Query 007781
Match_columns 590
No_of_seqs 382 out of 1639
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 10:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 4.3E-31 1.5E-35 274.0 15.8 186 361-580 6-194 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 2.3E-28 7.7E-33 256.9 12.1 183 363-579 24-210 (337)
3 2bon_A Lipid kinase; DAG kinas 99.9 2.2E-27 7.5E-32 249.0 13.4 182 363-579 29-215 (332)
4 3pfq_A PKC-B, PKC-beta, protei 99.8 2.1E-20 7.1E-25 213.2 4.6 135 65-225 22-164 (674)
5 1r79_A Diacylglycerol kinase, 99.7 4E-17 1.4E-21 137.1 5.6 71 138-220 3-83 (84)
6 2enn_A NPKC-theta, protein kin 99.1 1.1E-11 3.7E-16 102.8 1.7 61 69-142 13-75 (77)
7 2yuu_A NPKC-delta, protein kin 99.0 2.4E-10 8.1E-15 96.0 4.3 60 73-145 11-72 (83)
8 2enz_A NPKC-theta, protein kin 98.9 6E-10 2.1E-14 89.2 4.1 52 77-141 10-63 (65)
9 1faq_A RAF-1; transferase, ser 98.9 4E-10 1.4E-14 86.0 2.7 50 78-142 2-51 (52)
10 1ptq_A Protein kinase C delta 98.9 4.7E-10 1.6E-14 84.9 2.0 48 80-140 1-50 (50)
11 1y8f_A UNC-13 homolog A, MUNC1 98.9 6.5E-10 2.2E-14 89.3 2.7 53 77-142 11-65 (66)
12 2db6_A SH3 and cysteine rich d 98.8 7.1E-10 2.4E-14 91.1 1.9 56 75-143 13-71 (74)
13 2eli_A Protein kinase C alpha 98.8 1.7E-09 5.7E-14 91.2 3.8 56 75-143 13-70 (85)
14 3uej_A NPKC-delta, protein kin 98.8 5.2E-10 1.8E-14 89.5 0.2 54 77-143 7-62 (65)
15 2fnf_X Putative RAS effector N 98.8 3.6E-09 1.2E-13 86.4 3.8 52 76-141 20-72 (72)
16 1rfh_A RAS association (ralgds 98.7 2.6E-09 8.8E-14 83.9 1.4 51 77-141 8-59 (59)
17 2row_A RHO-associated protein 98.7 2.2E-09 7.6E-14 89.9 0.3 57 75-142 20-81 (84)
18 2an1_A Putative kinase; struct 98.6 3.2E-08 1.1E-12 101.3 6.8 108 363-488 5-121 (292)
19 1yt5_A Inorganic polyphosphate 98.5 6.9E-08 2.4E-12 97.4 5.7 105 365-496 2-106 (258)
20 1u0t_A Inorganic polyphosphate 98.5 2.4E-07 8.3E-12 95.7 9.5 116 363-495 4-140 (307)
21 3ky9_A Proto-oncogene VAV; cal 98.5 4.8E-08 1.6E-12 109.6 4.2 79 52-145 492-572 (587)
22 4b6d_A RAC GTPase-activating p 98.5 4.7E-08 1.6E-12 77.2 2.5 52 78-142 7-59 (61)
23 2i2c_A Probable inorganic poly 98.4 5.5E-07 1.9E-11 91.5 9.6 103 364-497 1-104 (272)
24 2enz_A NPKC-theta, protein kin 98.3 6.4E-07 2.2E-11 71.5 4.7 55 150-217 10-64 (65)
25 2vrw_B P95VAV, VAV1, proto-onc 98.3 3.3E-07 1.1E-11 97.9 4.0 77 52-143 320-398 (406)
26 1ptq_A Protein kinase C delta 98.2 8E-07 2.7E-11 66.9 4.4 49 153-210 1-49 (50)
27 1y8f_A UNC-13 homolog A, MUNC1 98.1 1.3E-06 4.4E-11 69.9 3.1 52 150-210 11-62 (66)
28 2eli_A Protein kinase C alpha 98.0 3.7E-06 1.2E-10 70.7 4.8 52 150-210 15-66 (85)
29 2enn_A NPKC-theta, protein kin 98.0 2.7E-06 9.1E-11 70.2 3.8 52 150-210 21-72 (77)
30 2yuu_A NPKC-delta, protein kin 98.0 5E-06 1.7E-10 69.5 4.8 52 150-210 15-66 (83)
31 1kbe_A Kinase suppressor of RA 98.0 3.6E-06 1.2E-10 63.3 3.4 44 78-137 3-46 (49)
32 2fnf_X Putative RAS effector N 98.0 3.8E-06 1.3E-10 68.4 3.7 49 150-210 21-70 (72)
33 3uej_A NPKC-delta, protein kin 98.0 4.4E-06 1.5E-10 66.5 3.6 52 150-210 7-58 (65)
34 1faq_A RAF-1; transferase, ser 97.9 3.7E-06 1.3E-10 63.7 2.7 46 152-210 3-48 (52)
35 1r79_A Diacylglycerol kinase, 97.9 4.7E-06 1.6E-10 69.8 3.2 57 76-142 24-80 (84)
36 1rfh_A RAS association (ralgds 97.9 3.8E-06 1.3E-10 65.7 2.4 49 150-210 8-57 (59)
37 2row_A RHO-associated protein 97.9 8.1E-06 2.8E-10 68.3 4.1 54 150-210 22-78 (84)
38 2db6_A SH3 and cysteine rich d 97.8 2.8E-06 9.6E-11 69.5 0.4 51 150-209 15-65 (74)
39 1kbe_A Kinase suppressor of RA 97.8 1.5E-05 5E-10 60.0 3.4 46 150-209 2-47 (49)
40 3cxl_A N-chimerin; SH2, RHO-GA 97.7 8.4E-06 2.9E-10 88.9 2.4 53 77-142 207-261 (463)
41 4b6d_A RAC GTPase-activating p 97.6 2.1E-05 7.1E-10 61.9 2.8 50 151-210 7-56 (61)
42 3pfq_A PKC-B, PKC-beta, protei 97.4 5.4E-05 1.8E-09 86.1 3.1 54 75-141 98-153 (674)
43 3afo_A NADH kinase POS5; alpha 97.1 0.00064 2.2E-08 72.3 6.9 68 416-497 115-182 (388)
44 2vrw_B P95VAV, VAV1, proto-onc 96.4 0.002 7E-08 68.4 4.5 50 150-208 344-393 (406)
45 3cxl_A N-chimerin; SH2, RHO-GA 96.0 0.0034 1.2E-07 68.2 3.9 51 151-210 208-258 (463)
46 3ky9_A Proto-oncogene VAV; cal 95.9 0.0042 1.4E-07 69.4 4.4 50 150-208 516-565 (587)
47 1z0s_A Probable inorganic poly 93.9 0.075 2.6E-06 53.9 6.3 75 364-458 30-106 (278)
48 3pfn_A NAD kinase; structural 89.9 0.49 1.7E-05 49.7 7.0 66 416-496 109-174 (365)
49 1v5n_A PDI-like hypothetical p 87.9 0.41 1.4E-05 40.1 3.8 55 68-137 25-80 (89)
50 1v5n_A PDI-like hypothetical p 77.2 0.96 3.3E-05 37.8 1.9 32 169-206 47-78 (89)
51 2kwj_A Zinc finger protein DPF 73.9 1.3 4.5E-05 38.5 1.9 86 93-205 2-89 (114)
52 4ayb_P DNA-directed RNA polyme 73.2 2.2 7.7E-05 31.2 2.6 34 171-204 5-38 (48)
53 2ysm_A Myeloid/lymphoid or mix 71.7 5.7 0.00019 34.0 5.5 80 91-205 6-85 (111)
54 3v43_A Histone acetyltransfera 64.4 3.1 0.00011 36.0 2.3 87 93-205 6-93 (112)
55 1wil_A KIAA1045 protein; ring 61.3 3.9 0.00013 33.8 2.1 36 166-207 12-47 (89)
56 3iv7_A Alcohol dehydrogenase I 58.2 19 0.00064 37.5 7.3 80 363-451 37-120 (364)
57 2ct0_A Non-SMC element 1 homol 58.0 2.5 8.5E-05 34.0 0.4 32 91-135 14-45 (74)
58 2lri_C Autoimmune regulator; Z 57.9 6.7 0.00023 30.7 2.9 33 165-205 8-40 (66)
59 3jzd_A Iron-containing alcohol 57.5 16 0.00055 37.8 6.7 80 363-451 36-121 (358)
60 1o2d_A Alcohol dehydrogenase, 55.6 58 0.002 33.6 10.6 91 364-457 41-156 (371)
61 3hl0_A Maleylacetate reductase 55.3 26 0.00088 36.2 7.8 80 363-451 34-119 (353)
62 2yql_A PHD finger protein 21A; 55.1 7.3 0.00025 29.2 2.6 34 164-205 4-37 (56)
63 4gne_A Histone-lysine N-methyl 54.7 7.9 0.00027 33.4 3.1 71 92-207 15-87 (107)
64 1oj7_A Hypothetical oxidoreduc 54.2 49 0.0017 34.6 9.9 92 364-458 51-168 (408)
65 1sg6_A Pentafunctional AROM po 54.1 7.9 0.00027 40.7 3.6 90 363-458 36-148 (393)
66 3nw0_A Non-structural maintena 52.7 3.8 0.00013 40.3 0.8 33 91-136 179-211 (238)
67 1wil_A KIAA1045 protein; ring 52.3 4.4 0.00015 33.4 1.0 32 93-136 16-47 (89)
68 3uhj_A Probable glycerol dehyd 52.0 16 0.00054 38.4 5.5 80 364-451 53-138 (387)
69 2yt5_A Metal-response element- 48.4 10 0.00035 29.2 2.6 36 167-205 4-39 (66)
70 1pfk_A Phosphofructokinase; tr 45.0 35 0.0012 34.9 6.7 49 406-459 85-133 (320)
71 2ct0_A Non-SMC element 1 homol 43.7 12 0.00041 30.0 2.3 41 170-217 16-57 (74)
72 1we9_A PHD finger family prote 43.5 13 0.00045 28.4 2.5 37 91-137 5-41 (64)
73 4grd_A N5-CAIR mutase, phospho 43.5 70 0.0024 29.8 7.8 79 365-453 14-100 (173)
74 1f62_A Transcription factor WS 43.4 13 0.00044 27.1 2.3 31 170-205 1-31 (51)
75 2gru_A 2-deoxy-scyllo-inosose 42.3 36 0.0012 35.2 6.4 83 363-451 34-128 (368)
76 1zxx_A 6-phosphofructokinase; 41.4 36 0.0012 34.8 6.1 49 406-459 84-132 (319)
77 1wev_A Riken cDNA 1110020M19; 40.4 13 0.00045 30.6 2.2 34 93-135 17-50 (88)
78 3bfj_A 1,3-propanediol oxidore 40.2 86 0.0029 32.4 9.0 92 363-457 33-150 (387)
79 3ors_A N5-carboxyaminoimidazol 39.4 78 0.0027 29.2 7.4 80 365-454 5-92 (163)
80 2puy_A PHD finger protein 21A; 38.1 19 0.00065 27.3 2.6 29 169-205 5-33 (60)
81 2hig_A 6-phospho-1-fructokinas 37.7 37 0.0013 36.8 5.7 51 406-458 180-233 (487)
82 2yt5_A Metal-response element- 37.2 16 0.00054 28.1 2.1 35 92-135 6-40 (66)
83 2l5u_A Chromodomain-helicase-D 36.8 17 0.00056 27.8 2.1 31 168-206 10-40 (61)
84 3nw0_A Non-structural maintena 36.7 15 0.00051 36.0 2.2 32 169-207 180-211 (238)
85 1mm2_A MI2-beta; PHD, zinc fin 36.5 18 0.00063 27.6 2.3 30 168-205 8-37 (61)
86 3okf_A 3-dehydroquinate syntha 36.4 59 0.002 34.1 7.0 83 363-451 62-157 (390)
87 3o70_A PHD finger protein 13; 35.6 16 0.00055 28.6 1.9 35 91-137 18-52 (68)
88 3ce9_A Glycerol dehydrogenase; 35.5 54 0.0019 33.4 6.4 81 364-454 35-123 (354)
89 2lnd_A De novo designed protei 35.4 21 0.0007 29.2 2.4 49 360-413 48-97 (112)
90 1xwh_A Autoimmune regulator; P 35.3 22 0.00075 27.5 2.6 30 168-205 7-36 (66)
91 2ku3_A Bromodomain-containing 34.8 21 0.00073 28.2 2.5 36 167-205 14-49 (71)
92 1we9_A PHD finger family prote 33.5 25 0.00086 26.7 2.7 36 167-206 4-39 (64)
93 4b4k_A N5-carboxyaminoimidazol 31.0 97 0.0033 29.0 6.6 82 360-451 18-108 (181)
94 1fp0_A KAP-1 corepressor; PHD 30.8 25 0.00084 29.2 2.3 30 168-205 24-53 (88)
95 4hf7_A Putative acylhydrolase; 30.8 31 0.001 31.9 3.3 40 421-462 57-96 (209)
96 1wee_A PHD finger family prote 30.7 21 0.00073 28.0 1.9 36 91-137 15-50 (72)
97 3lqh_A Histone-lysine N-methyl 30.5 18 0.00061 34.1 1.6 36 93-135 3-38 (183)
98 2ywx_A Phosphoribosylaminoimid 30.4 97 0.0033 28.4 6.4 65 381-451 13-82 (157)
99 2ro1_A Transcription intermedi 30.3 22 0.00075 33.5 2.2 29 169-205 2-30 (189)
100 2k16_A Transcription initiatio 29.9 9.9 0.00034 30.1 -0.3 35 91-136 17-51 (75)
101 4a3s_A 6-phosphofructokinase; 29.3 70 0.0024 32.6 5.9 48 406-458 84-131 (319)
102 1mm2_A MI2-beta; PHD, zinc fin 28.6 30 0.001 26.4 2.3 30 92-135 9-38 (61)
103 3ox4_A Alcohol dehydrogenase 2 28.5 79 0.0027 32.8 6.3 91 363-457 31-146 (383)
104 3lp6_A Phosphoribosylaminoimid 28.4 1.3E+02 0.0044 28.1 6.9 81 365-455 9-97 (174)
105 1wep_A PHF8; structural genomi 27.8 17 0.0006 29.1 0.8 35 91-136 11-45 (79)
106 1xwh_A Autoimmune regulator; P 27.1 29 0.00098 26.8 2.0 30 92-135 8-37 (66)
107 2ku3_A Bromodomain-containing 26.6 25 0.00084 27.9 1.5 36 91-135 15-50 (71)
108 2ri7_A Nucleosome-remodeling f 26.6 12 0.00041 34.4 -0.4 34 91-135 7-40 (174)
109 1f62_A Transcription factor WS 26.4 19 0.00066 26.1 0.8 31 94-135 2-32 (51)
110 2k16_A Transcription initiatio 26.2 26 0.00088 27.6 1.6 35 167-206 16-50 (75)
111 3lqh_A Histone-lysine N-methyl 26.2 36 0.0012 32.0 2.8 36 169-205 2-37 (183)
112 1jq5_A Glycerol dehydrogenase; 26.1 86 0.0029 32.1 6.0 80 364-451 32-118 (370)
113 1wev_A Riken cDNA 1110020M19; 25.7 30 0.001 28.4 2.0 34 169-205 16-49 (88)
114 3clh_A 3-dehydroquinate syntha 25.6 1.1E+02 0.0036 31.2 6.6 83 363-451 26-119 (343)
115 3o36_A Transcription intermedi 24.3 35 0.0012 31.7 2.4 29 169-205 4-32 (184)
116 2l43_A N-teminal domain from h 24.2 33 0.0011 28.2 2.0 35 168-205 24-58 (88)
117 2jmi_A Protein YNG1, ING1 homo 24.0 40 0.0014 28.0 2.4 34 90-136 24-60 (90)
118 1u11_A PURE (N5-carboxyaminoim 23.9 2.1E+02 0.0071 26.8 7.5 80 365-454 23-110 (182)
119 1zbd_B Rabphilin-3A; G protein 23.8 43 0.0015 29.9 2.7 37 168-207 54-90 (134)
120 2f48_A Diphosphate--fructose-6 23.4 97 0.0033 34.1 6.0 50 408-458 159-210 (555)
121 1wem_A Death associated transc 22.2 22 0.00075 28.2 0.4 34 91-136 15-48 (76)
122 2x9a_A Attachment protein G3P; 21.7 23 0.00077 27.5 0.4 11 418-428 40-50 (65)
123 3kuu_A Phosphoribosylaminoimid 20.9 1.9E+02 0.0065 26.9 6.5 68 365-436 14-89 (174)
124 3qbe_A 3-dehydroquinate syntha 20.8 80 0.0027 32.8 4.5 81 364-451 44-137 (368)
125 3oow_A Phosphoribosylaminoimid 20.8 1.9E+02 0.0065 26.7 6.5 68 381-454 19-94 (166)
126 3lft_A Uncharacterized protein 20.6 1.6E+02 0.0053 28.4 6.5 76 361-439 131-209 (295)
127 1twd_A Copper homeostasis prot 20.5 54 0.0019 32.5 2.9 50 402-452 128-177 (256)
128 2bdq_A Copper homeostasis prot 20.2 33 0.0011 33.4 1.3 51 402-452 133-185 (224)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=99.97 E-value=4.3e-31 Score=274.01 Aligned_cols=186 Identities=21% Similarity=0.258 Sum_probs=138.6
Q ss_pred CCCCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC--CCCeEEEEcCcchHHHHHHHHHh
Q 007781 361 PDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV--PHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 361 ~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~--~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
..+++++||+||+||++++.++++.++.+|+...+ +++..|+.++++.++++++ +.+.||++||||||++|+|+|..
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~v~~~l~~ 85 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAP 85 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHHHHHHHhh
Confidence 34789999999999999988888888888876443 5666688999999988875 45789999999999999999986
Q ss_pred cCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEe
Q 007781 438 QNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLG 517 (590)
Q Consensus 438 ~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~s 517 (590)
.+ ..+|||+||+||||||||+||++. ++.++++.+.++..+.+|.+.+ +.+||+|++|
T Consensus 86 ~~--~~~~l~iiP~Gt~N~~ar~lg~~~---------~~~~a~~~i~~g~~~~iDlg~v-----------~~~~F~~~~~ 143 (304)
T 3s40_A 86 LE--IRPTLAIIPGGTCNDFSRTLGVPQ---------NIAEAAKLITKEHVKPVDVAKA-----------NGQHFLNFWG 143 (304)
T ss_dssp CS--SCCEEEEEECSSCCHHHHHTTCCS---------SHHHHHHHHTTCCEEEEEEEEE-----------TTEEESSEEE
T ss_pred CC--CCCcEEEecCCcHHHHHHHcCCCc---------cHHHHHHHHHhCCeEEEEEEEE-----------CCEEEEEEEe
Confidence 32 468999999999999999999873 4677888888899999998776 2479999999
Q ss_pred cchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEEE
Q 007781 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEV 580 (590)
Q Consensus 518 iG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~~ 580 (590)
+||||+|+.+++..+ ++.+|+++|++++++.+++ +++++++|++||+.++.
