-L~~~L~ 220 (590)
+++|..|...++ ||+|||||+. .+.. +++|++
T Consensus 157 ~~~g~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~~f~~ 195 (196)
T TIGR01855 157 ADYGEKFPAAVQKGNIFGTQFHPEKSGKTGLKLLENFLE 195 (196)
T ss_pred EcCCcEEEEEEecCCEEEEECCCccCcHhHHHHHHHHHh
Confidence 667665544444 9999999983 3444 666654
No 66
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.73 E-value=1.1e-17 Score=170.69 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=93.8
Q ss_pred ccCCCeEEECCCCCC--CC------Cchh--h---hhHHHHHHHH-hcCCCCccc-ccchHHHHhHhCceeeccC----C
Q 007779 94 LEAQAKVCTGPTQTR--PL------REDE--A---FKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRAN----A 154 (590)
Q Consensus 94 ~~~~~~ivlspGPg~--P~------~~~~--~---g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~~----~ 154 (590)
++.+|||||+.||.+ |. +... . -..+++ ++. +..++|+|| |+|||.|+.+|||++.+.. .
T Consensus 59 l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~l-i~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~ 137 (254)
T PRK11366 59 LPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMAL-INAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPE 137 (254)
T ss_pred HHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHH-HHHHHHCCCCEEEECHhHHHHHHHhCCeEeeccccccc
Confidence 556799999999864 31 0000 0 123455 665 556899999 9999999999999999741 1
Q ss_pred CCcCcc------------cc-----C--------C--ceeEEeccchhccccCCCcEEEEe-ecCCcEEEEEcC-----C
Q 007779 155 FPEATQ------------WS-----E--------G--ERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS-----I 201 (590)
Q Consensus 155 ~~~hG~------------~s-----~--------~--~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~-----~ 201 (590)
...|++ ++ . + +.+.|.+||+..|+.+|++++++| ++||.|||++|+ +
T Consensus 138 ~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~~~~~Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~ 217 (254)
T PRK11366 138 LLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPECSNFWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHPFAL 217 (254)
T ss_pred ccccccCCccccccccCCceEEEECCCCcHHHhcCCCceEEeehHHHHHHhhcccceEEEEEcCCCcEEEEEeCCCCCEE
Confidence 113443 11 0 1 257899999999999999999999 899999999986 7
Q ss_pred CCcccCCC---chh--hH-HHHHHHHh
Q 007779 202 GPHYSGND---PRE--MR-LVGALREV 222 (590)
Q Consensus 202 gvQfHPEs---~~~--m~-L~~~L~kl 222 (590)
|||||||+ +.+ .. +++|++..
T Consensus 218 GVQwHPE~~~~~~~~~~~lf~~fv~~~ 244 (254)
T PRK11366 218 GVQWHPEWNSSEYALSRILFEGFITAC 244 (254)
T ss_pred EEEeCCCcCCCCCchHHHHHHHHHHHH
Confidence 99999998 233 33 77777655
No 67
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.72 E-value=6.9e-17 Score=163.05 Aligned_cols=141 Identities=8% Similarity=-0.003 Sum_probs=105.9
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh---hhHHHHHHHH-hcCCCCccc-
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA---FKVLDTILRS-AKGDLKDEE- 134 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~---g~~~~~~i~~-~~~~~PilG- 134 (590)
+++++.|.+++|+|++.-.. +.++ ++.+|+|||++||.++.+.++. ....++ |+. +..++|+||
T Consensus 21 ~~L~~~g~~~~v~~~~~~~~-------~~~~---~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~-i~~~~~~~~PvlGI 89 (234)
T PRK07053 21 QVLGARGYRVRYVDVGVDDL-------ETLD---ALEPDLLVVLGGPIGVYDDELYPFLAPEIAL-LRQRLAAGLPTLGI 89 (234)
T ss_pred HHHHHCCCeEEEEecCCCcc-------CCCC---ccCCCEEEECCCCCCCCCCCcCCcHHHHHHH-HHHHHHCCCCEEEE
Confidence 78888999999999864211 1111 4567999999999887643222 235566 555 445799999
Q ss_pred ccchHHHHhHhCceeeccCCCCcCcccc-----CC---------ceeEEeccchhccccCCCcEEEEe-ecCCcEEEEEc
Q 007779 135 EVSKAQLGAFFSAMTIRANAFPEATQWS-----EG---------ERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGG 199 (590)
Q Consensus 135 CLGhQ~i~~~~G~~v~~~~~~~~hG~~s-----~~---------~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h 199 (590)
|+|||+|+.++||+|.+. +..+.|-.. .+ ..+.+.++|+..+ ++|+..+++| ++.+.++|++.
T Consensus 90 C~G~Qlla~alGg~V~~~-~~~e~G~~~i~~t~~g~~~pl~~~~~~~~~~~~H~d~~-~lP~ga~~La~s~~~~~qaf~~ 167 (234)
T PRK07053 90 CLGAQLIARALGARVYPG-GQKEIGWAPLTLTDAGRASPLRHLGAGTPVLHWHGDTF-DLPEGATLLASTPACRHQAFAW 167 (234)
T ss_pred CccHHHHHHHcCCcEecC-CCCeEeEEEEEEeccccCChhhcCCCcceEEEEeCCEE-ecCCCCEEEEcCCCCCeeEEEe
Confidence 999999999999999986 554545332 11 2578889999987 6999999999 77778999987
Q ss_pred C---CCCcccCCCchhh
Q 007779 200 S---IGPHYSGNDPREM 213 (590)
Q Consensus 200 ~---~gvQfHPEs~~~m 213 (590)
. ||+|||||-...+
T Consensus 168 g~~~~g~QfHpE~~~~~ 184 (234)
T PRK07053 168 GNHVLALQFHPEAREDR 184 (234)
T ss_pred CCCEEEEeeCccCCHHH
Confidence 4 9999999985543
No 68
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.72 E-value=1.8e-17 Score=164.64 Aligned_cols=144 Identities=8% Similarity=-0.034 Sum_probs=98.6
Q ss_pred cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh-------hhHHHHHHHHh
Q 007779 56 DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA-------FKVLDTILRSA 126 (590)
Q Consensus 56 ~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~-------g~~~~~~i~~~ 126 (590)
|+.| +-++.++.++..+++.+ + ++.+|+|| +||||+|. ++ |.. +.|.+.+
T Consensus 11 Nl~s~~~al~~~~~~~~~~~~~~----~------------l~~~d~iI-lPG~g~~~---~~~~~l~~~gl~-~~i~~~~ 69 (210)
T PRK14004 11 NIHSCLKAVSLYTKDFVFTSDPE----T------------IENSKALI-LPGDGHFD---KAMENLNSTGLR-STIDKHV 69 (210)
T ss_pred hHHHHHHHHHHcCCeEEEECCHH----H------------hccCCEEE-ECCCCchH---HHHHHHHHcCcH-HHHHHHH
Confidence 7877 77888888777775532 1 23447765 99999986 43 443 4436667
Q ss_pred cCCCCccc-ccchHHHHhHhC------------------ceeeccC----CCCcCcccc------C--------CceeEE
Q 007779 127 KGDLKDEE-EVSKAQLGAFFS------------------AMTIRAN----AFPEATQWS------E--------GERRAM 169 (590)
Q Consensus 127 ~~~~PilG-CLGhQ~i~~~~G------------------~~v~~~~----~~~~hG~~s------~--------~~~~~~ 169 (590)
..++|+|| |||+|.|+++++ ++|.+.+ +.|+-|=+. + .+.+.+
T Consensus 70 ~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v 149 (210)
T PRK14004 70 ESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFF 149 (210)
T ss_pred HcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccCCCCccccCCCCCCEE
Confidence 77899999 999999999875 6666641 223333221 0 125789
Q ss_pred eccchhccccCCCcEEEEe-ecC-Cc-EEEEEcC---CCCcccCCC--chhhH-HHHHHHH
Q 007779 170 NTFWPLLMRALPPDVIFIA-DPE-GS-IMGGGGS---IGPHYSGND--PREMR-LVGALRE 221 (590)
Q Consensus 170 ~ryHsl~v~~~p~~l~v~a-~~~-g~-im~~~h~---~gvQfHPEs--~~~m~-L~~~L~k 221 (590)
.+|||+.++. +..+.+++ ++. |. +|++..+ ||+|||||+ +.|.. |+|||+.
T Consensus 150 ~~~HS~~~~~-~~~l~~sa~~~~~g~~~~a~~~~~~i~GvQFHPE~s~~~G~~iL~nfl~~ 209 (210)
T PRK14004 150 YFIHSYRPTG-AEGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSHTHGLKLLENFIEF 209 (210)
T ss_pred EEeceeecCC-CCcceEEEeeeECCEEEEEEEecCCEEEEeCCcccCchhHHHHHHHHHhh
Confidence 9999997633 45577777 554 66 4455544 999999998 67777 8898874
No 69
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.71 E-value=3.7e-17 Score=161.02 Aligned_cols=157 Identities=11% Similarity=0.019 Sum_probs=108.6
Q ss_pred ceeEeeccccH-------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc--hhhhhHH
Q 007779 49 IRLTVKADLDS-------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE--DEAFKVL 119 (590)
Q Consensus 49 ~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~--~~~g~~~ 119 (590)
+.|++....+- +.++++|.++.+++-+.. .. ++.+|+|||++||+.+.+. .+.+ ..
T Consensus 3 i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~--~~------------l~~~d~iii~GG~~~~~~~~~~~~~-~~ 67 (200)
T PRK13527 3 IGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP--GD------------LPDCDALIIPGGESTTIGRLMKREG-IL 67 (200)
T ss_pred EEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh--HH------------hccCCEEEECCCcHHHHHHHHhhcc-HH
Confidence 45556655554 455667888877765421 11 4467999999999886311 1222 46
Q ss_pred HHHHHHhcCCCCccc-ccchHHHHhHhCce-eeccCCCCcCcccc---------------------C--CceeEEeccch
Q 007779 120 DTILRSAKGDLKDEE-EVSKAQLGAFFSAM-TIRANAFPEATQWS---------------------E--GERRAMNTFWP 174 (590)
Q Consensus 120 ~~~i~~~~~~~PilG-CLGhQ~i~~~~G~~-v~~~~~~~~hG~~s---------------------~--~~~~~~~ryHs 174 (590)
+.|.+.+..++|+|| |+|||.|+.++|+. +.+. +.+++|... . ++++.+.+||+
T Consensus 68 ~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~-~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~H~ 146 (200)
T PRK13527 68 DEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKT-EQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGPFHAVFIRA 146 (200)
T ss_pred HHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCC-CCceeeeeEEEEeeccccCccccEEEeEeccccCCcceEEEEcc
Confidence 662333556799999 99999999999984 4343 444444221 1 23788999999
Q ss_pred hccccCCCcEEEEe-ecCCcEEEEEcC--CCCcccCCCchhhH-HHHHHHHh
Q 007779 175 LLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGNDPREMR-LVGALREV 222 (590)
Q Consensus 175 l~v~~~p~~l~v~a-~~~g~im~~~h~--~gvQfHPEs~~~m~-L~~~L~kl 222 (590)
+.|..+|++++++| ++|+ +||++.. ||+|||||-....+ +++||..+
T Consensus 147 ~~v~~lp~~~~~la~~~~~-~~a~~~~~~~g~QfHPE~~~~~~l~~~f~~~~ 197 (200)
T PRK13527 147 PAITKVGGDVEVLAKLDDR-IVAVEQGNVLATAFHPELTDDTRIHEYFLKKV 197 (200)
T ss_pred ccccccCCCeEEEEEECCE-EEEEEECCEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 99999999999999 6655 6788766 99999999744455 77777654
No 70
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.71 E-value=2.9e-17 Score=163.03 Aligned_cols=154 Identities=10% Similarity=0.051 Sum_probs=102.8
Q ss_pred ceeEeec----cccH--HHHHHhCC--ceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc----hhhh
Q 007779 49 IRLTVKA----DLDS--ALIDQLGL--KESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE----DEAF 116 (590)
Q Consensus 49 ~~~~~~~----~~d~--~~~~~lg~--~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~----~~~g 116 (590)
++|.+.| |+=| ++|+++|. ++.++++. ++ ++.+|+||| ||.|..... ...+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~----~~------------l~~~d~lIl-pG~~~~~~~~~~l~~~~ 64 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADP----DA------------VAAADRVVL-PGVGAFADCMRGLRAVG 64 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCH----HH------------hcCCCEEEE-CCCCcHHHHHHHHHHCC
Confidence 3556666 3444 89999999 55555432 21 456799999 886654310 1112
Q ss_pred hHHHHHHHHh-cCCCCccc-ccchHHHHhH------------hCceeeccC------CCCcCcccc----C------C--
Q 007779 117 KVLDTILRSA-KGDLKDEE-EVSKAQLGAF------------FSAMTIRAN------AFPEATQWS----E------G-- 164 (590)
Q Consensus 117 ~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~------------~G~~v~~~~------~~~~hG~~s----~------~-- 164 (590)
....+ ++.. ...+|+|| |+|+|.|+.+ ++++|.+.+ +.|+.|-.. + +
T Consensus 65 ~~~~~-~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~~~~lf~~~~ 143 (209)
T PRK13146 65 LGEAV-IEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTRDHPLFAGIP 143 (209)
T ss_pred cHHHH-HHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCCCChhccCCC
Confidence 22333 6654 36799999 9999999999 899999861 234555332 1 1
Q ss_pred ceeEEeccchhccccCCCcEEEEe-ecCC-cEEEEEcC---CCCcccCCC--chhhH-HHHHHHH
Q 007779 165 ERRAMNTFWPLLMRALPPDVIFIA-DPEG-SIMGGGGS---IGPHYSGND--PREMR-LVGALRE 221 (590)
Q Consensus 165 ~~~~~~ryHsl~v~~~p~~l~v~a-~~~g-~im~~~h~---~gvQfHPEs--~~~m~-L~~~L~k 221 (590)
+.+.+.+|||+.|...| ...++| ++++ .+++++.+ ||||||||+ +.|.. ++||++.
T Consensus 144 ~~~~v~~~Hs~~v~~~~-~~~~la~s~~~~~~~a~~~~~~i~GvQFHPE~s~~~G~~ll~nfl~~ 207 (209)
T PRK13146 144 DGARFYFVHSYYAQPAN-PADVVAWTDYGGPFTAAVARDNLFATQFHPEKSQDAGLALLRNFLAW 207 (209)
T ss_pred CCCEEEEEeEEEEEcCC-CCcEEEEEcCCCEEEEEEecCCEEEEEcCCcccHHHHHHHHHHHHhh
Confidence 35899999999997555 457777 6655 46776655 999999999 44555 7787754
No 71
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.69 E-value=6.2e-17 Score=163.46 Aligned_cols=145 Identities=10% Similarity=-0.029 Sum_probs=103.5
Q ss_pred eeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHH-
Q 007779 53 VKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRS- 125 (590)
Q Consensus 53 ~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~- 125 (590)
+.|+.|| ++..+++.++.++++|.-+..... . ...++.+|+||++|||+.|. ..+ ..++ ++.
T Consensus 12 ~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~----~--~~~l~~~dgivl~GG~~~~~---~~~-~~~~-i~~~ 80 (235)
T cd01746 12 LPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----A--EEALKGADGILVPGGFGIRG---VEG-KILA-IKYA 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccc----h--hhhhccCCEEEECCCCCCcc---hhh-HHHH-HHHH
Confidence 3455666 556667889999888754433210 0 01256789999999999998 333 3455 444
Q ss_pred hcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----------------------------------C-------
Q 007779 126 AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----------------------------------E------- 163 (590)
Q Consensus 126 ~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----------------------------------~------- 163 (590)
+..++|+|| |+|+|.|+.+||+.+.++ +...|.... .
T Consensus 81 ~~~~~PvlGIClG~Q~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~ 159 (235)
T cd01746 81 RENNIPFLGICLGMQLAVIEFARNVLGL-PDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKY 159 (235)
T ss_pred HHCCceEEEEEhHHHHHHHHHHHHhcCC-ccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHH
Confidence 456899999 999999999999999987 554322110 0
Q ss_pred -Cc-eeEEeccchhccc-----cC-CCcEEEEe-ec-CCcEEEEEcC----C-CCcccCCC
Q 007779 164 -GE-RRAMNTFWPLLMR-----AL-PPDVIFIA-DP-EGSIMGGGGS----I-GPHYSGND 209 (590)
Q Consensus 164 -~~-~~~~~ryHsl~v~-----~~-p~~l~v~a-~~-~g~im~~~h~----~-gvQfHPEs 209 (590)
|+ ...+..+|.+.|+ .+ .+.|++++ +. ||.|+|++++ | |||||||-
T Consensus 160 ~g~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~ 220 (235)
T cd01746 160 YGKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEF 220 (235)
T ss_pred hCCCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCC
Confidence 11 4677888999883 33 67899999 66 8999999987 4 99999996
No 72
>PRK05665 amidotransferase; Provisional
Probab=99.68 E-value=1.2e-15 Score=154.55 Aligned_cols=143 Identities=12% Similarity=-0.060 Sum_probs=106.9
Q ss_pred ccCCCeEEECCCCCCCCCchh-hhhHHHHHHHH-hcCCCCccc-ccchHHHHhHhCceeeccCCCC-cCcccc-----C-
Q 007779 94 LEAQAKVCTGPTQTRPLREDE-AFKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFP-EATQWS-----E- 163 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~-~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~-~hG~~s-----~- 163 (590)
++.+|+|||+.||.++.+... .....++ |+. +..++|+|| |+|||.|+.++||+|.+. +.+ ..|... +
T Consensus 55 ~~~~dgiiitGs~~~v~~~~pwi~~l~~~-i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~-~~G~e~G~~~~~~~~~~ 132 (240)
T PRK05665 55 DEKFDAYLVTGSKADSFGTDPWIQTLKTY-LLKLYERGDKLLGVCFGHQLLALLLGGKAERA-SQGWGVGIHRYQLAAHA 132 (240)
T ss_pred cccCCEEEECCCCCCccccchHHHHHHHH-HHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeC-CCCcccceEEEEecCCC
Confidence 557899999999999764322 2345566 555 445799999 999999999999999998 543 334321 1
Q ss_pred ------CceeEEeccchhccccCCCcEEEEe-ecCCcEEEEEcC---CCCcccCCCchhhHHHHHHHHhhcCCCCCHHHH
Q 007779 164 ------GERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGNDPREMRLVGALREVLAGGHLGYEEV 233 (590)
Q Consensus 164 ------~~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~---~gvQfHPEs~~~m~L~~~L~kl~~G~~Lt~eEa 233 (590)
.+.+.+..+|+..|..||++.+++| ++.+.++|++.. ||+|||||-...+ ++.+|+.- .+.++.+++
T Consensus 133 ~~~~~~~~~~~~~~~H~D~V~~LP~ga~~La~s~~~~~q~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~--~~~~~~~~~ 209 (240)
T PRK05665 133 PWMSPAVTELTLLISHQDQVTALPEGATVIASSDFCPFAAYHIGDQVLCFQGHPEFVHDY-SRALLDLR--QEHLGEEVY 209 (240)
T ss_pred ccccCCCCceEEEEEcCCeeeeCCCCcEEEEeCCCCcEEEEEeCCCEEEEecCCcCcHHH-HHHHHHHh--hhhcCHHHH
Confidence 2468888999999999999999999 777889999876 9999999975443 23333321 235788888
Q ss_pred HHHHHHhc
Q 007779 234 QGVLRDVL 241 (590)
Q Consensus 234 ~~a~~~Il 241 (590)
.+.+..+.
T Consensus 210 ~~~~~~l~ 217 (240)
T PRK05665 210 SKGVASLA 217 (240)
T ss_pred HHHHHHcC
Confidence 88887776
No 73
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.67 E-value=2.5e-16 Score=159.15 Aligned_cols=140 Identities=13% Similarity=-0.008 Sum_probs=103.8
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc-hhhh-----hHHHHHHHHh-cCCCCc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE-DEAF-----KVLDTILRSA-KGDLKD 132 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~-~~~g-----~~~~~~i~~~-~~~~Pi 132 (590)
.++++-|.++++++-.. .+ ..+. .++.+|+|||+.||.+|.+. ++.. ...++ |+.+ ..++|+
T Consensus 19 ~~~~~~g~~~~~~~~~~---g~---~~p~----~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~-i~~~~~~~~Pv 87 (235)
T PRK08250 19 KWAENRGYDISYSRVYA---GE---ALPE----NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRL-INQAIKAGKAV 87 (235)
T ss_pred HHHHHCCCeEEEEEccC---CC---CCCC----CccccCEEEECCCCCChhhccccccccchHHHHHH-HHHHHHcCCCE
Confidence 66777888888865321 10 1111 14568999999999998631 1221 23556 6654 457999
Q ss_pred cc-ccchHHHHhHhCceeeccCCCCcCcccc-----CC----------ceeEEeccchhccccCCCcEEEEe-ecCCcEE
Q 007779 133 EE-EVSKAQLGAFFSAMTIRANAFPEATQWS-----EG----------ERRAMNTFWPLLMRALPPDVIFIA-DPEGSIM 195 (590)
Q Consensus 133 lG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s-----~~----------~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im 195 (590)
|| |+|||.|+.+|||+|.+. +..++|... .| ..+.+.++|+..+ .+|++.+++| ++.+.++
T Consensus 88 lGIC~G~Qlla~alGg~V~~~-~~~e~G~~~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~-~lP~~a~~LA~s~~~~~q 165 (235)
T PRK08250 88 IGVCLGAQLIGEALGAKYEHS-PEKEIGYFPITLTEAGLKDPLLSHFGSTLTVGHWHNDMP-GLTDQAKVLATSEGCPRQ 165 (235)
T ss_pred EEEChhHHHHHHHhCceeccC-CCCceeEEEEEEccccccCchhhcCCCCcEEEEEeccee-cCCCCCEEEECCCCCCce
Confidence 99 999999999999999998 667777653 11 3688899999875 6999999999 7778899
Q ss_pred EEEcC---CCCcccCCCchh
Q 007779 196 GGGGS---IGPHYSGNDPRE 212 (590)
Q Consensus 196 ~~~h~---~gvQfHPEs~~~ 212 (590)
|++.. ||+|||||-...
T Consensus 166 a~~~~~~~~g~QfHPE~~~~ 185 (235)
T PRK08250 166 IVQYSNLVYGFQCHMEFTVE 185 (235)
T ss_pred EEEeCCCEEEEeecCcCCHH
Confidence 99986 999999997444
No 74
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.66 E-value=2.6e-16 Score=155.06 Aligned_cols=152 Identities=9% Similarity=0.016 Sum_probs=101.4
Q ss_pred eeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCC-chhhhhHHHHH
Q 007779 50 RLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLR-EDEAFKVLDTI 122 (590)
Q Consensus 50 ~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~-~~~~g~~~~~~ 122 (590)
++.++|+=+. .+++++|.++.+++++ .+ ++.+|+||| ||+|.|.+ .+......+.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~----~~------------~~~~d~iii-~G~~~~~~~~~~~~~~~~~- 63 (200)
T PRK13143 2 MIVIIDYGVGNLRSVSKALERAGAEVVITSDP----EE------------ILDADGIVL-PGVGAFGAAMENLSPLRDV- 63 (200)
T ss_pred eEEEEECCCccHHHHHHHHHHCCCeEEEECCH----HH------------HccCCEEEE-CCCCCHHHHHHHHHHHHHH-
Confidence 5667776655 6788899999988653 11 345699999 78776652 1222345666
Q ss_pred HHHh-cCCCCccc-ccchHHHHhH------------hCceeeccCCC----CcCcccc----CC-------ceeEEeccc
Q 007779 123 LRSA-KGDLKDEE-EVSKAQLGAF------------FSAMTIRANAF----PEATQWS----EG-------ERRAMNTFW 173 (590)
Q Consensus 123 i~~~-~~~~PilG-CLGhQ~i~~~------------~G~~v~~~~~~----~~hG~~s----~~-------~~~~~~ryH 173 (590)
++++ ..++|+|| |+|||.|+.+ +|++|.+. +. ++.|-.+ .+ ..+.+.+||
T Consensus 64 i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~-~~~~~~~~~g~~~v~~~~~~~l~~~l~~~~~~~~H 142 (200)
T PRK13143 64 ILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF-PAGVKVPHMGWNTVKVVKDCPLFEGIDGEYVYFVH 142 (200)
T ss_pred HHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc-CCCCCCCeecceEEEEcCCChhhccCCCcEEEEEe
Confidence 5654 45699999 9999999986 79999876 32 2223221 11 123467899
Q ss_pred hhccccCCCcEEEEe-ecCCcE-EEE-EcC--CCCcccCCC--chhhH-HHHHHHH
Q 007779 174 PLLMRALPPDVIFIA-DPEGSI-MGG-GGS--IGPHYSGND--PREMR-LVGALRE 221 (590)
Q Consensus 174 sl~v~~~p~~l~v~a-~~~g~i-m~~-~h~--~gvQfHPEs--~~~m~-L~~~L~k 221 (590)
|+.+. +|+.+++++ ++++.. ++. .+. ||+|||||. +.+.+ +++|++.
T Consensus 143 s~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~gvQfHPE~~~~~g~~i~~~f~~~ 197 (200)
T PRK13143 143 SYYAY-PDDEDYVVATTDYGIEFPAAVCNDNVFGTQFHPEKSGETGLKILENFVEL 197 (200)
T ss_pred eeeeC-CCCcceEEEEEcCCCEEEEEEEcCCEEEEeCCCccchHHHHHHHHHHHHH
Confidence 99885 455688888 666643 333 333 999999998 44545 7777754
No 75
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=99.66 E-value=1.8e-16 Score=129.36 Aligned_cols=64 Identities=27% Similarity=0.456 Sum_probs=54.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcC
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~ 285 (590)
++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||+++|+||||++||+||++||++++
T Consensus 2 ~~~~l~~l~~g~~Ls~~e~~~~~~~i~-------~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 2 IKEILKKLRDGEDLSREEAKAAFDAIL-------DGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHHH-------TTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999 9999999999999999999999999999999999875
No 76
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.56 E-value=4.6e-15 Score=153.06 Aligned_cols=139 Identities=10% Similarity=0.007 Sum_probs=91.3
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHHhc-----C-CCCcc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-----G-DLKDE 133 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~~-----~-~~Pil 133 (590)
.++++.|..|..++.|.- .++.. ..++..||||+..||-+.. ..+.......|++.+. | .+|++
T Consensus 27 ~~l~~aG~~vvpi~~~~~-~~~l~--------~~l~~~dG~l~~Gg~~~~~-~~~~~~~~~~l~~~a~~~~~~g~~~Pv~ 96 (273)
T cd01747 27 KFLESAGARVVPIWINES-EEYYD--------KLFKSINGILFPGGAVDID-TSGYARTAKIIYNLALERNDAGDYFPVW 96 (273)
T ss_pred HHHHHCCCeEEEEEeCCc-HHHHH--------HHHhhCCEEEECCCCCcCC-ccccchHHHHHHHHHHHhhhcCCCCcEE
Confidence 455666999998888731 22111 1255679999955553332 1122222222244432 1 38999
Q ss_pred c-ccchHHHHhHhCceeec-cCCCCcCcccc------CC------------------ceeEEeccchhccc--cCC----
Q 007779 134 E-EVSKAQLGAFFSAMTIR-ANAFPEATQWS------EG------------------ERRAMNTFWPLLMR--ALP---- 181 (590)
Q Consensus 134 G-CLGhQ~i~~~~G~~v~~-~~~~~~hG~~s------~~------------------~~~~~~ryHsl~v~--~~p---- 181 (590)
| |||+|.|+.++||++.. . +...||.+. ++ +...+.+|||+.|+ ++|
T Consensus 97 GiClG~QlL~~~~gg~~~~~~-~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~ 175 (273)
T cd01747 97 GTCLGFELLTYLTSGETLLLE-ATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGL 175 (273)
T ss_pred EEcHHHHHHHHHhCCCccccC-CCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccc
Confidence 9 99999999999998554 5 677888753 11 13356799999993 555
Q ss_pred --CcEEEEe-ecC--Cc--EEEEEcC----CCCcccCCC
Q 007779 182 --PDVIFIA-DPE--GS--IMGGGGS----IGPHYSGND 209 (590)
Q Consensus 182 --~~l~v~a-~~~--g~--im~~~h~----~gvQfHPEs 209 (590)
..+.+++ +.| |. ||+++|+ ||||||||.
