Query 007781
Match_columns 590
No_of_seqs 382 out of 1639
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 15:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1169 Diacylglycerol kinase 100.0 1.6E-73 3.5E-78 621.7 18.7 492 41-590 3-513 (634)
2 KOG0782 Predicted diacylglycer 100.0 2.6E-74 5.6E-79 606.4 9.4 396 77-579 167-586 (1004)
3 KOG1170 Diacylglycerol kinase 100.0 1.9E-49 4E-54 431.9 3.2 302 50-498 10-325 (1099)
4 PRK00861 putative lipid kinase 100.0 2.4E-29 5.3E-34 261.8 21.9 182 363-580 2-186 (300)
5 PRK11914 diacylglycerol kinase 100.0 4.8E-29 1.1E-33 260.3 20.0 186 363-579 8-198 (306)
6 PRK13055 putative lipid kinase 100.0 7.8E-29 1.7E-33 262.0 19.9 186 363-580 2-192 (334)
7 PRK13057 putative lipid kinase 100.0 1.3E-28 2.9E-33 254.8 20.9 176 367-580 1-179 (287)
8 PRK13059 putative lipid kinase 100.0 1.3E-28 2.7E-33 256.1 20.4 183 363-580 1-187 (295)
9 PRK13337 putative lipid kinase 100.0 1.3E-28 2.7E-33 257.1 19.3 184 363-580 1-188 (304)
10 COG1597 LCB5 Sphingosine kinas 100.0 5.8E-28 1.3E-32 251.7 19.4 185 363-581 2-191 (301)
11 PRK13054 lipid kinase; Reviewe 100.0 1.1E-27 2.4E-32 249.6 20.1 183 363-580 3-190 (300)
12 TIGR03702 lip_kinase_YegS lipi 100.0 1.1E-27 2.3E-32 248.8 19.8 181 365-579 1-185 (293)
13 PRK12361 hypothetical protein; 100.0 2.5E-27 5.4E-32 265.9 23.2 182 363-577 242-427 (547)
14 TIGR00147 lipid kinase, YegS/R 100.0 5.3E-27 1.1E-31 243.2 20.6 184 363-580 1-189 (293)
15 PLN02958 diacylglycerol kinase 99.9 2E-26 4.4E-31 253.9 18.5 182 361-573 109-303 (481)
16 PLN02204 diacylglycerol kinase 99.9 3.7E-25 8.1E-30 244.2 21.3 197 361-580 157-432 (601)
17 smart00046 DAGKc Diacylglycero 99.9 2.8E-21 6E-26 176.3 12.5 100 367-467 1-102 (124)
18 KOG1116 Sphingosine kinase, in 99.8 4.5E-21 9.7E-26 208.4 13.5 189 361-575 177-373 (579)
19 PF00781 DAGK_cat: Diacylglyce 99.8 1.5E-20 3.2E-25 172.4 11.6 99 365-465 1-104 (130)
20 KOG0696 Serine/threonine prote 99.8 5.7E-21 1.2E-25 199.2 1.1 124 65-210 30-159 (683)
21 KOG1115 Ceramide kinase [Lipid 99.6 3.7E-15 7.9E-20 155.2 9.9 195 349-572 144-360 (516)
22 PF00609 DAGK_acc: Diacylglyce 99.6 1.8E-15 4E-20 144.2 5.5 80 511-590 1-80 (161)
23 KOG0694 Serine/threonine prote 99.5 1.1E-14 2.3E-19 161.1 0.7 119 70-210 149-279 (694)
24 KOG1169 Diacylglycerol kinase 99.4 3.1E-14 6.6E-19 157.4 2.5 136 78-234 97-235 (634)
25 KOG4236 Serine/threonine prote 99.3 1.1E-13 2.3E-18 148.7 -2.6 114 75-210 141-316 (888)
26 KOG4435 Predicted lipid kinase 99.2 5.7E-11 1.2E-15 124.0 12.6 171 348-527 43-222 (535)
27 PF00130 C1_1: Phorbol esters/ 98.8 4.4E-09 9.4E-14 81.5 2.6 52 80-142 1-52 (53)
28 smart00045 DAGKa Diacylglycero 98.7 5.8E-09 1.2E-13 99.3 2.3 79 511-589 1-79 (160)
29 cd00029 C1 Protein kinase C co 98.7 6.1E-09 1.3E-13 79.3 1.9 48 80-140 1-50 (50)
30 PF00130 C1_1: Phorbol esters/ 98.7 1.7E-08 3.7E-13 78.2 3.5 49 153-210 1-49 (53)
31 smart00109 C1 Protein kinase C 98.5 3E-08 6.6E-13 74.9 2.0 48 80-140 1-49 (49)
32 cd00029 C1 Protein kinase C co 98.4 1.9E-07 4.1E-12 71.0 2.6 49 153-210 1-49 (50)
33 smart00109 C1 Protein kinase C 98.3 5.3E-07 1.2E-11 68.0 2.8 48 153-210 1-48 (49)
34 PRK03708 ppnK inorganic polyph 98.1 9.2E-06 2E-10 84.3 9.7 111 365-493 2-119 (277)
35 PRK02645 ppnK inorganic polyph 98.1 2.7E-05 5.8E-10 81.9 11.7 120 363-499 3-128 (305)
36 PRK03378 ppnK inorganic polyph 97.7 0.00026 5.7E-09 74.0 11.2 114 363-497 5-130 (292)
37 KOG0695 Serine/threonine prote 97.6 7.5E-06 1.6E-10 85.1 -2.0 58 73-143 124-183 (593)
38 KOG4236 Serine/threonine prote 97.5 2.2E-05 4.8E-10 85.8 -0.4 53 79-144 267-321 (888)
39 KOG0696 Serine/threonine prote 97.3 4.4E-05 9.4E-10 81.5 -0.4 55 76-143 107-163 (683)
40 PRK01231 ppnK inorganic polyph 97.3 0.0026 5.6E-08 66.8 12.2 118 363-498 4-130 (295)
41 COG3199 Predicted inorganic po 97.3 0.00089 1.9E-08 70.3 8.5 49 405-458 87-138 (355)
42 PF01513 NAD_kinase: ATP-NAD k 96.7 0.0031 6.7E-08 65.7 7.0 68 415-497 76-143 (285)
43 PRK14077 pnk inorganic polypho 96.5 0.027 5.9E-07 58.9 12.3 114 363-496 10-130 (287)
44 PRK03372 ppnK inorganic polyph 96.5 0.028 6E-07 59.3 12.1 116 363-496 5-138 (306)
45 PRK02155 ppnK NAD(+)/NADH kina 96.5 0.029 6.4E-07 58.8 12.0 117 363-497 5-130 (291)
46 KOG1011 Neurotransmitter relea 96.4 0.00057 1.2E-08 75.9 -1.4 53 77-142 170-224 (1283)
47 PRK01911 ppnK inorganic polyph 96.3 0.062 1.3E-06 56.4 13.1 117 365-498 2-132 (292)
48 PRK04539 ppnK inorganic polyph 96.1 0.056 1.2E-06 56.8 11.9 117 363-497 5-135 (296)
49 PRK02649 ppnK inorganic polyph 96.0 0.056 1.2E-06 57.0 11.2 116 363-496 1-134 (305)
50 PRK03501 ppnK inorganic polyph 95.7 0.077 1.7E-06 54.9 10.5 107 363-498 2-109 (264)
51 KOG1170 Diacylglycerol kinase 95.7 0.0042 9.1E-08 70.9 1.3 79 511-590 614-692 (1099)
52 PRK14076 pnk inorganic polypho 95.0 0.21 4.7E-06 57.1 12.4 118 361-496 288-414 (569)
53 PRK14075 pnk inorganic polypho 94.9 0.48 1.1E-05 48.7 13.3 105 365-499 2-107 (256)
54 KOG0193 Serine/threonine prote 94.5 0.011 2.5E-07 66.3 0.4 80 48-141 144-226 (678)
55 PLN02935 Bifunctional NADH kin 94.5 0.33 7.2E-06 54.2 11.7 115 361-493 192-325 (508)
56 KOG2996 Rho guanine nucleotide 94.4 0.02 4.2E-07 63.6 1.9 77 51-140 496-572 (865)
57 PRK04885 ppnK inorganic polyph 94.3 0.4 8.7E-06 49.6 11.1 99 365-493 2-100 (265)
58 KOG0694 Serine/threonine prote 94.1 0.016 3.5E-07 65.8 0.5 50 165-221 165-214 (694)
59 PRK01185 ppnK inorganic polyph 94.0 0.38 8.2E-06 50.0 10.2 111 365-498 2-117 (271)
60 KOG4239 Ras GTPase effector RA 93.8 0.0075 1.6E-07 62.3 -2.6 60 70-142 42-103 (348)
61 PRK00561 ppnK inorganic polyph 92.9 0.24 5.3E-06 51.1 6.7 66 365-453 2-67 (259)
62 KOG0695 Serine/threonine prote 92.7 0.04 8.7E-07 58.1 0.6 41 167-210 139-179 (593)
63 PF03107 C1_2: C1 domain; Int 92.1 0.077 1.7E-06 36.3 1.2 29 94-133 2-30 (30)
64 PLN02727 NAD kinase 92.0 0.47 1E-05 56.3 8.2 107 360-487 675-800 (986)
65 KOG0957 PHD finger protein [Ge 90.3 0.18 3.8E-06 55.4 2.4 38 91-137 118-155 (707)
66 PF07649 C1_3: C1-like domain; 89.7 0.068 1.5E-06 36.5 -0.8 29 94-133 2-30 (30)
67 PRK02231 ppnK inorganic polyph 89.3 2.3 4.9E-05 44.3 9.7 34 416-453 43-76 (272)
68 COG0061 nadF NAD kinase [Coenz 87.9 6.4 0.00014 41.1 11.9 68 416-498 56-123 (281)
69 PF07649 C1_3: C1-like domain; 87.8 0.23 5E-06 33.9 0.8 29 171-204 2-30 (30)
70 KOG1011 Neurotransmitter relea 87.8 0.1 2.2E-06 58.6 -1.5 51 150-209 170-220 (1283)
71 PRK04761 ppnK inorganic polyph 87.6 2.5 5.5E-05 43.3 8.5 34 416-453 26-59 (246)
72 PF03107 C1_2: C1 domain; Int 87.3 0.38 8.2E-06 32.9 1.6 29 171-204 2-30 (30)
73 PLN02929 NADH kinase 86.9 2.3 5.1E-05 44.8 8.0 73 416-497 65-148 (301)
74 PF10254 Pacs-1: PACS-1 cytoso 83.7 2.7 5.9E-05 46.0 6.9 47 416-463 76-128 (414)
75 KOG3564 GTPase-activating prot 83.6 0.31 6.8E-06 53.4 -0.3 53 78-143 285-338 (604)
76 PF01102 Glycophorin_A: Glycop 81.3 2.4 5.2E-05 38.8 4.6 31 22-52 62-92 (122)
77 PF14446 Prok-RING_1: Prokaryo 75.1 2 4.3E-05 33.7 1.8 37 168-208 4-40 (54)
78 cd08180 PDD 1,3-propanediol de 75.0 14 0.00031 39.2 9.0 90 364-457 23-125 (332)
79 cd08181 PPD-like 1,3-propanedi 74.9 13 0.00028 40.0 8.7 94 364-461 26-144 (357)
80 cd08185 Fe-ADH1 Iron-containin 70.7 20 0.00043 38.8 9.0 96 364-462 26-151 (380)
81 PF12273 RCR: Chitin synthesis 70.0 3.8 8.3E-05 37.6 2.8 12 73-84 30-41 (130)
82 cd08197 DOIS 2-deoxy-scyllo-in 70.0 19 0.00041 38.9 8.5 87 364-456 24-125 (355)
83 cd08176 LPO Lactadehyde:propan 69.6 17 0.00037 39.3 8.2 95 364-462 29-148 (377)
84 cd07766 DHQ_Fe-ADH Dehydroquin 68.8 23 0.00051 37.3 8.9 89 363-454 23-117 (332)
85 PF00628 PHD: PHD-finger; Int 68.0 3 6.4E-05 31.5 1.4 33 94-137 1-33 (51)
86 cd08194 Fe-ADH6 Iron-containin 67.5 21 0.00045 38.7 8.3 92 363-458 23-139 (375)
87 cd08172 GlyDH-like1 Glycerol d 66.3 34 0.00074 36.6 9.6 88 364-459 24-118 (347)
88 KOG0193 Serine/threonine prote 66.0 2.7 5.9E-05 47.9 1.1 41 166-216 186-226 (678)
89 PF13831 PHD_2: PHD-finger; PD 65.7 1.3 2.8E-05 31.8 -1.0 20 117-136 3-22 (36)
90 cd08171 GlyDH-like2 Glycerol d 64.8 18 0.0004 38.6 7.2 87 364-458 23-119 (345)
91 KOG0954 PHD finger protein [Ge 64.5 1.3 2.8E-05 51.1 -1.8 38 91-137 270-307 (893)
92 KOG1244 Predicted transcriptio 64.3 4.1 8.9E-05 41.9 1.9 86 93-205 225-312 (336)
93 cd08173 Gro1PDH Sn-glycerol-1- 64.2 28 0.00061 37.1 8.4 82 364-454 26-113 (339)
94 cd08183 Fe-ADH2 Iron-containin 63.5 28 0.00061 37.7 8.3 87 364-459 23-139 (374)
95 cd08169 DHQ-like Dehydroquinat 63.3 33 0.00072 36.8 8.8 87 364-456 24-124 (344)
96 cd08186 Fe-ADH8 Iron-containin 63.1 24 0.00052 38.4 7.7 96 363-461 26-147 (383)
97 KOG2996 Rho guanine nucleotide 62.7 2.4 5.2E-05 47.7 -0.1 42 165-209 530-571 (865)
98 cd08187 BDH Butanol dehydrogen 62.2 30 0.00066 37.5 8.3 94 364-460 29-147 (382)
99 PRK10624 L-1,2-propanediol oxi 62.1 36 0.00079 36.9 8.9 94 363-461 30-151 (382)
100 cd08551 Fe-ADH iron-containing 61.5 36 0.00078 36.6 8.7 97 363-460 23-141 (370)
101 cd08174 G1PDH-like Glycerol-1- 60.7 46 0.00099 35.3 9.2 83 364-455 26-111 (331)
102 TIGR03405 Phn_Fe-ADH phosphona 60.3 59 0.0013 35.0 10.1 92 364-460 24-145 (355)
103 cd08179 NADPH_BDH NADPH-depend 59.5 31 0.00067 37.4 7.8 93 364-459 24-144 (375)
104 cd08182 HEPD Hydroxyethylphosp 58.5 50 0.0011 35.5 9.2 51 406-457 68-139 (367)
105 cd08192 Fe-ADH7 Iron-containin 58.5 42 0.00091 36.2 8.6 91 364-458 25-144 (370)
106 TIGR02638 lactal_redase lactal 58.3 44 0.00094 36.3 8.7 94 363-461 29-150 (379)
107 PF10367 Vps39_2: Vacuolar sor 58.1 43 0.00094 28.8 7.1 30 93-134 79-108 (109)
108 PRK00002 aroB 3-dehydroquinate 56.8 32 0.00069 37.0 7.3 88 363-456 31-133 (358)
109 COG4306 Uncharacterized protei 55.0 5.9 0.00013 36.2 1.1 24 156-179 55-78 (160)
110 cd08189 Fe-ADH5 Iron-containin 54.7 48 0.001 35.9 8.2 94 363-460 26-145 (374)
111 cd08170 GlyDH Glycerol dehydro 54.2 33 0.00071 36.7 6.8 88 364-459 23-119 (351)
112 PRK00843 egsA NAD(P)-dependent 53.3 49 0.0011 35.5 8.0 85 364-456 35-124 (350)
113 cd08550 GlyDH-like Glycerol_de 52.6 28 0.0006 37.3 6.0 88 364-459 23-119 (349)
114 KOG2807 RNA polymerase II tran 51.9 10 0.00022 40.1 2.3 104 91-219 262-374 (378)
115 TIGR01357 aroB 3-dehydroquinat 51.7 56 0.0012 34.8 8.1 82 364-451 21-115 (344)
116 PRK09860 putative alcohol dehy 51.2 84 0.0018 34.2 9.5 57 406-463 79-152 (383)
117 PTZ00286 6-phospho-1-fructokin 51.1 43 0.00093 37.6 7.3 45 412-458 173-220 (459)
118 PRK15138 aldehyde reductase; P 50.7 62 0.0013 35.3 8.4 95 364-461 30-150 (387)
119 KOG4180 Predicted kinase [Gene 49.9 9 0.0002 40.6 1.6 36 417-455 107-144 (395)
120 KOG3564 GTPase-activating prot 49.6 5.4 0.00012 44.1 -0.0 40 165-208 293-332 (604)
121 PF10367 Vps39_2: Vacuolar sor 49.4 11 0.00023 32.8 1.8 32 168-205 77-108 (109)
122 KOG1453 Chimaerin and related 48.8 7.7 0.00017 47.1 1.1 41 91-143 555-595 (918)
123 COG5151 SSL1 RNA polymerase II 48.6 9 0.0002 40.2 1.4 108 91-217 294-415 (421)
124 COG1454 EutG Alcohol dehydroge 47.7 90 0.002 34.1 8.9 98 363-464 29-151 (377)
125 cd08195 DHQS Dehydroquinate sy 47.5 68 0.0015 34.3 8.0 83 363-451 24-119 (345)
126 PF00628 PHD: PHD-finger; Int 47.1 13 0.00027 28.0 1.7 31 171-206 1-31 (51)
127 KOG0955 PHD finger protein BR1 46.6 9.5 0.00021 46.5 1.4 35 91-134 218-252 (1051)
128 cd08188 Fe-ADH4 Iron-containin 46.5 1.1E+02 0.0025 33.0 9.6 52 407-459 77-145 (377)
129 PF13831 PHD_2: PHD-finger; PD 46.2 7.6 0.00017 27.8 0.3 20 188-207 3-22 (36)
130 PRK09423 gldA glycerol dehydro 45.6 73 0.0016 34.3 7.9 88 364-459 30-126 (366)
131 cd08178 AAD_C C-terminal alcoh 45.4 82 0.0018 34.4 8.3 55 406-461 69-151 (398)
132 KOG2178 Predicted sugar kinase 45.3 10 0.00022 41.3 1.1 57 417-488 170-226 (409)
133 KOG0956 PHD finger protein AF1 45.1 12 0.00026 43.2 1.7 35 94-137 7-43 (900)
134 TIGR02483 PFK_mixed phosphofru 44.1 65 0.0014 34.4 7.1 49 406-459 85-133 (324)
135 KOG0954 PHD finger protein [Ge 43.9 17 0.00036 42.4 2.7 71 166-248 268-342 (893)
136 PF07015 VirC1: VirC1 protein; 43.9 1.7E+02 0.0036 29.9 9.5 94 364-460 1-101 (231)
137 smart00249 PHD PHD zinc finger 43.7 13 0.00029 26.5 1.3 33 94-137 1-33 (47)
138 PLN00180 NDF6 (NDH-dependent f 43.4 5.5 0.00012 37.6 -1.0 17 420-436 129-145 (180)
139 cd08549 G1PDH_related Glycerol 43.3 73 0.0016 33.9 7.4 80 364-452 25-113 (332)
140 PF07227 DUF1423: Protein of u 42.8 18 0.00038 40.1 2.5 50 91-144 122-172 (446)
141 PLN02564 6-phosphofructokinase 41.8 68 0.0015 36.2 7.0 49 408-458 169-220 (484)
142 PRK06756 flavodoxin; Provision 41.0 2E+02 0.0043 26.4 9.1 27 364-392 2-28 (148)
143 cd08177 MAR Maleylacetate redu 40.1 56 0.0012 34.8 5.9 85 364-456 24-115 (337)
144 cd08191 HHD 6-hydroxyhexanoate 39.8 1.4E+02 0.003 32.5 8.9 93 364-460 23-140 (386)
145 cd02340 ZZ_NBR1_like Zinc fing 39.0 22 0.00049 26.3 1.9 30 171-206 2-32 (43)
146 KOG4239 Ras GTPase effector RA 38.8 4.1 8.8E-05 42.7 -2.9 41 166-209 59-99 (348)
147 PF08746 zf-RING-like: RING-li 38.7 8.3 0.00018 28.7 -0.5 29 95-136 1-31 (43)
148 PRK06830 diphosphate--fructose 38.3 82 0.0018 35.2 6.9 46 411-458 168-216 (443)
149 PF08746 zf-RING-like: RING-li 38.2 17 0.00037 27.0 1.1 30 172-208 1-32 (43)
150 COG0353 RecR Recombinational D 38.1 36 0.00078 33.7 3.6 41 40-103 25-65 (198)
151 PF13685 Fe-ADH_2: Iron-contai 38.0 57 0.0012 33.6 5.3 86 363-456 19-112 (250)
152 cd08175 G1PDH Glycerol-1-phosp 37.6 1.1E+02 0.0024 32.7 7.6 79 364-451 24-112 (348)
153 PLN02834 3-dehydroquinate synt 35.7 94 0.002 34.6 6.9 83 364-452 101-198 (433)
154 PF00731 AIRC: AIR carboxylase 35.1 1.2E+02 0.0025 28.9 6.4 74 375-454 8-89 (150)
155 KOG0782 Predicted diacylglycer 34.7 11 0.00024 42.5 -0.5 53 150-209 167-219 (1004)
156 PF15050 SCIMP: SCIMP protein 34.2 54 0.0012 29.9 3.8 36 23-58 6-41 (133)
157 KOG0955 PHD finger protein BR1 33.7 22 0.00047 43.6 1.6 54 166-222 216-273 (1051)
158 PRK14071 6-phosphofructokinase 33.5 1.3E+02 0.0028 32.6 7.4 50 406-459 98-147 (360)
159 PF14446 Prok-RING_1: Prokaryo 33.5 17 0.00037 28.5 0.5 36 92-137 5-40 (54)
160 cd08199 EEVS 2-epi-5-epi-valio 33.2 1.8E+02 0.004 31.3 8.5 33 417-451 90-122 (354)
161 COG1979 Uncharacterized oxidor 32.0 1.4E+02 0.0031 32.1 7.0 63 359-424 26-94 (384)
162 PRK11572 copper homeostasis pr 31.5 96 0.0021 32.0 5.6 51 402-453 128-178 (248)
163 cd00763 Bacterial_PFK Phosphof 31.5 1E+02 0.0022 32.9 6.0 48 407-459 84-131 (317)
164 TIGR02482 PFKA_ATP 6-phosphofr 31.1 1E+02 0.0022 32.7 6.0 47 409-459 85-131 (301)
165 PRK14072 6-phosphofructokinase 30.8 85 0.0018 34.8 5.5 51 406-459 94-148 (416)
166 PF13901 DUF4206: Domain of un 30.7 38 0.00083 33.6 2.6 41 91-141 151-193 (202)
167 PRK10586 putative oxidoreducta 30.7 2E+02 0.0042 31.2 8.2 85 364-456 35-123 (362)
168 PF12219 End_tail_spike: Catal 30.3 28 0.0006 32.4 1.4 14 417-430 86-99 (160)
169 cd08193 HVD 5-hydroxyvalerate 30.1 2.6E+02 0.0057 30.2 9.1 53 406-459 74-143 (376)
170 cd00363 PFK Phosphofructokinas 30.0 1.5E+02 0.0032 31.9 7.1 50 407-458 84-136 (338)
171 TIGR00615 recR recombination p 29.2 62 0.0013 32.1 3.7 30 41-70 25-54 (195)
172 PF04505 Dispanin: Interferon- 29.0 79 0.0017 26.8 3.8 25 23-47 17-42 (82)
173 cd08184 Fe-ADH3 Iron-containin 28.1 3.6E+02 0.0077 29.0 9.6 93 364-461 26-143 (347)
174 PRK13305 sgbH 3-keto-L-gulonat 27.6 2E+02 0.0044 28.9 7.1 79 379-457 43-125 (218)
175 PLN02884 6-phosphofructokinase 26.6 1.2E+02 0.0026 33.6 5.7 50 406-458 134-187 (411)
176 cd08198 DHQS-like2 Dehydroquin 26.5 2.3E+02 0.0049 30.9 7.8 87 363-452 30-134 (369)
177 PF13778 DUF4174: Domain of un 26.1 1.5E+02 0.0032 26.7 5.4 67 363-429 9-92 (118)
178 smart00661 RPOL9 RNA polymeras 26.1 49 0.0011 24.8 1.9 29 94-128 2-30 (52)
179 PRK13805 bifunctional acetalde 26.0 3.3E+02 0.0072 33.1 9.9 69 363-435 480-558 (862)
180 TIGR01053 LSD1 zinc finger dom 25.5 41 0.0009 23.3 1.2 28 93-128 2-29 (31)
181 PF06943 zf-LSD1: LSD1 zinc fi 25.5 42 0.00091 22.2 1.2 24 95-126 1-24 (25)
182 KOG3362 Predicted BBOX Zn-fing 25.4 28 0.00061 32.7 0.5 22 91-127 117-138 (156)
183 PRK03202 6-phosphofructokinase 25.2 1.3E+02 0.0029 32.1 5.6 46 409-459 87-132 (320)
184 PRK00536 speE spermidine synth 24.8 47 0.001 34.4 2.1 17 418-434 76-93 (262)
185 PRK06203 aroB 3-dehydroquinate 24.4 3.1E+02 0.0068 30.0 8.5 85 364-451 43-145 (389)
186 PF07234 DUF1426: Protein of u 24.3 94 0.002 27.4 3.4 27 24-50 6-34 (117)
187 TIGR00640 acid_CoA_mut_C methy 24.2 5.4E+02 0.012 23.6 8.8 114 364-486 2-126 (132)
188 TIGR00730 conserved hypothetic 24.0 1.3E+02 0.0029 29.1 5.0 40 410-449 92-132 (178)
189 PF15135 UPF0515: Uncharacteri 23.2 73 0.0016 32.7 3.0 65 166-231 129-196 (278)
190 PF13824 zf-Mss51: Zinc-finger 23.2 57 0.0012 25.8 1.8 29 94-135 1-29 (55)
191 PRK09267 flavodoxin FldA; Vali 22.9 6.3E+02 0.014 23.6 10.2 28 364-393 2-29 (169)
192 KOG4323 Polycomb-like PHD Zn-f 22.8 31 0.00067 38.5 0.3 52 76-139 155-206 (464)
193 cd06273 PBP1_GntR_like_1 This 22.6 3E+02 0.0064 27.0 7.4 92 362-453 115-215 (268)
194 PF03932 CutC: CutC family; I 22.6 40 0.00087 33.6 1.0 51 402-452 127-177 (201)
195 PF13771 zf-HC5HC2H: PHD-like 22.1 56 0.0012 27.5 1.7 31 169-206 36-68 (90)
196 cd01836 FeeA_FeeB_like SGNH_hy 21.8 1.5E+02 0.0032 28.0 4.9 38 419-459 45-82 (191)
197 PF04122 CW_binding_2: Putativ 21.2 4.2E+02 0.0092 22.2 7.0 38 393-431 51-88 (92)
198 PTZ00287 6-phosphofructokinase 21.1 1.6E+02 0.0034 37.5 5.8 47 410-459 923-973 (1419)
199 cd06325 PBP1_ABC_uncharacteriz 21.0 4.2E+02 0.0091 26.2 8.2 75 362-439 130-207 (281)
200 PRK06555 pyrophosphate--fructo 20.9 1.8E+02 0.0039 32.1 5.7 50 407-458 104-156 (403)
201 PRK13844 recombination protein 20.8 1.1E+02 0.0024 30.5 3.6 29 42-70 30-58 (200)
202 PRK05637 anthranilate synthase 20.8 4.3E+02 0.0093 26.2 8.0 19 413-431 42-60 (208)
203 PF15616 TerY-C: TerY-C metal 20.6 57 0.0012 30.3 1.5 14 188-201 104-117 (131)
204 COG1691 NCAIR mutase (PurE)-re 20.6 1.3E+02 0.0027 30.8 4.0 33 416-454 174-206 (254)
205 PF11682 DUF3279: Protein of u 20.3 54 0.0012 30.4 1.3 26 188-220 96-121 (128)
206 cd06534 ALDH-SF NAD(P)+-depend 20.3 5.9E+02 0.013 27.0 9.5 58 380-437 136-193 (367)
207 PLN03028 pyrophosphate--fructo 20.2 2.6E+02 0.0056 32.7 7.0 50 407-458 165-217 (610)
208 COG4818 Predicted membrane pro 20.2 96 0.0021 27.3 2.7 25 25-49 53-77 (105)
209 TIGR00725 conserved hypothetic 20.1 1.3E+02 0.0028 28.6 3.9 35 411-450 88-122 (159)
210 cd02249 ZZ Zinc finger, ZZ typ 20.1 70 0.0015 23.8 1.7 30 171-206 2-32 (46)
No 1
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-73 Score=621.73 Aligned_cols=492 Identities=34% Similarity=0.551 Sum_probs=368.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhccCCCccCCCCCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCccccc
Q 007781 41 LTIAYTAFQWRRNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHR 120 (590)
Q Consensus 41 ~~~~~~~~~~~r~~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~ 120 (590)
..++|..+++.|...+.|-.++++.++.+ ..|.|...... +-.+|+||+.... .+.+.
T Consensus 3 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~------------~~~~~ 60 (634)
T KOG1169|consen 3 EVIYLKDIVCYRSLLETGTPVAKLEFKFP--------ILHSSEPDCII--RQMVCCVCLWSEM------------APSVD 60 (634)
T ss_pred ceEeechhhhhhhhhccCchhhhhhhccc--------cCcccCCchhH--hhhhhhhhhhccc------------ccccc
Confidence 35678889999999999999998877666 48999998775 3349999998432 23469
Q ss_pred ccccccccCCCccccccCcCccceecCccceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccc
Q 007781 121 CSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVH 200 (590)
Q Consensus 121 C~vC~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH 200 (590)
|++|+.++|..|...+.++|++....+..+..|+|.+.|+...+++..+++|.+|.+.|++.+..++++++|.||+++||
T Consensus 61 ~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~vh 140 (634)
T KOG1169|consen 61 CDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLWKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRTVH 140 (634)
T ss_pred eeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCCCCceEEeccccccchhhcccCceeeccccchHH
Confidence 99999999999999999999998777766666777666666678999999999999999887766678999999999999
Q ss_pred hhhhccCCCCCCCCCCCcCCCceeeCCcceeecccccccCccccccccchhhh--hhhHHhHhhccccccCCCCCCCCCC
Q 007781 201 VDCHNNMSNETGDICDLGPFRRLILSPLYVKELNHTLAGGILSSITHGANEIA--SQVRASIRSQSKKYKHGNEPSVDPV 278 (590)
Q Consensus 201 ~~C~~~~~~~~~~~CdlG~~r~~IlPP~~i~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~ 278 (590)
+.|...+.++....||+|++|..+++|.+++....+...+...++....+.++ ......+|-..+.++..++....+.
T Consensus 141 ~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~h~~~~~~~~~~~~~~~ 220 (634)
T KOG1169|consen 141 ERCVRRADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQCLKSVKADQGLTGPRCGWCQIRVHDKCKSELSQECDLGE 220 (634)
T ss_pred HHHHhhcCcccccccccccccceeecCcccccccCCccchhhhccccccccccccccceeeeeeecchHHHHhhhccChh
Confidence 99999999999999999999999999999875543222233333322221111 0011111111100111111111111
Q ss_pred CCCCCCCCCcchhhccccccccccccccccCCCCCCCCCCCcccccccccCCccccccCCCCcchhHHHHHhhhcceecc
Q 007781 279 DSGSTGDTSSESMADAHKTVHSSNRVEENCNGGTNVGDHYQDGELDKKIESKPSFKRSGSINQKDESQILQLKQKYELID 358 (590)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (590)
-++.....++...... ++. . .......+.+-+ +.+......+.+.+
T Consensus 221 ~~~~i~p~~~~~~~~~--------~~~--------~---------------~~~~~~~~~~~~---~~~~~~~~~~~~~~ 266 (634)
T KOG1169|consen 221 LKDHILPPSTLRPART--------ARV--------A---------------SDHSGLPGEKSE---EVTDAKKMQQLLVT 266 (634)
T ss_pred hhhccCCceeeecccc--------ccc--------c---------------cccccccccccc---cccccccccccccC
Confidence 1111111111000000 000 0 000000000000 00000112255667
Q ss_pred CCCCCCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhc
Q 007781 359 MPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 359 ~p~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
.|++++|++||||||||+++|..++++|+.+|||.||||+....+|..++.++++++.++|+||||||||+|||+.+.+.
T Consensus 267 ~~~~~~PLlVfvNpKSGg~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~gL~l~~~~~~~riLVcGGDGTvGWVL~~i~~~ 346 (634)
T KOG1169|consen 267 DPPDWRPLLVFVNPKSGGQQGERLLRRFRYLLNPVQVFDLLKRGGPRPGLTLFRDVPDFRILVCGGDGTVGWVLGCIDKL 346 (634)
T ss_pred CCCCCcceEEEEecCCcccccHHHHHHHHHhcChhhEEecccCCCCchhHHHHHhCCcceEEEecCCCcchhhhhhHHHh
Confidence 88899999999999999999999999999999999999999766799999999999999999999999999999999986
Q ss_pred CCC---CCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcc----------
Q 007781 439 NFV---SPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKL---------- 505 (590)
Q Consensus 439 ~~~---~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~---------- 505 (590)
+.. ..|||||||+||||||||+|+||+||++.+. ++.++|++++.|.++.||||+|.+....+..