T Consensus 144 ~G~da~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~----~~~~~~~i~~dg~~~~~ 194 (304)
T 3s40_A 144 IGLVSEVSNNIDAEE--------KAKLGKIGYYLSTIRTVKN----AETFPVKITYDGQVYED 194 (304)
T ss_dssp EC--------------------------CHHHHTTTC----------CCEEEEEEETTEEEEE
T ss_pred ehHHHHHHHhcCHHH--------hhcCCchHHHHHHHHHHhh----cCCceEEEEECCEEEEe
Confidence 999999998876321 3568999999999998874 57899999999987653
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=99.95 E-value=2.3e-28 Score=256.87 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=142.8
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
+++++||+||.||++++.++++.++.+|...++ +.+..|+.++++.++++++ +.+.||++||||||++|+++|.+.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~ 103 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK 103 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHhC
Confidence 568999999999999888888889988876654 5566677778888877654 357899999999999999999643
Q ss_pred CCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCcEEEEEEec
Q 007781 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (590)
Q Consensus 439 ~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~~f~N~~si 518 (590)
...+|||+||+||+|||||.||++. ++.++++.+.++..+.+|.+++ +.++|+|++++
T Consensus 104 --~~~~pl~iIP~GT~N~lAr~Lg~~~---------~~~~al~~i~~g~~~~iD~g~v-----------~~r~fl~~~~~ 161 (337)
T 2qv7_A 104 --PNRPKLGVIPMGTVNDFGRALHIPN---------DIMGALDVIIEGHSTKVDIGKM-----------NNRYFINLAAG 161 (337)
T ss_dssp --SSCCEEEEEECSSCCHHHHHTTCCS---------SHHHHHHHHHHTCEEEEEEEEE-----------TTEEESSEEEE
T ss_pred --CCCCcEEEecCCcHhHHHHHcCCCC---------CHHHHHHHHHcCCcEEEEEEEE-----------CCEEEEEEeee
Confidence 2578999999999999999999863 3677788888888889998765 24799999999
Q ss_pred chhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEE
Q 007781 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIE 579 (590)
Q Consensus 519 G~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~ 579 (590)
||||+|+.+++..+ ++.+|+++|++.++++++. .++++++|++||+.++
T Consensus 162 G~~a~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~----~~~~~~~i~~dg~~~~ 210 (337)
T 2qv7_A 162 GQLTQVSYETPSKL--------KSIVGPFAYYIKGFEMLPQ----MKAVDLRIEYDGNVFQ 210 (337)
T ss_dssp ECBCC---------------------CGGGSCCCTTTTGGG----BCCEEEEEEETTEEEE
T ss_pred cccHHHHHHhhHHH--------HhccChHHHHHHHHHHHHh----CCCccEEEEECCEEEE
Confidence 99999998876422 3567999999999888763 5788999999999865
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=99.94 E-value=2.2e-27 Score=249.03 Aligned_cols=182 Identities=19% Similarity=0.161 Sum_probs=137.4
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHhC---CCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
+++++||+||.||++ +.++.+...|....+ +.+..|+.++++.++++++ +.+.|||+||||||++|+++|.+.
T Consensus 29 ~~~~~vi~Np~sg~~---~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 29 FPASLLILNGKSTDN---LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQC 105 (332)
T ss_dssp -CCEEEEECSSSTTC---HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCC---chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhhc
Confidence 578999999999987 456667777765433 4555566777777766553 467899999999999999999854
Q ss_pred CCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEEEEccCCcccCCCc-EEEEEEe
Q 007781 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPK-FLNNYLG 517 (590)
Q Consensus 439 ~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~~~~~~G~~~~~~~-~f~N~~s 517 (590)
.....+|||+||+||+|||||.|+++. ++.++++.+.++..+.+|.+.+ +.+ +|+|++|
T Consensus 106 ~~~~~~plgiiP~Gt~N~fa~~l~i~~---------~~~~al~~i~~g~~~~iDlg~v-----------~~r~~fl~~~~ 165 (332)
T 2bon_A 106 EGDDIPALGILPLGTANDFATSVGIPE---------ALDKALKLAIAGDAIAIDMAQV-----------NKQTCFINMAT 165 (332)
T ss_dssp CSSCCCEEEEEECSSSCHHHHHTTCCS---------SHHHHHHHHHHSEEEEEEEEEE-----------TTSCEESSEEE
T ss_pred ccCCCCeEEEecCcCHHHHHHhcCCCC---------CHHHHHHHHHcCCeEEeeEEEE-----------CCceEEEEEEe
Confidence 223578999999999999999999863 3677788888888899998776 234 9999999
Q ss_pred cchhHHHhhHHhhhhhcCchhhhhhcchhHHHHHHHHHHHHhhhccCCCeEEEEEECCEEEE
Q 007781 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIE 579 (590)
Q Consensus 518 iG~DA~Va~~~~~~Re~~p~kf~sr~~gkl~Y~~~g~~~l~~~~~~~~~~~v~l~vDG~~i~ 579 (590)
+||||+|+.++++. .++.+|+++|++.+++.++ ..++++++|++||+.++
T Consensus 166 ~G~da~v~~~~~~~--------~k~~~G~~~Y~~~~l~~l~----~~~~~~~~i~~dg~~~~ 215 (332)
T 2bon_A 166 GGFGTRITTETPEK--------LKAALGSVSYIIHGLMRMD----TLQPDRCEIRGENFHWQ 215 (332)
T ss_dssp EEEEEEC------------------CCHHHHHHHHHTSCEE----EEECEEEEEEETTEEEE
T ss_pred ECccHHHHHHhhHH--------hHhcccHHHHHHHHHHHHh----hCCCeeEEEEECCEEEE
Confidence 99999998766431 1356799999999876654 35688999999999875
No 4
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.79 E-value=2.1e-20 Score=213.24 Aligned_cols=135 Identities=19% Similarity=0.329 Sum_probs=51.3
Q ss_pred hccCCCcc-CCCCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCc
Q 007781 65 SKKNPKTR-HKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (590)
Q Consensus 65 ~k~~~~~~-~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck 141 (590)
+|+.+.++ ..+...+|.|.+++|. +|+||.+|.++||| +||| +|..|++.||++|+.++...|.
T Consensus 22 ~~~~~~~~~~~~~~~~H~f~~~~~~--~p~~C~~C~~~i~g~~~qg~-----------~C~~C~~~~H~~C~~~v~~~c~ 88 (674)
T 3pfq_A 22 ARKGALRQKNVHEVKNHKFTARFFK--QPTFCSHCTDFIWGFGKQGF-----------QCQVCSFVVHKRCHEFVTFSCP 88 (674)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccCcccccCCcccCCceEEeeeCC--CCCccccccccccccCCcee-----------ECCCCCCCcChhhcCcCcccCC
Confidence 34444333 3556789999999886 99999999999996 7776 9999999999999999999998
Q ss_pred cceec---CccceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCCCCCCC--C
Q 007781 142 CVSMI---GFEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDIC--D 216 (590)
Q Consensus 142 ~~~~~---~~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~C--d 216 (590)
+.... ....++|+|+.. ++..+++|++|++.+++.. .+|++|.||+++||.+|..+++.. | |
T Consensus 89 ~~~~~~~~~~~~~~h~~~~~------~~~~~~~C~~C~~~l~g~~---~qg~~C~~C~~~~H~~C~~~v~~~----C~~d 155 (674)
T 3pfq_A 89 GADKGPASDDPRSKHKFKIH------TYSSPTFCDHCGSLLYGLI---HQGMKCDTCMMNVHKRCVMNVPSL----CGTD 155 (674)
T ss_dssp -------------CCCCCEE------CCSSCCCCSSSCSCCBBSS---SCEECCSSSCCCBCSSTTSSSCCC----SSSC
T ss_pred CcccccccccccCCcceeec------CCCCCCCCCccccccchhh---cCccccccCCcchhhhhhhccCcc----cccc
Confidence 76432 123589999884 8999999999999997754 368999999999999999999876 8 5
Q ss_pred CcCCCceee
Q 007781 217 LGPFRRLIL 225 (590)
Q Consensus 217 lG~~r~~Il 225 (590)
-...+..|.
T Consensus 156 ~~~~~g~i~ 164 (674)
T 3pfq_A 156 HTERRGRIY 164 (674)
T ss_dssp SSCCSCEEE
T ss_pred ccccccccc
Confidence 555565554
No 5
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=99.67 E-value=4e-17 Score=137.08 Aligned_cols=71 Identities=21% Similarity=0.629 Sum_probs=61.7
Q ss_pred CcCccceecCc----------cceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccC
Q 007781 138 KDCKCVSMIGF----------EHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (590)
Q Consensus 138 ~~Ck~~~~~~~----------~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~ 207 (590)
.+||+++.+.. .+++|||++ ||++++++|.+|+|+|++.+ +++++||.||+++||++|+.++
T Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~H~Wve------GNl~~~s~C~vC~k~c~s~~--~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 3 SGSSGTTLASIGKDIIEDADGIAMPHQWLE------GNLPVSAKCTVCDKTCGSVL--RLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp CCCCCCCCCCCCCCCCCCSSCCCBCCCEEE------SCCCTTCBCSSSCCBCCCTT--TCCCEEESSSCCEECHHHHHHC
T ss_pred CCccceecccccccccccCCCccceeeEEc------cCCCCCCEeCCCCCEeCCcc--CCCCCCCcccChhHHHHHHHhc
Confidence 57998865421 368999999 59999999999999999866 4589999999999999999999
Q ss_pred CCCCCCCCCCcCC
Q 007781 208 SNETGDICDLGPF 220 (590)
Q Consensus 208 ~~~~~~~CdlG~~ 220 (590)
+.+ ||||++
T Consensus 75 ~~e----C~lG~~ 83 (84)
T 1r79_A 75 LTK----CSGPSS 83 (84)
T ss_dssp CSC----BCCSCC
T ss_pred cCc----CCCCCC
Confidence 887 999987
No 6
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.12 E-value=1.1e-11 Score=102.76 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=53.3
Q ss_pred CCccCCCCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCcc
Q 007781 69 PKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (590)
Q Consensus 69 ~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~ 142 (590)
.+.+..+...+|.|...+|. +|+||.+|.++||| +||| +|+.|++.+|++|+.++..+|..
T Consensus 13 ~r~~~~~~~~~H~F~~~~f~--~pt~C~~C~~~lwGl~kqG~-----------~C~~C~~~~Hk~C~~~v~~~C~~ 75 (77)
T 2enn_A 13 IKQAKVHHVKCHEFTATFFP--QPTFCSVCHEFVWGLNKQGY-----------QCRQCNAAIHKKCIDKVIAKCTG 75 (77)
T ss_dssp CCCCCCEESSSCEEEEECCS--SCEECSSSCCEECCTTCCEE-----------ECSSSCCEEESGGGSSCCSCCCC
T ss_pred ccccccccCCCCccEEEcCC--CCcCccccChhhcccccccc-----------CcCCCCCcCCHhHHhhCcCCCCC
Confidence 34556667889999999886 99999999999995 6765 99999999999999999999965
No 7
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.4e-10 Score=95.99 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=52.4
Q ss_pred CCCCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCcccee
Q 007781 73 HKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSM 145 (590)
Q Consensus 73 ~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~ 145 (590)
..+...+|.|....|. +|+||.+|.++||| +||| +|..|++.+|++|..++...|.....
T Consensus 11 k~~~~~~H~F~~~~~~--~pt~C~~C~~~lwGl~kqg~-----------~C~~C~~~~Hk~C~~~v~~~C~~~~~ 72 (83)
T 2yuu_A 11 KIHYIKNHEFIATFFG--QPTFCSVCKDFVWGLNKQGY-----------KCRQCNAAIHKKCIDKIIGRCTGTAA 72 (83)
T ss_dssp CEECGGGCCEEEECCS--SCCCCSSSCCCCCSSSCCEE-----------EETTTCCEECTTGGGTCCSCCSSCCC
T ss_pred hCcccCCCceEeEeCC--CCcChhhcChhhcccccccc-----------ccCCcCCeeChhhhhhCCCcCCCccc
Confidence 3346789999999886 99999999999996 6765 99999999999999999999987653
No 8
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=98.92 E-value=6e-10 Score=89.16 Aligned_cols=52 Identities=23% Similarity=0.458 Sum_probs=47.1
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCc
Q 007781 77 LAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (590)
Q Consensus 77 ~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck 141 (590)
..+|.|....+. +|+||.+|.++||| +||| +|+.|++.+|++|+.++...|.
T Consensus 10 ~~~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~-----------~C~~C~~~~Hk~C~~~v~~~C~ 63 (65)
T 2enz_A 10 DMPHRFKVYNYK--SPTFCEHCGTLLWGLARQGL-----------KCDACGMNVHHRCQTKVANLCG 63 (65)
T ss_dssp CCCCCEEECCCC--SCCBCSSSCCBCCCSSSCSE-----------EESSSCCEECTTTTTTSCSCTT
T ss_pred CCCCccEeEcCC--CCcCchhcChhheecCCccc-----------ccCCCCCccCHhHHhhCcCcCC
Confidence 368999999886 89999999999996 6775 9999999999999999999885
No 9
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=98.91 E-value=4e-10 Score=85.98 Aligned_cols=50 Identities=26% Similarity=0.511 Sum_probs=46.0
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCcc
Q 007781 78 APHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (590)
Q Consensus 78 ~~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~ 142 (590)
.+|.|....+. +|+||.+|.++|| ||| +|+.|++.+|++|..++...|..
T Consensus 2 ~~H~F~~~~~~--~pt~C~~C~~~l~--qG~-----------~C~~C~~~~H~~C~~~v~~~C~~ 51 (52)
T 1faq_A 2 TTHNFARKTFL--KLAFCDICQKFLL--NGF-----------RCQTCGYKFHEHCSTKVPTMCVD 51 (52)
T ss_dssp CCCCCEEECCS--SCEECTTSSSEEC--SEE-----------ECTTTTCCBCSTTSSSSSSCCCC
T ss_pred CCceeEeEeCC--CCcCCCCcccccc--cCC-----------EeCCCCCeEChhHHhhCcCcCCC
Confidence 57999999886 8999999999998 886 99999999999999999999854
No 10
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=98.88 E-value=4.7e-10 Score=84.86 Aligned_cols=48 Identities=23% Similarity=0.440 Sum_probs=43.6
Q ss_pred CeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcC
Q 007781 80 HTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDC 140 (590)
Q Consensus 80 H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~C 140 (590)
|.|....+. +|++|.+|.++||| +||| +|+.|++.+|++|..++...|
T Consensus 1 H~F~~~~~~--~pt~C~~C~~~l~g~~~qg~-----------~C~~C~~~~H~~C~~~v~~~C 50 (50)
T 1ptq_A 1 HRFKVYNYM--SPTFCDHCGSLLWGLVKQGL-----------KCEDCGMNVHHKCREKVANLC 50 (50)
T ss_dssp CCEEEECCS--SCCBCTTTCCBCCSSSSCEE-----------EETTTCCEECHHHHTTSCSCC
T ss_pred CCCEeecCC--CCCCcCCCCceeeccCCccC-----------EeCCCCCeECHHHhhhcCCCC
Confidence 889998876 99999999999996 6775 999999999999999998877
No 11
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=98.87 E-value=6.5e-10 Score=89.27 Aligned_cols=53 Identities=25% Similarity=0.481 Sum_probs=45.7
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCcc
Q 007781 77 LAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (590)
Q Consensus 77 ~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~ 142 (590)
..+|.|....+. +|+||.+|.++||| +||| +|+.|++.+|++|+.++..+|..
T Consensus 11 ~~~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~-----------~C~~C~~~~Hk~C~~~v~~~C~~ 65 (66)
T 1y8f_A 11 GIQHNFEVWTAT--TPTYCYECEGLLWGIARQGM-----------RCTECGVKCHEKCQDLLNADCKL 65 (66)
T ss_dssp --CCCEEEEECS--SCCCCTTTCCCCCSSCCEEE-----------EETTTCCEECTTHHHHSCCCC--
T ss_pred CCCcccEeeeCC--CCcChhhcChhhcccCccee-----------EcCCCCCeeCHHHHhhCcCcCCC
Confidence 358999999886 99999999999996 6765 99999999999999999999964
No 12
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=7.1e-10 Score=91.09 Aligned_cols=56 Identities=25% Similarity=0.407 Sum_probs=49.3
Q ss_pred CCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccC-cCccc
Q 007781 75 VPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHK-DCKCV 143 (590)
Q Consensus 75 ~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~-~Ck~~ 143 (590)
....+|.|...+|. +|+||.+|.++||| +||| +|+.|++.+|++|+.++.. +|...
T Consensus 13 ~~~~~H~F~~~~f~--~pt~C~~C~~~lwGl~kqG~-----------~C~~C~~~~Hk~C~~~v~~~~C~~~ 71 (74)
T 2db6_A 13 VNDKPHKFKDHFFK--KPKFCDVCARMIVLNNKFGL-----------RCKNCKTNIHEHCQSYVEMQRCSGP 71 (74)
T ss_dssp SCSSBCCEEEEECS--SCEECSSSCCEECHHHHEEE-----------EESSSCCEECTTTTGGGSSSBCCCC
T ss_pred ccCCCCceEEeeCC--CCcCchhcChhhccccCCcc-----------ccCCCCCccChhHHhhCCCCcCCCC
Confidence 35678999999986 89999999999996 6775 9999999999999999986 69754
No 13
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=91.22 Aligned_cols=56 Identities=18% Similarity=0.415 Sum_probs=50.1
Q ss_pred CCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCccc
Q 007781 75 VPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (590)
Q Consensus 75 ~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~ 143 (590)
.+..+|.|...++. +|+||.+|.++||| +||| +|+.|++.+|++|+.++...|...
T Consensus 13 ~~~~~H~F~~~~~~--~pt~C~~C~~~l~Gl~kqG~-----------~C~~C~~~~Hk~C~~~v~~~C~~~ 70 (85)
T 2eli_A 13 DPRSKHKFKIHTYG--SPTFCDHCGSLLYGLIHQGM-----------KCDTCDMNVHKQCVINVPSLCGMD 70 (85)
T ss_dssp CTTTSCCCEEECCS--SCCBCSSSCCBCCCSSSCEE-----------ECSSSCCEEETTTTTTSCSCCCCC
T ss_pred CCCCCcccEeeeCC--CCcCCcccCccccccccCCC-----------cCCCcCCccCHhHHhhcCCcCCcc
Confidence 45678999999886 99999999999996 6765 999999999999999999999754
No 14
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=98.81 E-value=5.2e-10 Score=89.52 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=48.0
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCccc
Q 007781 77 LAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (590)
Q Consensus 77 ~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~ 143 (590)
..+|.|.+..+. +|+||.+|.++||| +||| +|+.|++.+|++|..++...|...
