Query 007779
Match_columns 590
No_of_seqs 378 out of 2506
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkm_A Anthranilate phosphorib 100.0 1.2E-78 3.9E-83 641.6 33.1 336 213-589 4-342 (346)
2 1vqu_A Anthranilate phosphorib 100.0 8.4E-78 2.9E-82 639.6 35.7 340 207-587 17-373 (374)
3 3r88_A Anthranilate phosphorib 100.0 1.5E-77 5E-82 638.4 36.8 337 214-590 25-370 (377)
4 1khd_A Anthranilate phosphorib 100.0 1.1E-77 3.6E-82 633.0 34.6 331 212-585 10-344 (345)
5 2elc_A Trp D, anthranilate pho 100.0 7.5E-77 2.6E-81 623.2 34.8 324 217-587 2-328 (329)
6 1o17_A Anthranilate PRT, anthr 100.0 1.7E-76 5.8E-81 623.8 31.9 330 213-588 1-332 (345)
7 3h5q_A PYNP, pyrimidine-nucleo 100.0 3E-58 1E-62 494.9 28.5 297 212-588 3-321 (436)
8 1brw_A PYNP, protein (pyrimidi 100.0 2.1E-57 7.3E-62 489.3 30.9 293 213-588 1-318 (433)
9 1uou_A Thymidine phosphorylase 100.0 5.5E-57 1.9E-61 489.5 30.9 291 215-588 30-346 (474)
10 2tpt_A Thymidine phosphorylase 100.0 2.6E-57 8.8E-62 489.6 23.9 304 213-588 2-322 (440)
11 2dsj_A Pyrimidine-nucleoside ( 100.0 6E-56 2E-60 475.5 26.8 294 213-588 1-311 (423)
12 1qdl_B Protein (anthranilate s 99.9 2.9E-27 1E-31 229.7 12.8 158 51-220 4-193 (195)
13 1i1q_B Anthranilate synthase c 99.9 6.1E-27 2.1E-31 226.7 12.7 162 50-223 2-190 (192)
14 3r75_A Anthranilate/para-amino 99.9 3.4E-25 1.2E-29 250.4 12.3 161 49-225 447-636 (645)
15 1a9x_B Carbamoyl phosphate syn 99.9 1.4E-24 4.9E-29 231.0 12.2 159 48-222 190-373 (379)
16 2a9v_A GMP synthase; structura 99.9 2.9E-23 9.9E-28 204.5 10.0 157 49-222 14-199 (212)
17 1wl8_A GMP synthase [glutamine 99.9 1E-22 3.5E-27 196.3 12.8 155 51-222 3-186 (189)
18 2vpi_A GMP synthase; guanine m 99.8 1.7E-21 5.8E-26 192.9 9.0 160 49-224 25-212 (218)
19 4gud_A Imidazole glycerol phos 99.8 3E-22 1E-26 195.9 3.4 151 50-227 4-207 (211)
20 1o1y_A Conserved hypothetical 99.8 5.1E-21 1.8E-25 191.8 12.0 148 60-221 31-199 (239)
21 3uow_A GMP synthetase; structu 99.8 4.5E-21 1.5E-25 213.9 12.1 170 49-231 8-239 (556)
22 3m3p_A Glutamine amido transfe 99.8 6.3E-21 2.2E-25 192.7 11.9 147 60-220 22-189 (250)
23 3l7n_A Putative uncharacterize 99.8 1.3E-20 4.3E-25 188.4 10.7 148 60-221 19-193 (236)
24 3tqi_A GMP synthase [glutamine 99.8 8.6E-21 2.9E-25 210.5 9.7 164 49-229 11-212 (527)
25 2ywj_A Glutamine amidotransfer 99.8 8.9E-21 3E-25 182.0 8.4 151 50-222 2-183 (186)
26 2ywb_A GMP synthase [glutamine 99.8 2.5E-20 8.5E-25 205.7 11.7 164 51-230 2-192 (503)
27 1gpm_A GMP synthetase, XMP ami 99.8 1.9E-20 6.6E-25 207.6 10.8 168 49-232 8-212 (525)
28 1gpw_B Amidotransferase HISH; 99.8 1.4E-20 4.7E-25 182.9 7.0 149 49-222 1-197 (201)
29 2vxo_A GMP synthase [glutamine 99.8 3.8E-20 1.3E-24 210.9 11.0 166 50-231 31-224 (697)
30 1ka9_H Imidazole glycerol phos 99.8 6.4E-20 2.2E-24 178.3 7.1 150 49-220 3-198 (200)
31 2w7t_A CTP synthetase, putativ 99.8 1.2E-19 4E-24 185.6 7.4 164 53-224 21-256 (273)
32 1l9x_A Gamma-glutamyl hydrolas 99.8 2.7E-19 9.1E-24 186.5 6.4 155 60-226 59-280 (315)
33 3fij_A LIN1909 protein; 11172J 99.8 1.8E-18 6.1E-23 174.8 12.1 152 62-224 37-242 (254)
34 1vco_A CTP synthetase; tetrame 99.7 1.7E-18 5.9E-23 191.7 7.6 161 51-223 310-544 (550)
35 2ywd_A Glutamine amidotransfer 99.7 1.8E-18 6E-23 166.2 6.3 149 55-222 12-189 (191)
36 2nv0_A Glutamine amidotransfer 99.7 9.9E-18 3.4E-22 162.1 9.1 156 50-223 3-188 (196)
37 1q7r_A Predicted amidotransfer 99.7 1.6E-17 5.5E-22 163.9 8.4 157 48-223 23-210 (219)
38 1s1m_A CTP synthase; CTP synth 99.7 1.2E-17 4.1E-22 184.8 6.6 160 51-223 299-537 (545)
39 2iss_D Glutamine amidotransfer 99.7 8.7E-17 3E-21 157.4 8.7 153 48-220 20-205 (208)
40 2v4u_A CTP synthase 2; pyrimid 99.6 2.2E-16 7.6E-21 162.6 8.1 125 94-223 88-275 (289)
41 3nva_A CTP synthase; rossman f 99.6 1E-15 3.4E-20 167.4 9.4 160 53-222 305-532 (535)
42 3d54_D Phosphoribosylformylgly 99.6 2E-15 7E-20 147.1 10.5 143 60-222 21-211 (213)
43 1jvn_A Glutamine, bifunctional 99.6 1.3E-16 4.6E-21 177.9 1.5 157 50-222 6-215 (555)
44 2abw_A PDX2 protein, glutamina 99.4 1.6E-13 5.4E-18 135.7 4.5 145 60-222 20-213 (227)
45 2vdj_A Homoserine O-succinyltr 99.0 1.3E-09 4.3E-14 112.7 10.6 128 95-225 98-254 (301)
46 2h2w_A Homoserine O-succinyltr 98.8 8.3E-09 2.8E-13 107.0 10.4 128 95-225 110-265 (312)
47 1oi4_A Hypothetical protein YH 94.4 0.052 1.8E-06 51.5 6.0 110 27-144 8-134 (193)
48 3l4e_A Uncharacterized peptida 93.9 0.019 6.5E-07 55.8 1.9 71 60-144 51-129 (206)
49 3ugj_A Phosphoribosylformylgly 91.3 0.12 4E-06 62.8 4.3 87 46-144 1045-1152(1303)
50 1fy2_A Aspartyl dipeptidase; s 91.1 0.05 1.7E-06 53.5 0.7 72 56-145 49-130 (229)
51 3l18_A Intracellular protease 89.6 0.29 9.8E-06 44.9 4.4 97 46-144 2-111 (168)
52 2rk3_A Protein DJ-1; parkinson 85.9 0.64 2.2E-05 43.8 4.5 95 47-144 4-115 (197)
53 2vrn_A Protease I, DR1199; cys 85.2 0.64 2.2E-05 43.4 4.1 97 47-144 10-124 (190)
54 2ab0_A YAJL; DJ-1/THIJ superfa 78.9 0.87 3E-05 43.4 2.4 96 48-144 4-116 (205)
55 3ttv_A Catalase HPII; heme ori 77.8 4.7 0.00016 46.1 8.3 113 29-144 583-708 (753)
56 4e08_A DJ-1 beta; flavodoxin-l 76.5 2.1 7.1E-05 40.0 4.2 95 47-144 6-116 (190)
57 4hcj_A THIJ/PFPI domain protei 75.9 2.7 9.3E-05 39.3 4.9 93 50-144 12-117 (177)
58 3ej6_A Catalase-3; heme, hydro 72.7 15 0.00051 41.7 10.5 93 43-144 534-646 (688)
59 3cne_A Putative protease I; st 71.2 5.5 0.00019 36.4 5.7 95 47-144 3-120 (175)
60 3uk7_A Class I glutamine amido 69.6 4.9 0.00017 42.0 5.5 99 44-144 203-330 (396)
61 1vhq_A Enhancing lycopene bios 68.4 6.4 0.00022 38.0 5.7 49 95-144 89-149 (232)
62 3ot1_A 4-methyl-5(B-hydroxyeth 66.0 3 0.0001 39.7 2.7 98 45-143 8-120 (208)
63 3uk7_A Class I glutamine amido 65.8 6.5 0.00022 41.0 5.6 97 46-144 12-137 (396)
64 2iuf_A Catalase; oxidoreductas 64.5 14 0.00048 41.9 8.2 92 44-144 527-648 (688)
65 3efe_A THIJ/PFPI family protei 63.2 16 0.00056 34.6 7.4 95 47-144 6-121 (212)
66 1sy7_A Catalase 1; heme oxidat 62.6 9 0.00031 43.7 6.2 100 45-147 533-647 (715)
67 3f5d_A Protein YDEA; unknow pr 62.2 10 0.00035 36.1 5.8 91 48-144 5-109 (206)
68 2fex_A Conserved hypothetical 54.6 9.7 0.00033 35.2 4.0 46 96-144 63-110 (188)
69 3gra_A Transcriptional regulat 53.0 20 0.00068 33.8 6.0 46 95-144 70-117 (202)
70 3l3b_A ES1 family protein; ssg 52.1 27 0.00094 34.1 7.0 50 96-146 107-169 (242)
71 1j8m_F SRP54, signal recogniti 52.0 1.6E+02 0.0055 29.3 12.9 156 213-382 5-193 (297)
72 3fse_A Two-domain protein cont 48.9 19 0.00065 37.6 5.5 95 46-144 10-121 (365)
73 1vkm_A Conserved hypothetical 46.5 20 0.00068 36.4 4.9 145 266-448 71-227 (297)
74 3ol3_A Putative uncharacterize 45.9 1.1E+02 0.0037 26.5 8.8 59 225-285 41-99 (107)
75 3fyb_A Protein of unknown func 42.4 33 0.0011 29.3 4.8 49 215-264 47-99 (104)
76 1u9c_A APC35852; structural ge 40.8 8.7 0.0003 36.5 1.3 49 95-144 88-138 (224)
77 2lky_A Uncharacterized protein 40.5 40 0.0014 29.4 5.3 54 226-285 39-92 (112)
78 4ex8_A ALNA; alpha/beta/alpha- 39.2 13 0.00045 38.0 2.3 138 249-398 61-231 (316)
79 2px0_A Flagellar biosynthesis 38.2 1.1E+02 0.0037 30.5 9.1 130 249-384 51-197 (296)
80 2m0n_A Putative uncharacterize 36.1 1.2E+02 0.0041 26.4 7.6 55 225-285 38-99 (112)
81 2kvc_A Putative uncharacterize 35.1 53 0.0018 28.2 5.1 54 226-285 37-90 (103)
82 1zu4_A FTSY; GTPase, signal re 34.5 1.5E+02 0.0051 29.9 9.5 110 215-334 18-143 (320)
83 3noq_A THIJ/PFPI family protei 33.9 25 0.00086 33.9 3.4 48 95-144 64-113 (231)
84 1ejd_A MURA, EPT, UDP-N-acetyl 31.3 18 0.00061 38.2 1.9 170 257-448 26-217 (419)
85 1vma_A Cell division protein F 30.6 1.7E+02 0.0058 29.4 9.1 107 215-333 30-141 (306)
86 1l6x_B Minimized B-domain of p 29.7 1E+02 0.0035 21.1 4.7 32 253-284 2-33 (34)
87 3ewn_A THIJ/PFPI family protei 29.5 43 0.0015 32.9 4.3 93 48-144 25-133 (253)
88 3n7t_A Macrophage binding prot 28.3 19 0.00064 35.5 1.3 49 95-144 104-154 (247)
89 1rw7_A YDR533CP; alpha-beta sa 28.1 13 0.00046 36.0 0.2 48 96-144 98-147 (243)
90 3bhn_A THIJ/PFPI domain protei 26.2 22 0.00076 34.6 1.5 94 47-144 21-128 (236)
91 2v3c_C SRP54, signal recogniti 25.4 3.4E+02 0.012 28.6 10.6 156 214-383 7-194 (432)
92 2ej7_A HCG3 gene; HCG3 protein 25.4 50 0.0017 26.2 3.2 32 344-383 9-40 (82)
93 3mgk_A Intracellular protease/ 24.7 21 0.00073 33.8 1.0 47 96-144 65-113 (211)
94 3kkl_A Probable chaperone prot 24.6 22 0.00075 34.8 1.1 49 95-144 97-147 (244)
95 3dm5_A SRP54, signal recogniti 23.9 2.9E+02 0.0098 29.4 9.7 160 213-382 8-195 (443)
96 1iur_A KIAA0730 protein; DNAJ 23.3 43 0.0015 27.6 2.4 37 339-383 11-47 (88)
97 2kn2_A Calmodulin; S MAPK phos 23.0 2.6E+02 0.0088 21.4 7.3 46 215-266 31-76 (92)
98 1rf6_A 5-enolpyruvylshikimate- 22.3 1E+02 0.0034 32.5 5.7 101 255-356 22-138 (427)
99 1n57_A Chaperone HSP31, protei 22.2 43 0.0015 33.5 2.7 50 95-145 144-195 (291)
100 2dn9_A DNAJ homolog subfamily 21.5 58 0.002 25.6 2.8 32 344-383 7-38 (79)
101 2yua_A Williams-beuren syndrom 21.3 73 0.0025 26.4 3.6 32 344-383 17-48 (99)
102 2dmx_A DNAJ homolog subfamily 20.9 45 0.0015 27.2 2.2 37 337-383 4-40 (92)
103 2o35_A Hypothetical protein DU 20.1 69 0.0024 27.4 3.0 48 215-263 48-99 (105)
No 1
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.2e-78 Score=641.60 Aligned_cols=336 Identities=21% Similarity=0.296 Sum_probs=291.1
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~ 292 (590)
|..+++|+|+.+|++||+||++++|+.|| +|+++|+|+||||||+|+||||+||++||++||++++.++++++
T Consensus 4 ~~~~e~l~~~~~~~~Lt~eEa~~~~~~il-------~G~~~d~QiaAfL~alr~kget~eEi~g~~~am~~~~~~v~~~~ 76 (346)
T 4hkm_A 4 ITPQQALQRTIEHREIFHDEMVDLMRQIM-------RGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRVEVTD 76 (346)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCSC
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCCCC
Confidence 34788999999999999999999999999 99999999999999999999999999999999999998887654
Q ss_pred -CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCc
Q 007779 293 -VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIG 371 (590)
Q Consensus 293 -~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~g 371 (590)
.+.||+|||||||.+|||+||+ +|+|+|++|+||+|||||+++|++|| +|+||+||+++++++++++++|++ .|
T Consensus 77 ~~~~vD~~gTGGdg~~t~niSt~-~a~v~Aa~G~~V~khG~r~~ss~~Gs--aD~LeaLG~~~~ls~~~~~~~l~~--~g 151 (346)
T 4hkm_A 77 RRHMVDIVGTGGDGSHTFNISTC-AMFVAAAGGAKVAKHGNRSVSSKSGS--ADALEALGAVIELQPEQVAASLAQ--TG 151 (346)
T ss_dssp CTTEEEEECC------CCCHHHH-HHHHHHHTTCEEEEEC---------C--HHHHHTTTCCCCCCHHHHHHHHHH--HS
T ss_pred CccceeecCCCCCCccccCcHHH-HHHHHHhcCCCeeecCCCCCCCCcCH--HHHHHHcCCCcccCHHHHHHHHHh--cC
Confidence 3479999999999999999998 99999999999999999999999999 999999999999999999999999 56
Q ss_pred eEeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCC
Q 007779 372 FAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEG 451 (590)
Q Consensus 372 f~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG 451 (590)
|+|+++|.|||+|++++++|++||+||++++...+ +||+++++||+||||++|.++++++++.+|.++++||||.||
T Consensus 152 ~~fl~a~~~~Pa~k~l~~~R~~lg~rT~fn~lgpL---~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~a~vv~g~~G 228 (346)
T 4hkm_A 152 IGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPL---TNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDG 228 (346)
T ss_dssp EEEECHHHHCGGGGGTHHHHHHHCSCCTHHHHGGG---CCTTCCSEEEEECSSTHHHHHHHHHHHHTTCSEEEEEEETTT
T ss_pred cchhchhhhChhHHHHhhheeccCCCchhhhcccc---cCCCCCcceEeeccCHHHhHHHHHHHHHcCCCeEEEEecCCC
Confidence 77788999999999999999999999988876653 789999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHH
Q 007779 452 ALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAAL 529 (590)
Q Consensus 452 ~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL 529 (590)
+||+++.. +|.+++ .+|++.+ ++++|+|||++..+.+.+ ++++.+|+++++++|
T Consensus 229 ~dEis~~~---------------------~t~v~~~~~g~i~~---~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~~~vl 284 (346)
T 4hkm_A 229 MDELSLGA---------------------GTLVGELRDGQVHE---YEVHPEDFGIAMSASRNLKVADAAESRAMLLQVL 284 (346)
T ss_dssp BSSCCSSS---------------------CEEEEEEETTEEEE---EEECGGGGTCCCCC---------CCHHHHHHHHH
T ss_pred chhhhhcc---------------------CceEEEEeCCceeE---ecCCHHHcCCccCcccccCCCCHHHHHHHHHHHH
Confidence 99998643 355654 5787754 999999999998877765 679999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccC
Q 007779 530 RGEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKL 589 (590)
Q Consensus 530 ~G~~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~~ 589 (590)
+|++++.+|.|++|||++||++| ++.|++||+++|+++|+||+|+++|++|+++++++
T Consensus 285 ~g~~~~~~d~v~lnaa~~L~~~g--~a~sl~eg~~~A~~~l~sG~A~~~l~~~i~~s~~~ 342 (346)
T 4hkm_A 285 DNVPGPALDIVALNAGAALYVAG--VADSIADGIVRARQVLADGSARACLDAYVAFTQQA 342 (346)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 78999999999999999999999999999999864
No 2
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=100.00 E-value=8.4e-78 Score=639.60 Aligned_cols=340 Identities=19% Similarity=0.262 Sum_probs=300.8
Q ss_pred CCC--chhhHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhc
Q 007779 207 GND--PREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDE 284 (590)
Q Consensus 207 PEs--~~~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~ 284 (590)
|.| +..|+++++|+++.+|++||+||++++|+.|| +|+++|+|+||||||+|+||||+|||+||++||+++
T Consensus 17 ~~~~~~~~~~~~~~i~kl~~G~~Lt~eEa~~~~~~il-------~G~~~~~QiaAfL~Alr~kGet~eEiag~~~am~~~ 89 (374)
T 1vqu_A 17 PTSTQESSTSWYLLLQQLIDGESLSRSQAAELMQGWL-------SEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQ 89 (374)
T ss_dssp --------CCTHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCccCCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 555 44566899999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCC--------CCCC--CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCC
Q 007779 285 LGPP--------PVAD--VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGAST 354 (590)
Q Consensus 285 ~~~~--------~~~~--~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i 354 (590)
+.++ +++. .+.||+|||||||.+|||+||+ +|+|+|++|+||+|||||++||++|| +|+||+||+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~-~A~v~Aa~Gv~VaKHGnR~~ss~~Gs--aDvLEaLGv~~ 166 (374)
T 1vqu_A 90 SKMGTGENYSQLPITNSPFSIIDTCGTGGDGSSTFNISTA-VAFVAAAYGVPVAKHGNRSASSLTGS--ADVLEALGVNL 166 (374)
T ss_dssp CCC-----------CCSSSCCEEEEECC---CCBCCHHHH-HHHHHHHTTCCEEEEEECC--CTTCH--HHHHHHTTCCT
T ss_pred CCccccccccccCccccCCCeeEEeCCCCCCCCccchHHH-HHHHHHhCCCCEEEECCCCCCCCCCH--HHHHHhCCCCC
Confidence 9877 5542 3579999999999999999998 99999999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHH
Q 007779 355 NLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLML 434 (590)
Q Consensus 355 ~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~ 434 (590)
++++++++++|++ .||+|+++|.|||+|++++++|++||+||+++.... ++||+++++||+||||++|.++|+++
T Consensus 167 ~~~~e~~~~~l~~--~gi~fl~a~~~hPa~k~l~~~R~~lg~rTvfNilgp---L~NPa~~~~qv~GV~~~~~~~~~a~~ 241 (374)
T 1vqu_A 167 GASPEKVQAALQE--VGITFLFAPGWHPALKAVATLRRTLRIRTVFNLLGP---LVNPLRPTGQVVGLFTPKLLTTVAQA 241 (374)
T ss_dssp TCCHHHHHHHHHH--TSEEEEEETTSSGGGGGGHHHHHHHCSCCHHHHHGG---GCCTTCCSEEEEECSCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHH--CCEEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHH---hcCCCCCCceEEeecCHHHHHHHHHH
Confidence 9999999999999 566667799999999999999999999997777544 36788889999999999999999999
Q ss_pred HHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCc
Q 007779 435 MKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPR 513 (590)
Q Consensus 435 l~~lG~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~ 513 (590)
++.+|.++++||||.||+||+++.. +|.|++ .+|+++ .|+|+|++||++..++.+
T Consensus 242 l~~lG~~~alVv~G~~G~dE~s~~~---------------------~t~v~~~~~g~~~---~~~i~p~d~Gl~~~~~~~ 297 (374)
T 1vqu_A 242 LDNLGKQKAIVLHGRERLDEAGLGD---------------------LTDLAVLSDGELQ---LTTINPQEVGVTPAPIGA 297 (374)
T ss_dssp HHHTTCSEEEEEEETTTBSSCCSSS---------------------CEEEEEEETTEEE---EEEECGGGGTCCCCCGGG
T ss_pred HHHcCCCeEEEEECCCCccccccCC---------------------ceEEEEEeCCEEE---EEEECHHHCCCccccccc
Confidence 9999999999999999999998643 356664 477765 499999999999887766
Q ss_pred c-CCCHHHHHHHHHHHHCCCCCchhH-HHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Q 007779 514 A-DRSVSKNIELGLAALRGEKGPTYD-RIVLNAGMVDHLLGCDGAE--DVSVAMDRAREAIDSGKALKRLLNYIKISH 587 (590)
Q Consensus 514 ~-~~~~~~na~~~~~vL~G~~~~~~d-~v~lNAa~~L~l~g~g~a~--s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~ 587 (590)
+ ++++++|+++++++|+|+.++.+| .|++|||++||+.| +++ ++++|+++|+++|+||+|+++|++|+++++
T Consensus 298 l~~g~~~e~a~~~~~vL~G~~~~~~d~~v~~naa~~L~~~g--~~~~~~~~eg~~~A~~~i~sG~A~~~l~~~v~~~~ 373 (374)
T 1vqu_A 298 LRGGDVQENAEILKAVLQGKGTQAQQDAVALNAALALQVAG--AVPLLDHAQGVSVAKEILQTGTAWAKLAQLVYFLG 373 (374)
T ss_dssp GBCCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT--SSCTTCHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 5 679999999999999999788999 99999999999986 778 999999999999999999999999999886
No 3
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=100.00 E-value=1.5e-77 Score=638.36 Aligned_cols=337 Identities=19% Similarity=0.239 Sum_probs=309.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC-
Q 007779 214 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD- 292 (590)
Q Consensus 214 ~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~- 292 (590)
.+.++|+++.+|++||+||++++|+.|| +|+++|+|+||||||+|+||||+|||+||++||++++.+++++.
T Consensus 25 t~~~il~~l~~g~~Ls~eEa~~~~~~i~-------~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~v~~~~~ 97 (377)
T 3r88_A 25 SWPQILGRLTDNRDLARGQAAWAMDQIM-------TGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTV 97 (377)
T ss_dssp CHHHHHHHHHTTCCCCTTHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCTTCS
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCcCCCccC
Confidence 4899999999999999999999999999 99999999999999999999999999999999999998877643
Q ss_pred -CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCc
Q 007779 293 -VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIG 371 (590)
Q Consensus 293 -~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~g 371 (590)
.+.||+|||||||++|||+||+ +|+|+|++|+||+|||||++||++|| +|+||+||+++++++++++++|++ .|
T Consensus 98 ~~~~vD~~gTGGdg~~T~niSt~-~A~v~Aa~Gv~VaKHGnR~~ss~~Gs--aDvLEaLGv~~~l~~e~~~~~l~~--~g 172 (377)
T 3r88_A 98 PDDAVDVVGTGGDGVNTVNLSTM-AAIVVAAAGVPVVKHGNRAASSLSGG--ADTLEALGVRIDLGPDLVARSLAE--VG 172 (377)
T ss_dssp CTTCEEEEECCCCSCCBCCHHHH-HHHHHHHTTCCEEEEECCCSSSSCCH--HHHHHHTTCCCCCCHHHHHHHHHH--HS
T ss_pred CCCCeEEeCCCCCCcCccccHHH-HHHHHHhcCCeEEeECCCCCCCcccH--HHHHHHcCCCcccchHHHHHHHHH--hc
Confidence 3579999999999999999998 99999999999999999999999999 999999999999999999999999 56
Q ss_pred eEeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCC
Q 007779 372 FAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEG 451 (590)
Q Consensus 372 f~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG 451 (590)
|+|+++|.|||+|++++++|++||+||+++....+ +||+++++||+||||++|.++|+++++.+| ++++||||.||
T Consensus 173 i~fl~a~~~hPa~k~l~~vR~~Lg~rTifN~lgpL---~NPa~~~~~liGv~~~~l~~~~a~~l~~~~-~~a~vv~G~dG 248 (377)
T 3r88_A 173 IGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPL---TNPARPRAGLIGCAFADLAEVMAGVFAARR-SSVLVVHGDDG 248 (377)
T ss_dssp EEEEEHHHHCGGGHHHHHHHHHHCSCCGGGGHHHH---CCTTCCSEEEEECSCTTTHHHHHHHHHHTT-CEEEEEEETTS
T ss_pred cccccchhhCHHHHHHHHHHHHhccCchhhhHHHh---cCcccccccccCCCCHHHhHHHHHHHHhcC-CeeEEecCCCC
Confidence 66677999999999999999999999998886654 789999999999999999999999999998 69999999999
Q ss_pred ccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHH
Q 007779 452 ALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAAL 529 (590)
Q Consensus 452 ~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL 529 (590)
+||++... +|.+++ .+|++++ ++++|+|||++..+++++ ++++++|+++++++|
T Consensus 249 lDEis~~~---------------------~t~v~~~~~g~i~~---~~i~P~d~Gl~~~~~~~l~gg~~~ena~~~~~vL 304 (377)
T 3r88_A 249 LDELTTTT---------------------TSTIWRVAAGSVDK---LTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVL 304 (377)
T ss_dssp CSSCCSSS---------------------CEEEEEEETTEEEE---EEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHH
T ss_pred Cceeeccc---------------------ccceEEEeeceeEE---EeccccccCCCcCCHHhccCCCHHHHHHHHHHHH
Confidence 99998543 356664 5777754 999999999999988876 789999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccCC
Q 007779 530 RGEKGPTYDRIVLNAGMVDHLLGC-----DGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKLK 590 (590)
Q Consensus 530 ~G~~~~~~d~v~lNAa~~L~l~g~-----g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~~~ 590 (590)
+|++++.+|.|++|||++||+.|. +.+.|++||+++|+++|+||+|+++|++|+++|++++
T Consensus 305 ~G~~~~~~d~v~lNaa~~l~~~g~~~~~~~~~~sl~eG~~~A~e~l~sG~A~~kl~~~i~~s~~~~ 370 (377)
T 3r88_A 305 GGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQIL 370 (377)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHTC-
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998761 1234799999999999999999999999999999874
No 4
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=100.00 E-value=1.1e-77 Score=633.01 Aligned_cols=331 Identities=18% Similarity=0.256 Sum_probs=296.6
Q ss_pred hhHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCC
Q 007779 212 EMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA 291 (590)
Q Consensus 212 ~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~ 291 (590)
.|+++++|+++.+|++||+||++++|+.|| +|+++|+|+||||||+|+||||+|||+||++||++++.+++++
T Consensus 10 ~~~~~~~i~kl~~g~~Lt~eEa~~~~~~il-------~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~ 82 (345)
T 1khd_A 10 IFTHQPILEKLFKSQSMTQEESHQLFAAIV-------RGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRP 82 (345)
T ss_dssp --CCHHHHHHHHTTCCCCHHHHHHHHHHHT-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred ccCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCC
Confidence 356889999999999999999999999999 9999999999999999999999999999999999999887764
Q ss_pred CCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCC-CCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccC
Q 007779 292 DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPP-KGGVTEEQMLKFMGASTNLSVLQAKELLEDEEI 370 (590)
Q Consensus 292 ~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vts-k~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~ 370 (590)
..+.||+|||||||.+|||+||+ +|+|+|++|+||+|||||++|| ++|| +|+||+||+++++++++++++|++ .
T Consensus 83 ~~~~vD~~gTGGdg~~tfNiSt~-~A~v~Aa~Gv~VakHGnr~~ss~~~Gs--aDvLeaLGv~~~~~~~~~~~~l~~--~ 157 (345)
T 1khd_A 83 DYDFADIVGTGGDGTNSINISTA-SAFVAASCGAKVAKHGNRSVCQPLAGS--CDLLQAFGIRLDMSAEDSRQALDD--L 157 (345)
T ss_dssp SSCCEEEEECCCCSSCBCCCHHH-HHHHHHHHTCCEEEEECC-----------CHHHHHTTCCTTCCHHHHHHHHHH--H
T ss_pred CCCeeeecCCCCCCCCccchHHH-HHHHHHhCCCcEEEeCCCCCCCCcccH--HHHHHhCCCCCCCCHHHHHHHHHH--C
Confidence 33589999999999999999998 9999999999999999999999 9999 899999999999999999999999 5
Q ss_pred ceEeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCC
Q 007779 371 GFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEE 450 (590)
Q Consensus 371 gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~e 450 (590)
||+|+++|.|||+|++++++|++||+||+++....+ +||+++++||+||||++|.++|+++++.+|.++++|||| |
T Consensus 158 gi~fl~a~~~hPa~k~l~~~R~~Lg~rTvfn~lgpL---~nPa~~~~~v~GV~~~~~~~~~a~~l~~lG~~~a~vv~G-d 233 (345)
T 1khd_A 158 NVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPL---INPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHG-G 233 (345)
T ss_dssp SEEEEEHHHHCGGGGGGHHHHHHHCSCCTHHHHGGG---CCTTCCSEEEEECSSGGGHHHHHHHHHHTTCSEEEEEEE-T
T ss_pred CEEEEehhhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCcCCCeEEEeecCHHHHHHHHHHHHHhCCCeEEEEeC-C
Confidence 666677999999999999999999999988885543 788899999999999999999999999999999999999 9
Q ss_pred CccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHH
Q 007779 451 GALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAA 528 (590)
Q Consensus 451 G~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~v 528 (590)
|+||+++.+ +|.+++ .+|++++ |+|+|++||++..+++++ ++++++|+++++++
T Consensus 234 G~dEis~~~---------------------~t~v~~~~~g~i~~---~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~v 289 (345)
T 1khd_A 234 GMDEVAIHT---------------------PTQVAELNNGEIES---YQLSPQDFGLQSYSLNALQGGTPEENRDILARL 289 (345)
T ss_dssp TBSSCCSSS---------------------CEEEEEEETTEEEE---EEECGGGGTCCCBCGGGGBCCSHHHHHHHHHHH
T ss_pred CcceecCCC---------------------ceEEEEEeCCEEEE---EEECHHHcCCCcCCccccCCCCHHHHHHHHHHH
Confidence 999998653 356664 4777654 999999999999888775 68999999999999
Q ss_pred HCCCCC-chhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHH
Q 007779 529 LRGEKG-PTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKI 585 (590)
Q Consensus 529 L~G~~~-~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~ 585 (590)
|+|+.+ +.+|.|++|||++||+.| + +|+++|+++|+++|+||+|+++|++|++.