T Consensus 347 n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~--~~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~~~ 424 (634)
T KOG1169|consen 347 NKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDR--NLIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPPEK 424 (634)
T ss_pred hccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchh--hHHHHHHhhhhccceecceeeEEeeccccccccccccCCCc
Confidence 532 4799999999999999999999999997543 2999999999999999999999987643221
Q ss_pred --cCCCcEEEEEEecchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccC--CCeEEEEEECCEEEEEc
Q 007781 506 --LEPPKFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFED--FPWQVRVVVDGTEIEVP 581 (590)
Q Consensus 506 --~~~~~~f~N~~siG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~--~~~~v~l~vDG~~i~~~ 581 (590)
.+...+|+||||||+||.|+++||.+||++|++|+||++||++|+..|++..+...|+. .+.+++++.|++++++|
T Consensus 425 ~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f~~~ck~~~~~i~i~~~~d~~dl~~p 504 (634)
T KOG1169|consen 425 GDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETFAARCKNLHLHIKIELDGDGEDLELP 504 (634)
T ss_pred CCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhHHHhhcCCccceEEEEcccceEccCC
Confidence 23456899999999999999999999999999999999999999999987777777776 56666666778899999
Q ss_pred cceeEEEeC
Q 007781 582 EVGTELVLI 590 (590)
Q Consensus 582 ~~~e~i~~~ 590 (590)
.++|||+||
T Consensus 505 ~sleGIv~L 513 (634)
T KOG1169|consen 505 KSLEGIVVL 513 (634)
T ss_pred CCceeEEEE
Confidence 889999997
No 2
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-74 Score=606.42 Aligned_cols=396 Identities=35% Similarity=0.639 Sum_probs=332.8
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccc---cCcCccceec-C-----
Q 007781 77 LAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA---HKDCKCVSMI-G----- 147 (590)
Q Consensus 77 ~~~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~---~~~Ck~~~~~-~----- 147 (590)
.++|.|.+++.++ .+|.|=++-..- .+++++...+|.+|+++||..|.... +..||.+... +
T Consensus 167 ~gEHvWletnvsg---d~CYvGE~~C~~------r~~kS~~rRkCAaCkIVvHT~CieqLeKiNfrCKptFRe~gsr~~r 237 (1004)
T KOG0782|consen 167 DGEHVWLETNVSG---DECYVGEKDCRV------RFAKSGERRKCAACKIVVHTNCIEQLEKINFRCKPTFREYGSRKTR 237 (1004)
T ss_pred CceeEEEecccCC---ceeeechHHHHH------HHhhhhhhccceeeeEEEechHHHHHHHhccccccchhhccccCcc
Confidence 6899999998864 589884443320 12233446799999999999999775 4689998542 2
Q ss_pred -ccceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCC---cceecccccccchhhhccCCCCCCCCCCCcCCCce
Q 007781 148 -FEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSP---IWCCLWCQRLVHVDCHNNMSNETGDICDLGPFRRL 223 (590)
Q Consensus 148 -~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~---~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~r~~ 223 (590)
...+.|||+++|- ..++|.+|+|.+.+.|.+.+. +..|+||+..+|.+-.++|...+++.|.+|.|+.+
T Consensus 238 E~~fvrHHWVHrrR-------qeGkC~~CgKgFQQKf~FhsKEivAisCSWCKqayH~KvtCFml~~iEEpCslGahaav 310 (1004)
T KOG0782|consen 238 ESGFVRHHWVHRRR-------QEGKCNTCGKGFQQKFFFHSKEIVAISCSWCKQAYHLKVTCFMLDKIEEPCSLGAHAAV 310 (1004)
T ss_pred cccchHHhHhhHhh-------hccccchhhhhhhhheeeccccEEEEEehHHHHHhhcchhhhhhhhhhcccccccccee
Confidence 2458999999873 578999999999987766442 78999999999999999999989999999999999
Q ss_pred eeCCcceeecccccccCccccccccchhhhhhhHHhHhhccccccCCCCCCCCCCCCCCCCCCCcchhhccccccccccc
Q 007781 224 ILSPLYVKELNHTLAGGILSSITHGANEIASQVRASIRSQSKKYKHGNEPSVDPVDSGSTGDTSSESMADAHKTVHSSNR 303 (590)
Q Consensus 224 IlPP~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (590)
|+||+||..+.+. .. ++.++ ||
T Consensus 311 ivPPTWIlr~~~p--qn--------------slkas-----kk------------------------------------- 332 (1004)
T KOG0782|consen 311 IVPPTWILRLANP--QN--------------SLKAS-----KK------------------------------------- 332 (1004)
T ss_pred ecCchHheeecCc--cc--------------hhhhh-----hh-------------------------------------
Confidence 9999999765421 00 11110 11
Q ss_pred cccccCCCCCCCCCCCcccccccccCCccccccCCCCcchhHHHHHhhhcceeccCCC-CCCcEEEEEcCCCCCCChhHH
Q 007781 304 VEENCNGGTNVGDHYQDGELDKKIESKPSFKRSGSINQKDESQILQLKQKYELIDMPP-DARPLLVFINKKSGAQRGDSL 382 (590)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~llVivNPkSG~~~g~~~ 382 (590)
.++++|+|+++++..++ +.+.+|.|.|+|+ .++|++||||||||+++|.++
T Consensus 333 ------------------------kkRtsfkRKasKkg~ee----~k~rpFvikPtsSplmkPLLVFVNPKSGGNqGsK~ 384 (1004)
T KOG0782|consen 333 ------------------------KKRTSFKRKASKKGHEE----NKGRPFVIKPTSSPLMKPLLVFVNPKSGGNQGSKA 384 (1004)
T ss_pred ------------------------cccCchhhhhhhccchh----ccCCceEEccCCCCCCCceEEEecCCCCCcchHHH
Confidence 12334567767766553 4578898888886 489999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhc
Q 007781 383 RQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLF 462 (590)
Q Consensus 383 ~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg 462 (590)
++.|-++|||.||||++. .+|.+|++++|++.+.+|++|||||||+|||..|+..++...||+||||+||||||||+|+
T Consensus 385 lq~f~WyLNPRQVFDlsq-~GPK~aLEmyRKV~nLRILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtln 463 (1004)
T KOG0782|consen 385 LQTFCWYLNPRQVFDLSQ-LGPKFALEMYRKVVNLRILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLN 463 (1004)
T ss_pred HHHHHHhcChhhheehhc-cCcHHHHHHHHhccceEEEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcc
Confidence 999999999999999985 6999999999999999999999999999999999999888899999999999999999999
Q ss_pred cCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccC---------Ccc-cCCCcEEEEEEecchhHHHhhHHhhhh
Q 007781 463 WGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQ---------GKL-LEPPKFLNNYLGVGCDAKVALDIHNLR 532 (590)
Q Consensus 463 ~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~---------G~~-~~~~~~f~N~~siG~DA~Va~~~~~~R 532 (590)
||+||++ +.+.+||..++++.++.||||++.+.++. |.. ..+..+|+||||+||||.|+++||+.|
T Consensus 464 WGGgytD----EPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~~~LPL~VfnNYFSlGfDAHVtLeFHeSR 539 (1004)
T KOG0782|consen 464 WGGGYTD----EPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGMQSALPLTVFNNYFSLGFDAHVTLEFHESR 539 (1004)
T ss_pred cCCCcCc----chHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccchhccchhHhhccccccccceEEEEecccc
Confidence 9999985 57999999999999999999999987542 211 224468999999999999999999999
Q ss_pred hcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEE
Q 007781 533 EENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIE 579 (590)
Q Consensus 533 e~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~ 579 (590)
|+||++|++||.||++|+-.++.+|+.++.+++..+|+|++||..++
T Consensus 540 eANPekfNSRfrNkmfYaG~afsDfl~rSskDL~khi~vvCDG~DlT 586 (1004)
T KOG0782|consen 540 EANPEKFNSRFRNKMFYAGLAFSDFLKRSSKDLCKHITVVCDGVDLT 586 (1004)
T ss_pred ccCHHHHHHHHhhhhhhcchhHHHHHhhhhHHhhhheEEEecCccCC
Confidence 99999999999999999999999999999999999999999998765
No 3
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-49 Score=431.90 Aligned_cols=302 Identities=35% Similarity=0.616 Sum_probs=235.7
Q ss_pred HHhhhhHHHHHHHHhhccCCCcc-CCCCCCCCeeEeeeeC--CCCCccccccCCCCCCCCCCCCcccCCccccccccccc
Q 007781 50 WRRNINLGWMKAIARSKKNPKTR-HKVPLAPHTWVLESVS--RGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGA 126 (590)
Q Consensus 50 ~~r~~~~~~~~~~~r~k~~~~~~-~~~~~~~H~w~~~~~~--~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~ 126 (590)
.+-++.+.|...+-+.|.+.... .+-..+.|.+.....+ ..-.+.|++|.. .|.+|..
T Consensus 10 ~~~ne~Ea~k~r~~~~k~~~~~~vakTa~g~~~~~~d~t~a~~~eSs~~n~~~s-------------------f~vi~~~ 70 (1099)
T KOG1170|consen 10 DVDNEREAWKQSILRAKDRMPEKVAKTASGPLFALLDLTSAHVAESSTNNPRPS-------------------FCVITPV 70 (1099)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHhcccccccccccCCCCCC-------------------eeEeccc
Confidence 45566778887777776555221 1111223333221111 112345666664 4556777
Q ss_pred ccCCCccccccCcCccceec-----------CccceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceeccc
Q 007781 127 AAHLSCSLSAHKDCKCVSMI-----------GFEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWC 195 (590)
Q Consensus 127 ~vH~~C~~~~~~~Ck~~~~~-----------~~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC 195 (590)
-.|..|.+.-...|++.... ....|+|+|+| ||++.+++|.+|+++|++.. ++++|+|.||
T Consensus 71 rk~r~~adn~ke~e~wi~~~kt~q~~e~~s~~~a~mphqw~E------gnlpvsskc~vc~k~cgs~~--rlqd~rclwc 142 (1099)
T KOG1170|consen 71 RKHRLCADNRKEMEKWINQSKTPQHLEFISPENAIMPHQWME------GNLPVSSKCSVCEKPCGSVL--RLQDYRCLWC 142 (1099)
T ss_pred HHhhhhccchhHHHHhhccccchhhccccCCCcccCchhhhh------cCCCcccccccccccccccc--ccCCcceEee
Confidence 88999999988889987431 12369999999 59999999999999998864 3589999999
Q ss_pred ccccchhhhccCCCCCCCCCCCcCCCceeeCCcceeecccccccCccccccccchhhhhhhHHhHhhccccccCCCCCCC
Q 007781 196 QRLVHVDCHNNMSNETGDICDLGPFRRLILSPLYVKELNHTLAGGILSSITHGANEIASQVRASIRSQSKKYKHGNEPSV 275 (590)
Q Consensus 196 ~~~vH~~C~~~~~~~~~~~CdlG~~r~~IlPP~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 275 (590)
+..||.+|..++..+ |.||..+-..+||++.++++.. |.+ + .+ .
T Consensus 143 ~~~vh~~c~~~~~~~----cs~~~~~~svi~ptal~~~~~d---g~~-------------v---~~-------~------ 186 (1099)
T KOG1170|consen 143 GCCVHDTCIGNLARA----CSLGHSALSVIPPTALKEVTPD---GTA-------------V---FW-------E------ 186 (1099)
T ss_pred ccEeehhhhhhHHhh----cccccccccccChhhhcccCCC---cce-------------e---eh-------h------
Confidence 999999999999987 9999999999999998765421 100 0 00 0
Q ss_pred CCCCCCCCCCCCcchhhccccccccccccccccCCCCCCCCCCCcccccccccCCccccccCCCCcchhHHHHHhhhcce
Q 007781 276 DPVDSGSTGDTSSESMADAHKTVHSSNRVEENCNGGTNVGDHYQDGELDKKIESKPSFKRSGSINQKDESQILQLKQKYE 355 (590)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (590)
..|
T Consensus 187 ----------------------------------------------------------------------------~a~- 189 (1099)
T KOG1170|consen 187 ----------------------------------------------------------------------------EAY- 189 (1099)
T ss_pred ----------------------------------------------------------------------------hhc-
Confidence 001
Q ss_pred eccCCCCCCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHH
Q 007781 356 LIDMPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 356 ~~~~p~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L 435 (590)
-++...|++||+|.+||..+|.+++++|+.+|||.|||++.. .+|..|+.++...+.++||||||||+|+||+..+
T Consensus 190 ---~~~~~spllv~insksgd~qg~~~lrkfkq~lnp~qVfdll~-~gp~~gL~~f~~~d~friLvcggdGsv~wvls~~ 265 (1099)
T KOG1170|consen 190 ---GGPCGSPLLVFINSKSGDSQGQRFLRKFKQILNPIQVFDLIA-GGPDFGLTFFSHFESFRILVCGGDGSVGWVLSAI 265 (1099)
T ss_pred ---CCCCCCceeEeecccCCCchhHHHHHhhhhhcCHHHHHHHHc-cCcchhhhhhhcccceEEEEecCCCCCcchHHHH
Confidence 134568999999999999999999999999999999999885 7999999999999999999999999999999999
Q ss_pred HhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEE
Q 007781 436 DKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAI 498 (590)
Q Consensus 436 ~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~ 498 (590)
+..+...+..++++|+|||||+||+||||..+.. +..+.++++.++++.+.+||+|.+..
T Consensus 266 ds~~lh~kcql~vlplgtgndlarvlgwg~a~~d---dt~~p~il~~~eRastkmldrwsvm~ 325 (1099)
T KOG1170|consen 266 DRLNLHSKCQLAVLPLGTGNDLARVLGWGHAFYD---DTLLPQILRTMERASTKMLDRWSVMA 325 (1099)
T ss_pred HhccchhhcccccccCCChHHHHHHhcccccCch---hhccHHHHHHHHhhhhhhhhcchhhh
Confidence 9988888999999999999999999999965542 34566899999999999999998764
No 4
>PRK00861 putative lipid kinase; Reviewed
Probab=99.97 E-value=2.4e-29 Score=261.84 Aligned_cols=182 Identities=17% Similarity=0.185 Sum_probs=149.4
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhcC
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQN 439 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~~ 439 (590)
+++++||+||.||++++.+.+++++..|...--+++..|+.++++.++++++ +.+.|+++|||||||+|+|+|..
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~-- 79 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGALIG-- 79 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhc--
Confidence 4689999999999998877788888877653124565677888888888875 35789999999999999999975
Q ss_pred CCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEecc
Q 007781 440 FVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVG 519 (590)
Q Consensus 440 ~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~siG 519 (590)
..+||||||+||||||||+||++. ++.++++.+.++..+.+|.+.+ +.++|+|.+|+|
T Consensus 80 --~~~~lgviP~GTgNdfAr~lgi~~---------~~~~a~~~i~~g~~~~iDlg~v-----------n~~~fin~a~~G 137 (300)
T PRK00861 80 --TDIPLGIIPRGTANAFAAALGIPD---------TIEEACRTILQGKTRRVDVAYC-----------NGQPMILLAGIG 137 (300)
T ss_pred --CCCcEEEEcCCchhHHHHHcCCCC---------CHHHHHHHHHcCCcEEeeEEEE-----------CCEEEEEEEecc
Confidence 468999999999999999999863 4677888888888899998655 347999999999
Q ss_pred hhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEE
Q 007781 520 CDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEV 580 (590)
Q Consensus 520 ~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~ 580 (590)
|||+|+...++. .++.+|+++|++.+++.+++ +++++++|++||+.++.
T Consensus 138 ~~a~v~~~~~~~--------~k~~~G~~aY~~~~l~~l~~----~~~~~~~i~~dg~~~~~ 186 (300)
T PRK00861 138 FEAETVEEADRE--------AKNRFGILAYILSGLQQLRE----LESFEVEIETEDQIITT 186 (300)
T ss_pred HHHHHHHHhhHH--------HHhcccHHHHHHHHHHHhcc----CCCeeEEEEECCeEEEE
Confidence 999999876532 23457999999999998773 67899999999987664
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=99.96 E-value=4.8e-29 Score=260.29 Aligned_cols=186 Identities=23% Similarity=0.225 Sum_probs=149.5
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
++++++|+||.||++++.+.++++.+.|..... +.+..|+.++++.++++++ +.+.|||+|||||||+|+|+|..
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~- 86 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAG- 86 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhcc-
Confidence 588999999999999988888877777765432 3444567788999988764 35789999999999999999974
Q ss_pred CCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEec
Q 007781 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (590)
Q Consensus 439 ~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~si 518 (590)
.++||||||+||||||||.||++. .++.++++.+..+..+.+|.+++...+ ...++|+|++|+
T Consensus 87 ---~~~~lgiiP~GT~NdfAr~lg~~~--------~~~~~a~~~i~~g~~~~iDlg~v~~~~------~~~~~f~n~~~~ 149 (306)
T PRK11914 87 ---TDIPLGIIPAGTGNDHAREFGIPT--------GDPEAAADVIVDGWTETVDLGRIQDDD------GIVKWFGTVAAT 149 (306)
T ss_pred ---CCCcEEEEeCCCcchhHHHcCCCC--------CCHHHHHHHHHcCCceEEEEEEEecCC------CCcEEEEEEEee
Confidence 468999999999999999999862 246677788888999999998885311 134799999999
Q ss_pred chhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECC-EEEE
Q 007781 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDG-TEIE 579 (590)
Q Consensus 519 G~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG-~~i~ 579 (590)
||||.|+...++.| +.+|+++|++.+++.++. .++++++|++|| +.++
T Consensus 150 G~~a~v~~~~~~~k---------~~~G~~aY~~~~l~~l~~----~~~~~~~i~~dg~~~~~ 198 (306)
T PRK11914 150 GFDSLVTDRANRMR---------WPHGRMRYNLAMLAELSK----LRPLPFRLVLDGTEEIV 198 (306)
T ss_pred ehHHHHHHHHHhcc---------ccCCchhhHHHHHHHHHh----cCCCcEEEEEeCCeEEE
Confidence 99999998765432 236899999999998874 578899999999 5554
No 6
>PRK13055 putative lipid kinase; Reviewed
Probab=99.96 E-value=7.8e-29 Score=262.01 Aligned_cols=186 Identities=21% Similarity=0.236 Sum_probs=147.6
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEecc-CCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHh
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSST-QGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t-~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
+++++||+||+||++++.+.+.+++.+|....+ +++..+ ..++++.++++++ ..+.|||+|||||||+|+|+|..
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~ 81 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP 81 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh
Confidence 468999999999999988888888888875443 343323 3556777777764 35789999999999999999985
Q ss_pred cCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEe
Q 007781 438 QNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLG 517 (590)
Q Consensus 438 ~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~s 517 (590)
.. ..+||||||+||||||||.||++. .++.++++.+..+..+.+|.+.+. +.+||+|.+|
T Consensus 82 ~~--~~~~LgiiP~GTgNdfAr~Lgi~~--------~~~~~a~~~l~~g~~~~vD~g~v~----------~~~~F~n~ag 141 (334)
T PRK13055 82 LE--KRPKMAIIPAGTTNDYARALKIPR--------DNPVEAAKVILKNQTIKMDIGRAN----------EDKYFINIAA 141 (334)
T ss_pred cC--CCCcEEEECCCchhHHHHHcCCCC--------cCHHHHHHHHHcCCcEEeeEEEEC----------CCcEEEEEeh
Confidence 32 458999999999999999999862 136677788888888889987652 2479999999
Q ss_pred cchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEE
Q 007781 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEV 580 (590)
Q Consensus 518 iG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~ 580 (590)
+|+||+|+...+.. .++.+|+++|+..+++.++. .++++++|++||..++.
T Consensus 142 ~G~da~v~~~~~~~--------~k~~~G~laY~~~~~~~l~~----~~~~~~~i~~d~~~~~~ 192 (334)
T PRK13055 142 GGSLTELTYSVPSQ--------LKSMFGYLAYLAKGAELLPR----VSPVPVRITYDEGVFEG 192 (334)
T ss_pred hccchHHHHhcCHH--------HHhhccHHHHHHHHHHHHHh----cCCeeEEEEECCEEEEE
Confidence 99999999776532 23567999999999998874 67899999999986543
No 7
>PRK13057 putative lipid kinase; Reviewed
Probab=99.96 E-value=1.3e-28 Score=254.84 Aligned_cols=176 Identities=23% Similarity=0.256 Sum_probs=143.2
Q ss_pred EEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC--CCCeEEEEcCcchHHHHHHHHHhcCCCCC
Q 007781 367 LVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV--PHFRVLVCGGDGTVGWVLNAIDKQNFVSP 443 (590)
Q Consensus 367 lVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~--~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~ 443 (590)
+||+||.||+++ +.+.+++..|..... +++..|+.++++.+++++. ..+.|+|+||||||++|+|+|.. .+
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~----~~ 74 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVE----TG 74 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhc----CC
Confidence 479999999876 456777777765432 4555577788888888764 35789999999999999999975 46
Q ss_pred CCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEecchhHH
Q 007781 444 PPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVGCDAK 523 (590)
Q Consensus 444 ~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~siG~DA~ 523 (590)
+||||||+||||||||.||++. ++.++++.+..+..+.+|.+++ +.+||+|++|+|+||+
T Consensus 75 ~~lgiiP~GT~Ndfar~Lg~~~---------~~~~a~~~i~~~~~~~vD~g~~-----------~~~~f~n~~g~G~da~ 134 (287)
T PRK13057 75 LPLGILPLGTANDLARTLGIPL---------DLEAAARVIATGQVRRIDLGWV-----------NGHYFFNVASLGLSAE 134 (287)
T ss_pred CcEEEECCCCccHHHHHcCCCC---------CHHHHHHHHHcCCeEEeeEEEE-----------CCEEEEEEEecCccHH
Confidence 8999999999999999999863 4677788888888888998665 2479999999999999
Q ss_pred HhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEE
Q 007781 524 VALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEV 580 (590)
Q Consensus 524 Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~ 580 (590)
|+.+++... ++.+|+++|++.+++.++. ..++.++|++||+.++.
T Consensus 135 v~~~~~~~~--------k~~~G~~aY~~~~~~~l~~----~~~~~~~l~~d~~~~~~ 179 (287)
T PRK13057 135 LARRLTKEL--------KRRWGTLGYAIAALRVLRR----SRPFTAEIEHDGRTERV 179 (287)
T ss_pred HHHHhhHHh--------hccCChhHHHHHHHHHHhh----CCCeEEEEEECCEEEEE
Confidence 998876321 3457999999999998874 57899999999987764
No 8
>PRK13059 putative lipid kinase; Reviewed
Probab=99.96 E-value=1.3e-28 Score=256.13 Aligned_cols=183 Identities=22% Similarity=0.184 Sum_probs=140.0
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
+++++||+||.||++++.+.++.++..|..... +.+..+....+. +.++++ ..+.|+++|||||||+|+|+|...
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~ 79 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKKL 79 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHhc
Confidence 357899999999999877777777777754331 122122222222 233332 357899999999999999999864
Q ss_pred CCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEec
Q 007781 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (590)
Q Consensus 439 ~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~si 518 (590)
+ .++||||||+||||||||.||++. ++.++++.+..+..+.+|.+++ +.+||+|++|+
T Consensus 80 ~--~~~~lgviP~GTgNdfAr~lgi~~---------~~~~a~~~i~~g~~~~vDlg~v-----------~~~~f~n~~~~ 137 (295)
T PRK13059 80 N--IDLPIGILPVGTANDFAKFLGMPT---------DIGEACEQILKSKPKKVDLGKI-----------NDKYFINVAST 137 (295)
T ss_pred C--CCCcEEEECCCCHhHHHHHhCCCC---------CHHHHHHHHHhCCcEEeeEEEE-----------CCEEEEEEEee
Confidence 3 458999999999999999999863 4777788888888899998665 24799999999
Q ss_pred chhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEE
Q 007781 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEV 580 (590)
Q Consensus 519 G~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~ 580 (590)
|+||+|+..++.. .++.+|+++|++.+++.++. +++++++|++||+.++.
T Consensus 138 G~~a~v~~~~~~~--------~k~~~G~~aY~~~~~~~l~~----~~~~~~~i~~d~~~~~~ 187 (295)
T PRK13059 138 GLFTDVSQKTDVN--------LKNTIGKLAYYLKGLEELPN----FRKLKVKVTSEEVNFDG 187 (295)
T ss_pred eechhhhhhccHH--------HhhCcchHHHHHHHHHHHhc----CCCeeEEEEECCEEEEe
Confidence 9999999876521 13567999999999998873 56899999999987764
No 9
>PRK13337 putative lipid kinase; Reviewed
Probab=99.96 E-value=1.3e-28 Score=257.07 Aligned_cols=184 Identities=21% Similarity=0.274 Sum_probs=147.3
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
++++++|+||+||++++.+.+..+...|....+ +++..|+.++++.++++++ +.+.||++||||||++|+|+|...
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~ 80 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEK 80 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhC
Confidence 367999999999998877777777766665443 5555677888898888765 357899999999999999999754
Q ss_pred CCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEec
Q 007781 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (590)
Q Consensus 439 ~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~si 518 (590)
+ ..+||||||.||||||||.||++. ++.++++.+..+..+.+|.+.+ +.++|+|.+|+
T Consensus 81 ~--~~~~lgiiP~GT~NdfAr~lgi~~---------~~~~a~~~i~~g~~~~vDlg~v-----------n~~~fln~~g~ 138 (304)
T PRK13337 81 E--NRPKLGIIPVGTTNDFARALHVPR---------DIEKAADVIIEGHTVPVDIGKA-----------NNRYFINIAGG 138 (304)
T ss_pred C--CCCcEEEECCcCHhHHHHHcCCCC---------CHHHHHHHHHcCCeEEEEEEEE-----------CCEEEEeeehh
Confidence 2 358999999999999999999863 3677778888888888887654 34799999999
Q ss_pred chhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEE
Q 007781 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEV 580 (590)
Q Consensus 519 G~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~ 580 (590)
|+||+|+.++.. + .++.+|+++|++.+++.++. .++++++|++||+.++.
T Consensus 139 G~~a~v~~~~~~-~-------~k~~~G~~aY~~~~~~~l~~----~~~~~~~i~~d~~~~~~ 188 (304)
T PRK13337 139 GRLTELTYEVPS-K-------LKTMLGQLAYYLKGIEMLPS----LKATDVRIEYDGKLFQG 188 (304)
T ss_pred hHHHHHHHhcCH-H-------HhcCcccHHHHHHHHHHHhh----CCCceEEEEECCeEEEe
Confidence 999999976642 1 24568999999999987763 57889999999987653
No 10
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=99.96 E-value=5.8e-28 Score=251.67 Aligned_cols=185 Identities=25% Similarity=0.368 Sum_probs=152.4
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
++++.+|+||.||++.+.+.++.++..|..... +.+..++.+++|.++++++ +.+.|+++|||||||+|+|+|.+.
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~ 81 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGT 81 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcC
Confidence 578999999999999999999999888876433 3344455668899988885 468899999999999999999975
Q ss_pred CCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCc-EEEEEEe
Q 007781 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPK-FLNNYLG 517 (590)
Q Consensus 439 ~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~-~f~N~~s 517 (590)
+. +||||||+||+|||||+|||+. .++.++++.+.++..+.+|.+. .+.+ ||+|.+|
T Consensus 82 ~~---~~LgilP~GT~NdfAr~Lgip~--------~~~~~Al~~i~~g~~~~vDlg~-----------~~~~~~fin~a~ 139 (301)
T COG1597 82 DD---PPLGILPGGTANDFARALGIPL--------DDIEAALELIKSGETRKVDLGQ-----------VNGRRYFINNAG 139 (301)
T ss_pred CC---CceEEecCCchHHHHHHcCCCc--------hhHHHHHHHHHcCCeEEEeehh-----------cCCcceEEEEee
Confidence 42 2399999999999999999973 2478889999988888888752 2344 9999999
Q ss_pred cchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEEc
Q 007781 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVP 581 (590)
Q Consensus 518 iG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~~ 581 (590)
+|++|+++.+.+..| ++.+|.++|++.+++.+. +..++.++|++|++.++..
T Consensus 140 ~G~~a~~~~~~~~~~--------k~~~g~~~y~~~~~~~l~----~~~~~~~~i~~d~~~~~~~ 191 (301)
T COG1597 140 IGFDAEVVAAVEEER--------KKGFGRLAYALAGLAVLA----RLKPFRIEIEYDGKTFEGE 191 (301)
T ss_pred cchhHHHHHhhcHHH--------HhccchHHHHHHHHHhcc----ccCCCcEEEEEcCcEEEEE
Confidence 999999999987654 245799999999998765 3689999999999988754
No 11
>PRK13054 lipid kinase; Reviewed
Probab=99.95 E-value=1.1e-27 Score=249.58 Aligned_cols=183 Identities=19% Similarity=0.135 Sum_probs=143.2
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
++++++|+||++++. +.+..+...|....+ +++..|+.++++.++++++ ..+.||++|||||||+|+|+|...
T Consensus 3 ~~~~~~i~N~~~~~~---~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~ 79 (300)
T PRK13054 3 FPKSLLILNGKSAGN---EELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL 79 (300)
T ss_pred CceEEEEECCCccch---HHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh
Confidence 578999999998642 344445555554332 5556677788888888764 357899999999999999999864
Q ss_pred CCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCc-EEEEEEe
Q 007781 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPK-FLNNYLG 517 (590)
Q Consensus 439 ~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~-~f~N~~s 517 (590)
.....+||||||+||||||||+||++. ++.++++.+..+....+|.+.+. .+ ||+|.+|
T Consensus 80 ~~~~~~~lgiiP~GTgNdfar~lgi~~---------~~~~a~~~i~~g~~~~iDlg~v~-----------~~~~f~n~~~ 139 (300)
T PRK13054 80 EGDARPALGILPLGTANDFATAAGIPL---------EPDKALKLAIEGRAQPIDLARVN-----------DRTYFINMAT 139 (300)
T ss_pred ccCCCCcEEEEeCCcHhHHHHhcCCCC---------CHHHHHHHHHhCCceEEEEEEEc-----------CceEEEEEee
Confidence 323468999999999999999999863 46778888888888999987652 34 9999999
Q ss_pred cchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEE
Q 007781 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEV 580 (590)
Q Consensus 518 iG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~ 580 (590)
+||||+|+.+.++. .++.+|+++|++.+++.++. +++++++|+.||+.++.
T Consensus 140 ~G~~a~v~~~~~~~--------~k~~~G~~~Y~~~~l~~l~~----~~~~~~~i~~d~~~~~~ 190 (300)
T PRK13054 140 GGFGTRVTTETPEK--------LKAALGGVAYLIHGLMRMDT----LKPDRCEIRGPDFHWQG 190 (300)
T ss_pred cchhHHHHHhhHHH--------HHhccchHHHHHHHHHHHhh----CCCeEEEEEeCCcEEEe
Confidence 99999999876531 23568999999999998873 67899999999977653
No 12
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=99.95 E-value=1.1e-27 Score=248.85 Aligned_cols=181 Identities=18% Similarity=0.143 Sum_probs=139.6
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhcCC
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQNF 440 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~~~ 440 (590)
++++|+||+||..+ .+..+.+.|....+ +++..|+.++++.++++++ +.+.|+|+|||||||+|+|+|...+.
T Consensus 1 ~~~~I~N~~~~~~~---~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~ 77 (293)
T TIGR03702 1 KALLILNGKQADNE---DVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRD 77 (293)
T ss_pred CEEEEEeCCccchh---HHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCC
Confidence 37899999988433 34444455554433 4555577788888888764 35789999999999999999986432
Q ss_pred CCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEecch
Q 007781 441 VSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVGC 520 (590)
Q Consensus 441 ~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~siG~ 520 (590)
...+||||||+||||||||+||++. ++.++++.+..+..+.+|.+.+. + .+||+|.+|+||
T Consensus 78 ~~~~~lgiiP~GTgNdfAr~l~ip~---------~~~~a~~~i~~g~~~~iDlg~v~-----~-----~~~f~n~~~~G~ 138 (293)
T TIGR03702 78 DAAPALGLLPLGTANDFATAAGIPL---------EPAKALKLALNGAAQPIDLARVN-----G-----KHYFLNMATGGF 138 (293)
T ss_pred CCCCcEEEEcCCchhHHHHhcCCCC---------CHHHHHHHHHhCCceeeeEEEEC-----C-----ccEEEEEeeccc
Confidence 2357899999999999999999863 46777888888888999986652 1 269999999999
Q ss_pred hHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEE
Q 007781 521 DAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIE 579 (590)
Q Consensus 521 DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~ 579 (590)
||+|+.+++.. .++.+|+++|++++++.+++ +++++++++.|+++++
T Consensus 139 da~v~~~~~~~--------~k~~~G~~aY~~~~l~~l~~----~~~~~~~i~~~~~~~~ 185 (293)
T TIGR03702 139 GTRVTTETSEK--------LKKALGGAAYLITGLTRFSE----LTAASCEFRGPDFHWE 185 (293)
T ss_pred chHhhhhhhHH--------HHhccchHHHHHHHHHHHhh----CCCeEEEEEECCEEEE
Confidence 99999887642 23568999999999998873 5678899999887654
No 13
>PRK12361 hypothetical protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=265.87 Aligned_cols=182 Identities=19% Similarity=0.244 Sum_probs=149.4
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhcC
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQN 439 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~~ 439 (590)
.++++||+||+||++++.+.++++++.|...--+++..|+.++++.++++++ +.+.|+|+||||||++|+|++..
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l~~-- 319 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASELVN-- 319 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHhc--
Confidence 5789999999999999988899998888764124555677778888888775 34789999999999999999975
Q ss_pred CCCCCCEEEeccCCCCchhhhh-ccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEec
Q 007781 440 FVSPPPVAILPAGTGNDLARVL-FWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (590)
Q Consensus 440 ~~~~~plgILPlGTGNDfAR~L-g~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~si 518 (590)
.++||||||+||||||||+| |++..+ .++.++++.+.++..+.+|.+.+ +.++|+|++|+
T Consensus 320 --~~~~lgiiP~GTgNdfAr~L~gi~~~~------~~~~~a~~~i~~g~~~~iD~g~v-----------n~~~fln~agi 380 (547)
T PRK12361 320 --TDITLGIIPLGTANALSHALFGLGSKL------IPVEQACDNIIQGHTQRIDTARC-----------NDRLMLLLVGI 380 (547)
T ss_pred --CCCCEEEecCCchhHHHHHhcCCCCCC------ccHHHHHHHHHhCCCeEEEEEEE-----------cCeEEEEEEee
Confidence 46899999999999999999 886311 24677888888888899998654 35799999999
Q ss_pred chhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEE
Q 007781 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTE 577 (590)
Q Consensus 519 G~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~ 577 (590)
|+||+|+.+.++.+ |+.+|+++|+..+++.+.. +++++++|++||++
T Consensus 381 G~da~v~~~~~~~~--------k~~~G~laY~~~~~~~l~~----~~~~~l~i~~dg~~ 427 (547)
T PRK12361 381 GFEQKMIESADRER--------KNALGQLAYLDGLWRAVNE----NETLTLTVTLDDAE 427 (547)
T ss_pred chhHHHHHhccHHH--------HhccCHHHHHHHHHHHhhc----CCCeeEEEEECCCC
Confidence 99999998776422 3568999999999988874 67899999999974
No 14
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=99.95 E-value=5.3e-27 Score=243.24 Aligned_cols=184 Identities=19% Similarity=0.249 Sum_probs=144.8
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
+++++||+||.||++.+.+.++++.+.|...++ +.+..++.++++.+++++. +.+.|+++|||||+++|+|+|...