T Consensus 7 ~~~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~-----------~C~~C~~~~Hk~C~~~v~~~C~~~ 62 (65)
T 3uej_A 7 VGSHRFKVYNYM--SPTFCDHCGSLLWGLVKQGL-----------KCEDCGMNVHHKCREKVANLCEFI 62 (65)
T ss_dssp EEECCEEEECCS--SCCBCTTTCCBCCSSSSCEE-----------EETTTCCEECHHHHTTSCSEEEEE
T ss_pred eCCceEEeEeCC--CCCcccccChhhhccCceee-----------ECCCCCCeEchhHhhhCCCcCCCc
Confidence 458999999886 99999999999996 6665 999999999999999999999643
No 15
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=98.76 E-value=3.6e-09 Score=86.39 Aligned_cols=52 Identities=25% Similarity=0.437 Sum_probs=46.9
Q ss_pred CCCCCeeEe-eeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCc
Q 007781 76 PLAPHTWVL-ESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (590)
Q Consensus 76 ~~~~H~w~~-~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck 141 (590)
+..+|.|.. .++. +|+||.+|.++| .+||| +|..|++++|++|..++...|+
T Consensus 20 ~~~~H~F~~~~~~~--~pt~C~~C~~~l-~~qG~-----------kC~~C~~~cHkkC~~~V~~~C~ 72 (72)
T 2fnf_X 20 RGEGHRFVELALRG--GPGWCDLCGREV-LRQAL-----------RCANCKFTCHSECRSLIQLDCR 72 (72)
T ss_dssp GCSSCCCEECCCCS--SCCBCTTTSSBC-SSCCE-----------ECTTSSCEECTGGGGGCCSCCC
T ss_pred cCCCCccceeecCC--CCcchhhhhHHH-HhCcC-----------ccCCCCCeechhhhccCcCCCC
Confidence 457899999 7775 999999999999 78886 9999999999999999999884
No 16
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=98.71 E-value=2.6e-09 Score=83.89 Aligned_cols=51 Identities=25% Similarity=0.451 Sum_probs=46.3
Q ss_pred CCCCeeEe-eeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCc
Q 007781 77 LAPHTWVL-ESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (590)
Q Consensus 77 ~~~H~w~~-~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck 141 (590)
..+|.|.. .++. +|+||.+|.++| .+||| +|+.|++++|++|..++...|.
T Consensus 8 ~~~H~F~~~~~~~--~pt~C~~C~~~i-~kqg~-----------kC~~C~~~cH~kC~~~v~~~C~ 59 (59)
T 1rfh_A 8 GEGHRFVELALRG--GPGWCDLCGREV-LRQAL-----------RCANCKFTCHSECRSLIQLDCR 59 (59)
T ss_dssp CSSCCCEECCCSS--CCEECTTTCSEE-CSCCE-----------ECTTTSCEECHHHHTTCCCCCC
T ss_pred CCCCcCeeeeccC--CCeEchhcchhh-hhCcc-----------EeCCCCCeEehhhhhhCcCCCC
Confidence 46899999 8776 999999999999 68886 9999999999999999999884
No 17
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=98.69 E-value=2.2e-09 Score=89.94 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=48.0
Q ss_pred CCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccc---cccCcCcc
Q 007781 75 VPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSL---SAHKDCKC 142 (590)
Q Consensus 75 ~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~---~~~~~Ck~ 142 (590)
+...+|.|..+++. +||||.+|.++||| +| .++++|..|++.+|++|+. .+...|..
T Consensus 20 ~~~~~H~F~~~~~~--~PT~Cd~C~~~lWGl~kq---------p~G~~C~~C~~~~HkrC~~k~~~v~~~C~~ 81 (84)
T 2row_A 20 ICHKGHEFIPTLYH--FPTNCEACMKPLWHMFKP---------PPALECRRCHIKCHKDHMDKKEEIIAPCKV 81 (84)
T ss_dssp EEETTEEEEEECCS--SCEECSSSSSEECCSSSC---------CCEEEESSSCCEEEHHHHHHTCTTCCCCST
T ss_pred EEcCCcceEeEcCC--CCcchhhcCHhhhccccC---------CCCCEecCCCCccchhHhCCccccccccCc
Confidence 44679999999886 99999999999996 44 1145999999999999999 68888864
No 18
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=98.62 E-value=3.2e-08 Score=101.29 Aligned_cols=108 Identities=13% Similarity=0.022 Sum_probs=63.5
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCch--------HHHHHHHhCCCCeEEEEcCcchHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPE--------VGLFLFRKVPHFRVLVCGGDGTVGWVLN 433 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~--------~a~~l~~~~~~~~Vvv~GGDGTV~~Vln 433 (590)
+++++||+||.++. ..+.++.+...|...++ +.+..+.... .+.+. ...+.+.||++|||||++++++
T Consensus 5 mkki~ii~np~~~~--~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~GGDGT~l~a~~ 81 (292)
T 2an1_A 5 FKCIGIVGHPRHPT--ALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAE-IGQQADLAVVVGGDGNMLGAAR 81 (292)
T ss_dssp CCEEEEECC---------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHH-HHHHCSEEEECSCHHHHHHHHH
T ss_pred CcEEEEEEcCCCHH--HHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhh-cccCCCEEEEEcCcHHHHHHHH
Confidence 57899999998754 33556666666654332 2222221000 00010 0113578999999999999999
Q ss_pred HHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccc
Q 007781 434 AIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAV 488 (590)
Q Consensus 434 ~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~ 488 (590)
++...+ .|.||| |+||.|+||+. + + .++.++++.+.++..
T Consensus 82 ~~~~~~---~P~lGI-~~Gt~gfla~~-~-~---------~~~~~al~~i~~g~~ 121 (292)
T 2an1_A 82 TLARYD---INVIGI-NRGNLGFLTDL-D-P---------DNALQQLSDVLEGRY 121 (292)
T ss_dssp HHTTSS---CEEEEB-CSSSCCSSCCB-C-T---------TSHHHHHHHHHTTCE
T ss_pred HhhcCC---CCEEEE-ECCCcccCCcC-C-H---------HHHHHHHHHHHcCCC
Confidence 997532 345777 89998888863 3 2 247777888876644
No 19
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=98.51 E-value=6.9e-08 Score=97.43 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=70.6
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCC
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPP 444 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~ 444 (590)
++++|+||.||++ +.++.+.+...|. . +++.. . + + ......+.||++|||||+.++++.+.. + .|
T Consensus 2 ki~ii~Np~~~~~-~~~~~~~i~~~l~--~-~~~~~-~---~--~-~~~~~~D~vv~~GGDGTll~~a~~~~~-~---~P 66 (258)
T 1yt5_A 2 KIAILYREEREKE-GEFLKEKISKEHE--V-IEFGE-A---N--A-PGRVTADLIVVVGGDGTVLKAAKKAAD-G---TP 66 (258)
T ss_dssp EEEEEECGGGHHH-HHHHHHHHTTTSE--E-EEEEE-S---S--S-CSCBCCSEEEEEECHHHHHHHHTTBCT-T---CE
T ss_pred EEEEEEeCCCchH-HHHHHHHHHHHhc--C-Cceec-c---c--c-cccCCCCEEEEEeCcHHHHHHHHHhCC-C---CC
Confidence 5899999999986 7777777777766 2 33331 1 1 0 001135789999999999999999864 2 34
Q ss_pred CEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEE
Q 007781 445 PVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKV 496 (590)
Q Consensus 445 plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v 496 (590)
.+|| ++||.+.|+ .+. + .++.++++.+.++....-++..+
T Consensus 67 ilGI-n~G~~Gfl~-~~~-~---------~~~~~al~~i~~g~~~i~~r~~l 106 (258)
T 1yt5_A 67 MVGF-KAGRLGFLT-SYT-L---------DEIDRFLEDLRNWNFREETRWFI 106 (258)
T ss_dssp EEEE-ESSSCCSSC-CBC-G---------GGHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEE-ECCCCCccC-cCC-H---------HHHHHHHHHHHcCCceEEEEEEE
Confidence 4777 599996666 454 2 35778888887775543344333
No 20
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=98.50 E-value=2.4e-07 Score=95.75 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=70.3
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchH---------------HHHHH-Hh--C--CCCeEEE
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEV---------------GLFLF-RK--V--PHFRVLV 421 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~---------------a~~l~-~~--~--~~~~Vvv 421 (590)
+++++||+||.++.. .+.++.+...|...++ +.+..+..... ..+.+ +. . +.+.||+
T Consensus 4 m~ki~iI~n~~~~~~--~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~ 81 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEA--TETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLV 81 (307)
T ss_dssp -CEEEEEESSSGGGG--SHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEE
T ss_pred CCEEEEEEeCCCHHH--HHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEE
Confidence 578999999998643 3566777777765432 22332222110 01111 11 1 3478999
Q ss_pred EcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEE
Q 007781 422 CGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWK 495 (590)
Q Consensus 422 ~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~ 495 (590)
+|||||+.++++.+...+ .|.+|| ++||.|.|+. +. + .++.++++.+.++....-++..
T Consensus 82 ~GGDGT~l~a~~~~~~~~---~pvlgi-~~G~~gfl~~-~~-~---------~~~~~~~~~i~~g~~~~~~r~~ 140 (307)
T 1u0t_A 82 LGGDGTFLRAAELARNAS---IPVLGV-NLGRIGFLAE-AE-A---------EAIDAVLEHVVAQDYRVEDRLT 140 (307)
T ss_dssp EECHHHHHHHHHHHHHHT---CCEEEE-ECSSCCSSCS-EE-G---------GGHHHHHHHHHHTCCEEEEECC
T ss_pred EeCCHHHHHHHHHhccCC---CCEEEE-eCCCCccCcc-cC-H---------HHHHHHHHHHHcCCcEEEEEEE
Confidence 999999999999997632 244775 7999999985 43 1 3577788888777554444433
No 21
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.49 E-value=4.8e-08 Score=109.58 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=60.4
Q ss_pred hhhhHHHHHHHHhhccCCCccCCCCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccC
Q 007781 52 RNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAH 129 (590)
Q Consensus 52 r~~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH 129 (590)
..+...||.+|.++..+...+. ...++|.|....+. +|++|.+|.+++|| +|| ++|..|++.||
T Consensus 492 ~eeK~~Wi~~I~~ai~~~~~~~-~~~~~H~F~~~~~~--~~t~C~~C~~~l~gl~~qg-----------~~C~~C~~~vH 557 (587)
T 3ky9_A 492 RELKKKWMEQFEMAISNIYPEN-ATANGHDFQMFSFE--ETTSCKACQMLLRGTFYQG-----------YRCHRCRASAH 557 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-TTGGGCCEEEECCS--SCCBCTTTCSBCCSSSCCE-----------EEETTTCCEEC
T ss_pred HHHHHHHHHHHHHHhhhhcccc-ccccCCceeEEeCC--CCcccccccccccccccCC-----------cCCCCCCCccc
Confidence 3456789999988775554332 34578999999886 99999999999996 555 59999999999
Q ss_pred CCccccccCcCcccee
Q 007781 130 LSCSLSAHKDCKCVSM 145 (590)
Q Consensus 130 ~~C~~~~~~~Ck~~~~ 145 (590)
++|+..+ ..|+....
T Consensus 558 k~C~~~v-~~C~~~~~ 572 (587)
T 3ky9_A 558 KECLGRV-PPCGRHGQ 572 (587)
T ss_dssp SGGGGGS-CCC-----
T ss_pred hhhhhcC-CCCCCCCc
Confidence 9999999 58987654
No 22
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=98.48 E-value=4.7e-08 Score=77.17 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=46.5
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCC-CCCCCCCcccCCcccccccccccccCCCccccccCcCcc
Q 007781 78 APHTWVLESVSRGKNLNCCVCLKSMS-PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (590)
Q Consensus 78 ~~H~w~~~~~~~~~P~~C~vC~~~l~-g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~ 142 (590)
..|.|.++.+. +|++|.+|.+.|+ |+||| +|..|++.+|++|...+...|..
T Consensus 7 ~~H~F~~kt~~--~~~~C~~Cg~~i~~gkq~~-----------kC~dC~~~cH~~C~~~~~~~C~p 59 (61)
T 4b6d_A 7 RLHDFVSKTVI--KPESCVPCGKRIKFGKLSL-----------KCRDCRVVSHPECRDRCPLPCIP 59 (61)
T ss_dssp CCCCEEEEECC--SCEECTTTCCEECTTCEEE-----------EESSSSCEECGGGGGGSCSSCCC
T ss_pred cceeEEeeecc--CCcccccccCEEEEeeEee-----------ECCCCCCeEchhHhhcCCCCCCC
Confidence 47999999886 8999999999884 67775 99999999999999999999965
No 23
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=98.42 E-value=5.5e-07 Score=91.51 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=70.6
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCC
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSP 443 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~ 443 (590)
+++.+|+||+ ..+.++.+.+...|...++ ++. ....+.||++|||||+..+++.+.... ..
T Consensus 1 mki~ii~n~~---~~~~~~~~~l~~~l~~~g~-~v~-------------~~~~D~vv~lGGDGT~l~aa~~~~~~~--~~ 61 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLRLNMIAGFGEYDM-EYD-------------DVEPEIVISIGGDGTFLSAFHQYEERL--DE 61 (272)
T ss_dssp CEEEEEECCS---HHHHHHHHHHHHHHTTSSC-EEC-------------SSSCSEEEEEESHHHHHHHHHHTGGGT--TT
T ss_pred CEEEEEECCC---HHHHHHHHHHHHHHHHCCC-EeC-------------CCCCCEEEEEcCcHHHHHHHHHHhhcC--CC
Confidence 3588999963 2345677888888877654 221 123578999999999999999986531 13
Q ss_pred CC-EEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEEEE
Q 007781 444 PP-VAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVA 497 (590)
Q Consensus 444 ~p-lgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~v~ 497 (590)
+| +|| |+|| |.|+..+. + .++.++++.+.++....-++..++
T Consensus 62 ~PilGI-n~G~-lgfl~~~~-~---------~~~~~~l~~l~~g~~~i~~r~~L~ 104 (272)
T 2i2c_A 62 IAFIGI-HTGH-LGFYADWR-P---------AEADKLVKLLAKGEYQKVSYPLLK 104 (272)
T ss_dssp CEEEEE-ESSS-CCSSCCBC-G---------GGHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCEEEE-eCCC-CCcCCcCC-H---------HHHHHHHHHHHcCCCEEEEEEEEE
Confidence 56 776 9999 55777764 2 357788888887755444444443
No 24
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=98.27 E-value=6.4e-07 Score=71.45 Aligned_cols=55 Identities=24% Similarity=0.453 Sum_probs=46.8
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCCCCCCCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICDL 217 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cdl 217 (590)
+..|.|... ++..+++|++|++.+++.+ .+|++|..|++++|.+|..+++.. |.+
T Consensus 10 ~~~H~F~~~------~~~~pt~C~~C~~~l~Gl~---~qg~~C~~C~~~~Hk~C~~~v~~~----C~~ 64 (65)
T 2enz_A 10 DMPHRFKVY------NYKSPTFCEHCGTLLWGLA---RQGLKCDACGMNVHHRCQTKVANL----CGI 64 (65)
T ss_dssp CCCCCEEEC------CCCSCCBCSSSCCBCCCSS---SCSEEESSSCCEECTTTTTTSCSC----TTT
T ss_pred CCCCccEeE------cCCCCcCchhcChhheecC---CcccccCCCCCccCHhHHhhCcCc----CCC
Confidence 478999884 7889999999999887754 367999999999999999998865 754
No 25
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=98.27 E-value=3.3e-07 Score=97.91 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=58.7
Q ss_pred hhhhHHHHHHHHhhccCCCccCCCCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccC
Q 007781 52 RNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAH 129 (590)
Q Consensus 52 r~~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH 129 (590)
..+...||.+|.++......+. ....+|.|....+. +|++|.+|.+.+|| +|| ++|..|+++||
T Consensus 320 ~~ek~~W~~~i~~ai~~~~~~~-~~~~~h~f~~~~~~--~~t~C~~C~~~~~g~~~qg-----------~~C~~C~~~~h 385 (406)
T 2vrw_B 320 RELKKKWMEQFEMAISNIYPEN-ATANGHDFQMFSFE--ETTSCKACQMLLRGTFYQG-----------YRCYRCRAPAH 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-TTGGGCCEEEECCS--SCCBCTTTCCBCCSSSSCE-----------EEETTTCCEEC
T ss_pred HHHHHHHHHHHHHHHhhhhhcc-ccCCCCCCccccCC--CCCCCccccchhceeCCCC-----------CCCCCCcCccc
Confidence 3446789999877665443222 24568999998775 99999999999986 565 59999999999
Q ss_pred CCccccccCcCccc
Q 007781 130 LSCSLSAHKDCKCV 143 (590)
Q Consensus 130 ~~C~~~~~~~Ck~~ 143 (590)
++|+.++.. |...
T Consensus 386 ~~C~~~~~~-C~~~ 398 (406)
T 2vrw_B 386 KECLGRVPP-CGRH 398 (406)
T ss_dssp GGGGGGSCC-C---
T ss_pred hhhhhhCCC-CCCC
Confidence 999999995 8654
No 26
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=98.25 E-value=8e-07 Score=66.90 Aligned_cols=49 Identities=24% Similarity=0.428 Sum_probs=41.2
Q ss_pred eeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 153 HQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 153 H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
|.|... ++..+++|++|++.+++.+ .+|++|..|++++|.+|..+++..
T Consensus 1 H~F~~~------~~~~pt~C~~C~~~l~g~~---~qg~~C~~C~~~~H~~C~~~v~~~ 49 (50)
T 1ptq_A 1 HRFKVY------NYMSPTFCDHCGSLLWGLV---KQGLKCEDCGMNVHHKCREKVANL 49 (50)
T ss_dssp CCEEEE------CCSSCCBCTTTCCBCCSSS---SCEEEETTTCCEECHHHHTTSCSC
T ss_pred CCCEee------cCCCCCCcCCCCceeeccC---CccCEeCCCCCeECHHHhhhcCCC
Confidence 667664 7788999999999887644 378999999999999999998754
No 27
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=98.10 E-value=1.3e-06 Score=69.87 Aligned_cols=52 Identities=19% Similarity=0.412 Sum_probs=43.3
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
...|.|... ++..+++|++|++.+++.+ .++++|..|++++|.+|..+++..
T Consensus 11 ~~~H~F~~~------~~~~pt~C~~C~~~l~Gl~---~qg~~C~~C~~~~Hk~C~~~v~~~ 62 (66)
T 1y8f_A 11 GIQHNFEVW------TATTPTYCYECEGLLWGIA---RQGMRCTECGVKCHEKCQDLLNAD 62 (66)
T ss_dssp --CCCEEEE------ECSSCCCCTTTCCCCCSSC---CEEEEETTTCCEECTTHHHHSCCC
T ss_pred CCCcccEee------eCCCCcChhhcChhhcccC---cceeEcCCCCCeeCHHHHhhCcCc
Confidence 468999884 6788999999999887644 368999999999999999998764
No 28
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=3.7e-06 Score=70.68 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=44.5
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
...|.|... ++..+++|++|++.+++.+ .|+++|..|++++|.+|..+++..
T Consensus 15 ~~~H~F~~~------~~~~pt~C~~C~~~l~Gl~---kqG~~C~~C~~~~Hk~C~~~v~~~ 66 (85)
T 2eli_A 15 RSKHKFKIH------TYGSPTFCDHCGSLLYGLI---HQGMKCDTCDMNVHKQCVINVPSL 66 (85)
T ss_dssp TTSCCCEEE------CCSSCCBCSSSCCBCCCSS---SCEEECSSSCCEEETTTTTTSCSC
T ss_pred CCCcccEee------eCCCCcCCcccCccccccc---cCCCcCCCcCCccCHhHHhhcCCc
Confidence 468999884 7889999999999887744 378999999999999999988754
No 29
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=98.04 E-value=2.7e-06 Score=70.20 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=44.3
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
...|.|... ++..+++|++|++.+++.+ .+|++|..|++++|.+|..+++..