T Consensus 290 L~G~~~~~~~d~v~~naa~~L~~~g--~-~~~~eg~~~A~~~i~sG~A~~~l~~~~~a 344 (345)
T 1khd_A 290 LQGKGDAAHARQVAANVALLLKLFG--Q-DNLRHNAQLALETIRSGTAFERVTALAAR 344 (345)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHTTT--C-CCHHHHHHHHHHHHHHTHHHHHHHHHHTC
T ss_pred HCCCCCccHHHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 999966 899999999999999986 7 89999999999999999999999999863
No 5
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=100.00 E-value=7.5e-77 Score=623.18 Aligned_cols=324 Identities=24% Similarity=0.333 Sum_probs=297.7
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCCCCCc
Q 007779 217 GALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSL 296 (590)
Q Consensus 217 ~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~~~~v 296 (590)
++|+++.+|++||+||++++|+.|| +|+++|+|+||||||+|+||||+|||+||++||++++.+++++..+.|
T Consensus 2 ~~l~k~~~g~~Lt~eEa~~~~~~i~-------~g~~~~~QiaAfL~alr~kget~~Eiag~~~am~~~~~~~~~~~~~~v 74 (329)
T 2elc_A 2 DAVKKAILGEVLEEEEAYEVMRALM-------AGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRRPLL 74 (329)
T ss_dssp CHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCCCSSEE
T ss_pred hHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCee
Confidence 4789999999999999999999999 999999999999999999999999999999999999988876433579
Q ss_pred eEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeec
Q 007779 297 THYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVS 376 (590)
Q Consensus 297 D~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~ 376 (590)
|+|||||||.+|||+||+ +|+|+|++|+||+|||||++||++|| +|+||+||+++++++++++++|++ .||+|++
T Consensus 75 D~~gTGGdg~~tfNiSt~-~a~v~Aa~Gv~V~kHGnr~~ss~~Gs--aDvLeaLG~~~~~~~~~~~~~l~~--~g~~fl~ 149 (329)
T 2elc_A 75 DIVGTGGDGKGLMNLSTL-AALVAAAGGVAVAKHGNRAASSRAGS--ADLLEALGVDLEAPPERVGEAIEE--LGFGFLF 149 (329)
T ss_dssp EEEECCCCSSCCCCCHHH-HHHHHHHTTCEEEEEECCCTTTTCSH--HHHHHHTTCCTTCCHHHHHHHHHH--HSEEEEE
T ss_pred EEcCCCCCCCCccccHHH-HHHHHHhCCCCEEEeCCCCCCCcccH--HHHHHhCCCCCCCCHHHHHHHHHH--CCEEEEE
Confidence 999999999999999999 99999999999999999999999999 999999999999999999999999 5666677
Q ss_pred chhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCccccc
Q 007779 377 LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMT 456 (590)
Q Consensus 377 a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~~els 456 (590)
+|.|||+|++++++|++||+||+++.... ++||+++++||+||||+.|.++++++++.+| ++++|||| ||+||++
T Consensus 150 a~~~hPa~k~~~~~R~~lg~rTvfn~lgp---L~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lG-~~alVv~G-~G~dE~~ 224 (329)
T 2elc_A 150 ARVFHPAMRHVAPVRAELGVRTVFNLLGP---LTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHG-EGADELV 224 (329)
T ss_dssp HHHHCGGGGGTHHHHHHHCSCCHHHHHTT---TCCTTCCCEEEEECSSGGGHHHHHHHHHHTT-CEEEEEEE-TTBSSCC
T ss_pred hHHhCHHHHHHHHHHHHhCCCCHHHHHHH---hcCccCCceeEEeeeCHHHHHHHHHHHHHcC-CCEEEEeC-CChhhhc
Confidence 99999999999999999999996666443 2567777899999999999999999999999 99999999 9999987
Q ss_pred cccccccccCCCCccccccccccCcceeEec-CCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHCCCC-
Q 007779 457 TRLRSVNASKGLPVNYCSGFRSLNVESTFEG-DGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGEK- 533 (590)
Q Consensus 457 ~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~~-~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~G~~- 533 (590)
.. +|.|++. +|+ |+++|++||++..+++++ ++++++|+++++++|+|+.
T Consensus 225 -~~---------------------~t~v~~~~~g~------~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~ 276 (329)
T 2elc_A 225 -LG---------------------ENRVVEVGKGA------YALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEK 276 (329)
T ss_dssp -SS---------------------CEEEEETTTEE------EEECGGGGTCCCCCGGGGCCCSHHHHHHHHHHHHTTCCC
T ss_pred -cC---------------------CeEEEEEECCE------EEECHHHcCCccCCcccCCCCCHHHHHHHHHHHHCCCCC
Confidence 53 3566654 442 789999999998887764 6899999999999999986
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Q 007779 534 GPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISH 587 (590)
Q Consensus 534 ~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~ 587 (590)
++.+|.|++|||++||+.| +++|+++|+++|+++|+||+|+++|++|+++++
T Consensus 277 ~~~~d~v~~naa~~L~~~g--~~~~~~~g~~~A~~~i~sG~A~~~l~~~~~~~~ 328 (329)
T 2elc_A 277 GPLADAVALAAGAGFYAAG--KTPSLKEGVALAREVLASGEAYLLLERYVAFLR 328 (329)
T ss_dssp SHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 8899999999999999986 789999999999999999999999999999886
No 6
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=100.00 E-value=1.7e-76 Score=623.81 Aligned_cols=330 Identities=18% Similarity=0.220 Sum_probs=302.4
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~ 292 (590)
|+++++|+++.+|++||+||++++|+.|| +|+++|+|+||||||+|+||||+|||+||++||++++.+++++
T Consensus 1 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~- 72 (345)
T 1o17_A 1 MNINEILKKLINKSDLEINEAEELAKAII-------RGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVP- 72 (345)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCT-
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC-
Confidence 56889999999999999999999999999 9999999999999999999999999999999999999887664
Q ss_pred CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCce
Q 007779 293 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 372 (590)
Q Consensus 293 ~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf 372 (590)
+.||+|||||||.+|||+||+ +|+|+|++ +||+|||||++||++|| +|+||+||+++++++++++++|++ .||
T Consensus 73 -~~vD~~gTGGdg~~tfNiSt~-~A~v~Aa~-v~VaKHGnR~~ss~~Gs--aDvLEaLGv~~~~~~e~~~~~l~~--~gi 145 (345)
T 1o17_A 73 -NAIDTAGTGGDGLGTVNVSTA-SAILLSLV-NPVAKHGNRAVSGKSGS--ADVLEALGYNIIVPPERAKELVNK--TNF 145 (345)
T ss_dssp -TCEECCC----CCCBCCHHHH-HHHHHTTT-SCEEEEECCCSSSSCSH--HHHHHHHTBCCCCCHHHHHHHHHH--HSE
T ss_pred -CceeeCCCCCCCCCccchHHH-HHHHHHHc-CCEEEECCCCCCCcccH--HHHHHhCCCCCCCCHHHHHHHHHH--cCE
Confidence 589999999999999999999 99999999 99999999999999999 999999999999999999999999 566
Q ss_pred EeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEEecCCCc
Q 007779 373 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 452 (590)
Q Consensus 373 ~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G~eG~ 452 (590)
+|+++|.|||+|++++++|++||+||++|....+ +||+++++||+||||+.|.++++++++.+|.++++||||.+|+
T Consensus 146 ~fl~a~~~hPa~k~l~~~R~~lg~rTvfN~lgpL---~nPa~~~~ql~Gv~~~~~~~~~A~~l~~lG~~~alVv~G~~G~ 222 (345)
T 1o17_A 146 VFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPL---TNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGI 222 (345)
T ss_dssp EEEEHHHHCGGGGGTHHHHHHHCSCCGGGGCGGG---CCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEETTTB
T ss_pred EEEehHHhChHHHHHHHHHHHhCCCCHHHHHHHh---cCccCCCeEEEEeeCHHHHHHHHHHHHHcCCCeEEEEECCCCH
Confidence 6677999999999999999999999988885543 7888889999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCcc-CCCHHHHHHHHHHHHC
Q 007779 453 LSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALR 530 (590)
Q Consensus 453 ~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~vL~ 530 (590)
||+++.. +|.+++ .+|.+++ ++|+|+|||+++.+++++ ++++++|+++++++|+
T Consensus 223 dE~s~~~---------------------~t~v~~~~~g~~~~---~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~ 278 (345)
T 1o17_A 223 DEVSPIG---------------------NTFMKIVSKRGIEE---VKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFL 278 (345)
T ss_dssp SSCCSSS---------------------EEEEEEEETTEEEE---EEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHH
T ss_pred HHhcccC---------------------CcEEEEEeCCeEEE---EEEChhhcCCCCCChhccCCCCHHHHHHHHHHHHC
Confidence 9998653 356654 4776654 999999999999888874 6899999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 531 GEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 531 G~~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
|+.++.+|.|++|||++||+.| +++|+++|+++|+++|+ +|+++|++|+++|+.
T Consensus 279 G~~~~~~d~v~~naa~~L~~~g--~~~~~~eg~~~A~~~i~--~A~~~l~~~~~~~~~ 332 (345)
T 1o17_A 279 GKDEHVAEFIKINTAVALFALD--RVGDFREGYEYADHLIE--KSLDKLNEIISMNGD 332 (345)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHT--THHHHHHHHHHHSBC
T ss_pred CCCchHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhCC
Confidence 9878899999999999999986 78999999999999999 999999999999875
No 7
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=100.00 E-value=3e-58 Score=494.90 Aligned_cols=297 Identities=19% Similarity=0.177 Sum_probs=264.3
Q ss_pred hhHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCC
Q 007779 212 EMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA 291 (590)
Q Consensus 212 ~m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~ 291 (590)
.|+++++|+++.+|++||++|++++|+.|| +|+++|+|+||||||+|+||||+|||+||++||+++..+++++
T Consensus 3 ~m~~~~~I~kl~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~ 75 (436)
T 3h5q_A 3 AMRMIDIIEKKRDGHTLTTEEINFFIGGYV-------KGDIPDYQASSLAMAIYFQDMNDDERVALTMAMVNSGDMIDLS 75 (436)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCT
T ss_pred CCCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCcc
Confidence 478999999999999999999999999999 9999999999999999999999999999999999999888765
Q ss_pred C--CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhc-CCCCCCCHHHHHHHHHhc
Q 007779 292 D--VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDE 368 (590)
Q Consensus 292 ~--~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaL-Gi~i~~s~e~a~~~Le~~ 368 (590)
. .+.+|+|||||||.+| ||+ +|+|+|++|+||+|||||++||++|| +|+||+| |+++++++++++++|++
T Consensus 76 ~~~~~~vD~~gTGGdG~~t---St~-~A~vvAa~Gv~VaKHGnRa~ss~~Gs--aDvLEaLpGi~~~ls~e~~~~~l~~- 148 (436)
T 3h5q_A 76 DIKGVKVDKHSTGGVGDTT---TLV-LAPLVAAVDVPVAKMSGRGLGHTGGT--IDKLEAIDGFHVEIDEATFVKLVNE- 148 (436)
T ss_dssp TSCSCCEEEEECCCTTCCH---HHH-HHHHHHHTTCCEEEECCCCSSSSCCH--HHHHTTSTTCCCCCCHHHHHHHHHH-
T ss_pred ccCCCceeecCCCCCCCCh---HHH-HHHHHHhCCCCEEeECCCCCCCcccH--HHHHHhCcCCCCCCCHHHHHHHHHH-
Confidence 3 3589999999999986 776 99999999999999999999999999 9999999 99999999999999999
Q ss_pred cCceEeec-chhhChHhHHHHhhhcccCCCCCCCcchhhhhhhh--------ccCCceEEEEec--------CCcchHHH
Q 007779 369 EIGFAYVS-LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVR--------AQGREAIVAGFY--------HEGYEEPL 431 (590)
Q Consensus 369 g~gf~fl~-a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~ln--------P~~~~~~v~GV~--------h~~~~~~~ 431 (590)
.||+|++ +|.|||+|++++++|++ +||-.+.| ++| |++++++|+||| +++..+.+
T Consensus 149 -~g~~fl~~a~~~~Pa~~~l~~lR~~--~~TvfniP-----LinaSimSKKlpag~~~~vlgV~~G~gaf~~~~~~a~~l 220 (436)
T 3h5q_A 149 -NKVAVVGQSGNLTPADKKLYALRDV--TGTVNSIP-----LIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEAL 220 (436)
T ss_dssp -HSEEEECCCSSSCHHHHHHHHHHHT--TTCSSCHH-----HHHHHHHHHHHHTTCSEEEEEEEESTTSSBCSHHHHHHH
T ss_pred -cCCEEEccccccCHHHHHHHHHHhc--cCCcCChh-----hhccchhccccccCCCeEEEeeecCccccCCCHHHHHHH
Confidence 5677776 69999999999999999 67855432 478 889999999999 99999999
Q ss_pred HHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCC
Q 007779 432 LMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTN 510 (590)
Q Consensus 432 a~~l~~lG~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~ 510 (590)
+++|..+|.++ | +|.+++ .+|. +| ||+.
T Consensus 221 A~~l~~lG~~~-----G--------------------------------~~~v~~lt~~~---------~P--lG~~--- 249 (436)
T 3h5q_A 221 AHAMVRIGNNV-----G--------------------------------RNTMAIISDMN---------QP--LGRA--- 249 (436)
T ss_dssp HHHHHHHHHHH-----T--------------------------------CCEEEEEEECS---------SC--SSSE---
T ss_pred HHHHHHhhhhc-----C--------------------------------CeEEEEEcCCC---------CC--CCCC---
Confidence 99999998643 2 122222 2331 35 7764
Q ss_pred CCccCCCHHHHHHHHHHHHCCC-CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 511 TPRADRSVSKNIELGLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 511 ~~~~~~~~~~na~~~~~vL~G~-~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
++++.||++ ++++|+|+ +++.+|.|++|||++||+.| .++++++|+++|+++|+||+|+++|++|+++|+.
T Consensus 250 ----~G~~~E~ae-~~~vL~G~~~~~~~d~vl~nAa~~L~~ag--~a~~~~eg~~~A~~~i~sG~A~~~l~~~v~~qGg 321 (436)
T 3h5q_A 250 ----IGNALELQE-AIDTLKGQGPKDLTELVLTLGSQMVVLAN--KAETLEEARALLIEAINSGAALEKFKTFIKNQGG 321 (436)
T ss_dssp ----EESHHHHHH-HHHHHTTCSCHHHHHHHHHHHHHHHHHTT--SCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTC
T ss_pred ----CCCHHHHHH-HHHHHCCCCCccHHHHHHHHHHHHHHhcC--CcCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCC
Confidence 468999999 99999998 66799999999999999986 7889999999999999999999999999999874
No 8
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=100.00 E-value=2.1e-57 Score=489.30 Aligned_cols=293 Identities=17% Similarity=0.197 Sum_probs=253.4
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~ 292 (590)
|+++++|+++..|++||+||++++|+.|| +|+++|+|+||||||+|+||||.|||+||++||++++.++++++
T Consensus 1 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfL~Alr~kGet~eEiag~a~AM~~~~~~v~~~~ 73 (433)
T 1brw_A 1 MRMVDLIAKKRDGKALTKEEIEWIVRGYT-------NGDIPDYQMSALAMAIYFRGMTEEETAALTMAMVQSGEMLDLSS 73 (433)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCCTT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCccc
Confidence 56889999999999999999999999999 99999999999999999999999999999999999998887754
Q ss_pred --CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhc-CCCCCCCHHHHHHHHHhcc
Q 007779 293 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 369 (590)
Q Consensus 293 --~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaL-Gi~i~~s~e~a~~~Le~~g 369 (590)
.+.+|+|||||||.+ +||+ +|+++|++|+||+|||||++||++|| +|+||+| |+++++++++++++|++
T Consensus 74 ~~~~~vD~~gTGGdG~~---iSt~-~A~vvAa~Gv~VaKHGnRa~ss~~Gs--aDvLEaL~Gv~i~ls~e~~~~~l~~-- 145 (433)
T 1brw_A 74 IRGVKVDKHSTGGVGDT---TTLV-LGPLVASVGVPVAKMSGRGLGHTGGT--IDKLESVPGFHVEISKDEFIRLVNE-- 145 (433)
T ss_dssp SCSCCEEEEECCCSSCC---HHHH-HHHHHHTTTCCEEEEECCCBTTBCCH--HHHHTTSTTCCCCCCHHHHHHHHHH--
T ss_pred ccCCceeeCCCCCCCcc---hHHH-HHHHHHhCCCcEEEECCCCCCCCCCH--HHHHHHCcCceecCCHHHHHHHHHH--
Confidence 258999999999986 7887 99999999999999999999999998 8999999 99999999999999999
Q ss_pred CceEeecc-hhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhc--------cCCceEEEEe------c------CCcch
Q 007779 370 IGFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--------QGREAIVAGF------Y------HEGYE 428 (590)
Q Consensus 370 ~gf~fl~a-~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP--------~~~~~~v~GV------~------h~~~~ 428 (590)
.||+|+++ +.|||+|++++++|++| ||.++.| ++|| .+++++|+|| | ++.+.
T Consensus 146 ~Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNiP-----Lin~s~lskklA~G~~~~VlgVk~G~gaf~~~~de~~~l~ 218 (433)
T 1brw_A 146 NGIAIIGQTGDLTPADKKLYALRDVT--ATVNSIP-----LIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEARRLA 218 (433)
T ss_dssp HSEEEEECCTTSCHHHHHHHHHHHHH--TCCCCHH-----HHHHHHHHHHHHHCCSEEEEEEEESTTSSCCSHHHHHHHH
T ss_pred cCeeEecCchhhCHHHHHHHHHHHhh--CCccChh-----hcCcHhhHHHHhcCCCEEEEEeecccccccCCHHHHHHHH
Confidence 56666778 59999999999999999 8866653 3566 5667778877 6 56666
Q ss_pred HHHHHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEecCCcEEeeeeEEEecCCCCCCC
Q 007779 429 EPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEP 508 (590)
Q Consensus 429 ~~~a~~l~~lG~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~~~g~~~~~~~~~i~P~d~Gl~~ 508 (590)
+.+.++++.+|.++.+++++. + +++|+
T Consensus 219 ~~~v~~~~~~G~~~~~~i~~~---~------------------------------------------------~plg~-- 245 (433)
T 1brw_A 219 RVMVDIGKRVGRRTMAVISDM---S------------------------------------------------QPLGY-- 245 (433)
T ss_dssp HHHHHHHHHTTCEEEEEEEEC---S------------------------------------------------SCSSS--
T ss_pred HHHHHHHHHcCCEEEEEEcCC---C------------------------------------------------Ccccc--
Confidence 667777766776666666641 0 01221
Q ss_pred CCCCccCCCHHHHHHHHHHHHCCCC-CchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Q 007779 509 TNTPRADRSVSKNIELGLAALRGEK-GPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISH 587 (590)
Q Consensus 509 ~~~~~~~~~~~~na~~~~~vL~G~~-~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~ 587 (590)
.++++.+|++. +++|+|+. .+.+|.|++|||++||+.| ++.++++|+++|+++|+||+|+++|++|+++|+
T Consensus 246 -----~~G~a~E~a~~-~~vL~G~g~~~~~d~vl~nAa~~L~~~g--~a~~~~eg~~~A~~~i~sG~A~~kl~~~i~~~~ 317 (433)
T 1brw_A 246 -----AVGNALEVKEA-IETLKGNGPHDLTELCLTLGSHMVYLAE--KAPSLDEARRLLEEAIRSGAAIAAFKTFLAAQG 317 (433)
T ss_dssp -----EESSHHHHHHH-HHHHTTCSCHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred -----cCCCHHHHHHH-HHHHCCCCChhHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhC
Confidence 24689999965 89999983 2479999999999999986 789999999999999999999999999999987
Q ss_pred c
Q 007779 588 K 588 (590)
Q Consensus 588 ~ 588 (590)
.
T Consensus 318 g 318 (433)
T 1brw_A 318 G 318 (433)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=100.00 E-value=5.5e-57 Score=489.55 Aligned_cols=291 Identities=17% Similarity=0.170 Sum_probs=256.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCCC-
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADV- 293 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~~- 293 (590)
++++|+++..|++||+||++++|+.|| +|+++|+|+||||||+|+||||.|||+||++||++++.+++++..
T Consensus 30 ~~~iI~k~~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfLmAlr~kGeT~eEiag~a~AMr~~~~~v~~~~~~ 102 (474)
T 1uou_A 30 LPELIRMKRDGGRLSEADIRGFVAAVV-------NGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAW 102 (474)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHH-------HTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCCGGG
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCccccc
Confidence 789999999999999999999999999 999999999999999999999999999999999999988877542
Q ss_pred --CCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhc-CCCCCCCHHHHHHHHHhccC
Q 007779 294 --KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEEI 370 (590)
Q Consensus 294 --~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaL-Gi~i~~s~e~a~~~Le~~g~ 370 (590)
+.||+|||||||.+ +||+ +|+|+|++|++|+|||||++||++|| +|+||+| |+++++++++++++|++ .
T Consensus 103 ~~~~vD~~gTGGdG~~---iSt~-~A~vvAa~Gv~VaKHGnRa~ss~~GS--aDvLEaLpGv~i~ls~e~~~~~l~~--~ 174 (474)
T 1uou_A 103 RQQLVDKHSTGGVGDK---VSLV-LAPALAACGCKVPMISGRGLGHTGGT--LDKLESIPGFNVIQSPEQMQVLLDQ--A 174 (474)
T ss_dssp GGGBEEEEESCCTTCC---HHHH-HHHHHHTTTCBEEEECCCCBTTBCCH--HHHHTTSTTCCCCCCHHHHHHHHHH--H
T ss_pred CCCeeEeCCCCCCCce---eHHH-HHHHHHhCCCCEEEECCCCCCCCCCH--HHHHHhCCCCCCCCCHHHHHHHHHH--c
Confidence 48999999999987 8887 99999999999999999999999999 9999999 99999999999999999 5
Q ss_pred ceEeecc-hhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhc--------cCCceEEEEe------c------CCcchH
Q 007779 371 GFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--------QGREAIVAGF------Y------HEGYEE 429 (590)
Q Consensus 371 gf~fl~a-~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP--------~~~~~~v~GV------~------h~~~~~ 429 (590)
||+|+++ +.|||+|++++++|+++ ||.++.| ++|| .+.+++|+|| | ++.+.+
T Consensus 175 Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNiP-----Linpsi~skklA~g~~~~VlgVk~G~gafm~~lde~~~la~ 247 (474)
T 1uou_A 175 GCCIVGQSEQLVPADGILYAARDVT--ATVDSLP-----LITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAK 247 (474)
T ss_dssp SEEEECCCSSSSHHHHHHHHHHHHT--TCSSCHH-----HHHHHHHHHHHHTTCSEEEEEEEEC--CCCCSHHHHHHHHH
T ss_pred CeEEecCchhhCHHHHHHHHHHhhh--CCccchh-----hcCcHHHHHHHhhcCCeEEEEeccccccccCCHHHHHHHHH
Confidence 6666778 69999999999999995 8866653 3566 5678888888 6 667777
Q ss_pred HHHHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEecCCcEEeeeeEEEecCCCCCCCC
Q 007779 430 PLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPT 509 (590)
Q Consensus 430 ~~a~~l~~lG~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~~~g~~~~~~~~~i~P~d~Gl~~~ 509 (590)
.+.++++.+|.++.+++++.+ . .+|.
T Consensus 248 ~~v~~~~~~G~~~~~vitd~~---~------------------------------------------------plg~--- 273 (474)
T 1uou_A 248 TLVGVGASLGLRVAAALTAMD---K------------------------------------------------PLGR--- 273 (474)
T ss_dssp HHHHHHHHTTCCEEEEEEECS---S------------------------------------------------CSTT---
T ss_pred HHHHHHHHCCCEEEEEEecCC---C------------------------------------------------cccc---
Confidence 788888888888888887521 0 0111
Q ss_pred CCCccCCCHHHHHHHHHHHHCCCC-CchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 510 NTPRADRSVSKNIELGLAALRGEK-GPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 510 ~~~~~~~~~~~na~~~~~vL~G~~-~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
.++++.+|++.+ ++|+|+. .+.+|.|++|||++||+.| ++.++++|+++|+++|+||+|+++|++|+++|+.
T Consensus 274 ----~~G~a~E~ae~~-~vL~G~g~~~~~d~vl~nAa~~L~~aG--~a~~~~eg~~~A~e~i~sG~A~~kl~~li~~~~g 346 (474)
T 1uou_A 274 ----CVGHALEVEEAL-LCMDGAGPPDLRDLVTTLGGALLWLSG--HAGTQAQGAARVAAALDDGSALGRFERMLAAQGV 346 (474)
T ss_dssp ----EESSHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHHHT--SCSSHHHHHHHHHHHHHSSHHHHHHHHHHHHTTC
T ss_pred ----cCCCHHHHHHHH-HHHCCCCchhHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCC
Confidence 146899999755 9999983 5679999999999999986 7899999999999999999999999999999864
No 10
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=100.00 E-value=2.6e-57 Score=489.56 Aligned_cols=304 Identities=15% Similarity=0.113 Sum_probs=250.4
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~ 292 (590)
|+++++|+++.+|++||++|++++|+.|| +|+++|+|+||||||+|+||||.|||+||++||++++.+++++.
T Consensus 2 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~~ 74 (440)
T 2tpt_A 2 FLAQEIIRKKRDGHALSDEEIRFFINGIR-------DNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKS 74 (440)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSBCCCCTT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcc
Confidence 56889999999999999999999999999 99999999999999999999999999999999999998887754
Q ss_pred --C--CCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhc-CCCCCCCHHHHHHHHHh
Q 007779 293 --V--KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLED 367 (590)
Q Consensus 293 --~--~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaL-Gi~i~~s~e~a~~~Le~ 367 (590)
. +.||+|||||||.+ +||+ +|+++|++|+||+|||||++||++|| +|+||+| |+++++++++++++|++
T Consensus 75 ~~~~~~~vD~~gTGGdG~~---iSt~-~A~vvAa~Gv~VaKHGnR~~ss~~Gs--aDvLEaL~Gv~~~ls~e~~~~~l~~ 148 (440)
T 2tpt_A 75 LHLNGPIVDKHSTGGVGDV---TSLM-LGPMVAACGGYIPMISGRGLGHTGGT--LDKLESIPGFDIFPDDNRFREIIKD 148 (440)
T ss_dssp TTCSSCBEEEEECCCSSCC---HHHH-HHHHHHHTTCBEEEEECCCCTTSCCH--HHHHTTSTTCCSCCCHHHHHHHHHH
T ss_pred cccCCCeeeeCCCCCCCcc---HHHH-HHHHHHhCCCcEEEECCCCCCCcccH--HHHHHhCcCCCCCCCHHHHHHHHHH
Confidence 2 58999999999987 7887 99999999999999999999999999 9999999 99999999999999999
Q ss_pred ccCceEeecc-hhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhccCCceEEEEecCCcchHHHHHHHHHcCCceEEEE
Q 007779 368 EEIGFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVV 446 (590)
Q Consensus 368 ~g~gf~fl~a-~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV 446 (590)
.||+|+++ |.|||+|++++++|++| ||.++.| ++|| +.+.+++|. |.+ ++|+
T Consensus 149 --~G~~fl~a~~~~hPA~k~l~~lR~~l--rTvfNiP-----Lin~------------s~lskk~A~-----G~~-alVv 201 (440)
T 2tpt_A 149 --VGVAIIGQTSSLAPADKRFYATRDIT--ATVDSIP-----LITA------------SILAKKLAE-----GLD-ALVM 201 (440)
T ss_dssp --TSEEEEECCTTBSHHHHHHHHHHHHT--TCCCCHH-----HHHH------------HHHHHHHTT-----CCS-EEEE
T ss_pred --cCEEEEcCchhhCHHHHHHHHHHHhh--CCccChh-----hcCC------------HHHHHHHhc-----CCC-eEEE
Confidence 66777778 79999999999999999 8977763 2454 234444443 765 7776
Q ss_pred ---ecC----CCccccccccccccccCCCCccccccccccCcceeEe--cCCcEEeeeeEEEecCCCCCCCCCCCccCCC
Q 007779 447 ---KGE----EGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE--GDGVSRQSFNLEVNASNYGFEPTNTPRADRS 517 (590)
Q Consensus 447 ---~G~----eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~--~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~ 517 (590)
||. +|++|++...+ +.+++ .-|..+ ...++ +. . .++...+++
T Consensus 202 dVk~G~gaf~~~~de~~~la~---------------------t~v~~~~~~G~~~---~a~it--d~-~--~plg~~~G~ 252 (440)
T 2tpt_A 202 DVKVGSGAFMPTYELSEALAE---------------------AIVGVANGAGVRT---TALLT--DM-N--QVLASSAGN 252 (440)
T ss_dssp EEEESTTSSSSSHHHHHHHHH---------------------HHHHHHHHTTCEE---EEEEE--EC-S--SCSSSCEES
T ss_pred EeccCCccccCCHHHHHHHHH---------------------HHHHHHHHcCCce---EEEec--CC-C--CchhhcCCC
Confidence 775 35566553321 11111 111111 02222 11 1 334444579
Q ss_pred HHHHHHHHHHHHCCCCC--chhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 518 VSKNIELGLAALRGEKG--PTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 518 ~~~na~~~~~vL~G~~~--~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
+.+|++. +++|+|+.. +.+|.|++|||++||+.| ++.++++|+++|+++|+||+|+++|++|+++|+.
T Consensus 253 a~E~ae~-~~vL~G~g~~~~~~d~vl~nAa~~L~~ag--~a~~~~eg~~~A~~~i~sG~A~~kl~~~v~~~~g 322 (440)
T 2tpt_A 253 AVEVREA-VQFLTGEYRNPRLFDVTMALCVEMLISGK--LAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKG 322 (440)
T ss_dssp HHHHHHH-HHHHHTSCCCHHHHHHHHHHHHHHHHHTT--SCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHHCCCCCchHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCC
Confidence 9999987 999999832 379999999999999986 7899999999999999999999999999999864
No 11
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=6e-56 Score=475.53 Aligned_cols=294 Identities=19% Similarity=0.165 Sum_probs=250.2
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCC
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 292 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~ 292 (590)
|+++++|+++..|++||+||++++|+.|| +|++||+|+||||||+|+||||.|||+||++||++++.+++++.
T Consensus 1 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~G~~~d~QiaAfL~Al~~kGet~eEiag~a~aM~~~~~~l~~~~ 73 (423)
T 2dsj_A 1 MNPVAFIREKREGKKHRREDLEAFLLGYL-------RDEVPDYQVSAWLMAAFLRGLDPEETLWLTETMARSGKVLDLSG 73 (423)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSBCCCCTT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCccc
Confidence 56789999999999999999999999999 99999999999999999999999999999999999998887753
Q ss_pred C-CCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHHhc-CCCCCCCHHHHHHHHHhccC
Q 007779 293 V-KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEEI 370 (590)
Q Consensus 293 ~-~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaL-Gi~i~~s~e~a~~~Le~~g~ 370 (590)
. ..+|+|||||||. |+||+ +|+|+|+||+||+|||||++||++|| +|+||+| |+++++++++++++|++ .