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~ 80 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQL 80 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcC
Confidence 468999999999998888888888887765443 4444455565555555432 357899999999999999999753
Q ss_pred CCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcE-EEEEEe
Q 007781 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKF-LNNYLG 517 (590)
Q Consensus 439 ~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~-f~N~~s 517 (590)
. ..|||||||+||+|||||.||++. ++.++++.+.++..+.+|.+.+ +.++ |+|++|
T Consensus 81 ~--~~~~lgiiP~Gt~N~~a~~l~i~~---------~~~~~~~~l~~~~~~~~Dlg~v-----------~~~~~fln~~g 138 (293)
T TIGR00147 81 D--DIPALGILPLGTANDFARSLGIPE---------DLDKAAKLVIAGDARAIDMGQV-----------NKQYCFINMAG 138 (293)
T ss_pred C--CCCcEEEEcCcCHHHHHHHcCCCC---------CHHHHHHHHHcCCceEEEEEEE-----------CCeEEEEEEEe
Confidence 2 347999999999999999999862 4667778888888888887654 3478 999999
Q ss_pred cchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEE
Q 007781 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEV 580 (590)
Q Consensus 518 iG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~ 580 (590)
+|+||+++.+++.. .++.+|+++|++++++.++ ++++++++|++||+.++.
T Consensus 139 ~G~~a~v~~~~~~~--------~k~~~g~~~Y~~~~l~~l~----~~~~~~~~i~~d~~~~~~ 189 (293)
T TIGR00147 139 GGFGTEITTETPEK--------LKAALGSLSYILSGLMRMD----TLQPFRCEIRGEGEHWQG 189 (293)
T ss_pred echhhHhHhhCCHH--------HHhccchHHHHHHHHHHHh----hCCCeeEEEEECCeEEEe
Confidence 99999998776421 2456799999999998876 367889999999998764
No 15
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=99.94 E-value=2e-26 Score=253.88 Aligned_cols=182 Identities=20% Similarity=0.238 Sum_probs=143.4
Q ss_pred CCCCcEEEEEcCCCCCCChhHHHH-HHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHH
Q 007781 361 PDARPLLVFINKKSGAQRGDSLRQ-RLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 361 ~~~~~llVivNPkSG~~~g~~~~~-~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L 435 (590)
..+++++||+||.||++++.+++. .++.+|....+ +++..|+.+++|.++++++ .++.||++|||||||||+|+|
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 356899999999999999887764 68878876554 5677788999999998875 357899999999999999999
Q ss_pred HhcCC---CCCCCEEEeccCCCCchhhhh----ccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCC
Q 007781 436 DKQNF---VSPPPVAILPAGTGNDLARVL----FWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEP 508 (590)
Q Consensus 436 ~~~~~---~~~~plgILPlGTGNDfAR~L----g~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~ 508 (590)
..... ...+||||||+||||||||+| |++. ++.+++..|..+....+|.+.+.. + .
T Consensus 189 ~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~---------~~~~A~~~I~~g~~~~vDlg~v~~----~----~ 251 (481)
T PLN02958 189 LEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPC---------SATNAVLAIIRGHKCSLDVATILQ----G----E 251 (481)
T ss_pred hhCccccccccCceEEecCcCcchhhhhhccccCCCc---------CHHHHHHHHHcCCceEEeEEEEEc----C----C
Confidence 85421 235899999999999999999 7652 466777778889999999988752 1 1
Q ss_pred CcE-EEEEEecchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEE
Q 007781 509 PKF-LNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVV 573 (590)
Q Consensus 509 ~~~-f~N~~siG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~v 573 (590)
.++ ++|.+|+||||+|....+. +|++|+++|.+++++.++. .+++.++|++
T Consensus 252 ~~~f~vn~~g~GfdAdV~~~se~----------kr~lG~lrY~~~~l~~l~~----~r~y~~~I~~ 303 (481)
T PLN02958 252 TKFFSVLMLAWGLVADIDIESEK----------YRWMGSARLDFYGLQRILC----LRQYNGRISF 303 (481)
T ss_pred ceEEEEEeeeeehhhhhhccccc----------ccccchHHHHHHHHHHHHh----cCCcceEEEE
Confidence 234 4799999999999654321 3457999999999999884 4566666663
No 16
>PLN02204 diacylglycerol kinase
Probab=99.93 E-value=3.7e-25 Score=244.24 Aligned_cols=197 Identities=19% Similarity=0.230 Sum_probs=154.7
Q ss_pred CCCCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC------CCCeEEEEcCcchHHHHHH
Q 007781 361 PDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV------PHFRVLVCGGDGTVGWVLN 433 (590)
Q Consensus 361 ~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~------~~~~Vvv~GGDGTV~~Vln 433 (590)
.++++++|||||.||++++.+.++.+..+|....+ +++..|+.+++|.++++.+ .++.||++|||||+|||+|
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlN 236 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILN 236 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHH
Confidence 45789999999999999999999999999876655 5667788899999887542 3578999999999999999
Q ss_pred HHHhcCC----------------------------------------------------------------------CCC
Q 007781 434 AIDKQNF----------------------------------------------------------------------VSP 443 (590)
Q Consensus 434 ~L~~~~~----------------------------------------------------------------------~~~ 443 (590)
+|..... ...
T Consensus 237 GL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (601)
T PLN02204 237 GYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNER 316 (601)
T ss_pred HHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 9973210 134
Q ss_pred CCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEcc--CCcccCCCcEEEEEEecchh
Q 007781 444 PPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQ--QGKLLEPPKFLNNYLGVGCD 521 (590)
Q Consensus 444 ~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~--~G~~~~~~~~f~N~~siG~D 521 (590)
++|||||+|||||||+.+..+ .++.+.+..|..+..+.||..++.-... ........+||+|++|+||+
T Consensus 317 ~~lGIIPaGSgN~~a~~~~g~---------~dp~taa~~Ii~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s~ag~Gf~ 387 (601)
T PLN02204 317 FRFGIIPAGSTDAIVMCTTGE---------RDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFY 387 (601)
T ss_pred ceEEEECCccHHHHHHHccCC---------CCHHHHHHHHHhCCCeEeeEEEEecccccccccccccceEEEEEeecchH
Confidence 789999999999999888643 2466667778889999999988853210 00001124899999999999
Q ss_pred HHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEE
Q 007781 522 AKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEV 580 (590)
Q Consensus 522 A~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~ 580 (590)
|+|+.+.+++ |.+|+++|.+++++.|++ ++.+.++|.+|++..+.
T Consensus 388 gdVi~esek~----------R~mG~~rY~~~g~k~~~~----~r~y~~~V~~d~~~~~~ 432 (601)
T PLN02204 388 GDVISESEKY----------RWMGPKRYDYAGTKVFLK----HRSYEAEVAYLETESEK 432 (601)
T ss_pred HHHHHHhhhh----------cccchHHHHHHHHHHHHh----CCCceEEEEECCeEeee
Confidence 9999775432 458999999999999984 67899999999987664
No 17
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.86 E-value=2.8e-21 Score=176.31 Aligned_cols=100 Identities=61% Similarity=1.096 Sum_probs=81.7
Q ss_pred EEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhCC-CCeEEEEcCcchHHHHHHHHHhcCCCC-CC
Q 007781 367 LVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVP-HFRVLVCGGDGTVGWVLNAIDKQNFVS-PP 444 (590)
Q Consensus 367 lVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~-~~~Vvv~GGDGTV~~Vln~L~~~~~~~-~~ 444 (590)
+||+||+||++++.++++.++..+.+.+++... +...+++.+++++.. ++.|+++|||||+++|+|+|.+..... .+
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~-~~~~~~~~~~~~~~~~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~ 79 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLT-KKGPAAALVIFRDLPKFDRVLVCGGDGTVGWVLNALDKRELPLPEP 79 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEe-cCChHHHHHHHhhcCcCCEEEEEccccHHHHHHHHHHhcccccCCC
Confidence 589999999999989999999999888876544 345666777777664 458999999999999999998653211 28
Q ss_pred CEEEeccCCCCchhhhhccCCCC
Q 007781 445 PVAILPAGTGNDLARVLFWGGGL 467 (590)
Q Consensus 445 plgILPlGTGNDfAR~Lg~g~g~ 467 (590)
||||||+||||||||+|||+...
T Consensus 80 plgiiP~GTgNdfar~lgi~~~~ 102 (124)
T smart00046 80 PVAVLPLGTGNDLARSLGWGGGY 102 (124)
T ss_pred cEEEeCCCChhHHHHHcCCCCCc
Confidence 99999999999999999998643
No 18
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.85 E-value=4.5e-21 Score=208.42 Aligned_cols=189 Identities=24% Similarity=0.315 Sum_probs=148.4
Q ss_pred CCCCcEEEEEcCCCCCCChhHHH-HHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHH
Q 007781 361 PDARPLLVFINKKSGAQRGDSLR-QRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 361 ~~~~~llVivNPkSG~~~g~~~~-~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L 435 (590)
+..++++|||||.+|++++.+++ ..++.+|....+ |++..|.+|.||.++++.. .++.||++||||+++||||||
T Consensus 177 ~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGL 256 (579)
T KOG1116|consen 177 KRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGL 256 (579)
T ss_pred CCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCHHHhhhcc
Confidence 35789999999999999998776 457788877776 8888899999999999986 368899999999999999999
Q ss_pred HhcCC---CCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEE
Q 007781 436 DKQNF---VSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFL 512 (590)
Q Consensus 436 ~~~~~---~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f 512 (590)
..... ....|||+||+||||+||+++.|-.|+. -.+...+ .+.++..+.+|...+... ++ ...|+
T Consensus 257 l~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~-----~~~~a~l-~iirg~~t~~dv~~v~~~---~~---~~~fS 324 (579)
T KOG1116|consen 257 LERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPD-----LPLLATL-LIIRGRLTPMDVSVVEYA---GK---DRHFS 324 (579)
T ss_pred ccccchhhHhcCceeEeecCCccHHHHHhhcccCcc-----cchHHHH-HHHccCCCchheeehhhc---cC---cceEE
Confidence 87642 2468999999999999999999976531 1233334 345577788888766543 21 23788
Q ss_pred EEEEecchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECC
Q 007781 513 NNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDG 575 (590)
Q Consensus 513 ~N~~siG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG 575 (590)
++.+++||.|+|..+.++.| .+|.+.|.+.++..++. .+.++.+|+...
T Consensus 325 fLs~~wGlIADiDI~SEk~R----------~mG~~Rf~lg~~~rl~~----lr~Y~gri~ylp 373 (579)
T KOG1116|consen 325 FLSAAWGLIADVDIESEKYR----------WMGPARFTLGAFLRLIQ----LRKYKGRIEYLP 373 (579)
T ss_pred EEeeeeeeEEecccchHHHH----------hhcchhhhHHHHHHHHh----ccCCCceEEEec
Confidence 99999999999998877655 48999999999988874 344556666543
No 19
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.84 E-value=1.5e-20 Score=172.45 Aligned_cols=99 Identities=34% Similarity=0.460 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCc-EEEEeccCCchHHHHHHH--hC-CC-CeEEEEcCcchHHHHHHHHHhcC
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQ-VVELSSTQGPEVGLFLFR--KV-PH-FRVLVCGGDGTVGWVLNAIDKQN 439 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~q-V~~l~~t~~p~~a~~l~~--~~-~~-~~Vvv~GGDGTV~~Vln~L~~~~ 439 (590)
+++||+||+||++++. ++.+++.|.... -+++..++..+++.++.+ +. .. +.|+++||||||++|+|++....
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~ 78 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSD 78 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTST
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcC
Confidence 5899999999999987 244544443221 133333444555555543 33 34 68999999999999999998865
Q ss_pred CCCCCCEEEeccCCCCchhhhhccCC
Q 007781 440 FVSPPPVAILPAGTGNDLARVLFWGG 465 (590)
Q Consensus 440 ~~~~~plgILPlGTGNDfAR~Lg~g~ 465 (590)
....+||||||+||||||||+||++.
T Consensus 79 ~~~~~~l~iiP~GT~N~~ar~lg~~~ 104 (130)
T PF00781_consen 79 REDKPPLGIIPAGTGNDFARSLGIPS 104 (130)
T ss_dssp SSS--EEEEEE-SSS-HHHHHTT--S
T ss_pred CCccceEEEecCCChhHHHHHcCCCC
Confidence 44467999999999999999999874
No 20
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.80 E-value=5.7e-21 Score=199.22 Aligned_cols=124 Identities=18% Similarity=0.336 Sum_probs=103.8
Q ss_pred hccCC-CccCCCCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCc
Q 007781 65 SKKNP-KTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (590)
Q Consensus 65 ~k~~~-~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck 141 (590)
.||.+ +.+..+.+..|.|.+.+|. |||||++|.++||| +||+ ||++|.++||++|++++...|.
T Consensus 30 ~RkGAlrqKnvhevk~HkF~aRFFK--qPTfCsHCkDFiwGfgKQGf-----------QCqvC~fvvHkrChefVtF~CP 96 (683)
T KOG0696|consen 30 LRKGALRQKNVHEVKSHKFIARFFK--QPTFCSHCKDFIWGFGKQGF-----------QCQVCCFVVHKRCHEFVTFSCP 96 (683)
T ss_pred Hhhhhhhhcchhhhccceeeehhcc--CCchhhhhhhheeccccCce-----------eeeEEeehhhhhhcceEEEECC
Confidence 34444 4445567899999999997 99999999999995 7774 9999999999999999999998
Q ss_pred cceec---CccceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 142 CVSMI---GFEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 142 ~~~~~---~~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
..-.. ......|.|.. ++|.+++||++||..+++... ||.+|.-|.++||.+|..++++.
T Consensus 97 Gadkg~dtDdpr~kHkf~~------~tYssPTFCDhCGsLLyGl~H---QGmKC~~C~mNVH~rCv~nVPsl 159 (683)
T KOG0696|consen 97 GADKGPDTDDPRSKHKFKI------HTYSSPTFCDHCGSLLYGLIH---QGMKCDTCDMNVHHRCVENVPSL 159 (683)
T ss_pred CCCCCCCCCCcccccceee------eecCCCchhhhHHHHHHHHHh---cccccccccchHHHHHhhcCCcc
Confidence 76421 22357899987 489999999999988877553 57999999999999999999976
No 21
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.59 E-value=3.7e-15 Score=155.16 Aligned_cols=195 Identities=21% Similarity=0.291 Sum_probs=142.9
Q ss_pred HhhhcceeccCCCCCCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhCC------CCeEEE
Q 007781 349 QLKQKYELIDMPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKVP------HFRVLV 421 (590)
Q Consensus 349 ~~~~~~~~~~~p~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~~------~~~Vvv 421 (590)
-+...+-++..-++++.++|||||.+|+++|.++++.+..++--..| +++..|+.+.+|.+.+.+.+ +|-||+
T Consensus 144 ~~~l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~~~ei~~~~~~~yDGiv~ 223 (516)
T KOG1115|consen 144 MDQLNYSLIKEVERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDVMAEIQNKELHTYDGIVA 223 (516)
T ss_pred HHHHHHHHHHHhcCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhhhhhCCHhhhhhcccEEE
Confidence 33344555556677899999999999999999999998877543334 66777889999998877653 467999
Q ss_pred EcCcchHHHHHHHHHhc-----C----------CCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhc
Q 007781 422 CGGDGTVGWVLNAIDKQ-----N----------FVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHA 486 (590)
Q Consensus 422 ~GGDGTV~~Vln~L~~~-----~----------~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a 486 (590)
+||||-.||+|+|+.-. + ....+.+||||+|++|-..-+.- | ..|+ ...+|. |.-+
T Consensus 224 VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~---g--t~D~---~TSAlH-I~lG 294 (516)
T KOG1115|consen 224 VGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTT---G--TRDP---VTSALH-IILG 294 (516)
T ss_pred ecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEec---c--CCcc---ccceee-eEec
Confidence 99999999999998642 1 12357899999999999876653 1 1122 233332 3346
Q ss_pred cceEeeeEEEEEEccCCcccCCCcEEEEEEecchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCC
Q 007781 487 AVTILDRWKVAILNQQGKLLEPPKFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFP 566 (590)
Q Consensus 487 ~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~siG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~ 566 (590)
....+|...+.-. ++ --||-.|.+|.||.++|..+.+++|+ +|..+|-++|++.+++ .+.
T Consensus 295 ~~l~vDVctVht~---~k---LiRysaSa~gYGFyGDvl~dSEKYRW----------mGp~RYDfsglKtflk----H~~ 354 (516)
T KOG1115|consen 295 RKLFVDVCTVHTI---EK---LIRYSASAAGYGFYGDVLSDSEKYRW----------MGPKRYDFSGLKTFLK----HRS 354 (516)
T ss_pred cceeeeeeeeeec---ch---heeeehhhhcccccchhhhhhhhhhc----------cCchhhhhHHHHHHHh----ccc
Confidence 6677887766532 22 24788999999999999999887664 7888999999999985 444
Q ss_pred eEEEEE
Q 007781 567 WQVRVV 572 (590)
Q Consensus 567 ~~v~l~ 572 (590)
+.-+|.
T Consensus 355 YegeVs 360 (516)
T KOG1115|consen 355 YEGEVS 360 (516)
T ss_pred cceEEE
Confidence 444443
No 22
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.57 E-value=1.8e-15 Score=144.16 Aligned_cols=80 Identities=38% Similarity=0.748 Sum_probs=76.1
Q ss_pred EEEEEEecchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEEccceeEEEeC
Q 007781 511 FLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEVGTELVLI 590 (590)
Q Consensus 511 ~f~N~~siG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~~~~~e~i~~~ 590 (590)
+|+||||||+||+|+++||+.|+++|++|++|+.||++|+..|+++++...++.++..+++++||+++++|..+++||||
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~~dg~~~~lp~~~~~iv~l 80 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELEVDGKEVDLPSSLESIVFL 80 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcccccCCeeEeeecceeEEEEE
Confidence 48999999999999999999999999999999999999999999999977778888999999999999999889999986
No 23
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.46 E-value=1.1e-14 Score=161.12 Aligned_cols=119 Identities=18% Similarity=0.305 Sum_probs=99.8
Q ss_pred CccCCCCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCcccee-c
Q 007781 70 KTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSM-I 146 (590)
Q Consensus 70 ~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~-~ 146 (590)
..+..+.+.+|.|.++++. ||++|++|.+++|+ +||| ||++|..++|++|+.++.+.|..... .
T Consensus 149 ~~~kVhei~gH~F~aT~l~--Qpt~Cs~C~kFi~gL~kqGy-----------QCqvC~~vvHKkCh~kvv~~C~~~~~~n 215 (694)
T KOG0694|consen 149 SQSKVHEIDGHKFGATSLR--QPTFCSWCQKFIWGLRKQGY-----------QCQVCWRVVHKKCHVKVVTLCDFLDNLN 215 (694)
T ss_pred ccceeEEeeCcEEEEeecc--CcchhhhhhhheeccCCCce-----------EEeeeeehHhhhhHHHHHHhccCcCccC
Confidence 3445577899999999997 99999999999997 8876 99999999999999999999987643 1
Q ss_pred --C-------ccceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 147 --G-------FEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 147 --~-------~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
. .-.++|+++. .|+..++||++|+..+..... ++++|.-|.+++|++|..++++.
T Consensus 216 ~e~q~~~~~~~~~~Phrf~~------~~~q~ptFc~hCGs~L~r~~q---qGlkCs~Cg~n~H~~c~~~va~~ 279 (694)
T KOG0694|consen 216 SEPQGFLFEFTFRNPHRFVK------LNRQRPTFCDHCGSVLYRLRQ---QGLKCSTCGRNVHNRCVENLAPN 279 (694)
T ss_pred cCCccccccccccCCCcchh------hhccCccHHHhcchhhhhhcc---cCeeehhhhccccHHHHHhcccC
Confidence 0 1246798877 488999999999887766443 47999999999999999999865
No 24
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.44 E-value=3.1e-14 Score=157.44 Aligned_cols=136 Identities=28% Similarity=0.537 Sum_probs=104.5
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCccceec---CccceEee
Q 007781 78 APHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMI---GFEHVIHQ 154 (590)
Q Consensus 78 ~~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~~---~~~~~~H~ 154 (590)
..|.|.+.++. +|+||++|.++... +|.+ -.++++|+.|++.||..|+..+.+.|.++... ....+.|.
T Consensus 97 ~~~~~~~~~~~--~~~~c~~c~~~c~~-~~~~-----~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~ 168 (634)
T KOG1169|consen 97 GDHVWRPKHLW--KPAYCFVCPKSCGS-CGVG-----IKQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHP 168 (634)
T ss_pred CceeccCCCCC--CCceEEeccccccc-hhhc-----ccCceeeccccchHHHHHHhhcCcccccccccccccceeecCc
Confidence 57999999886 99999999998731 2221 12456999999999999999999876655322 23567888
Q ss_pred eeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCCCCCCCCCcCCCceeeCCcceeecc
Q 007781 155 WSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICDLGPFRRLILSPLYVKELN 234 (590)
Q Consensus 155 W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~r~~IlPP~~i~~~~ 234 (590)
|+++| .....|+.|.+.+..- .+.++++|.||++.+|++|......+ ||+|+|+++|+||+.+....
T Consensus 169 ~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~c~~~~~~~h~~~~~~~~~~----~~~~~~~~~i~p~~~~~~~~ 235 (634)
T KOG1169|consen 169 WVKGN-------AGEAKCDQCLKSVKAD--QGLTGPRCGWCQIRVHDKCKSELSQE----CDLGELKDHILPPSTLRPAR 235 (634)
T ss_pred ccccc-------cCCccchhhhcccccc--ccccccccceeeeeeecchHHHHhhh----ccChhhhhccCCceeeeccc
Confidence 88853 3467888888874321 11368999999999999999877665 99999999999999987543
No 25
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=99.32 E-value=1.1e-13 Score=148.71 Aligned_cols=114 Identities=25% Similarity=0.472 Sum_probs=95.9
Q ss_pred CCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCcccee-------
Q 007781 75 VPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSM------- 145 (590)
Q Consensus 75 ~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~------- 145 (590)
+-+.+|.....+.. .|+||.+|.|+||| +||+ +|..||...|++|+.++..+|..+..
T Consensus 141 ~~i~PH~l~vhSY~--~PtFCD~CGEmL~GLvrQGl-----------KC~gCglNyHKRCa~kipNNCsG~r~rr~sa~~ 207 (888)
T KOG4236|consen 141 FQIRPHTLFVHSYK--APTFCDFCGEMLFGLVRQGL-----------KCEGCGLNYHKRCAFKIPNNCSGVRKRRLSAVS 207 (888)
T ss_pred eeeecceeeeeccc--CchHHHHHHHHHHHHHHccc-----------cccCCCCcHhhhhhhcCCCCCCcccccCCCCCC
Confidence 34668888887765 89999999999997 7887 99999999999999999999965310
Q ss_pred -cC----------------------cc------------------------------ceEeeeeeeeecccCCCCCCCcc
Q 007781 146 -IG----------------------FE------------------------------HVIHQWSVRWTEITDQPSEASFC 172 (590)
Q Consensus 146 -~~----------------------~~------------------------------~~~H~W~~~~~~~~~n~~~~~~C 172 (590)
.+ +. .++|.+.+ ++|..++.|
T Consensus 208 l~~~~s~~l~~s~~~p~~p~~~~~pst~~~~~~~p~~~~~S~sgrpi~~ek~~~~rvkvPHTf~v------HSY~rpTVC 281 (888)
T KOG4236|consen 208 LQPSRSNRLNLSPSSPLEPLLPARPSTELGGPREPSSAILSWSGRPIWMEKMLMSRVKVPHTFIV------HSYTRPTVC 281 (888)
T ss_pred CCCCCccccccCCCCCCCccccCCCcccccCCCCCCcccccccCCCchhhhhhhhcccCCeeEEE------eeccCchHH
Confidence 00 00 17899988 599999999
Q ss_pred cccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 173 SYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 173 ~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
.+|++.+-+.|. ||++|..|+.++|.+|...+++.
T Consensus 282 q~CkkLLkGL~r---QGlqCkDCk~NcHkrCa~~v~~d 316 (888)
T KOG4236|consen 282 QYCKKLLKGLFR---QGLQCKDCKFNCHKRCAMKVPND 316 (888)
T ss_pred HHHHHHHHHHHh---cCcccccCCcchhhhhhhhcccc
Confidence 999999888775 56999999999999999999876
No 26
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.24 E-value=5.7e-11 Score=124.01 Aligned_cols=171 Identities=20% Similarity=0.289 Sum_probs=111.2
Q ss_pred HHhhhcceeccCCCC--CCcEEEEEcCCCCCCChhH-HHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhCC--CCeEEE
Q 007781 348 LQLKQKYELIDMPPD--ARPLLVFINKKSGAQRGDS-LRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKVP--HFRVLV 421 (590)
Q Consensus 348 ~~~~~~~~~~~~p~~--~~~llVivNPkSG~~~g~~-~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~~--~~~Vvv 421 (590)
....++|...++||. .++++|++||.+.++.... +......+|+-..+ +++.+|+..++|..++..++ .|.|+|
T Consensus 43 a~~aq~~g~t~vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t~~Dii~V 122 (535)
T KOG4435|consen 43 AKIAQKYGETTVPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDTQEDIIYV 122 (535)
T ss_pred HHHHHHhccccCCcccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhccCCCeEEE
Confidence 344577777777764 5789999999887654322 22334455544333 47888888999988888764 588999
Q ss_pred EcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccc---eEeeeEEEEE
Q 007781 422 CGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAV---TILDRWKVAI 498 (590)
Q Consensus 422 ~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~---~~lD~~~v~~ 498 (590)
+|||||+++|+.|+.+.. ....||+++|+|--|--..+.-. .-+.+.|....+.+++..+.+... ..+|.
T Consensus 123 aGGDGT~~eVVTGi~Rrr-~~~~pv~~~P~G~~~l~~~s~l~-~vfe~~d~V~h~~~a~~avikde~ksv~~fdv----- 195 (535)
T KOG4435|consen 123 AGGDGTIGEVVTGIFRRR-KAQLPVGFYPGGYDNLWLKSMLP-SVFENSDDVRHACEAAMAVIKDEKKSVYAFDV----- 195 (535)
T ss_pred ecCCCcHHHhhHHHHhcc-cccCceeeccCccchHhhhhhch-hhhccchHHHHHHHHHHHHhcccccceEEEEe-----
Confidence 999999999999999864 45789999999988764433321 112222333445555555544333 44443
Q ss_pred EccCCcccCCCcEEEEEEecchhHHHhhH
Q 007781 499 LNQQGKLLEPPKFLNNYLGVGCDAKVALD 527 (590)
Q Consensus 499 ~~~~G~~~~~~~~f~N~~siG~DA~Va~~ 527 (590)
.. .|. ...+.|-+|-+++|..-++-..
T Consensus 196 ~~-~gs-~l~P~fgl~glswG~frdi~~~ 222 (535)
T KOG4435|consen 196 TT-EGS-TLAPEFGLGGLSWGWFRDIEDT 222 (535)
T ss_pred cc-CCC-ccccccccCccchhhhhhhhhh
Confidence 21 243 2345566888999987776543
No 27
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=98.75 E-value=4.4e-09 Score=81.53 Aligned_cols=52 Identities=33% Similarity=0.542 Sum_probs=42.0
Q ss_pred CeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCcc
Q 007781 80 HTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (590)
Q Consensus 80 H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~ 142 (590)
|.|....+. +|++|.+|.+.|||.. .++++|+.|++++|++|.+++...|.+
T Consensus 1 H~f~~~~~~--~~~~C~~C~~~i~g~~---------~~g~~C~~C~~~~H~~C~~~~~~~C~~ 52 (53)
T PF00130_consen 1 HHFVPTTFS--KPTYCDVCGKFIWGLG---------KQGYRCSWCGLVCHKKCLSKVPPSCGC 52 (53)
T ss_dssp -EEEEEESS--STEB-TTSSSBECSSS---------SCEEEETTTT-EEETTGGCTSSSBSST
T ss_pred CeEEEccCC--CCCCCcccCcccCCCC---------CCeEEECCCCChHhhhhhhhcCCCCCC
Confidence 899999886 9999999999997511 234699999999999999999998864
No 28
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=98.70 E-value=5.8e-09 Score=99.31 Aligned_cols=79 Identities=35% Similarity=0.668 Sum_probs=64.1
Q ss_pred EEEEEEecchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEEccceeEEEe
Q 007781 511 FLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEVGTELVL 589 (590)
Q Consensus 511 ~f~N~~siG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~~~~~e~i~~ 589 (590)
+|+|++|+||||+|+.+++..|++.|.+++++++|+++|++.++++++...++..+.+++|++||++.++++.+..+++
T Consensus 1 ~~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~v~v 79 (160)
T smart00045 1 VMNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELECDGVDVDLPNSLEGIAV 79 (160)
T ss_pred CccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEECCEeccCCCCccEEEE
Confidence 4899999999999999999888877877778889999999999999875433334568999999998877633555554
No 29
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=98.70 E-value=6.1e-09 Score=79.28 Aligned_cols=48 Identities=38% Similarity=0.620 Sum_probs=43.3
Q ss_pred CeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcC
Q 007781 80 HTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDC 140 (590)
Q Consensus 80 H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~C 140 (590)
|.|....+. +|++|.+|.+.||+ +||| +|+.|++++|++|..++.++|
T Consensus 1 H~f~~~~~~--~~~~C~~C~~~i~~~~~~~~-----------~C~~C~~~~H~~C~~~v~~~C 50 (50)
T cd00029 1 HRFVRKSFF--KPTFCDVCRKSIWGLFKQGL-----------RCSWCKVKCHKKCADKVPPSC 50 (50)
T ss_pred CccEEeeCC--CCCChhhcchhhhcccccee-----------EcCCCCCchhhhhhccCCCCC
Confidence 889998875 89999999999997 5664 999999999999999998877
No 30
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=98.66 E-value=1.7e-08 Score=78.18 Aligned_cols=49 Identities=20% Similarity=0.522 Sum_probs=40.2
Q ss_pred eeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 153 HQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 153 H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
|+|+++ ++..+++|++|++.+++.. .++++|.||++.+|.+|..+++..
T Consensus 1 H~f~~~------~~~~~~~C~~C~~~i~g~~---~~g~~C~~C~~~~H~~C~~~~~~~ 49 (53)
T PF00130_consen 1 HHFVPT------TFSKPTYCDVCGKFIWGLG---KQGYRCSWCGLVCHKKCLSKVPPS 49 (53)
T ss_dssp -EEEEE------ESSSTEB-TTSSSBECSSS---SCEEEETTTT-EEETTGGCTSSSB
T ss_pred CeEEEc------cCCCCCCCcccCcccCCCC---CCeEEECCCCChHhhhhhhhcCCC
Confidence 889885 7788999999999997633 378999999999999999999876
No 31
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=98.55 E-value=3e-08 Score=74.87 Aligned_cols=48 Identities=38% Similarity=0.742 Sum_probs=42.0
Q ss_pred CeeEeeeeCCCCCccccccCCCCCCC-CCCCCcccCCcccccccccccccCCCccccccCcC
Q 007781 80 HTWVLESVSRGKNLNCCVCLKSMSPS-QTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDC 140 (590)
Q Consensus 80 H~w~~~~~~~~~P~~C~vC~~~l~g~-qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~C 140 (590)
|.|....+. +|++|.+|.+.||+. || ++|+.|++++|++|+.++...|
T Consensus 1 H~~~~~~~~--~~~~C~~C~~~i~~~~~~-----------~~C~~C~~~~H~~C~~~v~~~C 49 (49)
T smart00109 1 HHFVERTFK--KPTKCCVCRKSIWGSFQG-----------LRCSWCKVKCHKKCAEKVPQPC 49 (49)
T ss_pred CceEEeccC--CCCCccccccccCcCCCC-----------cCCCCCCchHHHHHHhhcCCCC
Confidence 788888774 899999999999964 35 5999999999999999998876
No 32
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=98.38 E-value=1.9e-07 Score=71.04 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=41.2
Q ss_pred eeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 153 HQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 153 H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
|+|.+. ++..+++|.+|++.+.+. +.++++|.||++.+|.+|..+++..
T Consensus 1 H~f~~~------~~~~~~~C~~C~~~i~~~---~~~~~~C~~C~~~~H~~C~~~v~~~ 49 (50)
T cd00029 1 HRFVRK------SFFKPTFCDVCRKSIWGL---FKQGLRCSWCKVKCHKKCADKVPPS 49 (50)
T ss_pred CccEEe------eCCCCCChhhcchhhhcc---ccceeEcCCCCCchhhhhhccCCCC
Confidence 788874 667789999999998763 2478999999999999999998753
No 33
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=98.27 E-value=5.3e-07 Score=67.99 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=40.0
Q ss_pred eeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 153 HQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 153 H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
|+|... ++..+++|.+|++.+.+.+ ++++|.||++.+|.+|..+++..
T Consensus 1 H~~~~~------~~~~~~~C~~C~~~i~~~~----~~~~C~~C~~~~H~~C~~~v~~~ 48 (49)
T smart00109 1 HHFVER------TFKKPTKCCVCRKSIWGSF----QGLRCSWCKVKCHKKCAEKVPQP 48 (49)
T ss_pred CceEEe------ccCCCCCccccccccCcCC----CCcCCCCCCchHHHHHHhhcCCC
Confidence 678774 5677899999999987643 57999999999999999998753
No 34
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.14 E-value=9.2e-06 Score=84.29 Aligned_cols=111 Identities=15% Similarity=0.044 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEec--cCCchHHHHHH----HhCCCCeEEEEcCcchHHHHHHHHHh
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSS--TQGPEVGLFLF----RKVPHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~--t~~p~~a~~l~----~~~~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
++.||+|+.. ..+.++++++...|...++ +.+.. +....++.... .+.+.+.|+++|||||+.++++ +..
T Consensus 2 ~v~iv~~~~k--~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~-~~~ 78 (277)
T PRK03708 2 RFGIVARRDK--EEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH-KTK 78 (277)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH-hcC
Confidence 5788888744 5566788888877755432 22221 11111111111 1113578999999999999999 654
Q ss_pred cCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeee
Q 007781 438 QNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDR 493 (590)
Q Consensus 438 ~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~ 493 (590)
..+||..||.||. +|...+.. +++..+++++.++....-.+
T Consensus 79 ----~~~pi~gIn~G~l-GFl~~~~~----------~~~~~~l~~i~~g~~~~~~r 119 (277)
T PRK03708 79 ----KDIPILGINMGTL-GFLTEVEP----------EETFFALSRLLEGDYFIDER 119 (277)
T ss_pred ----CCCeEEEEeCCCC-CccccCCH----------HHHHHHHHHHHcCCceEEEe
Confidence 4689999999999 88877742 34777888888775443333
No 35
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.07 E-value=2.7e-05 Score=81.92 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=73.0
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcEEEEeccCCchHHHH-HHHhC--CCCeEEEEcCcchHHHHHHHHHh
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQVVELSSTQGPEVGLF-LFRKV--PHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV~~l~~t~~p~~a~~-l~~~~--~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
++++++|+|| |+....+++..+.+.|.. .+++ +..+.....+.. +.... ..+.|+++|||||+..+++.+..