T Consensus 21 ~~~H~F~~~------~f~~pt~C~~C~~~lwGl~---kqG~~C~~C~~~~Hk~C~~~v~~~ 72 (77)
T 2enn_A 21 VKCHEFTAT------FFPQPTFCSVCHEFVWGLN---KQGYQCRQCNAAIHKKCIDKVIAK 72 (77)
T ss_dssp SSSCEEEEE------CCSSCEECSSSCCEECCTT---CCEEECSSSCCEEESGGGSSCCSC
T ss_pred CCCCccEEE------cCCCCcCccccChhhcccc---ccccCcCCCCCcCCHhHHhhCcCC
Confidence 357999884 7889999999999888744 378999999999999999998754
No 30
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=5e-06 Score=69.50 Aligned_cols=52 Identities=19% Similarity=0.417 Sum_probs=43.9
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
...|.|... ++..+++|++|++.+++.+ .++++|..|++++|.+|..+++..
T Consensus 15 ~~~H~F~~~------~~~~pt~C~~C~~~lwGl~---kqg~~C~~C~~~~Hk~C~~~v~~~ 66 (83)
T 2yuu_A 15 IKNHEFIAT------FFGQPTFCSVCKDFVWGLN---KQGYKCRQCNAAIHKKCIDKIIGR 66 (83)
T ss_dssp GGGCCEEEE------CCSSCCCCSSSCCCCCSSS---CCEEEETTTCCEECTTGGGTCCSC
T ss_pred cCCCceEeE------eCCCCcChhhcChhhcccc---ccccccCCcCCeeChhhhhhCCCc
Confidence 357999885 7888999999999887744 368999999999999999987654
No 31
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=97.98 E-value=3.6e-06 Score=63.33 Aligned_cols=44 Identities=30% Similarity=0.524 Sum_probs=37.8
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccccc
Q 007781 78 APHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (590)
Q Consensus 78 ~~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~ 137 (590)
-+|.|...++ .+++|.+|.+.|| ||+ +|..|++.+|.+|...++
T Consensus 3 i~HrF~~~t~---~~t~C~~C~k~i~--~G~-----------kC~~Ck~~cH~kC~~~vp 46 (49)
T 1kbe_A 3 VTHRFSTKSW---LSQVCNVCQKSMI--FGV-----------KCKHCRLKCHNKCTKEAP 46 (49)
T ss_dssp CCCCEEEECC---SSCCCSSSCCSSC--CEE-----------EETTTTEEESSSCTTTSC
T ss_pred CCcccCccCC---CCcCccccCceeE--CcC-----------CCCCCCCccchhhcCcCC
Confidence 3699999876 3599999999998 665 999999999999999543
No 32
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=97.98 E-value=3.8e-06 Score=68.44 Aligned_cols=49 Identities=14% Similarity=0.389 Sum_probs=41.9
Q ss_pred ceEeeeee-eeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 150 HVIHQWSV-RWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 150 ~~~H~W~~-~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
...|.|.. . ++..+++|++|++.+ + .+|++|..|++++|.+|..+++..
T Consensus 21 ~~~H~F~~~~------~~~~pt~C~~C~~~l---~---~qG~kC~~C~~~cHkkC~~~V~~~ 70 (72)
T 2fnf_X 21 GEGHRFVELA------LRGGPGWCDLCGREV---L---RQALRCANCKFTCHSECRSLIQLD 70 (72)
T ss_dssp CSSCCCEECC------CCSSCCBCTTTSSBC---S---SCCEECTTSSCEECTGGGGGCCSC
T ss_pred CCCCccceee------cCCCCcchhhhhHHH---H---hCcCccCCCCCeechhhhccCcCC
Confidence 46799977 4 788899999998877 2 378999999999999999998865
No 33
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=97.95 E-value=4.4e-06 Score=66.49 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=43.8
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
...|.|... ++..+++|++|++.+++.+ .++++|..|++++|.+|..+++..
T Consensus 7 ~~~H~F~~~------~~~~pt~C~~C~~~l~Gl~---~qg~~C~~C~~~~Hk~C~~~v~~~ 58 (65)
T 3uej_A 7 VGSHRFKVY------NYMSPTFCDHCGSLLWGLV---KQGLKCEDCGMNVHHKCREKVANL 58 (65)
T ss_dssp EEECCEEEE------CCSSCCBCTTTCCBCCSSS---SCEEEETTTCCEECHHHHTTSCSE
T ss_pred eCCceEEeE------eCCCCCcccccChhhhccC---ceeeECCCCCCeEchhHhhhCCCc
Confidence 357999874 7888999999999887643 368999999999999999988754
No 34
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=97.94 E-value=3.7e-06 Score=63.75 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=39.5
Q ss_pred EeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 152 IHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 152 ~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
.|.|... ++..+++|++|++.++ +|++|..|++++|.+|..+++..
T Consensus 3 ~H~F~~~------~~~~pt~C~~C~~~l~-------qG~~C~~C~~~~H~~C~~~v~~~ 48 (52)
T 1faq_A 3 THNFARK------TFLKLAFCDICQKFLL-------NGFRCQTCGYKFHEHCSTKVPTM 48 (52)
T ss_dssp CCCCEEE------CCSSCEECTTSSSEEC-------SEEECTTTTCCBCSTTSSSSSSC
T ss_pred CceeEeE------eCCCCcCCCCcccccc-------cCCEeCCCCCeEChhHHhhCcCc
Confidence 5888774 7788999999988664 57999999999999999998764
No 35
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=97.91 E-value=4.7e-06 Score=69.81 Aligned_cols=57 Identities=30% Similarity=0.547 Sum_probs=47.9
Q ss_pred CCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCcc
Q 007781 76 PLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (590)
Q Consensus 76 ~~~~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~ 142 (590)
....|.|++.++. .+.+|.||.+.+....+| ++++|..|+++||..|..++...|..
T Consensus 24 ~~~~H~WveGNl~--~~s~C~vC~k~c~s~~~L--------~g~rC~WCq~~VH~~C~~~~~~eC~l 80 (84)
T 1r79_A 24 IAMPHQWLEGNLP--VSAKCTVCDKTCGSVLRL--------QDWRCLWCKAMVHTSCKESLLTKCSG 80 (84)
T ss_dssp CCBCCCEEESCCC--TTCBCSSSCCBCCCTTTC--------CCEEESSSCCEECHHHHHHCCSCBCC
T ss_pred ccceeeEEccCCC--CCCEeCCCCCEeCCccCC--------CCCCCcccChhHHHHHHHhccCcCCC
Confidence 3558999999875 678999999999865544 46799999999999999999888864
No 36
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=97.91 E-value=3.8e-06 Score=65.67 Aligned_cols=49 Identities=14% Similarity=0.389 Sum_probs=41.7
Q ss_pred ceEeeeee-eeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 150 HVIHQWSV-RWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 150 ~~~H~W~~-~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
...|.|.. . ++..+++|++|++.+ + .+|++|..|++++|.+|..+++..
T Consensus 8 ~~~H~F~~~~------~~~~pt~C~~C~~~i---~---kqg~kC~~C~~~cH~kC~~~v~~~ 57 (59)
T 1rfh_A 8 GEGHRFVELA------LRGGPGWCDLCGREV---L---RQALRCANCKFTCHSECRSLIQLD 57 (59)
T ss_dssp CSSCCCEECC------CSSCCEECTTTCSEE---C---SCCEECTTTSCEECHHHHTTCCCC
T ss_pred CCCCcCeeee------ccCCCeEchhcchhh---h---hCccEeCCCCCeEehhhhhhCcCC
Confidence 35789977 5 788899999998877 2 378999999999999999998865
No 37
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=97.89 E-value=8.1e-06 Score=68.31 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=44.6
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhc---cCCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN---NMSNE 210 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~---~~~~~ 210 (590)
...|.|+.. ++..+++|++|++.+++.+.+ .+|++|.-|++++|.+|+. .++..
T Consensus 22 ~~~H~F~~~------~~~~PT~Cd~C~~~lWGl~kq-p~G~~C~~C~~~~HkrC~~k~~~v~~~ 78 (84)
T 2row_A 22 HKGHEFIPT------LYHFPTNCEACMKPLWHMFKP-PPALECRRCHIKCHKDHMDKKEEIIAP 78 (84)
T ss_dssp ETTEEEEEE------CCSSCEECSSSSSEECCSSSC-CCEEEESSSCCEEEHHHHHHTCTTCCC
T ss_pred cCCcceEeE------cCCCCcchhhcCHhhhccccC-CCCCEecCCCCccchhHhCCccccccc
Confidence 467999885 899999999999999875432 1389999999999999999 67654
No 38
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=2.8e-06 Score=69.51 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=43.2
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 209 (590)
...|.|+.. ++..+++|++|++.+++.+ .+|++|..|++++|.+|..+++.
T Consensus 15 ~~~H~F~~~------~f~~pt~C~~C~~~lwGl~---kqG~~C~~C~~~~Hk~C~~~v~~ 65 (74)
T 2db6_A 15 DKPHKFKDH------FFKKPKFCDVCARMIVLNN---KFGLRCKNCKTNIHEHCQSYVEM 65 (74)
T ss_dssp SSBCCEEEE------ECSSCEECSSSCCEECHHH---HEEEEESSSCCEECTTTTGGGSS
T ss_pred CCCCceEEe------eCCCCcCchhcChhhcccc---CCccccCCCCCccChhHHhhCCC
Confidence 468999885 6788999999999887643 36899999999999999998863
No 39
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=97.77 E-value=1.5e-05 Score=59.98 Aligned_cols=46 Identities=20% Similarity=0.412 Sum_probs=38.1
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 209 (590)
+++|+|... ++. +++|++|++.++ +|++|..|+.++|.+|...+|+
T Consensus 2 ~i~HrF~~~------t~~-~t~C~~C~k~i~-------~G~kC~~Ck~~cH~kC~~~vp~ 47 (49)
T 1kbe_A 2 SVTHRFSTK------SWL-SQVCNVCQKSMI-------FGVKCKHCRLKCHNKCTKEAPA 47 (49)
T ss_dssp CCCCCEEEE------CCS-SCCCSSSCCSSC-------CEEEETTTTEEESSSCTTTSCC
T ss_pred CCCcccCcc------CCC-CcCccccCceeE-------CcCCCCCCCCccchhhcCcCCC
Confidence 478999874 555 499999999875 2589999999999999998764
No 40
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=97.73 E-value=8.4e-06 Score=88.87 Aligned_cols=53 Identities=26% Similarity=0.485 Sum_probs=47.6
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCcc
Q 007781 77 LAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (590)
Q Consensus 77 ~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~ 142 (590)
+..|.|....+. +|++|.+|.++||| +||+ +|..|++.+|++|...+...|..
T Consensus 207 v~~h~f~~~~~~--~pt~C~~C~~~l~g~~~qg~-----------~C~~C~~~~Hk~C~~~vp~~C~~ 261 (463)
T 3cxl_A 207 EKIHNFKVHTFR--GPHWCEYCANFMWGLIAQGV-----------KCADCGLNVHKQCSKMVPNDCKP 261 (463)
T ss_dssp CBCCCEEEECCS--SCCBCTTTCCBCCSSSCCEE-----------EETTTCCEECHHHHTTSCSBCCG
T ss_pred CCCcceEEeecC--CCCcchhhhhhhhhHHhcCe-----------eccccCccccccccccccccccc
Confidence 668999999886 89999999999997 5665 99999999999999999988965
No 41
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=97.65 E-value=2.1e-05 Score=61.95 Aligned_cols=50 Identities=18% Similarity=0.429 Sum_probs=41.7
Q ss_pred eEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 151 VIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 151 ~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
..|.|.+. ++..+++|++|++.++ | |.++++|..|+..+|.+|...++.+
T Consensus 7 ~~H~F~~k------t~~~~~~C~~Cg~~i~--~--gkq~~kC~dC~~~cH~~C~~~~~~~ 56 (61)
T 4b6d_A 7 RLHDFVSK------TVIKPESCVPCGKRIK--F--GKLSLKCRDCRVVSHPECRDRCPLP 56 (61)
T ss_dssp CCCCEEEE------ECCSCEECTTTCCEEC--T--TCEEEEESSSSCEECGGGGGGSCSS
T ss_pred cceeEEee------eccCCcccccccCEEE--E--eeEeeECCCCCCeEchhHhhcCCCC
Confidence 47889885 4567899999988773 3 4578999999999999999998865
No 42
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=97.40 E-value=5.4e-05 Score=86.10 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=45.0
Q ss_pred CCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCc
Q 007781 75 VPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (590)
Q Consensus 75 ~~~~~H~w~~~~~~~~~P~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck 141 (590)
.+...|.|....+. .|+||.+|.+.|+| +|| ++|..|++.||.+|...+...|-
T Consensus 98 ~~~~~h~~~~~~~~--~~~~C~~C~~~l~g~~~qg-----------~~C~~C~~~~H~~C~~~v~~~C~ 153 (674)
T 3pfq_A 98 DPRSKHKFKIHTYS--SPTFCDHCGSLLYGLIHQG-----------MKCDTCMMNVHKRCVMNVPSLCG 153 (674)
T ss_dssp ----CCCCCEECCS--SCCCCSSSCSCCBBSSSCE-----------ECCSSSCCCBCSSTTSSSCCCSS
T ss_pred cccCCcceeecCCC--CCCCCCccccccchhhcCc-----------cccccCCcchhhhhhhccCcccc
Confidence 34568999998876 89999999999985 455 59999999999999999999995
No 43
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00064 Score=72.35 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=46.1
Q ss_pred CCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEE
Q 007781 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWK 495 (590)
Q Consensus 416 ~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~ 495 (590)
.+.||++|||||+..++..+...+ .+|.||| ++||.+-|+. +.. +++.++++.+.++......+-.
T Consensus 115 ~DlVIvlGGDGTlL~aa~~~~~~~--vpPiLGI-N~G~lGFLt~-~~~----------~~~~~al~~il~g~~~~~~r~~ 180 (388)
T 3afo_A 115 TDLLVTLGGDGTILHGVSMFGNTQ--VPPVLAF-ALGTLGFLSP-FDF----------KEHKKVFQEVISSRAKCLHRTR 180 (388)
T ss_dssp CSEEEEEESHHHHHHHHHTTTTSC--CCCEEEE-ECSSCCSSCC-EEG----------GGHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEeCcHHHHHHHHHhcccC--CCeEEEE-ECCCcccCCc-CCh----------HHHHHHHHHHhcCCceEEEeeE
Confidence 478999999999999998876422 1234665 9999866653 431 3577788888877655544444
Q ss_pred EE
Q 007781 496 VA 497 (590)
Q Consensus 496 v~ 497 (590)
++
T Consensus 181 L~ 182 (388)
T 3afo_A 181 LE 182 (388)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 44
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=96.38 E-value=0.002 Score=68.44 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=42.0
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMS 208 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~ 208 (590)
...|.|... .+..+++|.+|++.+.+.+. +|++|.-|+++||.+|...++
T Consensus 344 ~~~h~f~~~------~~~~~t~C~~C~~~~~g~~~---qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 344 ANGHDFQMF------SFEETTSCKACQMLLRGTFY---QGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp GGGCCEEEE------CCSSCCBCTTTCCBCCSSSS---CEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCccc------cCCCCCCCccccchhceeCC---CCCCCCCCcCccchhhhhhCC
Confidence 356888663 67889999999999877553 679999999999999999986
No 45
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=96.01 E-value=0.0034 Score=68.22 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=42.3
Q ss_pred eEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC
Q 007781 151 VIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (590)
Q Consensus 151 ~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 210 (590)
..|.|... ++..+++|++|++.+++.+ .+|++|..|+.++|.+|...++..
T Consensus 208 ~~h~f~~~------~~~~pt~C~~C~~~l~g~~---~qg~~C~~C~~~~Hk~C~~~vp~~ 258 (463)
T 3cxl_A 208 KIHNFKVH------TFRGPHWCEYCANFMWGLI---AQGVKCADCGLNVHKQCSKMVPND 258 (463)
T ss_dssp BCCCEEEE------CCSSCCBCTTTCCBCCSSS---CCEEEETTTCCEECHHHHTTSCSB
T ss_pred CCcceEEe------ecCCCCcchhhhhhhhhHH---hcCeeccccCcccccccccccccc
Confidence 57888774 7888999999998876644 268999999999999999887754
No 46
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.95 E-value=0.0042 Score=69.44 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=42.1
Q ss_pred ceEeeeeeeeecccCCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccCC
Q 007781 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMS 208 (590)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~ 208 (590)
...|.|... .+..+++|.+|++.+++.+. +|++|.-|+++||.+|...++
T Consensus 516 ~~~H~F~~~------~~~~~t~C~~C~~~l~gl~~---qg~~C~~C~~~vHk~C~~~v~ 565 (587)
T 3ky9_A 516 ANGHDFQMF------SFEETTSCKACQMLLRGTFY---QGYRCHRCRASAHKECLGRVP 565 (587)
T ss_dssp GGGCCEEEE------CCSSCCBCTTTCSBCCSSSC---CEEEETTTCCEECSGGGGGSC
T ss_pred ccCCceeEE------eCCCCccccccccccccccc---CCcCCCCCCCccchhhhhcCC
Confidence 357888764 67889999999998877543 679999999999999999884
No 47
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=93.88 E-value=0.075 Score=53.89 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=44.2
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcEEEEeccCCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCC
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFV 441 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV~~l~~t~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~ 441 (590)
+++.||.|+..- .+++...|.. .+++ +.. ..... .. ..+.||+.|||||+-.++..+..
T Consensus 30 mki~iv~~~~~~-------~~~l~~~L~~~g~~v~-~~~-~~~~~----~~--~~DlvIvlGGDGT~L~aa~~~~~---- 90 (278)
T 1z0s_A 30 MRAAVVYKTDGH-------VKRIEEALKRLEVEVE-LFN-QPSEE----LE--NFDFIVSVGGDGTILRILQKLKR---- 90 (278)
T ss_dssp CEEEEEESSSTT-------HHHHHHHHHHTTCEEE-EES-SCCGG----GG--GSSEEEEEECHHHHHHHHTTCSS----
T ss_pred eEEEEEeCCcHH-------HHHHHHHHHHCCCEEE-Ecc-ccccc----cC--CCCEEEEECCCHHHHHHHHHhCC----
Confidence 458999997654 3334444433 3443 221 11111 11 34789999999999888766542
Q ss_pred CCCCEEEeccCCCCchh
Q 007781 442 SPPPVAILPAGTGNDLA 458 (590)
Q Consensus 442 ~~~plgILPlGTGNDfA 458 (590)
. +||-=|..||-+=|+
T Consensus 91 ~-~PilGIN~G~lGFLt 106 (278)
T 1z0s_A 91 C-PPIFGINTGRVGLLT 106 (278)
T ss_dssp C-CCEEEEECSSSCTTC
T ss_pred C-CcEEEECCCCCcccc
Confidence 3 666666778655554
No 48
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=89.93 E-value=0.49 Score=49.72 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=40.4
Q ss_pred CCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhccCCCCCCccccchHHHHHHHHHhccceEeeeEE
Q 007781 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWK 495 (590)
Q Consensus 416 ~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg~g~g~~~~~~~~~l~~il~~i~~a~~~~lD~~~ 495 (590)
.+.||+.|||||+-.++..+.. ..+||-=|-+| .||.= ...+ .+++.+.++++.++......|-.