T Consensus 74 ~~~~vD~~gTGGdG~---niSt~-~a~vvAa~Gv~VaKhGnR~~ss~~Gs--aDvLEaL~Gv~i~l~~e~~~~~l~~--~ 145 (423)
T 2dsj_A 74 LPHPVDKHSSGGVGD---KVSLV-VGPILAASGCTFAKMSGRGLAHTGGT--IDKLESVPGWRGEMTEAEFLERARR--V 145 (423)
T ss_dssp SSSBEEEEEESSSCC---STHHH-HHHHHHTTTCBEEEECCCCBTTBCCH--HHHHTTSTTCCCCCCHHHHHHHHHH--T
T ss_pred cCCceeEecCCCCCc---cHHHH-HHHHHHhCCCcEEEECCCCCCCCccH--HHHHHhCCCCCCCCCHHHHHHHHHH--c
Confidence 2 2799999999998 79998 99999999999999999999999999 9999999 99999999999999999 5
Q ss_pred ceEeecc-hhhChHhHHHHhhhcccC-CCCCCCcchhhhhhhh---ccCCceEEE------Eec--CCcchHHHHHHHHH
Q 007779 371 GFAYVSL-REARPSLYSLIGLREHIK-KRPPVATSEKVQQFVR---AQGREAIVA------GFY--HEGYEEPLLMLMKR 437 (590)
Q Consensus 371 gf~fl~a-~~~~Pal~~l~~vR~~Lg-~RtPL~np~k~~~~ln---P~~~~~~v~------GV~--h~~~~~~~a~~l~~ 437 (590)
||+|+++ +.|||+|++++++|++|| +||-.+-... .+| |+++++||+ |+| ++++.+.++++|..
T Consensus 146 Gi~f~~~~~~~~PA~k~l~~lR~~lgtv~Ti~nilgp---l~nkK~pag~~~~vldV~~G~Gaf~~~~~~~~~lA~~l~~ 222 (423)
T 2dsj_A 146 GLVIAAQSPDLAPLDGKLYALRDVTATVESVPLIASS---IMSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAKTMVA 222 (423)
T ss_dssp SEEEESCGGGBSHHHHHHHHHHHTTTCCCCHHHHHHH---HHHHHHHHTCSEEEEEEEESSSTTCBCHHHHHHHHHHHHH
T ss_pred CEEEEecccccChHHHHHHHHHHHhcccCcHHHhHHH---HhcCccCCCCCeEEEEeccCCCcccCCHHHHHHHHHHHHH
Confidence 5555556 899999999999999999 7982222211 256 788899999 679 88899999999999
Q ss_pred cCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCccCC
Q 007779 438 RGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRADR 516 (590)
Q Consensus 438 lG~~~alVV~G~eG~~els~~~~~~~~~~g~~~~~~~~~~~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~ 516 (590)
+|.+. | . +.+.+ .||. +.+|+ .++
T Consensus 223 lg~~~-----G---------~-----------------------~~v~~l~dg~-----------~plg~-------~~G 247 (423)
T 2dsj_A 223 IGQGA-----G---------R-----------------------RVRALLTSME-----------APLGR-------AVG 247 (423)
T ss_dssp HHHHT-----T---------C-----------------------EEEEEEEECS-----------SCSSS-------EEE
T ss_pred HHHHc-----C---------C-----------------------eEEEEEcCCC-----------Ccccc-------cCC
Confidence 88532 1 0 11111 1221 12333 247
Q ss_pred CHHHHHHHHHHHHCCC-CCchhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 007779 517 SVSKNIELGLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 588 (590)
Q Consensus 517 ~~~~na~~~~~vL~G~-~~~~~d~v~lNAa~~L~l~g~g~a~s~~eg~~~A~e~i~SG~A~~~L~~~~~~~~~ 588 (590)
++.+|++++ ++|+|+ +.+.+|.|++|||++||+.| . ++ ++|+++|+||+|+++|++|+++|+.
T Consensus 248 ~a~E~ae~i-~vL~G~g~~~~~d~vl~nAa~~L~~ag--~--~l----~~A~~~l~sG~A~~kl~~li~~~~g 311 (423)
T 2dsj_A 248 NAIEVREAI-EALKGEGPGDLLEVALALAEEALRLEG--L--DP----ALARKALEGGAALEKFRAFLEAQGG 311 (423)
T ss_dssp SHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHHTT--C--CT----HHHHHHHHTSHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHH-HHHCCCCchhHHHHHHHHHHHHHHHcC--C--CH----HHHHHHHhcCcHHHHHHHHHHHhCC
Confidence 999999988 499998 33479999999999999986 3 55 9999999999999999999999863
No 12
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.94 E-value=2.9e-27 Score=229.66 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=131.8
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|+++||.|| ++|+++|.++.++++++.+.++.. -..+|+|||+||||.|.+..+.+...++ ++
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----------~~~~dglil~gG~~~~~~~~~~~~~~~~-i~ 72 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIE----------RIDPDRLIISPGPGTPEKREDIGVSLDV-IK 72 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHH----------HHCCSEEEECCCSSCTTSHHHHTTHHHH-HH
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHh----------hCCCCEEEECCCCCChhhhhhhhHHHHH-HH
Confidence 889999998 789999999999999865443311 0146999999999999855456666788 88
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc-----CC----------ceeEEeccchhccccCCCcEEEEe
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS-----EG----------ERRAMNTFWPLLMRALPPDVIFIA 188 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s-----~~----------~~~~~~ryHsl~v~~~p~~l~v~a 188 (590)
.+..++|+|| |+|||.|+.++||+|.+. +.+.||++. ++ +.+.+.+||++.|+.+|++++++|
T Consensus 73 ~~~~~~PvLGIC~G~QlL~~~~gg~v~~~-~~~~~g~~~~v~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~l~~~~~vla 151 (195)
T 1qdl_B 73 YLGKRTPILGVCLGHQAIGYAFGAKIRRA-RKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDA 151 (195)
T ss_dssp HHTTTSCEEEETHHHHHHHHHTTCEEEEE-EEEEEEEEEEEEECCSSCCSTTTTCCSEEEEEEEEEEEEECCCTTEEEEE
T ss_pred HhcCCCcEEEEehHHHHHHHHhCCEEecc-CCCcCCCceEEEECCCCHhHHHhcCCCceEEeccccchhhhCCCCcEEEE
Confidence 7777899999 999999999999999998 778899764 12 268899999999999999999999
Q ss_pred -e-cCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHH
Q 007779 189 -D-PEGSIMGGGGS----IGPHYSGND---PREMR-LVGALR 220 (590)
Q Consensus 189 -~-~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~ 220 (590)
+ ++|.++|++|+ ||||||||. +.+.+ +++|++
T Consensus 152 ~s~~~g~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 152 ISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp EESSSCCEEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHHH
T ss_pred EECCCCcEEEEEeCCCCEEEEecCCCCCCCccHHHHHHHHHh
Confidence 7 78999999996 999999997 44666 778876
No 13
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.94 E-value=6.1e-27 Score=226.72 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=124.7
Q ss_pred eeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 50 RLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 50 ~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
+|.++||+|| ++|+++|.++.+++++. +.++..+.+.. . ..+++|||||||+|. +.+...++ +
T Consensus 2 ~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~-~~~~i~~~l~~-----~-~~~~iil~gGpg~~~---~~~~~~~l-~ 70 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHNVVIYRNHI-PAQTLIDRLAT-----M-KNPVLMLSPGPGVPS---EAGCMPEL-L 70 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTS-CSHHHHHHHTT-----C-SSEEEEECCCSSCGG---GSTTHHHH-H
T ss_pred cEEEEECCccHHHHHHHHHHHCCCeEEEEECCC-CHHHHHHHhhh-----c-cCCeEEECCCCcCch---hCchHHHH-H
Confidence 6899999998 67888899999999983 22221100000 1 134699999999998 66777777 8
Q ss_pred HHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccccCCCcEEEEeec
Q 007779 124 RSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIADP 190 (590)
Q Consensus 124 ~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a~~ 190 (590)
+.+..++|+|| |+|||.|+.++||++.+. +.+.||.+. . ++.+.+.+|||+.|..+|++++++|+.
T Consensus 71 ~~~~~~~PilGIC~G~Qll~~~~Gg~v~~~-~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~lp~~~~v~a~~ 149 (192)
T 1i1q_B 71 TRLRGKLPIIGICLGHQAIVEAYGGYVGQA-GEILHGKATSIEHDGQAMFAGLANPLPVARYHSLVGSNVPAGLTINAHF 149 (192)
T ss_dssp HHHBTTBCEEEETHHHHHHHHHTSCCCCC----CCSSEEEEEEECCCGGGTTSCSSEEEEECCC---CCCCTTCEEEEEE
T ss_pred HHHhcCCCEEEECcChHHHHHHhCCEEEeC-CCcEecceeEEecCCChHHhcCCCCcEEEechhhHhhhCCCccEEEECC
Confidence 88777899999 999999999999999988 678899764 1 236899999999999999999999966
Q ss_pred CCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhh
Q 007779 191 EGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVL 223 (590)
Q Consensus 191 ~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~ 223 (590)
|+.+||++|+ ||||||||+ +.|.+ +++|++.+.
T Consensus 150 ~~~~~ai~~~~~~~~gvQfHPE~~~~~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 150 NGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQ 190 (192)
T ss_dssp TTEEEEEEETTTTEEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCEEEEEccCcccCCcccHHHHHHHHHHHh
Confidence 7899999985 999999997 46776 888887653
No 14
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.92 E-value=3.4e-25 Score=250.41 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=131.2
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchh--hhhHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDE--AFKVLD 120 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~--~g~~~~ 120 (590)
.+|+++|+-|| ++++++|.++.|+++|.. .. ...+|+||||||||+|.+..+ ...+.+
T Consensus 447 k~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~-~~-------------~~~~DgIIlsGGPg~p~d~~~p~i~~~~~ 512 (645)
T 3r75_A 447 CRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA-VD-------------LARYDVVVMGPGPGDPSDAGDPRIARLYA 512 (645)
T ss_dssp CEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC-CC-------------GGGCSEEEECCCSSCTTCTTSHHHHHHHH
T ss_pred CEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc-cc-------------ccCCCEEEECCCCCChhhhhhhhHHHHHH
Confidence 47999999998 788999999999999862 10 335699999999999984322 113556
Q ss_pred HHHHH-hcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----CCceeEEeccchhcc--------ccCCCcEEE
Q 007779 121 TILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----EGERRAMNTFWPLLM--------RALPPDVIF 186 (590)
Q Consensus 121 ~~i~~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~~~~~~~~ryHsl~v--------~~~p~~l~v 186 (590)
+ |+. +..++|+|| |||||+|+.+|||+|.+. +.++||+++ .+.++....||++.| ..+|+++++
T Consensus 513 l-I~~a~~~~iPiLGIClG~QlLa~alGG~V~~~-~~~~~G~~~~i~~~~~~l~~~~~~~~~v~~~h~~~~~~lp~g~~v 590 (645)
T 3r75_A 513 W-LRHLIDEGKPFMAVCLSHQILNAILGIPLVRR-EVPNQGIQVEIDLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAI 590 (645)
T ss_dssp H-HHHHHHHTCCEEEETHHHHHHHHHTTCCEEEE-EEEEEEEEEEEEETTEEEEEEEEEEEEEBCSCSEEEETTTEEEEE
T ss_pred H-HHHHHHCCCCEEEECHHHHHHHHHhCCEEEcC-CCcccccceEEeeecCcceecCCCcEEEEEehhhccccCCCCeEE
Confidence 6 665 456899999 999999999999999999 899999876 355566666776666 358899999
Q ss_pred Ee-ecCCcEEEEEcC--CCCcccCCC---chhhH-HHHHHHHhhcC
Q 007779 187 IA-DPEGSIMGGGGS--IGPHYSGND---PREMR-LVGALREVLAG 225 (590)
Q Consensus 187 ~a-~~~g~im~~~h~--~gvQfHPEs---~~~m~-L~~~L~kl~~G 225 (590)
+| ++||.|||++|+ ||||||||+ +.|.. |+|||+.+...
T Consensus 591 ~A~s~dg~i~Ai~~~~~~GVQFHPE~~~t~~G~~Ll~nFl~~~~~~ 636 (645)
T 3r75_A 591 SRDPRTGEVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRR 636 (645)
T ss_dssp EECTTTCBEEEEEETTEEEESSBTTSTTCTTHHHHHHHHHHHHTTT
T ss_pred EEEcCCCcEEEEEcCCEEEEEeCCeecCCcchHHHHHHHHHHHHhc
Confidence 99 889999999999 999999998 56777 99999888654
No 15
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.91 E-value=1.4e-24 Score=231.02 Aligned_cols=159 Identities=8% Similarity=-0.007 Sum_probs=125.9
Q ss_pred cceeEeecccc-H---HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 48 RIRLTVKADLD-S---ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 48 ~~~~~~~~~~d-~---~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
+.+|.+.|.=- . .+|.+.|+.+.|++++. +.+++. ...+|+||||+|||+|. +....+++ +
T Consensus 190 ~~~V~viD~G~k~ni~r~L~~~G~~v~vvp~~~-~~e~i~----------~~~~DGliLsGGPgdp~---~~~~~~~~-I 254 (379)
T 1a9x_B 190 PFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQT-SAEDVL----------KMNPDGIFLSNGPGDPA---PCDYAITA-I 254 (379)
T ss_dssp CEEEEEEESSCCHHHHHHHHHTTEEEEEEETTC-CHHHHH----------TTCCSEEEECCCSBCST---TCHHHHHH-H
T ss_pred CCEEEEEECCChHHHHHHHHHCCCEEEEEeccC-CHHHHh----------hcCCCEEEEeCCCCChH---HHHHHHHH-H
Confidence 35788888621 1 45677799999999884 233211 11469999999999998 55567777 7
Q ss_pred HHhcC-CCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------CCceeEEeccchhccc--cCCCcEEEEe-e-cC
Q 007779 124 RSAKG-DLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------EGERRAMNTFWPLLMR--ALPPDVIFIA-D-PE 191 (590)
Q Consensus 124 ~~~~~-~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~~~~~~~~ryHsl~v~--~~p~~l~v~a-~-~~ 191 (590)
+.+.. ++|+|| |||||.|+.++||+|.++ ++++||.++ +++.+.+++||++.|+ ++|+++++++ + +|
T Consensus 255 r~~~~~~~PILGIClG~QLLa~A~GG~v~k~-~~gh~g~n~pv~~~~~g~v~its~~H~~aV~~~~Lp~~~~v~a~s~~D 333 (379)
T 1a9x_B 255 QKFLETDIPVFGICLGHQLLALASGAKTVKM-KFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFD 333 (379)
T ss_dssp HHHTTSCCCEEEETHHHHHHHHHTTCCEEEE-EEEEEEEEEEEEETTTTEEEEEEEEEEEEECSTTCCTTEEEEEEETTT
T ss_pred HHHHHcCCCEEEECchHHHHHHHhCcEEEec-ccccccCceeeEecCCCcEEEEecCccceEecccCCCCeEEEEEeCCC
Confidence 77655 699999 999999999999999999 899999775 3456777899999996 5999999999 5 78
Q ss_pred CcEEEEEcC----CCCcccCCCc----hhhH-HHHHHHHh
Q 007779 192 GSIMGGGGS----IGPHYSGNDP----REMR-LVGALREV 222 (590)
Q Consensus 192 g~im~~~h~----~gvQfHPEs~----~~m~-L~~~L~kl 222 (590)
|.|||++|+ ||||||||+. .+.. +.+|++.+
T Consensus 334 g~ieai~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl~~~ 373 (379)
T 1a9x_B 334 GTLQGIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELI 373 (379)
T ss_dssp CCEEEEEESSSSEEEESSCTTCSSSCSTTTHHHHHHHHHH
T ss_pred CcEEEEEECCCCEEEEEeCCcCCCCcccHHHHHHHHHHHH
Confidence 999999995 9999999982 2334 78888765
No 16
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.88 E-value=2.9e-23 Score=204.50 Aligned_cols=157 Identities=13% Similarity=0.063 Sum_probs=125.8
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCC-CCCCCCchhhhhHHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPT-QTRPLREDEAFKVLDT 121 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspG-Pg~P~~~~~~g~~~~~ 121 (590)
+++++.|+.|+ ++|+++|.++.+++++. +.++ ++.+|+|||++| |++|.+..+...+.+.
T Consensus 14 ~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~------------l~~~DglIl~GG~p~~~~~~~~~~~l~~~ 80 (212)
T 2a9v_A 14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-DSSE------------LDGLDGLVLSGGAPNIDEELDKLGSVGKY 80 (212)
T ss_dssp CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS-CGGG------------GTTCSEEEEEEECSCGGGTGGGHHHHHHH
T ss_pred ceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC-CHHH------------HhCCCEEEECCCCCCCCcccccchhHHHH
Confidence 47899999998 67888899999999875 2322 345799999999 9998754234444555
Q ss_pred HHHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccccCCCcEEEEe
Q 007779 122 ILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIA 188 (590)
Q Consensus 122 ~i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a 188 (590)
+. ..++|+|| |+|||.|+.++||+|.+. +.+++|... . ++.+.+..+|++.|+.+|++++++|
T Consensus 81 -~~--~~~~PiLGIC~G~Qll~~~lGg~v~~~-~~~~~G~~~v~~~~~~~l~~~~~~~~~v~~~H~~~v~~l~~~~~vlA 156 (212)
T 2a9v_A 81 -ID--DHNYPILGICVGAQFIALHFGASVVKA-KHPEFGKTKVSVMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAA 156 (212)
T ss_dssp -HH--HCCSCEEEETHHHHHHHHHTTCEEEEE-EEEEEEEEEEEESCCCGGGTTCCSEEEEEEEEEEEEESCCTTEEEEE
T ss_pred -HH--hCCCCEEEEChHHHHHHHHhCCEEEcC-CCcccCceeeEECCCChhHhcCCCceEEEeEhhhhHhhCCCCcEEEE
Confidence 32 35799999 999999999999999998 778888643 1 2367888999999999999999999
Q ss_pred -ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHh
Q 007779 189 -DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREV 222 (590)
Q Consensus 189 -~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl 222 (590)
++||.|+|++++ +|||||||. +.+.+ +++|++.+
T Consensus 157 ~s~d~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~ 199 (212)
T 2a9v_A 157 SSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGIC 199 (212)
T ss_dssp ECSSCSCSEEEESSSSEEEESSCTTSTTSTTHHHHHHHHHHHH
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 888999999985 999999997 34555 88888754
No 17
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.88 E-value=1e-22 Score=196.26 Aligned_cols=155 Identities=11% Similarity=0.035 Sum_probs=121.1
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|.++|+.|+ ++|++.|.++.++++++ +.++.. -+.+|+|||++|| +|. +.+...++ ++
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~----------~~~~dglil~Gg~-~~~---~~~~~~~~-i~ 66 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIK----------AMNPKGIIFSGGP-SLE---NTGNCEKV-LE 66 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHH----------HTCCSEEEECCCS-CTT---CCTTHHHH-HH
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhc----------ccCCCEEEECCCC-Chh---hhhhHHHH-HH
Confidence 788888885 67888899999999876 232211 1246999999999 887 56667788 77
Q ss_pred Hh-cCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccccCCCcEEEEe-e
Q 007779 125 SA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIA-D 189 (590)
Q Consensus 125 ~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a-~ 189 (590)
.+ ..++|+|| |+|||.|+.++||++.++ +.++||.+. + ++.+.+..+|...+.++|++++++| +
T Consensus 67 ~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~-~~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~h~~~v~~l~~~~~vla~s 145 (189)
T 1wl8_A 67 HYDEFNVPILGICLGHQLIAKFFGGKVGRG-EKAEYSLVEIEIIDEXEIFKGLPKRLKVWESHMDEVKELPPKFKILARS 145 (189)
T ss_dssp TGGGTCSCEEEETHHHHHHHHHHTCEEEEC-SCCSCEEEEEEESCC--CCTTSCSEEEEEECCSEEEEECCTTEEEEEEE
T ss_pred HHhhCCCeEEEEcHHHHHHHHHhCCceecC-CCcccCceeEEEecCchHHhCCCCceEEEEEeeeehhhCCCCcEEEEEc
Confidence 76 67899999 999999999999999998 788899754 1 1246664444445568999999999 8
Q ss_pred cCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHh
Q 007779 190 PEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREV 222 (590)
Q Consensus 190 ~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl 222 (590)
+||.++|++|+ +|||||||+ +.+.. +++|++..
T Consensus 146 ~~g~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~~~ 186 (189)
T 1wl8_A 146 ETCPIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFAKLC 186 (189)
T ss_dssp SSCSCSEEEESSSCEEEESSCTTSTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCceEEEEecCCCcCCCcchHHHHHHHHHHH
Confidence 88999999986 899999996 44555 88888654
No 18
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=192.86 Aligned_cols=160 Identities=6% Similarity=-0.045 Sum_probs=114.5
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
.+|.++|+-|+ ++++++|.++.+++.+.- .++.. .+.+|+|||++||+.|.+.+... ..+.
T Consensus 25 ~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~-~~~l~----------~~~~dglil~Gg~~~~~~~~~~~-~~~~- 91 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETP-AFAIK----------EQGFRAIIISGGPNSVYAEDAPW-FDPA- 91 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCC-HHHHH----------HHTCSEEEEEC---------CCC-CCGG-
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hHHHh----------hcCCCEEEECCCCcccccccchh-HHHH-
Confidence 36888888876 678888999999988742 22211 13479999999999886322222 2222
Q ss_pred HHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccccCCCcEEEEee
Q 007779 123 LRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIAD 189 (590)
Q Consensus 123 i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a~ 189 (590)
+ +..++|+|| |+|||+|+.++||+|.+. +.+++|... . ++.+.+..||++.|+.+|++++++|.
T Consensus 92 ~--~~~~~PilGIC~G~Qll~~~~GG~v~~~-~~~~~G~~~v~~~~~~~l~~~l~~~~~v~~~H~~~v~~l~~~~~vlA~ 168 (218)
T 2vpi_A 92 I--FTIGKPVLGICYGMQMMNKVFGGTVHKK-SVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVAR 168 (218)
T ss_dssp G--GTSSCCEEEETHHHHHHHHHTTCCEEEE-EECSCEEEEEEECTTSGGGTTCCSEEEEEECSEEEESSCCTTCEEEEE
T ss_pred H--HHcCCCEEEEcHHHHHHHHHhCCceEeC-CCCcccEEEEEEccCChhHhcCCCCcEEeehhhhHhhhcCCCCEEEEE
Confidence 1 234799999 999999999999999998 777888643 1 23688899999999999999999993
Q ss_pred cCCcEEEEEcC----CCCcccCCC---chhhH-HHHHH-HHhhc
Q 007779 190 PEGSIMGGGGS----IGPHYSGND---PREMR-LVGAL-REVLA 224 (590)
Q Consensus 190 ~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L-~kl~~ 224 (590)
.|+.|+|++|+ +|||||||. +.+.+ +++|+ +....
T Consensus 169 s~~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~~ 212 (218)
T 2vpi_A 169 SGNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGC 212 (218)
T ss_dssp ETTEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCC
T ss_pred cCCeEEEEEECCCCEEEEEcCCCCCCChhHHHHHHHHHHHHhCC
Confidence 37899999975 999999997 44666 88888 44433
No 19
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.84 E-value=3e-22 Score=195.91 Aligned_cols=151 Identities=17% Similarity=0.146 Sum_probs=103.8
Q ss_pred eeEeec----cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHH---
Q 007779 50 RLTVKA----DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLD--- 120 (590)
Q Consensus 50 ~~~~~~----~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~--- 120 (590)
+|.++| |+.| +.|+++|++++|+|+++ + ++..|+||| ||||.|. ++...++
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~----~------------l~~~D~lil-PG~g~~~---~~~~~~~~~~ 63 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQ----V------------VLAADKLFL-PGVGTAS---EAMKNLTERD 63 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHH----H------------HHHCSEEEE-CCCSCHH---HHHHHHHHTT
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHH----H------------HhCCCEEEE-CCCCCHH---HHHHHHHhcC
Confidence 578888 8888 88999999999987642 1 334589999 8999997 5543322
Q ss_pred HHHHH-hcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcc---------------------cc-----------C--C
Q 007779 121 TILRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQ---------------------WS-----------E--G 164 (590)
Q Consensus 121 ~~i~~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~---------------------~s-----------~--~ 164 (590)
+ ++. ...++|+|| |||||+|+.++|+.+.++ ....||. ++ . .
T Consensus 64 ~-i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~-~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 141 (211)
T 4gud_A 64 L-IELVKRVEKPLLGICLGMQLLGKLSEEKGQKA-DEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIE 141 (211)
T ss_dssp C-HHHHHHCCSCEEEETHHHHTTSSEECCC-----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCC
T ss_pred h-HHHHHHcCCCEEEEchhHhHHHHHhCCccccc-CCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCC
Confidence 2 222 235799999 999999999999999887 5655541 11 0 1
Q ss_pred ceeEEeccchhccccCCCcEEEEe-ecCCcEE--EEEcC--CCCcccCCC--chhhH-HHHHHHHhhcCCC
Q 007779 165 ERRAMNTFWPLLMRALPPDVIFIA-DPEGSIM--GGGGS--IGPHYSGND--PREMR-LVGALREVLAGGH 227 (590)
Q Consensus 165 ~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im--~~~h~--~gvQfHPEs--~~~m~-L~~~L~kl~~G~~ 227 (590)
..+.+.+|||+.| |++..++| +++|..+ ++++. ||||||||+ +.|++ |+|||+- .|++
T Consensus 142 ~~~~~~~~H~~~v---~~~~~~~a~~~~g~~~~~~v~~~~v~GvQFHPE~s~~~G~~ll~nFl~~--~ge~ 207 (211)
T 4gud_A 142 PDAYFYFVHSFAM---PVGDYTIAQCEYGQPFSAAIQAGNYYGVQFHPERSSKAGARLIQNFLEL--RGEN 207 (211)
T ss_dssp TTCCEEEEESEEC---CCCTTEEEEEESSSEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHC------
T ss_pred CCcEEEEEeeEEe---CCCCeEEEEecCCCeEEEEEeCCCEEEEEccCEecCccHHHHHHHHHHH--hccc
Confidence 2466788999876 45556777 7777644 45554 999999997 66777 9999963 4544
No 20
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.84 E-value=5.1e-21 Score=191.81 Aligned_cols=148 Identities=11% Similarity=0.013 Sum_probs=113.6
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh---hhHHHHHHHHh-cCCCCccc-
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA---FKVLDTILRSA-KGDLKDEE- 134 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~---g~~~~~~i~~~-~~~~PilG- 134 (590)
+++++.|.++.+++++.. +. ++. .++.+|+|||++||++|.+++.. ....++ |+.+ ..++|+||
T Consensus 31 ~~l~~~G~~v~v~~~~~~--~~----~~~----~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~-i~~~~~~~~PiLGI 99 (239)
T 1o1y_A 31 DIFREKNWSFDYLDTPKG--EK----LER----PLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQL-IEEILKKEIPFLGI 99 (239)
T ss_dssp HHHHHTTCEEEEECGGGT--CC----CSS----CGGGCSEEEECCCSCCTTCTTTCTHHHHHHHH-HHHHHHHTCCEEEE
T ss_pred HHHHhCCCcEEEeCCcCc--cc----ccc----chhcCCEEEECCCCccccCCccChhHHHHHHH-HHHHHHCCCCEEEE
Confidence 788899999999988642 11 111 15577999999999988643212 245666 6664 45799999
Q ss_pred ccchHHHHhHhCceeeccCCC-CcCcccc----C--------CceeEEeccchhccccCCCcEEEEe-ecCCcEEEEEcC
Q 007779 135 EVSKAQLGAFFSAMTIRANAF-PEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS 200 (590)
Q Consensus 135 CLGhQ~i~~~~G~~v~~~~~~-~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~ 200 (590)
|+|||.|+.++||+|.+. +. +++|... . ++.+.+.+||++.+ .+|++++++| ++|+.+||++++
T Consensus 100 C~G~QlL~~alGG~v~~~-~~g~~~G~~~v~~~~~~~l~~~~~~~~~~~~~H~~~v-~lp~~~~vlA~s~~~~iea~~~~ 177 (239)
T 1o1y_A 100 CLGSQMLAKVLGASVYRG-KNGEEIGWYFVEKVSDNKFFREFPDRLRVFQWHGDTF-DLPRRATRVFTSEKYENQGFVYG 177 (239)
T ss_dssp THHHHHHHHHTTCCEEEC-TTCCEEEEEEEEECCCCGGGTTSCSEEEEEEEESEEE-CCCTTCEEEEECSSCSCSEEEET
T ss_pred chhHHHHHHHcCCeEecC-CCCCccccEEEEECCCCchHHhCCCCceeEeecCCcc-ccCCCCEEEEEcCCCCEEEEEEC
Confidence 999999999999999998 66 6555331 1 23688999999998 7899999999 788899999998
Q ss_pred --CCCcccCCCchhhHHHHHHHH
Q 007779 201 --IGPHYSGNDPREMRLVGALRE 221 (590)
Q Consensus 201 --~gvQfHPEs~~~m~L~~~L~k 221 (590)
||||||||+... .+++|++.
T Consensus 178 ~i~gvQfHPE~~~~-~~~~~~~~ 199 (239)
T 1o1y_A 178 KAVGLQFHIEVGAR-TMKRWIEA 199 (239)
T ss_dssp TEEEESSBSSCCHH-HHHHHHHH
T ss_pred CEEEEEeCccCCHH-HHHHHHHH
Confidence 999999999554 36666643
No 21
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.84 E-value=4.5e-21 Score=213.90 Aligned_cols=170 Identities=4% Similarity=-0.090 Sum_probs=129.7
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
.+|+++|+=++ ..++++|..+.+++++ .+.+++. . ..+|+||||+||++|.+++......++
T Consensus 8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~-~~~~~i~----~------~~~dgIIlsGGp~s~~~~~~~~~~~~l- 75 (556)
T 3uow_A 8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG-VELKDIK----D------MNIKGVILSGGPYSVTEAGSPHLKKEV- 75 (556)
T ss_dssp CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT-CCGGGTT----T------SCEEEEEECCCSCCTTSTTCCCCCHHH-
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHh----h------cCCCEEEECCCCCcccccCCcchhHHH-
Confidence 37899998776 6788999999999987 3344321 1 156899999999999754333333444
Q ss_pred HHHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc------C-------------------------------
Q 007779 123 LRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS------E------------------------------- 163 (590)
Q Consensus 123 i~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s------~------------------------------- 163 (590)
++.+ ..++|+|| |+|||.|+.+|||+|.+. +..+||... .