T Consensus 176 l~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEk 214 (273)
T cd01747 176 LSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEK 214 (273)
T ss_pred cccceEEEEEEecCCCceEEEEEEecCCceEEEecCCCc
Confidence 4578888 433 43 7999998 999999997
No 77
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.53 E-value=3e-14 Score=139.45 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=103.0
Q ss_pred ccccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc-hhhhhHHHHHHHHh-cCCC
Q 007779 55 ADLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE-DEAFKVLDTILRSA-KGDL 130 (590)
Q Consensus 55 ~~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~-~~~g~~~~~~i~~~-~~~~ 130 (590)
-|++| ..++.+|.++..+.++ .. ++.+|+|||+.||+.-.+. .+.-...+. ++.+ ...+
T Consensus 11 g~~~~~~~~l~~~g~~~~~~~~~----~~------------l~~~dgiii~GG~~~~~~~~~~~~~~~~~-i~~~~~~g~ 73 (189)
T PRK13525 11 GAVREHLAALEALGAEAVEVRRP----ED------------LDEIDGLILPGGESTTMGKLLRDFGLLEP-LREFIASGL 73 (189)
T ss_pred cCHHHHHHHHHHCCCEEEEeCCh----hH------------hccCCEEEECCCChHHHHHHHHhccHHHH-HHHHHHCCC
Confidence 34444 4466778888777542 11 4567999999998653210 011123456 5554 4569
Q ss_pred Cccc-ccchHHHHhHhCc-----------eeeccCCCC-cCcccc-----C--CceeEEeccchhccccCCCcEEEEeec
Q 007779 131 KDEE-EVSKAQLGAFFSA-----------MTIRANAFP-EATQWS-----E--GERRAMNTFWPLLMRALPPDVIFIADP 190 (590)
Q Consensus 131 PilG-CLGhQ~i~~~~G~-----------~v~~~~~~~-~hG~~s-----~--~~~~~~~ryHsl~v~~~p~~l~v~a~~ 190 (590)
|++| |.|+|.|+.++|+ +|.+. +.+ ..|... + ++.+.+...|+..|..+|++++++|.+
T Consensus 74 PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~-~~g~~~g~~~~~~~~~~~~~~~~~~~~H~d~v~~lp~~~~vlA~~ 152 (189)
T PRK13525 74 PVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRN-AFGRQVDSFEAELDIKGLGEPFPAVFIRAPYIEEVGPGVEVLATV 152 (189)
T ss_pred eEEEECHHHHHHHhhcccCCCCceeeEEEEEEEc-cCCCceeeEEecccccCCCCCeEEEEEeCceeeccCCCcEEEEEc
Confidence 9999 9999999999999 67665 332 333221 1 237899999999999999999999944
Q ss_pred CCcEEEEEcC--CCCcccCCCchhhH-HHHHHHHh
Q 007779 191 EGSIMGGGGS--IGPHYSGNDPREMR-LVGALREV 222 (590)
Q Consensus 191 ~g~im~~~h~--~gvQfHPEs~~~m~-L~~~L~kl 222 (590)
++.+.+++.+ ||+|||||-....+ +++|++.+
T Consensus 153 ~~~~~~~~~~~~~g~QfHPE~~~~~~~~~~f~~~~ 187 (189)
T PRK13525 153 GGRIVAVRQGNILATSFHPELTDDTRVHRYFLEMV 187 (189)
T ss_pred CCEEEEEEeCCEEEEEeCCccCCCchHHHHHHHHh
Confidence 4555567766 99999999866666 78887543
No 78
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.51 E-value=5.9e-14 Score=137.53 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=93.8
Q ss_pred cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhh------HHHHHHHHhc
Q 007779 56 DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFK------VLDTILRSAK 127 (590)
Q Consensus 56 ~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~------~~~~~i~~~~ 127 (590)
|+-| ++|+.+|.++.++++++ + ++.+|+| |.||+|+|. ++.. ..+. |++ .
T Consensus 11 N~~s~~~al~~~g~~~~~v~~~~----~------------l~~~D~l-IlPG~g~~~---~~~~~L~~~gl~~~-i~~-~ 68 (192)
T PRK13142 11 NISNVKRAIEHLGYEVVVSNTSK----I------------IDQAETI-ILPGVGHFK---DAMSEIKRLNLNAI-LAK-N 68 (192)
T ss_pred cHHHHHHHHHHcCCCEEEEeCHH----H------------hccCCEE-EECCCCCHH---HHHHHHHHCCcHHH-HHH-h
Confidence 6666 78999999999998762 1 2345778 669999987 4432 3566 665 4
Q ss_pred CCCCccc-ccchHHHHhHh--C---------ceeeccC---CCCcCccccCC-cee-----EEeccchhccccCCCcEEE
Q 007779 128 GDLKDEE-EVSKAQLGAFF--S---------AMTIRAN---AFPEATQWSEG-ERR-----AMNTFWPLLMRALPPDVIF 186 (590)
Q Consensus 128 ~~~PilG-CLGhQ~i~~~~--G---------~~v~~~~---~~~~hG~~s~~-~~~-----~~~ryHsl~v~~~p~~l~v 186 (590)
.++|+|| |+|||.|++.- | ++|.|.+ +.|+-| |..- ... .+...||+.+. .++...+
T Consensus 69 ~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~G-Wn~~~~~~~l~~~~~yFVhSy~v~-~~~~v~~ 146 (192)
T PRK13142 69 TDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLG-WNNLVSKHPMLNQDVYFVHSYQAP-MSENVIA 146 (192)
T ss_pred CCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCccc-ccccCCCCcccccEEEEECCCeEC-CCCCEEE
Confidence 5799999 99999999887 3 4455552 112222 2210 122 26778999994 3455555
Q ss_pred EeecCC-cEEEEEcC--CCCcccCCC--chhhH-HHHHHH
Q 007779 187 IADPEG-SIMGGGGS--IGPHYSGND--PREMR-LVGALR 220 (590)
Q Consensus 187 ~a~~~g-~im~~~h~--~gvQfHPEs--~~~m~-L~~~L~ 220 (590)
++.-++ .+-++++. ||+|||||- ..|.. |++|+.
T Consensus 147 ~~~yg~~~~~~v~~~n~~g~QFHPEkS~~~G~~ll~nf~~ 186 (192)
T PRK13142 147 YAQYGADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQ 186 (192)
T ss_pred EEECCCeEEEEEEcCCEEEEecCcccCcHhHHHHHHHHHh
Confidence 553334 46666655 999999997 67777 777764
No 79
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.47 E-value=2.5e-13 Score=151.66 Aligned_cols=157 Identities=12% Similarity=0.034 Sum_probs=105.7
Q ss_pred cceeEeec----cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc----hhhhh
Q 007779 48 RIRLTVKA----DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE----DEAFK 117 (590)
Q Consensus 48 ~~~~~~~~----~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~----~~~g~ 117 (590)
..+|.+.| |+-| +.++.+|.++.+++++. + ++.+|+||| ||+|++... .+.+
T Consensus 6 ~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~~~----~------------l~~~D~lIl-pG~gs~~~~m~~L~~~g- 67 (538)
T PLN02617 6 DSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPE----D------------ILNADRLIF-PGVGAFGSAMDVLNNRG- 67 (538)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHCCCeEEEECChh----h------------hccCCEEEE-CCCCCHHHHHHHHHHcC-
Confidence 44678888 6777 88999999998886421 1 345688988 999987621 0011
Q ss_pred HHHHHHHH-hcCCCCccc-ccchHHHHhHh---------C---ceeeccC-----CCCcCcccc----CC-------cee
Q 007779 118 VLDTILRS-AKGDLKDEE-EVSKAQLGAFF---------S---AMTIRAN-----AFPEATQWS----EG-------ERR 167 (590)
Q Consensus 118 ~~~~~i~~-~~~~~PilG-CLGhQ~i~~~~---------G---~~v~~~~-----~~~~hG~~s----~~-------~~~ 167 (590)
..+. |+. +...+|+|| |+|+|.|+.++ | |.|.+.+ +.|++|-+. .+ ..+
T Consensus 68 l~~~-i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~~spL~~~l~~~ 146 (538)
T PLN02617 68 MAEA-LREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITKDSELLDGVGGR 146 (538)
T ss_pred HHHH-HHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecCCChhHhcCCCc
Confidence 3445 444 445799999 99999999874 2 5665531 345666443 11 134
Q ss_pred EEeccchhccccCCCc-EEEEe---ecCCcEEEEEcC--CCCcccCCC--chhhH-HHHHHHHhh
Q 007779 168 AMNTFWPLLMRALPPD-VIFIA---DPEGSIMGGGGS--IGPHYSGND--PREMR-LVGALREVL 223 (590)
Q Consensus 168 ~~~ryHsl~v~~~p~~-l~v~a---~~~g~im~~~h~--~gvQfHPEs--~~~m~-L~~~L~kl~ 223 (590)
.+.++||+.+..+|.. ..+.+ ..++.|+|+++. ||+|||||. +.|.+ +++|++.+.
T Consensus 147 ~vy~vHSy~v~~~p~~~~~v~a~~~~g~~~IaAI~~gnI~GVQFHPE~s~~~G~~L~~nFl~~~~ 211 (538)
T PLN02617 147 HVYFVHSYRATPSDENKDWVLATCNYGGEFIASVRKGNVHAVQFHPEKSGATGLSILRRFLEPKS 211 (538)
T ss_pred EEEEEeEEEEEecCCCCcEEEEEEccCCCcEEEEEeCCEEEEEcCCccCchhHHHHHHHHHHhhh
Confidence 5778999998666543 22333 235689999998 999999997 45655 788877664
No 80
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.43 E-value=2.4e-13 Score=149.79 Aligned_cols=110 Identities=8% Similarity=-0.030 Sum_probs=82.8
Q ss_pred ccCCCeEEECCCCCCCCCchhhhhHHHHHHHHhc-CCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc---------
Q 007779 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS--------- 162 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~~-~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s--------- 162 (590)
++.+|+|+++||||+|. ..|. ++. ++.+. .++|+|| |||||.|+.+||+.|.++ +..+|....
T Consensus 341 L~~~dGIiLpGG~G~~~---~~g~-i~a-i~~a~e~~iP~LGIClG~Qll~i~~grnv~gl-~~A~s~Ef~~~~~~pVi~ 414 (525)
T TIGR00337 341 LKGVDGILVPGGFGERG---VEGK-ILA-IKYARENNIPFLGICLGMQLAVIEFARNVLGL-KGANSTEFDPETKYPVVD 414 (525)
T ss_pred hcCCCEEEeCCCCCChh---hcCh-HHH-HHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCC-CCCCccccCCCCCCCeee
Confidence 66789999999999997 4454 345 56544 6799999 999999999999999998 666662211
Q ss_pred --C-------------------------------Cc-eeEEeccchhcccc-----C-CCcEEEEe-ecC-CcEEEEEcC
Q 007779 163 --E-------------------------------GE-RRAMNTFWPLLMRA-----L-PPDVIFIA-DPE-GSIMGGGGS 200 (590)
Q Consensus 163 --~-------------------------------~~-~~~~~ryHsl~v~~-----~-p~~l~v~a-~~~-g~im~~~h~ 200 (590)
+ |+ .+...+.|.+.|++ + .+.|+++| ++| |.|+|++++
T Consensus 415 l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~ 494 (525)
T TIGR00337 415 LLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELP 494 (525)
T ss_pred ccCcccccccCCceeeccceEEEECCCChHHHHhCCCceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEEC
Confidence 0 00 22445678888842 2 36799999 777 589999976
Q ss_pred -----CCCcccCCC
Q 007779 201 -----IGPHYSGND 209 (590)
Q Consensus 201 -----~gvQfHPEs 209 (590)
.|||||||-
T Consensus 495 ~hpfflGVQwHPE~ 508 (525)
T TIGR00337 495 DHPFFVACQFHPEF 508 (525)
T ss_pred CCCeEEEEecCCCC
Confidence 599999996
No 81
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.37 E-value=1.4e-12 Score=126.99 Aligned_cols=140 Identities=13% Similarity=0.168 Sum_probs=98.0
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc--hhhhhHHHHHHHHhcCCCCccc-cc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE--DEAFKVLDTILRSAKGDLKDEE-EV 136 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~--~~~g~~~~~~i~~~~~~~PilG-CL 136 (590)
..++++|+++.+++... . ++.+|+||++.|+-.-.+. .+. ...+.|.+.+...+|+|| |.
T Consensus 15 ~~l~~~g~~v~~v~~~~----~------------l~~~dgiii~Gg~~~~~~~~~~~~-~~~~~i~~~~~~g~PvlGiC~ 77 (183)
T cd01749 15 RALERLGVEVIEVRTPE----D------------LEGIDGLIIPGGESTTIGKLLRRT-GLLDPLREFIRAGKPVFGTCA 77 (183)
T ss_pred HHHHHCCCeEEEECCHH----H------------hccCCEEEECCchHHHHHHHHHhC-CHHHHHHHHHHcCCeEEEECH
Confidence 67889999999887631 1 4466999999987532210 011 234552334456799999 99
Q ss_pred chHHHHhHhCc------------eeeccCCCC-cCccc----c---CC-ceeEEeccchhccccCCCcEEEEeecCCcEE
Q 007779 137 SKAQLGAFFSA------------MTIRANAFP-EATQW----S---EG-ERRAMNTFWPLLMRALPPDVIFIADPEGSIM 195 (590)
Q Consensus 137 GhQ~i~~~~G~------------~v~~~~~~~-~hG~~----s---~~-~~~~~~ryHsl~v~~~p~~l~v~a~~~g~im 195 (590)
|+|.|+.++|+ +|.|. +++ .-|.. . .+ +++.+...|...|..+|++++++|..|+.+.
T Consensus 78 G~qlL~~~~~~~~~~~glG~~~~~v~~~-~~g~~~g~~~~~l~~~~~~~~~~~~~~~h~~~v~~~p~~~~~la~~~~~~~ 156 (183)
T cd01749 78 GLILLAKEVEDQGGQPLLGLLDITVRRN-AFGRQVDSFEADLDIPGLGLGPFPAVFIRAPVIEEVGPGVEVLAEYDGKIV 156 (183)
T ss_pred HHHHHHHHhcccCCCCccCceeEEEEee-ccccccceEEEcCCCCcCCCCccEEEEEECcEEEEcCCCcEEEEecCCEEE
Confidence 99999999998 78775 332 11211 1 12 4788899999999999999999995456656
Q ss_pred EEEcC--CCCcccCCCchhhHHHH
Q 007779 196 GGGGS--IGPHYSGNDPREMRLVG 217 (590)
Q Consensus 196 ~~~h~--~gvQfHPEs~~~m~L~~ 217 (590)
+++.+ ||+|||||-....++.+
T Consensus 157 a~~~~~~~g~qfHPE~~~~~~~~~ 180 (183)
T cd01749 157 AVRQGNVLATSFHPELTDDTRIHE 180 (183)
T ss_pred EEEECCEEEEEcCCccCCCcchhh
Confidence 78776 99999999765555433
No 82
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.36 E-value=2.2e-12 Score=125.90 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=95.2
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCC-chhhhhHHHHHHHH-hcCCCCccc-cc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLR-EDEAFKVLDTILRS-AKGDLKDEE-EV 136 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~-~~~~g~~~~~~i~~-~~~~~PilG-CL 136 (590)
+.|+++|.++.+++.++ + ++.+|+|||..|++.-.. ..+.-...+. |++ ....+|++| |.
T Consensus 16 ~~l~~~g~~~~~v~~~~----~------------l~~~d~liipGG~~~~~~~l~~~~~l~~~-i~~~~~~g~pilGIC~ 78 (184)
T TIGR03800 16 RALEALGVEGVEVKRPE----Q------------LDEIDGLIIPGGESTTLSRLLDKYGMFEP-LRNFILSGLPVFGTCA 78 (184)
T ss_pred HHHHHCCCEEEEECChH----H------------hccCCEEEECCCCHHHHHHHHHhccHHHH-HHHHHHcCCcEEEECH
Confidence 67889999998886632 1 345689999988765421 0011123455 554 455799999 99
Q ss_pred chHHHHhHh-----------CceeeccCCCCc-----CccccC-C--c-eeEEeccchhccccCCCcEEEEeecCCcEEE
Q 007779 137 SKAQLGAFF-----------SAMTIRANAFPE-----ATQWSE-G--E-RRAMNTFWPLLMRALPPDVIFIADPEGSIMG 196 (590)
Q Consensus 137 GhQ~i~~~~-----------G~~v~~~~~~~~-----hG~~s~-~--~-~~~~~ryHsl~v~~~p~~l~v~a~~~g~im~ 196 (590)
|+|.|++.+ +++|.|. ++.. |-.+.. + + ++.+.-.|.-.|..+|++++++|..++.+.|
T Consensus 79 G~qlL~~~~~~~~~~~lg~~~~~v~~~-~~g~~~~s~~~~l~~~~~~~~~~~~~~~h~~~v~~lp~~~~vla~~~~~~~a 157 (184)
T TIGR03800 79 GLIMLAKEIIGQKEGYLGLLDMTVERN-AYGRQVDSFEAEVDIKGVGDDPITGVFIRAPKIVSVGNGVEILAKVGNRIVA 157 (184)
T ss_pred HHHHHHhhhccCCCCccCcEEEEEEee-ccCCccccEEEEeecccCCCCcceEEEEcCCCcccCCCCeEEEEEeCCeeEE
Confidence 999999998 2577665 4321 111111 1 1 4677778999998999999999955567778
Q ss_pred EEcC--CCCcccCCCchhhHH
Q 007779 197 GGGS--IGPHYSGNDPREMRL 215 (590)
Q Consensus 197 ~~h~--~gvQfHPEs~~~m~L 215 (590)
++.+ ||+|||||-....++
T Consensus 158 ~~~~~~~gvQfHPE~~~~~~~ 178 (184)
T TIGR03800 158 VRQGNILVSSFHPELTDDHRV 178 (184)
T ss_pred EEeCCEEEEEeCCccCCCchH
Confidence 8877 999999997555553
No 83
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.32 E-value=2e-12 Score=129.29 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=87.6
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCC--C-------CCc----hhhhh--HHHHHHH
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTR--P-------LRE----DEAFK--VLDTILR 124 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~--P-------~~~----~~~g~--~~~~~i~ 124 (590)
.++++.|..+..+..+. +.++.. ..++..|||+|+.|+-+ | ... +..-. -+.+ ++
T Consensus 31 ~~i~~aG~~pv~ip~~~-~~~~~~--------~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l-~~ 100 (217)
T PF07722_consen 31 KAIEAAGGRPVPIPYDA-DDEELD--------ELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELAL-IR 100 (217)
T ss_dssp HHHHHTT-EEEEE-SS---HHHHH--------HHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHH-HH
T ss_pred HHHHHcCCEEEEEccCC-CHHHHH--------HHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHH-HH
Confidence 45666799888888874 222211 23666799999999841 1 100 00011 1223 44
Q ss_pred Hh-cCCCCccc-ccchHHHHhHhCceeeccCCC----CcCcc---c--c------C--------C-ceeEEeccchhccc
Q 007779 125 SA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAF----PEATQ---W--S------E--------G-ERRAMNTFWPLLMR 178 (590)
Q Consensus 125 ~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~----~~hG~---~--s------~--------~-~~~~~~ryHsl~v~ 178 (590)
.. ...+|||| |.|+|.|..+|||++..-.+. ..|-+ . + . + +.+.+..||...|+
T Consensus 101 ~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~~~~~~vns~Hhq~v~ 180 (217)
T PF07722_consen 101 NALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVPGSLLAKILGSEEIEVNSFHHQAVK 180 (217)
T ss_dssp HHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEETTSTCCCTSHHCTEEEEEEECEEEC
T ss_pred HHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceeccCchHHHHhCcCcceeecchhhhhh
Confidence 43 34699999 999999999999999864222 11211 0 0 1 1 37889999999999
Q ss_pred cCCCcEEEEe-ecCCcEEEEEcC------CCCcccCC
Q 007779 179 ALPPDVIFIA-DPEGSIMGGGGS------IGPHYSGN 208 (590)
Q Consensus 179 ~~p~~l~v~a-~~~g~im~~~h~------~gvQfHPE 208 (590)
.+.+.|+++| +.||.|+|+.+. +|||||||
T Consensus 181 ~l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 181 PLGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp CHHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred ccCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 9999999999 889999999886 99999999
No 84
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.28 E-value=1.3e-11 Score=136.27 Aligned_cols=148 Identities=12% Similarity=0.029 Sum_probs=93.2
Q ss_pred hCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHH
Q 007779 65 LGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLG 142 (590)
Q Consensus 65 lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~ 142 (590)
++.++.+...|+..++..+ ....++.+|+||+++|||.+. ..| .+++ ++.+ ..++|+|| |+|+|.|+
T Consensus 318 ~~~~v~i~wIdse~l~~~~------~~~~L~~~DGIIlpGGfG~~~---~~g-~i~~-i~~a~e~~iPiLGIClGmQll~ 386 (533)
T PRK05380 318 NDVKVNIKWIDSEDLEEEN------VAELLKGVDGILVPGGFGERG---IEG-KILA-IRYARENNIPFLGICLGMQLAV 386 (533)
T ss_pred cCCeeEEEEEChhhccCcc------hhhHhhcCCEEEecCCCCccc---ccc-HHHH-HHHHHHCCCcEEEEchHHHHHH
Confidence 4678888888865554210 012266789999999999976 334 3455 5554 45799999 99999999
Q ss_pred hHhCceeec---cC--CCC-----------cC-------ccc-----c-----C--------Cc-eeEEeccchhcccc-
Q 007779 143 AFFSAMTIR---AN--AFP-----------EA-------TQW-----S-----E--------GE-RRAMNTFWPLLMRA- 179 (590)
Q Consensus 143 ~~~G~~v~~---~~--~~~-----------~h-------G~~-----s-----~--------~~-~~~~~ryHsl~v~~- 179 (590)
.+||+.+.. ++ .+. .| |.+ . . |+ .+.-..-|.+.|++
T Consensus 387 va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~gS~l~~iyg~~~i~ErhrHryeVNs~ 466 (533)
T PRK05380 387 IEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYEVNNK 466 (533)
T ss_pred HHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCCChHHHHhCCCceeeecccceecCHH
Confidence 999999842 21 000 01 100 0 0 11 12222345666632
Q ss_pred ----C-CCcEEEEe-ecC-CcEEEEEcC-----CCCcccCCC---c-hhhH-HHHHHHHhh
Q 007779 180 ----L-PPDVIFIA-DPE-GSIMGGGGS-----IGPHYSGND---P-REMR-LVGALREVL 223 (590)
Q Consensus 180 ----~-p~~l~v~a-~~~-g~im~~~h~-----~gvQfHPEs---~-~~m~-L~~~L~kl~ 223 (590)
+ ...|+++| ++| |.|+|+.++ .|||||||- + .... +..|++...
T Consensus 467 h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~ 527 (533)
T PRK05380 467 YREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAAL 527 (533)
T ss_pred HHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHH
Confidence 3 23799999 766 489999976 599999995 2 2223 677766553
No 85
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.26 E-value=1.6e-11 Score=119.64 Aligned_cols=149 Identities=12% Similarity=0.092 Sum_probs=92.4
Q ss_pred ccccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCC-Cchhhh--hHHHHHHHHhcCC
Q 007779 55 ADLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPL-REDEAF--KVLDTILRSAKGD 129 (590)
Q Consensus 55 ~~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~-~~~~~g--~~~~~~i~~~~~~ 129 (590)
.||-| .-|+.+|.++.|.++.+. ++..|+||+ ||=|+=. ..+... ...+.|.+....+
T Consensus 12 GNL~Sv~~Aler~G~~~~vs~d~~~----------------i~~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~~ 74 (204)
T COG0118 12 GNLRSVKKALERLGAEVVVSRDPEE----------------ILKADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVESG 74 (204)
T ss_pred chHHHHHHHHHHcCCeeEEecCHHH----------------HhhCCEEEe-cCCCCHHHHHHHHHhcchHHHHHHHHhcC
Confidence 36666 678999999988877532 223377766 8988833 111111 2355623334456
Q ss_pred CCccc-ccchHHHHhH------------hCceeeccCC----CCcCcccc----C------C----ceeEEeccchhccc
Q 007779 130 LKDEE-EVSKAQLGAF------------FSAMTIRANA----FPEATQWS----E------G----ERRAMNTFWPLLMR 178 (590)
Q Consensus 130 ~PilG-CLGhQ~i~~~------------~G~~v~~~~~----~~~hG~~s----~------~----~~~~~~ryHsl~v~ 178 (590)
+|+|| |||+|+|.+. +.|+|.|.++ .||-|=++ + | ..|- --|||.+.
T Consensus 75 kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~~~~Y--FVHSY~~~ 152 (204)
T COG0118 75 KPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDGAYFY--FVHSYYVP 152 (204)
T ss_pred CCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccCCChhhcCCCCCCEEE--EEEEEeec
Confidence 99999 9999999763 3467887742 35555332 1 1 2333 34999997
Q ss_pred cCCCcEEEEeecCC-cEEEEEcC---CCCcccCCC--chhhH-HHHHHHHh
Q 007779 179 ALPPDVIFIADPEG-SIMGGGGS---IGPHYSGND--PREMR-LVGALREV 222 (590)
Q Consensus 179 ~~p~~l~v~a~~~g-~im~~~h~---~gvQfHPEs--~~~m~-L~~~L~kl 222 (590)
...++-.+..++=| .+-|+-.+ +|+|||||- ..|++ |+||++.+
T Consensus 153 ~~~~~~v~~~~~YG~~f~AaV~k~N~~g~QFHPEKSg~~Gl~lL~NFl~~~ 203 (204)
T COG0118 153 PGNPETVVATTDYGEPFPAAVAKDNVFGTQFHPEKSGKAGLKLLKNFLEWI 203 (204)
T ss_pred CCCCceEEEeccCCCeeEEEEEeCCEEEEecCcccchHHHHHHHHHHHhhc
Confidence 54444433333333 44444443 999999995 77888 99998753
No 86
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.21 E-value=4.4e-11 Score=127.11 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=113.5
Q ss_pred CCCeEEECCCCCCCCCchhhhhHHHHHHHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------------
Q 007779 96 AQAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------------ 162 (590)
Q Consensus 96 ~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------------ 162 (590)
.|-+||||.||-.-- ++||...-..|++ + .+|+|| |-|+|.|+..|||.|.+- ..-.-|...
T Consensus 59 ~~rgiIiSGGP~SVy-a~dAP~~dp~if~-~--~vpvLGICYGmQ~i~~~~Gg~V~~~-~~RE~G~~eI~v~~~~~lF~~ 133 (552)
T KOG1622|consen 59 GPRGIIISGGPNSVY-AEDAPSFDPAIFE-L--GVPVLGICYGMQLINKLNGGTVVKG-MVREDGEDEIEVDDSVDLFSG 133 (552)
T ss_pred CceEEEEeCCCCccc-cCcCCCCChhHhc-c--CCcceeehhHHHHHHHHhCCccccc-cccCCCCceEEcCchhhhhhh
Confidence 568999999997632 2245443333132 2 699999 999999999999999986 444556543
Q ss_pred --CCceeEEeccchhccccCCCcEEEEe-ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhhcC-CCCC-
Q 007779 163 --EGERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLAG-GHLG- 229 (590)
Q Consensus 163 --~~~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~~G-~~Lt- 229 (590)
..+...|+--||+.+..+|.+|+|.+ +.+..+-|+.|. ||+|||||. +.|+. ++||+-++..+ .+.|
T Consensus 134 ~~~~~~~~VlltHgdsl~~v~~g~kv~a~s~n~~va~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tm 213 (552)
T KOG1622|consen 134 LHKTEFMTVLLTHGDSLSKVPEGFKVVAFSGNKPVAGILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTM 213 (552)
T ss_pred hcccceeeeeeccccchhhccccceeEEeecCcceeeehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcch
Confidence 12244688899999999999999999 555558888887 999999997 67777 99999777655 3555
Q ss_pred ----HHHHHHHHHHhcCCcc-CCCCCCCCHHHHHHHHHHH
Q 007779 230 ----YEEVQGVLRDVLPLQV-DNKAPGVSESLLSAFLIGQ 264 (590)
Q Consensus 230 ----~eEa~~a~~~Il~~~~-~~~~g~~sd~qigAFL~al 264 (590)
.++.++.-+.+-+-.+ ---+|.++-.-.+++|...
T Consensus 214 enre~e~I~~i~k~vG~~~Vl~~vSGgvdStV~a~Ll~~a 253 (552)
T KOG1622|consen 214 ENREEECINEIRKWVGDYKVLVAVSGGVDSTVCAALLRRA 253 (552)
T ss_pred hhhhHHHHHHHHHHhcccceEEEecCCchHHHHHHHHHHh
Confidence 3444444443321000 0015777777777766544
No 87
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.20 E-value=1.6e-10 Score=112.03 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=108.2
Q ss_pred ccCCCeEEECCCCCCCCCchh-hhhHHHHHHHHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCcCc--ccc------
Q 007779 94 LEAQAKVCTGPTQTRPLREDE-AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEAT--QWS------ 162 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~-~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG--~~s------ 162 (590)
++.|+|+|||.-+-+--.+.+ .-+..++ ++.+ .-++||+| |.|||+|+.+-|++|.|+++-|.-| .+.