T Consensus 109 ~DlvI~lGGDGT~L~aa~~~~~----~~~PvlGiN~G-------~LGFL---t~~~-~~~~~~~l~~vl~g~~~v~~R~~ 173 (365)
T 3pfn_A 109 IDFIICLGGDGTLLYASSLFQG----SVPPVMAFHLG-------SLGFL---TPFS-FENFQSQVTQVIEGNAAVVLRSR 173 (365)
T ss_dssp CSEEEEESSTTHHHHHHHHCSS----SCCCEEEEESS-------SCTTT---CCEE-STTHHHHHHHHHHSCCBEEEECC
T ss_pred CCEEEEEcChHHHHHHHHHhcc----CCCCEEEEcCC-------CCccc---eeec-HHHHHHHHHHHHcCCCeEEEEee
Confidence 3679999999999988877643 34564333444 34432 1112 24677888888877655444443
Q ss_pred E
Q 007781 496 V 496 (590)
Q Consensus 496 v 496 (590)
+
T Consensus 174 L 174 (365)
T 3pfn_A 174 L 174 (365)
T ss_dssp E
T ss_pred E
Confidence 3
No 49
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=87.87 E-value=0.41 Score=40.07 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=39.3
Q ss_pred CCCccCCCCCC-CCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccccc
Q 007781 68 NPKTRHKVPLA-PHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (590)
Q Consensus 68 ~~~~~~~~~~~-~H~w~~~~~~~~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~ 137 (590)
......++|.- .|...+... .+..|+.|.+... +..|+|..|++.+|..|+....
T Consensus 25 ~lP~~i~Hp~Hp~H~L~L~~~---~~~~C~~C~~~~~------------~~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 25 DWPKKVKHVLHEEHELELTRV---QVYTCDKCEEEGT------------IWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp SSCSEECCSTTTTSCEEEECC---SSCCCTTTSCCCC------------SCEEECTTTCCCCCHHHHHCSS
T ss_pred cCCceecCCCCCCCccEEeeC---CCeEeCCCCCcCC------------CcEEEcCCCCCeEcHHhcCCCC
Confidence 33444456665 487777542 4678999998753 2358999999999999997644
No 50
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=77.23 E-value=0.96 Score=37.78 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=26.4
Q ss_pred CCcccccCCCCCcCCCCCCCcceecccccccchhhhcc
Q 007781 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (590)
Q Consensus 169 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 206 (590)
+-.|+.|++...+. .++|.-|...+|..|...
T Consensus 47 ~~~C~~C~~~~~~~------~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIW------SYHCDECDFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSC------EEECTTTCCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCc------EEEcCCCCCeEcHHhcCC
Confidence 46899999986443 389999999999999854
No 51
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.91 E-value=1.3 Score=38.55 Aligned_cols=86 Identities=21% Similarity=0.437 Sum_probs=52.4
Q ss_pred ccccccCCCCCC--CCCCCCcccCCcccccccccccccCCCccccccCcCccceecCccceEeeeeeeeecccCCCCCCC
Q 007781 93 LNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEAS 170 (590)
Q Consensus 93 ~~C~vC~~~l~g--~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~ 170 (590)
.+|.+|..--.. +.| ..+.-..|+.|+...|..|+...... +... -.-.|.- +.-.
T Consensus 2 ~~C~~C~~~~~~n~k~g------~~~~Li~C~~C~~~~H~~Cl~~~~~~---~~~~----~~~~W~C---------~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSG------RPEELVSCADCGRSGHPTCLQFTLNM---TEAV----KTYKWQC---------IECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTC------CCCCCEECSSSCCEECTTTTTCCHHH---HHHH----HHTTCCC---------GGGC
T ss_pred CcCccCCCCccccccCC------CCCCCeEeCCCCCccchhhCCChhhh---hhcc----CCCccCc---------cccC
Confidence 378999764321 222 12355799999999999999753210 0000 0012533 1224
Q ss_pred cccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 171 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
.|.+|++.-.. ...+.|..|.+.+|..|..
T Consensus 60 ~C~~C~~~~~~-----~~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 60 SCILCGTSEND-----DQLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp CCTTTTCCTTT-----TTEEECSSSCCEEETTTSS
T ss_pred ccCcccccCCC-----CceEEcCCCCccccccccC
Confidence 67788765322 1357999999999999985
No 52
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=73.22 E-value=2.2 Score=31.25 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=26.5
Q ss_pred cccccCCCCCcCCCCCCCcceecccccccchhhh
Q 007781 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCH 204 (590)
Q Consensus 171 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~ 204 (590)
.|..|++.+...-+.-+++.+|..|+..|-.+-.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR 38 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVR 38 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEEec
Confidence 7999999987655555688999999988766543
No 53
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.67 E-value=5.7 Score=34.04 Aligned_cols=80 Identities=25% Similarity=0.475 Sum_probs=52.9
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccccCcCccceecCccceEeeeeeeeecccCCCCCCC
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEAS 170 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~ 170 (590)
.-.+|.+|.+.=- + ..-+.|+.|....|..|+...... . ..-.|.- +.-.
T Consensus 6 ~~~~C~~C~~~g~----~-------~~ll~C~~C~~~~H~~Cl~~~~~~---~-------~~~~W~C---------~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGD----L-------LDQFFCTTCGQHYHGMCLDIAVTP---L-------KRAGWQC---------PECK 55 (111)
T ss_dssp CCSCBTTTCCCCC----T-------TTSEECSSSCCEECTTTTTCCCCT---T-------TSTTCCC---------TTTC
T ss_pred CCCCCcCCCCCCC----C-------cCCeECCCCCCCcChHHhCCcccc---c-------cccCccC---------CcCC
Confidence 4468999987411 0 112599999999999999865421 1 0123533 2234
Q ss_pred cccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 171 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
+|.+|++.-.. ...+.|.-|.+.+|..|..
T Consensus 56 ~C~~C~~~~~~-----~~ll~Cd~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 56 VCQNCKQSGED-----SKMLVCDTCDKGYHTFCLQ 85 (111)
T ss_dssp CCTTTCCCSCC-----TTEEECSSSCCEEEGGGSS
T ss_pred cccccCccCCC-----CCeeECCCCCcHHhHHhcC
Confidence 78888775432 1358999999999999985
No 54
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.43 E-value=3.1 Score=35.95 Aligned_cols=87 Identities=23% Similarity=0.518 Sum_probs=51.6
Q ss_pred ccccccCCCCC-CCCCCCCcccCCcccccccccccccCCCccccccCcCccceecCccceEeeeeeeeecccCCCCCCCc
Q 007781 93 LNCCVCLKSMS-PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEASF 171 (590)
Q Consensus 93 ~~C~vC~~~l~-g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~ 171 (590)
.+|.+|...=. .+.| ....-+.|+.|+...|..|+......= .... .-.|.- +.-..
T Consensus 6 ~~C~~C~~~~~~~~~g------~~~~Ll~C~~C~~~~H~~Cl~~~~~~~--~~~~-----~~~W~C---------~~C~~ 63 (112)
T 3v43_A 6 PICSFCLGTKEQNREK------KPEELISCADCGNSGHPSCLKFSPELT--VRVK-----ALRWQC---------IECKT 63 (112)
T ss_dssp SSBTTTCCCTTCCTTS------CCCCCEECTTTCCEECHHHHTCCHHHH--HHHH-----TSCCCC---------TTTCC
T ss_pred ccccccCCchhhCcCC------CchhceEhhhcCCCCCCchhcCCHHHH--HHhh-----cccccc---------ccCCc
Confidence 48999986421 1112 123457999999999999987521100 0000 113533 22346
Q ss_pred ccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 172 CSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 172 C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
|.+|++.-.. ..+-+.|..|.+.+|..|..
T Consensus 64 C~vC~~~~~~----~~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 64 CSSCRDQGKN----ADNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp BTTTCCCCCT----TCCCEECTTTCCEECGGGCS
T ss_pred cccccCcCCC----ccceEEcCCCCCeeecccCC
Confidence 8888764111 01347899999999999974
No 55
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=61.30 E-value=3.9 Score=33.78 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=27.0
Q ss_pred CCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhccC
Q 007781 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (590)
Q Consensus 166 ~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~ 207 (590)
....-.|.+|+.--.+ .-+.|..|.+.+|..|...+
T Consensus 12 ~~~D~~C~VC~~~t~~------~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE------SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSS------CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccccccc------ceeccccccccccHhhcccc
Confidence 3456799999643322 23799999999999999765
No 56
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=58.21 E-value=19 Score=37.48 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEeccCC----chHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhc
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQG----PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ 438 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t~~----p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~ 438 (590)
.++++||..+.. ..+.+++...|....+|+-...+. .+.+.+.+++.+.+.||++|| |++..+.-.+.-.
T Consensus 37 ~~rvliVtd~~~-----~~~~~~v~~~L~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~iA~~ 110 (364)
T 3iv7_A 37 SAKVMVIAGERE-----MSIAHKVASEIEVAIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGG-GSTIGLAKAIAMT 110 (364)
T ss_dssp CSSEEEECCGGG-----HHHHHHHTTTSCCSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHHHHHH
T ss_pred CCEEEEEECCCH-----HHHHHHHHHHcCCCEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHhc
Confidence 367888876642 235677777777554554222111 123445566667788999999 8888887776542
Q ss_pred CCCCCCCEEEecc
Q 007781 439 NFVSPPPVAILPA 451 (590)
Q Consensus 439 ~~~~~~plgILPl 451 (590)
..+|+..||.
T Consensus 111 ---~~~P~i~IPT 120 (364)
T 3iv7_A 111 ---TALPIVAIPT 120 (364)
T ss_dssp ---HCCCEEEEEC
T ss_pred ---cCCCEEEEcC
Confidence 3578888986
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.98 E-value=2.5 Score=34.05 Aligned_cols=32 Identities=28% Similarity=0.661 Sum_probs=26.5
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
.-..|.+|++.+. +| .+|..|+...|..|+.+
T Consensus 14 ~i~~C~IC~~~i~--~g-----------~~C~~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 14 AVKICNICHSLLI--QG-----------QSCETCGIRMHLPCVAK 45 (74)
T ss_dssp SSCBCSSSCCBCS--SS-----------EECSSSCCEECHHHHHH
T ss_pred CCCcCcchhhHcc--cC-----------CccCCCCchhhHHHHHH
Confidence 4468999999886 34 39999999999999975
No 58
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=57.87 E-value=6.7 Score=30.73 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=25.7
Q ss_pred CCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 165 QPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 165 n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
+......|.+|++. + ..+.|--|.+.+|..|..
T Consensus 8 ~~~~~~~C~vC~~~--~------~ll~Cd~C~~~~H~~Cl~ 40 (66)
T 2lri_C 8 NLAPGARCGVCGDG--T------DVLRCTHCAAAFHWRCHF 40 (66)
T ss_dssp CCCTTCCCTTTSCC--T------TCEECSSSCCEECHHHHC
T ss_pred CCCCCCCcCCCCCC--C------eEEECCCCCCceecccCC
Confidence 44556789999862 2 247899999999999985
No 59
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=57.46 E-value=16 Score=37.84 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEecc-CCc-----hHHHHHHHhCCCCeEEEEcCcchHHHHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSST-QGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t-~~p-----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~ 436 (590)
.++++||..+.. ..+.+++...|....+..+... ..| +.+.+.+++.+.+.||++|| |++..+.-.+.
T Consensus 36 ~~r~liVtd~~~-----~~~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~aK~iA 109 (358)
T 3jzd_A 36 AKRALVLCTPNQ-----QAEAERIADLLGPLSAGVYAGAVMHVPIESARDATARAREAGADCAVAVGG-GSTTGLGKAIA 109 (358)
T ss_dssp CSCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHHHH
T ss_pred CCeEEEEeCCcH-----HHHHHHHHHHhccCCEEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC-cHHHHHHHHHH
Confidence 367888876642 2345666666765443222211 111 23344555556788999999 88888877765
Q ss_pred hcCCCCCCCEEEecc
Q 007781 437 KQNFVSPPPVAILPA 451 (590)
Q Consensus 437 ~~~~~~~~plgILPl 451 (590)
-. ..+|+..||.
T Consensus 110 ~~---~~~p~i~IPT 121 (358)
T 3jzd_A 110 LE---TGMPIVAIPT 121 (358)
T ss_dssp HH---HCCCEEEEEC
T ss_pred hc---cCCCEEEEeC
Confidence 42 3578888886
No 60
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=55.56 E-value=58 Score=33.61 Aligned_cols=91 Identities=22% Similarity=0.237 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhC--CCcE--EEEeccC-Cch---HHHHHHHhCCCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLN--PVQV--VELSSTQ-GPE---VGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~--~~qV--~~l~~t~-~p~---~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++||..+.+-...| +.+++...|. ..++ |+-.... ..+ .+.+.+++...+.||++|| |++..+.-.+
T Consensus 41 ~~~liVtd~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~AK~i 117 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNG--SLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG-GSPMDFAKAV 117 (371)
T ss_dssp SEEEEEEESSGGGTSS--HHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES-HHHHHHHHHH
T ss_pred CEEEEEECchHHhhcc--HHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHH
Confidence 6899999875543322 3344444443 2233 3322211 122 3334445556678888888 7777776665
Q ss_pred HhcCCC---------------CCCCEEEecc--CCCCch
Q 007781 436 DKQNFV---------------SPPPVAILPA--GTGNDL 457 (590)
Q Consensus 436 ~~~~~~---------------~~~plgILPl--GTGNDf 457 (590)
.-.-.. ..+|+..||. |||-..
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgse~ 156 (371)
T 1o2d_A 118 AVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEV 156 (371)
T ss_dssp HHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGG
T ss_pred HHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhhhh
Confidence 432111 4679999996 555443
No 61
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=55.30 E-value=26 Score=36.20 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE--EEEeccCCc----hHHHHHHHhCCCCeEEEEcCcchHHHHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV--VELSSTQGP----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV--~~l~~t~~p----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~ 436 (590)
.++++||..+.. ..+.+++...|....+ |+-.....+ +.+.+.+++.+.+.||++|| |++..+.-.+.
T Consensus 34 ~~r~liVtd~~~-----~~~~~~v~~~L~~~~~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~iA 107 (353)
T 3hl0_A 34 LSRALVLSTPQQ-----KGDAEALASRLGRLAAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG-GSTTGLGKAIA 107 (353)
T ss_dssp CCCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHH
T ss_pred CCEEEEEecCch-----hhHHHHHHHHHhhCCcEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHH
Confidence 367888877642 2355666666765443 321111111 23345566667788999999 88888877765
Q ss_pred hcCCCCCCCEEEecc
Q 007781 437 KQNFVSPPPVAILPA 451 (590)
Q Consensus 437 ~~~~~~~~plgILPl 451 (590)
-. ..+|+..||.
T Consensus 108 ~~---~~~p~i~IPT 119 (353)
T 3hl0_A 108 LR---TDAAQIVIPT 119 (353)
T ss_dssp HH---HCCEEEEEEC
T ss_pred hc---cCCCEEEEeC
Confidence 42 3578888886
No 62
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.05 E-value=7.3 Score=29.22 Aligned_cols=34 Identities=32% Similarity=0.863 Sum_probs=26.6
Q ss_pred CCCCCCCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 164 DQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 164 ~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
|.-....+|.+|++. + .-+.|..|.+.+|..|..
T Consensus 4 g~~~~~~~C~vC~~~--g------~ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 4 GSSGHEDFCSVCRKS--G------QLLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp CCCSSCCSCSSSCCS--S------CCEECSSSSCEECSSSSS
T ss_pred CcCCCCCCCccCCCC--C------eEEEcCCCCcceECccCC
Confidence 344556799999874 2 237899999999999985
No 63
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=54.75 E-value=7.9 Score=33.38 Aligned_cols=71 Identities=20% Similarity=0.423 Sum_probs=47.8
Q ss_pred CccccccCCCCCCCCCCCCcccCCccccccc--ccccccCCCccccccCcCccceecCccceEeeeeeeeecccCCCCCC
Q 007781 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCS--ICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEA 169 (590)
Q Consensus 92 P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~--vC~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~ 169 (590)
..||.+|.+. +..+.|+ .|....|..|+.....+ . -.|.-. .
T Consensus 15 ~~~C~~C~~~--------------G~ll~CD~~~Cp~~fH~~Cl~L~~~P------~------g~W~Cp----------~ 58 (107)
T 4gne_A 15 EDYCFQCGDG--------------GELVMCDKKDCPKAYHLLCLNLTQPP------Y------GKWECP----------W 58 (107)
T ss_dssp CSSCTTTCCC--------------SEEEECCSTTCCCEECTGGGTCSSCC------S------SCCCCG----------G
T ss_pred CCCCCcCCCC--------------CcEeEECCCCCCcccccccCcCCcCC------C------CCEECC----------C
Confidence 3699999841 1346999 89999999999732110 1 135331 2
Q ss_pred CcccccCCCCCcCCCCCCCcceecccccccchhhhccC
Q 007781 170 SFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (590)
Q Consensus 170 ~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~ 207 (590)
-.|..|++.- .++|.+|-..+|.+|..-.
T Consensus 59 c~C~~C~k~~---------~~~C~~Cp~sfC~~c~~g~ 87 (107)
T 4gne_A 59 HQCDECSSAA---------VSFCEFCPHSFCKDHEKGA 87 (107)
T ss_dssp GBCTTTCSBC---------CEECSSSSCEECTTTCTTS
T ss_pred CCCCcCCCCC---------CcCcCCCCcchhhhccCCc
Confidence 2577776532 3799999999999998643
No 64
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=54.24 E-value=49 Score=34.61 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=52.5
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCCCcEEEEecc-CCch-----HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHh
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSST-QGPE-----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV~~l~~t-~~p~-----~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
++++||..+.+-.. ..+.+++...|...+++.+... ..|. .+.+.+++.+.+.||++|| |++..+.-.+.-
T Consensus 51 ~r~liVtd~~~~~~--~g~~~~v~~~L~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~iA~ 127 (408)
T 1oj7_A 51 ARVLITYGGGSVKK--TGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGTKFIAA 127 (408)
T ss_dssp CEEEEEECSSHHHH--HSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHHHHHHH
T ss_pred CEEEEEECCchhhh--ccHHHHHHHHhCCCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHHHHH
Confidence 67888876543211 1156667777764444323211 1222 2344555556788999988 777777666543
Q ss_pred cC------------------CCCCCCEEEecc--CCCCchh
Q 007781 438 QN------------------FVSPPPVAILPA--GTGNDLA 458 (590)
Q Consensus 438 ~~------------------~~~~~plgILPl--GTGNDfA 458 (590)
.- ....+|+..||. |||-...