T Consensus 76 ~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~-~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~ 154 (556)
T 3uow_A 76 FEYFLEKKIPIFGICYGMQEIAVQMNGEVKKS-KTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETC 154 (556)
T ss_dssp HHHHHHTTCCEEEETHHHHHHHHHTTCEEEEE-EEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--C
T ss_pred HHHhhhcCCCEEEECHHHHHHHHHhCCcEecC-CCcccCCcceeeccCcccccccceecccccccccccccccccccccc
Confidence 6553 34799999 999999999999999987 555666432 1
Q ss_pred -------CceeEEeccchhccccCCCcEEEEe-ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhh-cCC
Q 007779 164 -------GERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVL-AGG 226 (590)
Q Consensus 164 -------~~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~-~G~ 226 (590)
++.+.++.+|++.|..+|++++++| ++++.|+|++|+ ||||||||. +.|.+ |++|+..+. ..+
T Consensus 155 ~Lf~gl~~~~~~v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl~~i~g~~~ 234 (556)
T 3uow_A 155 CLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKK 234 (556)
T ss_dssp GGGTTCCSSEEEEEEEEEEEEEECCTTCEEEEEETTEEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCC
T ss_pred hhhcccccCceEEEEEccceeeccCCCcEEEEEeCCCCEEEEEECCCCEEEEEcCCCCCccccchHHHHHHHHHhhcccc
Confidence 2368899999999999999999999 888999999994 999999998 56777 999996653 234
Q ss_pred CCCHH
Q 007779 227 HLGYE 231 (590)
Q Consensus 227 ~Lt~e 231 (590)
+.+.+
T Consensus 235 ~~~~~ 239 (556)
T 3uow_A 235 QFDPI 239 (556)
T ss_dssp -CCHH
T ss_pred ccccc
Confidence 66643
No 22
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.84 E-value=6.3e-21 Score=192.72 Aligned_cols=147 Identities=8% Similarity=-0.028 Sum_probs=114.2
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc-hhhhhHHHHHHHH-hcCCCCccc-cc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE-DEAFKVLDTILRS-AKGDLKDEE-EV 136 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~-~~~g~~~~~~i~~-~~~~~PilG-CL 136 (590)
+++++.|.+++|++.+.-+. .+. .++.+|+|||++||++|.+. .......++ |+. +..++|+|| |+
T Consensus 22 ~~l~~~G~~v~v~~~~~~~~------~p~----~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~-i~~~~~~~~PvlGIC~ 90 (250)
T 3m3p_A 22 DFLAGEHIPFQVLRMDRSDP------LPA----EIRDCSGLAMMGGPMSANDDLPWMPTLLAL-IRDAVAQRVPVIGHCL 90 (250)
T ss_dssp HHHHHTTCCEEEEEGGGTCC------CCS----CGGGSSEEEECCCSSCTTSCCTTHHHHHHH-HHHHHHHTCCEEEETH
T ss_pred HHHHHCCCeEEEEeccCCCc------CcC----ccccCCEEEECCCCCcccccchHHHHHHHH-HHHHHHcCCCEEEECH
Confidence 78999999999999764221 111 15567999999999998642 122345566 665 455799999 99
Q ss_pred chHHHHhHhCceeeccCCCCcCcccc-----C---------CceeEEeccchhccccCCCcEEEEe-ecCCcEEEEEcC-
Q 007779 137 SKAQLGAFFSAMTIRANAFPEATQWS-----E---------GERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS- 200 (590)
Q Consensus 137 GhQ~i~~~~G~~v~~~~~~~~hG~~s-----~---------~~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im~~~h~- 200 (590)
|+|.|+.++||+|.+. +.+++|... + .+.+.+.+||++.| ++|++++++| ++++.+||++++
T Consensus 91 G~Qll~~~lGG~V~~~-~~~e~G~~~v~~~~~~~~~~l~g~~~~~~v~~~H~~~v-~lp~~~~vlA~s~~~~~~a~~~~~ 168 (250)
T 3m3p_A 91 GGQLLAKAMGGEVTDS-PHAEIGWVRAWPQHVPQALEWLGTWDELELFEWHYQTF-SIPPGAVHILRSEHCANQAYVLDD 168 (250)
T ss_dssp HHHHHHHHTTCCEEEE-EEEEEEEEEEEECSSHHHHHHHSCSSCEEEEEEEEEEE-CCCTTEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHhCCEEEeC-CCCceeeEEEEEecCCCCcccccCCCccEEEEEcccee-ecCCCCEEEEEeCCCCEEEEEECC
Confidence 9999999999999999 778888653 1 24689999999999 8999999999 888999999997
Q ss_pred --CCCcccCCCchhhHHHHHHH
Q 007779 201 --IGPHYSGNDPREMRLVGALR 220 (590)
Q Consensus 201 --~gvQfHPEs~~~m~L~~~L~ 220 (590)
||||||||....+ +..+|+
T Consensus 169 ~~~GvQfHPE~~~~~-~~~~l~ 189 (250)
T 3m3p_A 169 LHIGFQCHIEMQAHM-VREWCS 189 (250)
T ss_dssp TEEEESSCTTCCHHH-HHHHHH
T ss_pred eeEEEEeCCcCCHHH-HHHHHH
Confidence 9999999985433 334443
No 23
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.82 E-value=1.3e-20 Score=188.36 Aligned_cols=148 Identities=12% Similarity=0.016 Sum_probs=113.6
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc-hhh-----hhHHHHHHHH-hcCCCCc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE-DEA-----FKVLDTILRS-AKGDLKD 132 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~-~~~-----g~~~~~~i~~-~~~~~Pi 132 (590)
.++++.|.++++++.++-+. ++. .++.+|+|||++||++|.+. ++. ....++ |+. +..++|+
T Consensus 19 ~~l~~~g~~~~~~~~~~~~~------~p~----~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~Pv 87 (236)
T 3l7n_A 19 AWAALRGHDVSMTKVYRYEK------LPK----DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKL-IQKAAKSEKII 87 (236)
T ss_dssp HHHHHTTCEEEEEEGGGTCC------CCS----CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHH-HHHHHHTTCEE
T ss_pred HHHHHCCCeEEEEeeeCCCC------CCC----CccccCEEEECCCCCCcccccccCcccchHHHHHH-HHHHHHcCCCE
Confidence 67888899999998753210 111 15578999999999999632 221 225677 665 5668999
Q ss_pred cc-ccchHHHHhHhCceeeccCCCCcCcccc----C-----------CceeEEeccchhccccCCCcEEEEe-ecCCcEE
Q 007779 133 EE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E-----------GERRAMNTFWPLLMRALPPDVIFIA-DPEGSIM 195 (590)
Q Consensus 133 lG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~-----------~~~~~~~ryHsl~v~~~p~~l~v~a-~~~g~im 195 (590)
|| |+|||.|+.++||+|.+. +.+++|... . ++.+.+.+||+.. ..+|++++++| ++++.++
T Consensus 88 LGIClG~QlL~~~~Gg~v~~~-~~~~~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~-~~lp~~~~vla~s~~~~~~ 165 (236)
T 3l7n_A 88 VGVCLGAQLMGVAYGADYLHS-PKKEIGNYLISLTEAGKMDSYLSDFSDDLLVGHWHGDM-PGLPDKAQVLAISQGCPRQ 165 (236)
T ss_dssp EEETHHHHHHHHHTTCCCEEE-EEEEEEEEEEEECTTGGGCGGGTTSCSEEEEEEEEEEE-CCCCTTCEEEEECSSCSCS
T ss_pred EEEchHHHHHHHHhCCEEecC-CCceeeeEEEEEccCcccChHHhcCCCCcEEEEecCCc-ccCCChheEEEECCCCCEE
Confidence 99 999999999999999998 778888653 1 1368999999986 68899999999 8888899
Q ss_pred EEEcC---CCCcccCCCchhhHHHHHHHH
Q 007779 196 GGGGS---IGPHYSGNDPREMRLVGALRE 221 (590)
Q Consensus 196 ~~~h~---~gvQfHPEs~~~m~L~~~L~k 221 (590)
|++++ ||||||||.... .+++|++.
T Consensus 166 a~~~~~~v~gvQfHPE~~~~-~~~~~~~~ 193 (236)
T 3l7n_A 166 IIKFGPKQYAFQCHLEFTPE-LVAALIAQ 193 (236)
T ss_dssp EEEEETTEEEESSBSSCCHH-HHHHHHHH
T ss_pred EEEECCCEEEEEeCCCCCHH-HHHHHHHh
Confidence 99986 999999999632 25666654
No 24
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.82 E-value=8.6e-21 Score=210.50 Aligned_cols=164 Identities=9% Similarity=-0.007 Sum_probs=118.1
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
.+|+++|.=|+ ..++++|..+.+++++. +.+++. . + .+|+||||+||+++.+ .+. ...
T Consensus 11 ~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~-~~~~i~----~-----~-~~dgIILsGGp~sv~~---~~~-~~~- 74 (527)
T 3tqi_A 11 HRILILDFGSQYAQLIARRVREIGVYCELMPCDI-DEETIR----D-----F-NPHGIILSGGPETVTL---SHT-LRA- 74 (527)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHHTCEEEEEETTC-CSSSST----T-----T-CCSEEEECCCCC-------------C-
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEEECCC-CHHHHH----h-----c-CCCEEEECCcCccccc---CCC-hhh-
Confidence 36899988776 57888999999998863 232211 1 1 4599999999999873 221 122
Q ss_pred HHH-hcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C------C--c--------eeEEeccchhccccC
Q 007779 123 LRS-AKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E------G--E--------RRAMNTFWPLLMRAL 180 (590)
Q Consensus 123 i~~-~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~------~--~--------~~~~~ryHsl~v~~~ 180 (590)
.+. +..++|+|| |+|||.|+.++||+|.+. +.+++|... + + . .+.++.+|++.|..+
T Consensus 75 ~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~-~~~e~G~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~l 153 (527)
T 3tqi_A 75 PAFIFEIGCPVLGICYGMQTMAYQLGGKVNRT-AKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSEL 153 (527)
T ss_dssp CCSTTTSSSCEEEETHHHHHHHHHSSSCBC------CEEEEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCSC
T ss_pred HHHHHhcCCCEEEEChHHHHHHHHcCCeEEeC-CCccccceEEEEcCCChhhcCCccccccccccceEEEEEcccchhcc
Confidence 222 345799999 999999999999999999 788888663 1 1 1 578999999999999
Q ss_pred CCcEEEEe-ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhhcC-CCCC
Q 007779 181 PPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLAG-GHLG 229 (590)
Q Consensus 181 p~~l~v~a-~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~~G-~~Lt 229 (590)
|++++++| ++++.|+|++|+ ||||||||. +.|.+ |++|+..+..- ++-+
T Consensus 154 p~g~~v~A~s~~~~i~ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~~i~~~~~~w~ 212 (527)
T 3tqi_A 154 PPGFEATACTDNSPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWT 212 (527)
T ss_dssp CTTCEEEEEETTEEEEEEECSSSCEEEESBCSSSTTSTTHHHHHHHHHHTTSCCCCCCC
T ss_pred CCCCEEEEEeCCCcEEEEEcCCCCEEEEEeccccccccccchhhhhhhhhcccccchhh
Confidence 99999999 888999999985 999999998 56777 99999776433 3444
No 25
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=8.9e-21 Score=182.03 Aligned_cols=151 Identities=11% Similarity=0.048 Sum_probs=109.4
Q ss_pred eeEeeccccH-----HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchh-hhhHHHHHH
Q 007779 50 RLTVKADLDS-----ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDE-AFKVLDTIL 123 (590)
Q Consensus 50 ~~~~~~~~d~-----~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~-~g~~~~~~i 123 (590)
+|.++|+-|+ .+++++|.++.++++++ + ++.+|+|||++||++|.+... .-...+. +
T Consensus 2 ~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~~~----~------------~~~~dglil~GG~~~~~~~~~~~~~~~~~-i 64 (186)
T 2ywj_A 2 IIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVE----D------------LEGIDALIIPGGESTAIGKLMKKYGLLEK-I 64 (186)
T ss_dssp EEEEECSSSCCHHHHHHHHHTTSEEEEECSGG----G------------GTTCSEEEECCSCHHHHHHHHHHTTHHHH-H
T ss_pred EEEEEecCcchHHHHHHHHHCCCEEEEECChH----H------------hccCCEEEECCCCchhhhhhhhccCHHHH-H
Confidence 4555554343 67888899999987632 1 345699999999987642110 1123455 5
Q ss_pred HHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc-----------------CC-ceeEEeccchhccccC-CCc
Q 007779 124 RSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS-----------------EG-ERRAMNTFWPLLMRAL-PPD 183 (590)
Q Consensus 124 ~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s-----------------~~-~~~~~~ryHsl~v~~~-p~~ 183 (590)
+ ..++|+|| |+|||.|+.++||++..+ . ..+|.+. .+ ..+.+.+||++.|+.+ |++
T Consensus 65 ~--~~~~PilGIC~G~Qll~~~~gg~~~~l-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~l~~~~ 140 (186)
T 2ywj_A 65 K--NSNLPILGTCAGMVLLSKGTGINQILL-E-LMDITVKRNAYGRQVDSFEKEIEFKDLGKVYGVFIRAPVVDKILSDD 140 (186)
T ss_dssp H--TCCCCEEEETHHHHHHSSCCSSCCCCC-C-CSSEEEETTTTCSSSCCEEEEEEETTTEEEEEEESSCCEEEEECCTT
T ss_pred H--hcCCcEEEECHHHHHHHHHhCCCcCcc-C-CCceeEEeccCCCcccceecccccccCCcEEEEEEecceeeecCCCC
Confidence 5 56799999 999999999999986543 2 1222221 11 3578899999999988 999
Q ss_pred EEEEe-ecCCcEEEEEcC--CCCcccCCC-chhhH-HHHHHHHh
Q 007779 184 VIFIA-DPEGSIMGGGGS--IGPHYSGND-PREMR-LVGALREV 222 (590)
Q Consensus 184 l~v~a-~~~g~im~~~h~--~gvQfHPEs-~~~m~-L~~~L~kl 222 (590)
++++| + |+.+||++|+ ||||||||- ..+.. +++|++..
T Consensus 141 ~~v~a~s-d~~~~a~~~~~~~gvQfHPE~~~~g~~l~~~F~~~~ 183 (186)
T 2ywj_A 141 VEVIARD-GDKIVGVKQGKYMALSFHPELSEDGYKVYKYFVENC 183 (186)
T ss_dssp CEEEEEE-TTEEEEEEETTEEEESSCGGGSTTHHHHHHHHHHHH
T ss_pred eEEEEEE-CCEEEEEeeCCEEEEECCCCcCCchhHHHHHHHHHH
Confidence 99999 6 8999999998 999999996 44555 78888764
No 26
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.82 E-value=2.5e-20 Score=205.73 Aligned_cols=164 Identities=13% Similarity=-0.028 Sum_probs=122.7
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
|+++|.=|+ ..++++|..+.++++|. +.+++.. + .+|+||||+||+++.++. +..+.+.
T Consensus 2 i~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~-~~~~i~~---------~-~~dgiIlsGGp~s~~~~~-~~~~~~~--- 66 (503)
T 2ywb_A 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDA-PLEEVLK---------H-RPQALILSGGPRSVFDPD-APRPDPR--- 66 (503)
T ss_dssp EEEEESSCTTHHHHHHHHHTTTCCEEEEETTC-CHHHHHT---------T-CCSEEEECCCSSCSSCTT-CCCCCGG---
T ss_pred EEEEECCCcHHHHHHHHHHHCCCEEEEEECCC-CHHHHHh---------c-CCCEEEECCCCchhccCC-CcchHHH---
Confidence 566666664 56788999999999873 3333211 1 359999999999987432 2222122
Q ss_pred HhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc---------CC--ceeEEeccchhccccCCCcEEEEe-ecC
Q 007779 125 SAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS---------EG--ERRAMNTFWPLLMRALPPDVIFIA-DPE 191 (590)
Q Consensus 125 ~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s---------~~--~~~~~~ryHsl~v~~~p~~l~v~a-~~~ 191 (590)
.+..++|+|| |+|||.|+.++||+|.+. +.+++|... .+ +.+.++.+|++.|..+|++++++| +++
T Consensus 67 ~~~~~~PvLGIC~G~Qlla~~~GG~v~~~-~~~e~G~~~v~~~~~~l~~~~~~~~~v~~~H~~~v~~lp~g~~v~A~s~~ 145 (503)
T 2ywb_A 67 LFSSGLPLLGICYGMQLLAQELGGRVERA-GRAEYGKALLTRHEGPLFRGLEGEVQVWMSHQDAVTAPPPGWRVVAETEE 145 (503)
T ss_dssp GGCSSCCEEEETHHHHHHHHTTTCEEECC----CEEEEECSEECSGGGTTCCSCCEEEEECSCEEEECCTTCEEEEECSS
T ss_pred HHhCCCCEEEECHHHHHHHHHhCCeEeeC-CCCccceEEEEecCcHHhhcCCCccEEEEECCCccccCCCCCEEEEEECC
Confidence 1335799999 999999999999999998 777888653 12 367899999999999999999999 888
Q ss_pred CcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhhcCCCCCH
Q 007779 192 GSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLAGGHLGY 230 (590)
Q Consensus 192 g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~~G~~Lt~ 230 (590)
+.|+|++|+ ||||||||. +.|.+ +++|++.....++.+.
T Consensus 146 ~~i~ai~~~~~~~~gvQFHPE~~~~~~g~~ll~~F~~~~~~~~~~~~ 192 (503)
T 2ywb_A 146 NPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVKRDWTP 192 (503)
T ss_dssp CSCSEEECTTSSEEEESBCTTSTTSTTHHHHHHHHHHHTTCCCCCCH
T ss_pred CCEEEEEeCCCCEEEEecCCCcccccccHHHHHHHHHHhhhhccccc
Confidence 999999995 999999998 45676 9999955555556664
No 27
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.82 E-value=1.9e-20 Score=207.63 Aligned_cols=168 Identities=9% Similarity=-0.013 Sum_probs=127.1
Q ss_pred ceeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHH
Q 007779 49 IRLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTI 122 (590)
Q Consensus 49 ~~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~ 122 (590)
.+|.++|.=++ ..++++|..+.++++|. +.+++.. + .+|+||||+||+++.++. +..+.+.
T Consensus 8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~-~~~~i~~---------~-~~dgiILsGGp~s~~~~~-~~~~~~~- 74 (525)
T 1gpm_A 8 HRILILDFGSQYTQLVARRVRELGVYCELWAWDV-TEAQIRD---------F-NPSGIILSGGPESTTEEN-SPRAPQY- 74 (525)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCC-CHHHHHH---------H-CCSEEEECCCSSCTTSTT-CCCCCGG-
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCEEEEEECCC-CHHHHhc---------c-CCCEEEECCcCccccccC-CcchHHH-
Confidence 46788886664 56788899999999874 2332110 2 469999999999987432 2222222
Q ss_pred HHHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----------C--Cc--------eeEEeccchhccccCC
Q 007779 123 LRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----------E--GE--------RRAMNTFWPLLMRALP 181 (590)
Q Consensus 123 i~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----------~--~~--------~~~~~ryHsl~v~~~p 181 (590)
.+..++|+|| |+|||.|+.++||+|.+. +.+++|... . +. .+.++.+|++.|..+|
T Consensus 75 --~~~~g~PvLGIC~G~Qlla~~~GG~V~~~-~~~e~G~~~v~~~~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~lp 151 (525)
T 1gpm_A 75 --VFEAGVPVFGVCYGMQTMAMQLGGHVEAS-NEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIP 151 (525)
T ss_dssp --GGTSSSCEEEETHHHHHHHHHHTCEEECC-SSCEEEEEEEEECSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEECC
T ss_pred --HHHCCCCEEEEChHHHHHHHHcCCEEEeC-CCcccceEEEEeCCCCHhhccCccccccccccceEEEEEccceeeeCC
Confidence 1234799999 999999999999999999 778888653 1 12 5789999999999999
Q ss_pred CcEEEEe-ecCCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHHhhc-CCCCCHHH
Q 007779 182 PDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLA-GGHLGYEE 232 (590)
Q Consensus 182 ~~l~v~a-~~~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~kl~~-G~~Lt~eE 232 (590)
++++++| ++++.|+|++|+ ||||||||. +.|.+ |++|+..+.. .++.|.++
T Consensus 152 ~g~~v~A~s~~~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~~i~~~~~~~~~~~ 212 (525)
T 1gpm_A 152 SDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAK 212 (525)
T ss_dssp TTCEEEEECSSCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCCCCCHHH
T ss_pred CCCEEEEECCCCCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHHhhhhccccchHHH
Confidence 9999999 888999999985 999999998 45676 9999976643 34566543
No 28
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.81 E-value=1.4e-20 Score=182.87 Aligned_cols=149 Identities=7% Similarity=0.047 Sum_probs=110.4
Q ss_pred ceeEeec----cccH--HHHHHhC-----CceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhh-
Q 007779 49 IRLTVKA----DLDS--ALIDQLG-----LKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAF- 116 (590)
Q Consensus 49 ~~~~~~~----~~d~--~~~~~lg-----~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g- 116 (590)
++|.++| |+|| .+|+++| +++.++++++- +.+|+||| ||||+|.+ +..
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~~-----------------~~~dglil-pG~g~~~~--~~~~ 60 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN-----------------DLYDLLFI-PGVGHFGE--GMRR 60 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCS-----------------SCCSEEEE-CCCSCSHH--HHHH
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCcc-----------------cCCCEEEE-CCCCcHHH--HHHH
Confidence 3678888 9998 8899999 89999987530 13489999 99999862 111
Q ss_pred ----hHHHHHHHHh-cCCCCccc-ccchHHHHhHhC------------ceeeccCC---CCcCcccc-----CC-ceeEE
Q 007779 117 ----KVLDTILRSA-KGDLKDEE-EVSKAQLGAFFS------------AMTIRANA---FPEATQWS-----EG-ERRAM 169 (590)
Q Consensus 117 ----~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~G------------~~v~~~~~---~~~hG~~s-----~~-~~~~~ 169 (590)
...++ |+++ ..++|+|| |+|||.|+.++| ++|.+. + .++.| |+ .+ +.+.+
T Consensus 61 l~~~~~~~~-i~~~~~~~~PilGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~-~~~~~~~~g-~~~l~~~~~~~~~~v 137 (201)
T 1gpw_B 61 LRENDLIDF-VRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKL-RSRRLPHMG-WNEVIFKDTFPNGYY 137 (201)
T ss_dssp HHHTTCHHH-HHHHHHTTCEEEEETHHHHTTSSEETTEEEEECCCSSSEEEEEC-CCSSCSEEE-EEEEEESSSSCCEEE
T ss_pred HHhhCHHHH-HHHHHHcCCeEEEEChhHHHHHHhhccCCCCCCcceeeeEEEEc-CCCCCCccc-ceeeEeccCCCCCeE
Confidence 14566 6655 56799999 999999999996 566655 2 12223 22 12 46889
Q ss_pred eccchhccccCCCcEEEEe-ecC-C-cEEEEEcC---CCCcccCCC--chhhH-HHHHHHHh
Q 007779 170 NTFWPLLMRALPPDVIFIA-DPE-G-SIMGGGGS---IGPHYSGND--PREMR-LVGALREV 222 (590)
Q Consensus 170 ~ryHsl~v~~~p~~l~v~a-~~~-g-~im~~~h~---~gvQfHPEs--~~~m~-L~~~L~kl 222 (590)
.+||++.|+.+ .++++| +++ | .++|++|+ ||||||||+ +.+.+ +++|++.+
T Consensus 138 ~~~H~~~v~~~--~~~vla~s~~~g~~~~a~~~~~~i~gvQfHPE~~~~~~~~l~~~f~~~~ 197 (201)
T 1gpw_B 138 YFVHTYRAVCE--EEHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECS 197 (201)
T ss_dssp EEEESEEEEEC--GGGEEEEEEETTEEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHHS
T ss_pred EEECcceeccC--CCEEEEEEccCCceEEEEEECCCEEEEECCCcccCHhHHHHHHHHHHHh
Confidence 99999999765 578888 665 6 79999987 999999998 44555 88888764
No 29
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.81 E-value=3.8e-20 Score=210.90 Aligned_cols=166 Identities=7% Similarity=-0.026 Sum_probs=114.9
Q ss_pred eeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHH
Q 007779 50 RLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTIL 123 (590)
Q Consensus 50 ~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i 123 (590)
+|.++|.=++ ..++++|+.+.++++|. +.+++. ...+|+||||+||++|.++ ++..+.+. +
T Consensus 31 ~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~-~~e~i~----------~~~~dGIILsGGp~s~~~~-~~~~~~~~-i 97 (697)
T 2vxo_A 31 AVVILDAGAQYGKVIDRRVRELFVQSEIFPLET-PAFAIK----------EQGFRAIIISGGPNSVYAE-DAPWFDPA-I 97 (697)
T ss_dssp CEEEEEEC--CHHHHHHHHHHTTCCEEEEETTC-CHHHHH----------HHTCSEEEEEECC--------CCCCCGG-G
T ss_pred EEEEEECCCchHHHHHHHHHHCCCEEEEEECCC-CHHHHh----------hcCCCEEEECCCCCcccCc-cchhHHHH-H
Confidence 6888887765 56889999999999985 233211 1357999999999998632 23322232 1
Q ss_pred HHhcCCCCccc-ccchHHHHhHhCceeeccCCCCcCcccc----C--------CceeEEeccchhccccCCCcEEEEeec
Q 007779 124 RSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWS----E--------GERRAMNTFWPLLMRALPPDVIFIADP 190 (590)
Q Consensus 124 ~~~~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s----~--------~~~~~~~ryHsl~v~~~p~~l~v~a~~ 190 (590)
+..++|+|| |+|||.|+.++||+|.++ +..+||... + ++.+.++.+|++.|+.+|++++++|..
T Consensus 98 --~~~g~PvLGIC~G~QlLa~~lGG~v~~~-~~~e~G~~~v~~~~~~~Lf~~l~~~~~v~~~H~~~V~~lp~g~~vlA~s 174 (697)
T 2vxo_A 98 --FTIGKPVLGICYGMQMMNKVFGGTVHKK-SVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARS 174 (697)
T ss_dssp --TTSSCCEEEEEHHHHHHHHHTTCCBCC--------CEEEEECTTSGGGTTCCSEEEECCCSSCCBSSCCTTCEEEEEE
T ss_pred --HhCCCCEEEECHHHHHHHHHhCCeEeec-CCCccceEEEEecCCChhhhcCCccCcceeecccceecCCCCeEEEEEe
Confidence 334699999 999999999999999999 788999653 1 236889999999999999999999933
Q ss_pred CCcEEEEEcC----CCCcccCCC---chhhH-HHHHHHH-hhcCCCCCHH
Q 007779 191 EGSIMGGGGS----IGPHYSGND---PREMR-LVGALRE-VLAGGHLGYE 231 (590)
Q Consensus 191 ~g~im~~~h~----~gvQfHPEs---~~~m~-L~~~L~k-l~~G~~Lt~e 231 (590)
++.|+|++|+ ||||||||. +.|.. +++|+.+ .....+.+.+
T Consensus 175 ~~~i~ai~~~~~~i~GvQFHPE~~~t~~g~~ll~nFl~~i~~~~~~~~~~ 224 (697)
T 2vxo_A 175 GNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQ 224 (697)
T ss_dssp TTEEEEEEETTTTEEEESSCTTSSSSTTHHHHHHHHHTTTTCCCSCCCHH
T ss_pred CCceEEEEeCCCCEEEEEecccCCCCccchhhhhhhhhccccccccchhh
Confidence 5699999986 999999998 45766 8899844 4444566643
No 30
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.79 E-value=6.4e-20 Score=178.34 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=106.8
Q ss_pred ceeEeec----cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc-hhh--hhHH
Q 007779 49 IRLTVKA----DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE-DEA--FKVL 119 (590)
Q Consensus 49 ~~~~~~~----~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~-~~~--g~~~ 119 (590)
++|.++| |+++ .+|+++|.++.++++++ + ++.+|+||| ||||+|... ... ....
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~----~------------l~~~d~lil-~G~g~~~~~~~~l~~~~~~ 65 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPK----A------------HEEADLLVL-PGQGHFGQVMRAFQESGFV 65 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTT----S------------CSSCSEEEE-CCCSCHHHHHHTTSSSCTH
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecChH----H------------cccCCEEEE-CCCCcHHHHHHHHHhcCHH
Confidence 4677777 7887 78999999999997652 1 335699999 999998521 011 3356
Q ss_pred HHHHHH-hcCCCCccc-ccchHHHHhH---hC---------ceeeccC--CCCcCcccc--------C-CceeEEeccch
Q 007779 120 DTILRS-AKGDLKDEE-EVSKAQLGAF---FS---------AMTIRAN--AFPEATQWS--------E-GERRAMNTFWP 174 (590)
Q Consensus 120 ~~~i~~-~~~~~PilG-CLGhQ~i~~~---~G---------~~v~~~~--~~~~hG~~s--------~-~~~~~~~ryHs 174 (590)
++ |++ +..++|+|| |+|||.|+.+ +| ++|.+.+ +.+++|... . .. +.+.++||
T Consensus 66 ~~-i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~~~l~~~~~-~~~~~~Hs 143 (200)
T 1ka9_H 66 ER-VRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGGAFAPLTG-RHFYFANS 143 (200)
T ss_dssp HH-HHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEECGGGGGGTT-CEEEEEES
T ss_pred HH-HHHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEEEEEechhhhcCCC-CCEEEecc
Confidence 77 665 456799999 9999999999 79 8888762 134445221 0 12 67889999
Q ss_pred hccccCCCcEEEEe-ecC-C-cEEEEEcC---CCCcccCCCc--hhhH-H---HHHHH
Q 007779 175 LLMRALPPDVIFIA-DPE-G-SIMGGGGS---IGPHYSGNDP--REMR-L---VGALR 220 (590)
Q Consensus 175 l~v~~~p~~l~v~a-~~~-g-~im~~~h~---~gvQfHPEs~--~~m~-L---~~~L~ 220 (590)
+.+ .+++. ++ | +++ | ++++++|+ ||||||||+. .+.+ + ++|++
T Consensus 144 ~~~-~~~~~-~v-a~s~~~g~~~~~~~~~~~i~gvQfHPE~~~~~g~~l~~~~~~F~~ 198 (200)
T 1ka9_H 144 YYG-PLTPY-SL-GKGEYEGTPFTALLAKENLLAPQFHPEKSGKAGLAFLALARRYFE 198 (200)
T ss_dssp EEC-CCCTT-CC-EEEEETTEEEEEEEECSSEEEESSCTTSSHHHHHHHHHHHHHHC-
T ss_pred ccc-CCCCC-cE-EEEEeCCeEEEEEEeeCCEEEEecCCCcCccchhHHHHHHHHHHh
Confidence 999 66554 45 7 665 6 79999987 9999999983 4444 5 66654
No 31
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.78 E-value=1.2e-19 Score=185.59 Aligned_cols=164 Identities=7% Similarity=-0.070 Sum_probs=110.1
Q ss_pred eeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHHh
Q 007779 53 VKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA 126 (590)
Q Consensus 53 ~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~ 126 (590)
+.||+|| ++..+++.++.|+++|+.++.... . ... ...++.+|+|||+||||.|. ..+ .+++ ++.+
T Consensus 21 ~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~-~-~~~-~~~~~~~dgiil~GG~~~~~---~~~-~~~~-i~~~ 92 (273)
T 2w7t_A 21 AGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPN-A-DEA-RKALLGCDGIFVPGGFGNRG---VDG-KCAA-AQVA 92 (273)
T ss_dssp HTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTT-T-HHH-HHHHHTCSEEEECCCCTTTT---HHH-HHHH-HHHH
T ss_pred CchHHHHHHHHHHHHHHhcCCceEEeccChhhccccc-c-hhH-HHHHhhCCEEEecCCCCCcC---chh-HHHH-HHHH
Confidence 3678888 344566888999999975432100 0 000 01255789999999999976 444 4566 6655
Q ss_pred -cCCCCccc-ccchHHHHhHhCceeec---cC--C------CC-----cCccc----------c-----C---------C
Q 007779 127 -KGDLKDEE-EVSKAQLGAFFSAMTIR---AN--A------FP-----EATQW----------S-----E---------G 164 (590)
Q Consensus 127 -~~~~PilG-CLGhQ~i~~~~G~~v~~---~~--~------~~-----~hG~~----------s-----~---------~ 164 (590)
..++|+|| |||||.|+.+|||+|.+ ++ . .+ .|++. . . +
T Consensus 93 ~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~~~~s~l~~~~~ 172 (273)
T 2w7t_A 93 RMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYIVEKSSIMAKIYS 172 (273)
T ss_dssp HHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEECCTTSHHHHHTT
T ss_pred HHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEEecCCcHHHHHhC
Confidence 35799999 99999999999999952 21 0 01 13321 0 1 1
Q ss_pred ceeEEec--cchhccc-----cC-CCcEEEEe-ecC----C-cEEEEEcC-----CCCcccCCC---ch-hhH-HHHHHH
Q 007779 165 ERRAMNT--FWPLLMR-----AL-PPDVIFIA-DPE----G-SIMGGGGS-----IGPHYSGND---PR-EMR-LVGALR 220 (590)
Q Consensus 165 ~~~~~~r--yHsl~v~-----~~-p~~l~v~a-~~~----g-~im~~~h~-----~gvQfHPEs---~~-~m~-L~~~L~ 220 (590)
....+.. .|||.|+ .+ |++++++| ++| | .|||++|+ +|||||||+ +. +.. +++|++
T Consensus 173 ~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~~~~l~~~Fv~ 252 (273)
T 2w7t_A 173 KSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPAPTYLSFMA 252 (273)
T ss_dssp TCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTTBCCHHHHHHHH
T ss_pred CCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCchHHHHHHHHH
Confidence 1334444 4688883 46 78899999 777 6 79999997 499999997 22 244 888887
Q ss_pred Hhhc
Q 007779 221 EVLA 224 (590)
Q Consensus 221 kl~~ 224 (590)
....