T Consensus 57 l~ky~gfvIsGS~~dAf~d~dWI~KLcs~-~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~ 135 (245)
T KOG3179|consen 57 LEKYDGFVISGSKHDAFSDADWIKKLCSF-VKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAE 135 (245)
T ss_pred hhhhceEEEeCCcccccccchHHHHHHHH-HHHHHhhccceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecc
Confidence 778999999966544322222 2344555 4443 23699999 9999999999999999994443323 221
Q ss_pred C-----C---ceeEEeccchhccccCCCcEEEEe-ecCCcEEEEEcC---CCCcccCCCchhhHHHHHHHHhhcCCCCCH
Q 007779 163 E-----G---ERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGNDPREMRLVGALREVLAGGHLGY 230 (590)
Q Consensus 163 ~-----~---~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~---~gvQfHPEs~~~m~L~~~L~kl~~G~~Lt~ 230 (590)
. | +.+....-|+..|-.+|+..+++| +++.+++.+.-. +++|=|||=..+. +-+.+.++...+..++
T Consensus 136 ~~~~yFG~~~~~l~IikcHqDevle~PE~a~llasSe~ceve~fs~~~~~l~fQGHPEyn~ei-l~~ivdrv~~~k~~~e 214 (245)
T KOG3179|consen 136 KPEKYFGEIPKSLNIIKCHQDEVLELPEGAELLASSEKCEVEMFSIEDHLLCFQGHPEYNKEI-LFEIVDRVLGTKLVEE 214 (245)
T ss_pred cchhhcccchhhhhHHhhcccceecCCchhhhhccccccceEEEEecceEEEecCCchhhHHH-HHHHHHHHhcchhhHH
Confidence 1 3 257778899999989999999999 888888877655 9999999953332 4456666666565555
Q ss_pred HHHHHHHHHhcCCccCCCCCCCCHHHHHHHH
Q 007779 231 EEVQGVLRDVLPLQVDNKAPGVSESLLSAFL 261 (590)
Q Consensus 231 eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL 261 (590)
+-++.+-..+ ....++.|++--+
T Consensus 215 ef~~~ak~~~--------En~~~d~~~~~~i 237 (245)
T KOG3179|consen 215 EFAEKAKKTM--------ENPEPDRQLAVSI 237 (245)
T ss_pred HHHHHHHHhh--------hCCCccHHHHHHH
Confidence 5555555444 3555666765444
No 88
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.16 E-value=5.5e-11 Score=118.76 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=83.1
Q ss_pred ccCCCeEEECCCCCC--C-------C------C-chhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhHhCceeeccCC-
Q 007779 94 LEAQAKVCTGPTQTR--P-------L------R-EDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANA- 154 (590)
Q Consensus 94 ~~~~~~ivlspGPg~--P-------~------~-~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~- 154 (590)
++.-|+|||+.| .+ | . + +.|+ -.+.+ ||. +..++|||| |=|.|.|.-+|||.+++=-+
T Consensus 58 l~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~-~E~aL-i~~ALe~~iPILgICRG~QllNVa~GGtL~q~i~~ 134 (243)
T COG2071 58 LDLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDA-FELAL-IRAALERGIPILGICRGLQLLNVALGGTLYQDISE 134 (243)
T ss_pred HhhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccH-HHHHH-HHHHHHcCCCEEEEccchHHHHHHhcCeeehhhhc
Confidence 455699999998 22 2 1 0 0122 23556 554 566899999 99999999999999975311
Q ss_pred CC---cCcccc------------C--------Cce-eEEeccchhccccCCCcEEEEe-ecCCcEEEEEcC-----CCCc
Q 007779 155 FP---EATQWS------------E--------GER-RAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS-----IGPH 204 (590)
Q Consensus 155 ~~---~hG~~s------------~--------~~~-~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~-----~gvQ 204 (590)
.+ -|=+.. . |+. +.+..||--.++.|-++|+|+| ++||.|+|+.++ .|||
T Consensus 135 ~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~~~~~VNS~HhQaIk~La~~L~V~A~a~DG~VEAie~~~~~fvlGVQ 214 (243)
T COG2071 135 QPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGESEFMVNSFHHQAIKKLAPGLVVEARAPDGTVEAVEVKNDAFVLGVQ 214 (243)
T ss_pred ccccccccCCCCcccceeEEEecCCccHHHhcCccceeecchHHHHHHHhCCCcEEEEECCCCcEEEEEecCCceEEEEe
Confidence 11 222111 1 334 8889999999999999999999 899999999998 8999
Q ss_pred ccCCC
Q 007779 205 YSGND 209 (590)
Q Consensus 205 fHPEs 209 (590)
||||-
T Consensus 215 WHPE~ 219 (243)
T COG2071 215 WHPEY 219 (243)
T ss_pred cChhh
Confidence 99996
No 89
>PLN02327 CTP synthase
Probab=99.14 E-value=1.1e-10 Score=129.31 Aligned_cols=124 Identities=10% Similarity=0.049 Sum_probs=83.4
Q ss_pred ccCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc---------
Q 007779 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS--------- 162 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s--------- 162 (590)
+..+|+||+++|||++. ..|.. .. ++.+ ..++|+|| |||||.++..||..|... +.-.+....
T Consensus 360 L~~~DGIvvpGGfG~~~---~~G~i-~a-i~~are~~iP~LGIClGmQl~viefaRnvlG~-~dAnS~Efdp~t~~pvI~ 433 (557)
T PLN02327 360 LKGADGILVPGGFGDRG---VEGKI-LA-AKYARENKVPYLGICLGMQIAVIEFARSVLGL-KDANSTEFDPETPNPCVI 433 (557)
T ss_pred hccCCEEEeCCCCCCcc---cccHH-HH-HHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC-cCCCccccCCCCCCCEEE
Confidence 66789999999999987 45553 44 4544 35799999 999999999999987664 322222110
Q ss_pred --------C-------------------------Cce--eEEeccchhccc-----cC-CCcEEEEe-ecCC-cEEEEEc
Q 007779 163 --------E-------------------------GER--RAMNTFWPLLMR-----AL-PPDVIFIA-DPEG-SIMGGGG 199 (590)
Q Consensus 163 --------~-------------------------~~~--~~~~ryHsl~v~-----~~-p~~l~v~a-~~~g-~im~~~h 199 (590)
+ |+. +...+-|.|.|+ .+ -++|.+++ ++|| .|+++.+
T Consensus 434 ~m~e~~~~~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~ 513 (557)
T PLN02327 434 FMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVEL 513 (557)
T ss_pred EehhcccccCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEe
Confidence 0 011 233445577773 34 36799999 7776 6899976
Q ss_pred C-----CCCcccCCC---chh-hH-HHHHHHHhh
Q 007779 200 S-----IGPHYSGND---PRE-MR-LVGALREVL 223 (590)
Q Consensus 200 ~-----~gvQfHPEs---~~~-m~-L~~~L~kl~ 223 (590)
+ .|||||||- +.. .. +..|++...
T Consensus 514 ~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~ 547 (557)
T PLN02327 514 PSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAAS 547 (557)
T ss_pred CCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHH
Confidence 6 499999996 222 22 666766553
No 90
>PRK06186 hypothetical protein; Validated
Probab=98.92 E-value=5.3e-09 Score=105.11 Aligned_cols=123 Identities=12% Similarity=0.039 Sum_probs=75.2
Q ss_pred ccCCCeEEECCCCCCCCCchhhhhHHHHHHHHhc-CCCCccc-ccchHHHHhHhCceeeccCCCCcC-------------
Q 007779 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEA------------- 158 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~~-~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~h------------- 158 (590)
|+.+|||++-||=|.=- -.|+ +.. ++.++ .++|+|| |||+|.+.-.|+-.+... +.-.+
T Consensus 51 l~~~dgilvpgGfg~rg---~~Gk-i~a-i~~Are~~iP~LGIClGmQ~avIe~arnv~g~-~dA~s~E~~~~~~~pvi~ 124 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRN---DDGA-LTA-IRFARENGIPFLGTCGGFQHALLEYARNVLGW-ADAAHAETDPEGDRPVIA 124 (229)
T ss_pred HhhCCeeEeCCCCCccc---HhHH-HHH-HHHHHHcCCCeEeechhhHHHHHHHHhhhcCC-cCCCcCCCCCCCCCCEEE
Confidence 66789999999976533 3343 445 66654 3699999 999998666666555322 11111
Q ss_pred ---------cc-cc--C--------CceeEEecc-chhccc-----cC-CCcEEEEe-ecCCcEEEEEcC-----CCCcc
Q 007779 159 ---------TQ-WS--E--------GERRAMNTF-WPLLMR-----AL-PPDVIFIA-DPEGSIMGGGGS-----IGPHY 205 (590)
Q Consensus 159 ---------G~-~s--~--------~~~~~~~ry-Hsl~v~-----~~-p~~l~v~a-~~~g~im~~~h~-----~gvQf 205 (590)
|. +. . |+....-|+ |.+.|+ .+ .++|+++| ++||.|+++..+ .||||
T Consensus 125 ~~~~~~~~~~h~v~l~~~S~l~~iyg~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQw 204 (229)
T PRK06186 125 PLSCSLVEKTGDIRLRPGSLIARAYGTLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGDVRAVELPGHPFFVATLF 204 (229)
T ss_pred ECccccccCceEEEECCCCHHHHHhCCCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCCEEEEEeCCCCcEEEEeC
Confidence 10 00 1 222222222 344453 12 56899999 899999999954 89999
Q ss_pred cCCC---chh-hH-HHHHHHHh
Q 007779 206 SGND---PRE-MR-LVGALREV 222 (590)
Q Consensus 206 HPEs---~~~-m~-L~~~L~kl 222 (590)
|||- +.. .. +..|++..
T Consensus 205 HPE~~s~~~~~~~LF~~Fv~aa 226 (229)
T PRK06186 205 QPERAALAGRPPPLVRAFLRAA 226 (229)
T ss_pred CCCccCCCCCCCHHHHHHHHHH
Confidence 9994 211 22 66666554
No 91
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.83 E-value=1e-08 Score=103.26 Aligned_cols=144 Identities=14% Similarity=0.063 Sum_probs=87.8
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc-----hhhhhHHHHHHHH-hcCCCCcc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE-----DEAFKVLDTILRS-AKGDLKDE 133 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~-----~~~g~~~~~~i~~-~~~~~Pil 133 (590)
..|++.|.++.++..+... ++.+|+|||+.|+..-+.. .+.....+. ++. ....+|++
T Consensus 19 ~al~~~G~~~~~i~~~~~~---------------l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~-l~~~~~~g~pvl 82 (227)
T TIGR01737 19 YALRLLGVDAEIVWYEDGS---------------LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQE-VREFAEKGVPVL 82 (227)
T ss_pred HHHHHCCCeEEEEecCCCC---------------CCCCCEEEECCCCcccccccccchhcchHHHHH-HHHHHHcCCEEE
Confidence 5677789988877543211 3456899999997432100 011224566 544 44569999
Q ss_pred c-ccchHHHHhH--hCceeeccCCCCcCcc-c-c---------------CCc--eeEEeccch-hccc-----cCCCcEE
Q 007779 134 E-EVSKAQLGAF--FSAMTIRANAFPEATQ-W-S---------------EGE--RRAMNTFWP-LLMR-----ALPPDVI 185 (590)
Q Consensus 134 G-CLGhQ~i~~~--~G~~v~~~~~~~~hG~-~-s---------------~~~--~~~~~ryHs-l~v~-----~~p~~l~ 185 (590)
| |.|+|.|+.+ ++|.+.+- ...+++. | . .|. .++++..++ +.++ .|.....
T Consensus 83 gIC~G~QlLa~~GlL~G~l~~n-~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~ 161 (227)
T TIGR01737 83 GICNGFQILVEAGLLPGALLPN-DSLRFICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQ 161 (227)
T ss_pred EECHHHHHHHHcCCCCCceeec-CCCceEEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHHHCCc
Confidence 9 9999999996 88888876 5555543 1 1 133 233343333 2332 3433323
Q ss_pred EE--e-e----------cCC---cEEEEEcC----CCCcccCCC--------chhhH-HHHHHH
Q 007779 186 FI--A-D----------PEG---SIMGGGGS----IGPHYSGND--------PREMR-LVGALR 220 (590)
Q Consensus 186 v~--a-~----------~~g---~im~~~h~----~gvQfHPEs--------~~~m~-L~~~L~ 220 (590)
|. . + ++| .|||+.|+ +|+|||||+ +.|+. ++++++
T Consensus 162 i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~ 225 (227)
T TIGR01737 162 VVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLVE 225 (227)
T ss_pred EEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccccCCcccHHHHHHHHh
Confidence 22 2 3 344 59999998 999999998 35665 666653
No 92
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=98.61 E-value=1.6e-07 Score=98.26 Aligned_cols=183 Identities=9% Similarity=-0.035 Sum_probs=106.3
Q ss_pred ccccccccceeEeecccc------HHHHHHhCC-----ceEEEeCCCCCc-----cccccCCCCCcccc-ccCCCeEEEC
Q 007779 41 GNRLIGRRIRLTVKADLD------SALIDQLGL-----KESDIINPAISS-----SYRSSKLPKPNQTL-LEAQAKVCTG 103 (590)
Q Consensus 41 ~~~~~~~~~~~~~~~~~d------~~~~~~lg~-----~~~v~rnd~~~~-----~~~~~~~~~~~~~~-~~~~~~ivls 103 (590)
.+|-| |+++|.++...= -|+++.|+. +++.++-+.-.. +..+. .-++...+ -+.+||+||.
T Consensus 29 ~~qdi-rpl~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~-~y~~~~~i~~~~~DG~IIT 106 (302)
T PRK05368 29 AHQDI-RPLKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLEN-FYCTFEDIKDEKFDGLIIT 106 (302)
T ss_pred ccccC-CCccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHH-hccCHHHhccCCCCEEEEc
Confidence 44555 446887776542 288888874 344444433111 00000 00111011 2368999999
Q ss_pred CCCCC--CCCchh-hhhHHHHHHHHhc-CCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc-----------CC--c
Q 007779 104 PTQTR--PLREDE-AFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS-----------EG--E 165 (590)
Q Consensus 104 pGPg~--P~~~~~-~g~~~~~~i~~~~-~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s-----------~~--~ 165 (590)
..|-. +-+..+ ...+.++ ++... ..+|+|| |.|||+++.++||......+.-..|... .| +
T Consensus 107 GAp~e~~~fedv~YW~El~~i-~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~~~~pL~~g~~d 185 (302)
T PRK05368 107 GAPVEQLPFEDVDYWDELKEI-LDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLDPHHPLLRGFDD 185 (302)
T ss_pred CCCCCCccCCCCchHHHHHHH-HHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcCCCChhhcCCCC
Confidence 88866 432222 1123333 44332 2599999 9999999999999622110111233211 11 2
Q ss_pred eeEEeccchhccc----cCCCcEEEEe-ecCCcEEEEEc---C-CCCcccCCCchhhHHHHHHHHhhcCC
Q 007779 166 RRAMNTFWPLLMR----ALPPDVIFIA-DPEGSIMGGGG---S-IGPHYSGNDPREMRLVGALREVLAGG 226 (590)
Q Consensus 166 ~~~~~ryHsl~v~----~~p~~l~v~a-~~~g~im~~~h---~-~gvQfHPEs~~~m~L~~~L~kl~~G~ 226 (590)
.|.+-..|-..|+ ..|++++|+| +++.-+.+++- + ++||||||=....-..++.|.+.+|.
T Consensus 186 ~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r~~~vQgHPEYd~~tL~~EY~RD~~~~~ 255 (302)
T PRK05368 186 SFLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKDKREVFVTGHPEYDADTLAQEYFRDLGAGL 255 (302)
T ss_pred ccccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 4666545544552 3688999999 66666777754 3 99999999766666778888888875
No 93
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.51 E-value=4.5e-07 Score=92.42 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=43.8
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhh---hHHHHHHHHh-cCCCCccc-
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAF---KVLDTILRSA-KGDLKDEE- 134 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g---~~~~~~i~~~-~~~~PilG- 134 (590)
+.|+.+|.++.++++.+ + ++..|+|||.. |-+....... ...+. |+++ ...+|+||
T Consensus 18 ~aL~~lG~ev~~v~~~~----~------------L~~~DgLILPG--Gfs~~~~~L~~~~gl~~~-I~~~v~~g~PvLGi 78 (248)
T PLN02832 18 AALRRLGVEAVEVRKPE----Q------------LEGVSGLIIPG--GESTTMAKLAERHNLFPA-LREFVKSGKPVWGT 78 (248)
T ss_pred HHHHHCCCcEEEeCCHH----H------------hccCCEEEeCC--CHHHHHHHHHhhcchHHH-HHHHHHcCCCEEEE
Confidence 77888999998887742 1 33458888855 3343111111 24555 5554 35799999
Q ss_pred ccchHHHHhHh
Q 007779 135 EVSKAQLGAFF 145 (590)
Q Consensus 135 CLGhQ~i~~~~ 145 (590)
|+|+|.|++.-
T Consensus 79 C~GmqlLa~~~ 89 (248)
T PLN02832 79 CAGLIFLAERA 89 (248)
T ss_pred ChhHHHHHHHh
Confidence 99999998864
No 94
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.47 E-value=5.7e-07 Score=87.36 Aligned_cols=141 Identities=6% Similarity=0.015 Sum_probs=92.5
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCC--CCchhhhhHHHHHHHHhcCCCCccc-cc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRP--LREDEAFKVLDTILRSAKGDLKDEE-EV 136 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P--~~~~~~g~~~~~~i~~~~~~~PilG-CL 136 (590)
+.|+.+|.++.++|+.+ + ++.+|+|||-.|+++. ...++. .+.+. |+++..+.|++| |+
T Consensus 19 ~al~~lG~~v~~v~~~~----~------------l~~~D~LILPGG~~t~~~~ll~~~-~l~~~-Ik~~~~~kpilGICa 80 (179)
T PRK13526 19 DMFKSLGVEVKLVKFNN----D------------FDSIDRLVIPGGESTTLLNLLNKH-QIFDK-LYNFCSSKPVFGTCA 80 (179)
T ss_pred HHHHHcCCcEEEECCHH----H------------HhCCCEEEECCChHHHHHHHhhhc-CcHHH-HHHHHcCCcEEEEcH
Confidence 67888999988887642 1 3456889996676654 212222 36777 777654679999 99
Q ss_pred chHHHHh---HhC---ceeeccCCCCcCc-ccc-----CCceeEEeccchhccccCCCcEEEEeecCCcEEEEEcC--CC
Q 007779 137 SKAQLGA---FFS---AMTIRANAFPEAT-QWS-----EGERRAMNTFWPLLMRALPPDVIFIADPEGSIMGGGGS--IG 202 (590)
Q Consensus 137 GhQ~i~~---~~G---~~v~~~~~~~~hG-~~s-----~~~~~~~~ryHsl~v~~~p~~l~v~a~~~g~im~~~h~--~g 202 (590)
|.|.|+. -+| ++|.|. .+...= .+. .+.+|.+.-.---.|.++.++++|+|+-+|.+.++|.. .+
T Consensus 81 G~qlL~~~s~~Lg~idg~V~Rn-~~Grq~~sf~~~~~~~~~~~~~vFiRAP~i~~~~~~v~vla~~~~~~v~v~q~~~l~ 159 (179)
T PRK13526 81 GSIILSKGEGYLNLLDLEVQRN-AYGRQVDSFVADISFNDKNITGVFIRAPKFIVVGNQVDILSKYQNSPVLLRQANILV 159 (179)
T ss_pred HHHHHHccCCCCCCccEEEEEc-CCCCccceeeeecCcCCceEEEEEEcCceEeEcCCCcEEEEEECCEEEEEEECCEEE
Confidence 9999998 455 677776 444210 111 12233333222223346778899999656788888887 99
Q ss_pred CcccCCCchhhHHHHHH
Q 007779 203 PHYSGNDPREMRLVGAL 219 (590)
Q Consensus 203 vQfHPEs~~~m~L~~~L 219 (590)
.-||||=....++.+|.
T Consensus 160 ~~FHPElt~d~r~h~~f 176 (179)
T PRK13526 160 SSFHPELTQDPTVHEYF 176 (179)
T ss_pred EEeCCccCCCchHHHHH
Confidence 99999987666665553
No 95
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.14 E-value=9.8e-06 Score=81.37 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=79.2
Q ss_pred HHHH-HhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCC-----chhhhhHHHHHHHH-hcCCCCc
Q 007779 60 ALID-QLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLR-----EDEAFKVLDTILRS-AKGDLKD 132 (590)
Q Consensus 60 ~~~~-~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~-----~~~~g~~~~~~i~~-~~~~~Pi 132 (590)
..|+ ..|.++..+..++.+ ++.+|+|||+.|++.-+. ........+. +++ +....|+
T Consensus 19 ~a~~~~~G~~~~~v~~~~~~---------------l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~-l~~~~~~g~~i 82 (219)
T PRK03619 19 RALRDLLGAEPEYVWHKETD---------------LDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKA-VKEFAEKGKPV 82 (219)
T ss_pred HHHHhcCCCeEEEEecCcCC---------------CCCCCEEEECCCCchhhhhccchhhhchHHHHH-HHHHHHCCCEE
Confidence 4566 788887766443211 446689999988753110 0111335566 544 4456999
Q ss_pred cc-ccchHHHHhH--hCceeeccCCCCcCc-ccc----------------CCceeEEeccc---hhcc-----ccCCC-c
Q 007779 133 EE-EVSKAQLGAF--FSAMTIRANAFPEAT-QWS----------------EGERRAMNTFW---PLLM-----RALPP-D 183 (590)
Q Consensus 133 lG-CLGhQ~i~~~--~G~~v~~~~~~~~hG-~~s----------------~~~~~~~~ryH---sl~v-----~~~p~-~ 183 (590)
+| |.|+|.|+++ +++++.+- +..++. +|. .|..+.+.--| -|.+ +.+.+ .
T Consensus 83 lgIC~G~qlLa~~GLL~g~l~~n-~~~~~~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~ 161 (219)
T PRK03619 83 LGICNGFQILTEAGLLPGALTRN-ASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNG 161 (219)
T ss_pred EEECHHHHHHHHcCCCCCeEEEc-CCCcEEEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCC
Confidence 99 9999999997 88888775 555442 111 23344331122 2222 24433 3
Q ss_pred EEEEe-e---cCC---cEEEEEcC----CCCcccCCC
Q 007779 184 VIFIA-D---PEG---SIMGGGGS----IGPHYSGND 209 (590)
Q Consensus 184 l~v~a-~---~~g---~im~~~h~----~gvQfHPEs 209 (590)
+.+.. + ++| .|.++... +|+|||||.
T Consensus 162 ~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~ 198 (219)
T PRK03619 162 QVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPER 198 (219)
T ss_pred cEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCc
Confidence 44443 3 566 47888763 999999997
No 96
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00012 Score=79.94 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=74.0
Q ss_pred CCeEEECCCCCCCCCchhhhhHHHHHHHHhcC-CCCccc-ccchHHHHhHhCceeeccCCCCcC------ccc-------
Q 007779 97 QAKVCTGPTQTRPLREDEAFKVLDTILRSAKG-DLKDEE-EVSKAQLGAFFSAMTIRANAFPEA------TQW------- 161 (590)
Q Consensus 97 ~~~ivlspGPg~P~~~~~~g~~~~~~i~~~~~-~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~h------G~~------- 161 (590)
.|||++-+|=|.=- -.|+. .. ++.++. ++|+|| |||+|...-.|.-.|..+ +.-.. ++.
T Consensus 344 ~dgIlVPGGFG~RG---~eGkI-~A-i~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl-~~AnS~Efdp~t~~pVv~l~~ 417 (533)
T COG0504 344 VDGILVPGGFGYRG---VEGKI-AA-IRYARENNIPFLGICLGMQLAVIEFARNVLGL-EGANSTEFDPDTKYPVVDLMP 417 (533)
T ss_pred CCEEEeCCCCCcCc---hHHHH-HH-HHHHHhcCCCEEEEchhHHHHHHHHHHHhcCC-ccCcccccCCCCCCceEEecc
Confidence 69999999988654 34543 34 565554 599999 999999988886555443 11100 100
Q ss_pred ---c------------------CC---------ceeEEeccchhccc-----cC-CCcEEEEe-ecCC-cEEEEEcC---
Q 007779 162 ---S------------------EG---------ERRAMNTFWPLLMR-----AL-PPDVIFIA-DPEG-SIMGGGGS--- 200 (590)
Q Consensus 162 ---s------------------~~---------~~~~~~ryHsl~v~-----~~-p~~l~v~a-~~~g-~im~~~h~--- 200 (590)
. .| +...--.-|-|.|+ .+ -..|++.+ ++|| .++.+...
T Consensus 418 eq~~~~~lGGTmRLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hp 497 (533)
T COG0504 418 EQKDVVDLGGTMRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHP 497 (533)
T ss_pred ccccCCcCCceeeccceeeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCc
Confidence 0 01 02222344666663 23 23699999 7776 46666655
Q ss_pred --CCCcccCCC---ch-hhH-HHHHHHHhh
Q 007779 201 --IGPHYSGND---PR-EMR-LVGALREVL 223 (590)
Q Consensus 201 --~gvQfHPEs---~~-~m~-L~~~L~kl~ 223 (590)
.|+|||||= +. ... +..|++...
T Consensus 498 fFv~~QfHPEf~SrP~~phPlf~~fv~Aa~ 527 (533)
T COG0504 498 FFVATQFHPEFKSRPLRPHPLFVGFVKAAL 527 (533)
T ss_pred eEEEEcccccccCCCCCCCccHHHHHHHHH
Confidence 899999993 22 222 667776554
No 97
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00024 Score=74.21 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=90.9
Q ss_pred cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCC--CCC--chhhhhHHHHHHHHh-cC
Q 007779 56 DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTR--PLR--EDEAFKVLDTILRSA-KG 128 (590)
Q Consensus 56 ~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~--P~~--~~~~g~~~~~~i~~~-~~ 128 (590)
|+-| +-++.||..+..++|+.- +. .-|++ |=||=|+ |.. .-..| ..+- ++++ ..
T Consensus 13 n~~si~nal~hlg~~i~~v~~P~D-I~---------------~a~rL-IfPGVGnfg~~~D~L~~~G-f~ep-lr~Yies 73 (541)
T KOG0623|consen 13 NVRSIRNALRHLGFSIKDVQTPGD-IL---------------NADRL-IFPGVGNFGPAMDVLNRTG-FAEP-LRKYIES 73 (541)
T ss_pred cHHHHHHHHHhcCceeeeccCchh-hc---------------cCceE-eecCcccchHHHHHHhhhh-hHHH-HHHHHhc
Confidence 3444 889999999999998731 11 11344 4577776 321 01122 2344 4443 44
Q ss_pred CCCccc-ccchHHHHhHhCceeeccC-------------------CCCcCcccc-----CCc------eeEEeccchhcc
Q 007779 129 DLKDEE-EVSKAQLGAFFSAMTIRAN-------------------AFPEATQWS-----EGE------RRAMNTFWPLLM 177 (590)
Q Consensus 129 ~~PilG-CLGhQ~i~~~~G~~v~~~~-------------------~~~~hG~~s-----~~~------~~~~~ryHsl~v 177 (590)
..|++| |+|.|+| |-+.+..-+ ..|+-|-+| +.+ ...+---||+..
T Consensus 74 gkPfmgicvGlQaL---F~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~~~~YFVHSyl~ 150 (541)
T KOG0623|consen 74 GKPFMGICVGLQAL---FDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPNRHVYFVHSYLN 150 (541)
T ss_pred CCCeEeehhhHHHH---hcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCCCceEEEEeeecc
Confidence 699999 9999997 444443220 112223222 111 122233488866
Q ss_pred c----cCCC-cEEEEeecCC---cEEEEEcC--CCCcccCCC--chhhH-HHHHHHHhhcCCCCCHHHHHHHHH
Q 007779 178 R----ALPP-DVIFIADPEG---SIMGGGGS--IGPHYSGND--PREMR-LVGALREVLAGGHLGYEEVQGVLR 238 (590)
Q Consensus 178 ~----~~p~-~l~v~a~~~g---~im~~~h~--~gvQfHPEs--~~~m~-L~~~L~kl~~G~~Lt~eEa~~a~~ 238 (590)
. ++++ ++++.-+.-| -|-+++.. +.+|||||- +.|.+ |++||. ..-+++...|++.+|+
T Consensus 151 ~ek~~~len~~wkiat~kYG~E~Fi~ai~knN~~AtQFHPEKSG~aGL~vl~~FL~--~~~ppips~e~~kl~e 222 (541)
T KOG0623|consen 151 REKPKSLENKDWKIATCKYGSESFISAIRKNNVHATQFHPEKSGEAGLSVLRRFLH--QQSPPIPSAETQKLME 222 (541)
T ss_pred cccccCCCCCCceEeeeccCcHHHHHHHhcCceeeEecccccccchhHHHHHHHHh--ccCCCCCchhhhhhhh
Confidence 3 4544 4665544333 36666655 999999996 77887 888887 3345665556655543
No 98
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=96.92 E-value=0.0052 Score=60.14 Aligned_cols=144 Identities=13% Similarity=0.177 Sum_probs=78.7
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCC-C-chhhhhHHHHHHHHh-cC-CCCccc-
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPL-R-EDEAFKVLDTILRSA-KG-DLKDEE- 134 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~-~-~~~~g~~~~~~i~~~-~~-~~PilG- 134 (590)
++|+++|.+...+|..+ + ++.-|++||-.|=.+=- . ..+. .+.+- |+++ .. ++|++|
T Consensus 13 ~~l~~lg~~~~~Vr~~~----d------------L~~~dgLIiPGGESTti~~ll~~~-gL~~~-l~~~~~~g~~Pv~GT 74 (188)
T PF01174_consen 13 RMLERLGAEVVEVRTPE----D------------LEGLDGLIIPGGESTTIGKLLRRY-GLFEP-LREFIRSGSKPVWGT 74 (188)
T ss_dssp HHHHHTTSEEEEE-SGG----G------------GTT-SEEEE-SS-HHHHHHHHHHT-THHHH-HHHHHHTT--EEEEE
T ss_pred HHHHHcCCCeEEeCCHH----H------------HccCCEEEECCCcHHHHHHHHHHc-CCHHH-HHHHHHcCCCceeeh
Confidence 67999999888777642 1 44558999965522100 0 0011 23444 4443 33 499999
Q ss_pred ccchHHHHh--------HhCceeeccCCCCcCccc-c--------C--CceeEEeccchhccccC--CCcEEEEeecCCc
Q 007779 135 EVSKAQLGA--------FFSAMTIRANAFPEATQW-S--------E--GERRAMNTFWPLLMRAL--PPDVIFIADPEGS 193 (590)
Q Consensus 135 CLGhQ~i~~--------~~G~~v~~~~~~~~hG~~-s--------~--~~~~~~~ryHsl~v~~~--p~~l~v~a~~~g~ 193 (590)
|=|.-.|+. .+|+.=+.. .+=..|.. . . +++|.+.-..--.|.++ |+..+|.+..+|.