T Consensus 128 ~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtgSevt 168 (408)
T 1oj7_A 128 AANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESN 168 (408)
T ss_dssp HTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGGS
T ss_pred HHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchhHHhC
Confidence 20 014579999997 6654443
No 65
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=54.10 E-value=7.9 Score=40.68 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhC--------CCcEE--EEeccC-Cc-----hHHHHHHHhCC--C---CeEEE
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLN--------PVQVV--ELSSTQ-GP-----EVGLFLFRKVP--H---FRVLV 421 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~--------~~qV~--~l~~t~-~p-----~~a~~l~~~~~--~---~~Vvv 421 (590)
.++++||.++.... .+.+.+...|. ..+++ .+...+ .| +.+.+.+++.+ . +.||+
T Consensus 36 ~~k~liVtd~~v~~----~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIa 111 (393)
T 1sg6_A 36 STTYVLVTDTNIGS----IYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIA 111 (393)
T ss_dssp CSEEEEEEEHHHHH----HHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEE
T ss_pred CCeEEEEECCcHHH----HHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEE
Confidence 36889998864432 13444444443 23443 222111 12 23334455444 4 66888
Q ss_pred EcCcchHHHHHHHHHhcCCCCCCCEEEecc--CCCCchh
Q 007781 422 CGGDGTVGWVLNAIDKQNFVSPPPVAILPA--GTGNDLA 458 (590)
Q Consensus 422 ~GGDGTV~~Vln~L~~~~~~~~~plgILPl--GTGNDfA 458 (590)
+|| |++..+.-.+... +...+|+..||. ||+.|-+
T Consensus 112 lGG-Gsv~D~ak~~Aa~-~~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 112 LGG-GVIGDLTGFVAST-YMRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EES-HHHHHHHHHHHHH-GGGCCEEEEEECSHHHHHTTT
T ss_pred ECC-cHHHHHHHHHHHH-hcCCCCEEEECCchhhhhhcC
Confidence 887 8888877766521 124689999999 8988874
No 66
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=52.67 E-value=3.8 Score=40.31 Aligned_cols=33 Identities=27% Similarity=0.619 Sum_probs=27.7
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~ 136 (590)
.-..|.+|.+.+. +| .+|..|+...|..|..+.
T Consensus 179 ~i~~C~iC~~iv~--~g-----------~~C~~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 179 AVKICNICHSLLI--QG-----------QSCETCGIRMHLPCVAKY 211 (238)
T ss_dssp TCCBCTTTCSBCS--SC-----------EECSSSCCEECHHHHHHH
T ss_pred CCCcCcchhhHHh--CC-----------cccCccChHHHHHHHHHH
Confidence 4578999999886 44 499999999999999764
No 67
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=52.35 E-value=4.4 Score=33.45 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=25.3
Q ss_pred ccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccc
Q 007781 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (590)
Q Consensus 93 ~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~ 136 (590)
..|.||..+-. +- -+.|.+|+.+.|..|....
T Consensus 16 ~~C~VC~~~t~--~~----------l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 16 EMCDVCEVWTA--ES----------LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCTTTCCCCS--SC----------CSSCSSSSSCCCHHHHHHH
T ss_pred cccCccccccc--cc----------eeccccccccccHhhcccc
Confidence 48999985432 22 3699999999999999885
No 68
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=51.99 E-value=16 Score=38.37 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=46.1
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC-Cc-EEEEeccCCc-h---HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHh
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP-VQ-VVELSSTQGP-E---VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~-~q-V~~l~~t~~p-~---~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
++++||..+..-. .+.+++...|.. .+ +|+....+.+ + .+.+.+++.+.+.||++|| |++..+.-.+.-
T Consensus 53 ~r~liVtd~~~~~----~~~~~v~~~L~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~iA~ 127 (387)
T 3uhj_A 53 KRALVLIDRVLFD----ALSERIGKSCGDSLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKIVAI 127 (387)
T ss_dssp SEEEEEECTTTHH----HHHHHC------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHHHHH
T ss_pred CEEEEEECchHHH----HHHHHHHHHHHcCCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 6788888876542 255666666664 22 2333322211 1 3334455556788999999 888888777754
Q ss_pred cCCCCCCCEEEecc
Q 007781 438 QNFVSPPPVAILPA 451 (590)
Q Consensus 438 ~~~~~~~plgILPl 451 (590)
. ..+|+..||.
T Consensus 128 ~---~~~p~i~IPT 138 (387)
T 3uhj_A 128 D---TGARIVIAPT 138 (387)
T ss_dssp H---TTCEEEECCS
T ss_pred h---cCCCEEEecC
Confidence 2 4689999998
No 69
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=48.38 E-value=10 Score=29.16 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=26.3
Q ss_pred CCCCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 167 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
.....|.+|+..-...- ...+.|-.|.+.||..|..
T Consensus 4 ~~~~~C~vC~~~~~~~~---~~ll~Cd~C~~~~H~~C~~ 39 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAP---NEMVICDKCGQGYHQLCHT 39 (66)
T ss_dssp CCCCCBSSSCCCCCBTT---BCEEECSSSCCEEETTTSS
T ss_pred CCCCCCCCCCCCCCCCC---CCEEECCCCChHHHhhhCC
Confidence 44679999987532110 1357999999999999975
No 70
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=44.99 E-value=35 Score=34.89 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhh
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR 459 (590)
.+.+.+++.+-+.++++|||||+.-+ +.|.+ ...|+--||-===||+.-
T Consensus 85 ~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~----~~i~vvgiPkTIDNDl~~ 133 (320)
T 1pfk_A 85 VAIENLKKRGIDALVVIGGDGSYMGA-MRLTE----MGFPCIGLPGTIDNDIKG 133 (320)
T ss_dssp HHHHHHHHTTCCEEEEEECHHHHHHH-HHHHH----TTCCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHcCCCEEEEECCCchHHHH-HHHHh----hCCCEEEEeccccCCCCC
Confidence 44445555666789999999998765 55554 257888899888899973
No 71
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.72 E-value=12 Score=29.99 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=29.5
Q ss_pred CcccccCCCCCcCCCCCCCcceecccccccchhhhccCCCC-CCCCCCC
Q 007781 170 SFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE-TGDICDL 217 (590)
Q Consensus 170 ~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~-~~~~Cdl 217 (590)
..|.+|...+. ++.+|.-|+..+|..|..+-.+. ....|++
T Consensus 16 ~~C~IC~~~i~-------~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~ 57 (74)
T 2ct0_A 16 KICNICHSLLI-------QGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 57 (74)
T ss_dssp CBCSSSCCBCS-------SSEECSSSCCEECHHHHHHHSTTCSSCCCTT
T ss_pred CcCcchhhHcc-------cCCccCCCCchhhHHHHHHHHHhcCCCCCCC
Confidence 58999977653 46899999999999999754321 1145654
No 72
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.50 E-value=13 Score=28.43 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=27.0
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~ 137 (590)
.++||.+|....-. .+ .-.+|+.|..=.|..|+....
T Consensus 5 e~~~C~~C~~~~~~-~~---------~mI~Cd~C~~WfH~~Cvgl~~ 41 (64)
T 1we9_A 5 SSGQCGACGESYAA-DE---------FWICCDLCEMWFHGKCVKITP 41 (64)
T ss_dssp SCCCCSSSCCCCCS-SS---------CEEECSSSCCEEETTTTTCCT
T ss_pred CCCCCCCCCCccCC-CC---------CEEEccCCCCCCCccccCcCh
Confidence 56899999875421 11 125999999999999997643
No 73
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=43.47 E-value=70 Score=29.79 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEe---ccCCchHHHHHHHhCC--C--CeEEEEcCcchHHHHHHHHH
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELS---STQGPEVGLFLFRKVP--H--FRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~---~t~~p~~a~~l~~~~~--~--~~Vvv~GGDGTV~~Vln~L~ 436 (590)
.+.||.=..| --.+.+.....|....| |++. ....|+...++++++. . ..|.++||.|-|--|+.++-
T Consensus 14 ~V~IimGS~S----D~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~t 89 (173)
T 4grd_A 14 LVGVLMGSSS----DWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAKT 89 (173)
T ss_dssp SEEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHHC
T ss_pred eEEEEeCcHh----HHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhheecC
Confidence 3666653333 22344544444444333 4433 3355777778877652 2 23668999999999999985
Q ss_pred hcCCCCCCCEEEeccCC
Q 007781 437 KQNFVSPPPVAILPAGT 453 (590)
Q Consensus 437 ~~~~~~~~plgILPlGT 453 (590)
. .|.||+ |.-+
T Consensus 90 ~-----~PVIgV-Pv~~ 100 (173)
T 4grd_A 90 T-----VPVLGV-PVAS 100 (173)
T ss_dssp C-----SCEEEE-EECC
T ss_pred C-----CCEEEE-EcCC
Confidence 2 344554 6533
No 74
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.39 E-value=13 Score=27.13 Aligned_cols=31 Identities=19% Similarity=0.525 Sum_probs=23.6
Q ss_pred CcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 170 SFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 170 ~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
+.|.+|++.-... .-+.|.-|.+.+|..|..
T Consensus 1 a~C~vC~~~~~~~-----~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 1 ARCKVCRKKGEDD-----KLILCDECNKAFHLFCLR 31 (51)
T ss_dssp CCCTTTCCSSCCS-----CCEECTTTCCEECHHHHC
T ss_pred CCCCCCCCCCCCC-----CEEECCCCChhhCcccCC
Confidence 4699998753221 247899999999999984
No 75
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=42.31 E-value=36 Score=35.18 Aligned_cols=83 Identities=10% Similarity=0.086 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC-cE--EEEeccC---CchHHH---HHHHhCC---CCeEEEEcCcchHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV-QV--VELSSTQ---GPEVGL---FLFRKVP---HFRVLVCGGDGTVGW 430 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~-qV--~~l~~t~---~p~~a~---~l~~~~~---~~~Vvv~GGDGTV~~ 430 (590)
.++++||.++.... ...+.+...|... ++ +.+...+ ..+... +.+++.+ .+.||++|| |++..
T Consensus 34 ~~k~liVtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gsv~D 108 (368)
T 2gru_A 34 FDQYIMISDSGVPD----SIVHYAAEYFGKLAPVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GLTGN 108 (368)
T ss_dssp CSEEEEEEETTSCH----HHHHHHHHHHTTTSCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHHH----HHHHHHHHHHHhccceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hHHHH
Confidence 46899999987653 2456666666543 33 2222111 111222 3344444 456788887 88888
Q ss_pred HHHHHHhcCCCCCCCEEEecc
Q 007781 431 VLNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 431 Vln~L~~~~~~~~~plgILPl 451 (590)
+.-.+... +...+|+..||.
T Consensus 109 ~ak~~Aa~-~~rgip~i~IPT 128 (368)
T 2gru_A 109 VAGVAAGM-MFRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHH-BTTCCEEEEEEC
T ss_pred HHHHHHHH-hcCCCCEEEECC
Confidence 87776532 125689999998
No 76
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=41.37 E-value=36 Score=34.83 Aligned_cols=49 Identities=24% Similarity=0.269 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhh
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR 459 (590)
.+.+.+++.+-+.++++|||||+.-+ +.|.+. ..|+--||-===||+.-
T Consensus 84 ~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~----~i~vvgiPkTIDNDl~~ 132 (319)
T 1zxx_A 84 AGIEQLKKHGIDAVVVIGGDGSYHGA-LQLTRH----GFNSIGLPGTIDNDIPY 132 (319)
T ss_dssp HHHHHHHHTTCCEEEEEECHHHHHHH-HHHHHT----TCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHhCCCEEEEECCchHHHHH-HHHHHh----CCCEEEEeecccCCCCC
Confidence 44455555666789999999998765 555542 57888899888899973
No 77
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.37 E-value=13 Score=30.63 Aligned_cols=34 Identities=26% Similarity=0.562 Sum_probs=25.6
Q ss_pred ccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 93 ~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
.+|.+|...-.... +..+.|+.|...+|..|+.-
T Consensus 17 ~~C~vC~~~~~~~~---------~~ll~CD~C~~~yH~~Cl~P 50 (88)
T 1wev_A 17 LACVVCRQMTVASG---------NQLVECQECHNLYHQDCHKP 50 (88)
T ss_dssp CSCSSSCCCCCCTT---------CCEEECSSSCCEEETTTSSS
T ss_pred CcCCCCCCCCCCCC---------CceEECCCCCCeEcCccCCC
Confidence 58999997532111 23579999999999999874
No 78
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=40.23 E-value=86 Score=32.37 Aligned_cols=92 Identities=21% Similarity=0.310 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCCCCC---ChhHHHHHHHHhhCCCcEEEEec-cCCc-----hHHHHHHHhCCCCeEEEEcCcchHHHHHH
Q 007781 363 ARPLLVFINKKSGAQ---RGDSLRQRLNLLLNPVQVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLN 433 (590)
Q Consensus 363 ~~~llVivNPkSG~~---~g~~~~~~l~~lL~~~qV~~l~~-t~~p-----~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln 433 (590)
.++++||..+..... -.+++...|+. ...+++.+.. ...| +.+.+.+++.+.+.||++|| |++..+.-
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~--~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK 109 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLRE--AGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGK 109 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHH--TTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHH
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHH--cCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHH
Confidence 368899988766543 33444444433 1233322221 1122 23445566666788998988 77777766
Q ss_pred HHHhc---C-----C-------CCCCCEEEecc--CCCCch
Q 007781 434 AIDKQ---N-----F-------VSPPPVAILPA--GTGNDL 457 (590)
Q Consensus 434 ~L~~~---~-----~-------~~~~plgILPl--GTGNDf 457 (590)
.+.-. + + ...+|+..||. |||-..
T Consensus 110 ~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSev 150 (387)
T 3bfj_A 110 GIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTASEV 150 (387)
T ss_dssp HHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCGGG
T ss_pred HHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCccccc
Confidence 65431 0 1 14679999997 555433
No 79
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=39.36 E-value=78 Score=29.19 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=46.8
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEE---eccCCchHHHHHHHhCCC----CeEEEEcCcchHHHHHHHHH
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VEL---SSTQGPEVGLFLFRKVPH----FRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l---~~t~~p~~a~~l~~~~~~----~~Vvv~GGDGTV~~Vln~L~ 436 (590)
.+.||. |+..--.+.++....|....+ ||+ .....|+...++.+++.. ..|.++||.+-|.-|+.++-
T Consensus 5 ~V~Iim----gs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 80 (163)
T 3ors_A 5 KVAVIM----GSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLT 80 (163)
T ss_dssp CEEEEE----SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHC
T ss_pred eEEEEE----CcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhcc
Confidence 455654 332222344444444443333 443 334568888888876632 23668999999999999985
Q ss_pred hcCCCCCCCEEEeccCCC
Q 007781 437 KQNFVSPPPVAILPAGTG 454 (590)
Q Consensus 437 ~~~~~~~~plgILPlGTG 454 (590)
..||-=+|.-++
T Consensus 81 ------~~PVIgVP~~~~ 92 (163)
T 3ors_A 81 ------TLPVIGVPIETK 92 (163)
T ss_dssp ------SSCEEEEEECCT
T ss_pred ------CCCEEEeeCCCC
Confidence 345544555454
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=38.08 E-value=19 Score=27.26 Aligned_cols=29 Identities=38% Similarity=0.995 Sum_probs=23.8
Q ss_pred CCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 169 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
..+|.+|++. + .-+.|..|.+.+|-.|..
T Consensus 5 ~~~C~vC~~~--g------~ll~Cd~C~~~fH~~Cl~ 33 (60)
T 2puy_A 5 EDFCSVCRKS--G------QLLMCDTCSRVYHLDCLD 33 (60)
T ss_dssp CSSCTTTCCC--S------SCEECSSSSCEECGGGSS
T ss_pred CCCCcCCCCC--C------cEEEcCCCCcCEECCcCC
Confidence 4699999873 2 237899999999999985
No 81
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=37.66 E-value=37 Score=36.77 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHH---HHHHhcCCCCCCCEEEeccCCCCchh
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVL---NAIDKQNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vl---n~L~~~~~~~~~plgILPlGTGNDfA 458 (590)
.+.+.+++.+-+.++++|||||+.-+. +.+.+.+ ...++--||-===||+.
T Consensus 180 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g--~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 180 EMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRG--VDISVFGVPKTIDNDLS 233 (487)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHT--CCCEEEEEECCTTSSCC
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhC--CCceEEeccccccCCCC
Confidence 444445555667899999999988542 2333333 35789999988889996
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=37.21 E-value=16 Score=28.07 Aligned_cols=35 Identities=23% Similarity=0.529 Sum_probs=26.1
Q ss_pred CccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 92 P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
-.+|.+|...-... .+..+.|+.|...+|..|+.-
T Consensus 6 ~~~C~vC~~~~~~~---------~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEA---------PNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBT---------TBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCC---------CCCEEECCCCChHHHhhhCCC
Confidence 36899999753211 134579999999999999975
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=36.85 E-value=17 Score=27.82 Aligned_cols=31 Identities=29% Similarity=0.751 Sum_probs=24.7
Q ss_pred CCCcccccCCCCCcCCCCCCCcceecccccccchhhhcc
Q 007781 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (590)
Q Consensus 168 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 206 (590)
...+|.+|++. + .-+.|-.|.+.+|-.|..-
T Consensus 10 ~~~~C~vC~~~--g------~ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQG--G------EIILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSCC--S------SEEECSSSSCEEEHHHHCT
T ss_pred CCCCCccCCCC--C------cEEECCCCChhhhhhccCC
Confidence 45799999873 2 3478999999999999863
No 84
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.74 E-value=15 Score=36.02 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=26.4
Q ss_pred CCcccccCCCCCcCCCCCCCcceecccccccchhhhccC
Q 007781 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (590)
Q Consensus 169 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~ 207 (590)
-..|..|.+... +|.+|.-|+..+|..|..+.
T Consensus 180 i~~C~iC~~iv~-------~g~~C~~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 180 VKICNICHSLLI-------QGQSCETCGIRMHLPCVAKY 211 (238)
T ss_dssp CCBCTTTCSBCS-------SCEECSSSCCEECHHHHHHH
T ss_pred CCcCcchhhHHh-------CCcccCccChHHHHHHHHHH
Confidence 458999977553 46999999999999999764
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=36.49 E-value=18 Score=27.56 Aligned_cols=30 Identities=33% Similarity=0.948 Sum_probs=23.7
Q ss_pred CCCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 168 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
...+|.+|+.. + .-+.|-.|.+.+|..|..
T Consensus 8 ~~~~C~vC~~~--g------~ll~Cd~C~~~fH~~Cl~ 37 (61)
T 1mm2_A 8 HMEFCRVCKDG--G------ELLCCDTCPSSYHIHCLN 37 (61)
T ss_dssp SCSSCTTTCCC--S------SCBCCSSSCCCBCSSSSS
T ss_pred CCCcCCCCCCC--C------CEEEcCCCCHHHcccccC
Confidence 35689999862 2 237899999999999985
No 86
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=36.45 E-value=59 Score=34.11 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcE--EEEeccC---CchHH---HHHHHhCCC---CeEEEEcCcchHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQV--VELSSTQ---GPEVG---LFLFRKVPH---FRVLVCGGDGTVG 429 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV--~~l~~t~---~p~~a---~~l~~~~~~---~~Vvv~GGDGTV~ 429 (590)
.++++||.++.... .+.+++...|.. .++ +.+...+ ..+.. .+.+++.+. +.||++|| |++.
T Consensus 62 ~~rvlIVtd~~v~~----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gsv~ 136 (390)
T 3okf_A 62 KQKVVIVTNHTVAP----LYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GVIG 136 (390)
T ss_dssp TCEEEEEEETTTHH----HHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHH
T ss_pred CCEEEEEECCcHHH----HHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cHHh
Confidence 57899999986643 345556555543 233 2232111 11222 233444432 56788877 8888
Q ss_pred HHHHHHHhcCCCCCCCEEEecc
Q 007781 430 WVLNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 430 ~Vln~L~~~~~~~~~plgILPl 451 (590)
.+.-.+... +...+|+..||.