T Consensus 253 ~~~~ 256 (273)
T 2w7t_A 253 AAAK 256 (273)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
No 32
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.76 E-value=2.7e-19 Score=186.49 Aligned_cols=155 Identities=9% Similarity=0.012 Sum_probs=109.2
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh----hhHHHHHHHHh--cC-CCCc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA----FKVLDTILRSA--KG-DLKD 132 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~----g~~~~~~i~~~--~~-~~Pi 132 (590)
++|+++|..+.++++++ +.+++. ..++.+|+|||++||+++... .. ..+++. +++. .+ ++|+
T Consensus 59 ~~l~~~G~~~~vv~~~~-~~~~i~--------~~l~~~dglil~GG~~~v~p~-~~~~~~~~l~~~-~~~~~~~g~~~Pi 127 (315)
T 1l9x_A 59 KYLESAGARVVPVRLDL-TEKDYE--------ILFKSINGILFPGGSVDLRRS-DYAKVAKIFYNL-SIQSFDDGDYFPV 127 (315)
T ss_dssp HHHHHTTCEEEEECSSC-CHHHHH--------HHHHHSSEEEECCCCCCTTTC-HHHHHHHHHHHH-HHHHHHTTCCCCE
T ss_pred HHHHHCCCEEEEEecCC-CHHHHH--------HHHhcCCEEEEeCCCcccChh-hhhHHHHHHHHH-HHHHHhcCCCceE
Confidence 77888999999999875 222211 114567999999999997521 12 234555 3333 23 5999
Q ss_pred cc-ccchHHHHhHhCceeeccCCCCcCcccc--------CCc--------e--------eEEeccchhccc--------c
Q 007779 133 EE-EVSKAQLGAFFSAMTIRANAFPEATQWS--------EGE--------R--------RAMNTFWPLLMR--------A 179 (590)
Q Consensus 133 lG-CLGhQ~i~~~~G~~v~~~~~~~~hG~~s--------~~~--------~--------~~~~ryHsl~v~--------~ 179 (590)
|| |+|||.|+.++||++.+. +.+.||+.. .+. . ..+.+||++.|+ .
T Consensus 128 LGIC~G~Qll~~a~GG~~~~~-~~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~ 206 (315)
T 1l9x_A 128 WGTCLGFEELSLLISGECLLT-ATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEK 206 (315)
T ss_dssp EEETHHHHHHHHHHHSSCCCE-EEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHH
T ss_pred EEEChHHHHHHHHhCCccccc-cccccCCCCCeeeccCCCCChHHHhcChhhhhhccccceEEEhhhhhcCccccccccc
Confidence 99 999999999999998876 666777532 111 0 124569999997 7
Q ss_pred CCCcEEEEe-ecCCc---EEEEEcC----CCCcccCCCc------------------hhhH-HHHHHHHhhcCC
Q 007779 180 LPPDVIFIA-DPEGS---IMGGGGS----IGPHYSGNDP------------------REMR-LVGALREVLAGG 226 (590)
Q Consensus 180 ~p~~l~v~a-~~~g~---im~~~h~----~gvQfHPEs~------------------~~m~-L~~~L~kl~~G~ 226 (590)
+|++++++| ++||. ||+++|+ ||||||||.. .+.. +.+|++......
T Consensus 207 l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~~ 280 (315)
T 1l9x_A 207 LKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNN 280 (315)
T ss_dssp HHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 888999999 77886 5666885 9999999961 1334 777877765443
No 33
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.76 E-value=1.8e-18 Score=174.75 Aligned_cols=152 Identities=12% Similarity=0.053 Sum_probs=108.1
Q ss_pred HHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCC-CCCCchhh-------------hhHHHHHHHHh-
Q 007779 62 IDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQT-RPLREDEA-------------FKVLDTILRSA- 126 (590)
Q Consensus 62 ~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg-~P~~~~~~-------------g~~~~~~i~~~- 126 (590)
+++.|..+.+++.+.- .+.. ..++.+|+|||++||+ +|.-..+. -..+++ ++.+
T Consensus 37 l~~aG~~pv~lp~~~~--~~~~--------~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~l-ir~a~ 105 (254)
T 3fij_A 37 IQKVGGFPIALPIDDP--STAV--------QAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIAL-VRAAL 105 (254)
T ss_dssp HHHHTCEEEEECCCCG--GGHH--------HHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHH-HHHHH
T ss_pred HHHCCCEEEEEeCCCc--hHHH--------HHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHH-HHHHH
Confidence 4455988888876531 1010 1255779999999998 45421110 114566 6664
Q ss_pred cCCCCccc-ccchHHHHhHhCceeeccC-----CCCcCccc-------c-----C--------CceeEEeccchhccccC
Q 007779 127 KGDLKDEE-EVSKAQLGAFFSAMTIRAN-----AFPEATQW-------S-----E--------GERRAMNTFWPLLMRAL 180 (590)
Q Consensus 127 ~~~~PilG-CLGhQ~i~~~~G~~v~~~~-----~~~~hG~~-------s-----~--------~~~~~~~ryHsl~v~~~ 180 (590)
..++|+|| |+|||.|+.++||++.+.. ....|.+. . . ++.+.+.+||+..|+.+
T Consensus 106 ~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~~s~l~~~~~~~~~v~~~H~~~v~~l 185 (254)
T 3fij_A 106 DAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKL 185 (254)
T ss_dssp HTTCCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECTTSSGGGTCCTTEEECCBCSCEESSC
T ss_pred HcCCCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCCCChHHHhcCCcEEEEEeccchhhcc
Confidence 45899999 9999999999999998751 12344321 1 1 23678999999999999
Q ss_pred CCcEEEEe-ecCCcEEEEEcC------CCCcccCCCc-----hhhH-HHHHHHHhhc
Q 007779 181 PPDVIFIA-DPEGSIMGGGGS------IGPHYSGNDP-----REMR-LVGALREVLA 224 (590)
Q Consensus 181 p~~l~v~a-~~~g~im~~~h~------~gvQfHPEs~-----~~m~-L~~~L~kl~~ 224 (590)
|++++++| ++||.|+|++++ +|||||||.. .+.. +++|++.+..
T Consensus 186 ~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~ 242 (254)
T 3fij_A 186 APSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKK 242 (254)
T ss_dssp CSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHH
Confidence 99999999 889999999975 7999999973 2345 8888876543
No 34
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.73 E-value=1.7e-18 Score=191.67 Aligned_cols=161 Identities=10% Similarity=-0.092 Sum_probs=109.6
Q ss_pred eEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
+.+.|+.|| ++..++|+++.|+++|+-+++. ..-...++.+|+|||+||||+|. ..|. +++ ++
T Consensus 310 v~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~------~~~~~~L~~~DGIILpGGfGd~~---~~g~-i~~-ir 378 (550)
T 1vco_A 310 VKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEA------ADLEEAFRDVSGILVPGGFGVRG---IEGK-VRA-AQ 378 (550)
T ss_dssp C---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--------CCHHHHTTTCSCEEECCCCSSTT---HHHH-HHH-HH
T ss_pred EEEEecHHHHHHHHHHHHHHcCCeEEEEEeCcccccc------chHHHHHhcCCEEEECCCCCCcc---hhhh-HHH-HH
Confidence 568899998 3334457899999888633210 00001255679999999999997 5554 466 66
Q ss_pred Hhc-CCCCccc-ccchHHHHhHhCceeeccCCC---------CcCcccc--C---------C------------------
Q 007779 125 SAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAF---------PEATQWS--E---------G------------------ 164 (590)
Q Consensus 125 ~~~-~~~PilG-CLGhQ~i~~~~G~~v~~~~~~---------~~hG~~s--~---------~------------------ 164 (590)
.+. .++|+|| |||||.|+.+||++|.++ +. ..|+.+. + +
T Consensus 379 ~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l-~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~ 457 (550)
T 1vco_A 379 YARERKIPYLGICLGLQIAVIEFARNVAGL-KGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLH 457 (550)
T ss_dssp HHHHTTCCEEEETHHHHHHHHHHHHHTSCC-TTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHH
T ss_pred HHHHCCCcEEEECcCHHHHHHHhCcccccC-CccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCchhh
Confidence 654 5799999 999999999999999887 42 2344332 0 0
Q ss_pred -----ceeEEeccchhccc-----cCC-CcEEEEe-ecCC------cEEEEEcC----C-CCcccCCC---ch-hhH-HH
Q 007779 165 -----ERRAMNTFWPLLMR-----ALP-PDVIFIA-DPEG------SIMGGGGS----I-GPHYSGND---PR-EMR-LV 216 (590)
Q Consensus 165 -----~~~~~~ryHsl~v~-----~~p-~~l~v~a-~~~g------~im~~~h~----~-gvQfHPEs---~~-~m~-L~ 216 (590)
+.+...+.|.|.|+ .+| +++++++ ++|| .|||++|+ | |||||||+ +. +.. |.
T Consensus 458 ~iy~~~~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~ 537 (550)
T 1vco_A 458 RLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFV 537 (550)
T ss_dssp HHHCCSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHH
T ss_pred HhcCCceeeeeccceEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHH
Confidence 01123556777773 566 6899999 6664 79999997 6 99999998 22 444 88
Q ss_pred HHHHHhh
Q 007779 217 GALREVL 223 (590)
Q Consensus 217 ~~L~kl~ 223 (590)
+|++...
T Consensus 538 ~Fv~aa~ 544 (550)
T 1vco_A 538 GFVEAAL 544 (550)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 35
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.73 E-value=1.8e-18 Score=166.17 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=103.6
Q ss_pred ccccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCC-CCCCCchhhhhHHHHHHHHh-cCC-
Q 007779 55 ADLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQ-TRPLREDEAFKVLDTILRSA-KGD- 129 (590)
Q Consensus 55 ~~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGP-g~P~~~~~~g~~~~~~i~~~-~~~- 129 (590)
.++.+ ++|+++|.++.++++++ + ++.+|+|||++|| +.|.+........+. ++++ ..+
T Consensus 12 ~~~~~~~~~l~~~G~~~~~~~~~~----~------------l~~~dglil~GG~~~~~~~~~~~~~~~~~-i~~~~~~~~ 74 (191)
T 2ywd_A 12 GDFREHKEALKRLGIEAKEVRKKE----H------------LEGLKALIVPGGESTTIGKLAREYGIEDE-VRKRVEEGS 74 (191)
T ss_dssp SCHHHHHHHHHTTTCCCEEECSGG----G------------GTTCSEEEECSSCHHHHHHHHHHTTHHHH-HHHHHHTTC
T ss_pred CchHHHHHHHHHCCCEEEEeCChh----h------------hccCCEEEECCCChhhhHHhhhhhhHHHH-HHHHHHCCC
Confidence 44444 67888899999998753 1 3356999999995 333311112345677 6654 467
Q ss_pred CCccc-ccchHHHHhHhCc------------eeeccCCCCcCccc---c---CC-ceeEEeccchhccccCCCcEEEEe-
Q 007779 130 LKDEE-EVSKAQLGAFFSA------------MTIRANAFPEATQW---S---EG-ERRAMNTFWPLLMRALPPDVIFIA- 188 (590)
Q Consensus 130 ~PilG-CLGhQ~i~~~~G~------------~v~~~~~~~~hG~~---s---~~-~~~~~~ryHsl~v~~~p~~l~v~a- 188 (590)
+|+|| |+|||.|+.++|+ ++.+. ++..+... . .+ .++.+.+|||+.++.+|++++++|
T Consensus 75 ~PilGiC~G~Q~l~~~~gg~~~~~~lg~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~Hs~~v~~l~~~~~~~a~ 153 (191)
T 2ywd_A 75 LALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERN-AFGRQVESFEEDLEVEGLGSFHGVFIRAPVFRRLGEGVEVLAR 153 (191)
T ss_dssp CEEEEETHHHHHHEEEETTCTTCCCCCCEEEEEETT-CSCCSSSEEEEEEEETTTEEEEEEEESCCEEEEECTTCEEEEE
T ss_pred CeEEEECHHHHHHHHHhCCCCCCccccccceEEEcC-CcCCccccccccccccCCCceeEEEEcccceeccCCCcEEEEE
Confidence 99999 9999999999998 33333 22111000 0 11 356788999999988999999999
Q ss_pred ecCCcEEEEEcC--CCCcccCCCc-hhhHHHHHHHHh
Q 007779 189 DPEGSIMGGGGS--IGPHYSGNDP-REMRLVGALREV 222 (590)
Q Consensus 189 ~~~g~im~~~h~--~gvQfHPEs~-~~m~L~~~L~kl 222 (590)
+ |+.+||++|+ ||+|||||-. ...-+++|++.+
T Consensus 154 ~-~~~~~a~~~~~~~gvQfHPE~~~~~~l~~~f~~~~ 189 (191)
T 2ywd_A 154 L-GDLPVLVRQGKVLASSFHPELTEDPRLHRYFLELA 189 (191)
T ss_dssp E-TTEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHH
T ss_pred E-CCEEEEEEECCEEEEEeCCCCCCCcHHHHHHHHHh
Confidence 6 6889999998 9999999963 232377777653
No 36
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.71 E-value=9.9e-18 Score=162.08 Aligned_cols=156 Identities=10% Similarity=0.018 Sum_probs=106.0
Q ss_pred eeEeecccc---H--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc-hhhhhHHHHHH
Q 007779 50 RLTVKADLD---S--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE-DEAFKVLDTIL 123 (590)
Q Consensus 50 ~~~~~~~~d---~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~-~~~g~~~~~~i 123 (590)
+|.++|.-| + .+++++|.++.++++++ + ++.+|+|||++||+.+.+. .+.....+. |
T Consensus 3 ~I~il~~~~~~~~~~~~l~~~g~~~~~~~~~~----~------------l~~~d~iil~GG~~~~~~~~~~~~~~~~~-i 65 (196)
T 2nv0_A 3 TIGVLGLQGAVREHIHAIEACGAAGLVVKRPE----Q------------LNEVDGLILPGGESTTMRRLIDTYQFMEP-L 65 (196)
T ss_dssp EEEEECSSSCCHHHHHHHHHTTCEEEEECSGG----G------------GGGCSEEEECCSCHHHHHHHHHHTTCHHH-H
T ss_pred EEEEEEccCCcHHHHHHHHHCCCEEEEeCChH----H------------HhhCCEEEECCCChhhHHHHhhhHHHHHH-H
Confidence 455665433 3 67888899988886531 1 3456999999998665411 011233566 6
Q ss_pred HHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCc--------Cccc------c---C--CceeEEeccchhccccCCC
Q 007779 124 RSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPE--------ATQW------S---E--GERRAMNTFWPLLMRALPP 182 (590)
Q Consensus 124 ~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~--------hG~~------s---~--~~~~~~~ryHsl~v~~~p~ 182 (590)
+.+ ..++|++| |+|||.|+.++|+.+.+. -... +|.. . . |.++.+.++|++.|+.+|+
T Consensus 66 ~~~~~~~~pilgIC~G~q~l~~~~gg~~~~~-lg~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~~~~ 144 (196)
T 2nv0_A 66 REFAAQGKPMFGTCAGLIILAKEIAGSDNPH-LGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGE 144 (196)
T ss_dssp HHHHHTTCCEEEETHHHHHHSBCCC----CC-CCCSCEEEECCCSCTTTSEEEEEECCTTCSSCEEEEEESCCEEEEECT
T ss_pred HHHHHCCCcEEEECHHHHHHHHHhcCCCCCc-ccCCceeEeccCCCcccccccCCcccccCCCceEEEEEecceecccCC
Confidence 654 56799999 999999999999965322 1111 1211 0 1 3478889999999988899
Q ss_pred cEEEEeecCCcEEEEEcC--CCCcccCCCchhhH-HHHHHHHhh
Q 007779 183 DVIFIADPEGSIMGGGGS--IGPHYSGNDPREMR-LVGALREVL 223 (590)
Q Consensus 183 ~l~v~a~~~g~im~~~h~--~gvQfHPEs~~~m~-L~~~L~kl~ 223 (590)
+++++|..|+.++|+++. +|+|||||...... +++|++.+.
T Consensus 145 ~~~v~a~~d~~~~a~~~~~~~gvQfHPE~~~~~~l~~~fl~~~~ 188 (196)
T 2nv0_A 145 NVEVLSEHNGRIVAAKQGQFLGCSFHPELTEDHRVTQLFVEMVE 188 (196)
T ss_dssp TCEEEEEETTEEEEEEETTEEEESSCTTSSSCCHHHHHHHHHHH
T ss_pred CcEEEEEECCEEEEEEECCEEEEEECCccCCchHHHHHHHHHHH
Confidence 999999337899999988 99999999854433 677776654
No 37
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.70 E-value=1.6e-17 Score=163.93 Aligned_cols=157 Identities=10% Similarity=0.021 Sum_probs=111.0
Q ss_pred cceeEeeccccH-----HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc-hhhhhHHHH
Q 007779 48 RIRLTVKADLDS-----ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE-DEAFKVLDT 121 (590)
Q Consensus 48 ~~~~~~~~~~d~-----~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~-~~~g~~~~~ 121 (590)
+++|.++++.++ .+|++.|.++.++++++ + ++.+|+|||++||+.+.+. .......++
T Consensus 23 ~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~~~----~------------l~~~Dglil~GG~~~~~~~~~~~~~~~~~ 86 (219)
T 1q7r_A 23 NMKIGVLGLQGAVREHVRAIEACGAEAVIVKKSE----Q------------LEGLDGLVLPGGESTTMRRLIDRYGLMEP 86 (219)
T ss_dssp CCEEEEESCGGGCHHHHHHHHHTTCEEEEECSGG----G------------GTTCSEEEECCCCHHHHHHHHHHTTCHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHCCCEEEEECCHH----H------------HhhCCEEEECCCChHHHHHHhhhhHHHHH
Confidence 456777776553 45777899998887631 1 3456999999998755310 001223566
Q ss_pred HHHHh-cCCCCccc-ccchHHHHhHhCceeeccCCCCc--------Cccc-------c--CC--ceeEEeccchhccccC
Q 007779 122 ILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIRANAFPE--------ATQW-------S--EG--ERRAMNTFWPLLMRAL 180 (590)
Q Consensus 122 ~i~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~~--------hG~~-------s--~~--~~~~~~ryHsl~v~~~ 180 (590)
|+++ ..++|+|| |+|+|.|+.++|+.+.+. -... +|.. . .+ ..+.+.++|++.|+.+
T Consensus 87 -i~~~~~~~~PilGIC~G~QlL~~~~gg~~~~~-lg~~~~~~~~~~~g~~~~~~~~~~~~~g~g~~~~~~~~h~~~v~~l 164 (219)
T 1q7r_A 87 -LKQFAAAGKPMFGTCAGLILLAKRIVGYDEPH-LGLMDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVEA 164 (219)
T ss_dssp -HHHHHHTTCCEEEETTHHHHHEEEEESSCCCC-CCCEEEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEEEEE
T ss_pred -HHHHHHcCCeEEEECHHHHHHHHHhCCCCcCC-cCccceEEEecCCCccccceecCcccCCCCCceEEEEEecceeecc
Confidence 6654 56799999 999999999999976432 1111 1111 0 22 4678899999999889
Q ss_pred CCcEEEEe-ecCCcEEEEEcC--CCCcccCCCchhhH-HHHHHHHhh
Q 007779 181 PPDVIFIA-DPEGSIMGGGGS--IGPHYSGNDPREMR-LVGALREVL 223 (590)
Q Consensus 181 p~~l~v~a-~~~g~im~~~h~--~gvQfHPEs~~~m~-L~~~L~kl~ 223 (590)
|++++++| + ||.++|+++. +|+|||||...... +++|++.+.
T Consensus 165 ~~~~~v~a~s-dg~~ea~~~~~i~GvQfHPE~~~~~~l~~~fl~~~~ 210 (219)
T 1q7r_A 165 GDGVDVLATY-NDRIVAARQGQFLGCSFHPELTDDHRLMQYFLNMVK 210 (219)
T ss_dssp CTTCEEEEEE-TTEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHHH
T ss_pred CCCcEEEEEc-CCEEEEEEECCEEEEEECcccCCCHHHHHHHHHHHH
Confidence 99999999 6 8999999998 99999999854433 777776653
No 38
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.69 E-value=1.2e-17 Score=184.76 Aligned_cols=160 Identities=7% Similarity=-0.036 Sum_probs=109.7
Q ss_pred eEeeccccH--HHHHHhC----CceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHH
Q 007779 51 LTVKADLDS--ALIDQLG----LKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILR 124 (590)
Q Consensus 51 ~~~~~~~d~--~~~~~lg----~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~ 124 (590)
+.+.|+.|| ..|.+.| .+|.++++|+-++... ... .++.+|+||||||||+|. ..+ .+++ ++
T Consensus 299 v~l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~---~~~----~l~~~DGIilsGGpg~~~---~~g-~~~~-i~ 366 (545)
T 1s1m_A 299 IELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETR---GVE----ILKGLDAILVPGGFGYRG---VEG-MITT-AR 366 (545)
T ss_dssp CSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHH---CTT----TTTTCSEEEECCCCSSTT---HHH-HHHH-HH
T ss_pred EEEEEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhh---hhh----hhhcCCEEEECCCCCCcc---chh-hHHH-HH
Confidence 567889998 4455554 5678888875332210 001 145679999999999997 444 3456 66
Q ss_pred Hhc-CCCCccc-ccchHHHHhHhCceeeccCCCC---------cCcccc------------C------------------
Q 007779 125 SAK-GDLKDEE-EVSKAQLGAFFSAMTIRANAFP---------EATQWS------------E------------------ 163 (590)
Q Consensus 125 ~~~-~~~PilG-CLGhQ~i~~~~G~~v~~~~~~~---------~hG~~s------------~------------------ 163 (590)
.+. .++|+|| |||||.|+.+||++|.++ +.. .|+..+ +
T Consensus 367 ~a~~~~~PiLGIClG~Qll~va~Gg~v~~l-~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~ 445 (545)
T 1s1m_A 367 FARENNIPYLGICLGMQVALIDYARHVANM-ENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQ 445 (545)
T ss_dssp HHHHTTCCEEEETHHHHHHHHHHHHHHHCC-TTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEE
T ss_pred HHHHCCCcEEEECChHHHHHHHhCCceecC-CCCcccccCCCCCCceEEeecccccccccccccccccccCcccccccee
Confidence 554 5799999 999999999999999876 432 222211 0
Q ss_pred -------------C-ceeEEeccchhccc-----cCC-CcEEEEe-ecCC-cEEEEEcC----C-CCcccCCC---ch-h
Q 007779 164 -------------G-ERRAMNTFWPLLMR-----ALP-PDVIFIA-DPEG-SIMGGGGS----I-GPHYSGND---PR-E 212 (590)
Q Consensus 164 -------------~-~~~~~~ryHsl~v~-----~~p-~~l~v~a-~~~g-~im~~~h~----~-gvQfHPEs---~~-~ 212 (590)
+ ..+...+.|.+.|+ .++ ++++++| ++|| .|||++|+ | |||||||+ +. +
T Consensus 446 v~l~~~s~l~~iyg~~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~~g 525 (545)
T 1s1m_A 446 CQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDG 525 (545)
T ss_dssp EEECTTCHHHHHTTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTC
T ss_pred eEeccCCHHHHhcCCceEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCCCh
Confidence 0 01234567777773 454 7899999 7888 79999997 5 99999997 32 4
Q ss_pred hH-HHHHHHHhh
Q 007779 213 MR-LVGALREVL 223 (590)
Q Consensus 213 m~-L~~~L~kl~ 223 (590)
.. |.+|++...
T Consensus 526 ~~LF~~Fv~aa~ 537 (545)
T 1s1m_A 526 HPLFAGFVKAAS 537 (545)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 44 788877543
No 39
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.66 E-value=8.7e-17 Score=157.36 Aligned_cols=153 Identities=9% Similarity=0.005 Sum_probs=104.4
Q ss_pred cceeEeecc---ccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh---hhHH
Q 007779 48 RIRLTVKAD---LDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA---FKVL 119 (590)
Q Consensus 48 ~~~~~~~~~---~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~---g~~~ 119 (590)
+++|.++|. +.+ ..|++.|.++.++++++ + ++.+|+|||+.| .|...++. ....
T Consensus 20 ~~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~~~----~------------l~~~d~iil~GG--~~~~~~~~~~~~~~~ 81 (208)
T 2iss_D 20 HMKIGVLGVQGDVREHVEALHKLGVETLIVKLPE----Q------------LDMVDGLILPGG--ESTTMIRILKEMDMD 81 (208)
T ss_dssp CCEEEEECSSSCHHHHHHHHHHTTCEEEEECSGG----G------------GGGCSEEEECSS--CHHHHHHHHHHTTCH
T ss_pred CcEEEEEECCCchHHHHHHHHHCCCEEEEeCChH----H------------HhhCCEEEECCC--cHHHHHhhhhhhhHH
Confidence 567777764 222 45667799988887542 1 335699999554 45421111 1135
Q ss_pred HHHHHHh-cCCCCccc-ccchHHHHhHhCc-----------eeeccCCCCcCc-------ccc--CCceeEEeccchhcc
Q 007779 120 DTILRSA-KGDLKDEE-EVSKAQLGAFFSA-----------MTIRANAFPEAT-------QWS--EGERRAMNTFWPLLM 177 (590)
Q Consensus 120 ~~~i~~~-~~~~PilG-CLGhQ~i~~~~G~-----------~v~~~~~~~~hG-------~~s--~~~~~~~~ryHsl~v 177 (590)
+. |+++ ..++|+|| |+|+|.|+.++|+ ++.+. +.+.+. .+. .+.++.+.++|++.|
T Consensus 82 ~~-i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 159 (208)
T 2iss_D 82 EK-LVERINNGLPVFATCAGVILLAKRIKNYSQEKLGVLDITVERN-AYGRQVESFETFVEIPAVGKDPFRAIFIRAPRI 159 (208)
T ss_dssp HH-HHHHHHTTCCEEEETHHHHHHEEEEC---CCCCCCEEEEEETT-TTCSGGGCEEEEECCGGGCSSCEEEEESSCCEE
T ss_pred HH-HHHHHHCCCeEEEECHHHHHHHHHcCCCCCCCccccceEEEec-CCCcccccccCCcccccCCCCceEEEEEeCccc
Confidence 66 6654 56799999 9999999999999 66665 322110 000 124788999999999
Q ss_pred ccCCCcEEEEeecCCcEEEEEcC--CCCcccCCCchhhH-HHHHHH
Q 007779 178 RALPPDVIFIADPEGSIMGGGGS--IGPHYSGNDPREMR-LVGALR 220 (590)
Q Consensus 178 ~~~p~~l~v~a~~~g~im~~~h~--~gvQfHPEs~~~m~-L~~~L~ 220 (590)
+.+|++++++|..|+.+||+++. ||+|||||...... +++|++
T Consensus 160 ~~~~~~~~v~a~~d~~~~a~~~~~i~GvQfHPE~~~~~~l~~~fl~ 205 (208)
T 2iss_D 160 VETGKNVEILATYDYDPVLVKEGNILACTFHPELTDDLRLHRYFLE 205 (208)
T ss_dssp EEECSSCEEEEEETTEEEEEEETTEEEESSCGGGSSCCHHHHHHHT
T ss_pred ccCCCCcEEEEEECCEEEEEEECCEEEEEeCCCcCCcHHHHHHHHH
Confidence 88899999999337999999988 99999999854433 666664
No 40
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.63 E-value=2.2e-16 Score=162.56 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=88.1
Q ss_pred ccCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhHhCceeec---cC--CC-----------
Q 007779 94 LEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSAMTIR---AN--AF----------- 155 (590)
Q Consensus 94 ~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~G~~v~~---~~--~~----------- 155 (590)
++.+|+|||++|||+|. .. ..+++ ++.+ ..++|+|| |+|||.|+.+|||+|.+ ++ .+
T Consensus 88 l~~~dgiil~GG~~~~~---~~-~~~~~-i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~ 162 (289)
T 2v4u_A 88 LCKADGILVPGGFGIRG---TL-GKLQA-ISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVID 162 (289)
T ss_dssp HHHCSEEEECSCCSSTT---HH-HHHHH-HHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEE
T ss_pred HhhCCEEEecCCCCchh---HH-HHHHH-HHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceec
Confidence 45679999999999966 33 35666 6665 46799999 99999999999999962 21 01
Q ss_pred -CcCccc----------c------C--------CceeEEecc--chhcc-----ccCC-CcEEEEe-ecCCc-EEEEEcC
Q 007779 156 -PEATQW----------S------E--------GERRAMNTF--WPLLM-----RALP-PDVIFIA-DPEGS-IMGGGGS 200 (590)
Q Consensus 156 -~~hG~~----------s------~--------~~~~~~~ry--Hsl~v-----~~~p-~~l~v~a-~~~g~-im~~~h~ 200 (590)
+.|++. . . ++.+.+..+ |+|.| +.+| ++++++| ++||. |||++|+
T Consensus 163 ~~~h~~~~~~~~~~~g~~~v~~~~~~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~ 242 (289)
T 2v4u_A 163 MPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELA 242 (289)
T ss_dssp CCBCCTTCSSCBCEEEEEEEEESCSCCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEES
T ss_pred chhhcccccCCccccceEEEEEecCCCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcC
Confidence 035431 1 1 222445444 45554 5788 8999999 88997 9999997
Q ss_pred ----C-CCcccCCCc---h-hhH-HHHHHHHhh
Q 007779 201 ----I-GPHYSGNDP---R-EMR-LVGALREVL 223 (590)
Q Consensus 201 ----~-gvQfHPEs~---~-~m~-L~~~L~kl~ 223 (590)
+ |||||||+. . +.. +.+|++.+.
T Consensus 243 ~~p~~lGvQfHPE~~~~~~~~~~lf~~Fv~~~~ 275 (289)
T 2v4u_A 243 NHPYFVGVQFHPEFSSRPMKPSPPYLGLLLAAT 275 (289)
T ss_dssp SSSCEEEESSBGGGGCBTTBCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCCCCCchHHHHHHHHHHHH
Confidence 4 999999982 2 334 777776553
No 41
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.60 E-value=1e-15 Score=167.42 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=107.9
Q ss_pred eeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhhHHHHHHHHh
Q 007779 53 VKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSA 126 (590)
Q Consensus 53 ~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~ 126 (590)
+.|+-+| +.-.+++.+|.+..+|+.+++..+... ...++.+|+||++||||+|. ..|. ++. ++.+
T Consensus 305 l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~----~~~L~~~DgIIlpGG~G~~~---~~g~-i~~-ir~a 375 (535)
T 3nva_A 305 LKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNL----NEILGNVNGIIVLPGFGSRG---AEGK-IKA-IKYA 375 (535)
T ss_dssp SGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCC----TTTTTSCSEEEECCCCSSTT---HHHH-HHH-HHHH
T ss_pred CchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccch----hhhccCCCEEEECCCCCCcc---HHHH-HHH-HHHH
Confidence 4567777 344556789999998876554211000 01266789999999999987 5554 456 6654
Q ss_pred c-CCCCccc-ccchHHHHhHhCceeeccCC------C------C----cCcc--------c-----c-----C-------
Q 007779 127 K-GDLKDEE-EVSKAQLGAFFSAMTIRANA------F------P----EATQ--------W-----S-----E------- 163 (590)
Q Consensus 127 ~-~~~PilG-CLGhQ~i~~~~G~~v~~~~~------~------~----~hG~--------~-----s-----~------- 163 (590)
. .++|+|| |+|||.|+.+||+.|... + + | +|.+ + . .
T Consensus 376 ~~~~~PiLGIClG~Qll~va~Gg~v~g~-qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~gS~L~~i 454 (535)
T 3nva_A 376 REHNIPFLGICFGFQLSIVEFARDVLGL-SEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKEGTIAYQL 454 (535)
T ss_dssp HHHTCCEEEETHHHHHHHHHHHHTTTCC-TTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEEEECTTSHHHHH
T ss_pred HHcCCcEEEECcchhHHHHHhhccccCc-cCCcccccCCCCCCCeeecchhcccccccCCccccCceEEEEcCCCcHHHH
Confidence 3 5799999 999999999999999532 1 1 1 1211 1 0 1
Q ss_pred -CceeEEe-ccchhccc-----cC-CCcEEEEe-ecCCcEEEEEcC-----CCCcccCCC---c-hhhH-HHHHHHHh
Q 007779 164 -GERRAMN-TFWPLLMR-----AL-PPDVIFIA-DPEGSIMGGGGS-----IGPHYSGND---P-REMR-LVGALREV 222 (590)
Q Consensus 164 -~~~~~~~-ryHsl~v~-----~~-p~~l~v~a-~~~g~im~~~h~-----~gvQfHPEs---~-~~m~-L~~~L~kl 222 (590)
|+..... ..|.+.|+ .+ +++|+++| ++||.|||++|+ +|||||||. + .+.. +.+|++..