T Consensus 3 ~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g~~v~-v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~~~~ 79 (305)
T PRK02645 3 LKQVIIAYKA--GSSQAKEAAERCAKQLEARGCKVL-MGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARHLAP 79 (305)
T ss_pred cCEEEEEEeC--CCHHHHHHHHHHHHHHHHCCCEEE-EecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHHhcc
Confidence 5789999999 444555667777766643 3442 222221111111 11222 35789999999999999999864
Q ss_pred cCCCCCCCEEEecc-CCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEE
Q 007781 438 QNFVSPPPVAILPA-GTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAIL 499 (590)
Q Consensus 438 ~~~~~~~plgILPl-GTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~ 499 (590)
..+||..|.+ |+-.=|+..-.. ... .++++++.++......+..+++.
T Consensus 80 ----~~~pv~gin~~G~lGFL~~~~~~---------~~~-~~~l~~i~~g~~~i~~r~~L~~~ 128 (305)
T PRK02645 80 ----HDIPILSVNVGGHLGFLTHPRDL---------LQD-ESVWDRLQEDRYAIERRMMLQAR 128 (305)
T ss_pred ----CCCCEEEEecCCcceEecCchhh---------cch-HHHHHHHHcCCceEEEeeEEEEE
Confidence 4678888998 765555532110 012 56788888877665566555543
No 36
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.70 E-value=0.00026 Score=73.99 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cEEEEeccCCchHHHH-----H--HHhC--CCCeEEEEcCcchHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPEVGLF-----L--FRKV--PHFRVLVCGGDGTVGWV 431 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV~~l~~t~~p~~a~~-----l--~~~~--~~~~Vvv~GGDGTV~~V 431 (590)
++.+.+|.|+.. ....++.+++...|... +++ +.. . ...... . ..+. +.+.|++.|||||+..+
T Consensus 5 ~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g~~v~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~a 79 (292)
T PRK03378 5 FKCIGIVGHPRH--PTALTTHEMLYHWLTSKGYEVI-VEQ-Q-IAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLGA 79 (292)
T ss_pred CCEEEEEEeCCC--HHHHHHHHHHHHHHHHCCCEEE-Eec-c-hhhhcCcccccccchhhcCCCCCEEEEECCcHHHHHH
Confidence 677999999855 44556777777766544 332 221 1 000000 0 0112 24789999999999999
Q ss_pred HHHHHhcCCCCCCCEEEeccCCCC-chhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEE
Q 007781 432 LNAIDKQNFVSPPPVAILPAGTGN-DLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVA 497 (590)
Q Consensus 432 ln~L~~~~~~~~~plgILPlGTGN-DfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~ 497 (590)
+..+... .+.|||.++|| +|...+.. +++.++++++.++....-++..++
T Consensus 80 a~~~~~~------~~Pilgin~G~lGFl~~~~~----------~~~~~~l~~i~~g~~~i~~r~~L~ 130 (292)
T PRK03378 80 ARVLARY------DIKVIGINRGNLGFLTDLDP----------DNALQQLSDVLEGHYISEKRFLLE 130 (292)
T ss_pred HHHhcCC------CCeEEEEECCCCCcccccCH----------HHHHHHHHHHHcCCceEEEEEEEE
Confidence 9988541 35688899999 78776642 357777888877654444444443
No 37
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.60 E-value=7.5e-06 Score=85.14 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=49.8
Q ss_pred CCCCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCccc
Q 007781 73 HKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (590)
Q Consensus 73 ~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~ 143 (590)
..+..++|.|.++.|+ +..+|..|.+.||| .|| |+|..|+..||++|+..+...|-..
T Consensus 124 kly~~ngh~fqakr~n--rr~~c~ic~d~iwglgrqg-----------yrcinckl~vhkkch~~v~~~cg~~ 183 (593)
T KOG0695|consen 124 KLYRANGHLFQAKRFN--RRAYCGICSDRIWGLGRQG-----------YRCINCKLLVHKKCHGLVPLTCGKH 183 (593)
T ss_pred HHHhhcCcchhhhhhc--cceeeeechhhhhhccccc-----------ceeecceeehhhhhcccccchhhhh
Confidence 3455689999999987 77999999999995 555 5999999999999999999988543
No 38
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=2.2e-05 Score=85.79 Aligned_cols=53 Identities=28% Similarity=0.610 Sum_probs=47.8
Q ss_pred CCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCccce
Q 007781 79 PHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVS 144 (590)
Q Consensus 79 ~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~ 144 (590)
+|.|...+.. +||-|-+|.+.|.| +||+ ||..|++.+|++|+.++.++|-...
T Consensus 267 PHTf~vHSY~--rpTVCq~CkkLLkGL~rQGl-----------qCkDCk~NcHkrCa~~v~~dClge~ 321 (888)
T KOG4236|consen 267 PHTFIVHSYT--RPTVCQYCKKLLKGLFRQGL-----------QCKDCKFNCHKRCAMKVPNDCLGEV 321 (888)
T ss_pred CeeEEEeecc--CchHHHHHHHHHHHHHhcCc-----------ccccCCcchhhhhhhhcccccccce
Confidence 5999998775 99999999999886 7887 9999999999999999999998654
No 39
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.33 E-value=4.4e-05 Score=81.50 Aligned_cols=55 Identities=20% Similarity=0.418 Sum_probs=48.5
Q ss_pred CCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCccc
Q 007781 76 PLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (590)
Q Consensus 76 ~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~ 143 (590)
|...|.|.....+ .||||.+|...|+| -||+ +|+.|.+.||.+|+..+..-|-.-
T Consensus 107 pr~kHkf~~~tYs--sPTFCDhCGsLLyGl~HQGm-----------KC~~C~mNVH~rCv~nVPslCG~D 163 (683)
T KOG0696|consen 107 PRSKHKFKIHTYS--SPTFCDHCGSLLYGLIHQGM-----------KCDTCDMNVHHRCVENVPSLCGTD 163 (683)
T ss_pred cccccceeeeecC--CCchhhhHHHHHHHHHhccc-----------ccccccchHHHHHhhcCCcccCCc
Confidence 5678999998776 89999999999987 5775 999999999999999999988643
No 40
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.28 E-value=0.0026 Score=66.76 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=68.2
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cEEEEeccCC---chHHHHHH--HhC--CCCeEEEEcCcchHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQG---PEVGLFLF--RKV--PHFRVLVCGGDGTVGWVLN 433 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV~~l~~t~~---p~~a~~l~--~~~--~~~~Vvv~GGDGTV~~Vln 433 (590)
++.+.||+|+... ...++.+++.+.|... +++ +..+.. +..+.... ... +.+.|++.|||||+..+++
T Consensus 4 ~~~v~iv~~~~k~--~a~e~~~~i~~~L~~~giev~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~ 80 (295)
T PRK01231 4 FRNIGLIGRLGSS--SVVETLRRLKDFLLDRGLEVI-LDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGAAR 80 (295)
T ss_pred CCEEEEEecCCCH--HHHHHHHHHHHHHHHCCCEEE-EecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHHHH
Confidence 5679999998664 4556777777766543 432 221111 11111110 111 3567999999999999999
Q ss_pred HHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEE
Q 007781 434 AIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAI 498 (590)
Q Consensus 434 ~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~ 498 (590)
.+.. ..+||--|..|+-. .-..+ + .+++.++++++.++......+..+++
T Consensus 81 ~~~~----~~~Pvlgin~G~lG-------Fl~~~---~-~~~~~~~l~~~~~g~~~i~~r~~L~~ 130 (295)
T PRK01231 81 ALAR----HNVPVLGINRGRLG-------FLTDI---R-PDELEFKLAEVLDGHYQEEERFLLEA 130 (295)
T ss_pred HhcC----CCCCEEEEeCCccc-------ccccC---C-HHHHHHHHHHHHcCCceEEEEEEEEE
Confidence 8753 35676656666533 21111 1 24577778888776655555555543
No 41
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.27 E-value=0.00089 Score=70.35 Aligned_cols=49 Identities=31% Similarity=0.366 Sum_probs=37.4
Q ss_pred hHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchh
Q 007781 405 EVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 405 ~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfA 458 (590)
++...+++.. +-+.|+++|||||...|++++. .+.||-=||+||-|-+.
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av~-----~~vPvLGipaGvk~~Sg 138 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVAEAVG-----ADVPVLGIPAGVKNYSG 138 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhcc-----CCCceEeeccccceecc
Confidence 3344444443 2367899999999999999983 46788889999999874
No 42
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=96.75 E-value=0.0031 Score=65.73 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=46.8
Q ss_pred CCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeE
Q 007781 415 PHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRW 494 (590)
Q Consensus 415 ~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~ 494 (590)
+.+.|+++|||||+-.++..+.. ..+||-=|+.||-|=|+.. . .+++..++.++.++....-++.
T Consensus 76 ~~D~ii~lGGDGT~L~~~~~~~~----~~~Pilgin~G~lgfl~~~-~----------~~~~~~~l~~~~~g~~~~~~r~ 140 (285)
T PF01513_consen 76 GVDLIIVLGGDGTFLRAARLFGD----YDIPILGINTGTLGFLTEF-E----------PEDIEEALEKILAGEYSIEERM 140 (285)
T ss_dssp CSSEEEEEESHHHHHHHHHHCTT----ST-EEEEEESSSSTSSSSE-E----------GCGHHHHHHHHHHTHCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHhcc----CCCcEEeecCCCccccccC-C----------HHHHHHHHHHHhcCCeEEEEee
Confidence 45789999999999999998764 3578888899986555432 2 1457777888777554444444
Q ss_pred EEE
Q 007781 495 KVA 497 (590)
Q Consensus 495 ~v~ 497 (590)
.++
T Consensus 141 ~l~ 143 (285)
T PF01513_consen 141 RLE 143 (285)
T ss_dssp EEE
T ss_pred eEE
Confidence 333
No 43
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.55 E-value=0.027 Score=58.89 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=64.5
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHH---H-HHhC--CCCeEEEEcCcchHHHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLF---L-FRKV--PHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~---l-~~~~--~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++.||.||.. ...++.+++...|...++ +.+... ....+. . ..+. +.+.|++.|||||+-.++..+
T Consensus 10 ~~~i~ii~~~~~---~~~~~~~~i~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~aa~~~ 84 (287)
T PRK14077 10 IKKIGLVTRPNV---SLDKEILKLQKILSIYKVEILLEKE--SAEILDLPGYGLDELFKISDFLISLGGDGTLISLCRKA 84 (287)
T ss_pred CCEEEEEeCCcH---HHHHHHHHHHHHHHHCCCEEEEecc--hhhhhcccccchhhcccCCCEEEEECCCHHHHHHHHHh
Confidence 677999999963 566778888777754432 112110 000000 0 0111 346799999999998888887
Q ss_pred HhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEE
Q 007781 436 DKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKV 496 (590)
Q Consensus 436 ~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v 496 (590)
.. ..+||--|-+|+ ||. +...+ .+.+.++++++.++.-..-.+-.+
T Consensus 85 ~~----~~~PilGIN~G~-------lGF---Lt~~~-~~~~~~~l~~i~~g~y~ie~r~~L 130 (287)
T PRK14077 85 AE----YDKFVLGIHAGH-------LGF---LTDIT-VDEAEKFFQAFFQGEFEIEKPYML 130 (287)
T ss_pred cC----CCCcEEEEeCCC-------ccc---CCcCC-HHHHHHHHHHHHcCCCeEEEEEEE
Confidence 54 345644456665 443 22112 245777888887765433333333
No 44
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.51 E-value=0.028 Score=59.35 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=68.1
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cEEEEeccCCchHH-----H---------HHHHhC--CCCeEEEEcC
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPEVG-----L---------FLFRKV--PHFRVLVCGG 424 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV~~l~~t~~p~~a-----~---------~l~~~~--~~~~Vvv~GG 424 (590)
++++.+|.|+.. ....++.+.+...|... +++ +......... . ...... +.+.|++.||
T Consensus 5 ~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG 81 (306)
T PRK03372 5 SRRVLLVAHTGR--DEATEAARRVAKQLGDAGIGVR-VLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGG 81 (306)
T ss_pred ccEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEE-EeechhhhhcccccccccccccccccchhhcccCCCEEEEEcC
Confidence 567999988744 44556777777766543 333 2111100000 0 000111 2477999999
Q ss_pred cchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEE
Q 007781 425 DGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKV 496 (590)
Q Consensus 425 DGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v 496 (590)
|||+-.++..+.. ..+||--|.+|+-.=|+.. + .+++.++++++.++.-..-.|-.+
T Consensus 82 DGT~L~aar~~~~----~~~PilGIN~G~lGFL~~~----------~-~~~~~~~l~~i~~g~y~i~~R~~L 138 (306)
T PRK03372 82 DGTILRAAELARA----ADVPVLGVNLGHVGFLAEA----------E-AEDLDEAVERVVDRDYRVEERMTL 138 (306)
T ss_pred CHHHHHHHHHhcc----CCCcEEEEecCCCceeccC----------C-HHHHHHHHHHHHcCCceEEEeeeE
Confidence 9999999888764 3467766888874433332 1 145777888888876555454443
No 45
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=96.46 E-value=0.029 Score=58.75 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cEEEEeccCCch-HHHH---H-HHhC--CCCeEEEEcCcchHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPE-VGLF---L-FRKV--PHFRVLVCGGDGTVGWVLN 433 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV~~l~~t~~p~-~a~~---l-~~~~--~~~~Vvv~GGDGTV~~Vln 433 (590)
++.+++|.|+.. ....++++.+.+.|... +++ +....... ...+ . ..+. ..+.|+++|||||+..+++
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g~~v~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~ 81 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKRGFEVV-FEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTMLGIGR 81 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEE-EecchhhhcCcccccccChhHhccCCCEEEEECCcHHHHHHHH
Confidence 466889988855 34556677777766543 332 22111000 0000 0 0122 3478999999999999999
Q ss_pred HHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEE
Q 007781 434 AIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVA 497 (590)
Q Consensus 434 ~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~ 497 (590)
.+.. ..+||-=|.+|+-.=|+. + + .+.+.++++++.++.-..-.+..+.
T Consensus 82 ~~~~----~~~pilGIn~G~lGFL~~-------~---~-~~~~~~~l~~~~~g~~~i~~r~~L~ 130 (291)
T PRK02155 82 QLAP----YGVPLIGINHGRLGFITD-------I---P-LDDMQETLPPMLAGNYEEEERMLLE 130 (291)
T ss_pred HhcC----CCCCEEEEcCCCcccccc-------C---C-HHHHHHHHHHHHcCCceEEEeEEEE
Confidence 9864 345654466665433331 1 1 1457778888877765554555444
No 46
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.00057 Score=75.87 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=46.4
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCcc
Q 007781 77 LAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (590)
Q Consensus 77 ~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~ 142 (590)
..+|.|..+.|. -|+||.-|+..||| .||+ +|..|++.||.+|.+....+|-.
T Consensus 170 ttphnf~~~t~~--tpt~cyecegllwglarqgl-----------rctqc~vk~hdkc~ell~adclq 224 (1283)
T KOG1011|consen 170 TTPHNFATTTFQ--TPTFCYECEGLLWGLARQGL-----------RCTQCQVKVHDKCRELLSADCLQ 224 (1283)
T ss_pred CCCCceeeeecc--CCchhhhhhhHHHHHhhccc-----------chhhccccHHHHHHHHhhhHHHH
Confidence 458999988875 89999999999997 6765 99999999999999998888754
No 47
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.28 E-value=0.062 Score=56.39 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=65.0
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHH--------HHHH---HhC--CCCeEEEEcCcchHHH
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVG--------LFLF---RKV--PHFRVLVCGGDGTVGW 430 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a--------~~l~---~~~--~~~~Vvv~GGDGTV~~ 430 (590)
++.||+|+.. ....++.+++...|...++ +.+......... .... .+. +.+.|++.|||||+-.
T Consensus 2 ~igii~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L~ 79 (292)
T PRK01911 2 KIAIFGQTYQ--ESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTFLR 79 (292)
T ss_pred EEEEEeCCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcHHHHH
Confidence 4788888744 4455677777776654332 112111000000 0000 122 2478999999999999
Q ss_pred HHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEE
Q 007781 431 VLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAI 498 (590)
Q Consensus 431 Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~ 498 (590)
++..+.. ..+||-=|-+|+ ||.= ...+ .+++.++++++.++.-..-.|-.+++
T Consensus 80 aa~~~~~----~~~PilGIN~G~-------lGFL---t~~~-~~~~~~~l~~i~~g~~~i~~r~~L~~ 132 (292)
T PRK01911 80 TATYVGN----SNIPILGINTGR-------LGFL---ATVS-KEEIEETIDELLNGDYTIEERSLLQL 132 (292)
T ss_pred HHHHhcC----CCCCEEEEecCC-------CCcc---cccC-HHHHHHHHHHHHcCCceEEEEeeEEE
Confidence 8888754 345655466666 4432 2112 24577888888877654444444443
No 48
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.13 E-value=0.056 Score=56.79 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=66.3
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cEEEEeccC-CchHHH-------HH--HHhC--CCCeEEEEcCcchH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQ-GPEVGL-------FL--FRKV--PHFRVLVCGGDGTV 428 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV~~l~~t~-~p~~a~-------~l--~~~~--~~~~Vvv~GGDGTV 428 (590)
+++++||.|+.. ....++.+++...|... +++ +.... .++... .. ..+. ..+.|++.|||||+
T Consensus 5 ~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~ 81 (296)
T PRK04539 5 FHNIGIVTRPNT--PDIQDTAHTLITFLKQHGFTVY-LDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTF 81 (296)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEE-EecccccccchhccccccccccchhhcCcCCCEEEEECCcHHH
Confidence 678999999855 34556777777766543 443 22110 000000 00 0111 24779999999999
Q ss_pred HHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEE
Q 007781 429 GWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVA 497 (590)
Q Consensus 429 ~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~ 497 (590)
-.++..+.. ..+||-=|-+|+ ||.=..+. .+++.+.++++.++.-..-.|..++
T Consensus 82 L~aa~~~~~----~~~PilGIN~G~-------lGFL~~~~----~~~~~~~l~~i~~g~~~~~~r~~l~ 135 (296)
T PRK04539 82 LSVAREIAP----RAVPIIGINQGH-------LGFLTQIP----REYMTDKLLPVLEGKYLAEERILIE 135 (296)
T ss_pred HHHHHHhcc----cCCCEEEEecCC-------CeEeeccC----HHHHHHHHHHHHcCCceEEEeeeEE
Confidence 999888754 245654466665 55432221 2457777788777654444444443
No 49
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.00 E-value=0.056 Score=57.04 Aligned_cols=116 Identities=19% Similarity=0.143 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCc--hHH-------------HHHHHhC--CCCeEEEEcC
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGP--EVG-------------LFLFRKV--PHFRVLVCGG 424 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p--~~a-------------~~l~~~~--~~~~Vvv~GG 424 (590)
|+++.||+|+.. ....++.+++...|...++ +.+...... ... ... ... +.+.|++.||
T Consensus 1 m~~igiv~n~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVP-PGFDSSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccCh-hhcccCcCEEEEEeC
Confidence 356889999843 4456677788776654332 112111000 000 000 111 2467999999
Q ss_pred cchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEE
Q 007781 425 DGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKV 496 (590)
Q Consensus 425 DGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v 496 (590)
|||+-.++..+.. ..+||--|-+|+ ||. +...+ .+++.++++++.++....-.|-.+
T Consensus 78 DGTlL~aar~~~~----~~iPilGIN~G~-------lGF---Lt~~~-~~~~~~~l~~l~~g~y~ie~r~~L 134 (305)
T PRK02649 78 DGTVLSAARQLAP----CGIPLLTINTGH-------LGF---LTEAY-LNQLDEAIDQVLAGQYTIEERTML 134 (305)
T ss_pred cHHHHHHHHHhcC----CCCcEEEEeCCC-------Ccc---cccCC-HHHHHHHHHHHHcCCcEEEEeeeE
Confidence 9999999888754 345654455665 332 11112 245777888887765444444333
No 50
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.70 E-value=0.077 Score=54.87 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=62.5
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCC
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVS 442 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~ 442 (590)
++.+.+|.|+.. .+.++.+++..+|...++ ++.. . . .+.+.|++.|||||+-.++..+... .
T Consensus 2 ~~~i~iv~~~~~---~a~~~~~~l~~~l~~~g~-~~~~-~-~---------~~~D~vi~lGGDGT~L~a~~~~~~~---~ 63 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKVKPLKKIAEEYGF-TVVD-H-P---------KNANIIVSIGGDGTFLQAVRKTGFR---E 63 (264)
T ss_pred CcEEEEEECCCH---HHHHHHHHHHHHHHHCCC-EEEc-C-C---------CCccEEEEECCcHHHHHHHHHhccc---C
Confidence 456788888766 455778888887765443 1111 1 0 1246899999999998888776431 1
Q ss_pred CCCEEEecc-CCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEE
Q 007781 443 PPPVAILPA-GTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAI 498 (590)
Q Consensus 443 ~~plgILPl-GTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~ 498 (590)
.+||--|.+ | .||.=..+ + .+.+.++++++.++.-..-.+..+++
T Consensus 64 ~~pilgIn~~G-------~lGFL~~~---~-~~~~~~~l~~i~~g~~~~~~r~~l~~ 109 (264)
T PRK03501 64 DCLYAGISTKD-------QLGFYCDF---H-IDDLDKMIQAITKEEIEVRKYPTIEV 109 (264)
T ss_pred CCeEEeEecCC-------CCeEcccC---C-HHHHHHHHHHHHcCCcEEEEeeeEEE
Confidence 345322444 4 34432111 2 24577788888776654444444433
No 51
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=95.68 E-value=0.0042 Score=70.90 Aligned_cols=79 Identities=38% Similarity=0.703 Sum_probs=77.1
Q ss_pred EEEEEEecchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEEccceeEEEeC
Q 007781 511 FLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEVGTELVLI 590 (590)
Q Consensus 511 ~f~N~~siG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~~~~~e~i~~~ 590 (590)
+|+||||||+||.|.++||+.|+++|+|..||..|++||.+-|.++++.++|+++..+|.|+|||+.+.+|+ ++|||||
T Consensus 614 VMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLLhrTyrnLEQRV~LECDG~~i~lP~-LQGIviL 692 (1099)
T KOG1170|consen 614 VMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELLHRTYRNLEQRVKLECDGVPIDLPS-LQGIVIL 692 (1099)
T ss_pred hhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHHHHHHHhHHHHeeeecCCcccCCcc-cceeEEE
Confidence 699999999999999999999999999999999999999999999999999999999999999999999995 9999986
No 52
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.04 E-value=0.21 Score=57.12 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=66.1
Q ss_pred CCCCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cEEEEeccCCchHHH---H---HHHhC-CCCeEEEEcCcchHHHH
Q 007781 361 PDARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPEVGL---F---LFRKV-PHFRVLVCGGDGTVGWV 431 (590)
Q Consensus 361 ~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV~~l~~t~~p~~a~---~---l~~~~-~~~~Vvv~GGDGTV~~V 431 (590)
...+++.||.|+.. ....++.+++...|... +++ +.......... + ...+. +.+.||+.|||||+-.+
T Consensus 288 ~~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L~a 364 (569)
T PRK14076 288 IKPTKFGIVSRIDN--EEAINLALKIIKYLDSKGIPYE-LESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVLRA 364 (569)
T ss_pred cCCcEEEEEcCCCC--HHHHHHHHHHHHHHHHCCCEEE-EechhhhhhcccccccccccccccCCCEEEEECCcHHHHHH
Confidence 34567999988743 44556777777766443 332 22100000000 0 00111 24679999999999999
Q ss_pred HHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEE
Q 007781 432 LNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKV 496 (590)
Q Consensus 432 ln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v 496 (590)
+..+.. ..+||-=|.+|+-.=|+. + + .+++.+.++++.++.-..-.|-.+
T Consensus 365 a~~~~~----~~~PilGin~G~lGFL~~-------~---~-~~~~~~~l~~~~~g~~~i~~r~~L 414 (569)
T PRK14076 365 SKLVNG----EEIPIICINMGTVGFLTE-------F---S-KEEIFKAIDSIISGEYEIEKRTKL 414 (569)
T ss_pred HHHhcC----CCCCEEEEcCCCCCcCcc-------c---C-HHHHHHHHHHHHcCCceEEEeEEE
Confidence 888754 346665577777333321 1 1 145777888888776544343333
No 53
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.86 E-value=0.48 Score=48.75 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCC
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSP 443 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~ 443 (590)
++.|+.+|. +.+..+++...|....+ ..... + .. -.....+.|++.|||||+-.++..+ .
T Consensus 2 ~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~-~-~~-----~~~~~~d~vi~iGGDGT~L~a~~~~-------~ 62 (256)
T PRK14075 2 KLGIFYREE-----KEKEAKFLKEKISKEHEVVEFCE-A-SA-----SGKVTADLIIVVGGDGTVLKAAKKV-------G 62 (256)
T ss_pred EEEEEeCcc-----HHHHHHHHHHHHHHcCCeeEeec-c-cc-----cccCCCCEEEEECCcHHHHHHHHHc-------C
Confidence 456665554 34566777766654432 11111 1 11 0112347799999999998877765 2
Q ss_pred CCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEE
Q 007781 444 PPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAIL 499 (590)
Q Consensus 444 ~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~ 499 (590)
+||--|..|+ ||.=..+ + .+++.++++++.++......+..+++.
T Consensus 63 ~Pilgin~G~-------lGfl~~~---~-~~~~~~~l~~~~~g~~~~~~r~~l~~~ 107 (256)
T PRK14075 63 TPLVGFKAGR-------LGFLSSY---T-LEEIDRFLEDLKNWNFREEKRWFLKIE 107 (256)
T ss_pred CCEEEEeCCC-------Ccccccc---C-HHHHHHHHHHHHcCCcEEEEeeEEEEE
Confidence 4544455555 4432211 2 245778888888876665555555543
No 54
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=94.53 E-value=0.011 Score=66.25 Aligned_cols=80 Identities=24% Similarity=0.416 Sum_probs=59.8
Q ss_pred HHHHhhhhHHHHHHHHhhc---cCCCccCCCCCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCccccccccc
Q 007781 48 FQWRRNINLGWMKAIARSK---KNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSIC 124 (590)
Q Consensus 48 ~~~~r~~~~~~~~~~~r~k---~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC 124 (590)
.+.-|++.+.|...+..-. ..+.-.+.+|...|.|+-+.|. ...||.+|...++ .+| ++|+.|
T Consensus 144 ~~~~~r~~~~~~~~~~~l~geE~~ve~l~~vpl~~H~~~rktf~--~~~fC~~~~~~~l-~~g-----------frC~~C 209 (678)
T KOG0193|consen 144 LTKGRRTRLPWDTIASPLDGEELHVEPLENVPLTTHNFVRKTFF--PLAFCDSCCNKFL-FTG-----------FRCQTC 209 (678)
T ss_pred hhhccccccCcccCCCCCCccceeeeeccCCCccceeeeecccc--chhhhhhhcchhh-hcc-----------cccCCC
Confidence 4566778889998886655 3334456678889987777664 6789995544443 133 599999
Q ss_pred ccccCCCccccccCcCc
Q 007781 125 GAAAHLSCSLSAHKDCK 141 (590)
Q Consensus 125 ~~~vH~~C~~~~~~~Ck 141 (590)
++.+|.+|..++...|-
T Consensus 210 ~~KfHq~Cs~~vp~~C~ 226 (678)
T KOG0193|consen 210 GYKFHQSCSPRVPTSCV 226 (678)
T ss_pred CCccccccCCCCCCCCC
Confidence 99999999999999997
No 55
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=94.51 E-value=0.33 Score=54.24 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=63.6
Q ss_pred CCCCcEEEEEcCCCCCCChhHHHHHHHHhhC---CCcEEEEeccCCc---------hHHH-----HHHHhC--CCCeEEE
Q 007781 361 PDARPLLVFINKKSGAQRGDSLRQRLNLLLN---PVQVVELSSTQGP---------EVGL-----FLFRKV--PHFRVLV 421 (590)
Q Consensus 361 ~~~~~llVivNPkSG~~~g~~~~~~l~~lL~---~~qV~~l~~t~~p---------~~a~-----~l~~~~--~~~~Vvv 421 (590)
..++.++||.||.. ....++...+...|. ..+|+ +...... .... .-.... ..+.||+
T Consensus 192 ~~p~~VgIV~n~~k--~~a~el~~~I~~~L~~~~gi~V~-ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs 268 (508)
T PLN02935 192 SDPQTVLIITKPNS--TSVRVLCAEMVRWLREQKGLNIY-VEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT 268 (508)
T ss_pred CCCCEEEEEecCCC--HHHHHHHHHHHHHHHhcCCCEEE-EechhhhhhccccccccccccccccchhhhcccCCCEEEE
Confidence 34688999999855 344567777776664 24443 2110000 0000 000111 3478999
Q ss_pred EcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeee
Q 007781 422 CGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDR 493 (590)
Q Consensus 422 ~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~ 493 (590)
.|||||+-.++..+.. ..+||-=|.+|+ ||+=..+ + .+.+.++|+++.++...+-.|
T Consensus 269 iGGDGTlL~Aar~~~~----~~iPILGIN~G~-------LGFLt~i---~-~~e~~~~Le~il~G~y~Ie~R 325 (508)
T PLN02935 269 LGGDGTVLWAASMFKG----PVPPVVPFSMGS-------LGFMTPF---H-SEQYRDCLDAILKGPISITLR 325 (508)
T ss_pred ECCcHHHHHHHHHhcc----CCCcEEEEeCCC-------cceeccc---C-HHHHHHHHHHHHcCCceEEEE
Confidence 9999999999888754 345654455554 3321111 1 245777888887765444333
No 56
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=94.42 E-value=0.02 Score=63.57 Aligned_cols=77 Identities=21% Similarity=0.422 Sum_probs=60.3
Q ss_pred HhhhhHHHHHHHHhhccCCCccCCCCCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCC
Q 007781 51 RRNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHL 130 (590)
Q Consensus 51 ~r~~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~ 130 (590)
.+..-..||.+..-++.+..- +......|.|...+|. .++.|-||...|-|-+. +||+|..|+.-+|+
T Consensus 496 te~~kkkWmeqfema~SNi~P-dya~an~H~fqmhtF~--~~tsCkvC~mllrGtfY---------QGY~C~~c~~~ahk 563 (865)
T KOG2996|consen 496 TEDLKKKWMEQFEMAKSNISP-DYARANNHDFQMHTFK--NTTSCKVCQMLLRGTFY---------QGYKCEKCGADAHK 563 (865)
T ss_pred cHHHHHHHHHHHHHHHhcCCc-ccccccCcceEEEecc--CCcchHHHHHHhhhhhh---------cceeeeeccccHHH
Confidence 344456899998777766643 6677889999998875 89999999999887322 23599999999999
Q ss_pred CccccccCcC
Q 007781 131 SCSLSAHKDC 140 (590)
Q Consensus 131 ~C~~~~~~~C 140 (590)
.|...++ +|
T Consensus 564 ecl~~vp-~c 572 (865)
T KOG2996|consen 564 ECLGRVP-PC 572 (865)
T ss_pred HhccCCC-Cc
Confidence 9999865 45
No 57
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.26 E-value=0.4 Score=49.64 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCC
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPP 444 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~ 444 (590)
++.+|.|+ ..++.++.+++...|...++ ++. . .+.+.|++.|||||+-.++..+.... .++
T Consensus 2 ~i~Ii~~~---~~~~~~~~~~l~~~l~~~g~-~~~--~-----------~~~Dlvi~iGGDGT~L~a~~~~~~~~--~~i 62 (265)
T PRK04885 2 KVAIISNG---DPKSKRVASKLKKYLKDFGF-ILD--E-----------KNPDIVISVGGDGTLLSAFHRYENQL--DKV 62 (265)
T ss_pred EEEEEeCC---CHHHHHHHHHHHHHHHHcCC-ccC--C-----------cCCCEEEEECCcHHHHHHHHHhcccC--CCC
Confidence 36777773 33456778888887755443 211 0 13468999999999999888875310 245
Q ss_pred CEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeee
Q 007781 445 PVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDR 493 (590)
Q Consensus 445 plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~ 493 (590)
||-=|.+|+-.=|+. + + .+++.++++++.++.-..-.+
T Consensus 63 PilGIN~G~lGFL~~-~---------~-~~~~~~~l~~i~~g~y~i~~r 100 (265)
T PRK04885 63 RFVGVHTGHLGFYTD-W---------R-PFEVDKLVIALAKDPGQVVSY 100 (265)
T ss_pred eEEEEeCCCceeccc-C---------C-HHHHHHHHHHHHcCCceEEEE
Confidence 544456655333331 1 1 145777888888775444333
No 58
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.13 E-value=0.016 Score=65.82 Aligned_cols=50 Identities=28% Similarity=0.573 Sum_probs=43.1
Q ss_pred CCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCCCCCCCCCcCCC
Q 007781 165 QPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICDLGPFR 221 (590)
Q Consensus 165 n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~r 221 (590)
.+..+++|++|.+..++. |.+|++|.-|...+|.+|+.++... |++..-.
T Consensus 165 ~l~Qpt~Cs~C~kFi~gL---~kqGyQCqvC~~vvHKkCh~kvv~~----C~~~~~~ 214 (694)
T KOG0694|consen 165 SLRQPTFCSWCQKFIWGL---RKQGYQCQVCWRVVHKKCHVKVVTL----CDFLDNL 214 (694)
T ss_pred eccCcchhhhhhhheecc---CCCceEEeeeeehHhhhhHHHHHHh----ccCcCcc
Confidence 567799999999987763 4689999999999999999998765 9999874
No 59
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.97 E-value=0.38 Score=49.98 Aligned_cols=111 Identities=18% Similarity=0.255 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCC-CcEEEEeccCCchHHHHH----HHhCCCCeEEEEcCcchHHHHHHHHHhcC
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNP-VQVVELSSTQGPEVGLFL----FRKVPHFRVLVCGGDGTVGWVLNAIDKQN 439 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~-~qV~~l~~t~~p~~a~~l----~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~ 439 (590)
++.+|+|+.. ....++.+++...|.. .+++ +.. .....+.. ..+.+.+.|++.|||||+-.++..+.