T Consensus 75 CAGlIlLa~~v~~~~q~~Lg~ldi~V-~RNafGrQ~~SFe~~l~i~~~~~~~~avFIRAP~I~~v~~~~~v~vla~~~g~ 153 (188)
T PF01174_consen 75 CAGLILLAKEVEGQGQPLLGLLDITV-RRNAFGRQLDSFEADLDIPGLGEPFPAVFIRAPVIEEVGSPEGVEVLAELDGK 153 (188)
T ss_dssp THHHHHHEEEECSSCCTSS--EEEEE-ETTTTCSSSCEEEEEEEETTTESEEEEEESS--EEEEE--TTTEEEEEEETTE
T ss_pred hHHHHHhhhhhhhcccccccceeEEE-EccccccchhcEEEEEEeecCCCcEEEEEcCCcEEEEeecccccccccccccc
Confidence 999999987 344433322 11122322 1 1 23555554444444444 3679999965678
Q ss_pred EEEEEcC--CCCcccCCCchh-hHHHH-HHHHh
Q 007779 194 IMGGGGS--IGPHYSGNDPRE-MRLVG-ALREV 222 (590)
Q Consensus 194 im~~~h~--~gvQfHPEs~~~-m~L~~-~L~kl 222 (590)
|.|++.. .+.-||||=... .++.+ ||+++
T Consensus 154 iVav~qgn~latsFHPELT~D~~r~H~yFl~~v 186 (188)
T PF01174_consen 154 IVAVRQGNILATSFHPELTDDDTRIHEYFLEMV 186 (188)
T ss_dssp EEEEEETTEEEESS-GGGSSTHCHHHHHHHHHH
T ss_pred eEEEEecCEEEEEeCCcccCchhHHHHHHHHHh
Confidence 8888866 999999997554 66444 44443
No 99
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=96.83 E-value=0.0028 Score=64.44 Aligned_cols=82 Identities=10% Similarity=-0.016 Sum_probs=54.1
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchh-----hhh-HHHHHHHHh-cCCCCc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDE-----AFK-VLDTILRSA-KGDLKD 132 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~-----~g~-~~~~~i~~~-~~~~Pi 132 (590)
..|++.|.++.++..+.. ... . ..++.+|+|||..|+..-+.... ... ..++ ++.+ ...+|+
T Consensus 17 ~al~~aG~~v~~v~~~~~-~~~------~---~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~-l~~~~~~g~pv 85 (238)
T cd01740 17 YAFELAGFEAEDVWHNDL-LAG------R---KDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEE-VKEFAERGGLV 85 (238)
T ss_pred HHHHHcCCCEEEEeccCC-ccc------c---CCHhhCCEEEECCCCCcccccccccccccChhHHHH-HHHHHhCCCeE
Confidence 456778999888876542 111 0 01557899999999864331110 111 5566 6654 456999
Q ss_pred cc-ccchHHHHhH--hCceeecc
Q 007779 133 EE-EVSKAQLGAF--FSAMTIRA 152 (590)
Q Consensus 133 lG-CLGhQ~i~~~--~G~~v~~~ 152 (590)
+| |.|+|.|+++ .++++.+-
T Consensus 86 lGIC~G~QlL~~~gll~g~~~~~ 108 (238)
T cd01740 86 LGICNGFQILVELGLLPGALIRN 108 (238)
T ss_pred EEECcHHHHHHHcCCCccccccC
Confidence 99 9999999998 88877654
No 100
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0046 Score=66.94 Aligned_cols=49 Identities=8% Similarity=-0.118 Sum_probs=33.7
Q ss_pred CCeEEECCCCCCCCCchhhhhHHHHHHHHhcC-CCCccc-ccchHHHHhHhCceee
Q 007779 97 QAKVCTGPTQTRPLREDEAFKVLDTILRSAKG-DLKDEE-EVSKAQLGAFFSAMTI 150 (590)
Q Consensus 97 ~~~ivlspGPg~P~~~~~~g~~~~~~i~~~~~-~~PilG-CLGhQ~i~~~~G~~v~ 150 (590)
-|||++-.|=|.=- -.|.++ . ++.++. ++|.|| |||+|.-.-.|.-.|.
T Consensus 364 adGilvPGGFG~RG---veG~i~-A-ak~ARen~iP~LGiCLGmQ~AvIEfaRnvL 414 (585)
T KOG2387|consen 364 ADGILVPGGFGDRG---VEGKIL-A-AKWARENKIPFLGICLGMQLAVIEFARNVL 414 (585)
T ss_pred CCeEEeCCcccccc---hhHHHH-H-HHHHHhcCCCeEeeehhhhHHHHHHHHHhh
Confidence 58999988777654 334433 3 444443 599999 9999998877754443
No 101
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=96.35 E-value=0.017 Score=56.38 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=86.8
Q ss_pred HHHHHhC-CceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCC--chhhhhHHHHHHHHhcCCCCccc-c
Q 007779 60 ALIDQLG-LKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLR--EDEAFKVLDTILRSAKGDLKDEE-E 135 (590)
Q Consensus 60 ~~~~~lg-~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~--~~~~g~~~~~~i~~~~~~~PilG-C 135 (590)
+.+++++ .++..+|+.+ + ++.-|++||-.|=.+--. ..+.|. .+-|.+.....+|++| |
T Consensus 17 ~~l~~~~~~e~~~Vk~~~----d------------L~~~d~LIiPGGESTTi~rL~~~~gl-~e~l~~~~~~G~Pv~GTC 79 (194)
T COG0311 17 EALEKAGGAEVVEVKRPE----D------------LEGVDGLIIPGGESTTIGRLLKRYGL-LEPLREFIADGLPVFGTC 79 (194)
T ss_pred HHHHhhcCCceEEEcCHH----H------------hccCcEEEecCccHHHHHHHHHHcCc-HHHHHHHHHcCCceEEec
Confidence 5678884 8888777642 1 445588999776433100 112233 3342455566799999 9
Q ss_pred cchHHHHh-HhCc-e----------eeccCCCCcCcccc---C--------Cce--eEEeccchhccccCCCcEEEEeec
Q 007779 136 VSKAQLGA-FFSA-M----------TIRANAFPEATQWS---E--------GER--RAMNTFWPLLMRALPPDVIFIADP 190 (590)
Q Consensus 136 LGhQ~i~~-~~G~-~----------v~~~~~~~~hG~~s---~--------~~~--~~~~ryHsl~v~~~p~~l~v~a~~ 190 (590)
=|.-.|+. .-++ . |.| |.| |... + +.+ +.++---.-+|..+-+..++.|+-
T Consensus 80 AGlIlLakei~~~~~~~~Lg~mdi~V~R-NAf---GRQ~dSFe~~~di~~~~~~~~~~avFIRAP~I~~vg~~V~vLa~l 155 (194)
T COG0311 80 AGLILLAKEILDGPEQPLLGLLDVTVRR-NAF---GRQVDSFETELDIEGFGLPFPFPAVFIRAPVIEEVGDGVEVLATL 155 (194)
T ss_pred hhhhhhhhhhcCCCCCcccceEEEEEEc-ccc---ccccccceeeEEeecccCCCcceEEEEEcceeehhcCcceEeeee
Confidence 99999984 3321 1 111 122 3221 1 111 322322333344444479999966
Q ss_pred CCcEEEEEcC--CCCcccCCCchhhHHHHHHHHhhcC
Q 007779 191 EGSIMGGGGS--IGPHYSGNDPREMRLVGALREVLAG 225 (590)
Q Consensus 191 ~g~im~~~h~--~gvQfHPEs~~~m~L~~~L~kl~~G 225 (590)
|+.|.|++.. .+.-||||=....++.+|..++..+
T Consensus 156 ~~~iVav~qgn~LatsFHPELT~D~r~Heyf~~~v~~ 192 (194)
T COG0311 156 DGRIVAVKQGNILATSFHPELTDDTRLHEYFLDMVLG 192 (194)
T ss_pred CCEEEEEEeCCEEEEecCccccCCccHHHHHHHHhhc
Confidence 7788888877 9999999987766877777666543
No 102
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=96.14 E-value=0.0064 Score=59.85 Aligned_cols=75 Identities=9% Similarity=0.039 Sum_probs=48.5
Q ss_pred ccccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchh--hhhHHHHHHHH-hcCC
Q 007779 55 ADLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDE--AFKVLDTILRS-AKGD 129 (590)
Q Consensus 55 ~~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~--~g~~~~~~i~~-~~~~ 129 (590)
.|+.+ +.+++.|+++.+++.++= ++.+|+|||..|+-....... .....+. |++ ....
T Consensus 10 gN~~~l~~~~~~~G~~~~~~~~~~~----------------~~~~d~lilpGg~~~~~~~~~~~~~~~~~~-i~~~~~~g 72 (194)
T cd01750 10 SNFTDLDPLAREPGVDVRYVEVPEG----------------LGDADLIILPGSKDTIQDLAWLRKRGLAEA-IKNYARAG 72 (194)
T ss_pred cCHHHHHHHHhcCCceEEEEeCCCC----------------CCCCCEEEECCCcchHHHHHHHHHcCHHHH-HHHHHHCC
Confidence 45555 667788999998876431 224588999766633221000 1124555 444 4457
Q ss_pred CCccc-ccchHHHHhHhC
Q 007779 130 LKDEE-EVSKAQLGAFFS 146 (590)
Q Consensus 130 ~PilG-CLGhQ~i~~~~G 146 (590)
+|++| |+|.|.|++.+.
T Consensus 73 ~pvlgiC~G~qlL~~~~~ 90 (194)
T cd01750 73 GPVLGICGGYQMLGKYIV 90 (194)
T ss_pred CcEEEECHHHHHhhhhcc
Confidence 99999 999999999984
No 103
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=96.01 E-value=0.013 Score=60.70 Aligned_cols=74 Identities=5% Similarity=-0.027 Sum_probs=45.7
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCC--CCCCch-----hh-hhHHHHHHHH-hcCCC
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQT--RPLRED-----EA-FKVLDTILRS-AKGDL 130 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg--~P~~~~-----~~-g~~~~~~i~~-~~~~~ 130 (590)
..|++.|.++.++.-...... . ..++.+|+|||..|.+ ++.... .. ..+.+. |++ +...+
T Consensus 22 ~Al~~aG~~v~~v~~~~~~~~-------~---~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~-Ik~f~~~gk 90 (261)
T PRK01175 22 KAFRRLGVEPEYVHINDLAAE-------R---KSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKD-IEEFIDEGY 90 (261)
T ss_pred HHHHHCCCcEEEEeecccccc-------c---cchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHH-HHHHHHCCC
Confidence 667788998887754321110 0 1156789999988864 332111 00 113355 555 44569
Q ss_pred Cccc-ccchHHHHhH
Q 007779 131 KDEE-EVSKAQLGAF 144 (590)
Q Consensus 131 PilG-CLGhQ~i~~~ 144 (590)
|+|| |.|+|.|+++
T Consensus 91 pVLGICnG~QlLa~~ 105 (261)
T PRK01175 91 PIIGICNGFQVLVEL 105 (261)
T ss_pred eEEEECHHHHHHHHC
Confidence 9999 9999999984
No 104
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=93.91 E-value=0.094 Score=51.82 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=45.9
Q ss_pred EeeccccHHHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCC-chhh---hhHHHHHHHHh-
Q 007779 52 TVKADLDSALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLR-EDEA---FKVLDTILRSA- 126 (590)
Q Consensus 52 ~~~~~~d~~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~-~~~~---g~~~~~~i~~~- 126 (590)
|..+++| .|+++|+++.+++... .++ +..+|+|||.. |.|.. .+.. ....+. |+++
T Consensus 12 ~y~e~~~--~l~~~G~~v~~~s~~~--~~~------------l~~~D~lilPG--G~~~~~~~~L~~~~~~~~~-i~~~~ 72 (198)
T cd03130 12 YYPENLE--LLEAAGAELVPFSPLK--DEE------------LPDADGLYLGG--GYPELFAEELSANQSMRES-IRAFA 72 (198)
T ss_pred ccHHHHH--HHHHCCCEEEEECCCC--CCC------------CCCCCEEEECC--CchHHHHHHHHhhHHHHHH-HHHHH
Confidence 5555554 4778999888876521 010 22357787755 45531 1111 124566 5554
Q ss_pred cCCCCccc-ccchHHHHhHh
Q 007779 127 KGDLKDEE-EVSKAQLGAFF 145 (590)
Q Consensus 127 ~~~~PilG-CLGhQ~i~~~~ 145 (590)
...+|++| |.|.|.|++..
T Consensus 73 ~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 73 ESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HcCCCEEEEcccHHHHHHHh
Confidence 34689999 99999999877
No 105
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=93.91 E-value=0.15 Score=40.37 Aligned_cols=73 Identities=8% Similarity=-0.075 Sum_probs=48.2
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHHhcCCCCccc-ccch
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSK 138 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~~~~~PilG-CLGh 138 (590)
..+++.+.++.++......... ......+|+||+..|+..+...+.....++.+.+.+..+.|++| |.|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 89 (92)
T cd03128 19 DALREAGAEVDVVSPDGGPVES---------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGA 89 (92)
T ss_pred HHHHhCCCEEEEEeCCCCcccc---------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEeccc
Confidence 6677778888877665432211 01144679999999999886322225566663555655799999 9999
Q ss_pred HHH
Q 007779 139 AQL 141 (590)
Q Consensus 139 Q~i 141 (590)
|.+
T Consensus 90 ~~~ 92 (92)
T cd03128 90 QLL 92 (92)
T ss_pred ccC
Confidence 863
No 106
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=92.82 E-value=0.3 Score=40.49 Aligned_cols=72 Identities=11% Similarity=-0.027 Sum_probs=47.1
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHH-hcCCCCccc-ccc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVS 137 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~-~~~~~PilG-CLG 137 (590)
..+++.+.++.++.-....... ......+|+|++..|+..+.........++. +++ ...+.|++| |.|
T Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~-i~~~~~~~~~i~~~c~g 88 (115)
T cd01653 19 DALREAGAEVDVVSPDGGPVES---------DVDLDDYDGLILPGGPGTPDDLARDEALLAL-LREAAAAGKPILGICLG 88 (115)
T ss_pred HHHHHCCCeEEEEcCCCCceec---------cCChhccCEEEECCCCCchhhhccCHHHHHH-HHHHHHcCCEEEEECch
Confidence 5677778888888665432211 0113457899999999887622112455666 444 444689999 999
Q ss_pred hHHH
Q 007779 138 KAQL 141 (590)
Q Consensus 138 hQ~i 141 (590)
.|.+
T Consensus 89 ~~~l 92 (115)
T cd01653 89 AQLL 92 (115)
T ss_pred hHhH
Confidence 9999
No 107
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=92.10 E-value=0.13 Score=52.13 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=41.8
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH----HHHh-cC-CCCcc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI----LRSA-KG-DLKDE 133 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~----i~~~-~~-~~Pil 133 (590)
.|.+.-|+.|.-++-|+. +++.. ..++-..||++-.|=-.-. +...+.+.| +++. +| ..|+-
T Consensus 84 K~aEsgGARViPli~nep--Ee~lf-------qklelvNGviftGGwak~~---dY~~vvkkifnk~le~nDaGehFPvy 151 (340)
T KOG1559|consen 84 KLAESGGARVIPLIYNEP--EEILF-------QKLELVNGVIFTGGWAKRG---DYFEVVKKIFNKVLERNDAGEHFPVY 151 (340)
T ss_pred HHHHcCCceEEEEecCCc--HHHHH-------HHHHHhceeEecCcccccc---cHHHHHHHHHHHHHhccCCccccchh
Confidence 445555898887776653 22110 1144446898877732222 443333332 3332 22 48999
Q ss_pred c-ccchHHHHhHh
Q 007779 134 E-EVSKAQLGAFF 145 (590)
Q Consensus 134 G-CLGhQ~i~~~~ 145 (590)
| |||+..|...-
T Consensus 152 g~CLGFE~lsmiI 164 (340)
T KOG1559|consen 152 GICLGFELLSMII 164 (340)
T ss_pred hhhhhHHHHHHHH
Confidence 9 99999887644
No 108
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.26 E-value=2.1 Score=43.91 Aligned_cols=189 Identities=20% Similarity=0.207 Sum_probs=98.1
Q ss_pred cEEEEEcC---CCCcccCCCchhhHHHHHHHHh---------hcCC---CCCHHHHHHHHHHhcCCccCCCCCCCCHHHH
Q 007779 193 SIMGGGGS---IGPHYSGNDPREMRLVGALREV---------LAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLL 257 (590)
Q Consensus 193 ~im~~~h~---~gvQfHPEs~~~m~L~~~L~kl---------~~G~---~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qi 257 (590)
.|.|+... +|.+|--+-+.-.+..++++.- ..|+ -|+.+|...+++.=- .-++|-..+
T Consensus 26 PvVaLESTIisHGMPypqn~ema~~ve~iiR~~GavpAtIaii~G~i~iGLs~eelE~la~~~~-------a~KvsrrDl 98 (310)
T COG2313 26 PVVALESTIISHGMPYPQNVEMAREVEEIIRDQGAVPATIAIIGGKIKIGLSKEELELLAREGN-------AMKVSRRDL 98 (310)
T ss_pred CEEEEeeeeeecCCCCCcHHHHHHHHHHHHHhcCCcceeEEEeccEEEeecCHHHHHHHhhcCc-------cceeeccch
Confidence 47787665 6666632223333355555552 2233 466666655554331 224444444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCC---ccccchHHHHHHHhcCCCcEEeecCCC
Q 007779 258 SAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT---RFFRSTLFVAAVRSCYGESCLLHGAEW 334 (590)
Q Consensus 258 gAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~---t~niST~laA~vlAa~Gv~V~kHGnr~ 334 (590)
+|.+|.+-.|-|-=--.=++-++. ...++-+=|+||..++ ||-+|.=|- =+|..++-|+--|..+
T Consensus 99 -~~vvA~~~~gaTTVAaTMi~A~~a---------GI~vfaTGGiGGVHrGAe~t~DISaDL~--ELa~T~v~vV~AGaKs 166 (310)
T COG2313 99 -PFVVAEGKNGATTVAATMILAALA---------GIKVFATGGIGGVHRGAEHTFDISADLT--ELARTNVTVVCAGAKS 166 (310)
T ss_pred -HHHHhcCcCCcchHHHHHHHHHHc---------CceEEEecCcccccCCcccccccchhHH--HHhcCCeEEEecCchh
Confidence 566666666654211111111111 1122334455555555 566655322 3456666666666666
Q ss_pred CCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCCCC--Ccchhhhhhhhc
Q 007779 335 MPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPV--ATSEKVQQFVRA 412 (590)
Q Consensus 335 vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL--~np~k~~~~lnP 412 (590)
+=.-.-+ -++||..|+++ +|| ..+-.|++.. |+-|++.|| .+|+
T Consensus 167 ILDi~~T--lE~LET~gVPv---------------vg~----~t~~fPaF~s-----R~Sg~~~pl~l~~pe-------- 212 (310)
T COG2313 167 ILDIGLT--LEVLETQGVPV---------------VGY----QTNEFPAFFS-----RESGFRVPLRLESPE-------- 212 (310)
T ss_pred hhccHHH--HHHHHhcCcce---------------eec----CCCcccchhc-----ccCCCcCccccCCHH--------
Confidence 5554333 56666666665 233 4555677653 456777764 4444
Q ss_pred cCCceEEEEecCCcchHHHHHHHHHcCCceEEEEec
Q 007779 413 QGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKG 448 (590)
Q Consensus 413 ~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G 448 (590)
....+.....++|.+.+++|-.
T Consensus 213 --------------~ia~~~~t~~~lglegg~lVaN 234 (310)
T COG2313 213 --------------EIARILATKWQLGLEGGLLVAN 234 (310)
T ss_pred --------------HHHHHHHHHHHhCCCCceEEec
Confidence 3344556677888877777764
No 109
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=88.89 E-value=0.48 Score=46.24 Aligned_cols=65 Identities=8% Similarity=-0.137 Sum_probs=41.1
Q ss_pred ccCCCeEEECCCCCCCCCchhh---hhHHHHHHHHhc-CCCCccc-ccchHHHHhHhCcee-eccCCCCcCcc
Q 007779 94 LEAQAKVCTGPTQTRPLREDEA---FKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFSAMT-IRANAFPEATQ 160 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~~---g~~~~~~i~~~~-~~~PilG-CLGhQ~i~~~~G~~v-~~~~~~~~hG~ 160 (590)
...+||+||..-|=.=.+.++. ..+.++ ++-.+ ...|+|| |.|+|+...++||.. ..+ +.-.+|.
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i-~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~-~~K~~Gv 130 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEI-LDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQL-PEKIFGV 130 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHH-HHHHHHhCcchHHHHHHHHHHHHHHcCcccccC-CCceEEE
Confidence 3468999999777542211221 112222 33332 2489999 999999999999986 455 5655564
No 110
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=88.40 E-value=0.59 Score=52.49 Aligned_cols=47 Identities=4% Similarity=-0.171 Sum_probs=27.8
Q ss_pred ccCCCeEEECCCCCCCCCchhh-hhHHHHHHHHhcCCCCccc-ccchHHHHhHh
Q 007779 94 LEAQAKVCTGPTQTRPLREDEA-FKVLDTILRSAKGDLKDEE-EVSKAQLGAFF 145 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~~-g~~~~~~i~~~~~~~PilG-CLGhQ~i~~~~ 145 (590)
++.+|+|||..| .=....+. -...+. |+++ ..|+|| |.|+|.|++..
T Consensus 34 l~~~D~lILPGG--~~~~~~~l~~~l~~~-i~~~--g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 34 IKDLDGLIIPGG--SLVESGSLTDELKKE-ILNF--DGYIIGICSGFQILSEKI 82 (476)
T ss_pred hccCCEEEECCC--chhhcchHHHHHHHH-HHHc--CCeEEEEcHHHHhccccc
Confidence 445578887544 21100011 112344 4444 699999 99999999876
No 111
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=88.20 E-value=3.2 Score=34.67 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHh
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLA 280 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A 280 (590)
|+++|+++-+|+ +.++.+.-|...+ +.+|+.+++..=-.|=-.|.+++|+..+|+.
T Consensus 2 LK~ii~~Lh~G~--~~e~vk~~F~~~~--------~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 2 LKEIIKRLHEGE--DPEEVKEEFKKLF--------SDVSASEISAAEQELIQEGMPVEEIQKLCDV 57 (71)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence 689999999997 7899999999999 7899999999988887799999999999863
No 112
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=87.48 E-value=1.6 Score=41.15 Aligned_cols=47 Identities=9% Similarity=-0.110 Sum_probs=33.8
Q ss_pred CCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 96 AQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 96 ~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
.+|.|++..|++ +....+.....+. ++++ ....|+.+ |-|.+.|+.+
T Consensus 60 ~~D~vvv~Gg~~-~~~~~~~~~l~~~-l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 60 EYDALVIPGGRA-PEYLRLNNKAVRL-VREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HCcEEEECCCCC-HHHhccCHHHHHH-HHHHHHcCCEEEEEChHHHHHHhc
Confidence 479999988877 4422223456777 6664 45689999 9999999974
No 113
>PRK00784 cobyric acid synthase; Provisional
Probab=87.45 E-value=0.7 Score=51.98 Aligned_cols=71 Identities=13% Similarity=-0.012 Sum_probs=45.9
Q ss_pred cc-cHHHHHH-hCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCch-h---hhhHHHHHHHH-hcC
Q 007779 56 DL-DSALIDQ-LGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRED-E---AFKVLDTILRS-AKG 128 (590)
Q Consensus 56 ~~-d~~~~~~-lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~-~---~g~~~~~~i~~-~~~ 128 (590)
|| |...|++ .|+++..++..+ + +...|+|+|..|. |.... + ...+.+. |++ ...
T Consensus 264 ~f~nl~~l~~~~g~~v~~~s~~~----~------------l~~~d~lilpGg~--~~~~~~~~~~~~~l~~~-i~~~~~~ 324 (488)
T PRK00784 264 NFTDFDPLRAEPGVDVRYVRPGE----P------------LPDADLVILPGSK--NTIADLAWLRESGWDEA-IRAHARR 324 (488)
T ss_pred CccChHHHhhcCCCeEEEECCcc----c------------cccCCEEEECCcc--chHHHHHHHHHcCHHHH-HHHHHHc
Confidence 45 3366776 898888885532 1 3345889998887 43211 1 1114455 554 445
Q ss_pred CCCccc-ccchHHHHhHh
Q 007779 129 DLKDEE-EVSKAQLGAFF 145 (590)
Q Consensus 129 ~~PilG-CLGhQ~i~~~~ 145 (590)
..|++| |.|+|.|+...
T Consensus 325 g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 325 GGPVLGICGGYQMLGRRI 342 (488)
T ss_pred CCeEEEECHHHHHHhhhc
Confidence 699999 99999999987
No 114
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=87.05 E-value=1.6 Score=41.90 Aligned_cols=47 Identities=15% Similarity=-0.035 Sum_probs=33.1
Q ss_pred CCCeEEECCCCCCCCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 96 AQAKVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 96 ~~~~ivlspGPg~P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
.+|.|++..||+. ..........++ +++ +....||.| |-|.+.|+.+
T Consensus 76 ~~D~liv~GG~~~-~~~~~~~~~~~~-l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAP-EYLRLDEKVLAI-VRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCCh-hhhccCHHHHHH-HHHHHHcCCEEEEECcHHHHHHHc
Confidence 4699999888753 211122446677 655 555689999 9999999986
No 115
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.77 E-value=14 Score=41.06 Aligned_cols=157 Identities=12% Similarity=0.039 Sum_probs=93.7
Q ss_pred HHHHHHHhhcCC---CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHH--HHHHHHHhhhhcCCCCC
Q 007779 215 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR--ELKAYCLAFDDELGPPP 289 (590)
Q Consensus 215 L~~~L~kl~~G~---~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~e--Elag~~~A~~~~~~~~~ 289 (590)
+++.|.....+. ....+..+.+.+.++ .-.+++.-+-.++-.++-+....+ -...+.+.+.+.....+
T Consensus 142 lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~-------~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 214 (424)
T PRK05703 142 LKNLLEDQLSGLRQVERIPPEFAELYKRLK-------RSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRV 214 (424)
T ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCccc
Confidence 777777666543 223445566667777 788999888888888876655444 34455555554332211
Q ss_pred ---CCCCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHH----HhcCCCC--CCCHHH
Q 007779 290 ---VADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSVLQ 360 (590)
Q Consensus 290 ---~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvL----eaLGi~i--~~s~e~ 360 (590)
......+-.+|++|.|+.|+-...+ +.+.+...|.+|+.-..+. -+.|. .+-| +.+|+++ ..++++
T Consensus 215 ~~~~~~~~~i~~vGptGvGKTTt~~kLA-~~~~~~~~g~~V~li~~D~--~r~~a--~eqL~~~a~~~~vp~~~~~~~~~ 289 (424)
T PRK05703 215 EDILKQGGVVALVGPTGVGKTTTLAKLA-ARYALLYGKKKVALITLDT--YRIGA--VEQLKTYAKIMGIPVEVVYDPKE 289 (424)
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHH-HHHHHhcCCCeEEEEECCc--cHHHH--HHHHHHHHHHhCCceEccCCHHh
Confidence 1112367789999999876544332 2222124567777654433 23333 3333 3477764 467777
Q ss_pred HHHHHHhc-cCceEeecchhhChH
Q 007779 361 AKELLEDE-EIGFAYVSLREARPS 383 (590)
Q Consensus 361 a~~~Le~~-g~gf~fl~a~~~~Pa 383 (590)
..+.|++. +.-+++++.+-+.|.