T Consensus 455 yG~~~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~Fv~Aa 532 (535)
T 3nva_A 455 YGKKVVYERHRHRYEVNPKYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAV 532 (535)
T ss_dssp HTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHHHHHH
T ss_pred hCCCeeeecccccceechHHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHHHHHH
Confidence 2222223 33777773 34 67899999 899999999997 699999997 2 2344 78887654
No 42
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.60 E-value=2e-15 Score=147.05 Aligned_cols=143 Identities=10% Similarity=-0.005 Sum_probs=100.4
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCc-----hhhhhHHHHHHHHh-cCCCCcc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLRE-----DEAFKVLDTILRSA-KGDLKDE 133 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~-----~~~g~~~~~~i~~~-~~~~Pil 133 (590)
..|++.|.++.++++++ + ++.+|+|||+.|++.+... .......+. |+++ ...+|++
T Consensus 21 ~~l~~~g~~~~~~~~~~----~------------~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~pil 83 (213)
T 3d54_D 21 HALEINGFEPSYVGLDD----K------------LDDYELIILPGGFSYGDYLRPGAVAAREKIAFE-IAKAAERGKLIM 83 (213)
T ss_dssp HHHHTTTCEEEEECTTC----C------------CSSCSEEEECEECGGGGCSSTTHHHHTSTTHHH-HHHHHHHTCEEE
T ss_pred HHHHHCCCEEEEEecCC----C------------cccCCEEEECCCCchhhhhccccccccHHHHHH-HHHHHHCCCEEE
Confidence 56777799999887652 1 3456999996666544321 012335666 6554 4579999
Q ss_pred c-ccchHHHHhH--hCceeeccCCCC-cCcccc----C------------CceeEEeccc---hhccccCCCcEEEEe-e
Q 007779 134 E-EVSKAQLGAF--FSAMTIRANAFP-EATQWS----E------------GERRAMNTFW---PLLMRALPPDVIFIA-D 189 (590)
Q Consensus 134 G-CLGhQ~i~~~--~G~~v~~~~~~~-~hG~~s----~------------~~~~~~~ryH---sl~v~~~p~~l~v~a-~ 189 (590)
| |+|+|.|+.+ +|++|.+. +.. .|.++. . +..+.+.++| |+.+. |+.++++| +
T Consensus 84 gIC~G~qlLa~aGll~g~v~~~-~~~~~~~g~~~v~~~~~~~~l~~~~~~~~~~~~~~~H~~~s~~~~--~~~~~~~a~~ 160 (213)
T 3d54_D 84 GICNGFQILIEMGLLKGALLQN-SSGKFICKWVDLIVENNDTPFTNAFEKGEKIRIPIAHGFGRYVKI--DDVNVVLRYV 160 (213)
T ss_dssp ECHHHHHHHHHHTSSCSEEECC-SSSSCBCCEEEEEECCCSSTTSTTSCTTCEEEEECCBSSCEEECS--SCCEEEEEES
T ss_pred EECHHHHHHHHcCCCCCCeecC-CCCceEeeeEEEEeCCCCCceeeccCCCCEEEEEeecCceEEEec--CCCcEEEEEc
Confidence 9 9999999999 99999987 432 355443 1 1257778899 88873 46788988 5
Q ss_pred cC--C---cEEEEEcC----CCCcccCCCc--------hhhH-HHHHHHHh
Q 007779 190 PE--G---SIMGGGGS----IGPHYSGNDP--------REMR-LVGALREV 222 (590)
Q Consensus 190 ~~--g---~im~~~h~----~gvQfHPEs~--------~~m~-L~~~L~kl 222 (590)
++ | .|||+.|+ ||||||||.. .+.. +++|++.+
T Consensus 161 ~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~ 211 (213)
T 3d54_D 161 KDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSILNYL 211 (213)
T ss_dssp SCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHHHHC
T ss_pred CCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHHHHh
Confidence 55 5 79999984 9999999973 2444 77777654
No 43
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.59 E-value=1.3e-16 Score=177.87 Aligned_cols=157 Identities=13% Similarity=0.002 Sum_probs=108.0
Q ss_pred eeEeeccccH------HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhh---hhHHH
Q 007779 50 RLTVKADLDS------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEA---FKVLD 120 (590)
Q Consensus 50 ~~~~~~~~d~------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~---g~~~~ 120 (590)
+|.++|.-++ ++|+++|.++.++++++. . .++.+|+||| ||||+|....+. ....+
T Consensus 6 ~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~--~------------~l~~~DglIL-pGgG~~~~~~~~l~~~~~~~ 70 (555)
T 1jvn_A 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKD--F------------NISGTSRLIL-PGVGNYGHFVDNLFNRGFEK 70 (555)
T ss_dssp EEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGG--C------------CSTTCSCEEE-EECSCHHHHHHHHHHTTCHH
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCEEEEECCccc--c------------ccccCCEEEE-CCCCchHhHhhhhhhccHHH
Confidence 5666663222 678888999999886531 1 1345689999 999987621100 11356
Q ss_pred HHHHHh-cCCCCccc-ccchHHHHhHh------------CceeeccC----CCCcCcccc--------C--CceeEEecc
Q 007779 121 TILRSA-KGDLKDEE-EVSKAQLGAFF------------SAMTIRAN----AFPEATQWS--------E--GERRAMNTF 172 (590)
Q Consensus 121 ~~i~~~-~~~~PilG-CLGhQ~i~~~~------------G~~v~~~~----~~~~hG~~s--------~--~~~~~~~ry 172 (590)
. |+++ ..++|+|| |+|||.|+.++ |++|.+.+ +.++||..+ . +..+.+.+|
T Consensus 71 ~-i~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~~~~L~~~l~~~~~~~~v 149 (555)
T 1jvn_A 71 P-IREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDPYKRYYFV 149 (555)
T ss_dssp H-HHHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCCCTTCCTTCCTTSCEEEE
T ss_pred H-HHHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEEcCHHHhhCCCCceEEEE
Confidence 6 5554 56799999 99999999998 88998762 246667432 1 123467889
Q ss_pred chhccccC-------CCcEEEEe-ec---CCcEEEEEcC--CCCcccCCCc--hhhH-HHHHHHHh
Q 007779 173 WPLLMRAL-------PPDVIFIA-DP---EGSIMGGGGS--IGPHYSGNDP--REMR-LVGALREV 222 (590)
Q Consensus 173 Hsl~v~~~-------p~~l~v~a-~~---~g~im~~~h~--~gvQfHPEs~--~~m~-L~~~L~kl 222 (590)
||+++..+ |+++.++| ++ |+.+||+++. ||||||||-. .+.+ +++|++..
T Consensus 150 HS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~~~i~GvQFHPE~s~~~g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 150 HSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQ 215 (555)
T ss_dssp ESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEETTEEEESSBGGGSHHHHHHHHHHHHTTC
T ss_pred EEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEeCCEEEEEeCcEecChhHHHHHHHHHhcc
Confidence 99999532 56677887 54 5789999987 9999999963 3455 77777543
No 44
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.38 E-value=1.6e-13 Score=135.70 Aligned_cols=145 Identities=9% Similarity=-0.051 Sum_probs=96.1
Q ss_pred HHHHHh---CCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCC--chh-hhhHHHHHHHH-hcC-CCC
Q 007779 60 ALIDQL---GLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLR--EDE-AFKVLDTILRS-AKG-DLK 131 (590)
Q Consensus 60 ~~~~~l---g~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~--~~~-~g~~~~~~i~~-~~~-~~P 131 (590)
..|+.+ |.++.+++++ ++ ++.+|+|||+.||..... ..+ .....+. |++ +.. ++|
T Consensus 20 ~~l~~~~~~G~~~~~~~~~----~~------------l~~~dglil~GG~~~~~~~~~~~d~~~~~~~-i~~~~~~~g~P 82 (227)
T 2abw_A 20 NHFIKLQIPSLNIIQVRNV----HD------------LGLCDGLVIPGGESTTVRRCCAYENDTLYNA-LVHFIHVLKKP 82 (227)
T ss_dssp HHHHTTCCTTEEEEEECSH----HH------------HHTCSEEEECCSCHHHHHHHTTHHHHHHHHH-HHHHHHTSCCC
T ss_pred HHHHHhccCCeEEEEEcCc----cc------------cccCCEEEECCCcHHHHHHHHHHhHHHHHHH-HHHHHHhcCCE
Confidence 667777 8877777643 11 345699999888733210 001 1234566 555 456 799
Q ss_pred ccc-ccchHHHHhHhCceeeccCC---CCcC------------ccc----------cC-----CceeEEeccchhccccC
Q 007779 132 DEE-EVSKAQLGAFFSAMTIRANA---FPEA------------TQW----------SE-----GERRAMNTFWPLLMRAL 180 (590)
Q Consensus 132 ilG-CLGhQ~i~~~~G~~v~~~~~---~~~h------------G~~----------s~-----~~~~~~~ryHsl~v~~~ 180 (590)
+|| |+|+|.|+.++|+.+... . ..+- |.. .. |..|..+..|++.|..+
T Consensus 83 ilGIC~G~QlL~~~~gg~~~~~-~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~~ 161 (227)
T 2abw_A 83 IWGTCAGCILLSKNVENIKLYS-NFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREI 161 (227)
T ss_dssp EEEETHHHHHTEEEEECCCSCC-TTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEESCCEEEEE
T ss_pred EEEECHHHHHHHHHhcCCcccc-ccccccccCceeEEEEecCCCccccccccccccccccccCCCceeEEEEEcceEeec
Confidence 999 999999999999975221 0 0000 100 00 34566677788888777
Q ss_pred -CCcEEEEe-ec-----CCcEEEEEcC--CCCcccCCCchhhH-HHHHHHHh
Q 007779 181 -PPDVIFIA-DP-----EGSIMGGGGS--IGPHYSGNDPREMR-LVGALREV 222 (590)
Q Consensus 181 -p~~l~v~a-~~-----~g~im~~~h~--~gvQfHPEs~~~m~-L~~~L~kl 222 (590)
|++++++| ++ |+.++|++.. +|+|||||-....+ +++|++.+
T Consensus 162 ~~~~~~vla~~~~~~~g~~~~~a~~~~~v~gvQfHPE~~~~~~l~~~Fl~~~ 213 (227)
T 2abw_A 162 LSDEVKVLATFSHESYGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYFYEKV 213 (227)
T ss_dssp CCTTCEEEEEEEETTTEEEEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHH
T ss_pred CCCCcEEEEEcccccCCCCceEEEEECCEEEEEECCeeCCCcHHHHHHHHHH
Confidence 99999999 54 6889999887 99999999744334 77777654
No 45
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=98.98 E-value=1.3e-09 Score=112.74 Aligned_cols=128 Identities=9% Similarity=-0.086 Sum_probs=78.4
Q ss_pred cCCCeEEECCCCCCCCCchhh---hhHHHHHHHHh-cCCCCccc-ccchHHHHhHhCc-eeeccCCCCcCcccc------
Q 007779 95 EAQAKVCTGPTQTRPLREDEA---FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSA-MTIRANAFPEATQWS------ 162 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~---g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~G~-~v~~~~~~~~hG~~s------ 162 (590)
+.+||+||..||=.....++. ....++ ++.. ...+|+|| |+|||++..++|| ..... +.-.-|-..
T Consensus 98 ~~~DglIITGap~~~~~~ed~~yw~el~~l-i~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~-~~K~~Gv~~~~~~~~ 175 (301)
T 2vdj_A 98 EKFDGLIITGAPVETLSFEEVDYWEELKRI-MEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPL-KEKMFGVFEHEVREQ 175 (301)
T ss_dssp SCEEEEEECCCTTTTSCGGGSTTHHHHHHH-HHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEE-EEEEEEEEEEEECCS
T ss_pred cccCEEEECCCCCcCCCcccCchHHHHHHH-HHHHHHcCCcEEEEcHHHHHHHHHhCCCccccC-CCCEEEEEEEEecCC
Confidence 568999999999554322233 234444 5554 34699999 9999996666655 33333 222222110
Q ss_pred -----CC--ceeEEe--cc---chhccccCCCcEEEEe-ecCCcEEEEEc---C-CCCcccCCCchhhHHHHHHHHhhcC
Q 007779 163 -----EG--ERRAMN--TF---WPLLMRALPPDVIFIA-DPEGSIMGGGG---S-IGPHYSGNDPREMRLVGALREVLAG 225 (590)
Q Consensus 163 -----~~--~~~~~~--ry---Hsl~v~~~p~~l~v~a-~~~g~im~~~h---~-~gvQfHPEs~~~m~L~~~L~kl~~G 225 (590)
.| ..|.+- || |...|..+| +++++| +++..+.+++. + +|||||||=....--..+.+.+.+|
T Consensus 176 ~~pL~~g~~~~f~~phsr~~~~~~~~v~~~p-ga~vLA~S~~~~~~~~~~~~~~~~~vQgHpEyd~~~l~~ey~rd~~~~ 254 (301)
T 2vdj_A 176 HVKLLQGFDELFFAVHSRHTEVRESDIREVK-ELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCDTLKQEYERDRDKG 254 (301)
T ss_dssp SCGGGTTCCSEEEEEEEEEEECCHHHHHTCT-TEEEEEEETTTEEEEEEEGGGTEEEECSCTTCCTTHHHHHHHHHHHHT
T ss_pred CCccccCCCCceEeeeEeccCcCHHHccCCC-CCEEEEeCCCCcceEEEecCCCEEEEECCCCCCHHHHHHHHHHHHHcc
Confidence 12 345443 44 556565665 899999 77777777765 2 9999999974443333455555554
No 46
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=98.84 E-value=8.3e-09 Score=107.04 Aligned_cols=128 Identities=7% Similarity=-0.080 Sum_probs=76.8
Q ss_pred cCCCeEEECCCCCCCCCchhh---hhHHHHHHHHh-cCCCCccc-ccchHHHHhHhCc-eeeccCCCCcCcccc------
Q 007779 95 EAQAKVCTGPTQTRPLREDEA---FKVLDTILRSA-KGDLKDEE-EVSKAQLGAFFSA-MTIRANAFPEATQWS------ 162 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~---g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~G~-~v~~~~~~~~hG~~s------ 162 (590)
+.+||+||..+|=.....++. ....++ ++.. ...+|+|| |+|||+++.++|| ..... +.-.-|-..
T Consensus 110 ~~~DglIITGsP~~~~~~ed~~yw~el~~l-i~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~-~~K~~Gv~~~~~~~~ 187 (312)
T 2h2w_A 110 RKFDGFIITGAPVELLPFEEVDYWEELTEI-MEWSRHNVYSTMFICWAAQAGLYYFYGIPKYEL-PQKLSGVYKHRVAKD 187 (312)
T ss_dssp CCEEEEEECCCSCTTSCGGGSTTHHHHHHH-HHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEE-EEEEEEEEEEEESSC
T ss_pred cCcCEEEECCCCCCCCCCccCchHHHHHHH-HHHHHHcCCcEEEECHHHHHHHHHhCCCccccC-CCCEEEEEEEEEcCC
Confidence 568999999999654322233 234444 5544 34699999 9999996666666 33332 222222110
Q ss_pred ----C--CceeEEec--c---chhccccCCCcEEEEe-ecCCcEEEEEcC----CCCcccCCCchhhHHHHHHHHhhcC
Q 007779 163 ----E--GERRAMNT--F---WPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGNDPREMRLVGALREVLAG 225 (590)
Q Consensus 163 ----~--~~~~~~~r--y---Hsl~v~~~p~~l~v~a-~~~g~im~~~h~----~gvQfHPEs~~~m~L~~~L~kl~~G 225 (590)
. +..|.+-. | |...|..+ ++++++| +++..+.+++.+ +|||||||=....--..+.+.+..|
T Consensus 188 ~pL~~g~~~~f~vphsr~~e~~~~~v~~~-pga~vLA~S~~~~~q~~~~~~~~~~~vQgHPEyd~~~l~~ey~rd~~~g 265 (312)
T 2h2w_A 188 SVLFRGHDDFFWAPHSRYTEVKKEDIDKV-PELEILAESDEAGVYVVANKSERQIFVTGHPEYDRYTLRDEYYRDIGRN 265 (312)
T ss_dssp CGGGTTCCSEEEEEEEEEEECCHHHHTTC-C-CEEEEEETTTEEEEEECSSSSEEEECSCTTCCTTHHHHHHHHHHHTT
T ss_pred CccccCCCCceEeeEEeccccCHHHccCC-CCCEEEEcCCCCcceEEEecCCCEEEEECCCCCCHHHHHHHHHHHHHcc
Confidence 1 23555543 3 33334444 4899999 777778888763 9999999974443333455555555
No 47
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=94.37 E-value=0.052 Score=51.55 Aligned_cols=110 Identities=8% Similarity=0.087 Sum_probs=64.3
Q ss_pred ccccccccccccccccccccccceeEeeccccH-------HHHHHhCCceEEEeCCC---CCccccccC-CCCCcccc--
Q 007779 27 HRRLQASRQFSSTDGNRLIGRRIRLTVKADLDS-------ALIDQLGLKESDIINPA---ISSSYRSSK-LPKPNQTL-- 93 (590)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~---~~~~~~~~~-~~~~~~~~-- 93 (590)
|.+|.+...+.... ..+|+.|++.+.|+. ..|+..|.++.++.-+. ++.+. .. ...++...
T Consensus 8 ~~~~~~~~~~~~~~----~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~--g~~~v~~~~~l~~ 81 (193)
T 1oi4_A 8 HHHLESTSLYKKAG----LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKK--GEASVTIDKSIDE 81 (193)
T ss_dssp CCSCCTTCTTTTTT----CCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTT--SSCEEECCEEGGG
T ss_pred cccccccceehhhc----cCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCC--CCeEEECCCChHH
Confidence 44555544554432 234567777777763 55777899998887653 21110 00 00011110
Q ss_pred --ccCCCeEEECCCCCCCCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 94 --LEAQAKVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 94 --~~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
.+.+|.||+-.|+| +.+..+.....+. |++ +....|+.| |.|.|.|+.+
T Consensus 82 ~~~~~~D~livpGG~~-~~~l~~~~~l~~~-l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 82 VTPAEFDALLLPGGHS-PDYLRGDNRFVTF-TRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp CCGGGCSEEEECCBTH-HHHHTTSHHHHHH-HHHHHHTTCCEEEETTTHHHHHHH
T ss_pred CCcccCCEEEECCCcC-HHHhhhCHHHHHH-HHHHHHcCCEEEEECHHHHHHHHC
Confidence 23579999988865 3311123456777 665 456799999 9999999986
No 48
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=93.90 E-value=0.019 Score=55.80 Aligned_cols=71 Identities=8% Similarity=-0.044 Sum_probs=43.5
Q ss_pred HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhh------HHHHHHHH-hcCCCCc
Q 007779 60 ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFK------VLDTILRS-AKGDLKD 132 (590)
Q Consensus 60 ~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~------~~~~~i~~-~~~~~Pi 132 (590)
+.|+.+|+++.+++-..-+.++. ...+...|+|++ || |+.. .+.. ..+. |++ +...+|+
T Consensus 51 ~a~~~lG~~v~~~~i~~~~~~~~--------~~~l~~ad~I~l-~G-G~~~---~l~~~L~~~gl~~~-l~~~~~~G~p~ 116 (206)
T 3l4e_A 51 KALESLGLLVEELDIATESLGEI--------TTKLRKNDFIYV-TG-GNTF---FLLQELKRTGADKL-ILEEIAAGKLY 116 (206)
T ss_dssp HHHHHTTCEEEECCTTTSCHHHH--------HHHHHHSSEEEE-CC-SCHH---HHHHHHHHHTHHHH-HHHHHHTTCEE
T ss_pred HHHHHcCCeEEEEEecCCChHHH--------HHHHHhCCEEEE-CC-CCHH---HHHHHHHHCChHHH-HHHHHHcCCeE
Confidence 67889999988874111111100 011444588998 67 7764 2221 3455 444 4456999
Q ss_pred cc-ccchHHHHhH
Q 007779 133 EE-EVSKAQLGAF 144 (590)
Q Consensus 133 lG-CLGhQ~i~~~ 144 (590)
+| |+|.|.++..
T Consensus 117 ~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 117 IGESAGAVITSPN 129 (206)
T ss_dssp EEETHHHHTTSSB
T ss_pred EEECHHHHHhccc
Confidence 99 9999999763
No 49
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=91.33 E-value=0.12 Score=62.84 Aligned_cols=87 Identities=11% Similarity=0.016 Sum_probs=52.2
Q ss_pred cccceeEeec----cccH---HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhh--
Q 007779 46 GRRIRLTVKA----DLDS---ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAF-- 116 (590)
Q Consensus 46 ~~~~~~~~~~----~~d~---~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g-- 116 (590)
+.|+++.+++ |.|- +-|+..|.++.++....+... + ..++.+|+|||..|-...+.. .+|
T Consensus 1045 ~~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~--------~--~~l~~~d~lvlPGGfSygD~l-~~g~~ 1113 (1303)
T 3ugj_A 1045 GARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGG--------R--IGLGNFHALVACGGFSYGDVL-GAGEG 1113 (1303)
T ss_dssp TCCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTT--------S--CCGGGCSEEEECCSCGGGGTT-STTHH
T ss_pred CCCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccC--------c--ccHhhCCEEEECCCCcchhhh-ccchh
Confidence 3466777776 4433 567888998886642111000 0 015567999998885433211 111
Q ss_pred ---------hHHHHHHHH-h-cCCCCccc-ccchHHHHhH
Q 007779 117 ---------KVLDTILRS-A-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 117 ---------~~~~~~i~~-~-~~~~PilG-CLGhQ~i~~~ 144 (590)
.+.+. +++ + ....|+|| |+|+|.|.+.
T Consensus 1114 ~a~~~l~~~~l~~~-l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1114 WAKSILFNHRVRDE-FETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp HHHHHHTSHHHHHH-HHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred HHHHHHhchhHHHH-HHHHHHhCCCcEEEECHHHHHHHHh
Confidence 23344 554 3 35799999 9999999987
No 50
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=91.06 E-value=0.05 Score=53.45 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=44.3
Q ss_pred cccH--HHHHHhCCceEEEeCCCCCccccccCCCCCccccccCCCeEEECCCCCCCCCchhhhh------HHHHHHHH-h
Q 007779 56 DLDS--ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFK------VLDTILRS-A 126 (590)
Q Consensus 56 ~~d~--~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~P~~~~~~g~------~~~~~i~~-~ 126 (590)
+++| +.|+.+|+++.+++.-+-..+. ++..|+|+++. |+.. .+.. ..+. |++ +
T Consensus 49 ~~~~~~~al~~lG~~~~~v~~~~d~~~~------------l~~ad~I~lpG--G~~~---~~~~~l~~~gl~~~-l~~~~ 110 (229)
T 1fy2_A 49 YTDKTAEVLAPLGVNVTGIHRVADPLAA------------IEKAEIIIVGG--GNTF---QLLKESRERGLLAP-MADRV 110 (229)
T ss_dssp HHHHHHHHHGGGTCEEEETTSSSCHHHH------------HHHCSEEEECC--SCHH---HHHHHHHHTTCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeccccHHHH------------HhcCCEEEECC--CcHH---HHHHHHHHCChHHH-HHHHH
Confidence 3444 6788899988877631000011 33447777755 6654 3222 3445 443 4
Q ss_pred cCCCCccc-ccchHHHHhHh
Q 007779 127 KGDLKDEE-EVSKAQLGAFF 145 (590)
Q Consensus 127 ~~~~PilG-CLGhQ~i~~~~ 145 (590)
...+|++| |+|.|.++...
T Consensus 111 ~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 111 KRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HTTCEEEEETHHHHHTSSBS
T ss_pred HcCCEEEEECHHHHhhcccc
Confidence 45699999 99999998854
No 51
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=89.60 E-value=0.29 Score=44.88 Aligned_cols=97 Identities=8% Similarity=-0.084 Sum_probs=57.2
Q ss_pred cccceeEeeccccH-------HHHHHhCCceEEEeCCCCCccccccCCCCCcccc----ccCCCeEEECCCCCCCCCchh
Q 007779 46 GRRIRLTVKADLDS-------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTL----LEAQAKVCTGPTQTRPLREDE 114 (590)
Q Consensus 46 ~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~----~~~~~~ivlspGPg~P~~~~~ 114 (590)
++|+.+++.+.|+. ..|++.|.++.++--+.-.+.........++... .+.+|.|++-.|+| |....+
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~~~~ 80 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA-PEIVRL 80 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH-HHHHTT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC-HHHhcc
Confidence 45778888888887 5667778888877544211100000000011111 12479999977775 321112
Q ss_pred hhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 115 AFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 115 ~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
...+.+. +++ +....||.+ |-|.+.|+.+
T Consensus 81 ~~~l~~~-l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 81 NEKAVMI-TRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp CHHHHHH-HHHHHHTTCCEEEETTTHHHHHHT
T ss_pred CHHHHHH-HHHHHHCCCEEEEECHhHHHHHHC
Confidence 3446777 655 455799999 9999999875
No 52
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=85.88 E-value=0.64 Score=43.83 Aligned_cols=95 Identities=13% Similarity=0.062 Sum_probs=59.1
Q ss_pred ccceeEeeccccH-------HHHHHhCCceEEEeCC---CCCccccccCCCCCcccc--c---cCCCeEEECCCCCCCCC
Q 007779 47 RRIRLTVKADLDS-------ALIDQLGLKESDIINP---AISSSYRSSKLPKPNQTL--L---EAQAKVCTGPTQTRPLR 111 (590)
Q Consensus 47 ~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd---~~~~~~~~~~~~~~~~~~--~---~~~~~ivlspGPg~P~~ 111 (590)
+|+.|++.+.|+. ..|++.|.++.++--+ .+..+. .....++... . +.+|.||+-.|++.+.+
T Consensus 4 ~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~--g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~ 81 (197)
T 2rk3_A 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSR--DVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN 81 (197)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTT--SCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCC--CCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence 4667888888876 5577779988888643 121110 0001121111 2 46799999988754432
Q ss_pred chhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 112 EDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 112 ~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
..+.....+. +++ +....||.+ |-|-+.|+.+
T Consensus 82 l~~~~~~~~~-l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 82 LSESAAVKEI-LKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHCHHHHHH-HHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhhCHHHHHH-HHHHHHcCCEEEEECHHHHHHHHC
Confidence 2233456777 665 445689999 9999999876
No 53
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=85.17 E-value=0.64 Score=43.37 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=56.7
Q ss_pred ccceeEeeccccH-------HHHHHhCCceEEEeCCC--CCccc---cccCCCCCcccc----ccCCCeEEECCCCCCCC
Q 007779 47 RRIRLTVKADLDS-------ALIDQLGLKESDIINPA--ISSSY---RSSKLPKPNQTL----LEAQAKVCTGPTQTRPL 110 (590)
Q Consensus 47 ~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~--~~~~~---~~~~~~~~~~~~----~~~~~~ivlspGPg~P~ 110 (590)
+|+.|++.+.|+. ..|++.|.++.++--+. +.... .......++..+ .+.+|.||+-.|++.+.
T Consensus 10 ~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~ 89 (190)
T 2vrn_A 10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPD 89 (190)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhHH
Confidence 4667777787764 45777788888776542 21100 000000111111 13579999998875443
Q ss_pred CchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 111 REDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 111 ~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
+..+.....+. +++ +....||.+ |-|-+.|+.+
T Consensus 90 ~~~~~~~l~~~-l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 90 KLRLEEGAMKF-VRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHTTCHHHHHH-HHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred HHhhCHHHHHH-HHHHHHcCCEEEEECHhHHHHHhC
Confidence 21123456777 665 455689999 9999999985
No 54
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=78.90 E-value=0.87 Score=43.37 Aligned_cols=96 Identities=6% Similarity=-0.039 Sum_probs=57.1
Q ss_pred cceeEeeccccH-------HHHHHhCCceEEEeCCCC---CccccccCCCCCcccc----ccCCCeEEECCCCCCCCCch
Q 007779 48 RIRLTVKADLDS-------ALIDQLGLKESDIINPAI---SSSYRSSKLPKPNQTL----LEAQAKVCTGPTQTRPLRED 113 (590)
Q Consensus 48 ~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~~---~~~~~~~~~~~~~~~~----~~~~~~ivlspGPg~P~~~~ 113 (590)
|+.|++.+.|+. ..|++.|.++.++--+.- .+.........++... .+.+|.||+-.|++.+.+..
T Consensus 4 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~ 83 (205)
T 2ab0_A 4 SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFR 83 (205)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHH
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhc
Confidence 556777777765 457777888888754421 1110000000111111 23579999999876554222
Q ss_pred hhhhHHHHHHHH-hcCCCCccc-ccch-HHHHhH
Q 007779 114 EAFKVLDTILRS-AKGDLKDEE-EVSK-AQLGAF 144 (590)
Q Consensus 114 ~~g~~~~~~i~~-~~~~~PilG-CLGh-Q~i~~~ 144 (590)
+...+.+. +++ +....||.+ |-|- +.|+.+
T Consensus 84 ~~~~l~~~-l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 84 DSTLLVET-VKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HCHHHHHH-HHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred cCHHHHHH-HHHHHHcCCEEEEECHhHHHHHHHC
Confidence 33456777 665 445689999 9999 888864
No 55
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=77.81 E-value=4.7 Score=46.08 Aligned_cols=113 Identities=8% Similarity=-0.045 Sum_probs=67.5
Q ss_pred ccccccccccccccccccccceeEeeccccH-------HHHHHhCCceEEEeCCCCCccccccCCCCCcccc----ccCC
Q 007779 29 RLQASRQFSSTDGNRLIGRRIRLTVKADLDS-------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTL----LEAQ 97 (590)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~----~~~~ 97 (590)
.-.|.|+.-......--|||+.|++.|.|+- ..|++-|++|.++--+.=.+.-.......++.++ ...|
T Consensus 583 ~~~~~ls~~~~~~~ti~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~f 662 (753)
T 3ttv_A 583 KKDPSLSLYAIPDGDVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTV 662 (753)
T ss_dssp SCCGGGCSSSSCCCCCTTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGC
T ss_pred CCCccccccCCCCCCCCCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCC
Confidence 3344444433322345678889999999997 5677779999888543211110000000111111 1237
Q ss_pred CeEEECCCCCCCCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 98 AKVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 98 ~~ivlspGPg~P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
|+|||-.| .|.....-+.++++ +++ +...+||-. |=|-++|+.+
T Consensus 663 DALVVPGG--g~~~Lr~d~~vl~~-Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 663 DAVIVPCG--NIADIADNGDANYY-LMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp SEEEECCS--CGGGTTTCHHHHHH-HHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred CEEEECCC--ChHHhhhCHHHHHH-HHHHHhcCCeEEEECchHHHHHHc
Confidence 99999666 45444445678888 666 455688888 9999998876
No 56
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=76.45 E-value=2.1 Score=40.02 Aligned_cols=95 Identities=15% Similarity=0.057 Sum_probs=56.5
Q ss_pred ccceeEeeccccH-------HHHHHhCCceEEEeCCC---CCccccccCCCCCcccc----ccCCCeEEECCCCCCCCCc
Q 007779 47 RRIRLTVKADLDS-------ALIDQLGLKESDIINPA---ISSSYRSSKLPKPNQTL----LEAQAKVCTGPTQTRPLRE 112 (590)
Q Consensus 47 ~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~---~~~~~~~~~~~~~~~~~----~~~~~~ivlspGPg~P~~~ 112 (590)
||+-+++.+.|+. ..|++.|.++.++--+. ++.+. .....++..+ .+.||.|++-.|.+.+.+.