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~~g~~~~-~~~--~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~--- 73 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLPPDWEII-YEM--EAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRAK--- 73 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHhcCCEEE-Eec--hhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHcC---
Confidence 4788889744 3455677777765532 2332 211 11111100 01123578999999999877666431
Q ss_pred CCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEE
Q 007781 440 FVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAI 498 (590)
Q Consensus 440 ~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~ 498 (590)
+||--|-+|+=.=|+ .+ + .+++.++++++.++.-..-.|..+++
T Consensus 74 ----~PilGIN~G~lGFL~-------~~---~-~~~~~~~l~~i~~g~~~i~~r~~L~~ 117 (271)
T PRK01185 74 ----GPILGINMGGLGFLT-------EI---E-IDEVGSAIKKLIRGEYFIDERMKLKV 117 (271)
T ss_pred ----CCEEEEECCCCccCc-------cc---C-HHHHHHHHHHHHcCCcEEEEeeEEEE
Confidence 244334666532222 11 1 24577788888877655544544443
No 60
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=93.83 E-value=0.0075 Score=62.32 Aligned_cols=60 Identities=22% Similarity=0.407 Sum_probs=51.5
Q ss_pred CccCCCCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCcc
Q 007781 70 KTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (590)
Q Consensus 70 ~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~ 142 (590)
+.+..+|..+|.+...... -|+.|.-|++++|+ .+|| +|..|+++.|.+|...+..+|..
T Consensus 42 p~~~lv~~r~~~~~~~g~~--~~~~~~~c~~~~~~vl~egL-----------~c~~c~~tch~rcr~lv~ldc~~ 103 (348)
T KOG4239|consen 42 PLELLVPLRGHNFYTAGLL--LPTWCDKCGDFIWGVLREGL-----------LCIHCKFTCHIRCRMLVDLDCRS 103 (348)
T ss_pred cccceeecccccccccccc--ccccchhhhHHHHHHHHHHH-----------hhhhcCCccCHHHHhhhhhhhcC
Confidence 4456677889999887765 78999999999997 6665 99999999999999999999854
No 61
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.91 E-value=0.24 Score=51.06 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=43.2
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCC
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPP 444 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~ 444 (590)
++.+|.||.. ++.++...|+..+.....+ +.+.+.|++.|||||+-.++..+.. ..+
T Consensus 2 ~~~i~~~~~~---~s~~~~~~l~~~~~~~~~~----------------~~~~D~vi~iGGDGT~L~a~~~~~~----~~i 58 (259)
T PRK00561 2 KYKIFASTTP---QTEPVLPKLKKVLKKKLAV----------------EDGADYLFVLGGDGFFVSTAANYNC----AGC 58 (259)
T ss_pred EEEEEeCCCH---HHHHHHHHHHHHHhhCCCc----------------cCCCCEEEEECCcHHHHHHHHHhcC----CCC
Confidence 4667777654 3456777777776543211 1124679999999999988887653 346
Q ss_pred CEEEeccCC
Q 007781 445 PVAILPAGT 453 (590)
Q Consensus 445 plgILPlGT 453 (590)
||--|.+|+
T Consensus 59 PilGIN~G~ 67 (259)
T PRK00561 59 KVVGINTGH 67 (259)
T ss_pred cEEEEecCC
Confidence 655566665
No 62
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.67 E-value=0.04 Score=58.06 Aligned_cols=41 Identities=27% Similarity=0.673 Sum_probs=34.4
Q ss_pred CCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 167 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
.....|..|.--+++. |.||++|.-|+..||.+|+..+..+
T Consensus 139 nrr~~c~ic~d~iwgl---grqgyrcinckl~vhkkch~~v~~~ 179 (593)
T KOG0695|consen 139 NRRAYCGICSDRIWGL---GRQGYRCINCKLLVHKKCHGLVPLT 179 (593)
T ss_pred ccceeeeechhhhhhc---ccccceeecceeehhhhhcccccch
Confidence 3468999998888774 4578999999999999999988754
No 63
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=92.09 E-value=0.077 Score=36.33 Aligned_cols=29 Identities=28% Similarity=0.624 Sum_probs=24.3
Q ss_pred cccccCCCCCCCCCCCCcccCCcccccccccccccCCCcc
Q 007781 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCS 133 (590)
Q Consensus 94 ~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~ 133 (590)
.|.+|++.+.+.. .|.|+.|.+.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~-----------~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-----------FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-----------eEEeCCCCCeEcCccC
Confidence 5999999887643 3699999999999995
No 64
>PLN02727 NAD kinase
Probab=91.96 E-value=0.47 Score=56.31 Aligned_cols=107 Identities=16% Similarity=0.123 Sum_probs=59.6
Q ss_pred CCCCCcEEEEEcCCCCCCChhHHHHHHHHhhCC---CcEEEEeccCCchHHH----H-----H-----HHhC--CCCeEE
Q 007781 360 PPDARPLLVFINKKSGAQRGDSLRQRLNLLLNP---VQVVELSSTQGPEVGL----F-----L-----FRKV--PHFRVL 420 (590)
Q Consensus 360 p~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~---~qV~~l~~t~~p~~a~----~-----l-----~~~~--~~~~Vv 420 (590)
..+++.++||.+++. ...+....+...|.. .+|+ +. ....+.+ . . ..+. ..+.||
T Consensus 675 ~~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~-VE--~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVI 748 (986)
T PLN02727 675 KSTPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVL-VE--PDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVA 748 (986)
T ss_pred CCCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEE-Ee--cchHHHhhccccccccceecccchhhcccCCCEEE
Confidence 345789999999876 344455555555543 3332 21 1111111 0 0 0111 246799
Q ss_pred EEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhcc
Q 007781 421 VCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAA 487 (590)
Q Consensus 421 v~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~ 487 (590)
+.|||||+-.++..+.. ..+||-=|-+|+ ||+= ...++ +++.+.|.++.++.
T Consensus 749 vLGGDGTlLrAar~~~~----~~iPILGINlGr-------LGFL---Tdi~~-ee~~~~L~~Il~G~ 800 (986)
T PLN02727 749 CLGGDGVILHASNLFRG----AVPPVVSFNLGS-------LGFL---TSHYF-EDFRQDLRQVIHGN 800 (986)
T ss_pred EECCcHHHHHHHHHhcC----CCCCEEEEeCCC-------cccc---ccCCH-HHHHHHHHHHHcCC
Confidence 99999999999888754 346765577774 4431 11121 34566667666554
No 65
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=90.31 E-value=0.18 Score=55.35 Aligned_cols=38 Identities=34% Similarity=0.683 Sum_probs=27.8
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~ 137 (590)
+-..||||..-=. -..+..++|+.||+.||+.|.....
T Consensus 118 k~~iCcVClg~rs---------~da~ei~qCd~CGi~VHEgCYGv~d 155 (707)
T KOG0957|consen 118 KAVICCVCLGQRS---------VDAGEILQCDKCGINVHEGCYGVLD 155 (707)
T ss_pred cceEEEEeecCcc---------ccccceeeccccCceeccccccccc
Confidence 3348999984321 2234578999999999999998763
No 66
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=89.67 E-value=0.068 Score=36.47 Aligned_cols=29 Identities=31% Similarity=0.725 Sum_probs=12.7
Q ss_pred cccccCCCCCCCCCCCCcccCCcccccccccccccCCCcc
Q 007781 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCS 133 (590)
Q Consensus 94 ~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~ 133 (590)
.|.+|.+.+.+. ..|.|..|++.+|..|+
T Consensus 2 ~C~~C~~~~~~~-----------~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-----------WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-------------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-----------ceEECccCCCccChhcC
Confidence 589999887641 35799999999999985
No 67
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.35 E-value=2.3 Score=44.29 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCC
Q 007781 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGT 453 (590)
Q Consensus 416 ~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGT 453 (590)
.+.|++.|||||+-.++..+.. ..+||-=|.+|+
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~----~~~PilgIn~G~ 76 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAK----YDIPLIGINRGN 76 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhcc----CCCcEEEEeCCC
Confidence 4789999999999988887754 245544456666
No 68
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=87.88 E-value=6.4 Score=41.08 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=42.2
Q ss_pred CCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEE
Q 007781 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWK 495 (590)
Q Consensus 416 ~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~ 495 (590)
.+.|++.|||||+-.++..+.. ..+||-=+-.|+ ||.= ...+ .+.+.+++.++.++......+..
T Consensus 56 ~d~ivvlGGDGtlL~~~~~~~~----~~~pilgin~G~-------lGFL---t~~~-~~~~~~~~~~~~~~~~~~~~r~~ 120 (281)
T COG0061 56 ADLIVVLGGDGTLLRAARLLAR----LDIPVLGINLGH-------LGFL---TDFE-PDELEKALDALLEGEYRIEERLL 120 (281)
T ss_pred ceEEEEeCCcHHHHHHHHHhcc----CCCCEEEEeCCC-------cccc---cccC-HHHHHHHHHHHhcCceEEEEeEE
Confidence 4679999999999999988865 235554444442 3332 1111 24677778777775445455555
Q ss_pred EEE
Q 007781 496 VAI 498 (590)
Q Consensus 496 v~~ 498 (590)
+++
T Consensus 121 l~~ 123 (281)
T COG0061 121 LEV 123 (281)
T ss_pred EEE
Confidence 543
No 69
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=87.84 E-value=0.23 Score=33.88 Aligned_cols=29 Identities=28% Similarity=0.690 Sum_probs=12.9
Q ss_pred cccccCCCCCcCCCCCCCcceecccccccchhhh
Q 007781 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCH 204 (590)
Q Consensus 171 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~ 204 (590)
.|..|+++..+. ..++|.-|...+|.+|.
T Consensus 2 ~C~~C~~~~~~~-----~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-----WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-----ceEECccCCCccChhcC
Confidence 589999988661 24899999999999984
No 70
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.79 E-value=0.1 Score=58.64 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=40.7
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 209 (590)
+.+|.|.. | ....++||.-|.-.+++.- .+|+||.-|+.-||++|...++.
T Consensus 170 ttphnf~~-~-----t~~tpt~cyecegllwgla---rqglrctqc~vk~hdkc~ell~a 220 (1283)
T KOG1011|consen 170 TTPHNFAT-T-----TFQTPTFCYECEGLLWGLA---RQGLRCTQCQVKVHDKCRELLSA 220 (1283)
T ss_pred CCCCceee-e-----eccCCchhhhhhhHHHHHh---hcccchhhccccHHHHHHHHhhh
Confidence 47888866 3 4567899999987777643 36899999999999999987764
No 71
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=87.57 E-value=2.5 Score=43.32 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=25.2
Q ss_pred CCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCC
Q 007781 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGT 453 (590)
Q Consensus 416 ~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGT 453 (590)
.+.|++.|||||+-.++..+.. ..+||-=|.+|+
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~----~~~PvlGIN~G~ 59 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMN----SGKPVYGMNRGS 59 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcC----CCCeEEEEeCCC
Confidence 3679999999999988888654 345655566665
No 72
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=87.33 E-value=0.38 Score=32.90 Aligned_cols=29 Identities=28% Similarity=0.800 Sum_probs=24.5
Q ss_pred cccccCCCCCcCCCCCCCcceecccccccchhhh
Q 007781 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCH 204 (590)
Q Consensus 171 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~ 204 (590)
.|++|++...+.. .++|.-|...+|.+|.
T Consensus 2 ~C~~C~~~~~~~~-----~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-----FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-----eEEeCCCCCeEcCccC
Confidence 6999999887642 3999999999999984
No 73
>PLN02929 NADH kinase
Probab=86.94 E-value=2.3 Score=44.81 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=44.3
Q ss_pred CCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCC---------Cch--hhhhccCCCCCCccccchHHHHHHHHH
Q 007781 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTG---------NDL--ARVLFWGGGLSSVERNGGLCTMLQHIE 484 (590)
Q Consensus 416 ~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTG---------NDf--AR~Lg~g~g~~~~~~~~~l~~il~~i~ 484 (590)
.+.||+.|||||+-.++..+ . ..+||-=|-.|+. |.| .|.+|.=..+ + .+++.++|+++.
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~-~----~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~---~-~~~~~~~L~~il 135 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFL-D----DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAA---T-AEDFEQVLDDVL 135 (301)
T ss_pred CCEEEEECCcHHHHHHHHHc-C----CCCcEEEEECCCcccccccccccccccccCccccccC---C-HHHHHHHHHHHH
Confidence 47899999999999888877 3 2345433555631 333 3456653222 2 246778888888
Q ss_pred hccceEeeeEEEE
Q 007781 485 HAAVTILDRWKVA 497 (590)
Q Consensus 485 ~a~~~~lD~~~v~ 497 (590)
++....-.+-.++
T Consensus 136 ~g~~~~~~r~~L~ 148 (301)
T PLN02929 136 FGRLKPTELSRIS 148 (301)
T ss_pred cCCceEEEeeeEE
Confidence 7754444433333
No 74
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=83.75 E-value=2.7 Score=46.05 Aligned_cols=47 Identities=28% Similarity=0.307 Sum_probs=37.2
Q ss_pred CCeEEEEcCcchHHHHHHHHHhcCC------CCCCCEEEeccCCCCchhhhhcc
Q 007781 416 HFRVLVCGGDGTVGWVLNAIDKQNF------VSPPPVAILPAGTGNDLARVLFW 463 (590)
Q Consensus 416 ~~~Vvv~GGDGTV~~Vln~L~~~~~------~~~~plgILPlGTGNDfAR~Lg~ 463 (590)
...|+|+|||--++.||....+.-. ..-..+-|||+|+ |.+||.||-
T Consensus 76 ~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 76 PVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred ceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 3579999999999999999776421 1224588999999 999999974
No 75
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=83.64 E-value=0.31 Score=53.36 Aligned_cols=53 Identities=25% Similarity=0.478 Sum_probs=45.7
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCC-CCCCCCCcccCCcccccccccccccCCCccccccCcCccc
Q 007781 78 APHTWVLESVSRGKNLNCCVCLKSMS-PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (590)
Q Consensus 78 ~~H~w~~~~~~~~~P~~C~vC~~~l~-g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~ 143 (590)
..|.|....+. +|-.|..|.+.|- |+-+ ++|..|-+++|..|-.+..-+|.+.
T Consensus 285 r~htfi~kt~~--~~~~Cv~C~krIkfg~~s-----------LkCRdC~v~~H~~Cr~~l~lpCIP~ 338 (604)
T KOG3564|consen 285 RLHTFISKTVI--KPENCVPCGKRIKFGKLS-----------LKCRDCPVVCHIECRDKLTLPCIPT 338 (604)
T ss_pred ccchhhHhhcc--Ccccchhhhhhhhhhhcc-----------cccccCCeeechhHHhcCCCCCcCc
Confidence 36888888876 8999999999985 4444 4999999999999999999999875
No 76
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.35 E-value=2.4 Score=38.83 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.8
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007781 22 MTESRLFILSCFIAALIGILTIAYTAFQWRR 52 (590)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 52 (590)
...-...|+.++++|.+|+|.+|+|+++.+|
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445788899999999999999998876666
No 77
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.15 E-value=2 Score=33.67 Aligned_cols=37 Identities=27% Similarity=0.563 Sum_probs=29.1
Q ss_pred CCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCC
Q 007781 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMS 208 (590)
Q Consensus 168 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~ 208 (590)
...+|..|++.+-. +-.+..|.-|+..+|.+|-...-
T Consensus 4 ~~~~C~~Cg~~~~~----~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 4 EGCKCPVCGKKFKD----GDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred cCccChhhCCcccC----CCCEEECCCCCCcccHHHHhhCC
Confidence 35799999997731 12578999999999999997654
No 78
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=75.01 E-value=14 Score=39.20 Aligned_cols=90 Identities=20% Similarity=0.252 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC---CcEEEEeccCC-ch---HHHHHHHhCCCCeEEEEcCcchHHHHHHHH-
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP---VQVVELSSTQG-PE---VGLFLFRKVPHFRVLVCGGDGTVGWVLNAI- 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~---~qV~~l~~t~~-p~---~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L- 435 (590)
++++||..+..... .+.+.+...|+. ..+|+-...+. .+ ++.+.+++.+.+.||++|| |++-.+.-++
T Consensus 23 ~~~lvv~~~~~~~~---g~~~~v~~~l~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~aKa~a 98 (332)
T cd08180 23 KRVLIVTDPFMVKS---GMLDKVTDHLDSSIEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAAKAII 98 (332)
T ss_pred CeEEEEeCchhhhC---ccHHHHHHHHHhcCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHHHHHH
Confidence 57788887644321 133444444432 22342111111 22 4455666667788999998 5666665543
Q ss_pred --HhcC-CCCCCCEEEecc--CCCCch
Q 007781 436 --DKQN-FVSPPPVAILPA--GTGNDL 457 (590)
Q Consensus 436 --~~~~-~~~~~plgILPl--GTGNDf 457 (590)
.... .....|+..+|. |||--.
T Consensus 99 ~~~~~~~~~~~~p~i~VPTtagtgse~ 125 (332)
T cd08180 99 YFAKKLGKKKKPLFIAIPTTSGTGSEV 125 (332)
T ss_pred HHHhCCCCCCCCCEEEeCCCCcchHhh
Confidence 2211 224579999996 777444
No 79
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=74.90 E-value=13 Score=39.99 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC----CcEEEEeccCCc-----hHHHHHHHhCCCCeEEEEcCcchHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP----VQVVELSSTQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~----~qV~~l~~t~~p-----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~ 434 (590)
++++|+.-+.+-...| +...+...|.. ..+|+-.. ..| ..+.+.+++.+.+.||++|| |++-.+.-+
T Consensus 26 ~r~lvVt~~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~v~-~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SLDDVTKALEELGIEYEIFDEVE-ENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcC--cHHHHHHHHHHcCCeEEEeCCCC-CCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6788887776643332 23334444432 22332111 122 23445566667788999998 666666654
Q ss_pred HHh--------------cCCCCCCCEEEecc--CCCCchhhhh
Q 007781 435 IDK--------------QNFVSPPPVAILPA--GTGNDLARVL 461 (590)
Q Consensus 435 L~~--------------~~~~~~~plgILPl--GTGNDfAR~L 461 (590)
+.- ......+|+..||. |||-...+.-
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~a 144 (357)
T cd08181 102 IAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQYS 144 (357)
T ss_pred HHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCeE
Confidence 321 01123578999997 8887776643
No 80
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=70.70 E-value=20 Score=38.84 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=52.7
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC----cEEE-EeccCC---chHHHHHHHhCCCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVE-LSSTQG---PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~----qV~~-l~~t~~---p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++||.-+.+-... .+..++...|... .+|+ +..... -+++.+++++.+.+.||++|| |++-.+.-++
T Consensus 26 ~r~livt~~~~~~~~--g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK~i 102 (380)
T cd08185 26 KKALIVTGNGSSKKT--GYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAKAI 102 (380)
T ss_pred CeEEEEeCCCchhhc--cHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHHH
Confidence 678888877652222 2445555555432 2332 211111 224445666667788999998 5665555444
Q ss_pred Hhc-------------------C-CCCCCCEEEecc--CCCCchhhhhc
Q 007781 436 DKQ-------------------N-FVSPPPVAILPA--GTGNDLARVLF 462 (590)
Q Consensus 436 ~~~-------------------~-~~~~~plgILPl--GTGNDfAR~Lg 462 (590)
.-. . .....|+..||. |||--..+.--
T Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~av 151 (380)
T cd08185 103 AFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAV 151 (380)
T ss_pred HHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEE
Confidence 210 0 113478999995 88776655443
No 81
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=70.04 E-value=3.8 Score=37.63 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=9.1
Q ss_pred CCCCCCCCeeEe
Q 007781 73 HKVPLAPHTWVL 84 (590)
Q Consensus 73 ~~~~~~~H~w~~ 84 (590)
..-|..+|.|..
T Consensus 30 G~~P~~gt~w~~ 41 (130)
T PF12273_consen 30 GLQPIYGTRWMA 41 (130)
T ss_pred CCCCcCCceecC
Confidence 445778899988
No 82
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=69.98 E-value=19 Score=38.93 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC----cEEEEecc-CCc--h---HHHHHHHhCCCC---eEEEEcCcchHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSST-QGP--E---VGLFLFRKVPHF---RVLVCGGDGTVGW 430 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~----qV~~l~~t-~~p--~---~a~~l~~~~~~~---~Vvv~GGDGTV~~ 430 (590)
++++|+..+.... .+.+.+...|... .++.+... ..| + .+.+.+++.+.+ .||++|| |++..
T Consensus 24 ~rvlvVtd~~v~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~D 98 (355)
T cd08197 24 DKYLLVTDSNVED----LYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVGN 98 (355)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHH
Confidence 6788888765332 2344555555432 22222111 111 2 223334444333 5666765 88888
Q ss_pred HHHHHHhcCCCCCCCEEEecc--CCCCc
Q 007781 431 VLNAIDKQNFVSPPPVAILPA--GTGND 456 (590)
Q Consensus 431 Vln~L~~~~~~~~~plgILPl--GTGND 456 (590)
+.-.+... +....|+..||. |++.|
T Consensus 99 ~ak~~A~~-~~rgip~I~IPTTlla~~d 125 (355)
T cd08197 99 IAGLLAAL-LFRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHH-hccCCCEEEecCccccccc
Confidence 87766432 124679999998 67766
No 83
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=69.65 E-value=17 Score=39.33 Aligned_cols=95 Identities=18% Similarity=0.267 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcEEEEec-cCCc-----hHHHHHHHhCCCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV~~l~~-t~~p-----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++|+..+..-.. ...+++...|.. .++..+.. ...| +.+.+.+++.+.+.||++|| |++-.+.-++
T Consensus 29 ~~~lvv~~~~~~~~---~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~i 104 (377)
T cd08176 29 KKALIVTDKGLVKI---GVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAKAI 104 (377)
T ss_pred CeEEEECCchHhhc---CcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHH
Confidence 57777766544321 234445555542 23322211 1112 23445566667788999988 6666655444
Q ss_pred Hh---c------------CCCCCCCEEEecc--CCCCchhhhhc
Q 007781 436 DK---Q------------NFVSPPPVAILPA--GTGNDLARVLF 462 (590)
Q Consensus 436 ~~---~------------~~~~~~plgILPl--GTGNDfAR~Lg 462 (590)
.- . .....+|+..||. |||-...+.--
T Consensus 105 a~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~av 148 (377)
T cd08176 105 GIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYV 148 (377)
T ss_pred HHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEE
Confidence 21 0 0123579999997 88877655443
No 84
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=68.81 E-value=23 Score=37.34 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccC-Cch---HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQ-GPE---VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~-~p~---~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
.++++||..+..-.+-.+++.+.++.. -...+|+....+ ..+ .+.+.+++...+.||++|| |++..+.-.+...
T Consensus 23 ~~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK~ia~~ 100 (332)
T cd07766 23 FDRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAKAVAAL 100 (332)
T ss_pred CCeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHHHHHHH
Confidence 367888887665442223333444332 222334322211 112 2334445545677888876 8888877776432
Q ss_pred CCCCCCCEEEecc--CCC
Q 007781 439 NFVSPPPVAILPA--GTG 454 (590)
Q Consensus 439 ~~~~~~plgILPl--GTG 454 (590)
- ...+|+..||. |||
T Consensus 101 ~-~~~~p~i~iPTt~~tg 117 (332)
T cd07766 101 L-NRGLPIIIVPTTAATG 117 (332)
T ss_pred h-cCCCCEEEEeCCCchh
Confidence 1 13689999997 555
No 85
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=67.99 E-value=3 Score=31.51 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=25.2
Q ss_pred cccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccccc
Q 007781 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (590)
Q Consensus 94 ~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~ 137 (590)
||.+|.+.-.. +...+|+.|+..+|..|+....
T Consensus 1 ~C~vC~~~~~~-----------~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 1 YCPVCGQSDDD-----------GDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp EBTTTTSSCTT-----------SSEEEBSTTSCEEETTTSTSSH
T ss_pred eCcCCCCcCCC-----------CCeEEcCCCChhhCcccCCCCh
Confidence 68889883221 3357999999999999998754
No 86
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=67.48 E-value=21 Score=38.65 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC----cEEEEeccCC----chHHHHHHHhCCCCeEEEEcCcchHHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSSTQG----PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~----qV~~l~~t~~----p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~ 434 (590)
.++++||..+.+-.. .+.+.+...|... .+|+-...+. .+++.+.+++.+.+.||++|| |++..+.-+
T Consensus 23 ~~r~livt~~~~~~~---g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKa 98 (375)
T cd08194 23 GKRPLIVTDKVMVKL---GLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKA 98 (375)
T ss_pred CCeEEEEcCcchhhc---chHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 367888877655421 1344555555432 2232111111 123445566666788999988 677666555
Q ss_pred HH---hc-----------C-CCCCCCEEEecc--CCCCchh
Q 007781 435 ID---KQ-----------N-FVSPPPVAILPA--GTGNDLA 458 (590)
Q Consensus 435 L~---~~-----------~-~~~~~plgILPl--GTGNDfA 458 (590)
+. .. . .....|+..||. |||--..
T Consensus 99 ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t 139 (375)
T cd08194 99 IAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVT 139 (375)
T ss_pred HHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccC
Confidence 42 10 0 123568999997 6665543
No 87
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=66.26 E-value=34 Score=36.56 Aligned_cols=88 Identities=17% Similarity=0.096 Sum_probs=53.4
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EE-EeccCCch---HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhc
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VE-LSSTQGPE---VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~-l~~t~~p~---~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
++++||..+..- ..+.+.+...|....+ +. +......+ .+.+.+++.+.+.||++|| |++..+.-.+...
T Consensus 24 ~~~liv~d~~~~----~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~ia~~ 98 (347)
T cd08172 24 KRPLIVTGPRSW----AAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAVADR 98 (347)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHHH
Confidence 678888877662 3466677776644333 11 11111122 3334455556678888888 8888887777542
Q ss_pred CCCCCCCEEEecc--CCCCchhh
Q 007781 439 NFVSPPPVAILPA--GTGNDLAR 459 (590)
Q Consensus 439 ~~~~~~plgILPl--GTGNDfAR 459 (590)
..+|+..+|. |||-...+
T Consensus 99 ---~~~p~i~VPTT~gtgse~t~ 118 (347)
T cd08172 99 ---LGVPVITVPTLAATCAAWTP 118 (347)
T ss_pred ---hCCCEEEecCccccCcccce
Confidence 2578999996 67665553
No 88
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=65.98 E-value=2.7 Score=47.90 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=29.6
Q ss_pred CCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCCCCCCCC
Q 007781 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICD 216 (590)
Q Consensus 166 ~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cd 216 (590)
.....||+.| ...|+. .+++|.-|+.-+|..|...++.- |.
T Consensus 186 f~~~~fC~~~----~~~~l~--~gfrC~~C~~KfHq~Cs~~vp~~----C~ 226 (678)
T KOG0193|consen 186 FFPLAFCDSC----CNKFLF--TGFRCQTCGYKFHQSCSPRVPTS----CV 226 (678)
T ss_pred ccchhhhhhh----cchhhh--cccccCCCCCccccccCCCCCCC----CC
Confidence 3444566644 333433 57999999999999999999865 76
No 89
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=65.72 E-value=1.3 Score=31.75 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=13.3
Q ss_pred ccccccccccccCCCccccc
Q 007781 117 FIHRCSICGAAAHLSCSLSA 136 (590)
Q Consensus 117 ~~~~C~vC~~~vH~~C~~~~ 136 (590)
+.++|+.|++.||..|....
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~ 22 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVS 22 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-S
T ss_pred ceEEeCCCCCcCChhhCCcc
Confidence 34699999999999998754
No 90
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=64.85 E-value=18 Score=38.60 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cE--EEEeccCCc----hHHHHHHHhCCCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQGP----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV--~~l~~t~~p----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++||..+.+-. ...+++...|+.. .+ |+....+.. +.+.+++++...+.||++|| |++..+.-.+
T Consensus 23 ~r~liv~d~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTALA----AAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHHH----HHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 6778886654432 2355566666432 22 332211111 23334445556688999998 7888877776
Q ss_pred HhcCCCCCCCEEEecc--CCCCchh
Q 007781 436 DKQNFVSPPPVAILPA--GTGNDLA 458 (590)
Q Consensus 436 ~~~~~~~~~plgILPl--GTGNDfA 458 (590)
.-. ...|+..||. |||--..
T Consensus 98 a~~---~~~p~i~VPTt~gtgse~t 119 (345)
T cd08171 98 ADK---LGKPVFTFPTIASNCAAVT 119 (345)
T ss_pred HHH---cCCCEEEecCccccCcccc
Confidence 432 2478889997 5554433
No 91
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=64.55 E-value=1.3 Score=51.07 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=27.2
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~ 137 (590)
--..|.||+..=.- -+ ..-..|+.|+++||..|.....
T Consensus 270 edviCDvCrspD~e-~~--------neMVfCd~Cn~cVHqaCyGIle 307 (893)
T KOG0954|consen 270 EDVICDVCRSPDSE-EA--------NEMVFCDKCNICVHQACYGILE 307 (893)
T ss_pred ccceeceecCCCcc-cc--------ceeEEeccchhHHHHhhhceee
Confidence 34799999975321 00 1235899999999999997754
No 92
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=64.31 E-value=4.1 Score=41.91 Aligned_cols=86 Identities=23% Similarity=0.513 Sum_probs=51.8
Q ss_pred ccccccCCCC--CCCCCCCCcccCCcccccccccccccCCCccccccCcCccceecCccceEeeeeeeeecccCCCCCCC
Q 007781 93 LNCCVCLKSM--SPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEAS 170 (590)
Q Consensus 93 ~~C~vC~~~l--~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~ 170 (590)
.||.+|.--- --|.|. --.-..|+-||.--|..|.++...- +...+ .-+|.. | .-.
T Consensus 225 ~YCDFclgdsr~nkkt~~------peelvscsdcgrsghpsclqft~nm-----~~avk--~yrwqc--i-------eck 282 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGM------PEELVSCSDCGRSGHPSCLQFTANM-----IAAVK--TYRWQC--I-------ECK 282 (336)
T ss_pred cccceeccccccccccCC------chhhcchhhcCCCCCcchhhhhHHH-----HHHHH--hheeee--e-------ecc
Confidence 3999998421 112232 1234699999999999999984321 11111 235543 1 245
Q ss_pred cccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 171 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
.|..||.+=.-- |-+-|-.|.+-+|--|..
T Consensus 283 ~csicgtsendd-----qllfcddcdrgyhmycls 312 (336)
T KOG1244|consen 283 YCSICGTSENDD-----QLLFCDDCDRGYHMYCLS 312 (336)
T ss_pred eeccccCcCCCc-----eeEeecccCCceeeEecC
Confidence 788887653221 336788888888888763
No 93
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=64.23 E-value=28 Score=37.05 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=47.7
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC-c--EEEEeccCCchHHHHH---HHhCCCCeEEEEcCcchHHHHHHHHHh
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV-Q--VVELSSTQGPEVGLFL---FRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~-q--V~~l~~t~~p~~a~~l---~~~~~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
++++||..+.... .+.+.+...|... + ++ +......+...++ +++.+.+.||++|| |++..+.-.+.-
T Consensus 26 ~~~liv~d~~~~~----~~~~~v~~~l~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a~ 99 (339)
T cd08173 26 GRVLVVTGPTTKS----IAGKKVEALLEDEGEVDVV-IVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAAY 99 (339)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCeEEE-EeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHHH
Confidence 6788888765543 3445555555432 2 23 2222223333333 33445577888887 888888877753
Q ss_pred cCCCCCCCEEEeccCCC
Q 007781 438 QNFVSPPPVAILPAGTG 454 (590)
Q Consensus 438 ~~~~~~~plgILPlGTG 454 (590)
. ..+|+..+|.=.+
T Consensus 100 ~---~~~p~i~iPTT~~ 113 (339)
T cd08173 100 K---LGIPFISVPTAAS 113 (339)
T ss_pred h---cCCCEEEecCccc
Confidence 2 4579999997444
No 94
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=63.46 E-value=28 Score=37.66 Aligned_cols=87 Identities=24% Similarity=0.292 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC--C--cEEEEeccCCch-----HHHHHHHhCCCCeEEEEcCcchHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--V--QVVELSSTQGPE-----VGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~--~--qV~~l~~t~~p~-----~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~ 434 (590)
++++|+..+.+. ....+...|.. . .+|++. ..|. ++.+++++...+.||++|| |++..+.-+
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~--~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~ 93 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVA--GEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKA 93 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCC--CCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHH
Confidence 678888776554 34444444433 2 334432 2222 3444555566788999988 666665554
Q ss_pred HHhc--------------C----C-CCCCCEEEecc--CCCCchhh
Q 007781 435 IDKQ--------------N----F-VSPPPVAILPA--GTGNDLAR 459 (590)
Q Consensus 435 L~~~--------------~----~-~~~~plgILPl--GTGNDfAR 459 (590)
+.-. . . ....|+..||. |||--..+
T Consensus 94 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~ 139 (374)
T cd08183 94 IAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTK 139 (374)
T ss_pred HHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCC
Confidence 3210 0 0 13568999996 67655444
No 95
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=63.35 E-value=33 Score=36.80 Aligned_cols=87 Identities=11% Similarity=0.128 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC---CcEEEEecc-C--CchHHH---HHHHhCC---CCeEEEEcCcchHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP---VQVVELSST-Q--GPEVGL---FLFRKVP---HFRVLVCGGDGTVGWV 431 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~---~qV~~l~~t-~--~p~~a~---~l~~~~~---~~~Vvv~GGDGTV~~V 431 (590)
++++|+..+.... .+.+.+...|+. ..++.+... . ..+... +.+++.+ .+.||++|| |++..+
T Consensus 24 ~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~D~ 98 (344)
T cd08169 24 DQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATGDV 98 (344)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHHH
Confidence 6788887765433 244455555532 233322211 1 122222 3344433 456777776 888887
Q ss_pred HHHHHhcCCCCCCCEEEecc--CCCCc
Q 007781 432 LNAIDKQNFVSPPPVAILPA--GTGND 456 (590)
Q Consensus 432 ln~L~~~~~~~~~plgILPl--GTGND 456 (590)
.-.+... +....|+..+|. ++++|
T Consensus 99 ak~vA~~-~~rgip~i~VPTTlla~~d 124 (344)
T cd08169 99 AGFVAST-LFRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred HHHHHHH-hccCCcEEEecCCcccccc
Confidence 7766432 114678999997 55555
No 96
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=63.14 E-value=24 Score=38.35 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcEEEEec-cCCc-----hHHHHHHHhCCCCeEEEEcCcchHHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV~~l~~-t~~p-----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~ 434 (590)
.++++|+..+.+-...| +++++...|.. .++..+.. ...| ..+.+.+++.+.+.||++|| |++..+.-.