T Consensus 290 l~~~l~~~~~~DlVlIDt~G~~~~ 313 (424)
T PRK05703 290 LAKALEQLRDCDVILIDTAGRSQR 313 (424)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCC
Confidence 77777653 467888888877665
No 116
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=83.66 E-value=3.3 Score=38.87 Aligned_cols=92 Identities=8% Similarity=-0.022 Sum_probs=53.1
Q ss_pred ceeEeeccccH-------HHHHHhCCceEEEeCC---CCCccccccC-CCCCcccc----ccCCCeEEECCCCCCCCCch
Q 007779 49 IRLTVKADLDS-------ALIDQLGLKESDIINP---AISSSYRSSK-LPKPNQTL----LEAQAKVCTGPTQTRPLRED 113 (590)
Q Consensus 49 ~~~~~~~~~d~-------~~~~~lg~~~~v~rnd---~~~~~~~~~~-~~~~~~~~----~~~~~~ivlspGPg~P~~~~ 113 (590)
+.+++.+.|+- ..|++.|.++.++--+ .+..+. .. ...++... ...+|.|++--||+ +....
T Consensus 2 v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~--g~~~i~~d~~~~~~~~~~~D~lvvpGG~~-~~~~~ 78 (165)
T cd03134 2 VAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKH--GYDTVTVDLTIADVDADDYDALVIPGGTN-PDKLR 78 (165)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCc--CceeecCCCChHHCCHHHCCEEEECCCCC-hhhhc
Confidence 45667777766 3456668888877544 222111 00 01111111 12469999988884 33221
Q ss_pred hhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 114 EAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 114 ~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
+....++. |++ +....|+.+ |-|-+.|+++
T Consensus 79 ~~~~~~~~-l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 79 RDPDAVAF-VRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred cCHHHHHH-HHHHHHcCCeEEEEchHHHHHHhc
Confidence 23456777 554 556699999 9999999874
No 117
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=78.34 E-value=7.3 Score=35.72 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=55.9
Q ss_pred cccceeEeeccccH-------HHHHHhCCceEEEeCCC--CCccccccCCCCCcccc----ccCCCeEEECCCCCCCCCc
Q 007779 46 GRRIRLTVKADLDS-------ALIDQLGLKESDIINPA--ISSSYRSSKLPKPNQTL----LEAQAKVCTGPTQTRPLRE 112 (590)
Q Consensus 46 ~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~--~~~~~~~~~~~~~~~~~----~~~~~~ivlspGPg~P~~~ 112 (590)
|+|+.|++.+.|+. ..|+.-|.++.++--+. +..+. .....++.+. .+.+|.|++-.|++.....
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~--g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~ 78 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSD--GKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFAL 78 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCC--CcEEecceeecCCChhhcCEEEECCCccCHHHH
Confidence 46778888888886 44555578887775332 21111 0000111111 1237899997776653211
Q ss_pred hhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 113 DEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 113 ~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
.+.....+. +++ +....||-+ |-|-..|+++
T Consensus 79 ~~~~~l~~~-l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 79 APSGRALHF-VTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred ccChHHHHH-HHHHHhcCCeEEEcCchHHHHHHc
Confidence 123456777 655 555689999 9999998873
No 118
>PRK11249 katE hydroperoxidase II; Provisional
Probab=77.73 E-value=5.5 Score=47.12 Aligned_cols=111 Identities=8% Similarity=0.017 Sum_probs=65.2
Q ss_pred ccccccccccccccccccceeEeeccccH-------HHHHHhCCceEEEeCC--CCCccccccCCCCCccccc----cCC
Q 007779 31 QASRQFSSTDGNRLIGRRIRLTVKADLDS-------ALIDQLGLKESDIINP--AISSSYRSSKLPKPNQTLL----EAQ 97 (590)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd--~~~~~~~~~~~~~~~~~~~----~~~ 97 (590)
.|+|+.-......--|||+.|++-|.+|- ..|++-|+.+.++--. .+.... .....++.++. ..|
T Consensus 582 s~als~~~~~~~~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~--G~~I~aD~t~~~~~Sv~F 659 (752)
T PRK11249 582 DPALSLYAIPDGDIKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADD--GTVLPIAATFAGAPSLTF 659 (752)
T ss_pred CcchhccCCCCCCccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCC--CCEEecceeeccCCccCC
Confidence 44455444422234688999999999987 4455558888877432 121110 00011222211 137
Q ss_pred CeEEECCCCCCCCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 98 AKVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 98 ~~ivlspGPg~P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
|+|+|-.|+..+....+.+.++++ |++ +...++|-. |-|-+.|+.+
T Consensus 660 DAVvVPGG~~~~~~L~~d~~al~f-L~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 660 DAVIVPGGKANIADLADNGDARYY-LLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred CEEEECCCchhHHHHhhCHHHHHH-HHHHHHcCCEEEEeCccHHHHHhc
Confidence 999997666555433344567888 555 444577777 9999999973
No 119
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.79 E-value=94 Score=34.74 Aligned_cols=136 Identities=15% Similarity=0.037 Sum_probs=73.8
Q ss_pred CceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHH----HhcCCCCCC--CHHHHHHHHHhc
Q 007779 295 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGASTNL--SVLQAKELLEDE 368 (590)
Q Consensus 295 ~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvL----eaLGi~i~~--s~e~a~~~Le~~ 368 (590)
++-++|++|.|+.|+-.-. ++......|.+|..-..+. -+.++ .+.| +.+|+++.. .+.++.+.+++.
T Consensus 225 vi~lvGptGvGKTTtaaKL--A~~~~~~~G~~V~Lit~Dt--~R~aA--~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~ 298 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKL--AAKYFLHMGKSVSLYTTDN--YRIAA--IEQLKRYADTMGMPFYPVKDIKKFKETLARD 298 (432)
T ss_pred EEEEECCCCCCHHHHHHHH--HHHHHHhcCCeEEEecccc--hhhhH--HHHHHHHHHhcCCCeeehHHHHHHHHHHHhC
Confidence 4668999999987643333 2222345688887766554 22333 3333 457887542 255666666666
Q ss_pred cCceEeecchhhChH-hHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEE-ecCCcchHHHHHHHHHcCCceEEEE
Q 007779 369 EIGFAYVSLREARPS-LYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAG-FYHEGYEEPLLMLMKRRGVHSGLVV 446 (590)
Q Consensus 369 g~gf~fl~a~~~~Pa-l~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~G-V~h~~~~~~~a~~l~~lG~~~alVV 446 (590)
+.-+++++.+-+.|. ...+-.+.+.+..-.+-...+ .+.|+. .+...-....++.++.+|+++.++-
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e-----------~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlT 367 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVE-----------NLLVLSSTSSYHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCe-----------EEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 678888888777543 233333444333221111111 123333 3333345556666777888666665
Q ss_pred e
Q 007779 447 K 447 (590)
Q Consensus 447 ~ 447 (590)
|
T Consensus 368 K 368 (432)
T PRK12724 368 K 368 (432)
T ss_pred c
Confidence 5
No 120
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=74.76 E-value=4.3 Score=42.88 Aligned_cols=129 Identities=10% Similarity=-0.002 Sum_probs=68.9
Q ss_pred CCCeEEECCCCCCCCCchhh---hhHHHHHHHHhcC-CCCccc-ccchHH-HHhHhCceeeccCCCCcCcccc-------
Q 007779 96 AQAKVCTGPTQTRPLREDEA---FKVLDTILRSAKG-DLKDEE-EVSKAQ-LGAFFSAMTIRANAFPEATQWS------- 162 (590)
Q Consensus 96 ~~~~ivlspGPg~P~~~~~~---g~~~~~~i~~~~~-~~PilG-CLGhQ~-i~~~~G~~v~~~~~~~~hG~~s------- 162 (590)
.+||+||..-|=.=...++. ..+.++ ++.... ..+.|. |.|-|+ |-+.||-.-.++ +.=..|.-.
T Consensus 98 ~~DglIITGAPvE~l~Fe~V~YW~El~~i-~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l-~~KlfGVf~~~~~~~~ 175 (298)
T PF04204_consen 98 KFDGLIITGAPVEQLPFEEVDYWDELTEI-FDWAKTHVTSTLFICWGAQAALYHFYGIPKYPL-PEKLFGVFEHRVLDPD 175 (298)
T ss_dssp -EEEEEE---TTTTS-GGGSTTHHHHHHH-HHHHHHHEEEEEEETHHHHHHHHHHH----EEE-EEEEEEEEEEEES-SS
T ss_pred CCCEEEEeCCCcCCCCcccCCcHHHHHHH-HHHHHHcCCcchhhhHHHHHHHHHHcCCCcccC-CCcceeceeeeccCCC
Confidence 57999998666331112222 223333 443322 479999 999998 999999988877 443444322
Q ss_pred ----CC--c--eeEEeccchhccccC--CCcEEEEe-ecC-CcEEEEEcC---CCCcccCCCchhhHHHHHHHHhhcCC
Q 007779 163 ----EG--E--RRAMNTFWPLLMRAL--PPDVIFIA-DPE-GSIMGGGGS---IGPHYSGNDPREMRLVGALREVLAGG 226 (590)
Q Consensus 163 ----~~--~--~~~~~ryHsl~v~~~--p~~l~v~a-~~~-g~im~~~h~---~gvQfHPEs~~~m~L~~~L~kl~~G~ 226 (590)
.| . ...-+||-....+.+ .++|+|+| +++ |.-|...-. .=+|-|||=....-..++.|.+..|.
T Consensus 176 ~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r~vfi~GH~EYd~~TL~~EY~RD~~~gl 254 (298)
T PF04204_consen 176 HPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGRQVFITGHPEYDADTLAKEYRRDLAKGL 254 (298)
T ss_dssp -GGGTT--SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCTEEEE-S-TT--TTHHHHHHHHHHHCT-
T ss_pred ChhhcCCCccccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCCEEEEeCCCccChhHHHHHHHHHHhCCC
Confidence 12 1 344466666655555 66899999 655 544443222 66788999755554678888888885
No 121
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=72.38 E-value=4.3 Score=40.46 Aligned_cols=72 Identities=11% Similarity=0.024 Sum_probs=42.5
Q ss_pred HHHHHh-CCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc----hhhhhHHHHHHHH-hcCCCCcc
Q 007779 60 ALIDQL-GLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE----DEAFKVLDTILRS-AKGDLKDE 133 (590)
Q Consensus 60 ~~~~~l-g~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~----~~~g~~~~~~i~~-~~~~~Pil 133 (590)
+.++.+ |+++.++.- ++.++. ...+...|+|+++. |+.... .+.+ ..+. |++ +....|++
T Consensus 53 ~a~~~l~G~~~~~~~~--~~~~~~--------~~~l~~ad~I~l~G--G~~~~~~~~l~~~~-l~~~-l~~~~~~g~~i~ 118 (212)
T cd03146 53 AAFESLRGVEVSHLHL--FDTEDP--------LDALLEADVIYVGG--GNTFNLLAQWREHG-LDAI-LKAALERGVVYI 118 (212)
T ss_pred HHHhhccCcEEEEEec--cCcccH--------HHHHhcCCEEEECC--chHHHHHHHHHHcC-HHHH-HHHHHHCCCEEE
Confidence 667888 887776632 111100 11144558888876 566411 1111 3444 554 44579999
Q ss_pred c-ccchHHHHhHh
Q 007779 134 E-EVSKAQLGAFF 145 (590)
Q Consensus 134 G-CLGhQ~i~~~~ 145 (590)
| |.|.|+++...
T Consensus 119 G~SAGa~i~~~~~ 131 (212)
T cd03146 119 GWSAGSNCWFPSI 131 (212)
T ss_pred EECHhHHhhCCCc
Confidence 9 99999999863
No 122
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=71.28 E-value=7.1 Score=39.63 Aligned_cols=72 Identities=15% Similarity=0.003 Sum_probs=40.4
Q ss_pred ccH-HHHHHhCCceE-EEeCCCCCccccccCCCCCcccccc-CCCeEEECCCCC--CCCCc---hhhhhHHHHHHHHhcC
Q 007779 57 LDS-ALIDQLGLKES-DIINPAISSSYRSSKLPKPNQTLLE-AQAKVCTGPTQT--RPLRE---DEAFKVLDTILRSAKG 128 (590)
Q Consensus 57 ~d~-~~~~~lg~~~~-v~rnd~~~~~~~~~~~~~~~~~~~~-~~~~ivlspGPg--~P~~~---~~~g~~~~~~i~~~~~ 128 (590)
.|. .-++.+|.++. |+.+|. . ++ .+|+||+-.|=. +=... .....+++-+.+.+..
T Consensus 17 ~d~~~A~~~aG~~~~~V~~~d~-~---------------~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~ 80 (231)
T COG0047 17 YDMAAAFERAGFEAEDVWHSDL-L---------------LGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEK 80 (231)
T ss_pred HHHHHHHHHcCCCceEEEeeec-c---------------cCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHC
Confidence 455 44677788655 555542 1 22 357788755522 11100 0112345552444555
Q ss_pred CCCccc-ccchHHHHhH
Q 007779 129 DLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 129 ~~PilG-CLGhQ~i~~~ 144 (590)
..|+|| |=|+|.|.++
T Consensus 81 g~~vLGICNGfQiL~e~ 97 (231)
T COG0047 81 GKPVLGICNGFQILSEA 97 (231)
T ss_pred CCeEEEEcchhHHHHHc
Confidence 699999 9999999854
No 123
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.18 E-value=1.2e+02 Score=33.96 Aligned_cols=134 Identities=8% Similarity=0.011 Sum_probs=76.2
Q ss_pred CCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHH---hcCCCC--CCCHHHHHHHHHhc
Q 007779 294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLK---FMGAST--NLSVLQAKELLEDE 368 (590)
Q Consensus 294 ~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLe---aLGi~i--~~s~e~a~~~Le~~ 368 (590)
..+-.+|.+|.|+.|+-.-. ++ -+...|.+|..--.+ +-+.|+ ..++-+ .+|+++ ..++.++.+.++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKL--A~-~L~~~GkkVglI~aD--t~RiaA-vEQLk~yae~lgipv~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKM--AW-QFHGKKKTVGFITTD--HSRIGT-VQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 315 (436)
T ss_pred cEEEEECCCCCcHHHHHHHH--HH-HHHHcCCcEEEEecC--CcchHH-HHHHHHHhhhcCCcEEecCCHHHHHHHHHHH
Confidence 35778999999987643322 22 234668888765544 333344 133333 478874 36888888888543
Q ss_pred ----cCceEeecchhhChH-hHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEec-CCcchHHHHHHHHHcCCce
Q 007779 369 ----EIGFAYVSLREARPS-LYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFY-HEGYEEPLLMLMKRRGVHS 442 (590)
Q Consensus 369 ----g~gf~fl~a~~~~Pa-l~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~-h~~~~~~~a~~l~~lG~~~ 442 (590)
+.-+++++.+--.+. ...+..+++.+....|-.+ +.|+... ...-....++.+..+++.+
T Consensus 316 k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~Pdev--------------lLVLsATtk~~d~~~i~~~F~~~~idg 381 (436)
T PRK11889 316 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYI--------------CLTLSASMKSKDMIEIITNFKDIHIDG 381 (436)
T ss_pred HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeE--------------EEEECCccChHHHHHHHHHhcCCCCCE
Confidence 457888888765553 3335555555554333221 3444432 2222344566666778855
Q ss_pred EEEEe
Q 007779 443 GLVVK 447 (590)
Q Consensus 443 alVV~ 447 (590)
.++-|
T Consensus 382 lI~TK 386 (436)
T PRK11889 382 IVFTK 386 (436)
T ss_pred EEEEc
Confidence 55554
No 124
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=65.72 E-value=8.8 Score=42.78 Aligned_cols=71 Identities=11% Similarity=-0.043 Sum_probs=42.7
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCC-CCC-CCchhhhhHHHHHHHHh-cCCCCccc-c
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQ-TRP-LREDEAFKVLDTILRSA-KGDLKDEE-E 135 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGP-g~P-~~~~~~g~~~~~~i~~~-~~~~PilG-C 135 (590)
..+++.|+++..++-- +.++ +..+|+|+|..|. +.- ......-...+. |+++ ....||+| |
T Consensus 265 ~~L~~~g~~~~~~~~~--~~~~------------l~~~D~lilpGG~~~~~~~~l~~~~~~~~~-i~~~~~~g~~i~aiC 329 (451)
T PRK01077 265 ELLRAAGAELVFFSPL--ADEA------------LPDCDGLYLGGGYPELFAAELAANTSMRAS-IRAAAAAGKPIYAEC 329 (451)
T ss_pred HHHHHCCCEEEEeCCc--CCCC------------CCCCCEEEeCCCchhhHHHHHhhCchhHHH-HHHHHHcCCCEEEEc
Confidence 4466778777665421 0110 2345889998885 221 111111224566 5554 45689999 9
Q ss_pred cchHHHHhHh
Q 007779 136 VSKAQLGAFF 145 (590)
Q Consensus 136 LGhQ~i~~~~ 145 (590)
=|.|.|+..+
T Consensus 330 gG~~~L~~~i 339 (451)
T PRK01077 330 GGLMYLGESL 339 (451)
T ss_pred HHHHHHHhhh
Confidence 9999999998
No 125
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=62.57 E-value=1.1e+02 Score=31.82 Aligned_cols=148 Identities=18% Similarity=0.139 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCCC--CCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHhhhhcCCCCC--
Q 007779 215 LVGALREVLAGGH--LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRE-LKAYCLAFDDELGPPP-- 289 (590)
Q Consensus 215 L~~~L~kl~~G~~--Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eE-lag~~~A~~~~~~~~~-- 289 (590)
+++.|..+..+.. --.++...+.+.+. +..+++.-.-.++--++... +.++ ...+.+.+.+.....+
T Consensus 116 lk~~l~~~~~~~~~~~~~~~l~~l~~~L~-------~~gv~~~la~~L~~~l~~~~-~~~~~~~~~~~~l~~~l~~~~~~ 187 (282)
T TIGR03499 116 LRELLERLLAGLAWLQRDPEGAKLLERLL-------RAGVSPELARELLEKLPERA-DAEDAWRWLREALEKMLPVKPEE 187 (282)
T ss_pred HHHHHHHHHHhhhhcccCHHHHHHHHHHH-------HCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHhccCCcc
Confidence 7777777665421 11245566777777 67788888888887776432 3333 3445555555443111
Q ss_pred --C-CCCCCceEEccCCCCCCccccchHHHHHHHhc-CCCcEEeecCCCCCCCCCCCHHHHH----HhcCCCC--CCCHH
Q 007779 290 --V-ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSC-YGESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSVL 359 (590)
Q Consensus 290 --~-~~~~~vD~~GtGgDG~~t~niST~laA~vlAa-~Gv~V~kHGnr~vtsk~Gst~aDvL----eaLGi~i--~~s~e 359 (590)
+ ....++-++|+.|.|+.|+-.-. ++..... .+.+|..--.+. -+.|. .+-| +.+|+++ ..++.
T Consensus 188 ~~~~~~~~vi~~vGptGvGKTTt~~kL--a~~~~~~~g~~~V~li~~D~--~r~~a--~eql~~~~~~~~~p~~~~~~~~ 261 (282)
T TIGR03499 188 DEILEQGGVIALVGPTGVGKTTTLAKL--AARFVLEHGNKKVALITTDT--YRIGA--VEQLKTYAKILGVPVKVARDPK 261 (282)
T ss_pred ccccCCCeEEEEECCCCCCHHHHHHHH--HHHHHHHcCCCeEEEEECCc--cchhH--HHHHHHHHHHhCCceeccCCHH
Confidence 1 11236778999999987643322 2222222 237777766553 22333 3333 3367764 45677
Q ss_pred HHHHHHHhcc-CceEeec
Q 007779 360 QAKELLEDEE-IGFAYVS 376 (590)
Q Consensus 360 ~a~~~Le~~g-~gf~fl~ 376 (590)
++.+.+++.. .-+++++
T Consensus 262 ~l~~~l~~~~~~d~vliD 279 (282)
T TIGR03499 262 ELRKALDRLRDKDLILID 279 (282)
T ss_pred HHHHHHHHccCCCEEEEe
Confidence 7777777632 3444443
No 126
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=62.17 E-value=29 Score=34.96 Aligned_cols=52 Identities=10% Similarity=-0.103 Sum_probs=36.0
Q ss_pred ccCCCeEEECCCCCCCCCc----------hhhhhHHHHHHHHhc-CCCCccc-ccchHHHHhHhC
Q 007779 94 LEAQAKVCTGPTQTRPLRE----------DEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAFFS 146 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~----------~~~g~~~~~~i~~~~-~~~PilG-CLGhQ~i~~~~G 146 (590)
.+.||+|+|-.|-|.+.+. .....+.++ ++++. .++|+-. |=|-+.|+.+.|
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~l-v~~f~~~gK~vaAIChgp~iL~~~~~ 146 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKAL-VRAFHQAGKPIGFICIAPAMLPKILG 146 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHH-HHHHHHCCCEEEEECHHHHHHHHHhc
Confidence 4468999998886643211 123447777 66654 4689999 999999988753
No 127
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.12 E-value=34 Score=34.42 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=55.1
Q ss_pred CCCcccC-CCchh--hH-HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 007779 201 IGPHYSG-NDPRE--MR-LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKA 276 (590)
Q Consensus 201 ~gvQfHP-Es~~~--m~-L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag 276 (590)
++.|||| +.+.. .. ++-.|-.-..-.+++..|-..+|..+-. .| .|.|..+||..--.+=.+++||+.
T Consensus 96 ~~~~~~p~~~~d~~s~~ll~AmIaAAkaDGhIDe~ERa~I~~~l~e------sG--~d~e~~~~le~El~~PlD~~~ia~ 167 (225)
T COG2979 96 ADSQFTPLATEDEFSLTLLRAMIAAAKADGHIDEKERARIMQKLQE------SG--VDPEAQAFLEQELEQPLDPDEIAA 167 (225)
T ss_pred ccCCCCCccccchHHHHHHHHHHHHHhhcCCcCHHHHHHHHHHHHH------cC--CCHHHHHHHHHHHhCCCCHHHHHH
Confidence 6789999 66444 33 5555555666779999999999988872 33 466888999998888889999998
Q ss_pred HHHh
Q 007779 277 YCLA 280 (590)
Q Consensus 277 ~~~A 280 (590)
+++-
T Consensus 168 ~a~~ 171 (225)
T COG2979 168 AARN 171 (225)
T ss_pred HhcC
Confidence 8753
No 128
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=56.78 E-value=15 Score=40.91 Aligned_cols=69 Identities=12% Similarity=-0.034 Sum_probs=41.8
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchh-h---hhHHHHHHHHh-cCCCCccc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDE-A---FKVLDTILRSA-KGDLKDEE 134 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~-~---g~~~~~~i~~~-~~~~PilG 134 (590)
..|++.|+++.-++.-. .++ ++..|+|+|..|- |+.... . -...+. |+++ ....|++|
T Consensus 264 ~~L~~~g~~~~~~~~~~--d~~------------l~~~d~l~ipGG~--~~~~~~~l~~~~~~~~~-i~~~~~~G~pv~g 326 (449)
T TIGR00379 264 DALTHNAAELVPFSPLE--DTE------------LPDVDAVYIGGGF--PELFAEELSQNQALRDS-IKTFIHQGLPIYG 326 (449)
T ss_pred HHHHHCCCEEEEECCcc--CCC------------CCCCCEEEeCCcH--HHHHHHHHHhhhHHHHH-HHHHHHcCCCEEE
Confidence 44677787776664310 000 2244889998775 532111 1 113455 4444 45689999
Q ss_pred -ccchHHHHhHh
Q 007779 135 -EVSKAQLGAFF 145 (590)
Q Consensus 135 -CLGhQ~i~~~~ 145 (590)
|=|.|.|++..
T Consensus 327 ~CgG~~~L~~~i 338 (449)
T TIGR00379 327 ECGGLMYLSQSL 338 (449)
T ss_pred EcHHHHHHHhhh
Confidence 99999999988
No 129
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.45 E-value=1.4e+02 Score=35.75 Aligned_cols=164 Identities=16% Similarity=0.088 Sum_probs=92.9
Q ss_pred HHHHHHHhhcC------C-CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH-hhhhcCC
Q 007779 215 LVGALREVLAG------G-HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCL-AFDDELG 286 (590)
Q Consensus 215 L~~~L~kl~~G------~-~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~-A~~~~~~ 286 (590)
+++.|.+...+ + .........+.+.++ +-++++.-.-.|+--+. ++.+.+++..++. .+.+...
T Consensus 102 lk~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~Ll-------~~dv~~~la~~l~~~l~-~~~~~~~~~~~l~~~L~~~l~ 173 (767)
T PRK14723 102 MRGMLERQLAGLLWAAGEVAGRDPLRASLFRWLL-------GAGFSGQLARALLERLP-VGYDRPAAMAWIRNELATHLP 173 (767)
T ss_pred HHHHHHHHHHHHhhhccccccChHHHHHHHHHHH-------HCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhh
Confidence 55665553322 1 234333455667777 77888877777777664 3445666544443 3333221
Q ss_pred CCC-----CCCCCCceEEccCCCCCCccccchHHHHHHHhcCC-CcEEeecCCCCCCCCCCCHHHHHH----hcCCCCC-
Q 007779 287 PPP-----VADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYG-ESCLLHGAEWMPPKGGVTEEQMLK----FMGASTN- 355 (590)
Q Consensus 287 ~~~-----~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~G-v~V~kHGnr~vtsk~Gst~aDvLe----aLGi~i~- 355 (590)
... +....++-.+|+.|.||+|+-.- +++......| .+|..-..+ +.+-|. .+-|+ .+|+++.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaK--LA~~~~~~~G~kkV~lit~D--t~RigA--~eQL~~~a~~~gvpv~~ 247 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAK--LAARCVAREGADQLALLTTD--SFRIGA--LEQLRIYGRILGVPVHA 247 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHH--HHhhHHHHcCCCeEEEecCc--ccchHH--HHHHHHHHHhCCCCccc
Confidence 111 11224677899999998753221 1333323344 466654433 345555 45444 5787753
Q ss_pred -CCHHHHHHHHHhc-cCceEeecchhhChHhHHHHhhhc
Q 007779 356 -LSVLQAKELLEDE-EIGFAYVSLREARPSLYSLIGLRE 392 (590)
Q Consensus 356 -~s~e~a~~~Le~~-g~gf~fl~a~~~~Pal~~l~~vR~ 392 (590)
.+++++.+.+++. +.-+++++.+-..|....++..-+
T Consensus 248 ~~~~~~l~~al~~~~~~D~VLIDTAGRs~~d~~l~eel~ 286 (767)
T PRK14723 248 VKDAADLRFALAALGDKHLVLIDTVGMSQRDRNVSEQIA 286 (767)
T ss_pred cCCHHHHHHHHHHhcCCCEEEEeCCCCCccCHHHHHHHH
Confidence 5888888888765 356788988887766555444333
No 130
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=55.44 E-value=7.4 Score=43.76 Aligned_cols=49 Identities=12% Similarity=-0.071 Sum_probs=30.8
Q ss_pred ccCCCeEEECCCCCCCCCch--h--hhhHHHHHHHHh-cCCCCccc-ccchHHHHhHh
Q 007779 94 LEAQAKVCTGPTQTRPLRED--E--AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFF 145 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~--~--~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~ 145 (590)
+...|+|+|..|- |...+ . .....+. |+++ ....||+| |.|+|.|+..+
T Consensus 282 l~~~d~lilpGg~--~~~~~~~~l~~~~~~~~-i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 282 LTGCDAVIIPGSK--STIADLYALKQSGFAEE-ILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred cccCCEEEECCcc--hHHHHHHHHHhcChHHH-HHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 3345888887665 43111 0 0113455 5554 45689999 99999999976
No 131
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=55.22 E-value=1.8e+02 Score=30.94 Aligned_cols=156 Identities=11% Similarity=0.077 Sum_probs=88.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcC--C---CHHHHHHHHH-hhhhcCC--
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR--E---TDRELKAYCL-AFDDELG-- 286 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~Kg--E---T~eElag~~~-A~~~~~~-- 286 (590)
+.+.++++..++.++.+-..++...++ .-++++.-.-.++-.++-+. + +.+++..++. .+.+...
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~l~~~L~-------~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 103 (318)
T PRK10416 31 FGEGINGLFAKKKIDEDLLEELEELLI-------EADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELAEILEPV 103 (318)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCcC
Confidence 566677777778899888888888888 78888888888888776542 1 4555544333 4444332
Q ss_pred --CCCC--CCCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCC--CHHHHHHhcCCCCC-----
Q 007779 287 --PPPV--ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGV--TEEQMLKFMGASTN----- 355 (590)
Q Consensus 287 --~~~~--~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gs--t~aDvLeaLGi~i~----- 355 (590)
++.. ....++-.+|++|.|+.|+-... ++ .++..|.+|..-+.+-. +.|. .+...-+..|+++-
T Consensus 104 ~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kL--A~-~l~~~g~~V~Li~~D~~--r~~a~eql~~~a~~~~i~~~~~~~~ 178 (318)
T PRK10416 104 EKPLNIEEKKPFVILVVGVNGVGKTTTIGKL--AH-KYKAQGKKVLLAAGDTF--RAAAIEQLQVWGERVGVPVIAQKEG 178 (318)
T ss_pred CccccccCCCCeEEEEECCCCCcHHHHHHHH--HH-HHHhcCCeEEEEecCcc--chhhHHHHHHHHHHcCceEEEeCCC
Confidence 1111 11236778999999986643322 23 33466888888776542 2221 01122344565531
Q ss_pred CCHHH-HHHHH---HhccCceEeecchhhCh
Q 007779 356 LSVLQ-AKELL---EDEEIGFAYVSLREARP 382 (590)
Q Consensus 356 ~s~e~-a~~~L---e~~g~gf~fl~a~~~~P 382 (590)
.+|.. +.+.+ ...+.-++++..|--+|
T Consensus 179 ~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 179 ADPASVAFDAIQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 22321 11221 23356777777766554
No 132
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=54.81 E-value=37 Score=36.79 Aligned_cols=101 Identities=17% Similarity=0.068 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCC----CCcccc---chH--HHHH
Q 007779 255 SLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDG----NTRFFR---STL--FVAA 318 (590)
Q Consensus 255 ~qigAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG----~~t~ni---ST~--laA~ 318 (590)
.|..++++|....|++ .+++....++|++....+...+ ..+-+-|.|..+ .+.+++ +++ +.+.