T Consensus 6 kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~--g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~ 83 (190)
T 4e08_A 6 KSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSR--DVQILPDTSLAQVASDKFDVVVLPGGLGGSNAM 83 (190)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTT--SCEEECSEETGGGTTCCCSEEEECCCHHHHHHH
T ss_pred cEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCC--CcEEECCCCHHHCCcccCCEEEECCCChHHHHh
Confidence 4667788888887 66777799888875432 21110 0000111111 1247999997773322212
Q ss_pred hhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 113 DEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 113 ~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
.+...+.+. +++ +....||.+ |-|-+.|+.+
T Consensus 84 ~~~~~~~~~-l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 84 GESSLVGDL-LRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHCHHHHHH-HHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhCHHHHHH-HHHHHHCCCEEEEECHHHHHHHHC
Confidence 223456777 665 455689999 9999999874
No 57
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=75.88 E-value=2.7 Score=39.35 Aligned_cols=93 Identities=3% Similarity=-0.088 Sum_probs=54.8
Q ss_pred eeEeeccccH-------HHHHHhCCceEEEeCCCCCccccccCCCCCcccc----ccCCCeEEECCCCCCCCCchhhhhH
Q 007779 50 RLTVKADLDS-------ALIDQLGLKESDIINPAISSSYRSSKLPKPNQTL----LEAQAKVCTGPTQTRPLREDEAFKV 118 (590)
Q Consensus 50 ~~~~~~~~d~-------~~~~~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~----~~~~~~ivlspGPg~P~~~~~~g~~ 118 (590)
-|++-+.|+- ..|++-|.+|+++-.+.=.+.........++..+ .+.||.|++-.|+|. .+..+-..+
T Consensus 12 ~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~-~~l~~~~~~ 90 (177)
T 4hcj_A 12 YVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGC-ITLWDDWRT 90 (177)
T ss_dssp EECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGG-GGGTTCHHH
T ss_pred EEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccH-HHHhhCHHH
Confidence 4445577765 6788889999887544211110000000111111 235799999888763 322233457
Q ss_pred HHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 119 LDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 119 ~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
.++ ++++ ....||-+ |-|-+.|+.+
T Consensus 91 ~~~-l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 91 QGL-AKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp HHH-HHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHH-HHHHHHhCCEEEEecccHHHHHHC
Confidence 777 6664 45688888 9999988764
No 58
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=72.70 E-value=15 Score=41.68 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=61.2
Q ss_pred ccccccceeEeecc-ccH-------HHHHHhCCceEEEeCCC---CCccccccCCCCCccccccCCCeEEECCCC-CC--
Q 007779 43 RLIGRRIRLTVKAD-LDS-------ALIDQLGLKESDIINPA---ISSSYRSSKLPKPNQTLLEAQAKVCTGPTQ-TR-- 108 (590)
Q Consensus 43 ~~~~~~~~~~~~~~-~d~-------~~~~~lg~~~~v~rnd~---~~~~~~~~~~~~~~~~~~~~~~~ivlspGP-g~-- 108 (590)
.--|||+.|++-|- |+- ..|++-|+.|.++--.. ++... .. .-...||+|||-.|+ +.
T Consensus 534 ~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~-----~~---~~s~~fDAVvlPGG~~~~~~ 605 (688)
T 3ej6_A 534 TIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTY-----SA---ADATAFDAVVVAEGAERVFS 605 (688)
T ss_dssp CCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEET-----TT---CCGGGCSEEEECTTCCTTTS
T ss_pred CccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCc-----cc---CChhcCcEEEECCCcccccc
Confidence 35578888888887 773 66778899999984321 11111 00 002357999996664 32
Q ss_pred ----CCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 109 ----PLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 109 ----P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
|......+.++++ +++ +...+||-. |=|-++|..+
T Consensus 606 ~~~~~d~Lr~~~~a~~f-V~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 606 GKGAMSPLFPAGRPSQI-LTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTTTCCTTSCTTHHHHH-HHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred cccchhhhccCHHHHHH-HHHHHHcCCEEEEeCccHHHHHHc
Confidence 4444455678888 655 556689988 9999998865
No 59
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=71.23 E-value=5.5 Score=36.41 Aligned_cols=95 Identities=2% Similarity=-0.054 Sum_probs=53.1
Q ss_pred ccceeEeec---c---ccH-HHHHHhCCceEEEeCCC---CCccccccCCCCCcccc------ccCCCeEEECCC--CCC
Q 007779 47 RRIRLTVKA---D---LDS-ALIDQLGLKESDIINPA---ISSSYRSSKLPKPNQTL------LEAQAKVCTGPT--QTR 108 (590)
Q Consensus 47 ~~~~~~~~~---~---~d~-~~~~~lg~~~~v~rnd~---~~~~~~~~~~~~~~~~~------~~~~~~ivlspG--Pg~ 108 (590)
+|+.+++.+ . |+. .++.+-|.++.++--+. ++.+. .....++... .+.+|.||+-.| +..
T Consensus 3 ~~v~ill~~~~~g~~~~~~~e~~~~~~~~v~~vs~~~~~~v~~~~--g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~ 80 (175)
T 3cne_A 3 KKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNS--GMVLIVDDVIANLKGHEDEFDALVFSCGDAVPV 80 (175)
T ss_dssp CEEEEEECSSBCHHHHHHHHHHHHHTTCEEEEEESSSSSEEEBTT--SCEEECSEEGGGGTTCGGGCSEEEEECCTTGGG
T ss_pred cEEEEEEecCcCCCccchhhheeeeCCCEEEEEECCCCCceecCC--CeEEEeccCHHHhccCcccCCEEEECCCcCccc
Confidence 355666666 5 444 33436678888775541 21110 0000111111 245799999887 533
Q ss_pred CCCch---hhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 109 PLRED---EAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 109 P~~~~---~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
|.... +.....+. ++++ ....||.+ |-|-+.|+.+
T Consensus 81 ~~~l~~~~~~~~~~~~-l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 81 FQQYANQPYNVDLMEV-IKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGGCTTCHHHHHHHHH-HHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHHhhcccCHHHHHH-HHHHHHCCCEEEEECHHHHHHHHC
Confidence 43222 33456777 6664 45689999 9999999876
No 60
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=69.56 E-value=4.9 Score=41.99 Aligned_cols=99 Identities=10% Similarity=0.047 Sum_probs=57.9
Q ss_pred cccccceeEeeccccH-------HHHHHhCCceEEEeCCCCC----------------ccccccCCCCCcccc----ccC
Q 007779 44 LIGRRIRLTVKADLDS-------ALIDQLGLKESDIINPAIS----------------SSYRSSKLPKPNQTL----LEA 96 (590)
Q Consensus 44 ~~~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~~~----------------~~~~~~~~~~~~~~~----~~~ 96 (590)
..++|+.|++.|.|+. ..|++.|.++.++--+.-. ..........+...+ .+.
T Consensus 203 ~~~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 282 (396)
T 3uk7_A 203 GANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSS 282 (396)
T ss_dssp CCCCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred hccceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCccc
Confidence 3445678888888876 5677779888877433100 000000000011111 235
Q ss_pred CCeEEECCCCCCCCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 97 QAKVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 97 ~~~ivlspGPg~P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
+|.||+-.|+| +.+..+...+.+. +++ +....||.+ |-|-+.|+.+
T Consensus 283 ~D~livpGg~~-~~~~~~~~~~~~~-l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 283 YDALVIPGGRA-PEYLALNEHVLNI-VKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp CSEEEECCBSH-HHHHTTCHHHHHH-HHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred CCEEEECCCcc-hhhhccCHHHHHH-HHHHHHCCCEEEEEchHHHHHHHc
Confidence 79999977765 3321223456777 655 455689999 9999999876
No 61
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=68.43 E-value=6.4 Score=38.00 Aligned_cols=49 Identities=4% Similarity=-0.158 Sum_probs=34.2
Q ss_pred cCCCeEEECCCCCCCCCch----------hhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLRED----------EAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~----------~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+.||.||+-.|.|.+.+.. ....+.++ ++++ ....||.+ |-|-+.|+.+
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~gk~vaaIC~G~~~La~a 149 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL-AQAMHQAGKPLGFMCIAPAMLPKI 149 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHH-HHHHHHTTCCEEEETTGGGGHHHH
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHH-HHHHHHcCCEEEEECHHHHHHHHH
Confidence 3589999988876521111 12346677 6664 45689999 9999999988
No 62
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=66.00 E-value=3 Score=39.70 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=57.9
Q ss_pred ccccceeEeeccccH-------HHHHHhCCceEEEeCCC-CCccccccCCCCCcccc----ccCCCeEEECCCCCCCCCc
Q 007779 45 IGRRIRLTVKADLDS-------ALIDQLGLKESDIINPA-ISSSYRSSKLPKPNQTL----LEAQAKVCTGPTQTRPLRE 112 (590)
Q Consensus 45 ~~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~-~~~~~~~~~~~~~~~~~----~~~~~~ivlspGPg~P~~~ 112 (590)
..+|+.+++.+.|+. ..|+..|.++.++--+. -.+.........++..+ .+.+|.||+-.|.+.+.+.
T Consensus 8 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l 87 (208)
T 3ot1_A 8 MSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAF 87 (208)
T ss_dssp -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHH
T ss_pred cCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHH
Confidence 345778888888886 56777788888876552 11110000000111111 2357999997776544322
Q ss_pred hhhhhHHHHHHHH-hcCCCCccc-ccch-HHHHh
Q 007779 113 DEAFKVLDTILRS-AKGDLKDEE-EVSK-AQLGA 143 (590)
Q Consensus 113 ~~~g~~~~~~i~~-~~~~~PilG-CLGh-Q~i~~ 143 (590)
.+...+.+. +++ +....||.+ |-|- ..|+.
T Consensus 88 ~~~~~l~~~-l~~~~~~gk~i~aiC~G~a~~La~ 120 (208)
T 3ot1_A 88 ADSTALLAL-IDAFSQQGKLVAAICATPALVFAK 120 (208)
T ss_dssp HTCHHHHHH-HHHHHHTTCEEEEETTHHHHTTTT
T ss_pred hhCHHHHHH-HHHHHHcCCEEEEEChhHHHHHHH
Confidence 233456777 665 455689999 9998 77776
No 63
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=65.84 E-value=6.5 Score=41.03 Aligned_cols=97 Identities=10% Similarity=0.062 Sum_probs=57.6
Q ss_pred cccceeEeeccccH-------HHHHHhCCceEEEeCCCC--Cc--------------cccccCCCCCcccc----ccCCC
Q 007779 46 GRRIRLTVKADLDS-------ALIDQLGLKESDIINPAI--SS--------------SYRSSKLPKPNQTL----LEAQA 98 (590)
Q Consensus 46 ~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~~--~~--------------~~~~~~~~~~~~~~----~~~~~ 98 (590)
++|+.|++.|.|+- ..|++.|.++.++--+.- .. .........+.... .+.||
T Consensus 12 ~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 91 (396)
T 3uk7_A 12 SRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYD 91 (396)
T ss_dssp CCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred CCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCC
Confidence 35778888888876 567777998888854421 00 00000000011111 23579
Q ss_pred eEEECCCCCCCCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 99 KVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 99 ~ivlspGPg~P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
.|++-.|.| +.+..+...+.+. +++ +....||.+ |-|-+.|+.+
T Consensus 92 ~livpGG~~-~~~~~~~~~~~~~-l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 92 GLVIPGGRA-PEYLALTASVVEL-VKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp EEEECCBSH-HHHHTTCHHHHHH-HHHHHHTTCCEEEETTTHHHHHHT
T ss_pred EEEECCCcc-hhhcccCHHHHHH-HHHHHHcCCEEEEECchHHHHHhc
Confidence 999977765 3311223456777 555 455689999 9999999876
No 64
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=64.52 E-value=14 Score=41.90 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=60.6
Q ss_pred cccccceeEee--ccccH-------HHHHHhCCceEEEeCCC---CCccccccCCCCCccccccCCCeEEECCCCCC---
Q 007779 44 LIGRRIRLTVK--ADLDS-------ALIDQLGLKESDIINPA---ISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTR--- 108 (590)
Q Consensus 44 ~~~~~~~~~~~--~~~d~-------~~~~~lg~~~~v~rnd~---~~~~~~~~~~~~~~~~~~~~~~~ivlspGPg~--- 108 (590)
--|+|+.|++. +-|+- ..|++-|++|+|+--.. ++..+ .. .-...||+|||-.|...
T Consensus 527 l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~-----~~---~~s~~fDAVvlPGG~~g~~~ 598 (688)
T 2iuf_A 527 LDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETY-----SA---SDAVQFDAVVVADGAEGLFG 598 (688)
T ss_dssp CTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEES-----TT---CCGGGCSEEEECTTCGGGCC
T ss_pred CCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccch-----hc---CCccccCeEEecCCCccccc
Confidence 34567777777 66765 55777799999885431 11111 00 00235799999999544
Q ss_pred -------------CCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 109 -------------PLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 109 -------------P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
|......+..+++ ++. +...+||-. |=|-++|..+
T Consensus 599 ~~~~~~~~~~~~~~~~L~~~~~~~~~-v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 599 ADSFTVEPSAGSGASTLYPAGRPLNI-LLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp TTTTTCCCCTTSCCCSSSCTTHHHHH-HHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred ccccccccccccchhhcccChHHHHH-HHHHHHcCCEEEEECchHHHHHHc
Confidence 5555566778888 555 555789888 9999988765
No 65
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=63.23 E-value=16 Score=34.61 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=54.2
Q ss_pred ccceeEeeccccH-------HHHH--------HhCCceEEEeCCCCCccccccCCCCCcccc--c--cCCCeEEECCCCC
Q 007779 47 RRIRLTVKADLDS-------ALID--------QLGLKESDIINPAISSSYRSSKLPKPNQTL--L--EAQAKVCTGPTQT 107 (590)
Q Consensus 47 ~~~~~~~~~~~d~-------~~~~--------~lg~~~~v~rnd~~~~~~~~~~~~~~~~~~--~--~~~~~ivlspGPg 107 (590)
+|+.+++.+.|+. ..|+ +-+.++.++--+.=.+.-.......++... . +.+|.||+-.|++
T Consensus 6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~ 85 (212)
T 3efe_A 6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTT 85 (212)
T ss_dssp CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSC
T ss_pred cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCc
Confidence 3567777777765 4455 446677766544211110000001111111 2 2579999988876
Q ss_pred CCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 108 RPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 108 ~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
... .+...+++. ++++ ....+|.+ |-|-..|+.+
T Consensus 86 ~~~--~~~~~l~~~-l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 86 WSE--EIHQPILER-IGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp TTS--GGGHHHHHH-HHHHHHHTCEEEEETHHHHHHHHT
T ss_pred ccc--ccCHHHHHH-HHHHHHCCCEEEEEcHHHHHHHHc
Confidence 432 234457777 6654 45689999 9999998865
No 66
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=62.58 E-value=9 Score=43.73 Aligned_cols=100 Identities=10% Similarity=0.007 Sum_probs=61.2
Q ss_pred ccccceeEeeccccH-------HHHHHhCCceEEEeCCC--CCccccccCCCCCcccc----ccCCCeEEECCCCCCCCC
Q 007779 45 IGRRIRLTVKADLDS-------ALIDQLGLKESDIINPA--ISSSYRSSKLPKPNQTL----LEAQAKVCTGPTQTRPLR 111 (590)
Q Consensus 45 ~~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~--~~~~~~~~~~~~~~~~~----~~~~~~ivlspGPg~P~~ 111 (590)
.++++.|++.+.++. ..|+..|+++.++--+. +..+. .....+..++ .+.+|+|||-.|.+.+.+
T Consensus 533 ~~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~--G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~ 610 (715)
T 1sy7_A 533 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAAN--GSTVQPHHHLEGFRSTMVDAIFIPGGAKAAET 610 (715)
T ss_dssp TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTT--SCEECCSEETTTCCGGGSSEEEECCCHHHHHH
T ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCC--CceEecccccccCCcccCCEEEEcCCcccHhh
Confidence 356778888888876 45666788888875442 21110 0000111111 224799999888544432
Q ss_pred chhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhHhCc
Q 007779 112 EDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFSA 147 (590)
Q Consensus 112 ~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~~G~ 147 (590)
......++++ |++ +....||-+ |-|-.+|+.++|-
T Consensus 611 l~~~~~l~~~-Lr~~~~~gK~IaAIC~G~~lLA~AlGL 647 (715)
T 1sy7_A 611 LSKNGRALHW-IREAFGHLKAIGATGEAVDLVAKAIAL 647 (715)
T ss_dssp HHTCHHHHHH-HHHHHHTTCEEEEETTHHHHHHHHHCC
T ss_pred hccCHHHHHH-HHHHHhCCCEEEEECHHHHHHHHccCc
Confidence 2223457777 665 455688888 9999999998764
No 67
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=62.22 E-value=10 Score=36.05 Aligned_cols=91 Identities=8% Similarity=-0.007 Sum_probs=51.7
Q ss_pred cceeEeeccccH-------HHHHHh-CCceEEEeCCC-CCccccccCCCCCcccc---ccCCCeEEECCCCCCCCCchhh
Q 007779 48 RIRLTVKADLDS-------ALIDQL-GLKESDIINPA-ISSSYRSSKLPKPNQTL---LEAQAKVCTGPTQTRPLREDEA 115 (590)
Q Consensus 48 ~~~~~~~~~~d~-------~~~~~l-g~~~~v~rnd~-~~~~~~~~~~~~~~~~~---~~~~~~ivlspGPg~P~~~~~~ 115 (590)
|+.+++.+.|+. +.|++. |.++.++--+. +..+ ......++... .+.+|.|++-.|+|. .. +.
T Consensus 5 kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~--~G~~v~~d~~l~~~~~~~D~livpGG~~~-~~--~~ 79 (206)
T 3f5d_A 5 KALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSI--GGFKTSVDYIIGLEPANFNLLVMIGGDSW-SN--DN 79 (206)
T ss_dssp EEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBT--TSCEEECSEETTSSCSCCSEEEECCBSCC-CC--CC
T ss_pred EEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEec--CCcEEecCcChhhCCcCCCEEEEcCCCCh-hh--cC
Confidence 455666666654 555555 66776664332 1110 00000111111 125799999888753 32 34
Q ss_pred hhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 116 FKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 116 g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
..+++. ++++ ....||.+ |-|-+.|+.+
T Consensus 80 ~~l~~~-l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 80 KKLLHF-VKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HHHHHH-HHHHHHTTCCEEEETHHHHHHHHT
T ss_pred HHHHHH-HHHHHHcCCEEEEECHHHHHHHHc
Confidence 457777 6654 55689999 9999999875
No 68
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=54.65 E-value=9.7 Score=35.23 Aligned_cols=46 Identities=9% Similarity=-0.041 Sum_probs=32.3
Q ss_pred CCCeEEECCCCCCCCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 96 AQAKVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 96 ~~~~ivlspGPg~P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
.+|.||+-.|++... .+...+++. +++ +....||.+ |-|-+.|+.+
T Consensus 63 ~~D~livpGG~~~~~--~~~~~l~~~-l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 63 DIDALVIPGGLSWEK--GTAADLGGL-VKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp TCSEEEECCBSHHHH--TCCCCCHHH-HHHHHHTTCEEEEETHHHHHHHHT
T ss_pred cCCEEEECCCCcccc--cccHHHHHH-HHHHHHCCCEEEEECHHHHHHHHC
Confidence 579999988875311 123446777 665 445689999 9999999865
No 69
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=52.97 E-value=20 Score=33.78 Aligned_cols=46 Identities=11% Similarity=-0.049 Sum_probs=34.2
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+.+|.||+-.|++.+.. . ..+++. ++++ ....++.+ |-|-..|+++
T Consensus 70 ~~~D~livpGG~~~~~~--~-~~l~~~-l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 70 KELDLLVVCGGLRTPLK--Y-PELDRL-LNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TTCSEEEEECCTTCCSC--C-TTHHHH-HHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CCCCEEEEeCCCchhhc--c-HHHHHH-HHHHHhhCCEEEEECHHHHHHHHc
Confidence 35799999888776542 2 567787 6664 44688888 9999999875
No 70
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=52.10 E-value=27 Score=34.13 Aligned_cols=50 Identities=8% Similarity=-0.089 Sum_probs=34.3
Q ss_pred CCCeEEECCCCCCC----C-------CchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhHhC
Q 007779 96 AQAKVCTGPTQTRP----L-------REDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAFFS 146 (590)
Q Consensus 96 ~~~~ivlspGPg~P----~-------~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~~G 146 (590)
.||.|||-.|.|.. . .......+.++ +++ +....||.+ |-|-+.|+.+-|
T Consensus 107 ~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~-lr~~~~~gk~IaaIC~G~~~La~ag~ 169 (242)
T 3l3b_A 107 EFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNA-VREFYNAKKPIGAVCISPAVVVALLK 169 (242)
T ss_dssp GCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHH-HHHHHHTTCCEEEETTHHHHHHHHHT
T ss_pred cCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHH-HHHHHHcCCEEEEECHHHHHHHHhCc
Confidence 57999998776531 1 01122456777 665 445689999 999999998763
No 71
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=52.03 E-value=1.6e+02 Score=29.29 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=85.8
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHH----HHHHhcCCccCCCCCCCCHHHHHHHHHHHHhc--------CCCHHH-H-HHHH
Q 007779 213 MRLVGALREVLAGGHLGYEEVQG----VLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--------RETDRE-L-KAYC 278 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~----a~~~Il~~~~~~~~g~~sd~qigAFL~alr~K--------gET~eE-l-ag~~ 278 (590)
-+|.+.++++.....++.+...+ +-..++ ..++...-.-.|+-.++-+ +.++.+ + ....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-------~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (297)
T 1j8m_F 5 DNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLI-------SADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVY 77 (297)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHH
Confidence 34788898888777899855444 444555 5778887777887776642 234433 2 2233
Q ss_pred HhhhhcCC----C-CCCC-CCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHH----HH
Q 007779 279 LAFDDELG----P-PPVA-DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQM----LK 348 (590)
Q Consensus 279 ~A~~~~~~----~-~~~~-~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDv----Le 348 (590)
+.+..... . +... ....+-++|.+|.|+.|+-.. .|..++..|-+|..-+.+... .++ .+. .+
T Consensus 78 ~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~---la~~~~~~g~~v~l~~~D~~r--~~a--~~ql~~~~~ 150 (297)
T 1j8m_F 78 DELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGK---LAYFYKKKGFKVGLVGADVYR--PAA--LEQLQQLGQ 150 (297)
T ss_dssp HHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHH---HHHHHHHTTCCEEEEECCCSS--SHH--HHHHHHHHH
T ss_pred HHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHH---HHHHHHHCCCeEEEEecCCCC--HHH--HHHHHHHhc
Confidence 33333222 1 1111 123566789999998764332 233445678899988766422 222 222 34
Q ss_pred hcCCCC-----CCCHHHH-HHHHHh---ccCceEeecchhhCh
Q 007779 349 FMGAST-----NLSVLQA-KELLED---EEIGFAYVSLREARP 382 (590)
Q Consensus 349 aLGi~i-----~~s~e~a-~~~Le~---~g~gf~fl~a~~~~P 382 (590)
..|+++ ..+|.++ .+.++. .+.-+++++.|-.+.
T Consensus 151 ~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 151 QIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCC
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 456653 2345443 233332 345677777765444
No 72
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=48.87 E-value=19 Score=37.64 Aligned_cols=95 Identities=6% Similarity=0.007 Sum_probs=56.9
Q ss_pred cccceeEeeccccH-------HHHHHhCCceEEEeCCC---CCccccccC-CCCCcccc--c--cCCCeEEECCCCCCCC
Q 007779 46 GRRIRLTVKADLDS-------ALIDQLGLKESDIINPA---ISSSYRSSK-LPKPNQTL--L--EAQAKVCTGPTQTRPL 110 (590)
Q Consensus 46 ~~~~~~~~~~~~d~-------~~~~~lg~~~~v~rnd~---~~~~~~~~~-~~~~~~~~--~--~~~~~ivlspGPg~P~ 110 (590)
.+|+.|++.+.|+. ..|+..|.++.++--+. +..+ ... ...++..+ + +.+|.||+-.|+| |.
T Consensus 10 mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss--~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g-~~ 86 (365)
T 3fse_A 10 KKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGK--RGRLSTQADGTTTEAIASEFDAVVIPGGMA-PD 86 (365)
T ss_dssp -CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECT--TSCCEECCSEETTTCCGGGCSEEEECCBTH-HH
T ss_pred ceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecC--CCceEEeCCCCHhhCCCcCCCEEEEECCcc-hh
Confidence 34678888888876 56777788888875442 2111 000 01111111 1 2479999988875 32
Q ss_pred CchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 111 REDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 111 ~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
+..+...+.+. +++ +....||-+ |-|-..|+.+
T Consensus 87 ~l~~~~~l~~~-Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 87 KMRRNPNTVRF-VQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp HHTTCHHHHHH-HHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hccCCHHHHHH-HHHHHHCCCEEEEECHHHHHHHHc
Confidence 11123456777 665 445688989 9999999865
No 73
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=46.53 E-value=20 Score=36.38 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=87.9
Q ss_pred hcCCCHHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCC---CCCCCC
Q 007779 266 MNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMP---PKGGVT 342 (590)
Q Consensus 266 ~KgET~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vt---sk~Gst 342 (590)
.=|.+.+||..++ .+...+....|.+ ..++.|.+|..|. +. .++++..+|++|.-.|+=+== +--=|
T Consensus 71 ~VGL~~~eLe~la---~~~~~K~SrRDl~--~~~a~g~~GaTTV--aa--Tm~lA~~AGI~VFaTGGiGGVHRgt~DIS- 140 (297)
T 1vkm_A 71 VAGMSEEELEAMM---REGADKVGTREIP--IVVAEGKNAATTV--SA--TIFLSRRIGIEVVVTGGTGGVHPGRVDVS- 140 (297)
T ss_dssp EESCCHHHHHHHH---HHCCEEECGGGHH--HHHHHTCCEEECH--HH--HHHHHHHHTCCEEECSCBCCBCTTSSCBC-
T ss_pred EECCCHHHHHHHh---cCCCccccHhhHH--HHHhCCCCchhhH--HH--HHHHHHHcCCcEEEecccccccCCCcccc-
Confidence 3578999999887 2222222221211 2356788886652 22 345667789999998753211 22234
Q ss_pred HHHHHHh---------cCCCCCCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCCCCCcchhhhhhhhcc
Q 007779 343 EEQMLKF---------MGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQ 413 (590)
Q Consensus 343 ~aDvLea---------LGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~np~k~~~~lnP~ 413 (590)
+|+-|- -|++--++....-+.||..|+..+ -|.....|+++. | .-|++.| +
T Consensus 141 -aDL~eL~rTpV~VVcaG~KsILDi~~TLE~LET~GV~Vv-gy~t~~fPaF~t----r-~Sg~~~p--~----------- 200 (297)
T 1vkm_A 141 -QDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLV-GFRTNEFPLFFS----R-KSGRRVP--R----------- 200 (297)
T ss_dssp -HHHHHHTTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEE-EESCSBCCBTTB----S-CCSCBCC--E-----------
T ss_pred -hhHHHhcCCCeEEEecccchhhcchhHHHHHHhCCceEE-EecCCCCCceec----C-CCCCcCC--C-----------
Confidence 788774 377878899999999999776654 335667777653 2 2244333 2
Q ss_pred CCceEEEEecCCcchHHHHHHHHHcCCceEEEEec
Q 007779 414 GREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKG 448 (590)
Q Consensus 414 ~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVV~G 448 (590)
+-+++-...+..+-+.+|.+.+++|--
T Consensus 201 --------~d~~~e~A~~~~~~~~lgl~~g~lvan 227 (297)
T 1vkm_A 201 --------IENVEEVLKIYESMKEMELEKTLMVLN 227 (297)
T ss_dssp --------ECSHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred --------CCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 222333334455566789888888875
No 74
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=45.91 E-value=1.1e+02 Score=26.47 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcC
Q 007779 225 GGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (590)
Q Consensus 225 G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~ 285 (590)
.+.||.+|..++...++. ....+..++...|+.+.+...-.-.|++||.-...-+....
T Consensus 41 ~R~Ltddev~~Va~~L~~--~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa~G 99 (107)
T 3ol3_A 41 KRSLTEDEVVRAAQAILR--STDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLASVG 99 (107)
T ss_dssp TCCCCHHHHHHHHHHHHH--HCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHHh--ccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhcC
Confidence 446999999999999982 00001128899999999999888889999999887776554
No 75
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=42.37 E-value=33 Score=29.29 Aligned_cols=49 Identities=24% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHhh--cCCCCCHHHHHHHHHHhcCCcc--CCCCCCCCHHHHHHHHHHH
Q 007779 215 LVGALREVL--AGGHLGYEEVQGVLRDVLPLQV--DNKAPGVSESLLSAFLIGQ 264 (590)
Q Consensus 215 L~~~L~kl~--~G~~Lt~eEa~~a~~~Il~~~~--~~~~g~~sd~qigAFL~al 264 (590)
|.+|...-. .|-.++++||++++--+= .-. ..-..++||.|++||=...
T Consensus 47 LskWy~~aA~~~G~~~~~d~ARE~vYGMp-y~eWKa~~Q~eAt~eQ~aafe~~~ 99 (104)
T 3fyb_A 47 LAKWLMEAATEQGVELDYDGAREYVYGMP-FAEWKTLYQKPASEAQLAAFEAKQ 99 (104)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHSSC-HHHHHHHHCCCCCHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHhCCC-HHHHHHHHCCCCCHHHHHHHHHhh
Confidence 455555443 378999999999986542 000 0005678999999985543
No 76
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=40.76 E-value=8.7 Score=36.54 Aligned_cols=49 Identities=4% Similarity=-0.170 Sum_probs=34.4
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+.+|.|++-.|++...+..+...+.+. ++++ ....||.+ |-|-+.|+.+
T Consensus 88 ~~~D~livpGG~~~~~~l~~~~~l~~~-l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFDFPDNETLQYV-LQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp SSCSEEEECCCTTHHHHSTTCHHHHHH-HHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEECCCcchHHHhhcCHHHHHH-HHHHHHCCCEEEEEChHHHHHHHc
Confidence 358999999888753211233457777 6664 45689999 9999988865
No 77
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=40.47 E-value=40 Score=29.40 Aligned_cols=54 Identities=6% Similarity=0.065 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcC
Q 007779 226 GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (590)
Q Consensus 226 ~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~ 285 (590)
+.||.||..++...++. +|.+++..|++++..+.-.-.++++|.-...-+....
T Consensus 39 r~Ltdeev~~Va~~L~~------~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~G 92 (112)
T 2lky_A 39 RRLTNDEIKAIAEDLEK------RAHFDHIDIGVLITQMTDEMPREEDIERVRRHLALQG 92 (112)
T ss_dssp TTCCHHHHHHHHHHHHH------HCCCSCCCSHHHHHHHTTCCCCHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 78999999999999983 6788999999999999888889999988877776644
No 78
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=39.23 E-value=13 Score=38.00 Aligned_cols=138 Identities=11% Similarity=0.031 Sum_probs=86.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEE
Q 007779 249 APGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCL 328 (590)
Q Consensus 249 ~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~ 328 (590)
+..+.|+-++ ++-+--.=|.+.+||..++++ +...+... .+.=..++.|.+|..|. +. .++++..+|++|.
T Consensus 61 ~~GavPATIa-i~~G~~~VGL~~~eLe~la~~--~~~~K~Sr--RDl~~~~a~g~~GaTTV--aa--Tm~lA~~AGI~VF 131 (316)
T 4ex8_A 61 GAGAVPATIG-IAGGKLVVGLTDSLIERFAST--KGIPKISA--RDIGGALAGGGLGATTV--AG--TIVIAERAGIQVF 131 (316)
T ss_dssp TTTCEEEEEE-EETTEEEESCCHHHHHHHHHC--TTCCEECG--GGHHHHHHHCSCBEECH--HH--HHHHHHHHTCCEE
T ss_pred HcCCCcceEE-EECCEEEEcCCHHHHHHHhcC--CCccccch--hhHHHHHhCCCCccccH--HH--HHHHHHHCCCcEE
Confidence 3445555554 444444567899999999872 22222221 12112356788887652 22 3456677899999
Q ss_pred eecCCCCCCCC-----C-CCHHHHHHh---------cCCCCCCCHHHHHHHHHhccCceEeecchhhChHh---------
Q 007779 329 LHGAEWMPPKG-----G-VTEEQMLKF---------MGASTNLSVLQAKELLEDEEIGFAYVSLREARPSL--------- 384 (590)
Q Consensus 329 kHGnr~vtsk~-----G-st~aDvLea---------LGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal--------- 384 (590)
-.|+=+==.+. - | +|+.|- -|++--++....-+.||..|+..+ -|.....|++
T Consensus 132 aTGGiGGVHRgae~t~DIS--aDL~eLarTpV~VVcaG~KsILDi~~TLE~LET~GV~Vv-gy~td~fPaFy~r~Sg~~~ 208 (316)
T 4ex8_A 132 TTAGIGGVHRRGEDTLDIS--PDLLQFRKTKMTVVSGGAKSILDHRLTAEYLETAGVPVY-GYRTDKLAAFVVREADVPV 208 (316)
T ss_dssp ECSCBCCBBTTHHHHCCBC--THHHHTTTCCEEEEESBBCTTBCHHHHHHHHHHTTCCEE-EETCSBCCBTTBSCCSCBC
T ss_pred EeCCccccCCCCCCCcchh--hhHHHhcCCCeEEEecccchhhcchHHHHHHHhCCceEE-EecCCCCceeeeCCCCCcC
Confidence 99875521221 1 4 787774 288888999999999999777654 2344455543
Q ss_pred ---------HHHHhhhcccCCCC
Q 007779 385 ---------YSLIGLREHIKKRP 398 (590)
Q Consensus 385 ---------~~l~~vR~~Lg~Rt 398 (590)
.+++..++.||+.+
T Consensus 209 pr~d~~~e~A~~~~a~~~lgl~~ 231 (316)
T 4ex8_A 209 TRMDDLHTAARAAEAHWQVNGPG 231 (316)
T ss_dssp EEESSHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC
Confidence 45667777888777
No 79
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=38.19 E-value=1.1e+02 Score=30.53 Aligned_cols=130 Identities=14% Similarity=0.006 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCCHHHHHHHHH-hhhhcCCC---CCCC-CCCCceEEccCCCCCCccccchHHHHH
Q 007779 249 APGVSESLLSAFLIGQRMN-----RETDRELKAYCL-AFDDELGP---PPVA-DVKSLTHYGEPYDGNTRFFRSTLFVAA 318 (590)
Q Consensus 249 ~g~~sd~qigAFL~alr~K-----gET~eElag~~~-A~~~~~~~---~~~~-~~~~vD~~GtGgDG~~t~niST~laA~ 318 (590)
..+++....-.|+-.++-+ +.+++++...+. .+.+.... ..+. ...++-++|.+|.||.|+-. .++..