T Consensus 26 ~kr~livtd~~~~~~~g--~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 102 (383)
T cd08186 26 ISKVLLVTGKSAYKKSG--AWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAKS 102 (383)
T ss_pred CCEEEEEcCccHHhhcC--hHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 36788888776543332 33444444432 22221211 1122 23445556666788999998 666665554
Q ss_pred HHh---cC-------------CCCCCCEEEecc--CCCCchhhhh
Q 007781 435 IDK---QN-------------FVSPPPVAILPA--GTGNDLARVL 461 (590)
Q Consensus 435 L~~---~~-------------~~~~~plgILPl--GTGNDfAR~L 461 (590)
+.- .+ ....+|+..||. |||-..++.-
T Consensus 103 ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~a 147 (383)
T cd08186 103 AAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFA 147 (383)
T ss_pred HHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeE
Confidence 421 10 012468899997 8887665544
No 97
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=62.73 E-value=2.4 Score=47.73 Aligned_cols=42 Identities=19% Similarity=0.442 Sum_probs=36.3
Q ss_pred CCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCC
Q 007781 165 QPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (590)
Q Consensus 165 n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 209 (590)
++..++.|.+|...+-+.|. ||++|.-|..-.|..|...+++
T Consensus 530 tF~~~tsCkvC~mllrGtfY---QGY~C~~c~~~ahkecl~~vp~ 571 (865)
T KOG2996|consen 530 TFKNTTSCKVCQMLLRGTFY---QGYKCEKCGADAHKECLGRVPP 571 (865)
T ss_pred eccCCcchHHHHHHhhhhhh---cceeeeeccccHHHHhccCCCC
Confidence 56678999999998888775 4699999999999999988764
No 98
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=62.22 E-value=30 Score=37.51 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=51.6
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcE--EEEeccCC----chHHHHHHHhCCCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQV--VELSSTQG----PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV--~~l~~t~~----p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++||.-+.+.... .++.++...|.. .++ |+-...+. ..++.+++++.+.+.||++|| |++..+.-++
T Consensus 29 ~r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 105 (382)
T cd08187 29 KKVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKAI 105 (382)
T ss_pred CEEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHH
Confidence 677788666554322 234445555543 233 32111111 224456667777788999998 6666666554
Q ss_pred Hhc---------------CCCCCCCEEEecc--CCCCchhhh
Q 007781 436 DKQ---------------NFVSPPPVAILPA--GTGNDLARV 460 (590)
Q Consensus 436 ~~~---------------~~~~~~plgILPl--GTGNDfAR~ 460 (590)
.-. .....+|+..||. |||--..+.
T Consensus 106 a~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~ 147 (382)
T cd08187 106 AAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGG 147 (382)
T ss_pred HhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCC
Confidence 210 0013578999996 777555443
No 99
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=62.09 E-value=36 Score=36.92 Aligned_cols=94 Identities=16% Similarity=0.257 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCC----CcEEEEeccCCc-----hHHHHHHHhCCCCeEEEEcCcchHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNP----VQVVELSSTQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLN 433 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~----~qV~~l~~t~~p-----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln 433 (590)
.++++|+.-+..-.. .+.+++...|.. ..+|+-. ...| .++.+.+++.+.+.||++|| |++-.+.-
T Consensus 30 ~~~~lvvtd~~~~~~---g~~~~v~~~L~~~g~~~~~~~~v-~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 104 (382)
T PRK10624 30 FKKALIVTDKTLVKC---GVVAKVTDVLDAAGLAYEIYDGV-KPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCK 104 (382)
T ss_pred CCEEEEEeCcchhhC---cchHHHHHHHHHCCCeEEEeCCC-CCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 367888876543321 134444444432 2334211 1222 24445666667788898988 66666654
Q ss_pred HHH---hcC--------------CCCCCCEEEecc--CCCCchhhhh
Q 007781 434 AID---KQN--------------FVSPPPVAILPA--GTGNDLARVL 461 (590)
Q Consensus 434 ~L~---~~~--------------~~~~~plgILPl--GTGNDfAR~L 461 (590)
++. ..+ ....+|+..||. |||--..+..
T Consensus 105 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~a 151 (382)
T PRK10624 105 AIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTINY 151 (382)
T ss_pred HHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhccee
Confidence 321 110 113478999996 7776655543
No 100
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=61.54 E-value=36 Score=36.64 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCC-CChhHHHHHHHHhhCCCcEEE-EeccCCch---HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHh
Q 007781 363 ARPLLVFINKKSGA-QRGDSLRQRLNLLLNPVQVVE-LSSTQGPE---VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 363 ~~~llVivNPkSG~-~~g~~~~~~l~~lL~~~qV~~-l~~t~~p~---~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
.++++|+..+.+-. +..+++...|+..--...+|+ +......+ .+.+.+++.+.+.||++|| |++..+.-.+.-
T Consensus 23 ~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~va~ 101 (370)
T cd08551 23 GRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKAIAL 101 (370)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHHH
Confidence 36788888776654 222333333332111122232 11111122 3334455556678888888 666666555421
Q ss_pred c---C------------CCCCCCEEEecc--CCCCchhhh
Q 007781 438 Q---N------------FVSPPPVAILPA--GTGNDLARV 460 (590)
Q Consensus 438 ~---~------------~~~~~plgILPl--GTGNDfAR~ 460 (590)
. . .....|+..||. |||--..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~ 141 (370)
T cd08551 102 LATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPF 141 (370)
T ss_pred HHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCe
Confidence 1 0 012578999998 666444433
No 101
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=60.74 E-value=46 Score=35.32 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEec--cCCchHHHHHHHhCC-CCeEEEEcCcchHHHHHHHHHhcCC
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSS--TQGPEVGLFLFRKVP-HFRVLVCGGDGTVGWVLNAIDKQNF 440 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~--t~~p~~a~~l~~~~~-~~~Vvv~GGDGTV~~Vln~L~~~~~ 440 (590)
++++||..+.. ..++.+.++.... ..++.+.. ....++..+.++... .+.||++|| |++..+.-.+...
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~vA~~-- 97 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKYAAFL-- 97 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHHhh--
Confidence 67888887665 3344454544322 12322221 123334455555554 577888887 8888888777542
Q ss_pred CCCCCEEEeccCCCC
Q 007781 441 VSPPPVAILPAGTGN 455 (590)
Q Consensus 441 ~~~~plgILPlGTGN 455 (590)
..+|+..+|.=.++
T Consensus 98 -~~~p~i~vPTt~~t 111 (331)
T cd08174 98 -RGIPLSVPTTNLND 111 (331)
T ss_pred -cCCCEEEecCcccc
Confidence 46899999974333
No 102
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=60.32 E-value=59 Score=34.95 Aligned_cols=92 Identities=21% Similarity=0.230 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE--EEEeccCCc-----hHHHHHHHhCC--CCeEEEEcCcchHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV--VELSSTQGP-----EVGLFLFRKVP--HFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV--~~l~~t~~p-----~~a~~l~~~~~--~~~Vvv~GGDGTV~~Vln~ 434 (590)
++++|+..+.... ..+...+...|....+ |+-.. ..| +++.+.+++.+ .+.||++|| |++-.+.-.
T Consensus 24 ~r~lvVtd~~~~~---~g~~~~v~~~L~~~~~~~~~~v~-~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD~aK~ 98 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLARRLEALLGGRLAALIDDVA-PNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVIDTAKV 98 (355)
T ss_pred CeEEEEECcchhh---cchHHHHHHHhccCcEEEeCCCC-CCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHH
Confidence 6788887654322 1345556666644333 32111 122 23344555555 677888888 666665544
Q ss_pred HHhc---C----------------CCCCCCEEEecc--CCCCchhhh
Q 007781 435 IDKQ---N----------------FVSPPPVAILPA--GTGNDLARV 460 (590)
Q Consensus 435 L~~~---~----------------~~~~~plgILPl--GTGNDfAR~ 460 (590)
+.-. + ....+|+..||. |||-...+.
T Consensus 99 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 99 LAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred HHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 3211 0 113468999997 888766554
No 103
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=59.48 E-value=31 Score=37.37 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcE--EEEeccCC----chHHHHHHHhCCCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQV--VELSSTQG----PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV--~~l~~t~~----p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++|+..+.+-... .+..++...|+. .++ |+-...+. -+++.+++++.+.+.||++|| |++-.+.-++
T Consensus 24 ~r~livt~~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~i 100 (375)
T cd08179 24 KKAFIVTGGGSMKKF--GFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKAM 100 (375)
T ss_pred CeEEEEeCchHHHhC--ChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHH
Confidence 567777655443222 234445555543 223 32111111 124445666667788999998 5555555443
Q ss_pred H---hcC---------------CCCCCCEEEecc--CCCCchhh
Q 007781 436 D---KQN---------------FVSPPPVAILPA--GTGNDLAR 459 (590)
Q Consensus 436 ~---~~~---------------~~~~~plgILPl--GTGNDfAR 459 (590)
. ..+ .....|+..||. |||--...
T Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~ 144 (375)
T cd08179 101 WIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTA 144 (375)
T ss_pred HHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCC
Confidence 2 100 012468899996 77765544
No 104
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=58.49 E-value=50 Score=35.55 Aligned_cols=51 Identities=29% Similarity=0.441 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhc---C----------------CCCCCCEEEecc--CCCCch
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ---N----------------FVSPPPVAILPA--GTGNDL 457 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~---~----------------~~~~~plgILPl--GTGNDf 457 (590)
++.+++++.+.+.||++|| |++..+.-.+.-. + ....+|+..||. |||--.
T Consensus 68 ~~~~~~~~~~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~ 139 (367)
T cd08182 68 AGIRLLREFGPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEV 139 (367)
T ss_pred HHHHHHHhcCcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhh
Confidence 4455666666788888888 6766665554321 0 113578999997 666544
No 105
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=58.46 E-value=42 Score=36.18 Aligned_cols=91 Identities=23% Similarity=0.326 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC--Cc--EEEEeccCC----chHHHHHHHhCCCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQ--VVELSSTQG----PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~--~q--V~~l~~t~~----p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++|+..+..-.. ...+++...|.. .+ +|+-...+. -+++.+.+++.+.+.||++|| |++..+.-.+
T Consensus 25 ~~~liv~~~~~~~~---~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~i 100 (370)
T cd08192 25 KRPLIVTDPGLAAL---GLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKAV 100 (370)
T ss_pred CeEEEEcCcchhhC---ccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 57777766544221 133445555543 22 332111111 123445555666788999988 6666665554
Q ss_pred Hhc---C----------------CCCCCCEEEecc--CCCCchh
Q 007781 436 DKQ---N----------------FVSPPPVAILPA--GTGNDLA 458 (590)
Q Consensus 436 ~~~---~----------------~~~~~plgILPl--GTGNDfA 458 (590)
.-. + ....+|+..||. |||-...
T Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t 144 (370)
T cd08192 101 ALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVG 144 (370)
T ss_pred HHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhC
Confidence 211 0 012378899987 6664443
No 106
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=58.34 E-value=44 Score=36.28 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCC--C--cEEEEeccCCc-----hHHHHHHHhCCCCeEEEEcCcchHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNP--V--QVVELSSTQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLN 433 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~--~--qV~~l~~t~~p-----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln 433 (590)
.++++|+..+..-.. .+..++...|.. . .+|+-. ...| .++.+++++.+.+.||++|| |++-.+.-
T Consensus 29 ~~r~lvvt~~~~~~~---g~~~~v~~~L~~~~i~~~~~~~v-~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aK 103 (379)
T TIGR02638 29 FKKALVVTDKDLIKF---GVADKVTDLLDEAGIAYELFDEV-KPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAK 103 (379)
T ss_pred CCEEEEEcCcchhhc---cchHHHHHHHHHCCCeEEEECCC-CCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 367888876543221 134445555543 2 223211 1122 23445566667788999988 66666554
Q ss_pred HHH---hcC--------------CCCCCCEEEecc--CCCCchhhhh
Q 007781 434 AID---KQN--------------FVSPPPVAILPA--GTGNDLARVL 461 (590)
Q Consensus 434 ~L~---~~~--------------~~~~~plgILPl--GTGNDfAR~L 461 (590)
++. ..+ ....+|+..||. |||-...+..
T Consensus 104 aia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~a 150 (379)
T TIGR02638 104 AIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTINY 150 (379)
T ss_pred HHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCEE
Confidence 332 110 113478999997 7776554443
No 107
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=58.09 E-value=43 Score=28.83 Aligned_cols=30 Identities=33% Similarity=0.683 Sum_probs=21.3
Q ss_pred ccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccc
Q 007781 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSL 134 (590)
Q Consensus 93 ~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~ 134 (590)
+.|.+|.+.|..+... ++ -|+-++|..|..
T Consensus 79 ~~C~vC~k~l~~~~f~---------~~---p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFV---------VF---PCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCceEE---------Ee---CCCeEEeccccc
Confidence 5799999999643321 22 256899999985
No 108
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=56.81 E-value=32 Score=37.00 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=48.0
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--c--EEEEecc-CCc--h---HHHHHHHhCC---CCeEEEEcCcchHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--Q--VVELSST-QGP--E---VGLFLFRKVP---HFRVLVCGGDGTVG 429 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--q--V~~l~~t-~~p--~---~a~~l~~~~~---~~~Vvv~GGDGTV~ 429 (590)
.++++|+..+.... .+.+.+...|... . ++.+... ..| + .+.+.+++.+ .+.||++|| |++.
T Consensus 31 ~~~~livtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~ 105 (358)
T PRK00002 31 GKKVAIVTDETVAP----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVIG 105 (358)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHHH
Confidence 36788888765532 3556666666432 2 2222211 112 2 2233444433 366777776 8888
Q ss_pred HHHHHHHhcCCCCCCCEEEecc--CCCCc
Q 007781 430 WVLNAIDKQNFVSPPPVAILPA--GTGND 456 (590)
Q Consensus 430 ~Vln~L~~~~~~~~~plgILPl--GTGND 456 (590)
.+.-.+... +...+|+..+|. ++.+|
T Consensus 106 D~aK~iA~~-~~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 106 DLAGFAAAT-YMRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred HHHHHHHHH-hcCCCCEEEcCchhhhccc
Confidence 888776421 124678999997 44444
No 109
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.01 E-value=5.9 Score=36.22 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=16.7
Q ss_pred eeeeecccCCCCCCCcccccCCCC
Q 007781 156 SVRWTEITDQPSEASFCSYCEEPC 179 (590)
Q Consensus 156 ~~~~~~~~~n~~~~~~C~~C~k~c 179 (590)
+|+-..+.|.|..++||..||+.+
T Consensus 55 vegvlglg~dye~psfchncgs~f 78 (160)
T COG4306 55 VEGVLGLGGDYEPPSFCHNCGSRF 78 (160)
T ss_pred eeeeeccCCCCCCcchhhcCCCCC
Confidence 333333446789999999997754
No 110
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=54.65 E-value=48 Score=35.87 Aligned_cols=94 Identities=23% Similarity=0.313 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cE--EEEeccCC----chHHHHHHHhCCCCeEEEEcCcchHHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQG----PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV--~~l~~t~~----p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~ 434 (590)
.++++|+..+..-.. .+++++...|... ++ |+-...+. .+++.+.+++.+.+.||++|| |++-.+.-+
T Consensus 26 ~~~~lvvt~~~~~~~---g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~aK~ 101 (374)
T cd08189 26 VKKVLIVTDKGLVKL---GLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDCAKA 101 (374)
T ss_pred CCeEEEEeCcchhhc---ccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 367888876654321 2344455555432 22 32111111 234556666667788998988 566555544
Q ss_pred HH---hcCC-------------CCCCCEEEecc--CCCCchhhh
Q 007781 435 ID---KQNF-------------VSPPPVAILPA--GTGNDLARV 460 (590)
Q Consensus 435 L~---~~~~-------------~~~~plgILPl--GTGNDfAR~ 460 (590)
+. ..+. ...+|+..||. |||-...+.
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~ 145 (374)
T cd08189 102 IAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIA 145 (374)
T ss_pred HHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCe
Confidence 32 1110 12368899986 777655443
No 111
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=54.17 E-value=33 Score=36.68 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cE-EEEeccCC-ch---HHHHHHHhCCCCeEEEEcCcchHHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV-VELSSTQG-PE---VGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV-~~l~~t~~-p~---~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~ 436 (590)
++++|+.-+.+. ..+.+++...|... .+ |+....+. .+ .+.+.+++...+.||++|| |++-.+.-.+.
T Consensus 23 ~r~livt~~~~~----~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVL----DLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHHH
Confidence 567777533332 23566666666543 22 33221111 12 3444555556788999998 77777766664
Q ss_pred hcCCCCCCCEEEecc--CCCCchhh
Q 007781 437 KQNFVSPPPVAILPA--GTGNDLAR 459 (590)
Q Consensus 437 ~~~~~~~~plgILPl--GTGNDfAR 459 (590)
-. ...|+..||. |||--...
T Consensus 98 ~~---~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 98 DY---LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred HH---cCCCEEEeCCccccCccccc
Confidence 32 3578999997 67765544
No 112
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=53.35 E-value=49 Score=35.50 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC-cEEE-EeccCCchHHHHH---HHhCCCCeEEEEcCcchHHHHHHHHHhc
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV-QVVE-LSSTQGPEVGLFL---FRKVPHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~-qV~~-l~~t~~p~~a~~l---~~~~~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
++++||..+.+...- .+.++..|... .++. +......+...++ +++.+.+.||++|| |++..+.-.+.-
T Consensus 35 ~~~livtd~~~~~~~----~~~l~~~l~~~~~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~vA~- 108 (350)
T PRK00843 35 GRALIVTGPTTKKIA----GDRVEENLEDAGDVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLAAY- 108 (350)
T ss_pred CeEEEEECCcHHHHH----HHHHHHHHHhcCCeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHHHH-
Confidence 578888887765432 23344444321 2221 2222222333333 33345577888887 888888877652
Q ss_pred CCCCCCCEEEeccCCCCc
Q 007781 439 NFVSPPPVAILPAGTGND 456 (590)
Q Consensus 439 ~~~~~~plgILPlGTGND 456 (590)
....|+..||.=-++|
T Consensus 109 --~rgip~I~IPTT~~td 124 (350)
T PRK00843 109 --RLGIPFISVPTAASHD 124 (350)
T ss_pred --hcCCCEEEeCCCccCC
Confidence 2467899999644434
No 113
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=52.59 E-value=28 Score=37.27 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCCc----EEEEeccCCch---HHHHHHHhCCCCeEEEEcCcchHHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQ----VVELSSTQGPE---VGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~q----V~~l~~t~~p~---~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~ 436 (590)
++++|+..+.+-. ...+++...|.... ++.+......+ .+.+.+++.+.+.||++|| |++..+.-.+.
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~ia 97 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAVA 97 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHHH
Confidence 5677777655543 23455555554322 22222111222 3344555556678888887 78888877765
Q ss_pred hcCCCCCCCEEEecc--CCCCchhh
Q 007781 437 KQNFVSPPPVAILPA--GTGNDLAR 459 (590)
Q Consensus 437 ~~~~~~~~plgILPl--GTGNDfAR 459 (590)
.. ...|+..||. |||-...+
T Consensus 98 ~~---~~~p~i~VPTtagtgse~t~ 119 (349)
T cd08550 98 DR---LDKPIVIVPTIASTCAASSN 119 (349)
T ss_pred HH---cCCCEEEeCCccccCccccc
Confidence 32 3578999997 66644443
No 114
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=51.86 E-value=10 Score=40.11 Aligned_cols=104 Identities=26% Similarity=0.468 Sum_probs=54.1
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCcccee--cCccc---eEeee--eeeeeccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSM--IGFEH---VIHQW--SVRWTEIT 163 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~--~~~~~---~~H~W--~~~~~~~~ 163 (590)
-|+|| .|+..+.+ . ||.|..|+..| |.-- ..|+.-.. ..+.+ -.||. ...|.++.
T Consensus 262 ~ps~C-~CH~~~~~-~-----------Gy~CP~Ckakv---CsLP--~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip 323 (378)
T KOG2807|consen 262 TPSFC-ACHSELSG-G-----------GYFCPQCKAKV---CSLP--IECPICSLTLVSSPHLARSYHHLFPLKPFVEIP 323 (378)
T ss_pred Ccchh-eecccccc-C-----------ceeCCcccCee---ecCC--ccCCccceeEecchHHHHHHHhhcCCcchhhcc
Confidence 46676 57755543 2 46999999766 5543 34443221 11111 12222 11222221
Q ss_pred -CCCCCCCccccc-CCCCCcCCCCCCCcceecccccccchhhhccCCCCCCCCCCCcC
Q 007781 164 -DQPSEASFCSYC-EEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICDLGP 219 (590)
Q Consensus 164 -~n~~~~~~C~~C-~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~ 219 (590)
+.+....+|..| ++... +..++|.-||..+=.+|--++ +|+.-.|..=+
T Consensus 324 ~~~~~~~~~Cf~C~~~~~~------~~~y~C~~Ck~~FCldCDv~i-HesLh~CpgCe 374 (378)
T KOG2807|consen 324 ETEYNGSRFCFACQGELLS------SGRYRCESCKNVFCLDCDVFI-HESLHNCPGCE 374 (378)
T ss_pred ccccCCCcceeeeccccCC------CCcEEchhccceeeccchHHH-HhhhhcCCCcC
Confidence 122335679999 32222 246899999998888886543 34444465433
No 115
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=51.65 E-value=56 Score=34.81 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=44.2
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cE--EEEeccC-Cc--h---HHHHHHHhCC---CCeEEEEcCcchHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQ-GP--E---VGLFLFRKVP---HFRVLVCGGDGTVGW 430 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV--~~l~~t~-~p--~---~a~~l~~~~~---~~~Vvv~GGDGTV~~ 430 (590)
++++||.++..-. .+.+.+...|+.. .+ +.+...+ .| + .+.+.+++.+ .+.||++|| |++..
T Consensus 21 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 95 (344)
T TIGR01357 21 SKLVIITDETVAD----LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVVGD 95 (344)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHHHH
Confidence 6788888655532 2455555555432 22 2222111 11 2 2333444443 256777877 78887
Q ss_pred HHHHHHhcCCCCCCCEEEecc
Q 007781 431 VLNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 431 Vln~L~~~~~~~~~plgILPl 451 (590)
+.-.+...- ....|+..+|.
T Consensus 96 ~aK~iA~~~-~~~~p~i~VPT 115 (344)
T TIGR01357 96 LAGFVAATY-MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHH-ccCCCEEEecC
Confidence 776664211 14578999997
No 116
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=51.23 E-value=84 Score=34.22 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=35.5
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHH---hc------------CCCCCCCEEEecc--CCCCchhhhhcc
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAID---KQ------------NFVSPPPVAILPA--GTGNDLARVLFW 463 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~---~~------------~~~~~~plgILPl--GTGNDfAR~Lg~ 463 (590)
++.+++++.+.+.||++|| |++-.+.-++. .. .....+|+..||. |||-...+.--+
T Consensus 79 ~~~~~~~~~~~D~IiaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~avi 152 (383)
T PRK09860 79 AGLKLLKENNCDSVISLGG-GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCII 152 (383)
T ss_pred HHHHHHHHcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEEE
Confidence 4556677777788999998 44444443332 11 0123578999997 888776665543
No 117
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=51.07 E-value=43 Score=37.56 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=31.9
Q ss_pred HhCCCCeEEEEcCcchHHHHHH---HHHhcCCCCCCCEEEeccCCCCchh
Q 007781 412 RKVPHFRVLVCGGDGTVGWVLN---AIDKQNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 412 ~~~~~~~Vvv~GGDGTV~~Vln---~L~~~~~~~~~plgILPlGTGNDfA 458 (590)
++.+-+.++++|||||+.-+.. .+.+.+ ...++.-||-===||+.
T Consensus 173 ~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g--~~I~VIGIPKTIDNDI~ 220 (459)
T PTZ00286 173 IRHGINILFTLGGDGTHRGALAIYKELRRRK--LNISVVGIPKTIDNDIP 220 (459)
T ss_pred HHcCCCEEEEeCCchHHHHHHHHHHHHHHhC--CCceEEEeccccCCCCC
Confidence 3344567999999999986533 333333 34788889988889986
No 118
>PRK15138 aldehyde reductase; Provisional
Probab=50.72 E-value=62 Score=35.30 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEec-cCCc-----hHHHHHHHhCCCCeEEEEcCcchHHHHHHHHH-
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAID- 436 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~-t~~p-----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~- 436 (590)
++++||.-+.+=.. ..+..++...|....+..+.. ...| +++.+++++.+.+.||++|| |++-.+.-.+.
T Consensus 30 ~~~livt~~~~~~~--~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~ia~ 106 (387)
T PRK15138 30 ARVLITYGGGSVKK--TGVLDQVLDALKGMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGTKFIAA 106 (387)
T ss_pred CeEEEECCCchHHh--cCcHHHHHHHhcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHHHH
Confidence 56777754433211 224455666665444422211 1122 24455666667788999998 44444333321
Q ss_pred --hc---------------CCCCCCCEEEecc--CCCCchhhhh
Q 007781 437 --KQ---------------NFVSPPPVAILPA--GTGNDLARVL 461 (590)
Q Consensus 437 --~~---------------~~~~~~plgILPl--GTGNDfAR~L 461 (590)
.. .....+|+..||. |||-......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~a 150 (387)
T PRK15138 107 AANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAGA 150 (387)
T ss_pred HHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCCE
Confidence 10 0012468888997 8887655543
No 119
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=49.90 E-value=9 Score=40.61 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=24.4
Q ss_pred CeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEe--ccCCCC
Q 007781 417 FRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAIL--PAGTGN 455 (590)
Q Consensus 417 ~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgIL--PlGTGN 455 (590)
|.|+-+|||||+-.....+.. +..|.|||= |.|+--
T Consensus 107 D~VisvGGDGTfL~Aasrv~~---~~~PViGvNtDP~~Seg 144 (395)
T KOG4180|consen 107 DMVISVGGDGTFLLAASRVID---DSKPVIGVNTDPTGSEG 144 (395)
T ss_pred hEEEEecCccceeehhhhhhc---cCCceeeecCCCCcCcc
Confidence 679999999999888774443 135667764 444443
No 120
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=49.58 E-value=5.4 Score=44.10 Aligned_cols=40 Identities=20% Similarity=0.542 Sum_probs=31.0
Q ss_pred CCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCC
Q 007781 165 QPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMS 208 (590)
Q Consensus 165 n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~ 208 (590)
.+..+.+|..|+|.+- | |--+++|..|...+|-.|..++.
T Consensus 293 t~~~~~~Cv~C~krIk--f--g~~sLkCRdC~v~~H~~Cr~~l~ 332 (604)
T KOG3564|consen 293 TVIKPENCVPCGKRIK--F--GKLSLKCRDCPVVCHIECRDKLT 332 (604)
T ss_pred hccCcccchhhhhhhh--h--hhcccccccCCeeechhHHhcCC
Confidence 4566789999999762 2 22368999999999999998743
No 121
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=49.41 E-value=11 Score=32.75 Aligned_cols=32 Identities=31% Similarity=0.719 Sum_probs=22.7
Q ss_pred CCCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 168 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
....|.+|+++++.+. +---=|+..||..|..
T Consensus 77 ~~~~C~vC~k~l~~~~------f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSV------FVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCce------EEEeCCCeEEeccccc
Confidence 4678999999987532 2222356889999974
No 122
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=48.81 E-value=7.7 Score=47.14 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=34.9
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~ 143 (590)
.|++|-.|...+|. ++ ..|..|.+++|++|...+...|--.
T Consensus 555 ~P~~c~~c~~~~~~-~~-----------~~c~~c~~~chkkc~~~~~~~~~~~ 595 (918)
T KOG1453|consen 555 KPAPCRTCETYSWF-ME-----------LECELCRLVCHKKCLEALKSLCGHE 595 (918)
T ss_pred CCcccccccccchh-hh-----------cccceeeeeccccchhhccccCccc
Confidence 49999999999984 22 3999999999999999998888544
No 123
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=48.63 E-value=9 Score=40.18 Aligned_cols=108 Identities=21% Similarity=0.409 Sum_probs=58.0
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCccceec--Ccc---ceEeee--eeeeeccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMI--GFE---HVIHQW--SVRWTEIT 163 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~~--~~~---~~~H~W--~~~~~~~~ 163 (590)
-|++|. |+..+.+ . +|.|.+|+..| |.- +..|.+.+.. -+. .-.||. ...|++..
T Consensus 294 ~Ps~Ca-CHs~~~~-g-----------Gy~CP~CktkV---CsL--Pi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p 355 (421)
T COG5151 294 LPSVCA-CHSEVKG-G-----------GYECPVCKTKV---CSL--PISCPICSLQLILSTHLARSYHHLYPLKPFVEKP 355 (421)
T ss_pred Ccccee-eeeeecc-C-----------ceeCCccccee---ecC--CccCcchhHHHHHHHHHHHHHHhhccCccccccc
Confidence 477775 6655442 2 46999999776 543 3445443321 010 112221 12222221
Q ss_pred -CCCCCCCcccccCCCCC----cCCCC--CCCcceecccccccchhhhccCCCCCCCCCCC
Q 007781 164 -DQPSEASFCSYCEEPCS----GSFLG--GSPIWCCLWCQRLVHVDCHNNMSNETGDICDL 217 (590)
Q Consensus 164 -~n~~~~~~C~~C~k~c~----~~~~~--g~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cdl 217 (590)
+..+.++.|.+|..++- ++|-. .+..++|.-|+.++-.+|--++ +|+...|..
T Consensus 356 ~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfi-He~Lh~C~g 415 (421)
T COG5151 356 EGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFI-HETLHFCIG 415 (421)
T ss_pred CCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHH-HHHHhhCCC
Confidence 23355678999988653 22311 1236999999999999997543 333334543
No 124
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=47.68 E-value=90 Score=34.14 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=58.9
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCc----EEEEeccCCc----hHHHHHHHhCCCCeEEEEcCcchHHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQ----VVELSSTQGP----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~q----V~~l~~t~~p----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~ 434 (590)
.++.+|+--|.-- ...+.+.+.+.|+... ||+-...+.+ +.+.+.+++.+.+.||+.|| |++-.+.-+
T Consensus 29 ~~r~liVTd~~~~---~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~AK~ 104 (377)
T COG1454 29 AKRALIVTDRGLA---KLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAAKA 104 (377)
T ss_pred CCceEEEECCccc---cchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 4678888776522 1235666666666544 4432222221 24456777788899999999 555555444
Q ss_pred HH---hcC------------CCCCCCEEEecc--CCCCchhhhhccC
Q 007781 435 ID---KQN------------FVSPPPVAILPA--GTGNDLARVLFWG 464 (590)
Q Consensus 435 L~---~~~------------~~~~~plgILPl--GTGNDfAR~Lg~g 464 (590)
+. ..+ ....+|+..||. |||-...+..-+.
T Consensus 105 i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~aVit 151 (377)
T COG1454 105 IALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVIT 151 (377)
T ss_pred HHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeEEEE
Confidence 32 111 112378888985 9999888776553
No 125
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=47.54 E-value=68 Score=34.27 Aligned_cols=83 Identities=14% Similarity=0.230 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCC----CcEEEEecc---CCchHHH---HHHHhCCC---CeEEEEcCcchHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNP----VQVVELSST---QGPEVGL---FLFRKVPH---FRVLVCGGDGTVG 429 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~----~qV~~l~~t---~~p~~a~---~l~~~~~~---~~Vvv~GGDGTV~ 429 (590)
.++++|+..+..-. .+.+.+...|.. ..++.+... ...+... +.+++.+. +.||++|| |++.
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 98 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GVVG 98 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hHHH
Confidence 36788888766643 244555555543 222333211 1112223 33444332 56777776 8888
Q ss_pred HHHHHHHhcCCCCCCCEEEecc
Q 007781 430 WVLNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 430 ~Vln~L~~~~~~~~~plgILPl 451 (590)
.+.-.+... +...+|+..+|.
T Consensus 99 D~ak~vA~~-~~rgip~i~VPT 119 (345)
T cd08195 99 DLAGFVAAT-YMRGIDFIQIPT 119 (345)
T ss_pred hHHHHHHHH-HhcCCCeEEcch
Confidence 877666421 124678888886
No 126
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=47.14 E-value=13 Score=28.00 Aligned_cols=31 Identities=23% Similarity=0.641 Sum_probs=23.3
Q ss_pred cccccCCCCCcCCCCCCCcceecccccccchhhhcc
Q 007781 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (590)
Q Consensus 171 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 206 (590)
+|.+|++.-.. ..-+.|.-|++.+|..|...
T Consensus 1 ~C~vC~~~~~~-----~~~i~C~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 1 YCPVCGQSDDD-----GDMIQCDSCNRWYHQECVGP 31 (51)
T ss_dssp EBTTTTSSCTT-----SSEEEBSTTSCEEETTTSTS
T ss_pred eCcCCCCcCCC-----CCeEEcCCCChhhCcccCCC
Confidence 58888883221 14589999999999999864
No 127
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=46.58 E-value=9.5 Score=46.53 Aligned_cols=35 Identities=29% Similarity=0.683 Sum_probs=28.4
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSL 134 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~ 134 (590)
-+..|++|.+--.. . ....+.|+.|+.+||..|..
T Consensus 218 ~D~~C~iC~~~~~~--n-------~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQ--N-------SNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred CCccceeecccccC--C-------CceEEEcCCCcchhhhhccC
Confidence 46799999986652 1 24567999999999999998
No 128
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=46.52 E-value=1.1e+02 Score=33.02 Aligned_cols=52 Identities=23% Similarity=0.421 Sum_probs=31.8
Q ss_pred HHHHHHhCCCCeEEEEcCcchHHHHHHHH---HhcC-----------C-CCCCCEEEecc--CCCCchhh
Q 007781 407 GLFLFRKVPHFRVLVCGGDGTVGWVLNAI---DKQN-----------F-VSPPPVAILPA--GTGNDLAR 459 (590)
Q Consensus 407 a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L---~~~~-----------~-~~~~plgILPl--GTGNDfAR 459 (590)
+.+.+++...+.||++|| |++-.+.-++ .... . ...+|+..||. |||--.++
T Consensus 77 ~~~~~~~~~~d~IIaiGG-GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 77 GAELYLENGCDVIIAVGG-GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred HHHHHHhcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 345566666788999988 6666665332 1110 0 12468999997 88765555
No 129
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=46.16 E-value=7.6 Score=27.77 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=13.3
Q ss_pred CcceecccccccchhhhccC
Q 007781 188 PIWCCLWCQRLVHVDCHNNM 207 (590)
Q Consensus 188 ~~~~C~WC~~~vH~~C~~~~ 207 (590)
+.++|..|...||..|..-.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~ 22 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVS 22 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-S
T ss_pred ceEEeCCCCCcCChhhCCcc
Confidence 34799999999999998543
No 130
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=45.59 E-value=73 Score=34.33 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=51.0
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cE-EEEeccCCc----hHHHHHHHhCCCCeEEEEcCcchHHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV-VELSSTQGP----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV-~~l~~t~~p----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~ 436 (590)
++++||.-+..- ..+.+++...|... .+ |+....+.+ +.+.+.+++.+.+.||++|| |++..+.-.+.