T Consensus 13 ~~~~~L~~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~-~~~~v~g~~~~~~~~~~~~~~~g~s~~~~~~l~a 91 (408)
T cd01554 13 ISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKD-GVITIQGVGMAGLKAPQNALNLGNSGTAIRLISG 91 (408)
T ss_pred HHHHHHHHHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecC-CEEEEEecCCCCCCCCCceEEccCccHHHHHHHH
Confidence 3446777777777765 5788889999998876654322 223333443321 112222 121 2333
Q ss_pred HHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCC
Q 007779 319 VRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (590)
Q Consensus 319 vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~ 356 (590)
+++..+.+|...|......+.-..+.|+|++||+++..
T Consensus 92 ~~~~~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~ 129 (408)
T cd01554 92 VLAGADFEVELFGDDSLSKRPMDRVTLPLKKMGASISG 129 (408)
T ss_pred HHHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEEE
Confidence 33444568888998887766555568999999998753
No 133
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=54.47 E-value=29 Score=34.96 Aligned_cols=52 Identities=6% Similarity=-0.106 Sum_probs=36.2
Q ss_pred ccCCCeEEECCCCCCCCCchh----------hhhHHHHHHHHh-cCCCCccc-ccchHHHHhHhC
Q 007779 94 LEAQAKVCTGPTQTRPLREDE----------AFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFS 146 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~----------~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~G 146 (590)
.+.||+|+|-.|.|.+.+..| ...+.++ ++++ ..++|+.+ |=|-+.|+.+.+
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~l-v~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERL-VREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHH-HHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 346899999988764432211 2346777 6664 44689999 999999988764
No 134
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=53.17 E-value=8 Score=40.10 Aligned_cols=73 Identities=10% Similarity=-0.078 Sum_probs=38.9
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhh-----------HHHHHHHH-hc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFK-----------VLDTILRS-AK 127 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~-----------~~~~~i~~-~~ 127 (590)
.-|+..|.++..+.-..+.... ..++.+++|||..|=+.=+.. -+|. +.+. |++ +.
T Consensus 20 ~A~~~aG~~~~~v~~~dl~~~~----------~~l~~~~~lvipGGFS~gD~l-~sg~~~a~~~~~~~~~~~~-i~~f~~ 87 (259)
T PF13507_consen 20 AAFENAGFEPEIVHINDLLSGE----------SDLDDFDGLVIPGGFSYGDYL-RSGAIAAARLLFNSPLMDA-IREFLE 87 (259)
T ss_dssp HHHHCTT-EEEEEECCHHHTTS------------GCC-SEEEE-EE-GGGGTT-STTHHHHHHHCCSCCCHHH-HHHHHH
T ss_pred HHHHHcCCCceEEEEEeccccc----------CchhhCcEEEECCccCccccc-hHHHHHHHHhhccHHHHHH-HHHHHh
Confidence 3466668877755433221110 116678999998776542211 1222 2455 444 44
Q ss_pred C-CCCccc-ccchHHHHhH
Q 007779 128 G-DLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 128 ~-~~PilG-CLGhQ~i~~~ 144 (590)
. ..|+|| |=|+|+|.+.
T Consensus 88 ~~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 88 RPGGFVLGICNGFQILVEL 106 (259)
T ss_dssp CTT-EEEEECHHHHHHCCC
T ss_pred cCCCeEEEEchHhHHHHHh
Confidence 4 699999 9999999886
No 135
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=52.92 E-value=22 Score=36.17 Aligned_cols=98 Identities=8% Similarity=0.009 Sum_probs=58.8
Q ss_pred cccceeEeeccccH-HHHHHhCCceEEEeCC-CCCcc--------------cc----c-c---C--C-CCCccccccCCC
Q 007779 46 GRRIRLTVKADLDS-ALIDQLGLKESDIINP-AISSS--------------YR----S-S---K--L-PKPNQTLLEAQA 98 (590)
Q Consensus 46 ~~~~~~~~~~~~d~-~~~~~lg~~~~v~rnd-~~~~~--------------~~----~-~---~--~-~~~~~~~~~~~~ 98 (590)
|.+++.++...+-+ .+|++-|.+|++.--. ..... .+ . . . . .....-..+.||
T Consensus 17 g~~tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYD 96 (231)
T cd03147 17 GKNTGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYG 96 (231)
T ss_pred CCccccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCc
Confidence 45677777777776 7788889888886421 10000 00 0 0 0 0 000111144689
Q ss_pred eEEECCCCCCCCCchhhhhHHHHHHHHhc-CCCCccc-ccchHHHHhH
Q 007779 99 KVCTGPTQTRPLREDEAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 99 ~ivlspGPg~P~~~~~~g~~~~~~i~~~~-~~~PilG-CLGhQ~i~~~ 144 (590)
+|+|-.|.|...+..+...+.++ ++++. ...||-. |=|=++|..+
T Consensus 97 av~iPGG~g~~~dl~~~~~l~~l-l~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 97 IFFVAGGHGTLFDFPHATNLQKI-AQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred EEEECCCCchhhhcccCHHHHHH-HHHHHHcCCEEEEEChHHHHHHhh
Confidence 99999997754433333446677 66654 4588888 9999999887
No 136
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.94 E-value=1.1e+02 Score=33.96 Aligned_cols=139 Identities=7% Similarity=0.043 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhc--C---CCHHHHHHHHHhhhhcCCCCC----CCCCCCceEEccCC
Q 007779 233 VQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--R---ETDRELKAYCLAFDDELGPPP----VADVKSLTHYGEPY 303 (590)
Q Consensus 233 a~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~K--g---ET~eElag~~~A~~~~~~~~~----~~~~~~vD~~GtGg 303 (590)
.+++.+.+. ..++++.-+-.++-.++.. . .+.+++...+........+.+ ......+-++|+.|
T Consensus 144 ~~~~~~~L~-------~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptG 216 (407)
T PRK12726 144 NSDFVKFLK-------GRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTG 216 (407)
T ss_pred cHHHHHHHH-------HcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCC
Confidence 345666666 6778888888888777544 2 245566555544433333221 11234677899999
Q ss_pred CCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHH----hcCCCC--CCCHHHHHHHHHhc----cCceE
Q 007779 304 DGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLK----FMGAST--NLSVLQAKELLEDE----EIGFA 373 (590)
Q Consensus 304 DG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLe----aLGi~i--~~s~e~a~~~Le~~----g~gf~ 373 (590)
.|+.|+-.-. ++ .+...|.+|..--.+. -+.|. .+-|. .+|+++ ..+|+++.+.++.. +.-++
T Consensus 217 vGKTTt~akL--A~-~l~~~g~~V~lItaDt--yR~gA--veQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~V 289 (407)
T PRK12726 217 VGKTTTLVKL--GW-QLLKQNRTVGFITTDT--FRSGA--VEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHI 289 (407)
T ss_pred CCHHHHHHHH--HH-HHHHcCCeEEEEeCCc--cCccH--HHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEE
Confidence 9987533222 22 2344588888766553 44554 34444 378774 46888888887754 35778
Q ss_pred eecchhhChHhH
Q 007779 374 YVSLREARPSLY 385 (590)
Q Consensus 374 fl~a~~~~Pal~ 385 (590)
+++.+-.+|...
T Consensus 290 LIDTAGr~~~d~ 301 (407)
T PRK12726 290 LIDTVGRNYLAE 301 (407)
T ss_pred EEECCCCCccCH
Confidence 888887766433
No 137
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=51.51 E-value=2.7e+02 Score=31.22 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=86.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHh--cCC------CH-HH-HHHHHHhhhh
Q 007779 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NRE------TD-RE-LKAYCLAFDD 283 (590)
Q Consensus 214 ~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~--KgE------T~-eE-lag~~~A~~~ 283 (590)
+|.+.++++.....||.+...++++.|-..++ +-+++....-.|+-.++- .|+ ++ +. +..+.+.+.+
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl---~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 80 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALL---QADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHH
Confidence 47788999887778999866655544432111 577888888888887753 332 22 22 2333333333
Q ss_pred cCCCC----CCC-CCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHH----HhcCCCC
Q 007779 284 ELGPP----PVA-DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGAST 354 (590)
Q Consensus 284 ~~~~~----~~~-~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvL----eaLGi~i 354 (590)
..... ..+ .+.++-.||.+|.|++|+-... + ..+...|.+|+.=..+...+ +. .+-| +.+|+++
T Consensus 81 ~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakL--A-~~L~~~g~kV~lV~~D~~R~--aa--~eQL~~la~~~gvp~ 153 (437)
T PRK00771 81 LLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKL--A-RYFKKKGLKVGLVAADTYRP--AA--YDQLKQLAEKIGVPF 153 (437)
T ss_pred HhCCCccccccCCCCeEEEEECCCCCcHHHHHHHH--H-HHHHHcCCeEEEecCCCCCH--HH--HHHHHHHHHHcCCcE
Confidence 22211 111 1235778999999987644322 2 23456788888765554322 32 3433 4467764
Q ss_pred CC-----CHHH-HHHHHHhc-cCceEeecchhhChH
Q 007779 355 NL-----SVLQ-AKELLEDE-EIGFAYVSLREARPS 383 (590)
Q Consensus 355 ~~-----s~e~-a~~~Le~~-g~gf~fl~a~~~~Pa 383 (590)
.. ++.+ +.+.++.. ..-++.++.+--++.
T Consensus 154 ~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 154 YGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHAL 189 (437)
T ss_pred EecCCccCHHHHHHHHHHHhhcCCEEEEECCCcccc
Confidence 32 2222 33344331 135666776654443
No 138
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=51.30 E-value=15 Score=34.83 Aligned_cols=49 Identities=10% Similarity=-0.101 Sum_probs=32.3
Q ss_pred cCCCeEEECCCCCCCCCchhh----hhHHHHHHHH-hcCCCCccc-ccchHHHHhHhC
Q 007779 95 EAQAKVCTGPTQTRPLREDEA----FKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFS 146 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~----g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~~G 146 (590)
+..|+|+|+.|- |+..+.. -.+.+- |++ .....||+| |=|.|.|++..=
T Consensus 6 ~~~D~i~lpGg~--pe~~~~~l~~~~~~~~~-I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 6 PDADGIYLPGGY--PELFALELSRNRGLKEA-IREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCEEEECCCc--HHHHHHHHHHHhCHHHH-HHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 355889997654 6421111 124455 454 444599999 999999999874
No 139
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=50.55 E-value=22 Score=44.89 Aligned_cols=83 Identities=8% Similarity=0.022 Sum_probs=48.9
Q ss_pred ccceeEeec----cccH---HHHHHhCCceE-EEeCCCCCccccccCCCCCccccccCCCeEEECCCC--CCCCCchhhh
Q 007779 47 RRIRLTVKA----DLDS---ALIDQLGLKES-DIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQ--TRPLREDEAF 116 (590)
Q Consensus 47 ~~~~~~~~~----~~d~---~~~~~lg~~~~-v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGP--g~P~~~~~~g 116 (590)
.|+++.++- |=|- .-|+..|.++. |.-||-.+-. ..++.+++|++..|= |+-. .+|
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~-----------~~L~~~~glv~pGGFSyGD~l---~sg 1101 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGR-----------ISLDDFRGIVFVGGFSYADVL---DSA 1101 (1307)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeeccccc-----------ccccceeEEEEcCcCCCcccc---chH
Confidence 355666653 3333 34566687655 4445421110 115677899998886 4433 244
Q ss_pred -----------hHHHHHHHHhc--CCCCccc-ccchHHHHhH
Q 007779 117 -----------KVLDTILRSAK--GDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 117 -----------~~~~~~i~~~~--~~~PilG-CLGhQ~i~~~ 144 (590)
.+.+- ++.|. ...++|| |-|+|+|.+.
T Consensus 1102 ~~wa~~i~~n~~~~~~-~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1102 KGWAGSIRFNEPLLQQ-FQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHHHHhChHHHHH-HHHHHhCCCceEEEEcHHHHHHHHc
Confidence 23444 44443 3599999 9999999886
No 140
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=49.00 E-value=33 Score=32.44 Aligned_cols=49 Identities=12% Similarity=-0.056 Sum_probs=32.2
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+.+|.|+|..|++.+....+.....+. ++++ ....++-+ |=|-..|+.+
T Consensus 62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~-l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 62 EEFDAIVLPGGMPGAENLRNSKLLLNI-LKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred ccCCEEEECCCchHHHHHhhCHHHHHH-HHHHHHCCCEEEEEChhHHHHHhc
Confidence 357999996665322211123456777 6665 45688888 9999999875
No 141
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=47.89 E-value=47 Score=32.20 Aligned_cols=95 Identities=9% Similarity=-0.027 Sum_probs=53.1
Q ss_pred cceeEeeccccH-------HHHHHhCCceEEEeCCC-----CCccccccCCCCCcccc----ccCCCeEEECCCCCCCCC
Q 007779 48 RIRLTVKADLDS-------ALIDQLGLKESDIINPA-----ISSSYRSSKLPKPNQTL----LEAQAKVCTGPTQTRPLR 111 (590)
Q Consensus 48 ~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~-----~~~~~~~~~~~~~~~~~----~~~~~~ivlspGPg~P~~ 111 (590)
|+-|++.+.|.- ..|++.|.++.++.... ++.+. .....++..+ .+.+|.|++-.|++.+..
T Consensus 4 ~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~--G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~ 81 (196)
T PRK11574 4 SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSR--GVKLLADAPLVEVADGDFDVIVLPGGIKGAEC 81 (196)
T ss_pred eEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCC--CCEEeCCCCHHHCCCCCCCEEEECCCCchhhh
Confidence 456677777765 55677788888765421 21110 0001111111 235799999666544432
Q ss_pred chhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhHh
Q 007779 112 EDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFF 145 (590)
Q Consensus 112 ~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~ 145 (590)
..+...+.+. ++++ ....++-+ |=|-..|....
T Consensus 82 ~~~~~~l~~~-L~~~~~~g~~v~aic~G~~~ll~~~ 116 (196)
T PRK11574 82 FRDSPLLVET-VRQFHRSGRIVAAICAAPATVLVPH 116 (196)
T ss_pred hhhCHHHHHH-HHHHHHCCCEEEEECHhHHHHHHhC
Confidence 2233446777 6665 44689999 99998765433
No 142
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=45.31 E-value=47 Score=36.26 Aligned_cols=98 Identities=8% Similarity=0.021 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCC-------CccccchHHHHHHHhcC
Q 007779 258 SAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN-------TRFFRSTLFVAAVRSCY 323 (590)
Q Consensus 258 gAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~-------~t~niST~laA~vlAa~ 323 (590)
.++++|...+|.| .+++....+++++....+...+...+-+-|++..+. .+..-++.+++.+++..
T Consensus 27 r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~~~~~i~g~~~~~~~~~~~~~~~s~~s~~~l~~~~~~~ 106 (417)
T PRK09369 27 PILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGNGTVTIDASNINNTEAPYELVKKMRASILVLGPLLARF 106 (417)
T ss_pred HHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCCCEEEEECCCCCCCcCCHHHHhhhhhHHHHHHHHhccC
Confidence 4555555566664 778999999999877554332212233333332111 01111222344455543
Q ss_pred -CCcEEeecCCCCCCCCCCCHHHHHHhcCCCCC
Q 007779 324 -GESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (590)
Q Consensus 324 -Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~ 355 (590)
+.++...|+..+.++--..+.+.|++||++++
T Consensus 107 ~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 139 (417)
T PRK09369 107 GEAKVSLPGGCAIGARPVDLHLKGLEALGAEIE 139 (417)
T ss_pred CceEEEecCCCccCCCchHHHHHHHHHCCCEEE
Confidence 45899999888877766666888999999874
No 143
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=44.93 E-value=50 Score=35.96 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCC-------ccccchHHHHHHHh
Q 007779 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT-------RFFRSTLFVAAVRS 321 (590)
Q Consensus 256 qigAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~-------t~niST~laA~vlA 321 (590)
+.++++.|...+|.| .+++....++++.....+... ...+-+.|++..+.. +..-|+.|++.+++
T Consensus 25 ~~~ll~aa~la~g~s~i~n~~~~~dv~~t~~~l~~lG~~i~~~-~~~~~I~g~~~~~~~~~~~~~~~~~as~~~~~~~~~ 103 (417)
T PRK12830 25 AVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRD-GDTLEIDPTGIQSMPLPNGKVKSLRASYYFMGALLG 103 (417)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHCCCEEEEc-CCEEEEECCCCCCCCCCHHHHhhchhHHHHHHHHhc
Confidence 455666665667765 678888899999877655422 222334343222211 12333434555555
Q ss_pred cCC-CcEEeecCCCCCCCCCCCHHHHHHhcCCCCC
Q 007779 322 CYG-ESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (590)
Q Consensus 322 a~G-v~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~ 355 (590)
..| +++...|...+..+.-....+.|+.||+.++
T Consensus 104 ~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 138 (417)
T PRK12830 104 RFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVT 138 (417)
T ss_pred CCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEE
Confidence 544 4898889888776655555778999999874
No 144
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=43.39 E-value=1.1e+02 Score=32.57 Aligned_cols=131 Identities=8% Similarity=-0.022 Sum_probs=75.9
Q ss_pred cCCCeEEECCCCCCCCCchhh---hhHHHHHHHHhcC-CCCccc-ccchHH-HHhHhCceeeccCCCCcCcccc------
Q 007779 95 EAQAKVCTGPTQTRPLREDEA---FKVLDTILRSAKG-DLKDEE-EVSKAQ-LGAFFSAMTIRANAFPEATQWS------ 162 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~---g~~~~~~i~~~~~-~~PilG-CLGhQ~-i~~~~G~~v~~~~~~~~hG~~s------ 162 (590)
..+||+||..-|=-=.+.++. ....++ ++-... ....|. |.|-|+ |-+.||-.-..+ +.=..|.-.
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I-~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l-~~KlfGVf~h~~~~~ 175 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEI-MEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTL-PEKLSGVYKHDIAPD 175 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHH-HHHHHHcCcchHHHHHHHHHHHHHHcCCCcccc-CCceEEeecCccCCC
Confidence 358999998665331112222 233444 554443 379999 999998 888889887777 444444221
Q ss_pred ----CC--ce--eEEeccchhccccC--CCcEEEEe-ecCCcEEEEEc---C-CCCcccCCCchhhHHHHHHHHhhcCCC
Q 007779 163 ----EG--ER--RAMNTFWPLLMRAL--PPDVIFIA-DPEGSIMGGGG---S-IGPHYSGNDPREMRLVGALREVLAGGH 227 (590)
Q Consensus 163 ----~~--~~--~~~~ryHsl~v~~~--p~~l~v~a-~~~g~im~~~h---~-~gvQfHPEs~~~m~L~~~L~kl~~G~~ 227 (590)
.| .. ..-+||-....+.+ .++|+|.+ +++.-+.-+.. + .=+|=|||=....-..++.|.+..|.+
T Consensus 176 ~pL~rGfdd~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r~vfi~GH~EYd~~TL~~EY~RD~~~g~~ 255 (300)
T TIGR01001 176 SLLLRGFDDFFLAPHSRYADFDAEDIDKVTDLEILAESDEAGVYLAANKDERNIFVTGHPEYDAYTLHQEYVRDIGRGLK 255 (300)
T ss_pred CccccCCCCccccCCCCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCCCCEEEEcCCCccChhHHHHHHHHHHHCCCC
Confidence 11 12 33345444332233 35799998 65533333322 2 447779997554446778888887753
No 145
>PHA00438 hypothetical protein
Probab=41.54 E-value=61 Score=27.55 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhh
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDD 283 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~ 283 (590)
..++|.-..+- ++-+....++.+= ....|++-|+.||.++.+-..|-||+.+.-+.+++
T Consensus 22 a~eyLqvrfNa---sYl~~sG~i~~lR-------~~G~SE~~IaGfl~Gl~yAs~~ldeme~r~~ql~e 80 (81)
T PHA00438 22 AAEYLQVRFNA---SYLEQSGEIRLLR-------QAGYSEAFIAGFLAGLQYASRTLDEMEARREQLRE 80 (81)
T ss_pred HHHHHHHHHhH---HHHHHhhhHHHHH-------HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555444333 5666666677666 66789999999999999999999999887766654
No 146
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=40.91 E-value=45 Score=42.32 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=42.0
Q ss_pred HHHHHhCCceE-EEeCCCCCccccccCCCCCccccccCCCeEEECCC--CCCCCCchhhhh-----------HHHHHHHH
Q 007779 60 ALIDQLGLKES-DIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPT--QTRPLREDEAFK-----------VLDTILRS 125 (590)
Q Consensus 60 ~~~~~lg~~~~-v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspG--Pg~P~~~~~~g~-----------~~~~~i~~ 125 (590)
.-|+..|.++. |.-||-. ... ..++.+++|++..| =|+-. .+|. +.+- ++.
T Consensus 1054 ~Af~~aG~~~~~v~~~dl~-~~~----------~~l~~~~~l~~~GGFS~gD~l---gsg~~~a~~~~~n~~~~~~-~~~ 1118 (1290)
T PRK05297 1054 AAFDRAGFDAIDVHMSDLL-AGR----------VTLEDFKGLVACGGFSYGDVL---GAGEGWAKSILFNPRLRDQ-FEA 1118 (1290)
T ss_pred HHHHHcCCCeEEEEeecCc-CCC----------CChhhCcEEEECCccCCcccc---hHHHHHHHHhhccHHHHHH-HHH
Confidence 34566687655 4445421 111 11567789999888 33322 2222 3444 444
Q ss_pred -h-cCCCCccc-ccchHHHHhH
Q 007779 126 -A-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 126 -~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+ +...++|| |-|+|+|.+.
T Consensus 1119 f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1119 FFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHhCCCceEEEEcHHHHHHHHh
Confidence 3 34699999 9999999986
No 147
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=38.61 E-value=50 Score=35.87 Aligned_cols=99 Identities=11% Similarity=-0.022 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCC-----CC--CccccchHHHHHHHh
Q 007779 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-----GN--TRFFRSTLFVAAVRS 321 (590)
Q Consensus 256 qigAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgD-----G~--~t~niST~laA~vlA 321 (590)
+..++++|....|.+ .+++....+++++....+...+ ..+-+.|.+.. +. .+++-++.+++.+++
T Consensus 25 ~~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~~s~~~ra~~~~~~~~la 103 (416)
T TIGR01072 25 ALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDN-NTLEINTPNINSTEAPYELVRKMRASILVLGPLLA 103 (416)
T ss_pred HHHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcC-CEEEEECCCCCCCCCCHHHHhhhhHHHHHHHHHhc
Confidence 345555555556643 6678889999998776654322 22334443321 10 111222222333444
Q ss_pred c-CCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCC
Q 007779 322 C-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (590)
Q Consensus 322 a-~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~ 355 (590)
. .++++..+|...+.++......|+|+.+|+++.
T Consensus 104 ~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~ 138 (416)
T TIGR01072 104 RFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIV 138 (416)
T ss_pred cCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEE
Confidence 3 256899999777766655556899999999875
No 148
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=38.55 E-value=55 Score=35.29 Aligned_cols=100 Identities=9% Similarity=0.005 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCC-----CCC-ccccchH-HHHHHHh
Q 007779 256 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-----GNT-RFFRSTL-FVAAVRS 321 (590)
Q Consensus 256 qigAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgD-----G~~-t~niST~-laA~vlA 321 (590)
...++++|...+|+| .+++..++++|++....+.....+.+.+.|.+.. +.. ....++. +++.+++
T Consensus 14 ~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~~~~~~I~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~ 93 (400)
T cd01555 14 ALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGENTLVIDASNINSTEAPYELVRKMRASILVLGPLLA 93 (400)
T ss_pred HHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECCCCEEEEECCCCCCCcCCHHHHhhhhhHHHHHHHHhc
Confidence 346677777778875 5679999999998876554322123334343221 000 0011222 3333443
Q ss_pred c-CCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCC
Q 007779 322 C-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (590)
Q Consensus 322 a-~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~ 355 (590)
. .++.+..+|...+.++.-....++|+.+|+++.
T Consensus 94 ~~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~ 128 (400)
T cd01555 94 RFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIE 128 (400)
T ss_pred CCCceEEEEcCCCccccCCHHHHHHHHHHCCCEEE
Confidence 3 457888889755544333334799999999875
No 149
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=38.12 E-value=58 Score=36.83 Aligned_cols=72 Identities=10% Similarity=-0.066 Sum_probs=42.8
Q ss_pred ccccH-HHHHHh-CCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCC-CCc---hhhhhHHHHHHHHhcC
Q 007779 55 ADLDS-ALIDQL-GLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRP-LRE---DEAFKVLDTILRSAKG 128 (590)
Q Consensus 55 ~~~d~-~~~~~l-g~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P-~~~---~~~g~~~~~~i~~~~~ 128 (590)
.||+- .-++.+ +..|.++++.+- +..+| +||=||+-+= .+. .+.|.-.++ +++...
T Consensus 263 sNFtD~dpL~~~~~v~v~~v~~~~~----------------l~~~d-lvIlPGsk~t~~DL~~lr~~g~d~~i-~~~~~~ 324 (486)
T COG1492 263 SNFTDFDPLRAEPDVRVRFVKPGSD----------------LRDAD-LVILPGSKNTIADLKILREGGMDEKI-LEYARK 324 (486)
T ss_pred cccccchhhhcCCCeEEEEeccCCC----------------CCCCC-EEEeCCCcccHHHHHHHHHcCHHHHH-HHHHhC
Confidence 45543 445555 666777766520 22334 4555777652 211 122444555 777777
Q ss_pred CCCccc-ccchHHHHhH
Q 007779 129 DLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 129 ~~PilG-CLGhQ~i~~~ 144 (590)
..|++| |=|+|.|+..
T Consensus 325 ~~~viGICGG~QmLG~~ 341 (486)
T COG1492 325 GGDVIGICGGYQMLGRR 341 (486)
T ss_pred CCCEEEEcchHHhhhhh
Confidence 899999 9999999764
No 150
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=37.83 E-value=1e+02 Score=27.39 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHhcCCccCCCCCC--CCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcC
Q 007779 225 GGHLGYEEVQGVLRDVLPLQVDNKAPG--VSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (590)
Q Consensus 225 G~~Lt~eEa~~a~~~Il~~~~~~~~g~--~sd~qigAFL~alr~KgET~eElag~~~A~~~~~ 285 (590)
.+.||.+|..++...++. +|. .++..|+.+.+...-.-.|++||.-....+....
T Consensus 33 ~r~Ltd~ev~~Va~~L~~------~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~Laa~G 89 (96)
T PF11829_consen 33 RRRLTDDEVAEVAAELAA------RGDPPVDRIDIGVAITRVTDELPTPEDIERVRARLAAAG 89 (96)
T ss_dssp TTTS-HHHHHHHHHHHHH------HTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHHh------cCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhCC
Confidence 456999999999999982 343 3899999999998878889999999888877654
No 151
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=37.77 E-value=1.1e+02 Score=29.17 Aligned_cols=48 Identities=15% Similarity=-0.012 Sum_probs=32.8
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+.+|.|++..|++... ..+.....+. ++++ ....+|.+ |-|-+.|+++
T Consensus 63 ~~~D~liipGg~~~~~-~~~~~~l~~~-l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 63 AAADTVIVPGGPDVDG-RPPPPALLAA-LRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCEEEECCCccccc-ccCCHHHHHH-HHHHHhcCCEEEEECHHHHHHHHc
Confidence 3578999987766531 1233456777 6664 44589999 9999988873
No 152
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=37.22 E-value=50 Score=36.90 Aligned_cols=47 Identities=15% Similarity=-0.016 Sum_probs=31.5
Q ss_pred CCCeEEECCCCCCCCCchh----hhhHHHHHHHHhcCCCCccc-ccchHHHHhHh
Q 007779 96 AQAKVCTGPTQTRPLREDE----AFKVLDTILRSAKGDLKDEE-EVSKAQLGAFF 145 (590)
Q Consensus 96 ~~~~ivlspGPg~P~~~~~----~g~~~~~~i~~~~~~~PilG-CLGhQ~i~~~~ 145 (590)
..|+|+|+.|- |+...+ .+. ++-|.+......||+| |=|.|.|++..