T Consensus 51 ~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvG~~GsGKTTl~~--~LA~~ 128 (296)
T 2px0_A 51 ETGIKESTKTNTLKKLLRFSVEAGGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLA--KLAAI 128 (296)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHSSSCCCTTTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTSSHHHHHH--HHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHhCCcccccccCCCcEEEEECCCCCCHHHHHH--HHHHH
Confidence 4556666666666555211 334444444332 33332211 1111 12367789999999876332 22333
Q ss_pred HHhcCCCcEEeecCCCCCCCCCCCHHHHHHh----cCCCC--CCCHHHHHHHHHhc-cCceEeecchhhChHh
Q 007779 319 VRSCYGESCLLHGAEWMPPKGGVTEEQMLKF----MGAST--NLSVLQAKELLEDE-EIGFAYVSLREARPSL 384 (590)
Q Consensus 319 vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLea----LGi~i--~~s~e~a~~~Le~~-g~gf~fl~a~~~~Pal 384 (590)
+....|.+|..-+.+.. +.+. .+.|+. +|+++ ..++.++...+... +.-+++++.+...+..
T Consensus 129 l~~~~G~~V~lv~~D~~--r~~a--~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dlvIiDT~G~~~~~ 197 (296)
T 2px0_A 129 SMLEKHKKIAFITTDTY--RIAA--VEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDHVFVDTAGRNFKD 197 (296)
T ss_dssp HHHTTCCCEEEEECCCS--STTH--HHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSEEEEECCCCCTTS
T ss_pred HHHhcCCEEEEEecCcc--cchH--HHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCEEEEeCCCCChhh
Confidence 33347989988776552 2222 444544 56653 34556665555432 3567777766665543
No 80
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=36.15 E-value=1.2e+02 Score=26.37 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHhcCCccCCCCC-------CCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcC
Q 007779 225 GGHLGYEEVQGVLRDVLPLQVDNKAP-------GVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (590)
Q Consensus 225 G~~Lt~eEa~~a~~~Il~~~~~~~~g-------~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~ 285 (590)
.+.||.||..++...++. ++ .+++..|+.+.+-..-.-.|+++|.-...-+....
T Consensus 38 ~R~LtdeEV~~Va~~L~~------~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~G 99 (112)
T 2m0n_A 38 RRTLTEEQVQEVVAKLTD------PESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAGG 99 (112)
T ss_dssp CSSCCHHHHHHHHHHHTC------TTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHCC
T ss_pred hccCCHHHHHHHHHHHHh------ccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhcC
Confidence 456999999999999982 33 38889999999999888889999999887777654
No 81
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=35.08 E-value=53 Score=28.20 Aligned_cols=54 Identities=7% Similarity=0.081 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcC
Q 007779 226 GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 285 (590)
Q Consensus 226 ~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~ 285 (590)
+.||.+|..++...++. +|.+++..|++++..+.-.-.|+++|.-...-+....
T Consensus 37 r~Ltdeev~~Va~~L~~------~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~G 90 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMR------LGDFDQIDIGVVITHFTDELPSPEDVERVRARLAAQG 90 (103)
T ss_dssp TTSCHHHHHHHHHHHHH------HTSSCSSCHHHHHHSCCSSCSCHHHHHHHHHHHGGGC
T ss_pred ccCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 57999999999999993 6789999999999988888889999998887776654
No 82
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=34.50 E-value=1.5e+02 Score=29.90 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=66.9
Q ss_pred HHHHHHHhhcC-CCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHh--cCCCH-HHHH-HHHHhhhh----cC
Q 007779 215 LVGALREVLAG-GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NRETD-RELK-AYCLAFDD----EL 285 (590)
Q Consensus 215 L~~~L~kl~~G-~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~--KgET~-eEla-g~~~A~~~----~~ 285 (590)
|.+.|+++..+ ..++.+-.+++-..++ ..++...-.-.|+-.++- +++.. +.+. .+.+.+.+ ..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~-------~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (320)
T 1zu4_A 18 FSKDIKKLSKKYKQADDEFFEELEDVLI-------QTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDND 90 (320)
T ss_dssp HHHHHHHHHHTCCCCSHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCccc
Confidence 77778888777 6799877777777888 788888888888887764 34322 2111 11112211 11
Q ss_pred -----CCCCC--CCCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCC
Q 007779 286 -----GPPPV--ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEW 334 (590)
Q Consensus 286 -----~~~~~--~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~ 334 (590)
..+.. ....++-++|.+|.|+.|+-. . .|..++..|-+|..-+.+-
T Consensus 91 ~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~--~-LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 91 WTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLA--K-MANYYAELGYKVLIAAADT 143 (320)
T ss_dssp C----CCCCCCTTSCEEEEEESSTTSSHHHHHH--H-HHHHHHHTTCCEEEEECCC
T ss_pred ccccccCccccCCCCeEEEEECCCCCCHHHHHH--H-HHHHHHHCCCeEEEEeCCC
Confidence 11222 122367788999999875322 2 2334556788999887653
No 83
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=33.87 E-value=25 Score=33.90 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=32.8
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+.+|.||+-.|+|... ..+-..+++. ++++ ....+|.+ |-|-..|+.+
T Consensus 64 ~~~D~livpGG~g~~~-~~~~~~l~~~-lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 64 PPLDVICIPGGTGVGA-LMEDPQALAF-IRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CCCSEEEECCSTTHHH-HTTCHHHHHH-HHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CcCCEEEECCCCChhh-hccCHHHHHH-HHHHHhcCCEEEEECHHHHHHHHc
Confidence 3579999988887421 1122356777 6664 44588888 9999888865
No 84
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=31.31 E-value=18 Score=38.19 Aligned_cols=170 Identities=12% Similarity=0.048 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCC-------HHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCCC----ccc---cchHHHHHHHhc
Q 007779 257 LSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT----RFF---RSTLFVAAVRSC 322 (590)
Q Consensus 257 igAFL~alr~KgET-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~~----t~n---iST~laA~vlAa 322 (590)
..+++.+.-.+|+| .+++...+++|++....+...+ .+-+.|.++.+.. ... -++.+++.+++.
T Consensus 26 ~r~Llaa~la~g~t~i~n~~~~~dv~~t~~~L~~lGa~i~~~~--~~~I~~~~~~~~~~~~d~~~~~ras~~l~~alla~ 103 (419)
T 1ejd_A 26 LPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERXG--SVWIDASNVNNFSAPYDLVKTMRASIWALGPLVAR 103 (419)
T ss_dssp HHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESS--SEEEECTTCCCCEECHHHHTTCGGGGGGHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCCCcHHHHHHHHHHHHCCCEEEEcc--eEEEecCCCCCCcCchHHhhhhhHHHHHHHHHhhc
Confidence 44555665666652 5788899999998776654322 3334444432110 011 222345556665
Q ss_pred CC-CcEEeecCCCCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchhhChHhHHHHhhhcccCCCCCCC
Q 007779 323 YG-ESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVA 401 (590)
Q Consensus 323 ~G-v~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pal~~l~~vR~~Lg~RtPL~ 401 (590)
.| +.|...|+..+..+--..+.|.|+.||++++. + .|+..+-.. ..+.+.+=.+...+.-.
T Consensus 104 ~~~~~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~~----------~--~g~~~v~~~------~~L~g~~i~~~~~s~~~ 165 (419)
T 1ejd_A 104 FGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKL----------E--EGYVKASVN------GRLKGAHIVMDKVSVGA 165 (419)
T ss_dssp HSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEE----------E--TTEEEEECS------SSCBCCEEECSSCCHHH
T ss_pred CCceEEEecCCcccCCCchHHHHHHHHHCCCEEEE----------c--CCEEEEEEc------CCccceEEecCCCCHHH
Confidence 55 68888998888766544467999999998863 1 133222111 01222222222212001
Q ss_pred cchhhhhhhhccC-CceEEEEecCCcchHHHHHHHHHcCCc------eEEEEec
Q 007779 402 TSEKVQQFVRAQG-REAIVAGFYHEGYEEPLLMLMKRRGVH------SGLVVKG 448 (590)
Q Consensus 402 np~k~~~~lnP~~-~~~~v~GV~h~~~~~~~a~~l~~lG~~------~alVV~G 448 (590)
++.-+ ++.+.. ....+.++.++++.+.+++.|+.+|.+ ..+.|+|
T Consensus 166 ~~~ll--~aa~~a~G~t~I~~~~~e~~i~~t~~~L~~~Ga~i~~~~~~~i~I~g 217 (419)
T 1ejd_A 166 TVTIM--SAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEG 217 (419)
T ss_dssp HHHHH--HHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEEC
T ss_pred HHHHH--HHHhcCCCcEEEEeCCCCchHHHHHHHHHHCCCEEEEccCCEEEEeC
Confidence 11111 112221 234566888888999899999999974 2466776
No 85
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=30.57 E-value=1.7e+02 Score=29.36 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=66.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCC---CCC-
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGP---PPV- 290 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~KgET~eElag~~~A~~~~~~~---~~~- 290 (590)
|.+.|+++..|+.++.+-.+++-..++ ..+++..-.-.|+-.++- .+++-...+.+.+.+...+ +..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~L~-------~~dv~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~ 100 (306)
T 1vma_A 30 FFGRVVKLLKGKKLDDETREELEELLI-------QADVGVETTEYILERLEE--KDGDALESLKEIILEILNFDTKLNVP 100 (306)
T ss_dssp THHHHHHHHTTCCCCHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHTT--CCSCHHHHHHHHHHHHTCSCCCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHhCCCCCCccc
Confidence 666777777666899877778888888 788888888888877754 3333222233344433322 211
Q ss_pred -CCCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCC
Q 007779 291 -ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAE 333 (590)
Q Consensus 291 -~~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr 333 (590)
....++-++|.+|.|+.|+-. - .|..++..|-+|..-+.+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~--~-LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCG--K-LAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHH--H-HHHHHHHTTCCEEEEEEC
T ss_pred CCCCeEEEEEcCCCChHHHHHH--H-HHHHHHhcCCEEEEEccc
Confidence 112357789999999876432 2 223344568888887754
No 86
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=29.73 E-value=1e+02 Score=21.10 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhc
Q 007779 253 SESLLSAFLIGQRMNRETDRELKAYCLAFDDE 284 (590)
Q Consensus 253 sd~qigAFL~alr~KgET~eElag~~~A~~~~ 284 (590)
+.+|.-||--.|.+.+.|.|+=-+|++.+++.
T Consensus 2 ~~~qQnaFYevLh~~nLtEeQrn~yI~slkdd 33 (34)
T 1l6x_B 2 NMQCQRRFYEALHDPNLNEEQRNAKIKSIRDD 33 (34)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHhHHHHHhcc
Confidence 46788999999999999999999999998864
No 87
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=29.54 E-value=43 Score=32.88 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=52.0
Q ss_pred cceeEeeccccH-------HHH-HHhCCceEEEeCCC--CCccccccCCCCCcccc---ccCCCeEEECCCC-CCCCCch
Q 007779 48 RIRLTVKADLDS-------ALI-DQLGLKESDIINPA--ISSSYRSSKLPKPNQTL---LEAQAKVCTGPTQ-TRPLRED 113 (590)
Q Consensus 48 ~~~~~~~~~~d~-------~~~-~~lg~~~~v~rnd~--~~~~~~~~~~~~~~~~~---~~~~~~ivlspGP-g~P~~~~ 113 (590)
++.|++.+.|.. ..| +.-|.++.++--+. +..+. .....++..+ -+.||.|||-.|+ |.. +..
T Consensus 25 ~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~--G~~i~~d~~l~~~~~~yD~liVPGG~~g~~-~l~ 101 (253)
T 3ewn_A 25 QIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDA--GLAIVPTATFGTCPRDLTVLFAPGGTDGTL-AAA 101 (253)
T ss_dssp EEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTT--SCEECCSEETTTSCSSCSEEEECCBSHHHH-HHT
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCC--CCEEeCCcCHHHcCCCCCEEEECCCccchh-hhc
Confidence 567888888876 334 23367777765432 21110 0001121111 1235899997776 532 111
Q ss_pred hhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 114 EAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 114 ~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+-..+++. |+++ ....+|.+ |-|-..|+.+
T Consensus 102 ~~~~l~~~-Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 102 SDAETLAF-MADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp TCHHHHHH-HHHHHTTCSEEEEETTHHHHHHHT
T ss_pred cCHHHHHH-HHHHHHcCCEEEEEChHHHHHHHc
Confidence 22456777 6664 44588888 9999988875
No 88
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=28.34 E-value=19 Score=35.47 Aligned_cols=49 Identities=8% Similarity=-0.141 Sum_probs=35.0
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
+.||.|+|-.|.|.+.+..+...+.++ ++++ ....||-+ |=|-+.|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~-l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNI-AQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHH-HHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHH-HHHHHHcCCEEEEEChHHHHHHHh
Confidence 358999999998754322234456777 6664 45688888 9999998775
No 89
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=28.08 E-value=13 Score=36.02 Aligned_cols=48 Identities=6% Similarity=-0.100 Sum_probs=33.7
Q ss_pred CCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 96 AQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 96 ~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
.||.||+-.|.|.+.+..+...+.++ ++++ ....||-+ |-|-++|+.+
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~-l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDI-ASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHH-HHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCcEEEECCCCCchhhcccCHHHHHH-HHHHHHcCCEEEEECCCHHHHHhc
Confidence 57999999888754322223456777 6664 45689999 9999988765
No 90
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=26.24 E-value=22 Score=34.60 Aligned_cols=94 Identities=9% Similarity=0.018 Sum_probs=51.6
Q ss_pred ccceeEeeccccH-------HHHHHhC--CceEEEeCCCCCccccccCCCCCcccc--ccCCCeEEECCC-CCCCCCchh
Q 007779 47 RRIRLTVKADLDS-------ALIDQLG--LKESDIINPAISSSYRSSKLPKPNQTL--LEAQAKVCTGPT-QTRPLREDE 114 (590)
Q Consensus 47 ~~~~~~~~~~~d~-------~~~~~lg--~~~~v~rnd~~~~~~~~~~~~~~~~~~--~~~~~~ivlspG-Pg~P~~~~~ 114 (590)
+|+.|++.+.|+. ..|+.-+ .++.++- +.-.+.-.......++..+ .+.+|.||+-.| +|.+. ..+
T Consensus 21 ~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~~g~~~-l~~ 98 (236)
T 3bhn_A 21 YKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGIPA-ALQ 98 (236)
T ss_dssp EEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCTTHHHH-HHT
T ss_pred CEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccccCCCEEEEcCCccCHhh-hcc
Confidence 3667888888876 3344423 4666665 3211110000000111111 345799999888 66532 112
Q ss_pred hhhHHHHHHHHhcCCC-Cccc-ccchHHHHhH
Q 007779 115 AFKVLDTILRSAKGDL-KDEE-EVSKAQLGAF 144 (590)
Q Consensus 115 ~g~~~~~~i~~~~~~~-PilG-CLGhQ~i~~~ 144 (590)
...+++. + .+.... +|.+ |-|-..|+.+
T Consensus 99 ~~~l~~~-L-~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 99 DENFMSA-L-KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp CHHHHHH-C-CCCTTTCEEEEETTHHHHHHHT
T ss_pred CHHHHHH-H-HhCCCCCEEEEEcHHHHHHHHc
Confidence 3456677 5 544445 8888 9999999876
No 91
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=25.39 E-value=3.4e+02 Score=28.59 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCCCCH----HHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHhc--------CCCHHH-HHHHH-H
Q 007779 214 RLVGALREVLAGGHLGY----EEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--------RETDRE-LKAYC-L 279 (590)
Q Consensus 214 ~L~~~L~kl~~G~~Lt~----eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~K--------gET~eE-lag~~-~ 279 (590)
+|.+.++++.....||. +-.+++...++ +.++.....-.|...++.+ +.++.+ +...+ +
T Consensus 7 ~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll-------~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~ 79 (432)
T 2v3c_C 7 NLNKALNKLKAAAFVDKKLIKEVIKDIQRALI-------QADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE 79 (432)
T ss_dssp HHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHH-------HTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHH
Confidence 47788888876667887 34456666667 6788888888887777653 234544 33322 2
Q ss_pred hhhhcCC----CCCCC--CCCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHH----Hh
Q 007779 280 AFDDELG----PPPVA--DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KF 349 (590)
Q Consensus 280 A~~~~~~----~~~~~--~~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvL----ea 349 (590)
.+.+... ++... ....|-++|.+|.|++|+-.. .|..++..|.+|+.-..+...+ +. .+-| +.
T Consensus 80 ~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~---La~~l~~~G~kVllv~~D~~r~--~a--~~qL~~~~~~ 152 (432)
T 2v3c_C 80 ELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAK---LARYIQKRGLKPALIAADTYRP--AA--YEQLKQLAEK 152 (432)
T ss_dssp HHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHH---HHHHHHHHHCCEEEECCSCCCT--TG--GGSSHHHHHH
T ss_pred HHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHH---HHHHHHHcCCeEEEEeccccCc--hH--HHHHHHhhhc
Confidence 2222111 12111 123677899999998764332 2223345588888766554222 22 2222 33
Q ss_pred cCCCCC------CCHH-HHHHHHHh-ccCceEeecchhhChH
Q 007779 350 MGASTN------LSVL-QAKELLED-EEIGFAYVSLREARPS 383 (590)
Q Consensus 350 LGi~i~------~s~e-~a~~~Le~-~g~gf~fl~a~~~~Pa 383 (590)
.|+++- .+|. -+.+.++. .+.-+++++.|-+++.
T Consensus 153 ~gv~v~~~~~~~~dp~~i~~~~l~~~~~~D~vIIDT~G~~~~ 194 (432)
T 2v3c_C 153 IHVPIYGDETRTKSPVDIVKEGMEKFKKADVLIIDTAGRHKE 194 (432)
T ss_dssp SSCCEECCSSSCCSSSTTHHHHHHTTSSCSEEEEECCCSCSS
T ss_pred cCcceEecCCCCCCHHHHHHHHHHHhhCCCEEEEcCCCCccc
Confidence 455421 1221 12233333 2467788888777653
No 92
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.38 E-value=50 Score=26.23 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchhhChH
Q 007779 344 EQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 383 (590)
Q Consensus 344 aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pa 383 (590)
.|..+.||++...+.+++++...+ + +..|||-
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~-------l-~~~~HPD 40 (82)
T 2ej7_A 9 VDYYEVLDVPRQASSEAIKKAYRK-------L-ALKWHPD 40 (82)
T ss_dssp CCHHHHTTCCTTCCHHHHHHHHHH-------H-HTTSCTT
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHH-------H-HHHHCcC
Confidence 689999999999999999999988 2 4457774
No 93
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=24.74 E-value=21 Score=33.81 Aligned_cols=47 Identities=6% Similarity=-0.119 Sum_probs=31.2
Q ss_pred CCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhH
Q 007779 96 AQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 96 ~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~ 144 (590)
.+|.||+-.|+|... ..+-..+++. |+++ ....+|-+ |-|-..|+.+
T Consensus 65 ~~D~livpGG~~~~~-~~~~~~~~~~-l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 65 IEKILFVPGGSGTRE-KVNDDNFINF-IGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp SEEEEEECCSTHHHH-HTTCHHHHHH-HHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CCCEEEECCCcchhh-hcCCHHHHHH-HHHHHHcCCEEEEEchHHHHHHhc
Confidence 368899977775321 1122356777 6654 44688888 9999998864
No 94
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=24.62 E-value=22 Score=34.82 Aligned_cols=49 Identities=4% Similarity=-0.134 Sum_probs=34.9
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHH-hcCCCCccc-ccchHHHHhH
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRS-AKGDLKDEE-EVSKAQLGAF 144 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~-~~~~~PilG-CLGhQ~i~~~ 144 (590)
+.||+|++-.|.|.+.+..+...+.++ +++ +....||-+ |=|-..|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~-l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDI-ASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHH-HHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHH-HHHHHHcCCEEEEECHHHHHHHHh
Confidence 358999999988754322233456777 665 445688888 9999999876
No 95
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.92 E-value=2.9e+02 Score=29.43 Aligned_cols=160 Identities=12% Similarity=0.098 Sum_probs=85.7
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHh--cC------CCH-HHHH-HHHHhhh
Q 007779 213 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NR------ETD-RELK-AYCLAFD 282 (590)
Q Consensus 213 m~L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~--Kg------ET~-eEla-g~~~A~~ 282 (590)
-+|.+.++++.....||.+...++++.|-..++ ..++...-.-.|.-.++- ++ .++ +++. .+.+.+.
T Consensus 8 ~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll---~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~ 84 (443)
T 3dm5_A 8 KALANTLKKIARASSVDEALIKELVRDIQRALI---QADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELT 84 (443)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHH
Confidence 358889999877778998887766655442222 456666555566554432 12 232 2222 2233333
Q ss_pred hcCCC----CCCCC-CCCceEEccCCCCCCccccchHHHHHHHhcCCCcEEeecCCCCCCCCCCCHHHHHH----hcCCC
Q 007779 283 DELGP----PPVAD-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLK----FMGAS 353 (590)
Q Consensus 283 ~~~~~----~~~~~-~~~vD~~GtGgDG~~t~niST~laA~vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLe----aLGi~ 353 (590)
+.... .+... ..+|-++|.+|.|++|+-. - .|..++..|.+|+.-..+..- .+. .+-|+ ..|++
T Consensus 85 ~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~--k-LA~~l~~~G~kVllv~~D~~R--~aa--~eqL~~~~~~~gvp 157 (443)
T 3dm5_A 85 KFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVA--K-LARYFQKRGYKVGVVCSDTWR--PGA--YHQLRQLLDRYHIE 157 (443)
T ss_dssp HHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHH--H-HHHHHHTTTCCEEEEECCCSS--THH--HHHHHHHHGGGTCE
T ss_pred HHhcCcccccccCCCCeEEEEECcCCCCHHHHHH--H-HHHHHHHCCCeEEEEeCCCcc--hhH--HHHHHHHHHhcCCc
Confidence 32221 11111 2367889999999876322 2 233456679999887655422 232 34343 34553
Q ss_pred C-----CCCHHHH-HH---HHHhccCceEeecchhhCh
Q 007779 354 T-----NLSVLQA-KE---LLEDEEIGFAYVSLREARP 382 (590)
Q Consensus 354 i-----~~s~e~a-~~---~Le~~g~gf~fl~a~~~~P 382 (590)
+ ..+|.++ .+ .+...+.-++++..+-.++
T Consensus 158 v~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 158 VFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 2 2344433 23 3333456777787766544
No 96
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=23.28 E-value=43 Score=27.62 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=30.4
Q ss_pred CCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchhhChH
Q 007779 339 GGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 383 (590)
Q Consensus 339 ~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pa 383 (590)
...+..|+++.||++.+.+.+++++...+ + +-.|||-
T Consensus 11 ~~~~~~~~y~vLgv~~~as~~eIKkaYrk-------l-a~~~HPD 47 (88)
T 1iur_A 11 RGSILKEVTSVVEQAWKLPESERKKIIRR-------L-YLKWHPD 47 (88)
T ss_dssp SSSCHHHHHHHHHHTTSSCSHHHHHHHHH-------H-HHHTCTT
T ss_pred CCccHHHHHHHhCCCCCCCHHHHHHHHHH-------H-HHHHCCC
Confidence 34445899999999999999999999998 2 4567885
No 97
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=22.96 E-value=2.6e+02 Score=21.41 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhcCCccCCCCCCCCHHHHHHHHHHHHh
Q 007779 215 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRM 266 (590)
Q Consensus 215 L~~~L~kl~~G~~Lt~eEa~~a~~~Il~~~~~~~~g~~sd~qigAFL~alr~ 266 (590)
+..+++.+ |..++.+|+..+|..+= .+.+|.++-.+.-.++...+.
T Consensus 31 l~~~l~~~--g~~~~~~~~~~l~~~~d----~~~dg~i~~~eF~~~~~~~~~ 76 (92)
T 2kn2_A 31 LRHVMINL--GEKLTDEEVEQMIKEAD----LDGDGQVNYEEFVKMMMTVRG 76 (92)
T ss_dssp HHHHHHHT--TCCCCHHHHHHHHHHHC----SSCCSSEEHHHHHHHHHHHTT
T ss_pred HHHHHHHh--CCCCCHHHHHHHHHHhC----CCCCCcEeHHHHHHHHHhccC
Confidence 56666655 66788888888887764 233677777776666655543
No 98
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=22.34 E-value=1e+02 Score=32.51 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCC-------CHHHHHHHHHhhhhcCCCCCCCCCCCceEEccCCCCC----Ccc---ccchH--HHHH
Q 007779 255 SLLSAFLIGQRMNRE-------TDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRF---FRSTL--FVAA 318 (590)
Q Consensus 255 ~qigAFL~alr~KgE-------T~eElag~~~A~~~~~~~~~~~~~~~vD~~GtGgDG~----~t~---niST~--laA~ 318 (590)
++.-+++.|.-.+|+ ..+++..++++|++....+...+ ..+-+.|.+..+. ... |-.|. |++.
T Consensus 22 ~t~r~Llaa~La~g~t~I~n~~~s~Dv~~~~~~L~~lG~~i~~~~-~~~~I~g~~~~~~~~p~~~id~~~sgt~~rll~a 100 (427)
T 1rf6_A 22 ISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKD-GVITVQGVGMAGLKAPQNALNMGNSGTSIRLISG 100 (427)
T ss_dssp HHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEET-TEEEEECCCSSCCCCCSSCEECTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEccCCCCHHHHHHHHHHHHcCCeEEecC-CEEEEECCCCCCcCCCcceeeccccchHHHHHHH
Confidence 344677777777775 24788888999998776553211 1333444331111 111 22222 4555
Q ss_pred HHhcCCCcEEeecCCCCCCCCCCCHHHHHHhcCCCCCC
Q 007779 319 VRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356 (590)
Q Consensus 319 vlAa~Gv~V~kHGnr~vtsk~Gst~aDvLeaLGi~i~~ 356 (590)
+++..+..|...|...+..+-=..+.|.|++||++++.
T Consensus 101 ~la~~~~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~~ 138 (427)
T 1rf6_A 101 VLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISG 138 (427)
T ss_dssp HGGGCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEE
T ss_pred HHhcCCcEEEEeCCCccCCCCHHHHHHHHHHCCCEEEE
Confidence 55767789999999877665433458999999998763
No 99
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=22.20 E-value=43 Score=33.51 Aligned_cols=50 Identities=18% Similarity=-0.018 Sum_probs=36.2
Q ss_pred cCCCeEEECCCCCCCCCchhhhhHHHHHHHHh-cCCCCccc-ccchHHHHhHh
Q 007779 95 EAQAKVCTGPTQTRPLREDEAFKVLDTILRSA-KGDLKDEE-EVSKAQLGAFF 145 (590)
Q Consensus 95 ~~~~~ivlspGPg~P~~~~~~g~~~~~~i~~~-~~~~PilG-CLGhQ~i~~~~ 145 (590)
+.||.|||-.|+|...+..+...+.++ |+++ ....+|-+ |-|-.+|+.+-
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~-l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAA-LQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHH-HHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHH-HHHHHHcCCEEEEECccHHHHHhhc
Confidence 467999999998765333334557777 6664 45688888 99999888765
No 100
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.49 E-value=58 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=27.2
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchhhChH
Q 007779 344 EQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 383 (590)
Q Consensus 344 aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pa 383 (590)
.|..+.||++.+.+.+++++...+ + +..|||-
T Consensus 7 ~~~y~iLgv~~~a~~~~Ik~ayr~-------l-~~~~HPD 38 (79)
T 2dn9_A 7 GDYYQILGVPRNASQKEIKKAYYQ-------L-AKKYHPD 38 (79)
T ss_dssp SCHHHHHTCCTTCCHHHHHHHHHH-------H-HHHTCTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHH-------H-HHHHCcC
Confidence 589999999999999999999988 2 4567775
No 101
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.28 E-value=73 Score=26.43 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchhhChH
Q 007779 344 EQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 383 (590)
Q Consensus 344 aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pa 383 (590)
.|..+.||++.+.+.+++++...+ + +..|||-
T Consensus 17 ~~~Y~vLgv~~~as~~eIk~ayr~-------l-~~~~HPD 48 (99)
T 2yua_A 17 TALYDLLGVPSTATQAQIKAAYYR-------Q-CFLYHPD 48 (99)
T ss_dssp SHHHHHHTCCTTCCHHHHHHHHHH-------H-HHHSCTT
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHH-------H-HHHHCcC
Confidence 689999999999999999999988 2 4557774
No 102
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.94 E-value=45 Score=27.21 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHhcCCCCCCCHHHHHHHHHhccCceEeecchhhChH
Q 007779 337 PKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 383 (590)
Q Consensus 337 sk~Gst~aDvLeaLGi~i~~s~e~a~~~Le~~g~gf~fl~a~~~~Pa 383 (590)
+.++. .|.++.||++.+.+.+++++...+ + +..|||-
T Consensus 4 ~~~~~--~~~y~iLgv~~~as~~eIk~ayr~-------l-~~~~HPD 40 (92)
T 2dmx_A 4 GSSGM--ANYYEVLGVQASASPEDIKKAYRK-------L-ALRWHPD 40 (92)
T ss_dssp CCCCC--CCHHHHHTCCTTCCTTHHHHHHHH-------H-HHHTCTT
T ss_pred CCCCC--cCHHHHcCCCCCCCHHHHHHHHHH-------H-HHHHCCC
Confidence 33444 689999999999999999999988 2 4567885
No 103
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.14 E-value=69 Score=27.37 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=19.8
Q ss_pred HHHHHHHhh--cCCCCCHHHHHHHHHHhcCCcc--CCCCCCCCHHHHHHHHHH
Q 007779 215 LVGALREVL--AGGHLGYEEVQGVLRDVLPLQV--DNKAPGVSESLLSAFLIG 263 (590)
Q Consensus 215 L~~~L~kl~--~G~~Lt~eEa~~a~~~Il~~~~--~~~~g~~sd~qigAFL~a 263 (590)
|.+|.+.-. .|-.++++||++++--+= .-. .+-..++||.|++||=..
T Consensus 48 LskWy~~aA~e~G~~~~~d~ARE~vYGMp-y~eWKa~~Q~eAt~eQ~aaf~~~ 99 (105)
T 2o35_A 48 LSNWYREAAEASGVPMSKEESREIVYGMP-YEEWRTQNQGEASPEQKAAFERN 99 (105)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHSSC-HHHHTC-----------------
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHhCCC-HHHHHHHHCCCCCHHHHHHHHHh
Confidence 555555543 478999999999986553 000 011457899999999443
Done!