T Consensus 30 ~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 104 (366)
T PRK09423 30 KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAVA 104 (366)
T ss_pred CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHHH
Confidence 677788755443 23556666666543 22 332222221 13334455556788999998 78877777765
Q ss_pred hcCCCCCCCEEEecc--CCCCchhh
Q 007781 437 KQNFVSPPPVAILPA--GTGNDLAR 459 (590)
Q Consensus 437 ~~~~~~~~plgILPl--GTGNDfAR 459 (590)
-. ..+|+..||. |||-....
T Consensus 105 ~~---~~~p~i~IPTtagtgSe~t~ 126 (366)
T PRK09423 105 DY---LGVPVVIVPTIASTDAPTSA 126 (366)
T ss_pred HH---cCCCEEEeCCccccCccccC
Confidence 32 3578999997 55554444
No 131
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=45.42 E-value=82 Score=34.38 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHh---cC-----------------------CCCCCCEEEecc--CCCCch
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK---QN-----------------------FVSPPPVAILPA--GTGNDL 457 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~---~~-----------------------~~~~~plgILPl--GTGNDf 457 (590)
++.+++++.+.+.||++|| |++..+.-.+.- .+ ....+|+..||. |||-..
T Consensus 69 ~~~~~~~~~~~D~IIaiGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTagTGSE~ 147 (398)
T cd08178 69 KGLELMNSFKPDTIIALGG-GSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEV 147 (398)
T ss_pred HHHHHHHhcCCCEEEEeCC-ccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCCcccccc
Confidence 4445566666788999998 555555544321 00 003468999996 787655
Q ss_pred hhhh
Q 007781 458 ARVL 461 (590)
Q Consensus 458 AR~L 461 (590)
.+..
T Consensus 148 t~~a 151 (398)
T cd08178 148 TPFA 151 (398)
T ss_pred cCeE
Confidence 4433
No 132
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=45.27 E-value=10 Score=41.28 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=36.6
Q ss_pred CeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccc
Q 007781 417 FRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAV 488 (590)
Q Consensus 417 ~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~ 488 (590)
|.||..||||||--+..-..+ .-|||--+-+|| ||+=.-+ +.+++.+.+..+.++..
T Consensus 170 D~iItLGGDGTvL~aS~LFq~----~VPPV~sFslGs-------lGFLtpf----~f~~f~~~l~~v~~~~~ 226 (409)
T KOG2178|consen 170 DLIITLGGDGTVLYASSLFQR----SVPPVLSFSLGS-------LGFLTPF----PFANFQEQLARVLNGRA 226 (409)
T ss_pred eEEEEecCCccEEEehhhhcC----CCCCeEEeecCC-------ccccccc----cHHHHHHHHHHHhcCcc
Confidence 569999999999877555433 357887777774 4432212 13467777777766553
No 133
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=45.06 E-value=12 Score=43.24 Aligned_cols=35 Identities=26% Similarity=0.614 Sum_probs=25.9
Q ss_pred cccccCCCCCCCCCCCCcccCCccccccc--ccccccCCCcccccc
Q 007781 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCS--ICGAAAHLSCSLSAH 137 (590)
Q Consensus 94 ~C~vC~~~l~g~qg~g~~~~~~~~~~~C~--vC~~~vH~~C~~~~~ 137 (590)
=||||.+-=-+ .+++-..|+ .|.++||..|...+.
T Consensus 7 GCCVCSDErGW---------aeNPLVYCDG~nCsVAVHQaCYGIvq 43 (900)
T KOG0956|consen 7 GCCVCSDERGW---------AENPLVYCDGHNCSVAVHQACYGIVQ 43 (900)
T ss_pred ceeeecCcCCC---------ccCceeeecCCCceeeeehhcceeEe
Confidence 49999875422 134557887 799999999998764
No 134
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=44.10 E-value=65 Score=34.41 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhh
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR 459 (590)
.+.+.+++.+-+.++++|||||+.-+ +.|.+ ...++--||.==-||+.-
T Consensus 85 ~~~~~l~~~~Id~LivIGGdgS~~~a-~~L~~----~gi~vigiPkTIDNDl~g 133 (324)
T TIGR02483 85 KIVANLKELGLDALIAIGGDGTLGIA-RRLAD----KGLPVVGVPKTIDNDLEA 133 (324)
T ss_pred HHHHHHHHcCCCEEEEECCchHHHHH-HHHHh----cCCCEEeeccccCCCCcC
Confidence 33444444556789999999999755 45554 247888899877899963
No 135
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=43.90 E-value=17 Score=42.39 Aligned_cols=71 Identities=25% Similarity=0.477 Sum_probs=44.4
Q ss_pred CCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCC--CC--CCCCCCCcCCCceeeCCcceeecccccccCc
Q 007781 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMS--NE--TGDICDLGPFRRLILSPLYVKELNHTLAGGI 241 (590)
Q Consensus 166 ~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~--~~--~~~~CdlG~~r~~IlPP~~i~~~~~~~~~~~ 241 (590)
++....|++|..+=..- +-+-.-|--|+..||..|...+. .. ....|.|| |-||-.+++ +.||.
T Consensus 268 ~dedviCDvCrspD~e~---~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg-----~~ppCvLCP----kkGGa 335 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSEE---ANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALG-----IEPPCVLCP----KKGGA 335 (893)
T ss_pred ccccceeceecCCCccc---cceeEEeccchhHHHHhhhceeecCCCCeeehhcccc-----CCCCeeecc----ccCCc
Confidence 35678999998762211 12457899999999999986532 11 13469999 555543432 23666
Q ss_pred ccccccc
Q 007781 242 LSSITHG 248 (590)
Q Consensus 242 ~~~i~~~ 248 (590)
+.+...+
T Consensus 336 mK~~~sg 342 (893)
T KOG0954|consen 336 MKPTKSG 342 (893)
T ss_pred ccccCCC
Confidence 6655444
No 136
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=43.86 E-value=1.7e+02 Score=29.92 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhC-CCcEEEEeccCCchHHHHHHHhCC-----CCeEEEEcCcchHHHHHHHHHh
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLN-PVQVVELSSTQGPEVGLFLFRKVP-----HFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~-~~qV~~l~~t~~p~~a~~l~~~~~-----~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
+|++.|+|+|.|.|+...++-....+.+ ...|. +..++.-.+..+|.+... ...+.|.++| ++.-+-..+..
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~-lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~~l~~~~e~ 78 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVA-LIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELTILEDAYEA 78 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEE-EEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chhhHHHHHHH
Confidence 5799999999999987655444444433 33442 333444445567765531 2345555544 33333222222
Q ss_pred cCCCCCCCEEEecc-CCCCchhhh
Q 007781 438 QNFVSPPPVAILPA-GTGNDLARV 460 (590)
Q Consensus 438 ~~~~~~~plgILPl-GTGNDfAR~ 460 (590)
.. .....+.++=+ |++|-++..
T Consensus 79 a~-~~~~d~VlvDleG~as~~~~~ 101 (231)
T PF07015_consen 79 AE-ASGFDFVLVDLEGGASELNDY 101 (231)
T ss_pred HH-hcCCCEEEEeCCCCCchhHHH
Confidence 11 12345667766 888777543
No 137
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=43.40 E-value=5.5 Score=37.64 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=13.0
Q ss_pred EEEcCcchHHHHHHHHH
Q 007781 420 LVCGGDGTVGWVLNAID 436 (590)
Q Consensus 420 vv~GGDGTV~~Vln~L~ 436 (590)
=--|||||++|+-+.-.
T Consensus 129 RgdGGDGT~hW~Yd~QE 145 (180)
T PLN00180 129 RGDGGDGTGHWVYERQE 145 (180)
T ss_pred cccCCCCceeeEeehHH
Confidence 35699999999866543
No 139
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=43.29 E-value=73 Score=33.89 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=44.8
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC----cEEEEeccCC--ch---HHHHHHHhCCCCeEEEEcCcchHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSSTQG--PE---VGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~----qV~~l~~t~~--p~---~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~ 434 (590)
++++||..+..-...+ +.+...|... .+++...... .+ ++.+.+++ ..+.||++|| |++..+.-.
T Consensus 25 ~kvlivtd~~~~~~~~----~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~D~aK~ 98 (332)
T cd08549 25 SKIMIVCGNNTYKVAG----KEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTIIDLVKF 98 (332)
T ss_pred CcEEEEECCcHHHHHH----HHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHHHHHHH
Confidence 5788888776643323 4444444332 2222111111 12 23334444 5567888888 888888777
Q ss_pred HHhcCCCCCCCEEEeccC
Q 007781 435 IDKQNFVSPPPVAILPAG 452 (590)
Q Consensus 435 L~~~~~~~~~plgILPlG 452 (590)
+.- ....|+..+|.=
T Consensus 99 iA~---~~gip~I~VPTT 113 (332)
T cd08549 99 VSF---KVGKPFISVPTA 113 (332)
T ss_pred HHH---HcCCCEEEeCCC
Confidence 652 246799999963
No 140
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=42.84 E-value=18 Score=40.07 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=30.1
Q ss_pred CCccccccCCCCCCCCCCCCcccCCc-ccccccccccccCCCccccccCcCccce
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDS-FIHRCSICGAAAHLSCSLSAHKDCKCVS 144 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~-~~~~C~vC~~~vH~~C~~~~~~~Ck~~~ 144 (590)
.|.||.-|.-.|..+--. ++.. -=..|++|+-.+|..|.-+-..-+.+.+
T Consensus 122 ~~gFC~~C~C~iC~kfD~----~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s 172 (446)
T PF07227_consen 122 EPGFCRRCMCCICSKFDD----NKNTCSWIGCDVCGHWCHLDCALRHELIGTGPS 172 (446)
T ss_pred CCCccccCCccccCCccc----CCCCeeEEeccCCCceehhhhhcccccccCCcc
Confidence 567777666655532100 0001 1248999999999999987665554443
No 141
>PLN02564 6-phosphofructokinase
Probab=41.79 E-value=68 Score=36.24 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=32.3
Q ss_pred HHHHHhCCCCeEEEEcCcchHHHHHH---HHHhcCCCCCCCEEEeccCCCCchh
Q 007781 408 LFLFRKVPHFRVLVCGGDGTVGWVLN---AIDKQNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 408 ~~l~~~~~~~~Vvv~GGDGTV~~Vln---~L~~~~~~~~~plgILPlGTGNDfA 458 (590)
.+.+++.+-+.++++|||||+.-+.. .+.+.+ -+.++.-||-===||+.
T Consensus 169 v~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g--~~i~VIGIPKTIDNDI~ 220 (484)
T PLN02564 169 VDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRG--LKVAVAGIPKTIDNDIP 220 (484)
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcC--CCceEEEecccccCCCc
Confidence 33344445577999999999976533 222232 23557888887789986
No 142
>PRK06756 flavodoxin; Provisional
Probab=40.95 E-value=2e+02 Score=26.42 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=18.2
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP 392 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~ 392 (590)
++++||+=...| ..+++.+.|...+..
T Consensus 2 mkv~IiY~S~tG--nTe~vA~~ia~~l~~ 28 (148)
T PRK06756 2 SKLVMIFASMSG--NTEEMADHIAGVIRE 28 (148)
T ss_pred ceEEEEEECCCc--hHHHHHHHHHHHHhh
Confidence 568888855554 456777777776654
No 143
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=40.15 E-value=56 Score=34.82 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cEEEEeccCCch----HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHh
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPE----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV~~l~~t~~p~----~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
++++|+..+.. .+.+.+++...|... .+|+-.....+. .+.+.+++.+.+.||++|| |++..+.-.+.-
T Consensus 24 ~~~livt~~~~----~~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~ia~ 98 (337)
T cd08177 24 SRALVLTTPSL----ATKLAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKAIAL 98 (337)
T ss_pred CeEEEEcChHH----HHHHHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 56777754332 222556677777654 334322112222 2334444455678888887 888888777643
Q ss_pred cCCCCCCCEEEecc-CCCCc
Q 007781 438 QNFVSPPPVAILPA-GTGND 456 (590)
Q Consensus 438 ~~~~~~~plgILPl-GTGND 456 (590)
. ...|+..||. -||-.
T Consensus 99 ~---~~~p~i~IPTtatgse 115 (337)
T cd08177 99 R---TGLPIIAIPTTLSGSE 115 (337)
T ss_pred H---hcCCEEEEcCCchhhh
Confidence 2 2578888884 35443
No 144
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=39.78 E-value=1.4e+02 Score=32.54 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=49.7
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cE--EEEeccCCch----HHHHHHHhCCCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQGPE----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV--~~l~~t~~p~----~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++||..+.... ..++..+...|... ++ |+-.....+. ++.+.+++...+.||++|| |++-.+.-.+
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 98 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAKIA 98 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 6788887655443 12445555555432 22 3211111122 2334455556678888888 6777666554
Q ss_pred Hh---cC------------CCCCCCEEEecc--CCCCchhhh
Q 007781 436 DK---QN------------FVSPPPVAILPA--GTGNDLARV 460 (590)
Q Consensus 436 ~~---~~------------~~~~~plgILPl--GTGNDfAR~ 460 (590)
.- .+ .....|+..||. |||-...+.
T Consensus 99 a~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 99 GLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred HHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 31 10 012568899986 677665554
No 145
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=39.00 E-value=22 Score=26.34 Aligned_cols=30 Identities=27% Similarity=0.685 Sum_probs=23.1
Q ss_pred cccccCCCCCcCCCCCCCcceeccc-ccccchhhhcc
Q 007781 171 FCSYCEEPCSGSFLGGSPIWCCLWC-QRLVHVDCHNN 206 (590)
Q Consensus 171 ~C~~C~k~c~~~~~~g~~~~~C~WC-~~~vH~~C~~~ 206 (590)
.|+.|++++.+ .-|+|.-| ...++.+|...
T Consensus 2 ~Cd~C~~~i~G------~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVG------VRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcC------CeEECCCCCCccchHHhhCc
Confidence 69999986544 24899999 57888888754
No 146
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=38.76 E-value=4.1 Score=42.73 Aligned_cols=41 Identities=17% Similarity=0.394 Sum_probs=33.5
Q ss_pred CCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCC
Q 007781 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (590)
Q Consensus 166 ~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 209 (590)
+.-++.|+.|+.-.++.+. +|++|.-|+.+.|.+|...+..
T Consensus 59 ~~~~~~~~~c~~~~~~vl~---egL~c~~c~~tch~rcr~lv~l 99 (348)
T KOG4239|consen 59 LLLPTWCDKCGDFIWGVLR---EGLLCIHCKFTCHIRCRMLVDL 99 (348)
T ss_pred ccccccchhhhHHHHHHHH---HHHhhhhcCCccCHHHHhhhhh
Confidence 3457899999987776553 5799999999999999988754
No 147
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=38.65 E-value=8.3 Score=28.66 Aligned_cols=29 Identities=31% Similarity=0.602 Sum_probs=16.6
Q ss_pred ccccCCCCCCCCCCCCcccCCccccccc--ccccccCCCccccc
Q 007781 95 CCVCLKSMSPSQTLGPMVASDSFIHRCS--ICGAAAHLSCSLSA 136 (590)
Q Consensus 95 C~vC~~~l~g~qg~g~~~~~~~~~~~C~--vC~~~vH~~C~~~~ 136 (590)
|.+|.+.+. ||. +|+ .|+...|..|...-
T Consensus 1 C~~C~~iv~--~G~-----------~C~~~~C~~r~H~~C~~~y 31 (43)
T PF08746_consen 1 CEACKEIVT--QGQ-----------RCSNRDCNVRLHDDCFKKY 31 (43)
T ss_dssp -TTT-SB-S--SSE-----------E-SS--S--EE-HHHHHHH
T ss_pred CcccchhHe--eec-----------cCCCCccCchHHHHHHHHH
Confidence 788998875 554 999 69999999998763
No 148
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=38.29 E-value=82 Score=35.23 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=31.5
Q ss_pred HHhCCCCeEEEEcCcchHHHHHH---HHHhcCCCCCCCEEEeccCCCCchh
Q 007781 411 FRKVPHFRVLVCGGDGTVGWVLN---AIDKQNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 411 ~~~~~~~~Vvv~GGDGTV~~Vln---~L~~~~~~~~~plgILPlGTGNDfA 458 (590)
+++.+-+.++++|||||+.-+.. .+.+.+ ...++.-||-===||+.
T Consensus 168 L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g--~~I~VIGIPKTIDNDi~ 216 (443)
T PRK06830 168 LERMNINILFVIGGDGTLRGASAIAEEIERRG--LKISVIGIPKTIDNDIN 216 (443)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhC--CCceEEEeccccCCCCc
Confidence 33344567999999999976643 222222 24788888987789986
No 149
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=38.18 E-value=17 Score=26.99 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=16.4
Q ss_pred ccccCCCCCcCCCCCCCcceec--ccccccchhhhccCC
Q 007781 172 CSYCEEPCSGSFLGGSPIWCCL--WCQRLVHVDCHNNMS 208 (590)
Q Consensus 172 C~~C~k~c~~~~~~g~~~~~C~--WC~~~vH~~C~~~~~ 208 (590)
|..|.+... +|.+|. -|...+|..|.....
T Consensus 1 C~~C~~iv~-------~G~~C~~~~C~~r~H~~C~~~y~ 32 (43)
T PF08746_consen 1 CEACKEIVT-------QGQRCSNRDCNVRLHDDCFKKYF 32 (43)
T ss_dssp -TTT-SB-S-------SSEE-SS--S--EE-HHHHHHHT
T ss_pred CcccchhHe-------eeccCCCCccCchHHHHHHHHHH
Confidence 566765431 469999 699999999997643
No 150
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=38.07 E-value=36 Score=33.72 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhccCCCccCCCCCCCCeeEeeeeCCCCCccccccCCCCC
Q 007781 40 ILTIAYTAFQWRRNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMS 103 (590)
Q Consensus 40 ~~~~~~~~~~~~r~~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~ 103 (590)
.-=+.|.++++.+..-....+|+..++++.+ +|.+|..+--
T Consensus 25 A~R~AfhLL~~~~~~~~~la~al~~a~~~i~-----------------------~C~~C~~~te 65 (198)
T COG0353 25 AQRLAFHLLQRDREDVERLAKALLEAKENIK-----------------------HCSVCGNLTE 65 (198)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHhcCc-----------------------cccccCCcCC
Confidence 3447788899999989999999877666544 7999987654
No 151
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=38.03 E-value=57 Score=33.56 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcEEEEe---ccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQVVELS---STQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV~~l~---~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~ 434 (590)
.++++|+.-+..-. ..-+.++..|.. .++..+. .....++..++...+ +.+.||.+|| ||++.+.-.
T Consensus 19 ~~~~lvv~d~~t~~----~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGg-G~i~D~~K~ 93 (250)
T PF13685_consen 19 LKKVLVVTDENTYK----AAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGG-GTIIDIAKY 93 (250)
T ss_dssp -SEEEEEEETTHHH----HHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEES-HHHHHHHHH
T ss_pred CCcEEEEEcCCHHH----HHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCC-cHHHHHHHH
Confidence 36788887665432 233455555543 3442221 111223344555555 2356777777 999999888
Q ss_pred HHhcCCCCCCCEEEeccCCCCc
Q 007781 435 IDKQNFVSPPPVAILPAGTGND 456 (590)
Q Consensus 435 L~~~~~~~~~plgILPlGTGND 456 (590)
+... .+.|+..+|.=-.||
T Consensus 94 ~A~~---~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 94 AAFE---LGIPFISVPTAASHD 112 (250)
T ss_dssp HHHH---HT--EEEEES--SSG
T ss_pred HHHh---cCCCEEEeccccccc
Confidence 7642 367999999877766
No 152
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=37.60 E-value=1.1e+02 Score=32.69 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC----cEEEEeccC---CchHHH---HHHHhCCCCeEEEEcCcchHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSSTQ---GPEVGL---FLFRKVPHFRVLVCGGDGTVGWVLN 433 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~----qV~~l~~t~---~p~~a~---~l~~~~~~~~Vvv~GGDGTV~~Vln 433 (590)
++++||.-+.+-. ....++...|... .+|+....+ ..+... +.+++ ..+.||++|| |++..+.-
T Consensus 24 ~~~livtd~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-Gs~~D~aK 97 (348)
T cd08175 24 KKALIVADENTYA----AAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-GTINDITK 97 (348)
T ss_pred CcEEEEECCcHHH----HHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-cHHHHHHH
Confidence 6777876554322 1234455555432 334333211 112222 33333 5677888988 78888777
Q ss_pred HHHhcCCCCCCCEEEecc
Q 007781 434 AIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 434 ~L~~~~~~~~~plgILPl 451 (590)
.+.-. ..+|+..||.
T Consensus 98 ~vA~~---~~~p~i~IPT 112 (348)
T cd08175 98 YVSYK---TGIPYISVPT 112 (348)
T ss_pred HHHHh---cCCCEEEecC
Confidence 77532 4578999996
No 153
>PLN02834 3-dehydroquinate synthase
Probab=35.67 E-value=94 Score=34.60 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC----cEEEEeccC-----CchHHHH---HHHhCC---CCeEEEEcCcchH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSSTQ-----GPEVGLF---LFRKVP---HFRVLVCGGDGTV 428 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~----qV~~l~~t~-----~p~~a~~---l~~~~~---~~~Vvv~GGDGTV 428 (590)
++++||.++.... .+.+.+...|... .++++.... ..+...+ .+++.+ .+.||++|| |++
T Consensus 101 ~rvlIVtD~~v~~----~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-Gsv 175 (433)
T PLN02834 101 KRVLVVTNETVAP----LYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-GVI 175 (433)
T ss_pred CEEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-hHH
Confidence 6788888775543 2445566666432 333322111 1222222 233333 235667766 888
Q ss_pred HHHHHHHHhcCCCCCCCEEEeccC
Q 007781 429 GWVLNAIDKQNFVSPPPVAILPAG 452 (590)
Q Consensus 429 ~~Vln~L~~~~~~~~~plgILPlG 452 (590)
..+.-.+... +...+|+..+|.-
T Consensus 176 ~D~ak~~A~~-y~rgiplI~VPTT 198 (433)
T PLN02834 176 GDMCGFAAAS-YQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHH-hcCCCCEEEECCc
Confidence 8887755321 1246788889983
No 154
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=35.13 E-value=1.2e+02 Score=28.94 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCCChhHHHHHHHHhhCCCcE-EEEe---ccCCchHHHHHHHhCCC---C-eEEEEcCcchHHHHHHHHHhcCCCCCCCE
Q 007781 375 GAQRGDSLRQRLNLLLNPVQV-VELS---STQGPEVGLFLFRKVPH---F-RVLVCGGDGTVGWVLNAIDKQNFVSPPPV 446 (590)
Q Consensus 375 G~~~g~~~~~~l~~lL~~~qV-~~l~---~t~~p~~a~~l~~~~~~---~-~Vvv~GGDGTV~~Vln~L~~~~~~~~~pl 446 (590)
|+..-..+.++....|+..++ |++. ....|+...++.++++. + .|.++|+++-|.-|+.++-. .|-|
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~-----~PVI 82 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTT-----LPVI 82 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSS-----S-EE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccC-----CCEE
Confidence 433333456666666665544 4443 23568888888887642 2 36689999999999999853 3445
Q ss_pred EEeccCCC
Q 007781 447 AILPAGTG 454 (590)
Q Consensus 447 gILPlGTG 454 (590)
|+ |.-++
T Consensus 83 gv-P~~~~ 89 (150)
T PF00731_consen 83 GV-PVSSG 89 (150)
T ss_dssp EE-EE-ST
T ss_pred Ee-ecCcc
Confidence 55 76554
No 155
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=34.68 E-value=11 Score=42.53 Aligned_cols=53 Identities=21% Similarity=0.418 Sum_probs=39.3
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 209 (590)
.-.|-|.+. .-+..+|.+=.+-|..-|...-.--+|.-|+..||..|+.++.+
T Consensus 167 ~gEHvWlet-------nvsgd~CYvGE~~C~~r~~kS~~rRkCAaCkIVvHT~CieqLeK 219 (1004)
T KOG0782|consen 167 DGEHVWLET-------NVSGDECYVGEKDCRVRFAKSGERRKCAACKIVVHTNCIEQLEK 219 (1004)
T ss_pred CceeEEEec-------ccCCceeeechHHHHHHHhhhhhhccceeeeEEEechHHHHHHH
Confidence 367999984 23457999988888755533113469999999999999988765
No 156
>PF15050 SCIMP: SCIMP protein
Probab=34.16 E-value=54 Score=29.93 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=29.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007781 23 TESRLFILSCFIAALIGILTIAYTAFQWRRNINLGW 58 (590)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 58 (590)
+.+|+.+....|+.++++..|+|-+.+|+.+-...|
T Consensus 6 ~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkw 41 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKW 41 (133)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 457888888899999999999999999998555444
No 157
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=33.67 E-value=22 Score=43.56 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=39.0
Q ss_pred CCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhcc-CCCC---CCCCCCCcCCCc
Q 007781 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN-MSNE---TGDICDLGPFRR 222 (590)
Q Consensus 166 ~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~-~~~~---~~~~CdlG~~r~ 222 (590)
+..+++|.+|.+.|.... ..++.|--|+..||-+|... ..+| +...|-+.+.+.
T Consensus 216 ~~~D~~C~iC~~~~~~n~---n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~ 273 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNS---NVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP 273 (1051)
T ss_pred cCCCccceeecccccCCC---ceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc
Confidence 456789999999986532 14789999999999999972 2222 134577777765
No 158
>PRK14071 6-phosphofructokinase; Provisional
Probab=33.50 E-value=1.3e+02 Score=32.62 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhh
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR 459 (590)
.+.+.+++.+-+.++++|||||+.- +..|.+. ...++--||.===||+.-
T Consensus 98 ~~~~~l~~~~Id~Li~IGGdgS~~~-a~~L~~~---~~i~vIgiPkTIDNDl~~ 147 (360)
T PRK14071 98 EIIDGYHSLGLDALIGIGGDGSLAI-LRRLAQQ---GGINLVGIPKTIDNDVGA 147 (360)
T ss_pred HHHHHHHHcCCCEEEEECChhHHHH-HHHHHHh---cCCcEEEecccccCCCcC
Confidence 3444455556678999999999864 4555542 257888999877899863
No 159
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=33.46 E-value=17 Score=28.55 Aligned_cols=36 Identities=33% Similarity=0.534 Sum_probs=28.4
Q ss_pred CccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccccc
Q 007781 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (590)
Q Consensus 92 P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~ 137 (590)
..-|.+|.+-+-. ...+..|..|+...|..|...+-
T Consensus 5 ~~~C~~Cg~~~~~----------~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 5 GCKCPVCGKKFKD----------GDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred CccChhhCCcccC----------CCCEEECCCCCCcccHHHHhhCC
Confidence 3579999998752 24567999999999999997743
No 160
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=33.22 E-value=1.8e+02 Score=31.30 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=21.7
Q ss_pred CeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEecc
Q 007781 417 FRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 417 ~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPl 451 (590)
+.||++|| |++..+.-.+...- ..++|+..+|.
T Consensus 90 d~IVaiGG-G~v~D~ak~~A~~~-~rg~p~i~VPT 122 (354)
T cd08199 90 EPVLAIGG-GVLTDVAGLAASLY-RRGTPYVRIPT 122 (354)
T ss_pred CEEEEECC-cHHHHHHHHHHHHh-cCCCCEEEEcC
Confidence 55666666 88888877775211 13577888887
No 161
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=32.03 E-value=1.4e+02 Score=32.13 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=42.4
Q ss_pred CCCCCCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccC-Cc-----hHHHHHHHhCCCCeEEEEcC
Q 007781 359 MPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQ-GP-----EVGLFLFRKVPHFRVLVCGG 424 (590)
Q Consensus 359 ~p~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~-~p-----~~a~~l~~~~~~~~Vvv~GG 424 (590)
+|.+ +++||++---|=+.. -+..++...|...+++++.--+ .| ..|.+++++..-+.||++||
T Consensus 26 i~~~-~kVLi~YGGGSIKrn--GvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGG 94 (384)
T COG1979 26 IPKD-AKVLIVYGGGSIKKN--GVYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGG 94 (384)
T ss_pred cccc-CeEEEEecCcccccc--chHHHHHHHhcCceEEEecCCCCCchHHHHHHHHHHHHHcCceEEEEecC
Confidence 4555 788998854333333 3677787888888888876422 12 35556777777778999888
No 162
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=31.55 E-value=96 Score=31.96 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=35.5
Q ss_pred CCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCC
Q 007781 402 QGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGT 453 (590)
Q Consensus 402 ~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGT 453 (590)
..+..+++...+.+-++||-.||..|+.+-+..|.+......-.+ |+|.|=
T Consensus 128 ~d~~~al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~-Im~GgG 178 (248)
T PRK11572 128 ANPLNALKQLADLGVARILTSGQQQDAEQGLSLIMELIAASDGPI-IMAGAG 178 (248)
T ss_pred CCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCCCE-EEeCCC
Confidence 456777777777777899999999998887777664321112234 888763
No 163
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=31.49 E-value=1e+02 Score=32.94 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=35.2
Q ss_pred HHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhh
Q 007781 407 GLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 407 a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR 459 (590)
+.+.+++.+-+.++++|||||+.-+. .|.+. ..|+--||.===||+.-
T Consensus 84 ~~~~l~~~~Id~Li~IGGdgs~~~a~-~L~e~----~i~vigiPkTIDNDi~g 131 (317)
T cd00763 84 AIEQLKKHGIDALVVIGGDGSYMGAM-RLTEH----GFPCVGLPGTIDNDIPG 131 (317)
T ss_pred HHHHHHHcCCCEEEEECCchHHHHHH-HHHHc----CCCEEEecccccCCCCC
Confidence 33444445567899999999998764 45542 47899999888899873
No 164
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=31.13 E-value=1e+02 Score=32.65 Aligned_cols=47 Identities=26% Similarity=0.312 Sum_probs=33.5
Q ss_pred HHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhh
Q 007781 409 FLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 409 ~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR 459 (590)
+.+++.+-+.++++|||||+.-+. .|.+. ...++--||.=-=||+.-
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~-~L~e~---~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQ-KLYEE---GGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHH-HHHHh---hCCCEEeecccccCCCcC
Confidence 344444557899999999997663 33331 247888899988899974
No 165
>PRK14072 6-phosphofructokinase; Provisional
Probab=30.80 E-value=85 Score=34.78 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHh----cCCCCCCCEEEeccCCCCchhh
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK----QNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~----~~~~~~~plgILPlGTGNDfAR 459 (590)
.+.+.+++.+-+.++++|||||+.-+.. |.+ .+ .+.++--||-===||+.-
T Consensus 94 ~~~~~l~~~~Id~LivIGGdgS~~~a~~-L~e~~~~~g--~~i~vIgIPkTIDNDl~g 148 (416)
T PRK14072 94 RLLEVFKAHDIGYFFYNGGNDSMDTALK-VSQLAKKMG--YPIRCIGIPKTIDNDLPG 148 (416)
T ss_pred HHHHHHHHcCCCEEEEECChHHHHHHHH-HHHHHHHhC--CCceEEEeeecccCCCCC
Confidence 3444455556678999999999976632 322 22 347888899766899984
No 166
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=30.67 E-value=38 Score=33.59 Aligned_cols=41 Identities=32% Similarity=0.607 Sum_probs=30.1
Q ss_pred CCccccccCC--CCCCCCCCCCcccCCcccccccccccccCCCccccccCcCc
Q 007781 91 KNLNCCVCLK--SMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (590)
Q Consensus 91 ~P~~C~vC~~--~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck 141 (590)
+.-.|-+|.+ .|.+.|- ....+|..|+.+.|+.|... ..|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~--------~~~~~C~~C~~v~H~~C~~~--~~Cp 193 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI--------DTTVRCPKCKSVFHKSCFRK--KSCP 193 (202)
T ss_pred CCCCCccCCCCCCCCCCCC--------CCeeeCCcCccccchhhcCC--CCCC
Confidence 5668888984 4554331 23579999999999999996 5564
No 167
>PRK10586 putative oxidoreductase; Provisional
Probab=30.65 E-value=2e+02 Score=31.21 Aligned_cols=85 Identities=11% Similarity=0.039 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cEEEEeccCCchHHHHHHHhCC--CCeEEEEcCcchHHHHHHHHHhcC
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPEVGLFLFRKVP--HFRVLVCGGDGTVGWVLNAIDKQN 439 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV~~l~~t~~p~~a~~l~~~~~--~~~Vvv~GGDGTV~~Vln~L~~~~ 439 (590)
++++||.-+.+= +.....+...|... ++..+......++..++.+... .+.||.+|| |++-.+.-++...
T Consensus 35 ~~~lvv~g~~~~----~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~~~~d~iiavGG-Gs~iD~aK~~a~~- 108 (362)
T PRK10586 35 SRAVWIYGERAI----AAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASGDDRQVVIGVGG-GALLDTAKALARR- 108 (362)
T ss_pred CeEEEEEChHHH----HHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhccCCCEEEEecC-cHHHHHHHHHHhh-
Confidence 566777544332 22234444445432 3322322223344445544443 366777777 6777777766532
Q ss_pred CCCCCCEEEeccCCCCc
Q 007781 440 FVSPPPVAILPAGTGND 456 (590)
Q Consensus 440 ~~~~~plgILPlGTGND 456 (590)
..+|+..+|.=-|+|
T Consensus 109 --~~~p~i~vPT~a~t~ 123 (362)
T PRK10586 109 --LGLPFVAIPTIAATC 123 (362)
T ss_pred --cCCCEEEEeCCcccc
Confidence 357999999744443
No 168
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=30.32 E-value=28 Score=32.41 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=11.3
Q ss_pred CeEEEEcCcchHHH
Q 007781 417 FRVLVCGGDGTVGW 430 (590)
Q Consensus 417 ~~Vvv~GGDGTV~~ 430 (590)
.|+++||||||-+.
T Consensus 86 QRlIvsGGegtss~ 99 (160)
T PF12219_consen 86 QRLIVSGGEGTSSS 99 (160)
T ss_dssp -EEEEESSSSSSGG
T ss_pred cEEEEeCCCCcccC
Confidence 58999999998654
No 169
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=30.11 E-value=2.6e+02 Score=30.15 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhc-------------C-C-CCCCCEEEecc--CCCCchhh
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ-------------N-F-VSPPPVAILPA--GTGNDLAR 459 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~-------------~-~-~~~~plgILPl--GTGNDfAR 459 (590)
++.+.+++.+.+.||++|| |++..+.-.+.-. + . ....|+..||. |||-....
T Consensus 74 ~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~ 143 (376)
T cd08193 74 AAVEAARAAGADGVIGFGG-GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTP 143 (376)
T ss_pred HHHHHHHhcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCC
Confidence 3445556666788999988 6776666554211 0 0 13568888996 56644433
No 170
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=30.03 E-value=1.5e+02 Score=31.89 Aligned_cols=50 Identities=22% Similarity=0.123 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCeEEEEcCcchHHHHHHH---HHhcCCCCCCCEEEeccCCCCchh
Q 007781 407 GLFLFRKVPHFRVLVCGGDGTVGWVLNA---IDKQNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 407 a~~l~~~~~~~~Vvv~GGDGTV~~Vln~---L~~~~~~~~~plgILPlGTGNDfA 458 (590)
+.+.+++.+-+.++++|||||+.-+..- +.+.+ ...++--||-=--||+.