T Consensus 274 ~~D~l~lpGG~--~e~~~~~L~~n~~-~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 274 DCDGVYLPGGY--PELHADALADSPA-LDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred CCCEEEeCCCc--hhhHHHHHHhCCc-HHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 34888887775 653221 122 3552444556699999 99999999988
No 153
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=36.15 E-value=29 Score=32.09 Aligned_cols=49 Identities=8% Similarity=-0.048 Sum_probs=33.6
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+.+|.|++..|++.+....+....++. ++++ ....++.+ |=|-..|+++
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~-l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKL-LKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHH-HHHHHHcCCEEEEEchhHHHHHHc
Confidence 457999997777433322233456777 6654 44588888 9999999986
No 154
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=35.95 E-value=64 Score=41.00 Aligned_cols=85 Identities=14% Similarity=0.064 Sum_probs=48.1
Q ss_pred ccceeEeec----cccH---HHHHHhCCceEEEe-CCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhh-
Q 007779 47 RRIRLTVKA----DLDS---ALIDQLGLKESDII-NPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFK- 117 (590)
Q Consensus 47 ~~~~~~~~~----~~d~---~~~~~lg~~~~v~r-nd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~- 117 (590)
.|+++.++- |=|- .-|...|.++.++. +|-. ... ..++.+++|++..|-..=+.. .+|.
T Consensus 1054 ~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~-~~~----------~~l~~~~~lv~~GGFSygD~l-gsg~~ 1121 (1310)
T TIGR01735 1054 VRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLL-AGR----------VHLDEFRGLAACGGFSYGDVL-GAGKG 1121 (1310)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccc-cCC----------cchhheeEEEEcCCCCCccch-hHHHH
Confidence 355665553 4444 33555687655444 4421 111 115677899998885432111 2222
Q ss_pred ----------HHHHHHHHh--cCCCCccc-ccchHHHHhH
Q 007779 118 ----------VLDTILRSA--KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 118 ----------~~~~~i~~~--~~~~PilG-CLGhQ~i~~~ 144 (590)
+.+- ++.| +...++|| |-|+|+|...
T Consensus 1122 ~a~~i~~~~~~~~~-~~~f~~~~d~~~LGiCNGfQ~L~~~ 1160 (1310)
T TIGR01735 1122 WAKSILFNPRLRDQ-FQAFFKRPDTFSLGVCNGCQMLSNL 1160 (1310)
T ss_pred HHHHHHhChHHHHH-HHHHHhCCCceEEEecHHHHHHHHH
Confidence 3444 4443 45689999 9999999933
No 155
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=35.07 E-value=13 Score=34.59 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=34.5
Q ss_pred cCCCeEEECCCCCCCCCch-hhhhHHHHHHHHhc-CCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLRED-EAFKVLDTILRSAK-GDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~-~~g~~~~~~i~~~~-~~~PilG-CLGhQ~i~~~ 144 (590)
+.||+|+|..|++.+.+.. +...+.++ ++++. .++||-. |-|-..|+.+
T Consensus 36 ~~yDalilpGG~~~~~~l~~~~~~l~~~-~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 36 SDYDALILPGGHGGADDLRTDSKDLLEL-LKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGESEEEEE-BTHHHHHHTTCHHHHHHH-HHHHHHTT-EEEEETTCHHHHHHT
T ss_pred hhCCEEEECCCCchhhhHhhHHHHHHHH-HHHHHHcCCeEEecCCCcchhhcc
Confidence 3589999999998655333 34567777 77754 4688888 9999888766
No 156
>PRK10867 signal recognition particle protein; Provisional
Probab=34.68 E-value=6.1e+02 Score=28.38 Aligned_cols=169 Identities=14% Similarity=0.142 Sum_probs=92.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhc--CC------CHHH-HHHH-HHhhhh
Q 007779 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--RE------TDRE-LKAY-CLAFDD 283 (590)
Q Consensus 214 ~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~K--gE------T~eE-lag~-~~A~~~ 283 (590)
+|.+.++++.....||.+...+.++.|-..++ +-+++....-.|+-.++-+ |+ ++.+ +... .+.+.+
T Consensus 8 ~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll---~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~ 84 (433)
T PRK10867 8 RLSSAFKKLRGKGRLTEADIKEALREVRLALL---EADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVE 84 (433)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHH
Confidence 47788888877778998766665555431111 5678888888888877543 32 2322 3222 223333
Q ss_pred cCCC----CCCC-C-CCCceEEccCCCCCCccccchHHHHHHHhcC-CCcEEeecCCCCCCCCCCCHHHH----HHhcCC
Q 007779 284 ELGP----PPVA-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCY-GESCLLHGAEWMPPKGGVTEEQM----LKFMGA 352 (590)
Q Consensus 284 ~~~~----~~~~-~-~~~vD~~GtGgDG~~t~niST~laA~vlAa~-Gv~V~kHGnr~vtsk~Gst~aDv----LeaLGi 352 (590)
.... +... . +.++-.||.+|.|++|+-.-. |. .++.. |.+|+.=..+.. +.+. .+- .+.+|+
T Consensus 85 ~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakL--A~-~l~~~~G~kV~lV~~D~~--R~aa--~eQL~~~a~~~gv 157 (433)
T PRK10867 85 ILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKL--AK-YLKKKKKKKVLLVAADVY--RPAA--IEQLKTLGEQIGV 157 (433)
T ss_pred HhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHH--HH-HHHHhcCCcEEEEEcccc--chHH--HHHHHHHHhhcCC
Confidence 2221 1111 1 235778999999987643322 22 23444 888987765542 2332 233 356777
Q ss_pred CC-----CCCHHHHHH-HH---HhccCceEeecchhhCh----HhHHHHhhhc
Q 007779 353 ST-----NLSVLQAKE-LL---EDEEIGFAYVSLREARP----SLYSLIGLRE 392 (590)
Q Consensus 353 ~i-----~~s~e~a~~-~L---e~~g~gf~fl~a~~~~P----al~~l~~vR~ 392 (590)
++ ..+|.++.. .+ ...+.-+++++.+--++ .|..+..+.+
T Consensus 158 ~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~ 210 (433)
T PRK10867 158 PVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKA 210 (433)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence 62 245665553 33 33346677787766443 3444444444
No 157
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=34.09 E-value=28 Score=31.67 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=21.0
Q ss_pred HHHHHHH-hcCCCCccc-ccchHHHHhHhCceeecc
Q 007779 119 LDTILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRA 152 (590)
Q Consensus 119 ~~~~i~~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~ 152 (590)
.+. |++ .....|+|| |||-= ++++.||-....
T Consensus 67 ~~~-i~~~v~~g~p~LGIClGAy-~a~~~~G~~~~~ 100 (114)
T cd03144 67 NRR-IRNFVRNGGNYLGICAGAY-LAYFNGGPVFEG 100 (114)
T ss_pred cHH-HHHHHHCCCcEEEEecCcc-ceEEcCCeeecc
Confidence 556 555 445699999 99963 445556655544
No 158
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=33.97 E-value=98 Score=33.27 Aligned_cols=103 Identities=17% Similarity=0.039 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCC---Ccccc--c-hH--HH
Q 007779 252 VSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN---TRFFR--S-TL--FV 316 (590)
Q Consensus 252 ~sd~qigAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~---~t~ni--S-T~--la 316 (590)
=+.++-+-++.++ .+|+| .+++..+.+++++....+...+ ..+-+-|.+..+. ..++. | +. |.
T Consensus 11 Ks~~~r~l~~a~l-~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~i~~~~s~~s~~~l 88 (409)
T cd01556 11 KSISHRALLLAAL-AEGESRIENLLDSDDTLATLEALRALGAKIEEEG-GTVEIVGGGGLGLPPEAVLDCGNSGTTMRLL 88 (409)
T ss_pred hHHHHHHHHHHHh-cCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecC-CEEEEEcCCCCCCCCCceEEcCCchHHHHHH
Confidence 3455555555555 67775 6889999999998876665433 2333444333222 22232 1 22 23
Q ss_pred HHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCC
Q 007779 317 AAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (590)
Q Consensus 317 A~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~ 356 (590)
..+++.++.++..+|...+.++-=....++|+.||+++..
T Consensus 89 ~~l~~~~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~ 128 (409)
T cd01556 89 TGLLALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEG 128 (409)
T ss_pred HHHHHcCCCeEEEECCcccccCChHHHHHHHHHCCCEEEe
Confidence 3333344668888887444332113348999999998763
No 159
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=32.14 E-value=1.1e+02 Score=30.39 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcC
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~ 285 (590)
....|..+...+.+..++-.+.++.++ +..++=..++-+.++-++|.-|+++-..|+++|++..
T Consensus 34 ~~~vl~~l~~~~~~~~~~~~~~l~~iv-------~~~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l 97 (198)
T TIGR03481 34 HGALLDVMKEAKKLGYQGRYTKLAPAV-------REAFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELS 97 (198)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHH-------HHhCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 344555555555566667778888888 6778888999999999999999999999999999854
No 160
>PRK14974 cell division protein FtsY; Provisional
Probab=32.07 E-value=5e+02 Score=28.01 Aligned_cols=147 Identities=13% Similarity=0.095 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhc--------CCCHHHH--HHHHHhhhhcCCCCC---C----
Q 007779 228 LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--------RETDREL--KAYCLAFDDELGPPP---V---- 290 (590)
Q Consensus 228 Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~K--------gET~eEl--ag~~~A~~~~~~~~~---~---- 290 (590)
++.++..+.++.+...++ +.++++.-.-.++-.++-+ +.+.+++ ..+.+++.+.....+ .
T Consensus 58 ~~~~~~~~~l~~l~~~Ll---~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 134 (336)
T PRK14974 58 IKEKDIEDLLEELELELL---ESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEI 134 (336)
T ss_pred cCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCcchhhhhhh
Confidence 565555554444321111 5667776666776666544 2343331 233444444222211 0
Q ss_pred --C-CCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCC--HHHHHHhcCCCCC-----CCHHH
Q 007779 291 --A-DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVT--EEQMLKFMGASTN-----LSVLQ 360 (590)
Q Consensus 291 --~-~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst--~aDvLeaLGi~i~-----~s~e~ 360 (590)
. ...++-.+|.+|.|++|.-.- .|..+...|.+|+....+. -+.|.. +....+.+|+++. .+|..
T Consensus 135 ~~~~~~~vi~~~G~~GvGKTTtiak---LA~~l~~~g~~V~li~~Dt--~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~ 209 (336)
T PRK14974 135 KSKGKPVVIVFVGVNGTGKTTTIAK---LAYYLKKNGFSVVIAAGDT--FRAGAIEQLEEHAERLGVKVIKHKYGADPAA 209 (336)
T ss_pred hccCCCeEEEEEcCCCCCHHHHHHH---HHHHHHHcCCeEEEecCCc--CcHHHHHHHHHHHHHcCCceecccCCCCHHH
Confidence 0 123577899999998753221 2223456788998866543 333431 1223445787652 22322
Q ss_pred -HHH---HHHhccCceEeecchhhCh
Q 007779 361 -AKE---LLEDEEIGFAYVSLREARP 382 (590)
Q Consensus 361 -a~~---~Le~~g~gf~fl~a~~~~P 382 (590)
+.+ .....+.-++.+..+-..+
T Consensus 210 v~~~ai~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 210 VAYDAIEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCccC
Confidence 222 2233456677777765544
No 161
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=32.07 E-value=90 Score=39.41 Aligned_cols=51 Identities=12% Similarity=-0.194 Sum_probs=31.2
Q ss_pred ccCCCeEEECCCCCCCCCchhhh----------hHHHHHHHHhcCCCCccc-ccchHHHHhH
Q 007779 94 LEAQAKVCTGPTQTRPLREDEAF----------KVLDTILRSAKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~~g----------~~~~~~i~~~~~~~PilG-CLGhQ~i~~~ 144 (590)
++.+++|++..|=..=+...-.+ .+.+-+.+.+....++|| |=|+|+|.+.
T Consensus 1029 l~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1029 IDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred cccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence 56778899877754322110111 234441333445699999 9999999875
No 162
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=30.93 E-value=60 Score=31.21 Aligned_cols=48 Identities=13% Similarity=-0.048 Sum_probs=32.6
Q ss_pred cCCCeEEECCCCCCCC--CchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHh
Q 007779 95 EAQAKVCTGPTQTRPL--REDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGA 143 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~--~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~ 143 (590)
+.+|.|+|..|++.+. +..+....++. ++++ ....+|.+ |=|-..|+.
T Consensus 68 ~~~D~liIpgg~~~~~~~~~~~~~~l~~~-l~~~~~~~~~i~aic~G~~~La~ 119 (195)
T cd03138 68 PAPDLVIVPGLGGDPDELLLADNPALIAW-LRRQHANGATVAAACTGVFLLAE 119 (195)
T ss_pred CCCCEEEECCCcCCchhhhhhccHHHHHH-HHHHHHcCCEEEEecHHHHHHHH
Confidence 4578999977766543 22233456777 6654 45688888 999998886
No 163
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=30.61 E-value=1.2e+02 Score=32.90 Aligned_cols=102 Identities=15% Similarity=0.011 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCC-CCCcccc---chH--HHHHH
Q 007779 253 SESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-GNTRFFR---STL--FVAAV 319 (590)
Q Consensus 253 sd~qigAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgD-G~~t~ni---ST~--laA~v 319 (590)
+-++.+-++.++ .+|+| .+++..++++++.....+...+ ..+-+-|+|+. ....+++ -|. |...+
T Consensus 10 s~~~r~l~~a~l-a~g~~~i~~~~~~~dv~~~~~~l~~lG~~i~~~~-~~~~i~g~~~~~~~~~i~~g~sgt~~r~l~~l 87 (409)
T TIGR01356 10 SITHRALILAAL-AEGETRVRNLLRSEDTLATLDALRALGAKIEDGG-EVAVIEGVGGKEPQAELDLGNSGTTARLLTGV 87 (409)
T ss_pred HHHHHHHHHHHh-CCCCEEECCCCcCHHHHHHHHHHHHcCCEEEecC-CEEEEEccCCCCCCCEEEecCchHHHHHHHHH
Confidence 344444444444 46765 7899999999998776554322 23333444431 1112221 121 44556
Q ss_pred HhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCC
Q 007779 320 RSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (590)
Q Consensus 320 lAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~ 356 (590)
+|.++.++..+|...+.++-=..+.+.|+.||+.+..
T Consensus 88 ~a~~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~~ 124 (409)
T TIGR01356 88 LALADGEVVLTGDESLRKRPMGRLVDALRQLGAEISS 124 (409)
T ss_pred HHcCCCeEEEECCcccccCCcHHHHHHHHHCCCEEEE
Confidence 6667789999998665433222247888999998753
No 164
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=30.11 E-value=7.8e+02 Score=27.12 Aligned_cols=157 Identities=10% Similarity=0.054 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcC-----CCHHHHHHH-HHhhhhcCC---CCC-CCCCCCc
Q 007779 227 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR-----ETDRELKAY-CLAFDDELG---PPP-VADVKSL 296 (590)
Q Consensus 227 ~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~Kg-----ET~eElag~-~~A~~~~~~---~~~-~~~~~~v 296 (590)
.++.+....+.+.+. +.++++.-.-.++--++-+. ++.+.+.-. .+.+.+... +.. ......+
T Consensus 105 ~~~~~~~~~l~~~L~-------~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi 177 (388)
T PRK12723 105 EINHPTILKIEDILR-------ENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVF 177 (388)
T ss_pred ccCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHhhccCccccCCCCeEE
Confidence 445555556666666 67788877777776664331 133332222 222222221 111 1112357
Q ss_pred eEEccCCCCCCccccchHHHHHHHh--cCCCcEEeecCCCCCCCCCCCHHHHHHh----cCCCCC--CCHHHHHHHHHhc
Q 007779 297 THYGEPYDGNTRFFRSTLFVAAVRS--CYGESCLLHGAEWMPPKGGVTEEQMLKF----MGASTN--LSVLQAKELLEDE 368 (590)
Q Consensus 297 D~~GtGgDG~~t~niST~laA~vlA--a~Gv~V~kHGnr~vtsk~Gst~aDvLea----LGi~i~--~s~e~a~~~Le~~ 368 (590)
-.+|+.|.|++|+-...+ +.+... ..|.+|..=..+. -+.|+ .+-|.. +|+++. .+++++.+.+++.
T Consensus 178 ~lvGptGvGKTTT~aKLA-~~~~~~~~~~g~~V~lit~Dt--~R~aa--~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 178 ILVGPTGVGKTTTIAKLA-AIYGINSDDKSLNIKIITIDN--YRIGA--KKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred EEECCCCCCHHHHHHHHH-HHHHhhhccCCCeEEEEeccC--ccHHH--HHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 789999999876433222 222222 2477887655543 34444 333444 788744 4667777766543
Q ss_pred -cCceEeecchhhChH-hHHHHhhhcccC
Q 007779 369 -EIGFAYVSLREARPS-LYSLIGLREHIK 395 (590)
Q Consensus 369 -g~gf~fl~a~~~~Pa-l~~l~~vR~~Lg 395 (590)
+.-+++++.+-.+|. ...+..+++.+.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 467788888777764 223445555544
No 165
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=29.90 E-value=71 Score=40.27 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=41.1
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCC--CCCchhhhh-----------HHHHHHHHh
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTR--PLREDEAFK-----------VLDTILRSA 126 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~--P~~~~~~g~-----------~~~~~i~~~ 126 (590)
.-|...|.++.++.-..+... + .++.+++||+..|-+. +. -+|. +.+- +++|
T Consensus 948 ~Af~~aGf~~~~v~~~dl~~~-------~----~l~~f~glv~~Ggfsy~D~l---gsg~~~a~~il~n~~~~~~-~~~f 1012 (1202)
T TIGR01739 948 AALTNAGFDPRIVSITELKKT-------D----FLDTFSGLIIGGASGTLDSE---VGARALAAALLRNQAFLRD-LLTF 1012 (1202)
T ss_pred HHHHHcCCceEEEEeccCCCC-------C----chhheEEEEEcCcCCCCccc---hHHHHHHHHhhcchHHHHH-HHHH
Confidence 445667877665543322111 0 1456789999666643 54 3333 2333 3443
Q ss_pred c--CCCCccc-c-cchHHHHhH
Q 007779 127 K--GDLKDEE-E-VSKAQLGAF 144 (590)
Q Consensus 127 ~--~~~PilG-C-LGhQ~i~~~ 144 (590)
. ...++|| | ||.|+|.+.
T Consensus 1013 ~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1013 LNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HhCCCceEEEeCcHHHHHHHHc
Confidence 3 3699999 9 599999874
No 166
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=29.90 E-value=3.2e+02 Score=30.57 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=93.8
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhc--CC------CHHH-HH-HHHHhhh
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--RE------TDRE-LK-AYCLAFD 282 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~K--gE------T~eE-la-g~~~A~~ 282 (590)
-+|.+.++++.....||.+...++++.|-..++ +-+++..-.-.|+--++-+ |+ ++.+ +. -+.+.+.
T Consensus 7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl---eaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~ 83 (429)
T TIGR01425 7 SSITSALRSMSNATVIDEEVLNAMLKEICTALL---ESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELC 83 (429)
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHH
Confidence 358899999988889999998888877653222 4678887777888777543 22 2211 21 2223333
Q ss_pred hcCCC----CCCC--CCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHH----hcCC
Q 007779 283 DELGP----PPVA--DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLK----FMGA 352 (590)
Q Consensus 283 ~~~~~----~~~~--~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLe----aLGi 352 (590)
+...+ +... ...++-.||..|.|++|+-... ++ .+...|.+|+.-..+.. +.|. .+-|+ .+|+
T Consensus 84 ~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKL--A~-~l~~~G~kV~lV~~D~~--R~aA--~eQLk~~a~~~~v 156 (429)
T TIGR01425 84 NLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKL--AY-YYQRKGFKPCLVCADTF--RAGA--FDQLKQNATKARI 156 (429)
T ss_pred HHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHH--HH-HHHHCCCCEEEEcCccc--chhH--HHHHHHHhhccCC
Confidence 32221 1111 1236778999999987643322 22 34566889888766542 2333 45543 3566
Q ss_pred CCC-----CCHHHH-HHH---HHhccCceEeecchhhChHhH
Q 007779 353 STN-----LSVLQA-KEL---LEDEEIGFAYVSLREARPSLY 385 (590)
Q Consensus 353 ~i~-----~s~e~a-~~~---Le~~g~gf~fl~a~~~~Pal~ 385 (590)
++. .+|.++ .+. +.+.+.-+++++.+--++...
T Consensus 157 p~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~ 198 (429)
T TIGR01425 157 PFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQED 198 (429)
T ss_pred eEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchH
Confidence 532 244332 223 333467888898887665543
No 167
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=29.41 E-value=55 Score=32.76 Aligned_cols=49 Identities=10% Similarity=-0.061 Sum_probs=34.5
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+.||+|+|-.|++...+..+...+.++ ++++ ....+|-+ |=|-+.|+.+
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~-l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDL-LREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHH-HHHHHHcCCEEEEEcchHHHHHhc
Confidence 458999998887654333234457777 6664 44688888 9999988875
No 168
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=28.90 E-value=80 Score=32.26 Aligned_cols=74 Identities=18% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCC--CchhhhhHHHHHHHHhcCCCCccc-cc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPL--REDEAFKVLDTILRSAKGDLKDEE-EV 136 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~--~~~~~g~~~~~~i~~~~~~~PilG-CL 136 (590)
+.++.+|+++..++..+ +. ...++..|+|+++.|=..-. ...+.| ..+.|.+.+...+|+.| |-
T Consensus 55 ~af~~lG~~v~~l~~~~----d~--------~~~l~~ad~I~v~GGnt~~l~~~l~~~g-l~~~l~~~~~~G~~~~G~SA 121 (233)
T PRK05282 55 EALAPLGIEVTGIHRVA----DP--------VAAIENAEAIFVGGGNTFQLLKQLYERG-LLAPIREAVKNGTPYIGWSA 121 (233)
T ss_pred HHHHHCCCEEEEeccch----hh--------HHHHhcCCEEEECCccHHHHHHHHHHCC-cHHHHHHHHHCCCEEEEECH
Confidence 67888999988886542 10 01145568999998821100 000111 23332334556799999 99
Q ss_pred chHHHHhHhC
Q 007779 137 SKAQLGAFFS 146 (590)
Q Consensus 137 GhQ~i~~~~G 146 (590)
|--+++...+
T Consensus 122 GAii~~~~i~ 131 (233)
T PRK05282 122 GANVAGPTIR 131 (233)
T ss_pred HHHhhhccce
Confidence 9877666544
No 169
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=28.03 E-value=1.3e+02 Score=33.63 Aligned_cols=105 Identities=15% Similarity=0.033 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHH-----------HHHHhhhhcCCCCCCCCCCCceEEccC-CCCCCc---cccch
Q 007779 249 APGVSESLLSAFLIGQRMNRETDRELK-----------AYCLAFDDELGPPPVADVKSLTHYGEP-YDGNTR---FFRST 313 (590)
Q Consensus 249 ~g~~sd~qigAFL~alr~KgET~eEla-----------g~~~A~~~~~~~~~~~~~~~vD~~GtG-gDG~~t---~niST 313 (590)
++.++-.|+.++|++.-...+....+. -=.+-|+++...+..... .+-+.|.+ +.+.+= --.|.
T Consensus 164 ~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~-~~~i~~g~~~~~~~~~VpgD~SS 242 (428)
T COG0128 164 DGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGY-RFYIPGGQKLTPGDYDVPGDYSS 242 (428)
T ss_pred eccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeecc-EEEECCCccccCceEEcCCChhh
Confidence 678899999999998877764333211 123344455544433211 12222211 111100 01233
Q ss_pred H---HHHHHHhcCCCc-EEeecCCCCCCCCCCCHHHHHHhcCCCCCCC
Q 007779 314 L---FVAAVRSCYGES-CLLHGAEWMPPKGGVTEEQMLKFMGASTNLS 357 (590)
Q Consensus 314 ~---laA~vlAa~Gv~-V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s 357 (590)
+ ++|.+++ -++. +.++.-..-+..-+. -|+|+.||.++...
T Consensus 243 AafflaAaai~-~~~~~i~~~~v~~~~~~~~~--~~vl~~MGa~i~~~ 287 (428)
T COG0128 243 AAFFLAAAAIT-PRSTGITLKNVQPNPTDKGI--LDVLEKMGADIEIG 287 (428)
T ss_pred HHHHHHHHHhc-CCCceeeeccCCcCcchhHH--HHHHHHcCCeEEEc
Confidence 2 2333333 4566 666665544445555 69999999987654
No 170
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=27.74 E-value=5.7e+02 Score=28.57 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=89.5
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHh--cCC------CH-HHHHHHH-Hhhh
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NRE------TD-RELKAYC-LAFD 282 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~--KgE------T~-eElag~~-~A~~ 282 (590)
-++.+.++++.....||.++..++++.|-..++ +-+++....-.|+-.++- +|+ ++ +.+...+ +.+.
T Consensus 6 ~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll---~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~ 82 (428)
T TIGR00959 6 ERLQRIFKKLSGRGTITEKNIKEALREIRLALL---EADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELV 82 (428)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHH
Confidence 358889999987788999877777766542222 567888788888877753 332 33 2232221 2222
Q ss_pred hcCCC----CCCC-C-CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHH----HhcCC
Q 007779 283 DELGP----PPVA-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGA 352 (590)
Q Consensus 283 ~~~~~----~~~~-~-~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvL----eaLGi 352 (590)
+.... +... . +.++-.+|.+|.|++|+-.-. ++.+.+..|.+|+.=..+. -+.+. .+-| +.+|+
T Consensus 83 ~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakL--A~~l~~~~g~kV~lV~~D~--~R~~a--~~QL~~~a~~~gv 156 (428)
T TIGR00959 83 AILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKL--AYYLKKKQGKKVLLVACDL--YRPAA--IEQLKVLGQQVGV 156 (428)
T ss_pred HHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHH--HHHHHHhCCCeEEEEeccc--cchHH--HHHHHHHHHhcCC
Confidence 22221 1111 1 235778999999987643332 3333335688888776554 22232 3433 34565
Q ss_pred CC-----CCCHHHHH-HHH---HhccCceEeecchhhCh
Q 007779 353 ST-----NLSVLQAK-ELL---EDEEIGFAYVSLREARP 382 (590)
Q Consensus 353 ~i-----~~s~e~a~-~~L---e~~g~gf~fl~a~~~~P 382 (590)
++ ..+|.++. +.+ .+.+.-++++..+--++
T Consensus 157 p~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 157 PVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred ceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 52 23464442 333 34455677887766543
No 171
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=26.64 E-value=1.8e+02 Score=23.30 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=31.2
Q ss_pred HHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcC
Q 007779 234 QGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (590)
Q Consensus 234 ~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~ 285 (590)
+++++.+.. ....|..|+.+++-.+--..-++.++++|.-|++-+.
T Consensus 3 ~~~l~~l~~------g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~~kg 48 (66)
T PF02885_consen 3 KEILKKLRD------GEDLSREEAKAAFDAILDGEVSDAQIAAFLMALRMKG 48 (66)
T ss_dssp HHHHHHHHT------T----HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHc------CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 566777771 4458999999888888555559999999999998665
No 172
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.43 E-value=1.2e+02 Score=26.63 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=29.7
Q ss_pred HHHHHHHhhc--CCCCCHHHHHHHHHHhcCCcc--CCCCCCCCHHHHHHHHH
Q 007779 215 LVGALREVLA--GGHLGYEEVQGVLRDVLPLQV--DNKAPGVSESLLSAFLI 262 (590)
Q Consensus 215 L~~~L~kl~~--G~~Lt~eEa~~a~~~Il~~~~--~~~~g~~sd~qigAFL~ 262 (590)
|.+|.++-.. |-+||.+++++++--|- -.. .+...++||.|.+||=.
T Consensus 48 Ls~Wy~eaae~~gv~lskd~aRE~VyGMp-y~eWka~~Q~eAspeq~aafe~ 98 (104)
T COG3492 48 LSNWYREAAEAQGVDLSKDQAREIVYGMP-YAEWKAQHQSEASPEQKAAFEA 98 (104)
T ss_pred HHHHHHHHHhccCCCccHHHHHHHHhCCC-HHHHHHhcCCCCCHHHHHHHHh
Confidence 4444444443 44999999999876543 000 11157899999999843
No 173
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.65 E-value=1.1e+03 Score=27.53 Aligned_cols=132 Identities=12% Similarity=0.073 Sum_probs=70.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCC----CCCCCCceEEccCCCCCCccccchHHHHHHHhc-C
Q 007779 249 APGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPP----VADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSC-Y 323 (590)
Q Consensus 249 ~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~----~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa-~ 323 (590)
+-.+++.-+-.++..+.-.. ..++....+........++. +.....+-++|.+|.||.|+-... ++..... .
