BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007781
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
With Adp And Mg
pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
Length = 337
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 419 VLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVL 461
++ GGDGT+ V+N I ++ + P + ++P GT ND R L
Sbjct: 84 LIAAGGDGTLNEVVNGIAEK--PNRPKLGVIPXGTVNDFGRAL 124
>pdb|2BON|A Chain A, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
pdb|2BON|B Chain B, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
Length = 332
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 412 RKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLA 458
RK V+ GGDGT+ V A+ + P + ILP GT ND A
Sbjct: 79 RKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFA 125
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 419 VLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVL 461
++V GGDGTV N + P +AI+P GT ND +R L
Sbjct: 71 IIVFGGDGTVFECTNGLAPLEI--RPTLAIIPGGTCNDFSRTL 111
>pdb|2JGR|A Chain A, Crystal Structure Of Yegs In Complex With Adp
Length = 299
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 412 RKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLA 458
RK V+ GGDGT+ V A+ + P + ILP GT ND A
Sbjct: 54 RKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFA 100
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 419 VLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVL 461
++V GGDGTV N + P +AI+P GT ND +R L
Sbjct: 67 IIVFGGDGTVFECTNGLAPLEI--RPTLAIIPGGTCNDFSRTL 107
>pdb|4GWP|A Chain A, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|A Chain A, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 115
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 321 GELDKKIES-KPSFKRS-GSINQKDESQILQLKQKYELIDMPPDARPLLVFINKKSGAQR 378
GEL + ES KP F+ ++ + QL+++ +L+D R L + +NKK+ Q
Sbjct: 35 GELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLPINVNKKALGQD 94
Query: 379 GDSLRQRLNLL 389
+ + ++L+LL
Sbjct: 95 TEKMEEQLDLL 105
>pdb|2P1R|A Chain A, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|B Chain B, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|C Chain C, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|D Chain D, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases
Length = 299
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 412 RKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLA 458
R++ V+ GGDGT+ V A+ + P + +LP GT ND A
Sbjct: 54 RRLGVETVIAGGGDGTINEVSTALIQIRDGVAPALGLLPLGTANDFA 100
>pdb|1A0H|A Chain A, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|D Chain D, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
Length = 159
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 159 WTEITDQPSEASFC--SYCEEPCSGSF---LGGSP 188
W + DQP + +C +YCEEP G LG P
Sbjct: 67 WCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDP 101
>pdb|3RJ1|A Chain A, Architecture Of The Mediator Head Module
pdb|3RJ1|H Chain H, Architecture Of The Mediator Head Module
pdb|3RJ1|O Chain O, Architecture Of The Mediator Head Module
Length = 131
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 321 GELDKKIES-KPSFKRS-GSINQKDESQILQLKQKYELIDMPPDARPLLVFINKKSGAQR 378
GEL + ES KP F+ ++ + QL+++ +L+D R L + +NKK+ Q
Sbjct: 51 GELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLPINVNKKALGQD 110
Query: 379 GDSLRQRLNLL 389
+ ++L+LL
Sbjct: 111 TEKXEEQLDLL 121
>pdb|1R79|A Chain A, Solution Structure Of The C1 Domain Of The Human
Diacylglycerol Kinase Delta
Length = 84
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 172 CSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207
C+ C++ C GS L W CLWC+ +VH C ++
Sbjct: 41 CTVCDKTC-GSVLRLQD-WRCLWCKAMVHTSCKESL 74
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 403 GPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAID--KQNFVSPPPVAILPAGTGNDLA 458
G + G+ + RVL C G GT V++ +D QN S P VA + G G A
Sbjct: 80 GSQYGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQN-ASGPSVANMSLGGGQSTA 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,427,625
Number of Sequences: 62578
Number of extensions: 710125
Number of successful extensions: 1381
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 15
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)