T Consensus 84 ~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~--~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 84 AAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKY--QGFNVIGLPGTIDNDIK 136 (338)
T ss_pred HHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcC--CCccEEEeeecccCCCc
Confidence 3444555556789999999999765332 22222 35889999965579987
No 171
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.20 E-value=62 Score=32.13 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhccCCC
Q 007781 41 LTIAYTAFQWRRNINLGWMKAIARSKKNPK 70 (590)
Q Consensus 41 ~~~~~~~~~~~r~~~~~~~~~~~r~k~~~~ 70 (590)
-=++|+++++.+.......++|...|.+.+
T Consensus 25 ~RlA~~ll~~~~~~~~~la~ai~~~~~~i~ 54 (195)
T TIGR00615 25 QRLAFHLLKRDPSEVLRLAQALLEAKENLR 54 (195)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHcCC
Confidence 346788899999999999999977665544
No 172
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=29.04 E-value=79 Score=26.78 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=17.4
Q ss_pred CcchhHHHHHHHH-HHHHHHHHHHHH
Q 007781 23 TESRLFILSCFIA-ALIGILTIAYTA 47 (590)
Q Consensus 23 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 47 (590)
+-.++.|++.|.- -++|+++|+|+.
T Consensus 17 ~yl~~sI~s~l~Cc~PlGi~Ai~~s~ 42 (82)
T PF04505_consen 17 DYLVLSIFSTLCCCWPLGIVAIVYSS 42 (82)
T ss_pred CceeHHHHHHHHHHhhHHHHHheech
Confidence 3355666666643 468999999986
No 173
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=28.06 E-value=3.6e+02 Score=29.03 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCc-----hHHHHHHHhC---CCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGP-----EVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p-----~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++|+..+..- ..++.+.|+.......+|+-.. ..| +.+.+++++. +.+.||++|| |++-.+.-++
T Consensus 26 ~~~lvvtd~~~~---~~~v~~~L~~~g~~~~~f~~v~-~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG-GS~iD~AKai 100 (347)
T cd08184 26 DPAVFFVDDVFQ---GKDLISRLPVESEDMIIWVDAT-EEPKTDQIDALTAQVKSFDGKLPCAIVGIGG-GSTLDVAKAV 100 (347)
T ss_pred CeEEEEECcchh---hhHHHHHHHhcCCcEEEEcCCC-CCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC-cHHHHHHHHH
Confidence 567776643221 1345555544322334453121 222 2444566665 5678898988 5555554443
Q ss_pred H---hcC------------CCCCCCEEEecc--CCCCchhhhh
Q 007781 436 D---KQN------------FVSPPPVAILPA--GTGNDLARVL 461 (590)
Q Consensus 436 ~---~~~------------~~~~~plgILPl--GTGNDfAR~L 461 (590)
. ..+ ....+|+..||. |||--..+.-
T Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~a 143 (347)
T cd08184 101 SNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTA 143 (347)
T ss_pred HHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcE
Confidence 2 111 012367899995 8887665544
No 174
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=27.56 E-value=2e+02 Score=28.92 Aligned_cols=79 Identities=9% Similarity=-0.120 Sum_probs=47.8
Q ss_pred hhHHHHHHHHhhCCCcEE-EEeccCCchHHHHHHHhCCCC--eEEEEcCcchHHHHHHHHHhcCCC-CCCCEEEeccCCC
Q 007781 379 GDSLRQRLNLLLNPVQVV-ELSSTQGPEVGLFLFRKVPHF--RVLVCGGDGTVGWVLNAIDKQNFV-SPPPVAILPAGTG 454 (590)
Q Consensus 379 g~~~~~~l~~lL~~~qV~-~l~~t~~p~~a~~l~~~~~~~--~Vvv~GGDGTV~~Vln~L~~~~~~-~~~plgILPlGTG 454 (590)
|.++.+.|++.+....|| |+...+-|....+.+.+.+-+ .|+.+||+.|+..+.++..+.+.. ..--+|++..-..
T Consensus 43 G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~ 122 (218)
T PRK13305 43 GLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTLDDA 122 (218)
T ss_pred CHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCcchH
Confidence 346777788776566674 766555565444445555544 577789999999999976542211 1235777533333
Q ss_pred Cch
Q 007781 455 NDL 457 (590)
Q Consensus 455 NDf 457 (590)
.++
T Consensus 123 ~~l 125 (218)
T PRK13305 123 RDW 125 (218)
T ss_pred HHH
Confidence 444
No 175
>PLN02884 6-phosphofructokinase
Probab=26.60 E-value=1.2e+02 Score=33.59 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHh----cCCCCCCCEEEeccCCCCchh
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK----QNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~----~~~~~~~plgILPlGTGNDfA 458 (590)
.+.+.+++.+-+.++++|||||+.-+.. |.+ .+ ...++--||-===||+.
T Consensus 134 ~i~~~L~~~~Id~LivIGGdgS~~~a~~-L~~~~~~~g--~~i~vIGIPkTIDNDi~ 187 (411)
T PLN02884 134 DIVDSIEARGINMLFVLGGNGTHAGANA-IHNECRKRK--MKVSVVGVPKTIDNDIL 187 (411)
T ss_pred HHHHHHHHcCCCEEEEECCchHHHHHHH-HHHHHHHcC--CCceEEeccccccCCCc
Confidence 3444455556678999999999976532 222 22 24788889987789986
No 176
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=26.53 E-value=2.3e+02 Score=30.93 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC----cEE----EEec---cCCc-h---HHHHHHHhCCC---CeEEEEcC
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVV----ELSS---TQGP-E---VGLFLFRKVPH---FRVLVCGG 424 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~----qV~----~l~~---t~~p-~---~a~~l~~~~~~---~~Vvv~GG 424 (590)
.++++||.++.-..- ...+.+.+...|+.. .+| .+.. +... + ++.+.+.+.+. +.||+.||
T Consensus 30 ~~r~lvVtD~~v~~~-~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGG 108 (369)
T cd08198 30 RPKVLVVIDSGVAQA-NPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGG 108 (369)
T ss_pred CCeEEEEECcchHHh-hhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECC
Confidence 367888888755431 112445566665432 222 1111 1111 2 22233334332 46777877
Q ss_pred cchHHHHHHHHHhcCCCCCCCEEEeccC
Q 007781 425 DGTVGWVLNAIDKQNFVSPPPVAILPAG 452 (590)
Q Consensus 425 DGTV~~Vln~L~~~~~~~~~plgILPlG 452 (590)
|++..+.-.+... +...+|+-.+|.=
T Consensus 109 -G~v~D~ag~vA~~-~~rGip~I~IPTT 134 (369)
T cd08198 109 -GAVLDAVGYAAAT-AHRGVRLIRIPTT 134 (369)
T ss_pred -hHHHHHHHHHHHH-hcCCCCEEEECCC
Confidence 8999888777543 2346888888853
No 177
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=26.11 E-value=1.5e+02 Score=26.71 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHH---hhCCCcE--EEEeccCC--------chHHHHHHHhC----CCCeEEEEcCc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNL---LLNPVQV--VELSSTQG--------PEVGLFLFRKV----PHFRVLVCGGD 425 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~---lL~~~qV--~~l~~t~~--------p~~a~~l~~~~----~~~~Vvv~GGD 425 (590)
.++++||+=|......-......|+. -|..+.+ |.+..... +..+..+.+.+ .++.+|.+|=|
T Consensus 9 ~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKD 88 (118)
T PF13778_consen 9 KNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKD 88 (118)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCC
Confidence 35667777776665443333444443 2333444 44432211 12223444443 25779999999
Q ss_pred chHH
Q 007781 426 GTVG 429 (590)
Q Consensus 426 GTV~ 429 (590)
|++-
T Consensus 89 G~vK 92 (118)
T PF13778_consen 89 GGVK 92 (118)
T ss_pred CcEE
Confidence 9753
No 178
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=26.10 E-value=49 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=20.2
Q ss_pred cccccCCCCCCCCCCCCcccCCccccccccccccc
Q 007781 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAA 128 (590)
Q Consensus 94 ~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~v 128 (590)
||..|..+|..+.+- ....+.|..|++..
T Consensus 2 FCp~Cg~~l~~~~~~------~~~~~vC~~Cg~~~ 30 (52)
T smart00661 2 FCPKCGNMLIPKEGK------EKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCCCCccccccCC------CCCEEECCcCCCeE
Confidence 899999988754321 12367999999753
No 179
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=26.04 E-value=3.3e+02 Score=33.06 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhC--C--CcEEEEec-cCCc-----hHHHHHHHhCCCCeEEEEcCcchHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLN--P--VQVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVL 432 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~--~--~qV~~l~~-t~~p-----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vl 432 (590)
.++++||..+..-.. .+...+...|. . .+++.+.. ...| +++.+++++.+.+.||++|| |++-.+.
T Consensus 480 ~~~~lvVtd~~~~~~---g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~A 555 (862)
T PRK13805 480 KKRAFIVTDRFMVEL---GYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGG-GSPMDAA 555 (862)
T ss_pred CCEEEEEECcchhhc---chHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHH
Confidence 467888876543221 24555555554 2 23322211 1122 23445566666788998988 6666655
Q ss_pred HHH
Q 007781 433 NAI 435 (590)
Q Consensus 433 n~L 435 (590)
-.+
T Consensus 556 K~i 558 (862)
T PRK13805 556 KIM 558 (862)
T ss_pred HHH
Confidence 444
No 180
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=25.51 E-value=41 Score=23.33 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=19.9
Q ss_pred ccccccCCCCCCCCCCCCcccCCccccccccccccc
Q 007781 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAA 128 (590)
Q Consensus 93 ~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~v 128 (590)
..|.-|+..|+-..| ...++|..|..+.
T Consensus 2 ~~C~~C~t~L~yP~g--------A~~vrCs~C~~vt 29 (31)
T TIGR01053 2 VVCGGCRTLLMYPRG--------ASSVRCALCQTVN 29 (31)
T ss_pred cCcCCCCcEeecCCC--------CCeEECCCCCeEe
Confidence 368999999874443 2357999998653
No 181
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=25.45 E-value=42 Score=22.22 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=16.0
Q ss_pred ccccCCCCCCCCCCCCcccCCccccccccccc
Q 007781 95 CCVCLKSMSPSQTLGPMVASDSFIHRCSICGA 126 (590)
Q Consensus 95 C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~ 126 (590)
|.-|+..|.-..| .+..+|..|..
T Consensus 1 C~~Cr~~L~yp~G--------A~sVrCa~C~~ 24 (25)
T PF06943_consen 1 CGGCRTLLMYPRG--------APSVRCACCHT 24 (25)
T ss_pred CCCCCceEEcCCC--------CCCeECCccCc
Confidence 6778887763333 23469999975
No 182
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=25.39 E-value=28 Score=32.71 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=15.9
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAA 127 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~ 127 (590)
..+||+||. .+++ |.|..||..
T Consensus 117 ~r~fCaVCG--~~S~-------------ysC~~CG~k 138 (156)
T KOG3362|consen 117 LRKFCAVCG--YDSK-------------YSCVNCGTK 138 (156)
T ss_pred cchhhhhcC--CCch-------------hHHHhcCCc
Confidence 456999999 4432 589999853
No 183
>PRK03202 6-phosphofructokinase; Provisional
Probab=25.21 E-value=1.3e+02 Score=32.06 Aligned_cols=46 Identities=28% Similarity=0.314 Sum_probs=33.7
Q ss_pred HHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhh
Q 007781 409 FLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 409 ~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR 459 (590)
+.+++.+-+.++++|||||+.-+. .|.+ ...++--||.===||+.-
T Consensus 87 ~~l~~~~Id~Li~IGGd~s~~~a~-~L~e----~~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 87 ENLKKLGIDALVVIGGDGSYMGAK-RLTE----HGIPVIGLPGTIDNDIAG 132 (320)
T ss_pred HHHHHcCCCEEEEeCChHHHHHHH-HHHh----cCCcEEEecccccCCCCC
Confidence 334444557899999999998763 4554 257888899877899873
No 184
>PRK00536 speE spermidine synthase; Provisional
Probab=24.81 E-value=47 Score=34.44 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=10.7
Q ss_pred eEEEEcCc-chHHHHHHH
Q 007781 418 RVLVCGGD-GTVGWVLNA 434 (590)
Q Consensus 418 ~Vvv~GGD-GTV~~Vln~ 434 (590)
.+|+.||| ||+.|||.-
T Consensus 76 VLIiGGGDGg~~REvLkh 93 (262)
T PRK00536 76 VLIVDGFDLELAHQLFKY 93 (262)
T ss_pred EEEEcCCchHHHHHHHCc
Confidence 35567777 577776543
No 185
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=24.37 E-value=3.1e+02 Score=29.99 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=44.7
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC----cEEEEe-------ccCCc-hHHH---HHHHhCCC---CeEEEEcCc
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELS-------STQGP-EVGL---FLFRKVPH---FRVLVCGGD 425 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~----qV~~l~-------~t~~p-~~a~---~l~~~~~~---~~Vvv~GGD 425 (590)
++++||..+.--... ..+...+...|+.. .+++.. ..... +... +.+.+.+. +.||++||
T Consensus 43 ~r~liVtD~~v~~~~-~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGG- 120 (389)
T PRK06203 43 KKVLVVIDSGVLRAH-PDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGG- 120 (389)
T ss_pred CeEEEEECchHHHhh-hhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCC-
Confidence 678888876544311 12456666666432 223211 11221 2233 33444433 36777776
Q ss_pred chHHHHHHHHHhcCCCCCCCEEEecc
Q 007781 426 GTVGWVLNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 426 GTV~~Vln~L~~~~~~~~~plgILPl 451 (590)
|++..+.-.+... +....|+..||.
T Consensus 121 Gsv~D~ak~iA~~-~~rgip~I~IPT 145 (389)
T PRK06203 121 GAVLDMVGYAAAT-AHRGVRLIRIPT 145 (389)
T ss_pred cHHHHHHHHHHHH-hcCCCCEEEEcC
Confidence 8888887666432 124578888985
No 186
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=24.29 E-value=94 Score=27.40 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=19.0
Q ss_pred cchhHHHHHHHH--HHHHHHHHHHHHHHH
Q 007781 24 ESRLFILSCFIA--ALIGILTIAYTAFQW 50 (590)
Q Consensus 24 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 50 (590)
|---.+|-||.+ |.|-.|+|+|.++-+
T Consensus 6 ERVKlfFEwFLF~~AIFiAItIlYILLal 34 (117)
T PF07234_consen 6 ERVKLFFEWFLFFGAIFIAITILYILLAL 34 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457777765 788889999987543
No 187
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.15 E-value=5.4e+02 Score=23.61 Aligned_cols=114 Identities=11% Similarity=-0.027 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCCChhHHHH-HHHHhhC--CCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHH----
Q 007781 364 RPLLVFINKKSGAQRGDSLRQ-RLNLLLN--PVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAID---- 436 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~-~l~~lL~--~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~---- 436 (590)
++-+++.|+..-.. ++-. .+..+|. ..+|+++..-..+++..+.+.+.+.+.|.+++=|||--+.+..+.
T Consensus 2 ~~~v~~a~~g~D~H---d~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~ 78 (132)
T TIGR00640 2 RPRILVAKMGQDGH---DRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELD 78 (132)
T ss_pred CCEEEEEeeCCCcc---HHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHH
Confidence 34566777765322 2222 2334444 456766654456777777777777788999999986655555443
Q ss_pred hcCCCCCCCEEEeccC-CCC-chhh--hhccCCCCCCccccchHHHHHHHHHhc
Q 007781 437 KQNFVSPPPVAILPAG-TGN-DLAR--VLFWGGGLSSVERNGGLCTMLQHIEHA 486 (590)
Q Consensus 437 ~~~~~~~~plgILPlG-TGN-DfAR--~Lg~g~g~~~~~~~~~l~~il~~i~~a 486 (590)
+.+. . .+-|+-.| -.+ |++. .+|+..-|. +..++.+++..+.+.
T Consensus 79 ~~g~-~--~i~vivGG~~~~~~~~~l~~~Gvd~~~~---~gt~~~~i~~~l~~~ 126 (132)
T TIGR00640 79 KLGR-P--DILVVVGGVIPPQDFDELKEMGVAEIFG---PGTPIPESAIFLLKK 126 (132)
T ss_pred hcCC-C--CCEEEEeCCCChHhHHHHHHCCCCEEEC---CCCCHHHHHHHHHHH
Confidence 3221 1 23344444 223 3432 234322222 234677777766553
No 188
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=23.98 E-value=1.3e+02 Score=29.14 Aligned_cols=40 Identities=13% Similarity=0.337 Sum_probs=26.0
Q ss_pred HHHhCCCCeEEEEcCcchHHHHHHHHHhcCC-CCCCCEEEe
Q 007781 410 LFRKVPHFRVLVCGGDGTVGWVLNAIDKQNF-VSPPPVAIL 449 (590)
Q Consensus 410 l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~-~~~~plgIL 449 (590)
++-+..+..|+.-||=||+.|++..+.-... ....|+.++
T Consensus 92 ~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~ 132 (178)
T TIGR00730 92 MMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILF 132 (178)
T ss_pred HHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3333344457778999999999999853211 134577776
No 189
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=23.24 E-value=73 Score=32.73 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=40.2
Q ss_pred CCCCCcccccCCCCCc---CCCCCCCcceecccccccchhhhccCCCCCCCCCCCcCCCceeeCCccee
Q 007781 166 PSEASFCSYCEEPCSG---SFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICDLGPFRRLILSPLYVK 231 (590)
Q Consensus 166 ~~~~~~C~~C~k~c~~---~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~r~~IlPP~~i~ 231 (590)
....+.|..|.+...- .--+|..-|+|.-|+.++-.-++..++.- .--|..=.+-.-||||.|-.
T Consensus 129 rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G~~qm~v~sP-Cy~C~~~v~P~~IlPPr~~R 196 (278)
T PF15135_consen 129 RKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRGFAQMGVPSP-CYGCGNPVYPSRILPPRWDR 196 (278)
T ss_pred ccccccccccccccCCCccccccceeeeecccccccchhhhhcCCCCC-ccCCCCccCcccccCCCcCc
Confidence 3445678888776431 11234445788888888777766555442 22356666778899998754
No 190
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=23.16 E-value=57 Score=25.77 Aligned_cols=29 Identities=34% Similarity=0.742 Sum_probs=20.7
Q ss_pred cccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 94 ~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
+|.||..-+.+.+ .+.|..||+..| |+..
T Consensus 1 ~Cpv~~~~~~~~v-----------~~~Cp~cGipth--cS~e 29 (55)
T PF13824_consen 1 LCPVCKKDLPAHV-----------NFECPDCGIPTH--CSEE 29 (55)
T ss_pred CCCCCcccccccc-----------CCcCCCCCCcCc--cCHH
Confidence 5888887654322 369999999988 6654
No 191
>PRK09267 flavodoxin FldA; Validated
Probab=22.86 E-value=6.3e+02 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCC
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV 393 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~ 393 (590)
++++||+-...| ..+++.+.|.+.|...
T Consensus 2 mki~IiY~S~tG--nT~~vA~~Ia~~l~~~ 29 (169)
T PRK09267 2 AKIGIFFGSDTG--NTEDIAKMIQKKLGKD 29 (169)
T ss_pred CeEEEEEECCCC--hHHHHHHHHHHHhCCC
Confidence 468899966555 4567888888777543
No 192
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=22.75 E-value=31 Score=38.52 Aligned_cols=52 Identities=27% Similarity=0.472 Sum_probs=36.1
Q ss_pred CCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCc
Q 007781 76 PLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKD 139 (590)
Q Consensus 76 ~~~~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~ 139 (590)
+...=-|...+.. ..-|+||.....+.. ...++|.-|+--.|..|++-..++
T Consensus 155 ~~~~l~wD~~~~~---n~qc~vC~~g~~~~~---------NrmlqC~~C~~~fHq~Chqp~i~~ 206 (464)
T KOG4323|consen 155 PEASLDWDSGHKV---NLQCSVCYCGGPGAG---------NRMLQCDKCRQWYHQACHQPLIKD 206 (464)
T ss_pred cccccccCccccc---cceeeeeecCCcCcc---------ceeeeecccccHHHHHhccCCCCH
Confidence 4445566665553 234999998766421 245799999999999999876543
No 193
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.60 E-value=3e+02 Score=27.04 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE----EEEec-cCCchHHHH----HHHhCCCCeEEEEcCcchHHHHH
Q 007781 362 DARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV----VELSS-TQGPEVGLF----LFRKVPHFRVLVCGGDGTVGWVL 432 (590)
Q Consensus 362 ~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV----~~l~~-t~~p~~a~~----l~~~~~~~~Vvv~GGDGTV~~Vl 432 (590)
+.+++.+|..+......+.....-|+..+....+ ..+.. ....+.+.+ +++..+....|++++|.+...++
T Consensus 115 g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~ 194 (268)
T cd06273 115 GHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVICGNDVLALGAL 194 (268)
T ss_pred CCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHHHHH
Confidence 4567888765433222233334445555543221 01111 112222333 33322335677789999888899
Q ss_pred HHHHhcCCCCCCCEEEeccCC
Q 007781 433 NAIDKQNFVSPPPVAILPAGT 453 (590)
Q Consensus 433 n~L~~~~~~~~~plgILPlGT 453 (590)
.++.+.+...+.-|.|+-.+.
T Consensus 195 ~~l~~~g~~~p~~i~vig~d~ 215 (268)
T cd06273 195 YEARRLGLSVPEDLSIVGFDD 215 (268)
T ss_pred HHHHHcCCCCCCceEEEecCC
Confidence 999876643233577876663
No 194
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=22.56 E-value=40 Score=33.56 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=33.4
Q ss_pred CCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccC
Q 007781 402 QGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAG 452 (590)
Q Consensus 402 ~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlG 452 (590)
..+..+++...+.+-++||-.||..++.+-++.|.+.-......|-|+|.|
T Consensus 127 ~d~~~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~Gg 177 (201)
T PF03932_consen 127 PDPEEALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGG 177 (201)
T ss_dssp STHHHHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Confidence 345666666666677899999999988766666543211123467889887
No 195
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=22.09 E-value=56 Score=27.47 Aligned_cols=31 Identities=29% Similarity=0.624 Sum_probs=25.0
Q ss_pred CCcccccCCCCCcCCCCCCCcceecc--cccccchhhhcc
Q 007781 169 ASFCSYCEEPCSGSFLGGSPIWCCLW--CQRLVHVDCHNN 206 (590)
Q Consensus 169 ~~~C~~C~k~c~~~~~~g~~~~~C~W--C~~~vH~~C~~~ 206 (590)
...|.+|++..|. ...|.. |...+|.-|...
T Consensus 36 ~~~C~~C~~~~Ga-------~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGA-------CIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCe-------EEEEeCCCCCcEEChHHHcc
Confidence 4699999987442 368887 999999999865
No 196
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.79 E-value=1.5e+02 Score=27.98 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=25.8
Q ss_pred EEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhh
Q 007781 419 VLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 419 Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR 459 (590)
-+.++|+ |..+++..+.. -...+|-+-+|=+|| ||+.+
T Consensus 45 n~g~~G~-t~~~~~~~l~~-~~~~~pd~Vii~~G~-ND~~~ 82 (191)
T cd01836 45 LFAKTGA-TSADLLRQLAP-LPETRFDVAVISIGV-NDVTH 82 (191)
T ss_pred EEecCCc-CHHHHHHHHHh-cccCCCCEEEEEecc-cCcCC
Confidence 4577888 45667777764 122467788888886 88765
No 197
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=21.17 E-value=4.2e+02 Score=22.18 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=25.9
Q ss_pred CcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHH
Q 007781 393 VQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWV 431 (590)
Q Consensus 393 ~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~V 431 (590)
..++-+. ..-+......++......|+++||.++|+.=
T Consensus 51 ~PIll~~-~~l~~~~~~~l~~~~~~~v~iiGg~~~is~~ 88 (92)
T PF04122_consen 51 APILLVN-NSLPSSVKAFLKSLNIKKVYIIGGEGAISDS 88 (92)
T ss_pred CeEEEEC-CCCCHHHHHHHHHcCCCEEEEECCCCccCHH
Confidence 3443333 3456667777777767788899999998763
No 198
>PTZ00287 6-phosphofructokinase; Provisional
Probab=21.13 E-value=1.6e+02 Score=37.55 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=30.5
Q ss_pred HHHhCCCCeEEEEcCcchHHHHHHHHHh----cCCCCCCCEEEeccCCCCchhh
Q 007781 410 LFRKVPHFRVLVCGGDGTVGWVLNAIDK----QNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 410 l~~~~~~~~Vvv~GGDGTV~~Vln~L~~----~~~~~~~plgILPlGTGNDfAR 459 (590)
.+++.+-+.+||+|||||+..+. .|.+ .+ -+..|--+|.==-||+..
T Consensus 923 ~lk~l~ID~LVvIGGDgS~t~A~-~LaE~f~~~g--i~i~VIGVPkTIDNDL~~ 973 (1419)
T PTZ00287 923 TVTNLQLNGLVMPGSNVTITEAA-LLAEYFLEKK--IPTSVVGIPLTGSNNLIH 973 (1419)
T ss_pred HHHHhCCCEEEEECCchHHHHHH-HHHHHHHhcC--CCccEEEeCceeeCCCCC
Confidence 33444557899999999997653 2322 22 123377778766799975
No 199
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=21.02 E-value=4.2e+02 Score=26.15 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=41.4
Q ss_pred CCCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE--EEEeccCCchHHHHHHHhC-CCCeEEEEcCcchHHHHHHHHHhc
Q 007781 362 DARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV--VELSSTQGPEVGLFLFRKV-PHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 362 ~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV--~~l~~t~~p~~a~~l~~~~-~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
+.+++.++..+... .+....+.+++.+...++ .... ....++..+.+++. +....|++.+|.+...++.++...
T Consensus 130 g~~~i~~l~~~~~~--~~~~r~~g~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~dai~~~~d~~a~~~~~~~~~~ 206 (281)
T cd06325 130 DAKTVGVLYNPSEA--NSVVQVKELKKAAAKLGIEVVEAT-VSSSNDVQQAAQSLAGKVDAIYVPTDNTVASAMEAVVKV 206 (281)
T ss_pred CCcEEEEEeCCCCc--cHHHHHHHHHHHHHhCCCEEEEEe-cCCHHHHHHHHHHhcccCCEEEEcCchhHHhHHHHHHHH
Confidence 45777777655442 233344556655544332 1111 12333444444443 223577889999988888888765
Q ss_pred C
Q 007781 439 N 439 (590)
Q Consensus 439 ~ 439 (590)
.
T Consensus 207 ~ 207 (281)
T cd06325 207 A 207 (281)
T ss_pred H
Confidence 4
No 200
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=20.93 E-value=1.8e+02 Score=32.14 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=34.0
Q ss_pred HHHHHHhCCCCeEEEEcCcchHHHHHHH---HHhcCCCCCCCEEEeccCCCCchh
Q 007781 407 GLFLFRKVPHFRVLVCGGDGTVGWVLNA---IDKQNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 407 a~~l~~~~~~~~Vvv~GGDGTV~~Vln~---L~~~~~~~~~plgILPlGTGNDfA 458 (590)
+.+.+++.+-+.++++|||||+.-+..- +.+.+ ...++--||-===||+.
T Consensus 104 ~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g--~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 104 AAERLAADGVDILHTIGGDDTNTTAADLAAYLAENG--YDLTVVGLPKTIDNDVV 156 (403)
T ss_pred HHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhC--CCceEEEeeeeeeCCCC
Confidence 3444455556779999999999766332 22222 25789999987789985
No 201
>PRK13844 recombination protein RecR; Provisional
Probab=20.81 E-value=1.1e+02 Score=30.54 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhccCCC
Q 007781 42 TIAYTAFQWRRNINLGWMKAIARSKKNPK 70 (590)
Q Consensus 42 ~~~~~~~~~~r~~~~~~~~~~~r~k~~~~ 70 (590)
=++|+++++.+.......+++...|.+.+
T Consensus 30 Rla~~lL~~~~~~~~~la~~i~~~~~~i~ 58 (200)
T PRK13844 30 RLALYLLDKSPETAIAIANSLLDATANIK 58 (200)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 46788899999888888899877665544
No 202
>PRK05637 anthranilate synthase component II; Provisional
Probab=20.75 E-value=4.3e+02 Score=26.20 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=15.4
Q ss_pred hCCCCeEEEEcCcchHHHH
Q 007781 413 KVPHFRVLVCGGDGTVGWV 431 (590)
Q Consensus 413 ~~~~~~Vvv~GGDGTV~~V 431 (590)
...++.||+.||-|.+.+.
T Consensus 42 ~~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 42 AANPDLICLSPGPGHPRDA 60 (208)
T ss_pred hcCCCEEEEeCCCCCHHHh
Confidence 3456789999999999876
No 203
>PF15616 TerY-C: TerY-C metal binding domain
Probab=20.64 E-value=57 Score=30.32 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=11.0
Q ss_pred Ccceecccccccch
Q 007781 188 PIWCCLWCQRLVHV 201 (590)
Q Consensus 188 ~~~~C~WC~~~vH~ 201 (590)
....|.||++...-
T Consensus 104 ~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 104 GEVTCPWCGNEGSF 117 (131)
T ss_pred CCEECCCCCCeeee
Confidence 46899999987653
No 204
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=20.58 E-value=1.3e+02 Score=30.77 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=27.3
Q ss_pred CCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCC
Q 007781 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTG 454 (590)
Q Consensus 416 ~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTG 454 (590)
...|+++|-||++-.|+.+|.+ .|+--+|.-+|
T Consensus 174 ~~lIVvAGMEGaLPsvvagLvD------~PVIavPTsVG 206 (254)
T COG1691 174 DVLIVVAGMEGALPSVVAGLVD------VPVIAVPTSVG 206 (254)
T ss_pred CeEEEEcccccchHHHHHhccC------CCeEecccccc
Confidence 4568899999999999999974 67777887655
No 205
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=20.27 E-value=54 Score=30.38 Aligned_cols=26 Identities=23% Similarity=0.578 Sum_probs=19.9
Q ss_pred CcceecccccccchhhhccCCCCCCCCCCCcCC
Q 007781 188 PIWCCLWCQRLVHVDCHNNMSNETGDICDLGPF 220 (590)
Q Consensus 188 ~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~ 220 (590)
..|+|.||+..+|.+..+.. |.=|-+
T Consensus 96 ~~W~Cv~C~~~Y~GeK~C~~-------C~tGiY 121 (128)
T PF11682_consen 96 TDWHCVMCGNHYHGEKYCPK-------CGTGIY 121 (128)
T ss_pred ceEEEecCCCccCcCEecCC-------CCCccc
Confidence 47999999999999866532 766655
No 206
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=20.27 E-value=5.9e+02 Score=26.98 Aligned_cols=58 Identities=21% Similarity=0.175 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHh
Q 007781 380 DSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 380 ~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
..+.+.|++..-|..++.+......+....++....-+.|+..|++.|..++...+.+
T Consensus 136 ~~l~~~l~~ag~p~~~v~~~~~~~~~~~~~l~~~~~vd~v~~tGs~~~~~~v~~~~~~ 193 (367)
T cd06534 136 LALAELLQEAGLPPGVVNVVPGGGDEVGAALLSHPRVDKISFTGSTAVGKAIMKAAAE 193 (367)
T ss_pred HHHHHHHHhcCCCcCeEEEEEcCchhHHHHHhcCCCcCEEEEECCHHHHHHHHHHHhc
Confidence 3455556665546666666543332234444444334779999999999999887764
No 207
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=20.20 E-value=2.6e+02 Score=32.69 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHhCCCCeEEEEcCcchHHHHHH--H-HHhcCCCCCCCEEEeccCCCCchh
Q 007781 407 GLFLFRKVPHFRVLVCGGDGTVGWVLN--A-IDKQNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 407 a~~l~~~~~~~~Vvv~GGDGTV~~Vln--~-L~~~~~~~~~plgILPlGTGNDfA 458 (590)
+.+.+++.+-+.+|++|||||...+.- . +.+.+ .+.+|--+|-==-||+.
T Consensus 165 i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~--~~i~VIGIPKTIDNDL~ 217 (610)
T PLN03028 165 ALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAK--CKTKVVGVPVTLNGDLK 217 (610)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcC--CCceEEEeceeeeCCCC
Confidence 334455556678999999999876522 2 22222 35788888876689997
No 208
>COG4818 Predicted membrane protein [Function unknown]
Probab=20.17 E-value=96 Score=27.28 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 007781 25 SRLFILSCFIAALIGILTIAYTAFQ 49 (590)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (590)
++++.++|++.+.+|+++++..+.-
T Consensus 53 ~~iP~Ig~lls~~v~l~a~iLwlv~ 77 (105)
T COG4818 53 AFIPYIGWLLSGLVGLAAFILWLVC 77 (105)
T ss_pred HHhhhhHHHHHhHHHHHHHHHHHHH
Confidence 5677889999999998887766443
No 209
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=20.15 E-value=1.3e+02 Score=28.63 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=26.2
Q ss_pred HHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEec
Q 007781 411 FRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILP 450 (590)
Q Consensus 411 ~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILP 450 (590)
+.+..+..|++-||=||+.|+..++.. ..|+.+++
T Consensus 88 m~~~sda~IvlpGG~GTL~E~~~a~~~-----~kpv~~l~ 122 (159)
T TIGR00725 88 LVRSADVVVSVGGGYGTAIEILGAYAL-----GGPVVVLR 122 (159)
T ss_pred HHHHCCEEEEcCCchhHHHHHHHHHHc-----CCCEEEEE
Confidence 333344557778999999999999873 46888887
No 210
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=20.11 E-value=70 Score=23.80 Aligned_cols=30 Identities=27% Similarity=0.606 Sum_probs=23.0
Q ss_pred cccccCCCCCcCCCCCCCcceecccc-cccchhhhcc
Q 007781 171 FCSYCEEPCSGSFLGGSPIWCCLWCQ-RLVHVDCHNN 206 (590)
Q Consensus 171 ~C~~C~k~c~~~~~~g~~~~~C~WC~-~~vH~~C~~~ 206 (590)
.|+.|++++.+ .-|+|.-|. ..+..+|...
T Consensus 2 ~C~~C~~~i~g------~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPIVG------VRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCCcC------CEEECCCCCCCcCHHHHHCc
Confidence 59999886654 248999998 7788888764
Done!