T Consensus 303 ~~Gvs~~la~~L~~~l~~~~-~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakL--Aa~la~~~~ 379 (559)
T PRK12727 303 DYGFDAGLTRDVAMQIPADT-ELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKL--AQRFAAQHA 379 (559)
T ss_pred HCCCCHHHHHHHHHhhhccc-chhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHH--HHHHHHhcC
Confidence 66788887777777654332 23333334443333333321 122346778999999987543221 2222222 2
Q ss_pred CCcEEeecCCCCCCCCCCCHHHHHH----hcCCCCC--CCHHHHHHHHHhc-cCceEeecchhhChHhHHH
Q 007779 324 GESCLLHGAEWMPPKGGVTEEQMLK----FMGASTN--LSVLQAKELLEDE-EIGFAYVSLREARPSLYSL 387 (590)
Q Consensus 324 Gv~V~kHGnr~vtsk~Gst~aDvLe----aLGi~i~--~s~e~a~~~Le~~-g~gf~fl~a~~~~Pal~~l 387 (590)
|.+|..-..+ +-+.|. .+.|. .+|+.+. .+..+..+.|++. +.-+++++.+-..+....+
T Consensus 380 gkkVaLIdtD--tyRigA--~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDTaG~s~~D~~l 446 (559)
T PRK12727 380 PRDVALVTTD--TQRVGG--REQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRAL 446 (559)
T ss_pred CCceEEEecc--cccccH--HHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecCCCcchhhHHH
Confidence 4556544433 233344 45553 3666543 4556667777653 3667888888777654443
No 174
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=25.48 E-value=1.2e+02 Score=26.62 Aligned_cols=39 Identities=15% Similarity=-0.087 Sum_probs=35.0
Q ss_pred CCCcccCCCchhhHHHHHHHHhhcCCCCCHHHHHHHHHHhc
Q 007779 201 IGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVL 241 (590)
Q Consensus 201 ~gvQfHPEs~~~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il 241 (590)
|....||.+-.|..+++||-+. |.--|++||-.....+|
T Consensus 29 ~~l~~y~~cFvGsElVdWLi~~--g~~~tR~eAv~~gq~Ll 67 (93)
T cd04440 29 YHLKTYKSVVPASKLVDWLLAQ--GDCRTREEAVILGVGLC 67 (93)
T ss_pred eccEEcccccchhHHHHHHHHc--CCCCCHHHHHHHHHHHH
Confidence 8888899999999999998665 77679999999999999
No 175
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=83 Score=32.36 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCeEEECCCCCC--CCCchhhhh-HHHHHHHHhcCCCCccc---ccchHHHHh
Q 007779 97 QAKVCTGPTQTR--PLREDEAFK-VLDTILRSAKGDLKDEE---EVSKAQLGA 143 (590)
Q Consensus 97 ~~~ivlspGPg~--P~~~~~~g~-~~~~~i~~~~~~~PilG---CLGhQ~i~~ 143 (590)
.|.||..-|||- |. .... +..+ +..+ -++|+.| |.||--|+.
T Consensus 71 iD~icyTKGPGmgaPL---~~vaivaRt-lsll-w~kPlv~VNHCigHIEMGR 118 (336)
T KOG2708|consen 71 IDCICYTKGPGMGAPL---SVVAIVART-LSLL-WNKPLVGVNHCIGHIEMGR 118 (336)
T ss_pred CCEEEEcCCCCCCCch---hhHHHHHHH-HHHH-hCCCcccchhhhhhhhhcc
Confidence 377888666655 77 4332 3333 3222 3789999 999987754
No 176
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.54 E-value=6e+02 Score=23.58 Aligned_cols=89 Identities=11% Similarity=-0.034 Sum_probs=52.1
Q ss_pred HHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeecc--hhhChHhHHHHhhhcc
Q 007779 316 VAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSL--REARPSLYSLIGLREH 393 (590)
Q Consensus 316 aA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a--~~~~Pal~~l~~vR~~ 393 (590)
++..+-++|+.|.--|. +.+++++.+...+++.-++.+++ ....+.|+.+...-++
T Consensus 19 v~~~L~~~GfeVidLG~----------------------~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~ 76 (128)
T cd02072 19 LDHAFTEAGFNVVNLGV----------------------LSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDE 76 (128)
T ss_pred HHHHHHHCCCEEEECCC----------------------CCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHH
Confidence 55566677777764332 44667766666666666655544 4456778888887777
Q ss_pred cCCCCCCCcchhhhhhhhccCCceEEEEec--CCcchHHHHHHHHHcCCce
Q 007779 394 IKKRPPVATSEKVQQFVRAQGREAIVAGFY--HEGYEEPLLMLMKRRGVHS 442 (590)
Q Consensus 394 Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~--h~~~~~~~a~~l~~lG~~~ 442 (590)
-|+|... ..+=|.. .++-.+.....|+.+|+++
T Consensus 77 ~gl~~v~----------------vivGG~~~i~~~d~~~~~~~L~~~Gv~~ 111 (128)
T cd02072 77 AGLKDIL----------------LYVGGNLVVGKQDFEDVEKRFKEMGFDR 111 (128)
T ss_pred CCCCCCe----------------EEEECCCCCChhhhHHHHHHHHHcCCCE
Confidence 7775411 2344432 2222233456678888843
No 177
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=23.03 E-value=2.3e+02 Score=26.61 Aligned_cols=47 Identities=11% Similarity=-0.107 Sum_probs=31.4
Q ss_pred CCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 96 AQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 96 ~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
.+|.|++-.|++.. ...+.....+. ++++ ....+|.+ |-|--.|+++
T Consensus 62 ~~D~lvipgg~~~~-~~~~~~~~~~~-l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 62 DLDVLLVPGGGGTR-ALVNDPALLDF-IRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCEEEECCCcchh-hhccCHHHHHH-HHHhcccCCEEEEEchHHHHHHhc
Confidence 57999998776532 12233456777 6654 44578888 9998877763
No 178
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=22.36 E-value=1.3e+02 Score=30.66 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=41.0
Q ss_pred HHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCC--chhhhhHHHHHHHH-hcCCCCccc-ccc
Q 007779 62 IDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLR--EDEAFKVLDTILRS-AKGDLKDEE-EVS 137 (590)
Q Consensus 62 ~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~--~~~~g~~~~~~i~~-~~~~~PilG-CLG 137 (590)
.+-.|++|.|++-+ +.+ ..+ .+.+|-++++.|.-.-.. .++.+.--+- ++. +....|+|- |=|
T Consensus 30 a~~rgi~v~i~~vs---l~d-----~~~----~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~-l~~~i~~g~p~laiCgg 96 (250)
T COG3442 30 AEKRGIKVEIVEVS---LTD-----TFP----DDSYDLYFLGGGQDYEQEIATRDLLTKKEG-LKDAIENGKPVLAICGG 96 (250)
T ss_pred HHhcCCceEEEEee---cCC-----CCC----cccccEEEecCchHHHHHHHhhhhccccHH-HHHHHhcCCcEEEEccc
Confidence 44468888887533 211 111 235688999998743221 0111111122 233 345699999 999
Q ss_pred hHHHHhHh
Q 007779 138 KAQLGAFF 145 (590)
Q Consensus 138 hQ~i~~~~ 145 (590)
.|.|++.|
T Consensus 97 ~QlLG~yY 104 (250)
T COG3442 97 YQLLGQYY 104 (250)
T ss_pred hhhcccee
Confidence 99999876
No 179
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=22.26 E-value=1.6e+02 Score=28.90 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=61.1
Q ss_pred ccCCCeEEECCCCCCCCC-chhhhhHHHHHHHHh--cCCCCccc-ccchHHHHhHhC----------c---eeeccCCCC
Q 007779 94 LEAQAKVCTGPTQTRPLR-EDEAFKVLDTILRSA--KGDLKDEE-EVSKAQLGAFFS----------A---MTIRANAFP 156 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~-~~~~g~~~~~~i~~~--~~~~PilG-CLGhQ~i~~~~G----------~---~v~~~~~~~ 156 (590)
++.-|++||-.|-.+--. ..+.....+- +.++ .+++|+-| |-|+-.|..-.- + +|.|- .++
T Consensus 54 ~aq~DaLIIPGGEST~mslia~~tgL~d~-L~~fVhn~~k~~WGTCAGmI~LS~ql~nek~~~~tL~~lkv~V~RN-~FG 131 (226)
T KOG3210|consen 54 LAQCDALIIPGGESTAMSLIAERTGLYDD-LYAFVHNPSKVTWGTCAGMIYLSQQLSNEKKLVKTLNLLKVKVKRN-AFG 131 (226)
T ss_pred HhhCCEEEecCCchhHHHHHHhhhhhHHH-HHHHhcCCCccceeechhhhhhhhhhcCCcchhhhhhheeEEEeec-ccc
Confidence 445689998666443210 0001112222 2222 34599999 999877765432 2 12222 333
Q ss_pred cCccccC-----------CceeEEeccchhccccCCCc--EEEEe--ecCC--cEEEEEcC---CCCcccCCC-chhhHH
Q 007779 157 EATQWSE-----------GERRAMNTFWPLLMRALPPD--VIFIA--DPEG--SIMGGGGS---IGPHYSGND-PREMRL 215 (590)
Q Consensus 157 ~hG~~s~-----------~~~~~~~ryHsl~v~~~p~~--l~v~a--~~~g--~im~~~h~---~gvQfHPEs-~~~m~L 215 (590)
...+.-+ -..|.++-.---+++.+=+. +.++. .-+| .|.|...+ .+--||||= +..-|+
T Consensus 132 ~QaqSFT~~~~~snfi~~~~~FpATFIRAPVie~ILD~I~V~~l~~~~~nG~~~iVAa~Q~~~iL~TSFHPELa~~D~R~ 211 (226)
T KOG3210|consen 132 RQAQSFTRICDFSNFIPHCNDFPATFIRAPVIEEILDPIHVQVLYKLDGNGQELIVAAKQKNNILATSFHPELAENDIRF 211 (226)
T ss_pred chhhhheehhcccccccCcccCchhheechhHHHhcCchhheEEEEecCCCcEEEEEEeccCCEeeeecChhhhcccchH
Confidence 3222211 01344443333344333233 33333 2223 58888775 899999997 455556
Q ss_pred HHHH
Q 007779 216 VGAL 219 (590)
Q Consensus 216 ~~~L 219 (590)
.+|.
T Consensus 212 HdW~ 215 (226)
T KOG3210|consen 212 HDWF 215 (226)
T ss_pred HHHH
Confidence 6554
No 180
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=22.22 E-value=2.8e+02 Score=31.04 Aligned_cols=101 Identities=15% Similarity=0.035 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCCc----c---ccchH--HH
Q 007779 253 SESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTR----F---FRSTL--FV 316 (590)
Q Consensus 253 sd~qigAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~t----~---niST~--la 316 (590)
|-.+-+-+|.+| .+|+| .|.....++|++.....+...+ ..+.+.|+|+ +... + |--|+ |.
T Consensus 24 SishRalilaaL-A~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~-~~~~v~g~g~-~~~~~~~~l~~GnSGTt~R~l 100 (428)
T COG0128 24 SISHRALLLAAL-AEGESTITNLLDSEDTLATLEALRALGARIEKEG-DTLVVRGTGG-ELKEPPAVLDCGNSGTTLRLL 100 (428)
T ss_pred cHHHHHHHHHHH-cCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC-CEEEEeCCCC-CcCCCCceeeeccchhHHHHH
Confidence 344554455555 57763 5778889999998887665433 4566777776 3222 1 22333 34
Q ss_pred HHHHhc-CCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCC
Q 007779 317 AAVRSC-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (590)
Q Consensus 317 A~vlAa-~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~ 356 (590)
.-++|. .+..++.+|..++..+==..+.|.|..+|+.++.
T Consensus 101 ~glla~~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~ 141 (428)
T COG0128 101 TGLLALGSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDG 141 (428)
T ss_pred HHHHhcCCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEe
Confidence 445554 5478999999887755444457788888888763
No 181
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=22.18 E-value=1e+02 Score=25.46 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=21.7
Q ss_pred HHHHHHHhh--cCCCCCHHHHHHHHHHhcCCcc-CCC-CCCCCHHHHHHH
Q 007779 215 LVGALREVL--AGGHLGYEEVQGVLRDVLPLQV-DNK-APGVSESLLSAF 260 (590)
Q Consensus 215 L~~~L~kl~--~G~~Lt~eEa~~a~~~Il~~~~-~~~-~g~~sd~qigAF 260 (590)
|.+|..... +|-+++++||++++--+= .-. ..+ ..++||.|+++|
T Consensus 17 LskWy~~aA~~~g~~~~~d~ARE~vYGMP-y~eWK~~~Q~~At~eQ~aaf 65 (68)
T PF06844_consen 17 LSKWYREAAEERGIEMDKDEAREIVYGMP-YDEWKAKHQTEATPEQLAAF 65 (68)
T ss_dssp HHHHHHHHHHHCT----HHHHHHHHHSS--HHHHCHCH-----HHHHHHH
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHhCCC-HHHHHHHHCCCCCHHHHHHh
Confidence 455555543 466999999999986542 000 000 457899999988
No 182
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=22.13 E-value=2.2e+02 Score=33.61 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCC----Ccc---ccch--HHHHH
Q 007779 255 SLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRF---FRST--LFVAA 318 (590)
Q Consensus 255 ~qigAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~----~t~---niST--~laA~ 318 (590)
.|..+++.|.-.+|+| .+++....++|+.....+.+.+...+-+-|.+..+. ..+ +-.| .|++.
T Consensus 324 ~~~r~L~~a~la~g~s~i~~~~~~~dv~~ti~~L~~lG~~v~~~~~~~~~i~g~~~~~~~~~~~~i~~~~s~ts~~ll~a 403 (735)
T PRK14806 324 ISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHNGRVTIHGVGLHGLKAPPGPLYMGNSGTSMRLLSG 403 (735)
T ss_pred HHHHHHHHHHhCCCcEEEcCCCccHHHHHHHHHHHHcCCEEEecCCCEEEEEcCCCCCCCCCCceeeccCchHHHHHHHH
Confidence 4445566666666654 567788888888876555421112222333332111 011 1122 24455
Q ss_pred HHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCC
Q 007779 319 VRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 355 (590)
Q Consensus 319 vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~ 355 (590)
+++....+|...|...+..+--..+.++|+.+|+++.
T Consensus 404 ~la~~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~ 440 (735)
T PRK14806 404 LLAAQSFDSVLTGDASLSKRPMERVAKPLREMGAVIE 440 (735)
T ss_pred HHhcCCCeEEEECChhhhhCChHHHHHHHHHCCCEEE
Confidence 5555556889999888776544555788888999875
No 183
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=22.06 E-value=1.4e+02 Score=33.03 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=95.3
Q ss_pred hcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCCCCCceEEccC
Q 007779 223 LAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEP 302 (590)
Q Consensus 223 ~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~~~~vD~~GtG 302 (590)
.+|. +|+|+.-+.+..-+ +.-..+.-|++.|+-.-+|++++|.....+....+.....+. -.--+|.+|-.
T Consensus 150 ~~G~-~t~e~~v~~~~~~~-------e~~~~~fpI~sklI~~~~R~~~~e~~~e~v~~~~~~~~~~~~-~VvGidL~G~e 220 (399)
T KOG1097|consen 150 ADGD-ITPEDVVAIVIAAL-------EKAKRDFPIKSKLIMCCIRHMPPEVAEETVSEAKELNKLFPN-FVVGIDLVGQE 220 (399)
T ss_pred cCCC-CCHHHHHHHHHHHH-------HHHHHhCCCcceEEEeeccCCChHHHHHHHHHHHHHHHhCCC-eEEEEecCCCC
Confidence 5666 88887777766666 221122229999999999999988887776666553222221 11135555554
Q ss_pred -CCCCCccccchHHHHH-HHhcCCCcEEeecCCCCCCCCCC-CHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchh
Q 007779 303 -YDGNTRFFRSTLFVAA-VRSCYGESCLLHGAEWMPPKGGV-TEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLRE 379 (590)
Q Consensus 303 -gDG~~t~niST~laA~-vlAa~Gv~V~kHGnr~vtsk~Gs-t~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~ 379 (590)
.+| ..+..+-++ -+++-|++..-|.+..- .|+ ...++|.-||. +..|.|+.. .
T Consensus 221 ~~~~----p~~~f~~vl~~~~~~gi~~t~HaGE~~---~~~~~v~~~LD~l~~-------------~RIGHG~~l----~ 276 (399)
T KOG1097|consen 221 DLGG----PLSLFLEVLAKAPAKGIHLTFHAGETN---GGASVVKNALDLLGT-------------ERIGHGYFL----T 276 (399)
T ss_pred CCCC----ChhhhHHHHHhhhhcCCcEEEEccccC---CChHHHHHHHHhhCC-------------ccccCceec----c
Confidence 333 233322333 33348999999999874 233 11334443332 234566643 2
Q ss_pred hChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecC
Q 007779 380 ARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGE 449 (590)
Q Consensus 380 ~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~ 449 (590)
-||.+-+...-|..-=---|++| +++|.- ..+.+....-+...|+ -+|++..
T Consensus 277 ~dp~L~~~~k~~nI~lEiCP~SN---------------~vl~~v-~d~rnhp~~~~~~~~v--P~vI~sD 328 (399)
T KOG1097|consen 277 KDPELINLLKSRNIALEICPISN---------------QVLGLV-SDLRNHPVARLLAAGV--PVVINSD 328 (399)
T ss_pred CCHHHHHHHHhcCceEEEccchh---------------hheecc-ccccccHHHHHHhCCC--CEEEeCC
Confidence 68866555444432111125555 455555 3455544555555665 5666664
No 184
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.74 E-value=1.1e+03 Score=25.92 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=80.5
Q ss_pred HHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHhhhhcCCCC------CCCCCCCceEEccCCCC
Q 007779 234 QGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR--ETDRELKAYCLAFDDELGPP------PVADVKSLTHYGEPYDG 305 (590)
Q Consensus 234 ~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~Kg--ET~eElag~~~A~~~~~~~~------~~~~~~~vD~~GtGgDG 305 (590)
..+++.++ +-.+++.-.-.++-.+.-.. .+.++.............+. .+....++-.+|+.|.|
T Consensus 77 ~~l~~~L~-------~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvG 149 (374)
T PRK14722 77 GALTKYLF-------AAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVG 149 (374)
T ss_pred HHHHHHHH-------HCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCC
Confidence 44556666 66777766666666554432 25555444444333322211 11223467789999999
Q ss_pred CCccccchHHHHHHHhcCC-CcEEeecCCCCCCCCCCCHHHHHH----hcCCCCC--CCHHHHHHHHHhc-cCceEeecc
Q 007779 306 NTRFFRSTLFVAAVRSCYG-ESCLLHGAEWMPPKGGVTEEQMLK----FMGASTN--LSVLQAKELLEDE-EIGFAYVSL 377 (590)
Q Consensus 306 ~~t~niST~laA~vlAa~G-v~V~kHGnr~vtsk~Gst~aDvLe----aLGi~i~--~s~e~a~~~Le~~-g~gf~fl~a 377 (590)
|+|+-.- +++..+...| .+|..-..+.. +.|. .+-|+ .+|+++. .++.+....+.+. +.-+++++.
T Consensus 150 KTTtiak--LA~~~~~~~G~~~V~lit~D~~--R~ga--~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDT 223 (374)
T PRK14722 150 KTTTTAK--LAARCVMRFGASKVALLTTDSY--RIGG--HEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDT 223 (374)
T ss_pred HHHHHHH--HHHHHHHhcCCCeEEEEecccc--cccH--HHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcC
Confidence 8653221 1222222345 46666554443 3344 45554 5788753 3444455555432 367888999
Q ss_pred hhhChHhHHHHhhhccc
Q 007779 378 REARPSLYSLIGLREHI 394 (590)
Q Consensus 378 ~~~~Pal~~l~~vR~~L 394 (590)
+-+.|-...+......|
T Consensus 224 aG~~~~d~~l~e~La~L 240 (374)
T PRK14722 224 IGMSQRDRTVSDQIAML 240 (374)
T ss_pred CCCCcccHHHHHHHHHH
Confidence 98888766666555554
No 185
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=21.72 E-value=1.4e+02 Score=28.94 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=58.4
Q ss_pred ceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecC-----CCCCCCCCCCHHHHHHhcC-CCCCCCHHHHHHHHHhc-
Q 007779 296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGA-----EWMPPKGGVTEEQMLKFMG-ASTNLSVLQAKELLEDE- 368 (590)
Q Consensus 296 vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGn-----r~vtsk~Gst~aDvLeaLG-i~i~~s~e~a~~~Le~~- 368 (590)
|-+.|++|.|++| +|..+.+..|++=.-.|+ -...+.-|--....++.=+ ++=+....-+...+++.
T Consensus 3 iiilG~pGaGK~T------~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d 76 (178)
T COG0563 3 ILILGPPGAGKST------LAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEAD 76 (178)
T ss_pred EEEECCCCCCHHH------HHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhc
Confidence 3468999999854 488888899998887663 2222333332233344433 22223335556666663
Q ss_pred -cCceEeecchhhChHhHHHHhhhcccC
Q 007779 369 -EIGFAYVSLREARPSLYSLIGLREHIK 395 (590)
Q Consensus 369 -g~gf~fl~a~~~~Pal~~l~~vR~~Lg 395 (590)
..+|.|...|........+-..-+++|
T Consensus 77 ~~~~~I~dg~PR~~~qa~~l~r~l~~~g 104 (178)
T COG0563 77 CKAGFILDGFPRTLCQARALKRLLKELG 104 (178)
T ss_pred ccCeEEEeCCCCcHHHHHHHHHHHHHcC
Confidence 128999888888888777666656556
No 186
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=21.50 E-value=1.1e+02 Score=24.78 Aligned_cols=41 Identities=17% Similarity=-0.032 Sum_probs=35.2
Q ss_pred CCCcccCCCchhhHHHHHHHHhhcCCCCCHHHHHHHHHHhc
Q 007779 201 IGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVL 241 (590)
Q Consensus 201 ~gvQfHPEs~~~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il 241 (590)
+..--+|.+-.|.++.+||.+...|...+++||..+...+|
T Consensus 9 ~~~~~~~~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll 49 (74)
T PF00610_consen 9 KRLKTYPNCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELL 49 (74)
T ss_dssp CSSEEECCEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHH
T ss_pred ECCEEcCCEeEhHHHHHHHHHhccccccCHHHHHHHHHHHH
Confidence 44445778888999999999887888999999999999999
No 187
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=20.88 E-value=1.3e+02 Score=24.46 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHH
Q 007779 227 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFL 261 (590)
Q Consensus 227 ~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL 261 (590)
++|.||..+.+-.+- ...+++.|||..|
T Consensus 27 ~~~~~eVe~~I~kla-------kkG~tpSqIG~iL 54 (60)
T PF08069_consen 27 KYSPEEVEELIVKLA-------KKGLTPSQIGVIL 54 (60)
T ss_dssp -S-HHHHHHHHHHHC-------CTTHCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-------HcCCCHHHhhhhh
Confidence 478899999988888 7778999999886
No 188
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=20.83 E-value=1.6e+02 Score=28.92 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=45.2
Q ss_pred HHHHHhCCceEEEeCC-CCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh-h--hHHHHHHHHhcCCCCccc-
Q 007779 60 ALIDQLGLKESDIINP-AISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA-F--KVLDTILRSAKGDLKDEE- 134 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd-~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~-g--~~~~~~i~~~~~~~PilG- 134 (590)
++++++|+++..+..- ..+..+. ...+...|+|+++. |++...-+. . ..++.|.+.+....|+.|
T Consensus 51 ~~~~~lG~~~~~~~~~~~~~~~~~--------~~~l~~ad~I~~~G--G~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~ 120 (210)
T cd03129 51 AAFERLGVEVVHLLLIDTANDPDV--------VARLLEADGIFVGG--GNQLRLLSVLRETPLLDAILKRVARGVVIGGT 120 (210)
T ss_pred HHHHHcCCceEEEeccCCCCCHHH--------HHHHhhCCEEEEcC--CcHHHHHHHHHhCChHHHHHHHHHcCCeEEEc
Confidence 6788889877755431 1111110 11255568899988 565421111 1 144454666666799999
Q ss_pred ccchHHHHhH
Q 007779 135 EVSKAQLGAF 144 (590)
Q Consensus 135 CLGhQ~i~~~ 144 (590)
|-|-.+++..
T Consensus 121 SAGA~~~~~~ 130 (210)
T cd03129 121 SAGAAVMGET 130 (210)
T ss_pred CHHHHHhhhc
Confidence 9999999987
No 189
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=20.49 E-value=3e+02 Score=30.59 Aligned_cols=112 Identities=18% Similarity=0.119 Sum_probs=70.3
Q ss_pred HHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHhhhhcCCCCC-CCC-CCCceEEccCCCCCCcccc
Q 007779 235 GVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRE-TDRELKAYCLAFDDELGPPP-VAD-VKSLTHYGEPYDGNTRFFR 311 (590)
Q Consensus 235 ~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgE-T~eElag~~~A~~~~~~~~~-~~~-~~~vD~~GtGgDG~~t~ni 311 (590)
++++.... ..+.|..|+..|+..+ ++|+ ++.++++|.-|++-+....+ +.. ...+-..|. +++.
T Consensus 3 ~~i~kk~~------g~~Lt~eE~~~~~~~i-~~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~------~l~~ 69 (405)
T TIGR02644 3 DIIRKKRD------GKKLSDEEINFFINGY-TNGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGE------VLDL 69 (405)
T ss_pred HHHHHHHc------CCCCCHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------cCCC
Confidence 45555551 3468999998777766 5665 77899999999997764432 100 001100111 1111
Q ss_pred chHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCC-------CCHHHHHHHHHh
Q 007779 312 STLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN-------LSVLQAKELLED 367 (590)
Q Consensus 312 ST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~-------~s~e~a~~~Le~ 367 (590)
+. -.|..|-|||.-++..+.-+.++=++.++|+++. -+..-..+.||.
T Consensus 70 ~~--------~~~~~vD~~gTGGdG~~iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~ 124 (405)
T TIGR02644 70 SS--------LPGPKVDKHSTGGVGDKVSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLES 124 (405)
T ss_pred cc--------cCCCeeEEeCCCCCCCCchHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHh
Confidence 11 0256899999888887776667888889999753 233467888888
No 190
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=20.49 E-value=1.6e+02 Score=25.29 Aligned_cols=39 Identities=26% Similarity=0.011 Sum_probs=34.8
Q ss_pred CCCcccCCCchhhHHHHHHHHhhcCCCCCHHHHHHHHHHhc
Q 007779 201 IGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVL 241 (590)
Q Consensus 201 ~gvQfHPEs~~~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il 241 (590)
|..+-+|.+-.|-.+++||-+. |...|++||..+...+|
T Consensus 22 ~~~~~y~~cF~GselVdWL~~~--~~~~sR~eAv~lg~~Ll 60 (83)
T cd04443 22 CGLRTYKGVFCGCDLVSWLIEV--GLAQDRGEAVLYGRRLL 60 (83)
T ss_pred ecceeccccccHHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Confidence 8888899999999999999864 66789999999999999
No 191
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=20.14 E-value=2e+02 Score=32.04 Aligned_cols=53 Identities=25% Similarity=0.177 Sum_probs=39.1
Q ss_pred ecCCcEEEEEc-----C-------CCCcccCCC--------chhhHHHHHHHHhhcCC----------CCCHHHHHHHHH
Q 007779 189 DPEGSIMGGGG-----S-------IGPHYSGND--------PREMRLVGALREVLAGG----------HLGYEEVQGVLR 238 (590)
Q Consensus 189 ~~~g~im~~~h-----~-------~gvQfHPEs--------~~~m~L~~~L~kl~~G~----------~Lt~eEa~~a~~ 238 (590)
.++|++..++. . =|+-|||+. -.+|.+++.|.-+=-|. .+|..|...+.+
T Consensus 43 ~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~r 122 (411)
T COG0334 43 MDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSR 122 (411)
T ss_pred EcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHH
Confidence 57787666543 2 799999998 23577999988875443 588888888887
Q ss_pred Hhc
Q 007779 239 DVL 241 (590)
Q Consensus 239 ~Il 241 (590)
..+
T Consensus 123 af~ 125 (411)
T COG0334 123 AFG 125 (411)
T ss_pred HHH
Confidence 777
No 192
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=20.05 E-value=2.7e+02 Score=30.35 Aligned_cols=101 Identities=17% Similarity=0.002 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCC----Cccc---cchH--H
Q 007779 252 VSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRFF---RSTL--F 315 (590)
Q Consensus 252 ~sd~qigAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~----~t~n---iST~--l 315 (590)
-+..+.+-++.++ ..|+| .+++....+++++....+.. ..+.+-|.+..|. ..++ ..|. |
T Consensus 23 ks~~~r~l~~a~L-a~g~s~i~~~~~~~dv~~~~~~L~~lG~~i~~---~~~~i~~~~~~~~~~~~~~i~~~~sg~~~r~ 98 (435)
T PRK02427 23 KSISHRALLLAAL-AEGETTITNLLRSEDTLATLNALRALGVEIED---DEVVVEGVGGGGLKEPEDVLDCGNSGTTMRL 98 (435)
T ss_pred hHHHHHHHHHHHh-cCCCEEEcCCCccHHHHHHHHHHHHcCCeEEc---ceEEEEccCCCCCCCCCCEEEccCchHHHHH
Confidence 3444554333334 56664 56788899999887665543 2222333333221 1111 1122 2
Q ss_pred HHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCC
Q 007779 316 VAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (590)
Q Consensus 316 aA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~ 356 (590)
...++|.++-++..+|...+..+-=..+.+.|+.||+++..
T Consensus 99 l~~laa~~~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~~ 139 (435)
T PRK02427 99 LTGLLALQPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEG 139 (435)
T ss_pred HHHHHHhCCCeEEEECChhhccCChHHHHHHHHHCCCEEEe
Confidence 22233344558989987654432223347899999998753
Done!