T Consensus 137 D~ak~~Aa~-~~rgip~I~IPT 157 (390)
T 3okf_A 137 DLVGFAAAC-YQRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHH-BTTCCEEEEEEC
T ss_pred hHHHHHHHH-hcCCCCEEEeCC
Confidence 887766421 125688999997
No 87
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=35.56 E-value=16 Score=28.64 Aligned_cols=35 Identities=26% Similarity=0.595 Sum_probs=26.1
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~ 137 (590)
.+.|| +|+..-.+ ..-.+|+.|+.=.|..|+....
T Consensus 18 ~~~~C-iC~~~~~~-----------~~MIqCd~C~~WfH~~Cvgi~~ 52 (68)
T 3o70_A 18 GLVTC-FCMKPFAG-----------RPMIECNECHTWIHLSCAKIRK 52 (68)
T ss_dssp TCCCS-TTCCCCTT-----------CCEEECTTTCCEEETTTTTCCT
T ss_pred CceEe-ECCCcCCC-----------CCEEECCCCCccccccccCcCc
Confidence 67899 99874332 1226999999999999997643
No 88
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=35.45 E-value=54 Score=33.42 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcE--EEEeccCC-chHHHHHHHhC---CCCeEEEEcCcchHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQV--VELSSTQG-PEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAI 435 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV--~~l~~t~~-p~~a~~l~~~~---~~~~Vvv~GGDGTV~~Vln~L 435 (590)
++++||..+..-. ...+++...|.. .++ |+. ..++ .+...+. +.+ ..+.||++|| |++..+.-.+
T Consensus 35 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~-~~~~~~~~v~~~-~~~~~~~~d~IIavGG-Gsv~D~aK~v 107 (354)
T 3ce9_A 35 KRVSLYFGEGIYE----LFGETIEKSIKSSNIEIEAVET-VKNIDFDEIGTN-AFKIPAEVDALIGIGG-GKAIDAVKYM 107 (354)
T ss_dssp SEEEEEEETTHHH----HHHHHHHHHHHTTTCEEEEEEE-ECCCBHHHHHHH-HTTSCTTCCEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHHcCCeEEEEec-CCCCCHHHHHHH-HHhhhcCCCEEEEECC-hHHHHHHHHH
Confidence 5889998875543 244555555543 333 331 2222 2233344 333 3467888887 8888877776
Q ss_pred HhcCCCCCCCEEEeccCCC
Q 007781 436 DKQNFVSPPPVAILPAGTG 454 (590)
Q Consensus 436 ~~~~~~~~~plgILPlGTG 454 (590)
.-. ..+|+..||.=.|
T Consensus 108 A~~---~~~p~i~IPTT~~ 123 (354)
T 3ce9_A 108 AFL---RKLPFISVPTSTS 123 (354)
T ss_dssp HHH---HTCCEEEEESCCS
T ss_pred Hhh---cCCCEEEecCccc
Confidence 532 4689999997433
No 89
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.38 E-value=21 Score=29.20 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEeccCCchHHHHHHHh
Q 007781 360 PPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRK 413 (590)
Q Consensus 360 p~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~~t~~p~~a~~l~~~ 413 (590)
....+|+.||+|-.|-+ -...|+.......| |++.++..|++..+-.++
T Consensus 48 kdngkplvvfvngasqn-----dvnefqneakkegvsydvlkstdpeeltqrvre 97 (112)
T 2lnd_A 48 KDNGKPLVVFVNGASQN-----DVNEFQNEAKKEGVSYDVLKSTDPEELTQRVRE 97 (112)
T ss_dssp TTCCSCEEEEECSCCHH-----HHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHH
T ss_pred HhcCCeEEEEecCcccc-----cHHHHHHHHHhcCcchhhhccCCHHHHHHHHHH
Confidence 45689999999976642 12333332222344 788778889877665554
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=35.34 E-value=22 Score=27.49 Aligned_cols=30 Identities=30% Similarity=0.855 Sum_probs=24.1
Q ss_pred CCCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 168 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
...+|.+|+.. + .-+.|-.|.+.+|..|..
T Consensus 7 ~~~~C~vC~~~--g------~ll~CD~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 7 NEDECAVCRDG--G------ELICCDGCPRAFHLACLS 36 (66)
T ss_dssp CCCSBSSSSCC--S------SCEECSSCCCEECTTTSS
T ss_pred CCCCCccCCCC--C------CEEEcCCCChhhcccccC
Confidence 45799999863 2 237899999999999985
No 91
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=34.80 E-value=21 Score=28.22 Aligned_cols=36 Identities=31% Similarity=0.605 Sum_probs=25.9
Q ss_pred CCCCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 167 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
....+|.+|++.=... . ...+-|-.|.+.||..|..
T Consensus 14 ~~~~~C~vC~~~~s~~--~-~~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 14 DEDAVCSICMDGESQN--S-NVILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CSSCSCSSSCCCCCCS--S-SCEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCCC--C-CCEEECCCCCCccccccCC
Confidence 4467999998752110 0 1357899999999999985
No 92
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.50 E-value=25 Score=26.75 Aligned_cols=36 Identities=22% Similarity=0.540 Sum_probs=27.0
Q ss_pred CCCCcccccCCCCCcCCCCCCCcceecccccccchhhhcc
Q 007781 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (590)
Q Consensus 167 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 206 (590)
....+|.+|+++-... ..-+.|.-|..=+|.+|...
T Consensus 4 ~e~~~C~~C~~~~~~~----~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 4 GSSGQCGACGESYAAD----EFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SSCCCCSSSCCCCCSS----SCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCCccCCC----CCEEEccCCCCCCCccccCc
Confidence 4567999998875311 12478999999999999854
No 93
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=30.96 E-value=97 Score=29.05 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=46.9
Q ss_pred CCCCCcE-EEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEE---eccCCchHHHHHHHhCC--C--CeEEEEcCcchHHH
Q 007781 360 PPDARPL-LVFINKKSGAQRGDSLRQRLNLLLNPVQV-VEL---SSTQGPEVGLFLFRKVP--H--FRVLVCGGDGTVGW 430 (590)
Q Consensus 360 p~~~~~l-lVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l---~~t~~p~~a~~l~~~~~--~--~~Vvv~GGDGTV~~ 430 (590)
+..++|+ .||.=..| --.+.+.....|+..+| |++ +....|+...++++++. . ..|.++||.+-|--
T Consensus 18 ~~~mkp~V~IimGS~S----D~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpG 93 (181)
T 4b4k_A 18 GSHMKSLVGVIMGSTS----DWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG 93 (181)
T ss_dssp ----CCSEEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH
T ss_pred CCCCCccEEEEECCHh----HHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchh
Confidence 3446664 45543333 23455555555655444 443 33356888888888763 2 23668999999999
Q ss_pred HHHHHHhcCCCCCCCEEEecc
Q 007781 431 VLNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 431 Vln~L~~~~~~~~~plgILPl 451 (590)
++.++- ..||-=+|.
T Consensus 94 vvAa~T------~~PVIGVPv 108 (181)
T 4b4k_A 94 MVAAKT------NLPVIGVPV 108 (181)
T ss_dssp HHHTTC------CSCEEEEEC
T ss_pred hHHhcC------CCCEEEEec
Confidence 888863 345544555
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.81 E-value=25 Score=29.22 Aligned_cols=30 Identities=37% Similarity=0.931 Sum_probs=23.9
Q ss_pred CCCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 168 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
...+|.+|++. + .-+.|-.|.+.+|-.|..
T Consensus 24 n~~~C~vC~~~--g------~LL~CD~C~~~fH~~Cl~ 53 (88)
T 1fp0_A 24 SATICRVCQKP--G------DLVMCNQCEFCFHLDCHL 53 (88)
T ss_dssp SSSCCSSSCSS--S------CCEECTTSSCEECTTSSS
T ss_pred CCCcCcCcCCC--C------CEEECCCCCCceecccCC
Confidence 35699999874 2 237899999999999983
No 95
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=30.75 E-value=31 Score=31.93 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=26.1
Q ss_pred EEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchhhhhc
Q 007781 421 VCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLF 462 (590)
Q Consensus 421 v~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfAR~Lg 462 (590)
.+|||-| .+++.-+...-....|-+.+|=+|| ||+++..+
T Consensus 57 Gi~G~tt-~~~l~r~~~~v~~~~Pd~vvi~~G~-ND~~~~~~ 96 (209)
T 4hf7_A 57 GISGQTS-YQFLLRFREDVINLSPALVVINAGT-NDVAENTG 96 (209)
T ss_dssp ECTTCCH-HHHHHHHHHHTGGGCCSEEEECCCH-HHHTTSSS
T ss_pred ccCcccH-HHHHHHHHHHHHhcCCCEEEEEeCC-CcCccccc
Confidence 5689865 4455555442222457889999997 99876543
No 96
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.69 E-value=21 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=25.6
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~~ 137 (590)
.+.|| +|...-. .| ..-.+|+.|..=.|..|+....
T Consensus 15 ~~~~C-~C~~~~~--~g--------~~mI~Cd~C~~W~H~~Cvg~~~ 50 (72)
T 1wee_A 15 WKVDC-KCGTKDD--DG--------ERMLACDGCGVWHHTRCIGINN 50 (72)
T ss_dssp SEECC-TTCCCSC--CS--------SCEEECSSSCEEEETTTTTCCT
T ss_pred cceEe-eCCCccC--CC--------CcEEECCCCCCccCCeeeccCc
Confidence 56799 7987532 11 1125999999999999998753
No 97
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=30.47 E-value=18 Score=34.10 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 93 ~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
.||.+|.+....... ...-.+|+.|..=+|..|...
T Consensus 3 ~~CpiC~k~Y~~~~~-------~~~MIqCd~C~~W~H~~Cvgi 38 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDY-------ESKMMQCGKCDRWVHSKCENL 38 (183)
T ss_dssp CBCTTTCCBCTTCCT-------TCCEEECTTTCCEEEGGGSSC
T ss_pred CcCCCCcCccCCccc-------CCCeEECCCCCcccchhcccc
Confidence 589999976543211 112369999999999999965
No 98
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=30.40 E-value=97 Score=28.39 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCCcE-EEEe---ccCCchHHHHHHHhCCCC-eEEEEcCcchHHHHHHHHHhcCCCCCCCEEEecc
Q 007781 381 SLRQRLNLLLNPVQV-VELS---STQGPEVGLFLFRKVPHF-RVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 381 ~~~~~l~~lL~~~qV-~~l~---~t~~p~~a~~l~~~~~~~-~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPl 451 (590)
.+.++....|+..++ ||+. ....|+...++.+++... .|.++||.|-+--|+.++- ..||-=+|.
T Consensus 13 ~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvva~~t------~~PVIgVP~ 82 (157)
T 2ywx_A 13 KIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVASLT------TKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHHHTTC------SSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHHHhcc------CCCEEEecC
Confidence 344444444443333 4433 345678888888876544 4678999999999998874 345555565
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.28 E-value=22 Score=33.47 Aligned_cols=29 Identities=38% Similarity=0.961 Sum_probs=23.0
Q ss_pred CCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 169 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
..+|.+|++. + .-+.|..|.+.+|-.|..
T Consensus 2 ~~~C~~C~~~--g------~ll~Cd~C~~~~H~~Cl~ 30 (189)
T 2ro1_A 2 ATICRVCQKP--G------DLVMCNQCEFCFHLDCHL 30 (189)
T ss_dssp CCCBTTTCCC--S------SCCCCTTTCCBCCSTTST
T ss_pred CCcCccCCCC--C------ceeECCCCCchhccccCC
Confidence 4689999863 2 236899999999999984
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=29.86 E-value=9.9 Score=30.12 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~ 136 (590)
...||.+|...-.+. .-..|+.|..-.|..|+...
T Consensus 17 ~~~~C~~C~~~~~~~-----------~mi~CD~C~~wfH~~Cv~~~ 51 (75)
T 2k16_A 17 QIWICPGCNKPDDGS-----------PMIGCDDCDDWYHWPCVGIM 51 (75)
T ss_dssp EEECBTTTTBCCSSC-----------CEEECSSSSSEEEHHHHTCS
T ss_pred CCcCCCCCCCCCCCC-----------CEEEcCCCCcccccccCCCC
Confidence 567999998764321 23699999999999998753
No 101
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=29.30 E-value=70 Score=32.59 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccCCCCchh
Q 007781 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 406 ~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlGTGNDfA 458 (590)
.+.+.+++.+-+.++++|||||+.-+ +.|.+ ...|+--||-===||+.
T Consensus 84 ~~~~~l~~~~Id~L~~IGGdgS~~~a-~~l~~----~~i~vigiPkTIDNDl~ 131 (319)
T 4a3s_A 84 KGIANLKKLGIEGLVVIGGDGSYMGA-KKLTE----HGFPCVGVPGTIDNDIP 131 (319)
T ss_dssp HHHHHHHHHTCCEEEEEECTTHHHHH-HHHHH----TTCCEEEEEEETTCCCT
T ss_pred HHHHHHHHcCCCEEEEeCCcHHHHHH-HHHhc----cCCcEEEeeccccCCCC
Confidence 34444555566789999999998765 45555 34788889988889996
No 102
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=28.62 E-value=30 Score=26.36 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=23.9
Q ss_pred CccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 92 P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
-.+|.+|.+. + ..+.|+.|....|..|+..
T Consensus 9 ~~~C~vC~~~--g------------~ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 9 MEFCRVCKDG--G------------ELLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp CSSCTTTCCC--S------------SCBCCSSSCCCBCSSSSSS
T ss_pred CCcCCCCCCC--C------------CEEEcCCCCHHHcccccCC
Confidence 3689999862 1 2369999999999999985
No 103
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=28.49 E-value=79 Score=32.77 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cE--EEEeccCC-c---hHHHHHHHhCCCCeEEEEcCcchHHHHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQG-P---EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV--~~l~~t~~-p---~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~ 434 (590)
.++++||..+.--. ..+.+++...|... ++ |+-...+. . +.+.+.+++.+.+.||++|| |++..+.-.
T Consensus 31 ~~~~liVtd~~~~~---~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gsv~D~aK~ 106 (383)
T 3ox4_A 31 FKNALIVSDAFMNK---SGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGG-GSPHDCAKA 106 (383)
T ss_dssp CCEEEEEEEHHHHH---TTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHH
T ss_pred CCEEEEEECCchhh---CchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHH
Confidence 46788888753211 11455565566543 32 43222111 1 23445555556788999999 888777666
Q ss_pred HHhc---C------------CCCCCCEEEecc--CCCCch
Q 007781 435 IDKQ---N------------FVSPPPVAILPA--GTGNDL 457 (590)
Q Consensus 435 L~~~---~------------~~~~~plgILPl--GTGNDf 457 (590)
+.-. + ....+|+..||. |||-..
T Consensus 107 ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSe~ 146 (383)
T 3ox4_A 107 IALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTASEM 146 (383)
T ss_dssp HHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCTTT
T ss_pred HHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchhhc
Confidence 5321 0 023689999997 555443
No 104
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=28.43 E-value=1.3e+02 Score=28.05 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEE---eccCCchHHHHHHHhCC----CCeEEEEcCcchHHHHHHHHH
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VEL---SSTQGPEVGLFLFRKVP----HFRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l---~~t~~p~~a~~l~~~~~----~~~Vvv~GGDGTV~~Vln~L~ 436 (590)
.+.||.=..| --.+.++....|+...+ |++ +....|+...++++++. ...|.++||.+-|.-|+.++-
T Consensus 9 ~V~IimgS~S----D~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 84 (174)
T 3lp6_A 9 RVGVIMGSDS----DWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAAT 84 (174)
T ss_dssp SEEEEESCGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHC
T ss_pred eEEEEECcHH----hHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhcc
Confidence 4666643322 22344444444443333 443 33356788888876542 234778999999999999985
Q ss_pred hcCCCCCCCEEEeccCCCC
Q 007781 437 KQNFVSPPPVAILPAGTGN 455 (590)
Q Consensus 437 ~~~~~~~~plgILPlGTGN 455 (590)
..||-=+|.-+++
T Consensus 85 ------~~PVIgVP~~~~~ 97 (174)
T 3lp6_A 85 ------PLPVIGVPVPLGR 97 (174)
T ss_dssp ------SSCEEEEEECCSS
T ss_pred ------CCCEEEeeCCCCC
Confidence 3455555655553
No 105
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.76 E-value=17 Score=29.08 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=25.2
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~ 136 (590)
.+.|| +|...--. . ..-.+|+.|..=.|..|+...
T Consensus 11 ~~~~C-~C~~~~d~-~---------~~MIqCd~C~~WfH~~Cvgl~ 45 (79)
T 1wep_A 11 VPVYC-LCRQPYNV-N---------HFMIECGLCQDWFHGSCVGIE 45 (79)
T ss_dssp CCCCS-TTSCSCCS-S---------SCEEEBTTTCCEEEHHHHTCC
T ss_pred CccEE-EcCCccCC-C---------CceEEcCCCCCcEEeeecCcc
Confidence 67888 99875321 1 122699999999999998763
No 106
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=27.11 E-value=29 Score=26.83 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=24.1
Q ss_pred CccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 92 P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
-.+|.+|.+. + ..+.|+.|....|..|+..
T Consensus 8 ~~~C~vC~~~--g------------~ll~CD~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 8 EDECAVCRDG--G------------ELICCDGCPRAFHLACLSP 37 (66)
T ss_dssp CCSBSSSSCC--S------------SCEECSSCCCEECTTTSSS
T ss_pred CCCCccCCCC--C------------CEEEcCCCChhhcccccCC
Confidence 4699999963 1 2369999999999999984
No 107
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=26.60 E-value=25 Score=27.86 Aligned_cols=36 Identities=25% Similarity=0.627 Sum_probs=26.6
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
.-.+|.+|.+.-... .+..+.|+.|...+|..|+..
T Consensus 15 ~~~~C~vC~~~~s~~---------~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 15 EDAVCSICMDGESQN---------SNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp SSCSCSSSCCCCCCS---------SSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCC---------CCCEEECCCCCCccccccCCC
Confidence 457999998753111 134579999999999999875
No 108
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=26.59 E-value=12 Score=34.45 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=24.7
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
.+.|| +|+..--. . +.-.+|+.|..-.|..|+..
T Consensus 7 ~~~~C-~C~~~~~~-~---------~~mi~Cd~C~~WfH~~Cv~~ 40 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE-S---------KFYIGCDRCQNWYHGRCVGI 40 (174)
T ss_dssp CCEET-TTTEECCT-T---------SCEEECTTTCCEEEHHHHTC
T ss_pred CCcEe-eCCCCCCC-C---------CCEeECCCCCchhChhhcCC
Confidence 67899 99874211 1 12369999999999999864
No 109
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.40 E-value=19 Score=26.12 Aligned_cols=31 Identities=35% Similarity=0.621 Sum_probs=23.2
Q ss_pred cccccCCCCCCCCCCCCcccCCcccccccccccccCCCcccc
Q 007781 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (590)
Q Consensus 94 ~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~ 135 (590)
+|.+|++.=. ....+.|+.|....|..|+.-
T Consensus 2 ~C~vC~~~~~-----------~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGE-----------DDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSC-----------CSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCC-----------CCCEEECCCCChhhCcccCCC
Confidence 6889986421 123469999999999999964
No 110
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=26.21 E-value=26 Score=27.63 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=26.6
Q ss_pred CCCCcccccCCCCCcCCCCCCCcceecccccccchhhhcc
Q 007781 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (590)
Q Consensus 167 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 206 (590)
....+|.+|++.-.+. .-+.|-.|.+-+|..|...
T Consensus 16 ~~~~~C~~C~~~~~~~-----~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 16 NQIWICPGCNKPDDGS-----PMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp CEEECBTTTTBCCSSC-----CEEECSSSSSEEEHHHHTC
T ss_pred CCCcCCCCCCCCCCCC-----CEEEcCCCCcccccccCCC
Confidence 3456899998875332 2478999999999999864
No 111
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.19 E-value=36 Score=32.00 Aligned_cols=36 Identities=31% Similarity=0.678 Sum_probs=26.4
Q ss_pred CCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 169 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
+.+|.+|+++....-. +..-+.|.-|.+=+|.+|..
T Consensus 2 G~~CpiC~k~Y~~~~~-~~~MIqCd~C~~W~H~~Cvg 37 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDY-ESKMMQCGKCDRWVHSKCEN 37 (183)
T ss_dssp CCBCTTTCCBCTTCCT-TCCEEECTTTCCEEEGGGSS
T ss_pred cCcCCCCcCccCCccc-CCCeEECCCCCcccchhccc
Confidence 3579999987643211 12357999999999999984
No 112
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=26.05 E-value=86 Score=32.12 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcE-EEEeccCCch----HHHHHHHhCCCCeEEEEcCcchHHHHHHHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQV-VELSSTQGPE----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV-~~l~~t~~p~----~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~ 436 (590)
++++||..+..-. .+.+++...|.. .++ +.+...+.+. .+.+.+++.+.+.||++|| |++..+.-.+.
T Consensus 32 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 106 (370)
T 1jq5_A 32 NKTVVIADEIVWK----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAVA 106 (370)
T ss_dssp SEEEEEECHHHHH----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHH
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHHH
Confidence 6889998775533 234555555543 233 2222212222 2334455566788998988 78888777765
Q ss_pred hcCCCCCCCEEEecc
Q 007781 437 KQNFVSPPPVAILPA 451 (590)
Q Consensus 437 ~~~~~~~~plgILPl 451 (590)
-. ..+|+..||.
T Consensus 107 ~~---~~~p~i~IPT 118 (370)
T 1jq5_A 107 DE---LDAYIVIVPT 118 (370)
T ss_dssp HH---HTCEEEEEES
T ss_pred Hh---cCCCEEEecc
Confidence 32 3579999997
No 113
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.73 E-value=30 Score=28.40 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=24.9
Q ss_pred CCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 169 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
..+|.+|++.-...- ...+.|--|.+.||..|+.
T Consensus 16 ~~~C~vC~~~~~~~~---~~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 16 GLACVVCRQMTVASG---NQLVECQECHNLYHQDCHK 49 (88)
T ss_dssp CCSCSSSCCCCCCTT---CCEEECSSSCCEEETTTSS
T ss_pred CCcCCCCCCCCCCCC---CceEECCCCCCeEcCccCC
Confidence 468999988642100 1347899999999999974
No 114
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=25.61 E-value=1.1e+02 Score=31.24 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCCCCChhHHHHHHHHhhCCCcE--EEEeccC---Cch---HHHHHHHhCCC---CeEEEEcCcchHHHH
Q 007781 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV--VELSSTQ---GPE---VGLFLFRKVPH---FRVLVCGGDGTVGWV 431 (590)
Q Consensus 363 ~~~llVivNPkSG~~~g~~~~~~l~~lL~~~qV--~~l~~t~---~p~---~a~~l~~~~~~---~~Vvv~GGDGTV~~V 431 (590)
.++++|+.++..... ..+.+...|...++ +.+...+ ..+ .+.+.+++.+. +.||++|| |++..+
T Consensus 26 ~~~~livtd~~v~~~----~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D~ 100 (343)
T 3clh_A 26 KQKALIISDSIVAGL----HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVISDM 100 (343)
T ss_dssp SSCEEEEEEHHHHTT----THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHHH
T ss_pred CCEEEEEECCcHHHH----HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHHHHH
Confidence 467899988765432 35666666654443 2222111 112 22334444443 66888887 788887
Q ss_pred HHHHHhcCCCCCCCEEEecc
Q 007781 432 LNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 432 ln~L~~~~~~~~~plgILPl 451 (590)
.-.+... +....|+..||.
T Consensus 101 ak~~A~~-~~rgip~i~IPT 119 (343)
T 3clh_A 101 VGFASSI-YFRGIDFINIPT 119 (343)
T ss_dssp HHHHHHH-BTTCCEEEEEEC
T ss_pred HHHHHHH-hccCCCEEEeCC
Confidence 7766521 125688999994
No 115
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=24.34 E-value=35 Score=31.67 Aligned_cols=29 Identities=31% Similarity=1.062 Sum_probs=23.0
Q ss_pred CCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 169 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
..+|.+|+.. + .-+.|-.|.+.+|..|..
T Consensus 4 ~~~C~~C~~~--g------~ll~Cd~C~~~~H~~C~~ 32 (184)
T 3o36_A 4 EDWCAVCQNG--G------ELLCCEKCPKVFHLSCHV 32 (184)
T ss_dssp CSSCTTTCCC--S------SCEECSSSSCEECTTTSS
T ss_pred CCccccCCCC--C------eeeecCCCCcccCccccC
Confidence 4689999753 2 247899999999999973
No 116
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=24.25 E-value=33 Score=28.18 Aligned_cols=35 Identities=31% Similarity=0.587 Sum_probs=25.1
Q ss_pred CCCcccccCCCCCcCCCCCCCcceecccccccchhhhc
Q 007781 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (590)
Q Consensus 168 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 205 (590)
...+|.+|+..=.... ...+.|-.|.+.||-.|..
T Consensus 24 ~~~~C~vC~~~~s~~~---~~ll~CD~C~~~fH~~Cl~ 58 (88)
T 2l43_A 24 EDAVCSICMDGESQNS---NVILFCDMCNLAVHQECYG 58 (88)
T ss_dssp CCCCCSSCCSSSSCSE---EEEEECSSSCCCCCHHHHT
T ss_pred CCCcCCcCCCCCCCCC---CCEEECCCCCchhhcccCC
Confidence 4579999987421100 1347899999999999985
No 117
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.97 E-value=40 Score=28.01 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCCccccccCCCCCCCCCCCCcccCCcccccccccc---cccCCCccccc
Q 007781 90 GKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICG---AAAHLSCSLSA 136 (590)
Q Consensus 90 ~~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~---~~vH~~C~~~~ 136 (590)
..+.|| +|++.-.+ .| ..|+.|. --.|..|+...
T Consensus 24 ~~~~yC-iC~~~~~g-----~M-------I~CD~c~C~~eWfH~~CVgl~ 60 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYG-----PM-------VACDNPACPFEWFHYGCVGLK 60 (90)
T ss_dssp CCSCCS-TTTCCCSS-----SE-------ECCCSSSCSCSCEETTTSSCS
T ss_pred CCCcEE-EeCCCCCC-----CE-------EEecCCCCccccCcCccCCCC
Confidence 367899 99974332 22 5899976 67899999753
No 118
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=23.94 E-value=2.1e+02 Score=26.81 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEEe---ccCCchHHHHHHHhCC----CCeEEEEcCcchHHHHHHHHH
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELS---STQGPEVGLFLFRKVP----HFRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l~---~t~~p~~a~~l~~~~~----~~~Vvv~GGDGTV~~Vln~L~ 436 (590)
.+.||.=..|- -.+.+.....|+...+ ||+. ....|+...++.+++. ...|.++||.+-|--|+.++-
T Consensus 23 ~V~IimGS~SD----~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 98 (182)
T 1u11_A 23 VVGIIMGSQSD----WETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWT 98 (182)
T ss_dssp SEEEEESSGGG----HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHC
T ss_pred EEEEEECcHHH----HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhcc
Confidence 47777533332 2344444444443333 4433 3456888888887653 223668999999999999985
Q ss_pred hcCCCCCCCEEEeccCCC
Q 007781 437 KQNFVSPPPVAILPAGTG 454 (590)
Q Consensus 437 ~~~~~~~~plgILPlGTG 454 (590)
..||-=+|.-++
T Consensus 99 ------~~PVIgVP~~~~ 110 (182)
T 1u11_A 99 ------RLPVLGVPVESR 110 (182)
T ss_dssp ------SSCEEEEEECCT
T ss_pred ------CCCEEEeeCCCC
Confidence 345555555444
No 119
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.84 E-value=43 Score=29.86 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=29.9
Q ss_pred CCCcccccCCCCCcCCCCCCCcceecccccccchhhhccC
Q 007781 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (590)
Q Consensus 168 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~ 207 (590)
....|..|.++++ |+.+ .+-.|..|+..|=.+|-...
T Consensus 54 ~~~~C~~C~~~~g--~l~~-~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLG--MLGS-ASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCS--TTSC-CEEECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcc--cccC-CCCCCCCCCcccccccCCcc
Confidence 4579999999885 3332 57899999999999998765
No 120
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=23.40 E-value=97 Score=34.10 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=33.3
Q ss_pred HHHHHhCCCCeEEEEcCcchHHHHHHHHHhc--CCCCCCCEEEeccCCCCchh
Q 007781 408 LFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ--NFVSPPPVAILPAGTGNDLA 458 (590)
Q Consensus 408 ~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~--~~~~~~plgILPlGTGNDfA 458 (590)
.+.+++.+-+.++++|||||+.-+. .|.+. ......++--||-==-||++
T Consensus 159 ~~~l~~~~Id~LvvIGGdgS~~~A~-~L~e~~~~~~~~i~vIGiPkTIDNDl~ 210 (555)
T 2f48_A 159 LFVAKENNLNAIIIIGGDDSNTNAA-ILAEYFKKNGENIQVIGVPKTIDADLR 210 (555)
T ss_dssp HHHHHHTTCSEEEEEESHHHHHHHH-HHHHHHHHTTCCCEEEEEEEETTCCCC
T ss_pred HHHHHHcCCCEEEEeCCCcHHHHHH-HHHHHHHHhCCCCcEEEeccccCCCCC
Confidence 3344455667899999999986543 23221 11235788899987789995
No 121
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.25 E-value=22 Score=28.19 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=24.9
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcccccccccccccCCCccccc
Q 007781 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (590)
Q Consensus 91 ~P~~C~vC~~~l~g~qg~g~~~~~~~~~~~C~vC~~~vH~~C~~~~ 136 (590)
...|| +|+..-.+ ..-.+|+.|..=.|..|+...
T Consensus 15 ~~~~C-~C~~~~~~-----------~~MI~Cd~C~~WfH~~Cvgl~ 48 (76)
T 1wem_A 15 NALYC-ICRQPHNN-----------RFMICCDRCEEWFHGDCVGIS 48 (76)
T ss_dssp TCCCS-TTCCCCCS-----------SCEEECSSSCCEEEHHHHSCC
T ss_pred CCCEE-ECCCccCC-----------CCEEEeCCCCCcEeCeEEccc
Confidence 45788 89875432 122699999999999999764
No 122
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=21.70 E-value=23 Score=27.51 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=9.8
Q ss_pred eEEEEcCcchH
Q 007781 418 RVLVCGGDGTV 428 (590)
Q Consensus 418 ~Vvv~GGDGTV 428 (590)
-|+|++||||+
T Consensus 40 GViVg~~dgtv 50 (65)
T 2x9a_A 40 GIGIGYDNDTS 50 (65)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEECCCCCE
Confidence 39999999997
No 123
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=20.94 E-value=1.9e+02 Score=26.90 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=41.2
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHHhhCCCcE-EEE---eccCCchHHHHHHHhCC--C--CeEEEEcCcchHHHHHHHHH
Q 007781 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VEL---SSTQGPEVGLFLFRKVP--H--FRVLVCGGDGTVGWVLNAID 436 (590)
Q Consensus 365 ~llVivNPkSG~~~g~~~~~~l~~lL~~~qV-~~l---~~t~~p~~a~~l~~~~~--~--~~Vvv~GGDGTV~~Vln~L~ 436 (590)
.+.||. |+..--.+.++....|+...+ ||+ +....|+...++++++. . ..|.++||.+-|--|+.++-
T Consensus 14 ~V~Iim----GS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 89 (174)
T 3kuu_A 14 KIAIVM----GSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKT 89 (174)
T ss_dssp CEEEEE----SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTC
T ss_pred cEEEEE----CcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcc
Confidence 366664 332222344544444443333 443 33456888888887763 1 23668999999999999974
No 124
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=20.84 E-value=80 Score=32.81 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCCCCChhHHHHHHHHhhCC--CcE--EEEeccC-Cc--hHH---HHHHHhCC---CCeEEEEcCcchHHH
Q 007781 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQV--VELSSTQ-GP--EVG---LFLFRKVP---HFRVLVCGGDGTVGW 430 (590)
Q Consensus 364 ~~llVivNPkSG~~~g~~~~~~l~~lL~~--~qV--~~l~~t~-~p--~~a---~~l~~~~~---~~~Vvv~GGDGTV~~ 430 (590)
++++||.++.... +.+.+...|.. .++ +.+...+ .| +.. .+.+++.+ .+.||++|| |++..
T Consensus 44 ~rvlIVtd~~v~~-----~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-Gsv~D 117 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-GAATD 117 (368)
T ss_dssp SEEEEEECGGGHH-----HHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHHH
T ss_pred CEEEEEECccHHH-----HHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHH
Confidence 7899999886543 34455555543 333 2221111 11 222 23333322 466888888 88888
Q ss_pred HHHHHHhcCCCCCCCEEEecc
Q 007781 431 VLNAIDKQNFVSPPPVAILPA 451 (590)
Q Consensus 431 Vln~L~~~~~~~~~plgILPl 451 (590)
+.-.+... +...+|+..||.
T Consensus 118 ~ak~~Aa~-~~rgip~i~IPT 137 (368)
T 3qbe_A 118 VAGFAAAT-WLRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHH-GGGCCEEEEEEC
T ss_pred HHHHHHHH-hccCCcEEEECC
Confidence 77766521 124678989996
No 125
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=20.78 E-value=1.9e+02 Score=26.70 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=43.3
Q ss_pred HHHHHHHHhhCCCcE-EEEec---cCCchHHHHHHHhCCC---C-eEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccC
Q 007781 381 SLRQRLNLLLNPVQV-VELSS---TQGPEVGLFLFRKVPH---F-RVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAG 452 (590)
Q Consensus 381 ~~~~~l~~lL~~~qV-~~l~~---t~~p~~a~~l~~~~~~---~-~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlG 452 (590)
.+.++....|+...+ ||+.. ...|+...++++++.. . .|.++||.+-|--|+.++- ..||-=+|.-
T Consensus 19 ~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t------~~PVIgVP~~ 92 (166)
T 3oow_A 19 STMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKT------TLPVLGVPVK 92 (166)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTC------SSCEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhcc------CCCEEEeecC
Confidence 445555555554443 44432 3567888888877632 2 3668999999999999974 3455555654
Q ss_pred CC
Q 007781 453 TG 454 (590)
Q Consensus 453 TG 454 (590)
++
T Consensus 93 ~~ 94 (166)
T 3oow_A 93 SS 94 (166)
T ss_dssp CT
T ss_pred cC
Confidence 44
No 126
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.59 E-value=1.6e+02 Score=28.37 Aligned_cols=76 Identities=7% Similarity=0.065 Sum_probs=42.3
Q ss_pred CCCCcEEEEEcCCCCCCChhHHHHHHHHhhCCC--cEEEEeccCCchHHHHHHHhC-CCCeEEEEcCcchHHHHHHHHHh
Q 007781 361 PDARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPEVGLFLFRKV-PHFRVLVCGGDGTVGWVLNAIDK 437 (590)
Q Consensus 361 ~~~~~llVivNPkSG~~~g~~~~~~l~~lL~~~--qV~~l~~t~~p~~a~~l~~~~-~~~~Vvv~GGDGTV~~Vln~L~~ 437 (590)
++.+++.+|.+|... .+....+.+++.+... .+..... ...+++.+.++++ +....|.++.|.+.-.++.++.+
T Consensus 131 pg~~~I~~i~~~~~~--~~~~r~~g~~~al~~~gi~~~~~~~-~~~~~~~~~~~~l~~~~dai~~~~D~~a~g~~~~l~~ 207 (295)
T 3lft_A 131 PNVKTIGALYSSSED--NSKTQVEEFKAYAEKAGLTVETFAV-PSTNEIASTVTVMTSKVDAIWVPIDNTIASGFPTVVS 207 (295)
T ss_dssp TTCCEEEEEEETTCH--HHHHHHHHHHHHHHHTTCEEEEEEE-SSGGGHHHHHHHHTTTCSEEEECSCHHHHHTHHHHHH
T ss_pred CCCcEEEEEeCCCCc--chHHHHHHHHHHHHHcCCEEEEEec-CCHHHHHHHHHHHHhcCCEEEECCchhHHHHHHHHHH
Confidence 356899999988432 1333345555555433 3322111 2234444444443 34456777899888777777766
Q ss_pred cC
Q 007781 438 QN 439 (590)
Q Consensus 438 ~~ 439 (590)
..
T Consensus 208 ~~ 209 (295)
T 3lft_A 208 SN 209 (295)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 127
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=20.48 E-value=54 Score=32.48 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=36.1
Q ss_pred CCchHHHHHHHhCCCCeEEEEcCcchHHHHHHHHHhcCCCCCCCEEEeccC
Q 007781 402 QGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAG 452 (590)
Q Consensus 402 ~~p~~a~~l~~~~~~~~Vvv~GGDGTV~~Vln~L~~~~~~~~~plgILPlG 452 (590)
..|..+++...+++-++||-.||..|+-+-+..|.+...... .|-|+|.|
T Consensus 128 ~d~~~ale~L~~lG~~rILTSG~~~~a~~g~~~L~~Lv~~a~-~i~Im~Gg 177 (256)
T 1twd_A 128 ANPLYTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAHRD-APIIMAGA 177 (256)
T ss_dssp SCHHHHHHHHHHHTCCEEEECTTSSSTTTTHHHHHHHHTSSS-CCEEEEES
T ss_pred CCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhhC-CcEEEecC
Confidence 456777777777777899999999998776666654321234 78889876
No 128
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=20.22 E-value=33 Score=33.40 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=34.8
Q ss_pred CCchHHHHHHHhCCCCeEEEEcCcch--HHHHHHHHHhcCCCCCCCEEEeccC
Q 007781 402 QGPEVGLFLFRKVPHFRVLVCGGDGT--VGWVLNAIDKQNFVSPPPVAILPAG 452 (590)
Q Consensus 402 ~~p~~a~~l~~~~~~~~Vvv~GGDGT--V~~Vln~L~~~~~~~~~plgILPlG 452 (590)
..|..+++...+.+-++||-.||..| +-+-+..|.+........|-|+|.|
T Consensus 133 ~d~~~ale~L~~lGv~rILTSG~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~Gg 185 (224)
T 2bdq_A 133 SDQKKSIDQLVALGFTRILLHGSSNGEPIIENIKHIKALVEYANNRIEIMVGG 185 (224)
T ss_dssp TTHHHHHHHHHHTTCCEEEECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEECS
T ss_pred cCHHHHHHHHHHcCCCEEECCCCCCCCcHHHHHHHHHHHHHhhCCCeEEEeCC
Confidence 56677788778888889999999999 6655444433210123468888875
Done!